Query psy10674
Match_columns 138
No_of_seqs 206 out of 1342
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 15:47:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xqn_T Testin, TESS; metal-bin 100.0 3.6E-31 1.2E-35 172.3 8.8 113 13-133 3-118 (126)
2 2xjy_A Rhombotin-2; oncoprotei 100.0 4E-30 1.4E-34 168.3 7.6 113 14-134 3-121 (131)
3 2rgt_A Fusion of LIM/homeobox 100.0 5.9E-29 2E-33 169.3 8.2 115 11-133 4-120 (169)
4 2jtn_A LIM domain-binding prot 100.0 9.2E-29 3.1E-33 170.1 9.0 116 10-133 57-174 (182)
5 1b8t_A Protein (CRP1); LIM dom 100.0 6.8E-29 2.3E-33 172.1 8.1 114 12-133 6-167 (192)
6 1rut_X Flinc4, fusion protein 99.9 1.3E-28 4.5E-33 170.2 6.5 115 12-134 4-124 (188)
7 2cup_A Skeletal muscle LIM-pro 99.9 6.1E-27 2.1E-31 146.7 7.9 95 13-114 5-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.9 4.8E-23 1.6E-27 133.1 4.1 100 13-134 5-108 (122)
9 2egq_A FHL1 protein; LIM domai 99.8 3.3E-20 1.1E-24 110.5 1.9 67 65-133 1-71 (77)
10 1j2o_A FLIN2, fusion of rhombo 99.8 1.6E-19 5.4E-24 115.3 5.2 95 13-134 3-100 (114)
11 2ehe_A Four and A half LIM dom 99.8 3.1E-20 1.1E-24 111.9 1.1 68 65-134 1-69 (82)
12 1b8t_A Protein (CRP1); LIM dom 99.8 1E-18 3.4E-23 120.9 7.2 89 1-90 22-185 (192)
13 2cuq_A Four and A half LIM dom 99.8 1.3E-19 4.3E-24 108.7 2.0 66 65-133 1-66 (80)
14 1x3h_A Leupaxin; paxillin fami 99.8 1.5E-19 5.2E-24 108.4 1.8 66 65-133 1-66 (80)
15 2dlo_A Thyroid receptor-intera 99.7 4.5E-19 1.5E-23 106.6 2.4 66 65-133 2-67 (81)
16 1x63_A Skeletal muscle LIM-pro 99.7 5.6E-19 1.9E-23 106.3 1.8 67 65-133 1-68 (82)
17 1x6a_A LIMK-2, LIM domain kina 99.7 9.6E-19 3.3E-23 105.1 1.6 66 65-133 1-68 (81)
18 1iml_A CRIP, cysteine rich int 99.7 8E-18 2.7E-22 99.9 5.1 71 14-91 1-72 (76)
19 1a7i_A QCRP2 (LIM1); LIM domai 99.7 2.3E-17 7.8E-22 99.0 4.1 73 11-90 5-77 (81)
20 1v6g_A Actin binding LIM prote 99.7 1.4E-17 4.7E-22 100.0 1.7 66 66-133 2-67 (81)
21 1rut_X Flinc4, fusion protein 99.7 3.5E-17 1.2E-21 112.8 3.2 108 2-110 21-170 (188)
22 2xqn_T Testin, TESS; metal-bin 99.7 6.1E-17 2.1E-21 104.8 3.9 77 2-78 19-125 (126)
23 1x4k_A Skeletal muscle LIM-pro 99.6 2.8E-16 9.5E-21 92.1 6.1 66 14-85 6-71 (72)
24 1wyh_A SLIM 2, skeletal muscle 99.6 2.7E-16 9.2E-21 92.2 6.0 67 13-85 5-71 (72)
25 1x68_A FHL5 protein; four-and- 99.6 1.3E-16 4.5E-21 94.6 3.7 67 14-87 6-75 (76)
26 2cu8_A Cysteine-rich protein 2 99.6 3.9E-16 1.3E-20 92.5 5.6 69 10-85 6-75 (76)
27 2xjy_A Rhombotin-2; oncoprotei 99.6 1.9E-16 6.4E-21 103.1 4.3 77 2-78 18-127 (131)
28 1g47_A Pinch protein; LIM doma 99.6 4.1E-16 1.4E-20 92.6 5.2 67 12-84 10-76 (77)
29 2dj7_A Actin-binding LIM prote 99.6 4.1E-16 1.4E-20 93.4 5.1 66 12-85 14-79 (80)
30 2cur_A Skeletal muscle LIM-pro 99.6 4.5E-16 1.5E-20 90.6 5.1 65 13-85 5-69 (69)
31 2d8z_A Four and A half LIM dom 99.6 7E-16 2.4E-20 90.0 4.7 65 13-85 5-69 (70)
32 1x61_A Thyroid receptor intera 99.6 1.1E-15 3.9E-20 89.5 5.5 67 13-86 5-71 (72)
33 2dar_A PDZ and LIM domain prot 99.6 1.1E-15 3.7E-20 93.4 5.5 66 12-85 24-89 (90)
34 1x4l_A Skeletal muscle LIM-pro 99.6 1.2E-15 4.3E-20 89.4 5.2 65 13-83 5-71 (72)
35 1x68_A FHL5 protein; four-and- 99.6 7.8E-16 2.7E-20 91.2 3.8 56 77-134 3-61 (76)
36 2rgt_A Fusion of LIM/homeobox 99.6 1.5E-15 5.1E-20 102.9 5.7 105 2-109 22-156 (169)
37 1nyp_A Pinch protein; LIM doma 99.6 4.8E-16 1.7E-20 89.7 2.7 52 80-133 5-56 (66)
38 1wig_A KIAA1808 protein; LIM d 99.6 5.3E-16 1.8E-20 91.3 2.8 53 80-134 5-58 (73)
39 2cu8_A Cysteine-rich protein 2 99.6 8.2E-16 2.8E-20 91.1 3.6 53 80-133 9-61 (76)
40 2ehe_A Four and A half LIM dom 99.6 6.2E-16 2.1E-20 92.9 3.1 66 14-85 16-81 (82)
41 1x4l_A Skeletal muscle LIM-pro 99.6 1.4E-15 4.7E-20 89.2 4.3 53 80-133 5-60 (72)
42 1x63_A Skeletal muscle LIM-pro 99.6 3.7E-15 1.3E-19 89.4 6.3 66 13-84 15-80 (82)
43 2iyb_E Testin, TESS, TES; LIM 99.6 7E-16 2.4E-20 88.8 2.8 53 80-133 2-57 (65)
44 1x3h_A Leupaxin; paxillin fami 99.6 2.2E-15 7.5E-20 90.0 5.1 64 14-85 16-79 (80)
45 1nyp_A Pinch protein; LIM doma 99.6 1.6E-15 5.3E-20 87.5 4.3 60 13-79 5-64 (66)
46 1iml_A CRIP, cysteine rich int 99.6 1.5E-15 5.3E-20 89.9 3.3 52 81-133 1-52 (76)
47 2dj7_A Actin-binding LIM prote 99.6 1.8E-15 6.2E-20 90.6 3.6 53 80-134 15-67 (80)
48 2dlo_A Thyroid receptor-intera 99.6 6.1E-15 2.1E-19 88.3 5.9 67 11-85 13-80 (81)
49 1x61_A Thyroid receptor intera 99.6 2.9E-15 9.9E-20 87.8 4.4 53 80-133 5-58 (72)
50 2d8y_A Eplin protein; LIM doma 99.6 4.1E-15 1.4E-19 91.1 5.0 68 12-86 14-81 (91)
51 3f6q_B LIM and senescent cell 99.6 6.6E-15 2.3E-19 86.0 5.5 63 11-78 9-71 (72)
52 2cuq_A Four and A half LIM dom 99.5 4.5E-15 1.5E-19 88.7 4.8 65 13-85 15-79 (80)
53 1x4k_A Skeletal muscle LIM-pro 99.5 2.4E-15 8.3E-20 88.1 3.6 55 77-133 3-58 (72)
54 2cur_A Skeletal muscle LIM-pro 99.5 4.2E-15 1.5E-19 86.4 4.3 52 80-133 5-56 (69)
55 1wyh_A SLIM 2, skeletal muscle 99.5 2.5E-15 8.7E-20 88.0 3.3 53 80-133 5-58 (72)
56 1a7i_A QCRP2 (LIM1); LIM domai 99.5 2.4E-15 8.1E-20 90.1 3.1 53 80-133 7-59 (81)
57 2d8x_A Protein pinch; LIM doma 99.5 2.9E-15 1E-19 87.3 3.4 52 80-133 5-56 (70)
58 1x64_A Alpha-actinin-2 associa 99.5 8.9E-15 3E-19 89.2 5.6 66 11-84 23-88 (89)
59 2d8z_A Four and A half LIM dom 99.5 5.4E-15 1.8E-19 86.1 4.3 52 80-133 5-56 (70)
60 2co8_A NEDD9 interacting prote 99.5 4.2E-15 1.4E-19 89.3 3.8 55 80-134 15-70 (82)
61 2d8x_A Protein pinch; LIM doma 99.5 1.4E-14 4.8E-19 84.4 5.6 60 13-79 5-64 (70)
62 1x62_A C-terminal LIM domain p 99.5 3.7E-15 1.3E-19 88.9 3.2 66 11-84 13-78 (79)
63 2jtn_A LIM domain-binding prot 99.5 7.5E-15 2.6E-19 100.6 5.1 75 2-77 76-180 (182)
64 2d8y_A Eplin protein; LIM doma 99.5 1.2E-14 4.1E-19 88.9 4.4 53 80-133 15-67 (91)
65 2dar_A PDZ and LIM domain prot 99.5 1.2E-14 4.3E-19 88.7 4.5 55 76-133 22-76 (90)
66 2cor_A Pinch protein; LIM doma 99.5 3.1E-14 1.1E-18 84.9 6.1 65 11-84 13-77 (79)
67 2l4z_A DNA endonuclease RBBP8, 99.5 1.3E-14 4.6E-19 93.5 4.2 53 80-133 61-115 (123)
68 2l3k_A Rhombotin-2, linker, LI 99.5 2.9E-14 9.9E-19 91.9 5.7 76 15-96 10-86 (123)
69 1j2o_A FLIN2, fusion of rhombo 99.5 1.7E-14 5.7E-19 91.8 4.5 53 80-133 3-57 (114)
70 1x62_A C-terminal LIM domain p 99.5 5.1E-15 1.7E-19 88.3 2.0 52 80-133 15-66 (79)
71 3f6q_B LIM and senescent cell 99.5 6.1E-15 2.1E-19 86.2 2.0 53 80-133 11-64 (72)
72 1g47_A Pinch protein; LIM doma 99.5 1.2E-14 4.2E-19 86.1 2.6 53 80-133 11-64 (77)
73 2egq_A FHL1 protein; LIM domai 99.5 3.9E-14 1.3E-18 83.9 4.8 58 13-76 15-76 (77)
74 2cor_A Pinch protein; LIM doma 99.5 1.6E-14 5.6E-19 86.1 2.8 51 80-133 15-65 (79)
75 1x64_A Alpha-actinin-2 associa 99.5 2.4E-14 8.3E-19 87.2 3.3 52 80-133 25-76 (89)
76 1wig_A KIAA1808 protein; LIM d 99.5 3.4E-14 1.2E-18 83.5 3.6 59 13-78 5-64 (73)
77 2l4z_A DNA endonuclease RBBP8, 99.5 3.8E-14 1.3E-18 91.3 4.1 61 13-79 61-123 (123)
78 2iyb_E Testin, TESS, TES; LIM 99.5 6.8E-14 2.3E-18 80.4 4.7 58 14-77 3-64 (65)
79 2cup_A Skeletal muscle LIM-pro 99.4 4.4E-14 1.5E-18 87.9 3.7 53 80-133 5-58 (101)
80 2co8_A NEDD9 interacting prote 99.4 2.6E-14 8.8E-19 85.9 2.1 62 12-79 14-77 (82)
81 2l3k_A Rhombotin-2, linker, LI 99.4 2.6E-14 9E-19 92.1 2.2 58 75-134 2-63 (123)
82 1m3v_A FLIN4, fusion of the LI 99.4 2.5E-14 8.5E-19 92.1 1.3 53 80-133 5-59 (122)
83 1x6a_A LIMK-2, LIM domain kina 99.4 1.6E-13 5.3E-18 82.1 4.2 64 13-84 15-80 (81)
84 1v6g_A Actin binding LIM prote 99.2 5.5E-12 1.9E-16 75.3 3.7 59 14-79 16-75 (81)
85 1zfo_A LAsp-1; LIM domain, zin 98.2 3.5E-07 1.2E-11 44.4 1.0 28 81-108 4-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 97.0 0.00011 3.7E-09 35.3 0.2 28 14-47 4-31 (31)
87 1t1h_A Gspef-atpub14, armadill 88.6 1.1 3.8E-05 25.1 4.9 51 45-96 7-59 (78)
88 3vk6_A E3 ubiquitin-protein li 88.2 0.56 1.9E-05 28.4 3.4 55 48-103 3-59 (101)
89 2ysl_A Tripartite motif-contai 87.8 0.72 2.5E-05 25.5 3.7 47 46-93 20-70 (73)
90 2ecy_A TNF receptor-associated 87.2 0.5 1.7E-05 25.7 2.7 48 46-94 15-64 (66)
91 2ysm_A Myeloid/lymphoid or mix 85.8 0.57 1.9E-05 28.7 2.6 76 14-109 8-85 (111)
92 1weo_A Cellulose synthase, cat 82.9 1.4 4.7E-05 26.1 3.2 26 66-91 42-69 (93)
93 1g25_A CDK-activating kinase a 82.8 1.9 6.5E-05 23.2 3.8 50 47-96 4-59 (65)
94 2djb_A Polycomb group ring fin 82.1 1.6 5.4E-05 24.1 3.3 50 46-95 15-65 (72)
95 1jjd_A Metallothionein, SMTA; 81.5 0.81 2.8E-05 24.6 1.8 23 110-133 10-32 (55)
96 2kre_A Ubiquitin conjugation f 80.3 4 0.00014 24.3 4.9 53 43-96 26-79 (100)
97 4gne_A Histone-lysine N-methyl 78.7 3.5 0.00012 25.2 4.2 80 15-134 17-101 (107)
98 4ap4_A E3 ubiquitin ligase RNF 78.6 2.6 8.8E-05 25.9 3.8 72 15-95 50-128 (133)
99 2gvi_A Conserved hypothetical 76.6 1.4 5E-05 30.0 2.3 30 47-76 173-202 (204)
100 3lrq_A E3 ubiquitin-protein li 76.3 1.5 5E-05 26.1 2.0 49 47-96 23-74 (100)
101 1wgm_A Ubiquitin conjugation f 74.9 5.5 0.00019 23.6 4.3 52 44-96 20-73 (98)
102 2jrp_A Putative cytoplasmic pr 74.5 1.2 4.1E-05 25.9 1.2 11 14-24 3-13 (81)
103 2ecm_A Ring finger and CHY zin 74.0 2.1 7.2E-05 22.0 2.1 25 66-90 28-53 (55)
104 2ct0_A Non-SMC element 1 homol 73.4 1.2 3.9E-05 25.4 1.0 28 81-108 16-43 (74)
105 2xeu_A Ring finger protein 4; 72.9 2.8 9.7E-05 22.1 2.5 50 47-96 4-60 (64)
106 2kr4_A Ubiquitin conjugation f 72.9 4.2 0.00014 23.4 3.4 52 44-96 12-64 (85)
107 2y43_A E3 ubiquitin-protein li 72.8 3.6 0.00012 24.1 3.2 48 46-94 22-71 (99)
108 2dmj_A Poly (ADP-ribose) polym 72.6 1.1 3.7E-05 27.4 0.8 30 80-109 25-65 (106)
109 2jne_A Hypothetical protein YF 71.7 0.84 2.9E-05 27.5 0.1 60 47-118 33-92 (101)
110 2ecw_A Tripartite motif-contai 71.0 4.4 0.00015 22.6 3.2 50 46-96 19-75 (85)
111 2cs3_A Protein C14ORF4, MY039 70.3 1.5 5E-05 25.5 0.9 32 81-112 16-47 (93)
112 3hcs_A TNF receptor-associated 70.1 5.1 0.00017 26.0 3.7 48 46-94 18-67 (170)
113 2ect_A Ring finger protein 126 69.4 5.4 0.00018 22.1 3.3 46 47-92 16-64 (78)
114 1v9x_A Poly (ADP-ribose) polym 69.2 1.6 5.3E-05 27.1 0.9 30 80-109 20-60 (114)
115 2d8t_A Dactylidin, ring finger 68.5 11 0.00038 20.4 4.5 47 46-93 15-62 (71)
116 1jm7_B BARD1, BRCA1-associated 68.2 3 0.0001 25.4 2.1 45 46-92 22-67 (117)
117 3ztg_A E3 ubiquitin-protein li 67.9 4.6 0.00016 23.2 2.8 45 45-90 12-60 (92)
118 1e4u_A Transcriptional repress 67.1 4.5 0.00015 22.9 2.6 48 47-94 12-64 (78)
119 3hct_A TNF receptor-associated 67.1 2.9 0.0001 25.5 1.9 48 47-95 19-68 (118)
120 2csy_A Zinc finger protein 183 67.0 6.1 0.00021 22.1 3.2 44 47-91 16-60 (81)
121 1chc_A Equine herpes virus-1 r 66.9 3 0.0001 22.5 1.8 45 47-91 6-51 (68)
122 1rmd_A RAG1; V(D)J recombinati 66.9 4.3 0.00015 24.5 2.7 48 47-95 24-73 (116)
123 2ecn_A Ring finger protein 141 66.3 6.7 0.00023 21.1 3.2 46 46-93 15-61 (70)
124 2ct2_A Tripartite motif protei 65.5 4.4 0.00015 22.9 2.4 47 47-93 16-69 (88)
125 2c2l_A CHIP, carboxy terminus 65.3 5.8 0.0002 27.6 3.4 53 43-96 205-259 (281)
126 3fl2_A E3 ubiquitin-protein li 65.1 9.2 0.00031 23.3 4.0 46 46-92 52-99 (124)
127 2yur_A Retinoblastoma-binding 64.9 3.7 0.00013 22.7 1.9 46 46-92 15-64 (74)
128 4ayc_A E3 ubiquitin-protein li 63.8 10 0.00035 23.7 4.1 45 47-92 54-99 (138)
129 1jm7_A BRCA1, breast cancer ty 63.4 3.6 0.00012 24.5 1.8 48 47-95 22-73 (112)
130 2e5r_A Dystrobrevin alpha; ZZ 63.3 14 0.00049 20.0 4.1 36 40-77 7-45 (63)
131 2egp_A Tripartite motif-contai 63.3 3.7 0.00013 22.8 1.7 46 47-93 13-66 (79)
132 3odc_A Poly [ADP-ribose] polym 63.1 1.6 5.6E-05 26.8 0.2 30 80-109 19-61 (111)
133 2ckl_B Ubiquitin ligase protei 62.7 4.9 0.00017 26.0 2.4 46 46-92 54-102 (165)
134 3od8_A Poly [ADP-ribose] polym 62.5 1.6 5.5E-05 27.1 0.0 30 80-109 38-78 (116)
135 2ckl_A Polycomb group ring fin 62.0 9.2 0.00032 22.7 3.5 46 46-92 15-62 (108)
136 1uw0_A DNA ligase III; DNA rep 60.9 2.2 7.5E-05 26.5 0.5 15 80-94 15-29 (117)
137 2yu4_A E3 SUMO-protein ligase 59.8 6.2 0.00021 23.0 2.3 51 45-96 6-67 (94)
138 2cs2_A Poly [ADP-ribose] polym 58.7 2.8 9.7E-05 26.7 0.7 30 80-109 27-69 (134)
139 2e6s_A E3 ubiquitin-protein li 58.1 4.6 0.00016 23.0 1.5 28 82-109 28-57 (77)
140 2ecv_A Tripartite motif-contai 58.1 3.8 0.00013 22.9 1.2 47 47-94 20-73 (85)
141 1x4j_A Ring finger protein 38; 58.0 5 0.00017 22.1 1.6 44 47-90 24-70 (75)
142 3nw0_A Non-structural maintena 57.5 3.5 0.00012 28.8 1.1 40 80-120 180-230 (238)
143 3ng2_A RNF4, snurf, ring finge 57.0 4.9 0.00017 21.7 1.4 48 47-94 11-65 (71)
144 3l11_A E3 ubiquitin-protein li 56.7 8.8 0.0003 23.0 2.7 44 47-91 16-61 (115)
145 1z6u_A NP95-like ring finger p 56.1 12 0.0004 24.0 3.4 47 46-93 78-126 (150)
146 2f42_A STIP1 homology and U-bo 56.0 14 0.00047 24.6 3.8 51 44-96 104-157 (179)
147 2ysj_A Tripartite motif-contai 56.0 14 0.00049 19.3 3.3 32 46-78 20-51 (63)
148 2ecl_A Ring-box protein 2; RNF 52.9 5.7 0.00019 22.5 1.3 15 42-56 11-25 (81)
149 2ecg_A Baculoviral IAP repeat- 51.9 12 0.00041 20.6 2.6 42 47-92 26-68 (75)
150 1iym_A EL5; ring-H2 finger, ub 51.8 6.9 0.00024 19.9 1.5 25 66-90 28-53 (55)
151 2bay_A PRE-mRNA splicing facto 51.2 11 0.00038 20.1 2.3 50 47-97 4-55 (61)
152 2vpb_A Hpygo1, pygopus homolog 51.1 6 0.0002 21.7 1.1 27 81-107 9-39 (65)
153 3knv_A TNF receptor-associated 50.3 6.9 0.00024 24.8 1.5 46 45-91 30-77 (141)
154 4ic3_A E3 ubiquitin-protein li 49.1 14 0.00048 20.3 2.6 42 47-92 25-67 (74)
155 2ea6_A Ring finger protein 4; 48.8 9.9 0.00034 20.2 1.9 46 46-91 15-67 (69)
156 3htk_C E3 SUMO-protein ligase 47.7 21 0.00073 25.4 3.8 50 46-96 181-236 (267)
157 2kiz_A E3 ubiquitin-protein li 46.8 8.2 0.00028 20.7 1.3 46 47-92 15-63 (69)
158 2eqg_A Tumor necrosis factor, 43.9 10 0.00035 19.1 1.2 18 61-78 22-39 (49)
159 2ep4_A Ring finger protein 24; 41.5 41 0.0014 18.0 3.8 46 47-92 16-64 (74)
160 4av1_A Poly [ADP-ribose] polym 41.4 5.6 0.00019 27.6 0.0 35 14-48 40-79 (223)
161 1znf_A 31ST zinc finger from X 40.8 11 0.00037 15.1 1.0 12 108-119 2-13 (27)
162 1ard_A Yeast transcription fac 38.4 12 0.00041 15.2 1.0 11 108-118 3-13 (29)
163 2ecj_A Tripartite motif-contai 36.9 35 0.0012 17.1 2.9 30 47-77 16-45 (58)
164 2das_A Zinc finger MYM-type pr 36.8 25 0.00084 19.1 2.1 11 82-92 22-32 (62)
165 2m0e_A Zinc finger and BTB dom 36.0 17 0.00057 14.6 1.3 11 108-118 3-13 (29)
166 2yt5_A Metal-response element- 35.9 26 0.00091 18.7 2.3 28 82-109 8-39 (66)
167 1paa_A Yeast transcription fac 35.5 14 0.00049 15.2 1.0 12 108-119 3-14 (30)
168 3asl_A E3 ubiquitin-protein li 35.5 21 0.00071 19.7 1.8 8 101-108 41-48 (70)
169 2l0b_A E3 ubiquitin-protein li 35.3 12 0.00043 21.4 0.9 45 47-91 41-88 (91)
170 2kvh_A Zinc finger and BTB dom 34.8 10 0.00035 15.4 0.4 11 108-118 4-14 (27)
171 1vq8_Z 50S ribosomal protein L 34.4 12 0.00042 21.6 0.7 35 81-124 28-62 (83)
172 1f62_A Transcription factor WS 34.4 12 0.00041 19.0 0.7 26 83-108 3-30 (51)
173 2yho_A E3 ubiquitin-protein li 34.3 26 0.0009 19.6 2.2 42 47-92 19-61 (79)
174 3j21_V 50S ribosomal protein L 34.1 23 0.00078 19.6 1.8 25 80-104 4-31 (66)
175 2d8v_A Zinc finger FYVE domain 33.9 14 0.00046 20.5 0.8 16 63-78 24-39 (67)
176 2xb1_A Pygopus homolog 2, B-ce 33.6 24 0.00083 21.1 2.0 9 82-90 5-13 (105)
177 2lvu_A Zinc finger and BTB dom 39.6 8.9 0.00031 15.4 0.0 12 108-119 3-14 (26)
178 2kvf_A Zinc finger and BTB dom 31.7 12 0.00043 15.1 0.4 11 108-118 4-14 (28)
179 1klr_A Zinc finger Y-chromosom 31.6 18 0.0006 14.7 0.9 12 108-119 3-14 (30)
180 3jyw_9 60S ribosomal protein L 31.3 20 0.00067 20.2 1.2 36 81-125 27-62 (72)
181 2lo3_A SAGA-associated factor 31.2 12 0.0004 18.8 0.2 13 14-26 18-30 (44)
182 2ea5_A Cell growth regulator w 31.2 23 0.0008 19.2 1.5 42 47-92 16-58 (68)
183 2csz_A Synaptotagmin-like prot 30.7 77 0.0026 17.9 4.2 11 47-57 26-36 (76)
184 2vje_B MDM4 protein; proto-onc 30.3 57 0.0019 17.1 3.0 45 48-92 9-56 (63)
185 2m0f_A Zinc finger and BTB dom 30.2 13 0.00046 15.0 0.3 11 108-118 3-13 (29)
186 2dip_A Zinc finger SWIM domain 30.1 60 0.0021 19.2 3.3 35 41-76 27-64 (98)
187 1vq8_U 50S ribosomal protein L 30.1 25 0.00085 19.4 1.5 24 81-104 4-30 (66)
188 2hqh_E Restin; beta/BETA struc 30.0 14 0.00049 16.4 0.4 8 128-135 2-9 (26)
189 1rik_A E6APC1 peptide; E6-bind 29.9 17 0.00057 14.7 0.7 12 108-119 3-14 (29)
190 2lbm_A Transcriptional regulat 29.7 58 0.002 20.7 3.4 7 82-88 65-71 (142)
191 2kwj_A Zinc finger protein DPF 29.5 36 0.0012 20.6 2.4 38 65-109 50-89 (114)
192 1p7a_A BF3, BKLF, kruppel-like 29.3 20 0.00068 15.7 0.9 11 108-118 12-22 (37)
193 1wjv_A Cell growth regulating 29.0 2 7E-05 24.7 -3.2 41 13-59 10-50 (79)
194 3d00_A Tungsten formylmethanof 28.6 13 0.00044 25.0 0.1 25 47-77 164-188 (191)
195 3shb_A E3 ubiquitin-protein li 28.5 33 0.0011 19.3 1.9 7 101-107 49-55 (77)
196 1lv3_A Hypothetical protein YA 28.3 17 0.0006 20.2 0.6 11 81-91 10-20 (68)
197 2m0d_A Zinc finger and BTB dom 28.3 15 0.00052 14.9 0.3 11 108-118 4-14 (30)
198 1v87_A Deltex protein 2; ring- 28.3 19 0.00067 21.3 0.9 11 47-57 26-36 (114)
199 1bor_A Transcription factor PM 28.1 39 0.0013 17.2 2.0 41 47-90 7-47 (56)
200 2elr_A Zinc finger protein 406 28.1 22 0.00076 15.4 1.0 12 108-119 10-21 (36)
201 2kvg_A Zinc finger and BTB dom 27.8 12 0.00041 15.2 -0.1 11 108-118 4-14 (27)
202 2lvr_A Zinc finger and BTB dom 33.3 13 0.00045 15.2 0.0 12 108-119 4-15 (30)
203 1wev_A Riken cDNA 1110020M19; 27.2 49 0.0017 19.0 2.5 8 82-89 18-25 (88)
204 3dpl_R Ring-box protein 1; ubi 27.0 28 0.00095 20.8 1.5 14 44-57 35-48 (106)
205 1rim_A E6APC2 peptide; E6-bind 27.0 23 0.0008 15.3 0.9 12 108-119 3-14 (33)
206 2lvt_A Zinc finger and BTB dom 32.7 14 0.00047 15.2 0.0 12 108-119 3-14 (29)
207 2elx_A Zinc finger protein 406 25.6 18 0.00063 15.5 0.4 11 108-118 8-18 (35)
208 1srk_A Zinc finger protein ZFP 25.1 19 0.00065 15.6 0.4 11 108-118 8-18 (35)
209 2d8s_A Cellular modulator of i 25.1 62 0.0021 18.1 2.7 38 81-118 16-69 (80)
210 3gox_A Restriction endonucleas 24.7 33 0.0011 23.2 1.6 44 48-91 77-148 (200)
211 2yql_A PHD finger protein 21A; 24.4 48 0.0016 17.1 2.0 10 100-109 28-37 (56)
212 3e2u_E CAP-Gly domain-containi 24.3 22 0.00076 17.7 0.5 8 128-135 19-26 (42)
213 1fv5_A First zinc finger of U- 23.7 19 0.00066 16.8 0.3 12 108-119 9-20 (36)
214 2kfq_A FP1; protein, de novo p 23.6 21 0.00073 15.2 0.4 11 108-118 3-13 (32)
215 2hf1_A Tetraacyldisaccharide-1 23.4 31 0.0011 19.1 1.1 10 47-56 9-18 (68)
216 2yte_A Zinc finger protein 473 23.2 30 0.001 15.6 1.0 12 108-119 11-22 (42)
217 2jny_A Uncharacterized BCR; st 23.1 31 0.0011 19.0 1.1 24 47-73 11-34 (67)
218 2vje_A E3 ubiquitin-protein li 23.1 62 0.0021 17.0 2.3 44 48-91 10-56 (64)
219 2k16_A Transcription initiatio 23.0 32 0.0011 18.9 1.2 9 82-90 20-28 (75)
220 2jr6_A UPF0434 protein NMA0874 23.0 33 0.0011 18.9 1.1 10 47-56 9-18 (68)
221 2elq_A Zinc finger protein 406 22.6 23 0.00078 15.5 0.4 11 108-118 10-20 (36)
222 2puy_A PHD finger protein 21A; 22.2 44 0.0015 17.5 1.5 8 101-108 25-32 (60)
223 2js4_A UPF0434 protein BB2007; 22.0 32 0.0011 19.1 0.9 10 47-56 9-18 (70)
224 2vut_I AREA, nitrogen regulato 21.9 86 0.0029 15.5 2.5 13 64-76 19-31 (43)
225 3j21_i 50S ribosomal protein L 21.9 37 0.0013 19.6 1.2 36 81-125 36-71 (83)
226 2elt_A Zinc finger protein 406 21.8 24 0.00082 15.3 0.4 11 108-118 10-20 (36)
227 2elp_A Zinc finger protein 406 21.7 24 0.00081 15.5 0.3 13 107-119 9-21 (37)
228 2els_A Zinc finger protein 406 21.6 24 0.00082 15.4 0.3 11 108-118 10-20 (36)
229 2elv_A Zinc finger protein 406 21.6 24 0.00083 15.3 0.4 11 108-118 10-20 (36)
230 2e6r_A Jumonji/ARID domain-con 21.5 50 0.0017 19.2 1.8 25 44-74 14-38 (92)
231 2elo_A Zinc finger protein 406 21.5 23 0.00078 15.5 0.3 11 108-118 10-20 (37)
232 2en7_A Zinc finger protein 268 21.4 33 0.0011 15.7 0.9 12 108-119 13-24 (44)
233 2enf_A Zinc finger protein 347 21.2 35 0.0012 15.9 1.0 13 107-119 12-24 (46)
234 2eos_A B-cell lymphoma 6 prote 21.0 35 0.0012 15.4 0.9 12 108-119 12-23 (42)
235 2ytb_A Zinc finger protein 32; 21.0 35 0.0012 15.4 0.9 12 108-119 12-23 (42)
236 2ely_A Zinc finger protein 224 21.0 43 0.0015 15.6 1.3 14 107-120 12-25 (46)
237 1loi_A Cyclic 3',5'-AMP specif 20.9 17 0.00057 15.6 -0.3 9 108-116 6-14 (26)
238 2elm_A Zinc finger protein 406 20.9 24 0.00081 15.7 0.2 11 108-118 10-20 (37)
239 1pft_A TFIIB, PFTFIIBN; N-term 20.9 27 0.00091 17.6 0.4 9 82-90 26-34 (50)
240 2emg_A Zinc finger protein 484 20.8 36 0.0012 15.8 1.0 13 107-119 12-24 (46)
241 2eon_A ZFP-95, zinc finger pro 20.4 37 0.0013 15.8 1.0 12 108-119 13-24 (46)
242 2y1n_A E3 ubiquitin-protein li 20.4 77 0.0026 23.8 3.0 46 47-93 333-380 (389)
243 2eq2_A Zinc finger protein 347 20.4 37 0.0013 15.8 0.9 13 107-119 12-24 (46)
244 2lv9_A Histone-lysine N-methyl 20.2 64 0.0022 18.9 2.1 27 41-74 23-49 (98)
245 1twf_J DNA-directed RNA polyme 20.1 38 0.0013 18.9 1.0 11 109-119 6-16 (70)
No 1
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.97 E-value=3.6e-31 Score=172.26 Aligned_cols=113 Identities=25% Similarity=0.475 Sum_probs=101.8
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCccccc
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFV 92 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~ 92 (138)
..+|..|+++|.+++.+.. +++.||++||+|..|+++|.+..|+.++|++||+.||.++++ ++|++|+++|.+
T Consensus 3 ~~~C~~C~~~I~~~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~-~~C~~C~~~I~~ 75 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQA------ENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA-VVCQGCHNAIDP 75 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEE------TTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC-CBCTTTCSBCCT
T ss_pred CCCCccCCCEeCCceEEee------CCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC-ccCcccCCcCCc
Confidence 3689999999997666544 466999999999999999988889999999999999999995 899999999986
Q ss_pred C-cEEEeCCCccc--cCCccccccccccCCCCeeecCCCCCccC
Q psy10674 93 N-EYTLAENKTFH--VKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 93 ~-~~~~~~~~~~H--~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+ .++.++++.|| ++||+|..|+++|.++.|++.+ |+|||.
T Consensus 76 ~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~-~~~yC~ 118 (126)
T 2xqn_T 76 EVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVE-GMVFCS 118 (126)
T ss_dssp TSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEET-TEEESS
T ss_pred CceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeEC-CEEcch
Confidence 4 46779999999 9999999999999999999988 999996
No 2
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.96 E-value=4e-30 Score=168.32 Aligned_cols=113 Identities=24% Similarity=0.582 Sum_probs=98.6
Q ss_pred cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCcccc--CCceeeeCCeeecHHHHHhhcCCC--cccccCcc
Q psy10674 14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYATMLDIP--RCHACDEL 89 (138)
Q Consensus 14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~yC~~c~~~~~~~~--~C~~C~~~ 89 (138)
.+|..|+++|.+...+.. +++.||++||+|..|+++|. +..|+.++|++||+.||.++++ + +|.+|+++
T Consensus 3 ~~C~~C~~~I~~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~-~~~~C~~C~~~ 75 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKA------IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG-QDGLCASCDKR 75 (131)
T ss_dssp CBBTTTCCBCCSSEEEEE------TTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-CCEECTTTCCE
T ss_pred ccCcCCCCEeCCcEEEEE------CCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-CccChhhcCCc
Confidence 579999999995434433 46699999999999999995 4679999999999999999995 7 99999999
Q ss_pred cccCc-EEEeCCCccccCCccccccccccC-CCCeeecCCCCCccCC
Q psy10674 90 IFVNE-YTLAENKTFHVKHFCCYECDKELC-NQSYIPVTESRPGQDS 134 (138)
Q Consensus 90 I~~~~-~~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~~~~~y~~~ 134 (138)
|.+.+ ++.+.++.||++||+|..|+++|. +++|++.+ |+|||..
T Consensus 76 I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~-~~~~C~~ 121 (131)
T 2xjy_A 76 IRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLIN-SDIVCEQ 121 (131)
T ss_dssp ECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEET-TEEEEGG
T ss_pred cCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEEC-CEEEcHH
Confidence 98754 666999999999999999999995 78899998 9999964
No 3
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.96 E-value=5.9e-29 Score=169.26 Aligned_cols=115 Identities=23% Similarity=0.510 Sum_probs=97.0
Q ss_pred cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCccc
Q psy10674 11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELI 90 (138)
Q Consensus 11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I 90 (138)
+...+|..|+++|.+...+.. ++..||++||+|..|+++|.+.. +.++|++||+.||.++++ ++|.+|+++|
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~-~~C~~C~~~I 75 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKA------LDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFG-TKCAACQLGI 75 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEEC------SSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHS-CBCTTTCCBC
T ss_pred CCCCccccCCCccCCcEEEEE------CCcEEccccCccCCCCCcCCCCC-cccCCeeeeccccccccc-cccccccccc
Confidence 345789999999996544433 46699999999999999998765 589999999999999995 8999999999
Q ss_pred ccCcE-EEeCCCccccCCccccccccccC-CCCeeecCCCCCccC
Q psy10674 91 FVNEY-TLAENKTFHVKHFCCYECDKELC-NQSYIPVTESRPGQD 133 (138)
Q Consensus 91 ~~~~~-~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~~~~~y~~ 133 (138)
.+.++ +.+.++.||++||+|..|+++|. ++.|+...+|+|||.
T Consensus 76 ~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~ 120 (169)
T 2rgt_A 76 PPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCK 120 (169)
T ss_dssp CTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEH
T ss_pred CCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECH
Confidence 87664 45999999999999999999998 677876655999984
No 4
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.95 E-value=9.2e-29 Score=170.14 Aligned_cols=116 Identities=23% Similarity=0.504 Sum_probs=98.2
Q ss_pred CcCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcc
Q psy10674 10 HVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDEL 89 (138)
Q Consensus 10 h~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~ 89 (138)
.+...+|..|+++|.+...+.. +++.||++||+|..|+++|.+.. +.++|++||+.||.++++ ++|.+|+++
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~-~kC~~C~~~ 128 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKA------LDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFG-TKCAACQLG 128 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEE------TTEEECSSTTSCTTTCCCCSSCC-EEETTEEECHHHHHHTTS-CCCTTTCCC
T ss_pred CCCCCcCccCCCCccCceeEEe------cCCeEccccCccCCCCCccCCCc-eeECCEeeecCccccccc-cccccCCCc
Confidence 3445799999999995444433 46699999999999999998765 579999999999999995 899999999
Q ss_pred cccCc-EEEeCCCccccCCccccccccccC-CCCeeecCCCCCccC
Q psy10674 90 IFVNE-YTLAENKTFHVKHFCCYECDKELC-NQSYIPVTESRPGQD 133 (138)
Q Consensus 90 I~~~~-~~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~~~~~y~~ 133 (138)
|.+.+ ++.+.++.||++||+|..|+++|. +..|+...+|+|||.
T Consensus 129 I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~ 174 (182)
T 2jtn_A 129 IPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCK 174 (182)
T ss_dssp CCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECH
T ss_pred cCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECH
Confidence 98765 445999999999999999999998 677876655999995
No 5
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.95 E-value=6.8e-29 Score=172.08 Aligned_cols=114 Identities=22% Similarity=0.460 Sum_probs=101.6
Q ss_pred CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCc---------
Q psy10674 12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPR--------- 82 (138)
Q Consensus 12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~--------- 82 (138)
...+|..|+++|.+++.+.. +++.||++||+|..|+++|.+..|+.+++++||+.||.++++ ++
T Consensus 6 ~~~~C~~C~~~I~~~~~v~a------~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~-~~c~~c~~~~g 78 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEEVQC------EGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG-PKGKGKGMGAG 78 (192)
T ss_dssp CCEECTTTCCEECSSCCEEE------TTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS-CCCCCCCCCCC
T ss_pred CCCcCccCCCeecceeEEEe------CCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC-ccccccccccc
Confidence 35789999999987776644 466999999999999999988889999999999999999884 44
Q ss_pred ---------------------------------------ccccCcccccCcEEEeCCCccccCCccccccccccCCCCee
Q psy10674 83 ---------------------------------------CHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123 (138)
Q Consensus 83 ---------------------------------------C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~ 123 (138)
|++|+++|.+++++.++++.||++||+|..|+++|.+..|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~ 158 (192)
T 1b8t_A 79 TLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLA 158 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEE
T ss_pred cEecCCCcccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCccc
Confidence 88999999877777899999999999999999999988899
Q ss_pred ecCCCCCccC
Q psy10674 124 PVTESRPGQD 133 (138)
Q Consensus 124 ~~~~~~~y~~ 133 (138)
..+ |+|||.
T Consensus 159 ~~~-g~~yC~ 167 (192)
T 1b8t_A 159 DKD-GEIYCK 167 (192)
T ss_dssp EET-TEEEEH
T ss_pred ccC-CEEeCH
Confidence 888 999995
No 6
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.95 E-value=1.3e-28 Score=170.17 Aligned_cols=115 Identities=23% Similarity=0.515 Sum_probs=99.4
Q ss_pred CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccC--CceeeeCCeeecHHHHHhhcCCC--cccccC
Q psy10674 12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVD--LMYFHYKGNVYCLRDYATMLDIP--RCHACD 87 (138)
Q Consensus 12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~yC~~c~~~~~~~~--~C~~C~ 87 (138)
...+|..|+++|.+...+.. +++.||++||+|..|+++|.. ..|+.+++++||+.||.++++ + +|.+|+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~-~~~~C~~C~ 76 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYA------MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGACSACG 76 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEE------TTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS-CCEECTTTC
T ss_pred CCCcCccCCCEeCCceeEEe------cCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccc-cCCccccCC
Confidence 34689999999995433433 466999999999999999964 689999999999999999995 6 799999
Q ss_pred cccccCc-EEEeCCCccccCCccccccccccC-CCCeeecCCCCCccCC
Q psy10674 88 ELIFVNE-YTLAENKTFHVKHFCCYECDKELC-NQSYIPVTESRPGQDS 134 (138)
Q Consensus 88 ~~I~~~~-~~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~~~~~y~~~ 134 (138)
++|.+.+ ++.+.++.||++||+|..|+++|. +..|++.+ |+|||..
T Consensus 77 ~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~-g~~yC~~ 124 (188)
T 1rut_X 77 QSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYIN-GSLFCEH 124 (188)
T ss_dssp CEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEET-TEEEEGG
T ss_pred CccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEEC-CeEECHH
Confidence 9998755 566999999999999999999996 77899988 9999964
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.94 E-value=6.1e-27 Score=146.74 Aligned_cols=95 Identities=19% Similarity=0.439 Sum_probs=83.3
Q ss_pred CcccccccccccC-CCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccc
Q psy10674 13 HFCCYECDKKVQF-ENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIF 91 (138)
Q Consensus 13 ~~~C~~C~~~i~~-~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~ 91 (138)
..+|..|+++|.. ++.+.. ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|.+|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~-~~C~~C~~~I~ 77 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHY------KNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS-PKCKGCFKAIV 77 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEE------TTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC-CBCSSSCCBCC
T ss_pred CCcCcccCCcccCCceEEEE------CccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC-CccccCCCccc
Confidence 4689999999975 444443 466999999999999999988889999999999999999995 89999999998
Q ss_pred cC-cEEEeCCCccccCCccccccc
Q psy10674 92 VN-EYTLAENKTFHVKHFCCYECD 114 (138)
Q Consensus 92 ~~-~~~~~~~~~~H~~CF~C~~C~ 114 (138)
++ .++.++++.||++||+|..|+
T Consensus 78 ~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 78 AGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp SSSCEEESSSCEEETTTCCCTTCC
T ss_pred cCCeEEEeCCcchHHhCCCCCCCC
Confidence 54 467799999999999999985
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.87 E-value=4.8e-23 Score=133.14 Aligned_cols=100 Identities=16% Similarity=0.276 Sum_probs=84.2
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCcccc--CCceeeeCCeeecHHHHHhhcCCC--cccccCc
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYATMLDIP--RCHACDE 88 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~yC~~c~~~~~~~~--~C~~C~~ 88 (138)
..+|..|+++|.+...+.. ++..||++||+|..|+++|. +..|+.+++++||+.||.++++ + +|++|++
T Consensus 5 ~~~C~~C~~~I~~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~-~~~~C~~C~~ 77 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYA------MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGAGGSGGH 77 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEE------TTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC-CCCSSSCSSC
T ss_pred CCCCcccCCEeCCcEEEEE------CCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC-CCCccccCCC
Confidence 4689999999996654544 46699999999999999996 3579999999999999999995 7 9999999
Q ss_pred ccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccCC
Q psy10674 89 LIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDS 134 (138)
Q Consensus 89 ~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~ 134 (138)
+|.++.++ +.|+ .+|.+++|++.+ |+|||..
T Consensus 78 ~I~~~~~~-~~g~-------------~~l~g~~f~~~~-~~~yC~~ 108 (122)
T 1m3v_A 78 MGSGGDVM-VVGE-------------PTLMGGEFGDED-ERLITRL 108 (122)
T ss_dssp CSCCEESS-SSSS-------------SSCCSCTTCCTT-CCCCEEC
T ss_pred CcCchheE-EcCC-------------cCCCCCccEecC-CEeEccC
Confidence 99875544 6653 368899999999 9999975
No 9
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.3e-20 Score=110.52 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=61.1
Q ss_pred CCeeecHHHHHhhcCCCcccccCccccc----CcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 65 KGNVYCLRDYATMLDIPRCHACDELIFV----NEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~----~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
++++||++||.++++ ++|++|+++|.+ ..++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 1 g~~~yC~~cy~~~~~-~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~-~~~yC~ 71 (77)
T 2egq_A 1 GSSGSSGDCYKNFVA-KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQ-EQVYCP 71 (77)
T ss_dssp CCSSCCTTCCCSCCC-CCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEET-TEECCH
T ss_pred CCCeEchhHhchhhC-ccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeEC-CEEECh
Confidence 468999999999994 899999999984 4677799999999999999999999999999999 999995
No 10
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.78 E-value=1.6e-19 Score=115.29 Aligned_cols=95 Identities=17% Similarity=0.343 Sum_probs=75.7
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccC--CceeeeCCeeecHHHHHhhcCCCcccccCccc
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVD--LMYFHYKGNVYCLRDYATMLDIPRCHACDELI 90 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I 90 (138)
..+|..|+++|.+.+.+.. +++.||++||+|..|+++|.. ..|+.+++++||+.||.++++ ++|..|..
T Consensus 3 ~~~C~~C~~~I~~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~-~~c~~c~~-- 73 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKA------IDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG-SGGHMGSG-- 73 (114)
T ss_dssp CBCBSSSCSCBCSSEEEEC------SSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT-SCCSSCBS--
T ss_pred CCCCcCCCCeeCCcEEEEE------CchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC-cccCcCCC--
Confidence 4689999999995434433 467999999999999999964 579999999999999999995 89998862
Q ss_pred ccCcEEEeCCCccccCCccccccccc-cCCCCeeecCCCCCccCC
Q psy10674 91 FVNEYTLAENKTFHVKHFCCYECDKE-LCNQSYIPVTESRPGQDS 134 (138)
Q Consensus 91 ~~~~~~~~~~~~~H~~CF~C~~C~~~-l~~~~f~~~~~~~~y~~~ 134 (138)
+.++. |.++ |.++.|++.+ ++|||..
T Consensus 74 --~~~~~---------------~~~~~~~g~~f~~~~-~~~~C~~ 100 (114)
T 1j2o_A 74 --GDVMV---------------VGEPTLMGGEFGDED-ERLITRL 100 (114)
T ss_dssp --CSCCC---------------SSCSSTTSSBCCCSS-SCCCEEE
T ss_pred --CceeE---------------cCCccCCCCeeEEcC-CEeecch
Confidence 22221 3344 6688999999 9999964
No 11
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-20 Score=111.90 Aligned_cols=68 Identities=19% Similarity=0.347 Sum_probs=61.7
Q ss_pred CCeeecHHHHHhhcCCCcccccCccccc-CcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccCC
Q psy10674 65 KGNVYCLRDYATMLDIPRCHACDELIFV-NEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDS 134 (138)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~-~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~ 134 (138)
+|++||+.||.++++ ++|++|+++|.+ +.++.++++.||++||+|..|+++|.+..|+..+ |+|||..
T Consensus 1 ~g~~yC~~~y~~~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~-~~~~C~~ 69 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFA-NTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQD-SELLCND 69 (82)
T ss_dssp CCCCCCCCCCCCCCS-CBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEET-TEEEETT
T ss_pred CCceechhHhCcccC-CcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeC-CEEECHH
Confidence 578999999999995 899999999983 5566689999999999999999999999999998 9999965
No 12
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.76 E-value=1e-18 Score=120.87 Aligned_cols=89 Identities=22% Similarity=0.468 Sum_probs=75.6
Q ss_pred CeeecCCCcCcCCcccccccccccCCCeEEEe------------------------------------------------
Q psy10674 1 YTLAENKTFHVKHFCCYECDKKVQFENYTGKI------------------------------------------------ 32 (138)
Q Consensus 1 ~~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~------------------------------------------------ 32 (138)
+|.|+|+.||++||+|..|+++|....++...
T Consensus 22 ~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~ 101 (192)
T 1b8t_A 22 EVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPT 101 (192)
T ss_dssp CEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred EEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCC
Confidence 36799999999999999999999866544321
Q ss_pred ---------------------------ccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674 33 ---------------------------TQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85 (138)
Q Consensus 33 ---------------------------~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~ 85 (138)
+.+.+++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|.+
T Consensus 102 ~~~~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~-~kc~~ 180 (192)
T 1b8t_A 102 NPNASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG-PKGFG 180 (192)
T ss_dssp CCCCCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC-CCCCC
T ss_pred CcCccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcC-CcCCC
Confidence 11235677999999999999999987789999999999999999995 89999
Q ss_pred cCccc
Q psy10674 86 CDELI 90 (138)
Q Consensus 86 C~~~I 90 (138)
|++++
T Consensus 181 C~~~~ 185 (192)
T 1b8t_A 181 FGQGA 185 (192)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 99987
No 13
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=1.3e-19 Score=108.73 Aligned_cols=66 Identities=17% Similarity=0.327 Sum_probs=60.4
Q ss_pred CCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 65 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+|++||++||.+++ +++|++|+++|.++ ++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 1 gg~~yC~~cy~~~~-~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~ 66 (80)
T 2cuq_A 1 GSSGSSGPCYENKF-APRCARCSKTLTQG-GVTYRDQPWHRECLVCTGCQTPLAGQQFTSRD-EDPYCV 66 (80)
T ss_dssp CCCCSCCCCCCCCS-SCCCTTTCCCCCSC-CEESSSSEECTTTCBCSSSCCBCTTCCEEECS-SSEEEH
T ss_pred CCcEEcHHHHcccc-CCcCCCCCCEecCc-EEEECCchhhhhhCCcccCCCcCCCCeeEeEC-CEEECH
Confidence 57899999999998 48999999999775 67799999999999999999999988999988 999994
No 14
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.75 E-value=1.5e-19 Score=108.35 Aligned_cols=66 Identities=21% Similarity=0.517 Sum_probs=60.2
Q ss_pred CCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 65 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
++++||++||.+++ +++|++|+++|.+ +++.++++.||++||+|..|+++|.+..|+..+ |+|||.
T Consensus 1 gg~~yC~~~y~~~~-~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~ 66 (80)
T 1x3h_A 1 GSSGSSGKDFLAMF-SPKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFSTGSFFELD-GRPFCE 66 (80)
T ss_dssp CCCCCCCCCCCCCC-SCBCTTTCCBCCS-SCEEETTEEECTTTCBCSSSCCBSCSSCCEESS-SCEECH
T ss_pred CCCccchhHHhhhc-CCccccCCCeecc-eeEEECCCeEecCcCChhhCCCCCCCCcEEeEC-CEEECH
Confidence 47899999999999 4899999999987 566799999999999999999999988899988 999994
No 15
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=4.5e-19 Score=106.56 Aligned_cols=66 Identities=18% Similarity=0.283 Sum_probs=58.8
Q ss_pred CCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 65 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
++++||++||. ++ +++|++|+++|.+ .++.|+++.||++||+|..|+++|.+..|+..++|+|||.
T Consensus 2 ~g~~yC~~~y~-~~-~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~ 67 (81)
T 2dlo_A 2 SSGSSGEGCYV-AT-LEKCATCSQPILD-RILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCI 67 (81)
T ss_dssp CCCCCCCCCCC-SS-CCBCTTTCCBCCS-CCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEH
T ss_pred cCCEECHHHhh-cC-CCccccCCCeecc-eeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECH
Confidence 68999999998 55 5899999999985 4777999999999999999999999988988744999984
No 16
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=5.6e-19 Score=106.33 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=60.4
Q ss_pred CCeeecHHHHHhhcCCCcccccCcccccCc-EEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 65 KGNVYCLRDYATMLDIPRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~-~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
++.+||++||.++++ ++|++|+++|.+++ ++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 1 ~~~~yC~~cy~~~~~-~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~ 68 (82)
T 1x63_A 1 GSSGSSGKCTTREDS-PKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKG-EDFYCV 68 (82)
T ss_dssp CCSCCCCCCCSCCCS-CBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEET-TEEEEH
T ss_pred CCCcCchhHHccccC-CcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeC-CEEECH
Confidence 468999999999984 89999999998643 57799999999999999999999988999988 999994
No 17
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=9.6e-19 Score=105.09 Aligned_cols=66 Identities=18% Similarity=0.347 Sum_probs=57.9
Q ss_pred CCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccC-CCCeee-cCCCCCccC
Q psy10674 65 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC-NQSYIP-VTESRPGQD 133 (138)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~-~~~~~~y~~ 133 (138)
++.+||+.||.++++ ++|++|+++|. +.++.|+++.||++||+|..|+++|. +..|++ .+ |+|||.
T Consensus 1 g~~~yC~~~y~~~~~-~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~-~~~~C~ 68 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFG-EFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQH-ATLYCG 68 (81)
T ss_dssp CCCCCCCCCSSCCSS-CBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSS-SCEEEH
T ss_pred CCCccchhHHhhhcC-CcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeC-CEEECH
Confidence 367899999999995 89999999998 45677999999999999999999997 677885 55 999994
No 18
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.71 E-value=8e-18 Score=99.89 Aligned_cols=71 Identities=25% Similarity=0.472 Sum_probs=62.4
Q ss_pred cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecH-HHHHhhcCCCcccccCcccc
Q psy10674 14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCL-RDYATMLDIPRCHACDELIF 91 (138)
Q Consensus 14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~-~c~~~~~~~~~C~~C~~~I~ 91 (138)
++|..|+++|.+++.+.. +++.||++||+|..|+++|.+..|+.+++++||+ .||.++++ ++|.+|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~-~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTS------LGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG-PKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEE------TTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS-CCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEE------CCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC-ccCCCcCCcee
Confidence 479999999997777654 3559999999999999999888899999999999 69999995 89999997763
No 19
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.68 E-value=2.3e-17 Score=99.04 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=53.7
Q ss_pred cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCccc
Q psy10674 11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELI 90 (138)
Q Consensus 11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I 90 (138)
....+|..|+++|.+++.+.. .++.||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|.+|++..
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~c~gcg~g~ 77 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQC------DGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG-PKGYGYGQGA 77 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEE------TTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC-----------
T ss_pred CCCCcCcCcCccccCceeEEe------CCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC-CcccccCCcc
Confidence 345789999999987776654 356999999999999999988889999999999999999995 8999999765
No 20
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.4e-17 Score=100.02 Aligned_cols=66 Identities=23% Similarity=0.341 Sum_probs=55.9
Q ss_pred CeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 66 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 66 ~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+.+||+.||.++++ ++|++|+++|.+ +++.|+++.||++||+|..|+++|....++..+++.+||.
T Consensus 2 ~~~yC~~dy~~~~~-~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~ 67 (81)
T 1v6g_A 2 SSGSSGLDYQRLYG-TRCFSCDQFIEG-EVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQ 67 (81)
T ss_dssp CCCCCCSCGGGSCC-CBCTTTCCBCCS-CCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEH
T ss_pred CCCcchHHHHhHhC-CcCccccCEecc-ceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEECh
Confidence 46899999999995 899999999985 5677999999999999999999998666666662446874
No 21
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.65 E-value=3.5e-17 Score=112.80 Aligned_cols=108 Identities=19% Similarity=0.284 Sum_probs=74.8
Q ss_pred eeecCCCcCcCCcccccccccccC--CCeEEEec-----------------------------c-ccCCCCCCcccCccc
Q psy10674 2 TLAENKTFHVKHFCCYECDKKVQF--ENYTGKIT-----------------------------Q-SQESEVLWHPQCFVC 49 (138)
Q Consensus 2 ~~a~g~~~h~~~~~C~~C~~~i~~--~~~~~~~~-----------------------------~-~~~~~~~~H~~Cf~C 49 (138)
|.|+|+.||++||+|..|+++|.. ..++...+ + ..+.+..||++||+|
T Consensus 21 ~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C 100 (188)
T 1rut_X 21 LYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTC 100 (188)
T ss_dssp EEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGGGCBC
T ss_pred EEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCCCCeE
Confidence 689999999999999999999874 23332211 0 125678999999999
Q ss_pred ccCCcccc-CCceeeeCCeeecHHHHHhhcCCCcccccCccc----ccCcEE-----EeCCCccccCCccc
Q psy10674 50 STCDELLV-DLMYFHYKGNVYCLRDYATMLDIPRCHACDELI----FVNEYT-----LAENKTFHVKHFCC 110 (138)
Q Consensus 50 ~~C~~~l~-~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I----~~~~~~-----~~~~~~~H~~CF~C 110 (138)
..|+++|. +..|+..++++||..||.+++ .++|...+..- ...+++ ..+|..+|++..+.
T Consensus 101 ~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~-~~~~~~~g~~~~~~~~~~~v~vvgep~l~g~~~~~~~~r~ 170 (188)
T 1rut_X 101 STCRNRLVPGDRFHYINGSLFCEHDRPTAL-INGHLNSGGSGGSGGSGGDVMVVGEPTLMGGEFGDEDERL 170 (188)
T ss_dssp TTTCCBCCTTCEEEEETTEEEEGGGCCTTT-C----------------CCCEECCCCEETTCCCCCTTEEE
T ss_pred CCCCCCCCCCCeEEEECCeEECHHHHHHHh-cccccccCCCCcccccCCcccccCCCcccCCCCCCCCCce
Confidence 99999995 567889999999999999988 47887776521 111111 25678888888776
No 22
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.65 E-value=6.1e-17 Score=104.79 Aligned_cols=77 Identities=32% Similarity=0.780 Sum_probs=64.5
Q ss_pred eeecCCCcCcCCcccccccccccCCCeEEEecc----------------------------ccCCCCCCc--ccCccccc
Q psy10674 2 TLAENKTFHVKHFCCYECDKKVQFENYTGKITQ----------------------------SQESEVLWH--PQCFVCST 51 (138)
Q Consensus 2 ~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~~~----------------------------~~~~~~~~H--~~Cf~C~~ 51 (138)
+.|+|+.||++||+|..|+++|.+..++...++ +.+++..|| ++||+|..
T Consensus 19 ~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~ 98 (126)
T 2xqn_T 19 TQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSC 98 (126)
T ss_dssp EEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTT
T ss_pred EeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCC
Confidence 689999999999999999999986555443221 235678999 99999999
Q ss_pred CCccccCCceeeeCCeeecHHHHHhhc
Q psy10674 52 CDELLVDLMYFHYKGNVYCLRDYATML 78 (138)
Q Consensus 52 C~~~l~~~~~~~~~~~~yC~~c~~~~~ 78 (138)
|+++|.+..|+..++++||..++.+++
T Consensus 99 C~~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 99 CSKCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp TCCBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CCCccCCCeeEeECCEEcchHHhhhhc
Confidence 999999888999999999998887765
No 23
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=2.8e-16 Score=92.14 Aligned_cols=66 Identities=18% Similarity=0.466 Sum_probs=56.6
Q ss_pred cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674 14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85 (138)
Q Consensus 14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~ 85 (138)
.+|..|+++|.+.+.++.+ ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a-----~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~C~~ 71 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY-----KGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA-SGPSS 71 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE-----TTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTS-SCCCC
T ss_pred CCCccCCCcccCCceEEEE-----CcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhC-CCCCC
Confidence 5799999999976544443 466999999999999999988889999999999999999995 88863
No 24
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=2.7e-16 Score=92.20 Aligned_cols=67 Identities=24% Similarity=0.518 Sum_probs=57.0
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~ 85 (138)
..+|..|+++|.+++.++.+ ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a-----~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~C~~ 71 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEY-----GGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA-SGPSS 71 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECS-----TTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTS-CCCCC
T ss_pred CCCCccCCCccccCccEEEE-----CccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHcc-CcCCC
Confidence 35799999999975444432 577999999999999999988889999999999999999995 78863
No 25
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.3e-16 Score=94.58 Aligned_cols=67 Identities=19% Similarity=0.474 Sum_probs=57.8
Q ss_pred cccccccccccC---CCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccC
Q psy10674 14 FCCYECDKKVQF---ENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACD 87 (138)
Q Consensus 14 ~~C~~C~~~i~~---~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~ 87 (138)
.+|..|+++|.+ .+++.. +++.||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|+.++
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a------~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~-~~C~~~s 75 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF------QDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDT-DISGPSS 75 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE------TTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCC-CSSSSSC
T ss_pred CCCccCCCcccCCCCceeEEE------CCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhC-CcCCCCC
Confidence 578999999994 255444 466999999999999999988889999999999999999995 8998875
No 26
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=3.9e-16 Score=92.51 Aligned_cols=69 Identities=25% Similarity=0.436 Sum_probs=59.4
Q ss_pred CcCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecH-HHHHhhcCCCcccc
Q psy10674 10 HVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCL-RDYATMLDIPRCHA 85 (138)
Q Consensus 10 h~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~-~c~~~~~~~~~C~~ 85 (138)
.....+|..|+++|.+++.+.. +++.||++||+|..|+++|.+..|+.+++++||+ .||.++++ ++|.+
T Consensus 6 ~~~~~~C~~C~~~I~~~~~v~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~-~kc~g 75 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAEKVSS------LGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG-SGPSS 75 (76)
T ss_dssp CCCCCBCTTTCCBCCTTTEEEE------TTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSC-SSCSC
T ss_pred CCCCCCCcCCCCEeECCeEEEE------CCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcc-cccCC
Confidence 3445789999999997777654 3569999999999999999888899999999999 79999995 78863
No 27
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.63 E-value=1.9e-16 Score=103.11 Aligned_cols=77 Identities=18% Similarity=0.421 Sum_probs=62.9
Q ss_pred eeecCCCcCcCCcccccccccccC--CCeEEEecc------------------------------ccCCCCCCcccCccc
Q psy10674 2 TLAENKTFHVKHFCCYECDKKVQF--ENYTGKITQ------------------------------SQESEVLWHPQCFVC 49 (138)
Q Consensus 2 ~~a~g~~~h~~~~~C~~C~~~i~~--~~~~~~~~~------------------------------~~~~~~~~H~~Cf~C 49 (138)
|.|+|+.||++||+|..|+++|.+ ..++...++ ..+.+..||++||+|
T Consensus 18 ~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C 97 (131)
T 2xjy_A 18 LKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 97 (131)
T ss_dssp EEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCBC
T ss_pred EEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceECccCccc
Confidence 689999999999999999999963 234332111 125678999999999
Q ss_pred ccCCccc-cCCceeeeCCeeecHHHHHhhc
Q psy10674 50 STCDELL-VDLMYFHYKGNVYCLRDYATML 78 (138)
Q Consensus 50 ~~C~~~l-~~~~~~~~~~~~yC~~c~~~~~ 78 (138)
..|+++| .+..|+..++++||..||.+++
T Consensus 98 ~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~ 127 (131)
T 2xjy_A 98 AACQKHFCVGDRYLLINSDIVCEQDIYEWT 127 (131)
T ss_dssp TTTCCBCCTTCEEEEETTEEEEGGGHHHHH
T ss_pred CCCCCCCCCCCEEEEECCEEEcHHHHHHHh
Confidence 9999999 4667999999999999998876
No 28
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=4.1e-16 Score=92.57 Aligned_cols=67 Identities=22% Similarity=0.587 Sum_probs=55.9
Q ss_pred CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccc
Q psy10674 12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH 84 (138)
Q Consensus 12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~ 84 (138)
...+|..|+++|.+.+.++.+ .+..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|+
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a-----~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-~~C~ 76 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS-----NGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA-PCWI 76 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE-----TTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCC-CC--
T ss_pred CCCCchhcCCccCCCceEEEe-----CccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhh-cccC
Confidence 457899999999865555433 466999999999999999988789999999999999999995 7885
No 29
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=4.1e-16 Score=93.37 Aligned_cols=66 Identities=24% Similarity=0.563 Sum_probs=57.0
Q ss_pred CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674 12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85 (138)
Q Consensus 12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~ 85 (138)
...+|..|+++|.+++++.. ++..||++||+|..|+++|.+ .|+.+++++||+.||.++++ ++|++
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a------~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg-~~C~~ 79 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA------LDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFG-SGPSS 79 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE------TTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTT-CCSTT
T ss_pred CCCCCcCcCCeeCCCeEEEE------CCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcC-CCCCC
Confidence 35689999999987777655 355999999999999999986 58999999999999999996 78864
No 30
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=4.5e-16 Score=90.58 Aligned_cols=65 Identities=23% Similarity=0.593 Sum_probs=56.2
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~ 85 (138)
..+|..|+++|. ++.+.. ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|++
T Consensus 5 ~~~C~~C~~~I~-~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~C~g 69 (69)
T 2cur_A 5 SSGCVKCNKAIT-SGGITY------QDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS-GPSSG 69 (69)
T ss_dssp CCCCSSSCCCCC-TTCEEE------TTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT-CSCCC
T ss_pred cCCCcccCCEeC-cceEEE------CccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc-CCCCC
Confidence 467999999998 455544 466999999999999999988889999999999999999995 79864
No 31
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=7e-16 Score=89.96 Aligned_cols=65 Identities=23% Similarity=0.557 Sum_probs=55.7
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~ 85 (138)
..+|..|+++|. ++.+.. +++.||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|++
T Consensus 5 ~~~C~~C~~~I~-~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~c~~ 69 (70)
T 2d8z_A 5 SSGCVQCKKPIT-TGGVTY------REQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYA-SGPSS 69 (70)
T ss_dssp CCBCSSSCCBCC-SSEEES------SSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTC-CCCTT
T ss_pred CCCCcccCCeec-cceEEE------CccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhc-cccCC
Confidence 357999999998 455433 567999999999999999988889999999999999999995 78863
No 32
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=1.1e-15 Score=89.52 Aligned_cols=67 Identities=24% Similarity=0.450 Sum_probs=55.9
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccccc
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHAC 86 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C 86 (138)
..+|..|+++|.+.+.++.+ ++..||++||+|..|+++|.+..|+.+++++||+.||.+++ .+|+.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a-----~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~--~~~~~~ 71 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA-----LDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATL--ESGPSS 71 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC-----SSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH--HTCSSC
T ss_pred CCCCccCCCccCCCceEEEE-----CCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHH--ccCCCC
Confidence 46899999999865544332 46699999999999999998888999999999999999988 466654
No 33
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=1.1e-15 Score=93.44 Aligned_cols=66 Identities=20% Similarity=0.533 Sum_probs=57.1
Q ss_pred CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674 12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85 (138)
Q Consensus 12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~ 85 (138)
...+|..|+++|. ++++.. ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|+.
T Consensus 24 ~~~~C~~C~~~I~-~~~v~a------~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~-~~c~s 89 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLVA------LGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA-SGPSS 89 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEEE------TTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTS-CCCCC
T ss_pred CCCCCccCCCEec-ceEEEE------CCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcC-CCCCC
Confidence 3568999999997 666654 456999999999999999988889999999999999999995 78863
No 34
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.2e-15 Score=89.38 Aligned_cols=65 Identities=20% Similarity=0.434 Sum_probs=54.0
Q ss_pred CcccccccccccC--CCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcc
Q psy10674 13 HFCCYECDKKVQF--ENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRC 83 (138)
Q Consensus 13 ~~~C~~C~~~i~~--~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C 83 (138)
..+|..|+++|.+ ++.++.+ +++.||++||+|..|+++|.+..|+.+++++||+.||.++++ +++
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a-----~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~-p~~ 71 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISF-----EERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISG-PSS 71 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEEC-----SSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCC-SSC
T ss_pred CCCCcCCCccccCCCCcceEEE-----CCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccC-CCC
Confidence 4689999999995 3333332 466999999999999999988889999999999999999985 554
No 35
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=7.8e-16 Score=91.23 Aligned_cols=56 Identities=16% Similarity=0.332 Sum_probs=50.3
Q ss_pred hcCCCcccccCccccc---CcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccCC
Q psy10674 77 MLDIPRCHACDELIFV---NEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDS 134 (138)
Q Consensus 77 ~~~~~~C~~C~~~I~~---~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~ 134 (138)
++ +++|++|+++|.+ .+++.++++.||++||+|..|+++|.+..|++.+ |+|||..
T Consensus 3 ~~-~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~-g~~yC~~ 61 (76)
T 1x68_A 3 SG-SSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQN-KEIFCQK 61 (76)
T ss_dssp TC-CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEET-TEEEETT
T ss_pred cc-CCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeEC-CEEECHH
Confidence 45 4899999999985 3677799999999999999999999999999998 9999975
No 36
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.59 E-value=1.5e-15 Score=102.93 Aligned_cols=105 Identities=16% Similarity=0.302 Sum_probs=71.7
Q ss_pred eeecCCCcCcCCcccccccccccCCCeEEEecc----------------------------ccCCCCCCcccCcccccCC
Q psy10674 2 TLAENKTFHVKHFCCYECDKKVQFENYTGKITQ----------------------------SQESEVLWHPQCFVCSTCD 53 (138)
Q Consensus 2 ~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~~~----------------------------~~~~~~~~H~~Cf~C~~C~ 53 (138)
|.|+|+.||++||+|..|+++|....+ ...++ ..+++..||++||+|..|+
T Consensus 22 ~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~ 100 (169)
T 2rgt_A 22 LKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCK 100 (169)
T ss_dssp EECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTC
T ss_pred EEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeecccccccccccccccccccCCCcEEEEcCCceEeeCCCcCCCCC
Confidence 679999999999999999999985443 22111 1256789999999999999
Q ss_pred cccc-CCceee-eCCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCcc
Q psy10674 54 ELLV-DLMYFH-YKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFC 109 (138)
Q Consensus 54 ~~l~-~~~~~~-~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~ 109 (138)
++|. +..|+. .++++||..||.+++. ..+.. ...-..+..+.+.....|...|.
T Consensus 101 ~~L~~g~~f~~~~~g~~~C~~c~~~~~~-~~~~~-~~~~rprt~~~~~q~~~l~~~f~ 156 (169)
T 2rgt_A 101 RQLATGDEFYLMEDSRLVCKADYETAKQ-GGSGG-SGGSGGGTPMVAASPERHDGGLQ 156 (169)
T ss_dssp CBCCTTCEEEECTTSCEEEHHHHHHHHH-CC-----------EEEECCCCEECCSSCC
T ss_pred CCCCCCCceEEccCCeEECHHHHHHHhh-ccCCC-CCCcCCCCcccHHHHHHHHHHHh
Confidence 9996 455654 6899999999988763 23321 11112223444666677777665
No 37
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.58 E-value=4.8e-16 Score=89.67 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=48.1
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|++|+++|. ++++.++|+.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 5 ~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~ 56 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERK-GLAYCE 56 (66)
T ss_dssp CCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEET-TEEECH
T ss_pred CCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeEC-CcEECH
Confidence 479999999998 5677799999999999999999999999999998 999995
No 38
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=5.3e-16 Score=91.32 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=48.3
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccC-CCCeeecCCCCCccCC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC-NQSYIPVTESRPGQDS 134 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~-~~~f~~~~~~~~y~~~ 134 (138)
+++|++|+++|.+ .++.|+++.||++||+|..|+++|. +..|++.+ |+|||..
T Consensus 5 ~~~C~~C~~~I~~-~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~-~~~yC~~ 58 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQG-SSIWHPA 58 (73)
T ss_dssp CCSCSSSCCCCSS-CCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEET-TEEECTT
T ss_pred cCCcccCCCEecC-eeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeC-CEEEChH
Confidence 4899999999977 5667999999999999999999999 88899988 9999975
No 39
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=8.2e-16 Score=91.11 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=49.6
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|++|+++|.+++++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~ 61 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHD-GKPFCH 61 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEET-TEEECT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeEC-CEEecc
Confidence 47999999999877888899999999999999999999998999998 999996
No 40
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.2e-16 Score=92.89 Aligned_cols=66 Identities=18% Similarity=0.420 Sum_probs=56.1
Q ss_pred cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674 14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85 (138)
Q Consensus 14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~ 85 (138)
.+|..|+++|.+++.++.+ ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|++
T Consensus 16 ~~C~~C~~~I~~~~~~~~a-----~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~-~~C~~ 81 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFY-----EDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFS-SGPSS 81 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCC-----SSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGG-GSSCC
T ss_pred CcCccCCCccccCcEEEEe-----CCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcC-CCCCC
Confidence 5799999999854444332 467999999999999999988889999999999999999995 78864
No 41
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=1.4e-15 Score=89.21 Aligned_cols=53 Identities=19% Similarity=0.399 Sum_probs=48.3
Q ss_pred CCcccccCccccc---CcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFV---NEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~---~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|.+|+++|.+ +.++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~-g~~yC~ 60 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTER-DDILCP 60 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECS-SSEECH
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeEC-CEEECh
Confidence 5799999999985 3677799999999999999999999999999988 999994
No 42
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=3.7e-15 Score=89.43 Aligned_cols=66 Identities=21% Similarity=0.483 Sum_probs=56.4
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccc
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH 84 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~ 84 (138)
..+|..|+++|.+++.++.+ ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ +++.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a-----~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~~~ 80 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY-----KGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFA-SGPS 80 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC-----SSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTS-CCCS
T ss_pred CCcCccCCcccccCceEEEE-----CccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhC-CCCC
Confidence 46899999999976654433 467999999999999999988889999999999999999995 6664
No 43
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.58 E-value=7e-16 Score=88.80 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=48.6
Q ss_pred CCcccccCccccc-CcEEEeCCCccc--cCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFV-NEYTLAENKTFH--VKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~-~~~~~~~~~~~H--~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|++|+++|.+ +.++.++|+.|| ++||+|..|+++|.+..|++.+ |+|||.
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~-g~~yC~ 57 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVE-GMVFCS 57 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEET-TEEESS
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEEC-CEEecC
Confidence 4799999999986 367779999999 9999999999999999999999 999994
No 44
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=2.2e-15 Score=90.03 Aligned_cols=64 Identities=27% Similarity=0.629 Sum_probs=55.8
Q ss_pred cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674 14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85 (138)
Q Consensus 14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~ 85 (138)
.+|..|+++|.+ +.+.. ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|++
T Consensus 16 ~~C~~C~~~I~~-~~v~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~-~~C~~ 79 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLSA------MDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRG-SGPSS 79 (80)
T ss_dssp CBCTTTCCBCCS-SCEEE------TTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHS-SSCCC
T ss_pred CccccCCCeecc-eeEEE------CCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcC-CCCCC
Confidence 589999999995 55544 466999999999999999988789999999999999999996 78864
No 45
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.57 E-value=1.6e-15 Score=87.50 Aligned_cols=60 Identities=22% Similarity=0.581 Sum_probs=52.6
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcC
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD 79 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~ 79 (138)
..+|..|+++|. ++.+.. ++..||++||+|..|+++|.+..|+.+++++||+.||.++++
T Consensus 5 ~~~C~~C~~~I~-~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 64 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVVNA------MGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG 64 (66)
T ss_dssp CCEETTTTEECC-SCEECC------TTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCS
T ss_pred CCCCcccCCEec-ceEEEE------CccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhC
Confidence 367999999999 665433 567999999999999999988889999999999999999985
No 46
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.5e-15 Score=89.92 Aligned_cols=52 Identities=23% Similarity=0.511 Sum_probs=48.5
Q ss_pred CcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
|+|++|+++|.+++++.++|+.||++||+|..|+++|.+..|+..+ |+|||.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~ 52 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHE-GKPYCN 52 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEET-TEEEET
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcC-CeEeeC
Confidence 5899999999877888899999999999999999999988999988 999996
No 47
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.8e-15 Score=90.56 Aligned_cols=53 Identities=32% Similarity=0.513 Sum_probs=48.2
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccCC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQDS 134 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~~ 134 (138)
.++|.+|+++|.+++++.++++.||++||+|..|+++|.+ .|++.+ |+|||..
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~-g~~yC~~ 67 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKD-GVPYCES 67 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEET-TEEECTT
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEEC-CEEECHH
Confidence 4799999999987778889999999999999999999986 698888 9999964
No 48
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=6.1e-15 Score=88.32 Aligned_cols=67 Identities=16% Similarity=0.429 Sum_probs=55.6
Q ss_pred cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeee-CCeeecHHHHHhhcCCCcccc
Q psy10674 11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHY-KGNVYCLRDYATMLDIPRCHA 85 (138)
Q Consensus 11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~~~~yC~~c~~~~~~~~~C~~ 85 (138)
....+|..|+++|. ++++.. ++..||++||+|..|+++|.+..|+.. ++++||+.||.++++ ++|++
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~-~~C~~ 80 (81)
T 2dlo_A 13 ATLEKCATCSQPIL-DRILRA------MGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA-SGPSS 80 (81)
T ss_dssp SSCCBCTTTCCBCC-SCCEEE------TTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTT-SSSCC
T ss_pred cCCCccccCCCeec-ceeEEE------CCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhc-CcCCC
Confidence 34568999999998 455444 466999999999999999988777765 789999999999995 78864
No 49
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=2.9e-15 Score=87.77 Aligned_cols=53 Identities=26% Similarity=0.508 Sum_probs=48.3
Q ss_pred CCcccccCcccccC-cEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|.+|+++|.+. .++.++++.||++||+|..|+++|.+..|+..+ |+|||.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~ 58 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVE-RRAYCE 58 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESS-SCEEEH
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeC-CeEECH
Confidence 47999999999864 477799999999999999999999998999998 999985
No 50
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=4.1e-15 Score=91.05 Aligned_cols=68 Identities=24% Similarity=0.486 Sum_probs=58.6
Q ss_pred CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccccc
Q psy10674 12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHAC 86 (138)
Q Consensus 12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C 86 (138)
...+|..|+++|.+.+.+.. ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|..+
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-~kc~~~ 81 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLA------NQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK-SKGNYD 81 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEEC------SSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC-CCSCCC
T ss_pred CCCcCccCCCccCCceeEEE------CCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC-CCcCcc
Confidence 35789999999997676543 467999999999999999988789999999999999999995 788733
No 51
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.55 E-value=6.6e-15 Score=86.04 Aligned_cols=63 Identities=22% Similarity=0.609 Sum_probs=54.4
Q ss_pred cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhc
Q psy10674 11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML 78 (138)
Q Consensus 11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~ 78 (138)
+...+|..|+++|.+++.++.+ .+..||++||+|..|+++|.+..|+.+++++||+.||.++|
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~-----~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf 71 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNS-----NGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEE-----TTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHT
T ss_pred cCCccchhcCccccCCceEEEe-----CcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhh
Confidence 3456899999999977766543 46699999999999999998778999999999999999887
No 52
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=4.5e-15 Score=88.68 Aligned_cols=65 Identities=18% Similarity=0.494 Sum_probs=55.7
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccc
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~ 85 (138)
..+|..|+++|.+ +.+.. ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ ++|+.
T Consensus 15 ~~~C~~C~~~I~~-~~v~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~-~~c~s 79 (80)
T 2cuq_A 15 APRCARCSKTLTQ-GGVTY------RDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFA-SGPSS 79 (80)
T ss_dssp SCCCTTTCCCCCS-CCEES------SSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTT-CSTTC
T ss_pred CCcCCCCCCEecC-cEEEE------CCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcC-CCCCC
Confidence 3679999999984 54433 567999999999999999988889999999999999999995 78863
No 53
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.55 E-value=2.4e-15 Score=88.07 Aligned_cols=55 Identities=18% Similarity=0.383 Sum_probs=49.5
Q ss_pred hcCCCcccccCcccccC-cEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 77 MLDIPRCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 77 ~~~~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
++ +++|++|+++|.+. .++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 3 ~~-~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~ 58 (72)
T 1x4k_A 3 SG-SSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKD-NQNFCV 58 (72)
T ss_dssp SC-CCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEET-TEEEEH
T ss_pred cc-CCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccC-CeEECH
Confidence 35 48999999999875 477799999999999999999999988999998 999985
No 54
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=4.2e-15 Score=86.38 Aligned_cols=52 Identities=21% Similarity=0.421 Sum_probs=47.6
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|++|+++|.+ +++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~ 56 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITYQDQPWHADCFVCVTCSKKLAGQRFTAVE-DQYYCV 56 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEETTEEECTTTTBCTTTCCBCTTSCEEECS-SCEEEH
T ss_pred cCCCcccCCEeCc-ceEEECccccccCcCEECCCCCCCCCCccEeEC-CEEECH
Confidence 5899999999976 466799999999999999999999999999998 999994
No 55
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=2.5e-15 Score=87.98 Aligned_cols=53 Identities=23% Similarity=0.439 Sum_probs=48.4
Q ss_pred CCcccccCcccccC-cEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|.+|+++|.+. .++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~ 58 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDK-GAHYCV 58 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEET-TEEEEH
T ss_pred CCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcC-CeEECH
Confidence 47999999999864 677799999999999999999999988999988 999985
No 56
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.54 E-value=2.4e-15 Score=90.15 Aligned_cols=53 Identities=21% Similarity=0.385 Sum_probs=48.8
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|.+|+++|.+++++.+.++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~ 59 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHD-AEVYCK 59 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEET-TEEECS
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeC-CEEECH
Confidence 47999999999877788899999999999999999999988899998 999995
No 57
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=2.9e-15 Score=87.30 Aligned_cols=52 Identities=25% Similarity=0.482 Sum_probs=47.4
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|.+|+++|.+ +++.++++.||++||+|..|+++|.+..|+..+ |+|||.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~-g~~yC~ 56 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKAMNNSWHPECFRCDLCQEVLADIGFVKNA-GRHLCR 56 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEETTEEECTTTSBCSSSCCBCSSSCCEEET-TEEECH
T ss_pred CCcCccCCCEecc-eEEEECcccccccCCEeCCCCCcCCCCccEeEC-CeEECH
Confidence 4799999999985 567799999999999999999999988899888 999995
No 58
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=8.9e-15 Score=89.16 Aligned_cols=66 Identities=23% Similarity=0.489 Sum_probs=55.9
Q ss_pred cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccc
Q psy10674 11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH 84 (138)
Q Consensus 11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~ 84 (138)
....+|..|+++|.+ +++.. ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ +++.
T Consensus 23 ~~~~~C~~C~~~I~~-~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~-p~~~ 88 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-AVVKA------RDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTS-GPSS 88 (89)
T ss_dssp CSCCBCTTTCCBCCS-CCEES------SSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSS-SCCC
T ss_pred CcCCCcccCCCEecc-cEEEE------CCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhC-CCCC
Confidence 345789999999994 55433 466999999999999999988789999999999999999995 6764
No 59
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=5.4e-15 Score=86.15 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=47.5
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|.+|+++|.+ +.+.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-~~~yC~ 56 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGVTYREQPWHKECFVCTACRKQLSGQRFTARD-DFAYCL 56 (70)
T ss_dssp CCBCSSSCCBCCS-SEEESSSSEEETTTSBCSSSCCBCTTSCCEESS-SSEECH
T ss_pred CCCCcccCCeecc-ceEEECccccCCCCCccCCCCCcCCcCceEeeC-CeEECH
Confidence 5799999999976 457799999999999999999999999999988 999994
No 60
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.54 E-value=4.2e-15 Score=89.34 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=48.3
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeee-cCCCCCccCC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIP-VTESRPGQDS 134 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~-~~~~~~y~~~ 134 (138)
+++|.+|+++|.+.++++++++.||++||+|..|+++|.+..|+. ..+|+|||..
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~ 70 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQ 70 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETT
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChH
Confidence 479999999998777777999999999999999999999988885 2349999964
No 61
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=1.4e-14 Score=84.39 Aligned_cols=60 Identities=23% Similarity=0.544 Sum_probs=52.2
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcC
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD 79 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~ 79 (138)
..+|..|+++|. ++++.. ++..||++||+|..|+++|.+..|+.+++++||+.||.++++
T Consensus 5 ~~~C~~C~~~I~-~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRVIKA------MNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp SSBCSSSCCBCC-SCCEEE------TTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred CCcCccCCCEec-ceEEEE------CcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 467999999998 555544 456999999999999999988888899999999999999985
No 62
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=3.7e-15 Score=88.93 Aligned_cols=66 Identities=20% Similarity=0.438 Sum_probs=55.5
Q ss_pred cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccc
Q psy10674 11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH 84 (138)
Q Consensus 11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~ 84 (138)
+...+|..|+++|.+ +++.. ++..||++||+|..|+++|.+..|+.+++++||+.||.++++ +++.
T Consensus 13 ~~~~~C~~C~~~I~~-~~~~a------~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~-p~g~ 78 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-VFVKL------RDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVS-GPSS 78 (79)
T ss_dssp CCCCCCSSSCCCCCS-SCEEC------SSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHS-SCCC
T ss_pred CCCCccccCCCCccC-cEEEE------CcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhC-CCCC
Confidence 345789999999994 55433 466999999999999999987789999999999999999995 6653
No 63
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.53 E-value=7.5e-15 Score=100.57 Aligned_cols=75 Identities=20% Similarity=0.518 Sum_probs=60.0
Q ss_pred eeecCCCcCcCCcccccccccccCCCeEEEecc----------------------------ccCCCCCCcccCcccccCC
Q psy10674 2 TLAENKTFHVKHFCCYECDKKVQFENYTGKITQ----------------------------SQESEVLWHPQCFVCSTCD 53 (138)
Q Consensus 2 ~~a~g~~~h~~~~~C~~C~~~i~~~~~~~~~~~----------------------------~~~~~~~~H~~Cf~C~~C~ 53 (138)
+.|+|+.||+.||+|..|+++|....+ ...++ ..+.+..||++||+|..|+
T Consensus 76 ~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~ 154 (182)
T 2jtn_A 76 LKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCK 154 (182)
T ss_dssp EEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTC
T ss_pred EEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCceEEecCCCCEEeCCCcCCCCC
Confidence 579999999999999999999986554 22211 1256779999999999999
Q ss_pred cccc-CCceee-eCCeeecHHHHHhh
Q psy10674 54 ELLV-DLMYFH-YKGNVYCLRDYATM 77 (138)
Q Consensus 54 ~~l~-~~~~~~-~~~~~yC~~c~~~~ 77 (138)
++|. +..|+. .++++||..||.++
T Consensus 155 ~~L~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 155 RQLATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp CCCCTTCEEEECTTSCEECHHHHHHH
T ss_pred CCCCCCCceEEccCCEEECHHHHHHh
Confidence 9996 455654 68999999999765
No 64
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.2e-14 Score=88.94 Aligned_cols=53 Identities=25% Similarity=0.518 Sum_probs=49.0
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
.++|.+|+++|.+.+++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~ 67 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLH-GRIYCK 67 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSS-SCCCCH
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeEC-CEEECH
Confidence 47999999999887888899999999999999999999988899888 999994
No 65
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.2e-14 Score=88.68 Aligned_cols=55 Identities=18% Similarity=0.460 Sum_probs=48.9
Q ss_pred hhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 76 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 76 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
..+ +++|++|+++|. ++++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 22 ~~~-~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~-g~~yC~ 76 (90)
T 2dar_A 22 GKR-TPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEK-GALYCE 76 (90)
T ss_dssp TTC-CCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESS-SCEECH
T ss_pred CCC-CCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeEC-CEEECH
Confidence 444 589999999996 4677799999999999999999999998999888 999994
No 66
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=3.1e-14 Score=84.89 Aligned_cols=65 Identities=23% Similarity=0.441 Sum_probs=53.5
Q ss_pred cCCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCccc
Q psy10674 11 VKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH 84 (138)
Q Consensus 11 ~~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~ 84 (138)
....+|..|+++|. ++.+.. ++..||++||+|..|+++|.+. ++.+++++||..||.+++ ++.+.
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a------~~~~~H~~CF~C~~C~~~L~~~-~f~~~g~~yC~~cy~~~f-~p~~s 77 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLIF------KNDPYHPDHFNCANCGKELTAD-ARELKGELYCLPCHDKMG-VSGPS 77 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCCC------SSSCCCTTTSBCSSSCCBCCTT-CEEETTEEECHHHHHTTS-CCSSC
T ss_pred cCCCCCccCCCEec-ceEEEE------CcceeCCCCCEeCCCCCccCCC-CEeECCEEeCHHHHHHhC-CCCCC
Confidence 34578999999999 555433 5679999999999999999876 459999999999999998 45543
No 67
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=93.46 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=48.4
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccC--CCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC--NQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~--~~~f~~~~~~~~y~~ 133 (138)
+++|++|+++|.++.++.|+++.||++||+|..|+++|. +..|+..+ |+|||.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~d-g~~yC~ 115 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKS-GMILCR 115 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSS-SCCBCH
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEEC-CEEeCH
Confidence 479999999999877788999999999999999999997 57899988 999995
No 68
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.50 E-value=2.9e-14 Score=91.87 Aligned_cols=76 Identities=18% Similarity=0.404 Sum_probs=63.2
Q ss_pred ccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccc-cCCceeeeCCeeecHHHHHhhcCCCcccccCcccccC
Q psy10674 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELL-VDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVN 93 (138)
Q Consensus 15 ~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l-~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~ 93 (138)
+|..|+++|...+.++.+ ++..||++||+|..|+++| .+..|+..++++||..||.++++ ++|..++..+...
T Consensus 10 ~C~~C~~~I~~~e~~~~a-----~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~-~~~~~~~~~~~~~ 83 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV-----KDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK-INGGSGGSGGSGG 83 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC-----SSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH-HHTCCCCCCSCCS
T ss_pred cccCCCCeecCCceEEEE-----CCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc-cccCCCCCCCccC
Confidence 799999999975554332 5779999999999999999 55679999999999999999994 8999988887655
Q ss_pred cEE
Q psy10674 94 EYT 96 (138)
Q Consensus 94 ~~~ 96 (138)
+..
T Consensus 84 ~~~ 86 (123)
T 2l3k_A 84 DVM 86 (123)
T ss_dssp CCE
T ss_pred CCc
Confidence 443
No 69
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=1.7e-14 Score=91.85 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=48.2
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccCC--CCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCN--QSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~--~~f~~~~~~~~y~~ 133 (138)
+++|++|+++|.+++++.|+++.||++||+|..|+++|.. ..|+..+ |+|||.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~-g~~yC~ 57 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKL-GRKLCR 57 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBT-TBCCCH
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEEC-Ceeech
Confidence 4799999999998777889999999999999999999984 6899998 999994
No 70
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=5.1e-15 Score=88.32 Aligned_cols=52 Identities=17% Similarity=0.397 Sum_probs=47.5
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|.+|+++|.+ +++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 15 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~ 66 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVE-DQIYCE 66 (79)
T ss_dssp CCCCSSSCCCCCS-SCEECSSCEECTTTTSCSSSCCCHHHHCCEESS-SCEECH
T ss_pred CCccccCCCCccC-cEEEECcceeCcCcCeeCCCCCCCCCCCeEeEC-CEEECH
Confidence 4799999999987 467799999999999999999999988899998 999994
No 71
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.49 E-value=6.1e-15 Score=86.18 Aligned_cols=53 Identities=15% Similarity=0.333 Sum_probs=47.8
Q ss_pred CCcccccCcccccCcE-EEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEY-TLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~-~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
.++|++|+++|.+.+. +.+.++.||++||+|..|+++|.+..|+..+ |+|||.
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~ 64 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFE-GRKYCE 64 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEET-TEEECH
T ss_pred CccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeEC-CeEeCH
Confidence 5799999999987664 5599999999999999999999987899998 999995
No 72
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=1.2e-14 Score=86.10 Aligned_cols=53 Identities=13% Similarity=0.335 Sum_probs=47.6
Q ss_pred CCcccccCccccc-CcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFV-NEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~-~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
.++|++|+++|.+ +.++.+.|+.||++||+|..|+++|.+..|+..+ |+|||.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~ 64 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFE-GRKYCE 64 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEET-TEEECH
T ss_pred CCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeEC-CeEeCH
Confidence 4799999999985 4466699999999999999999999988899998 999995
No 73
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.9e-14 Score=83.91 Aligned_cols=58 Identities=21% Similarity=0.456 Sum_probs=49.3
Q ss_pred CcccccccccccC---C-CeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHh
Q psy10674 13 HFCCYECDKKVQF---E-NYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYAT 76 (138)
Q Consensus 13 ~~~C~~C~~~i~~---~-~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~ 76 (138)
..+|..|+++|.+ . +.+.. ++..||++||+|..|+++|.+..|+.+++++||+.||.+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a------~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY------EGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE------TTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHH
T ss_pred CccCcccCCcccCCCCCceeEEE------CcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhcc
Confidence 3679999999995 2 44443 466999999999999999988889999999999999975
No 74
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=1.6e-14 Score=86.14 Aligned_cols=51 Identities=24% Similarity=0.430 Sum_probs=44.9
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|++|+++|. ++++.++++.||++||+|..|+++|.+..| +.+ |+|||.
T Consensus 15 ~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~-g~~yC~ 65 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADAR-ELK-GELYCL 65 (79)
T ss_dssp CCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EET-TEEECH
T ss_pred CCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCCE-eEC-CEEeCH
Confidence 579999999998 456679999999999999999999997755 777 999994
No 75
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=2.4e-14 Score=87.22 Aligned_cols=52 Identities=25% Similarity=0.450 Sum_probs=47.4
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|.+|+++|.+ .++.++++.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 25 ~~~C~~C~~~I~~-~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~ 76 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVVKARDKYRHPECFVCADCNLNLKQKGYFFVE-GELYCE 76 (89)
T ss_dssp CCBCTTTCCBCCS-CCEESSSCEECTTTCCCSSSCCCTTTSCCEEET-TEEECH
T ss_pred CCCcccCCCEecc-cEEEECCceECccCCEecCCCCCCCCCCeEeEC-CEEECH
Confidence 4799999999986 567799999999999999999999988899998 999994
No 76
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=3.4e-14 Score=83.51 Aligned_cols=59 Identities=15% Similarity=0.362 Sum_probs=50.5
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCcccc-CCceeeeCCeeecHHHHHhhc
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLV-DLMYFHYKGNVYCLRDYATML 78 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~~~~yC~~c~~~~~ 78 (138)
..+|..|+++|.+ +++.. ++..||++||+|..|+++|. +..|+..++++||..||.+++
T Consensus 5 ~~~C~~C~~~I~~-~~v~a------~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 5 SSGCDSCEKYITG-RVLEA------GEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAAR 64 (73)
T ss_dssp CCSCSSSCCCCSS-CCBCC------SSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTS
T ss_pred cCCcccCCCEecC-eeEEe------CCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhh
Confidence 3579999999984 55433 57799999999999999997 678899999999999998876
No 77
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.46 E-value=3.8e-14 Score=91.34 Aligned_cols=61 Identities=23% Similarity=0.539 Sum_probs=51.6
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCcccc--CCceeeeCCeeecHHHHHhhcC
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYATMLD 79 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~~~~yC~~c~~~~~~ 79 (138)
..+|..|+++|.+...+.. +++.||++||+|..|+++|. +..|+.+++++||+.||.++||
T Consensus 61 ~~~C~~C~~~I~~~~~v~a------~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA------MDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE------TTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEe------CCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 3589999999995544544 46699999999999999996 4679999999999999999874
No 78
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.46 E-value=6.8e-14 Score=80.37 Aligned_cols=58 Identities=26% Similarity=0.706 Sum_probs=49.6
Q ss_pred cccccccccccCC-CeEEEeccccCCCCCCc--ccCcccccCCccccCCceeeeCCeeec-HHHHHhh
Q psy10674 14 FCCYECDKKVQFE-NYTGKITQSQESEVLWH--PQCFVCSTCDELLVDLMYFHYKGNVYC-LRDYATM 77 (138)
Q Consensus 14 ~~C~~C~~~i~~~-~~~~~~~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~yC-~~c~~~~ 77 (138)
.+|..|+++|.++ +.+.. ++..|| ++||+|..|+++|.+..|+.+++++|| .+||.++
T Consensus 3 ~~C~~C~~~I~~~~~~v~a------~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY------NNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp EECTTTSSEECTTSCEEEE------TTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred CCCcCCCCeeccCceEEEE------CCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 4799999999974 45444 466999 999999999999988889999999999 8998764
No 79
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.45 E-value=4.4e-14 Score=87.86 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=48.6
Q ss_pred CCcccccCccccc-CcEEEeCCCccccCCccccccccccCCCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFV-NEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~-~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
+++|++|+++|.. +.++.++|+.||++||+|..|+++|.+..|++.+ |+|||.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~-g~~yC~ 58 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKD-NKILCN 58 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEET-TEEECH
T ss_pred CCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcC-CEEECh
Confidence 4799999999974 6778899999999999999999999998999998 999995
No 80
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.44 E-value=2.6e-14 Score=85.86 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=52.6
Q ss_pred CCcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCcee--eeCCeeecHHHHHhhcC
Q psy10674 12 KHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYF--HYKGNVYCLRDYATMLD 79 (138)
Q Consensus 12 ~~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~~~~yC~~c~~~~~~ 79 (138)
...+|..|+++|.+.+.+.. +++.||++||+|..|+++|....|+ ++++++||+.||.+++.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a------~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV------NGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB------TTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCC
T ss_pred CCCCCcccCCCcccceEEEE------CCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhc
Confidence 34689999999987776643 4669999999999999999888777 47999999999988874
No 81
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.44 E-value=2.6e-14 Score=92.06 Aligned_cols=58 Identities=21% Similarity=0.469 Sum_probs=49.1
Q ss_pred HhhcCCC--cccccCcccccC-cEEEeCCCccccCCcccccccccc-CCCCeeecCCCCCccCC
Q psy10674 75 ATMLDIP--RCHACDELIFVN-EYTLAENKTFHVKHFCCYECDKEL-CNQSYIPVTESRPGQDS 134 (138)
Q Consensus 75 ~~~~~~~--~C~~C~~~I~~~-~~~~~~~~~~H~~CF~C~~C~~~l-~~~~f~~~~~~~~y~~~ 134 (138)
.++++ + +|+.|+++|.+. .++.|+++.||++||+|..|+++| .+..|++.+ |+|||..
T Consensus 2 ~r~fg-~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~-g~~yC~~ 63 (123)
T 2l3k_A 2 LRLFG-QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLIN-SDIVCEQ 63 (123)
T ss_dssp CSSSS-SSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECS-SSEEEGG
T ss_pred hhhhC-CCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeC-CEEEcHH
Confidence 45564 5 999999999864 355699999999999999999999 477899998 9999954
No 82
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=2.5e-14 Score=92.06 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=48.2
Q ss_pred CCcccccCcccccCcEEEeCCCccccCCccccccccccC--CCCeeecCCCCCccC
Q psy10674 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC--NQSYIPVTESRPGQD 133 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~--~~~f~~~~~~~~y~~ 133 (138)
+++|++|+++|.++.++.|+++.||++||+|..|+++|. +..|+..+ |+|||.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~-g~~yC~ 59 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKS-GMILCR 59 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEET-TEEECH
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEEC-CeeecH
Confidence 579999999999887677999999999999999999997 57899998 999994
No 83
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=1.6e-13 Score=82.10 Aligned_cols=64 Identities=19% Similarity=0.470 Sum_probs=52.3
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCcccc-CCcee-eeCCeeecHHHHHhhcCCCccc
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLV-DLMYF-HYKGNVYCLRDYATMLDIPRCH 84 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~-~~~~~~yC~~c~~~~~~~~~C~ 84 (138)
..+|..|+++|. ++.+.. ++..||++||+|..|+++|. +..|. ++++++||+.||.++++ +.+.
T Consensus 15 ~~~C~~C~~~I~-~~~~~a------~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~-~~~s 80 (81)
T 1x6a_A 15 GEFCHGCSLLMT-GPFMVA------GEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS-GPSS 80 (81)
T ss_dssp SCBCTTTCCBCC-SCCBCC------TTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC-TTSC
T ss_pred CCcCccCCCCcC-ceEEEE------CCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc-CCCC
Confidence 357999999999 555433 56799999999999999995 45676 58999999999999995 5654
No 84
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.23 E-value=5.5e-12 Score=75.28 Aligned_cols=59 Identities=19% Similarity=0.420 Sum_probs=47.1
Q ss_pred cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceee-eCCeeecHHHHHhhcC
Q psy10674 14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLD 79 (138)
Q Consensus 14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~-~~~~~yC~~c~~~~~~ 79 (138)
.+|..|+++|. ++.+.. ++..||++||+|..|+++|....++. .++.+||..||.++++
T Consensus 16 ~~C~~C~~~I~-~~~v~a------~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVSA------LGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CBCTTTCCBCC-SCCEEE------TTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CcCccccCEec-cceEEE------CCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 58999999999 555544 46699999999999999997655555 4556799999987764
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.20 E-value=3.5e-07 Score=44.36 Aligned_cols=28 Identities=25% Similarity=0.632 Sum_probs=25.8
Q ss_pred CcccccCcccccCcEEEeCCCccccCCc
Q psy10674 81 PRCHACDELIFVNEYTLAENKTFHVKHF 108 (138)
Q Consensus 81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF 108 (138)
++|+.|++.+...+.+.+.|+.||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 6999999999988877799999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=97.02 E-value=0.00011 Score=35.33 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=22.4
Q ss_pred cccccccccccCCCeEEEeccccCCCCCCcccCc
Q psy10674 14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCF 47 (138)
Q Consensus 14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf 47 (138)
.+|..|++.+.+.+.+.. .+..||..||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~------~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC------LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS------SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE------CCeEecccCC
Confidence 579999999987766554 4669999997
No 87
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=88.62 E-value=1.1 Score=25.11 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=37.4
Q ss_pred cCcccccCCccccCCceeeeCCeeecHHHHHhhcC--CCcccccCcccccCcEE
Q psy10674 45 QCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD--IPRCHACDELIFVNEYT 96 (138)
Q Consensus 45 ~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~--~~~C~~C~~~I~~~~~~ 96 (138)
+-|.|..|...+.+ .....-|..||..|..+.+. ...|+.|+.++....++
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~ 59 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT 59 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc
Confidence 34788999888754 34557889999999876652 35799999998655443
No 88
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=88.18 E-value=0.56 Score=28.42 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=35.4
Q ss_pred ccccCCccccCCceeeeCCeeecHHHHHhh--cCCCcccccCcccccCcEEEeCCCcc
Q psy10674 48 VCSTCDELLVDLMYFHYKGNVYCLRDYATM--LDIPRCHACDELIFVNEYTLAENKTF 103 (138)
Q Consensus 48 ~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~--~~~~~C~~C~~~I~~~~~~~~~~~~~ 103 (138)
-|..|+.|+..-.-...=.-++|.+|+... .+...|..|..+|..-+.. .+|..|
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~-~~~~if 59 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQC-TRGSLF 59 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE-EGGGCC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEe-ccCCEE
Confidence 377788887432222334458999999652 2246899999999754443 456654
No 89
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.78 E-value=0.72 Score=25.47 Aligned_cols=47 Identities=19% Similarity=0.436 Sum_probs=33.2
Q ss_pred CcccccCCccccCCceeeeCCeeecHHHHHhhcC----CCcccccCcccccC
Q psy10674 46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD----IPRCHACDELIFVN 93 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~----~~~C~~C~~~I~~~ 93 (138)
-+.|.+|...+.. .....=|..||..|..+.+. ...|+.|..+|...
T Consensus 20 ~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CCEeccCCcccCC-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 3678888887754 33346677899999887652 23799998888543
No 90
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.16 E-value=0.5 Score=25.74 Aligned_cols=48 Identities=27% Similarity=0.578 Sum_probs=33.2
Q ss_pred CcccccCCccccCCceeeeCCeeecHHHHHhhc--CCCcccccCcccccCc
Q psy10674 46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFVNE 94 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~--~~~~C~~C~~~I~~~~ 94 (138)
=+.|..|...+... ....=|..||..|..+.+ +...|+.|..+|...+
T Consensus 15 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CEECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CCCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 36788887777542 334567789999987665 2357999999886543
No 91
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.76 E-value=0.57 Score=28.68 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=42.4
Q ss_pred cccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccccC
Q psy10674 14 FCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVN 93 (138)
Q Consensus 14 ~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~ 93 (138)
..|..|+..-...+++.-.. =++.||+.|..=.. .+ ...+..+|..| ..|..|++.-.+.
T Consensus 8 ~~C~~C~~~g~~~~ll~C~~----C~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C-------~~C~~C~~~~~~~ 67 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFCTT----CGQHYHGMCLDIAV--TP-------LKRAGWQCPEC-------KVCQNCKQSGEDS 67 (111)
T ss_dssp SCBTTTCCCCCTTTSEECSS----SCCEECTTTTTCCC--CT-------TTSTTCCCTTT-------CCCTTTCCCSCCT
T ss_pred CCCcCCCCCCCCcCCeECCC----CCCCcChHHhCCcc--cc-------ccccCccCCcC-------CcccccCccCCCC
Confidence 45777766432223333321 24578888764211 11 12345667665 2688888876555
Q ss_pred cEEE--eCCCccccCCcc
Q psy10674 94 EYTL--AENKTFHVKHFC 109 (138)
Q Consensus 94 ~~~~--~~~~~~H~~CF~ 109 (138)
.++. .=++.||..|..
T Consensus 68 ~ll~Cd~C~~~yH~~Cl~ 85 (111)
T 2ysm_A 68 KMLVCDTCDKGYHTFCLQ 85 (111)
T ss_dssp TEEECSSSCCEEEGGGSS
T ss_pred CeeECCCCCcHHhHHhcC
Confidence 5555 346778888765
No 92
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=82.94 E-value=1.4 Score=26.09 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=18.6
Q ss_pred CeeecHHHHH--hhcCCCcccccCcccc
Q psy10674 66 GNVYCLRDYA--TMLDIPRCHACDELIF 91 (138)
Q Consensus 66 ~~~yC~~c~~--~~~~~~~C~~C~~~I~ 91 (138)
+.++|+.||. +.-|...|++|+.+-.
T Consensus 42 ~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 42 GFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CChhhHHHHHHHHhccCccccccCCccc
Confidence 4567999884 3445678999987663
No 93
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=82.80 E-value=1.9 Score=23.18 Aligned_cols=50 Identities=12% Similarity=0.313 Sum_probs=32.1
Q ss_pred cccccCCc-cccCCc---eeeeCCeeecHHHHHhhc--CCCcccccCcccccCcEE
Q psy10674 47 FVCSTCDE-LLVDLM---YFHYKGNVYCLRDYATML--DIPRCHACDELIFVNEYT 96 (138)
Q Consensus 47 f~C~~C~~-~l~~~~---~~~~~~~~yC~~c~~~~~--~~~~C~~C~~~I~~~~~~ 96 (138)
+.|.+|.. .+.+.. ....=|-.+|..|..+.+ +...|+.|++++....+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 59 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR 59 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence 46777776 443321 223456778988886652 235799999999766554
No 94
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.11 E-value=1.6 Score=24.12 Aligned_cols=50 Identities=18% Similarity=0.403 Sum_probs=33.4
Q ss_pred CcccccCCccccCCceeeeCCeeecHHHHHhhcC-CCcccccCcccccCcE
Q psy10674 46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD-IPRCHACDELIFVNEY 95 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~-~~~C~~C~~~I~~~~~ 95 (138)
-+.|.+|...+........=+..||..|..+.+. ...|+.|..+|...+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 3678888777755322225677899988865431 2589999998865543
No 95
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=81.53 E-value=0.81 Score=24.57 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=12.8
Q ss_pred ccccccccCCCCeeecCCCCCccC
Q psy10674 110 CYECDKELCNQSYIPVTESRPGQD 133 (138)
Q Consensus 110 C~~C~~~l~~~~f~~~~~~~~y~~ 133 (138)
|..|...++...-++.+ ||.||+
T Consensus 10 C~~C~c~Vs~~eai~~d-GK~YCS 32 (55)
T 1jjd_A 10 CEPCLCNVDPSKAIDRN-GLYYCS 32 (55)
T ss_dssp STTCCCCBCTTTSEESS-SCEESS
T ss_pred CCCCeeEechHHhhhcC-CeEEeh
Confidence 45555555544445555 666664
No 96
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=80.29 E-value=4 Score=24.33 Aligned_cols=53 Identities=15% Similarity=0.049 Sum_probs=39.2
Q ss_pred cccCcccccCCccccCCceeeeCCeeecHHHHHhhc-CCCcccccCcccccCcEE
Q psy10674 43 HPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML-DIPRCHACDELIFVNEYT 96 (138)
Q Consensus 43 H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~-~~~~C~~C~~~I~~~~~~ 96 (138)
-++-|.|..|...+.+ +.....|..||..+-.+.+ +...|+.|+.++....++
T Consensus 26 ~p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE 79 (100)
T ss_dssp CSTTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE
T ss_pred CcHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhce
Confidence 3667999999888865 4555689999998876544 135899999988655443
No 97
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=78.72 E-value=3.5 Score=25.19 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=44.4
Q ss_pred ccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccccCc
Q psy10674 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNE 94 (138)
Q Consensus 15 ~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~ 94 (138)
.|..|+ ..++++.-..+ .-...||..|.. |.. ...|.-||..| .|..|++...
T Consensus 17 ~C~~C~---~~G~ll~CD~~--~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c--------~C~~C~k~~~--- 69 (107)
T 4gne_A 17 YCFQCG---DGGELVMCDKK--DCPKAYHLLCLN-------LTQ----PPYGKWECPWH--------QCDECSSAAV--- 69 (107)
T ss_dssp SCTTTC---CCSEEEECCST--TCCCEECTGGGT-------CSS----CCSSCCCCGGG--------BCTTTCSBCC---
T ss_pred CCCcCC---CCCcEeEECCC--CCCcccccccCc-------CCc----CCCCCEECCCC--------CCCcCCCCCC---
Confidence 455555 23555554311 023478877754 322 22467788766 5778887652
Q ss_pred EEEeCCCccccCCcccccccc-----ccCCCCeeecCCCCCccCC
Q psy10674 95 YTLAENKTFHVKHFCCYECDK-----ELCNQSYIPVTESRPGQDS 134 (138)
Q Consensus 95 ~~~~~~~~~H~~CF~C~~C~~-----~l~~~~f~~~~~~~~y~~~ 134 (138)
|.|..|.+ -+.+.-+....+|++.|+.
T Consensus 70 -------------~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c~~~ 101 (107)
T 4gne_A 70 -------------SFCEFCPHSFCKDHEKGALVPSALEGRLCCSE 101 (107)
T ss_dssp -------------EECSSSSCEECTTTCTTSCEECTTTTCEECTT
T ss_pred -------------cCcCCCCcchhhhccCCcceecCCCCceecCC
Confidence 33444443 3445556666668887765
No 98
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=78.57 E-value=2.6 Score=25.86 Aligned_cols=72 Identities=21% Similarity=0.464 Sum_probs=34.1
Q ss_pred ccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCC------ceeeeCCeeecHHHHHhhc-CCCcccccC
Q psy10674 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDL------MYFHYKGNVYCLRDYATML-DIPRCHACD 87 (138)
Q Consensus 15 ~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~------~~~~~~~~~yC~~c~~~~~-~~~~C~~C~ 87 (138)
.|..|++++........ ..-.+=..|.+|...+... .....=|..||..|..+.+ ....|+.|.
T Consensus 50 ~CP~Cr~~~~~~~l~~l---------~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr 120 (133)
T 4ap4_A 50 TCPTCRKKINHKRYHPI---------YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120 (133)
T ss_dssp BCTTTCCBCTTTCEEEC---------BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTC
T ss_pred CCCCCCCcCcccccccc---------ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCC
Confidence 56666666654433221 1122234566665554221 0122345566666654321 024677777
Q ss_pred cccccCcE
Q psy10674 88 ELIFVNEY 95 (138)
Q Consensus 88 ~~I~~~~~ 95 (138)
..|..+++
T Consensus 121 ~~~~~~~~ 128 (133)
T 4ap4_A 121 KKINHKRY 128 (133)
T ss_dssp CBCCGGGE
T ss_pred CcCChhcc
Confidence 66655443
No 99
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=76.61 E-value=1.4 Score=30.00 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=25.0
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHh
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYAT 76 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~ 76 (138)
.+|..|+.......-...+|+.+|..|+.+
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 469999998876666678999999999865
No 100
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=76.28 E-value=1.5 Score=26.12 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=33.4
Q ss_pred cccccCCccccCCcee-eeCCeeecHHHHHhhcCC--CcccccCcccccCcEE
Q psy10674 47 FVCSTCDELLVDLMYF-HYKGNVYCLRDYATMLDI--PRCHACDELIFVNEYT 96 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~-~~~~~~yC~~c~~~~~~~--~~C~~C~~~I~~~~~~ 96 (138)
+.|.+|...+.. ... ..=|-.||..|..+.+.. ..|+.|..++....++
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 23 FRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELV 74 (100)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCE
T ss_pred CCCccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhH
Confidence 678888877754 233 445778999888654311 4799999988765554
No 101
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=74.86 E-value=5.5 Score=23.63 Aligned_cols=52 Identities=10% Similarity=-0.095 Sum_probs=38.0
Q ss_pred ccCcccccCCccccCCceeeeCC-eeecHHHHHhhcC-CCcccccCcccccCcEE
Q psy10674 44 PQCFVCSTCDELLVDLMYFHYKG-NVYCLRDYATMLD-IPRCHACDELIFVNEYT 96 (138)
Q Consensus 44 ~~Cf~C~~C~~~l~~~~~~~~~~-~~yC~~c~~~~~~-~~~C~~C~~~I~~~~~~ 96 (138)
++-|.|..|...+.+ ......| ..||+.|..+.+. ...|+.|++++....++
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIR 73 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSE
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhce
Confidence 566999999888865 4555677 9999988765541 25899999988655444
No 102
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=74.47 E-value=1.2 Score=25.89 Aligned_cols=11 Identities=18% Similarity=0.685 Sum_probs=6.2
Q ss_pred ccccccccccc
Q psy10674 14 FCCYECDKKVQ 24 (138)
Q Consensus 14 ~~C~~C~~~i~ 24 (138)
..|..|+.+|.
T Consensus 3 ~~CP~C~~~l~ 13 (81)
T 2jrp_A 3 ITCPVCHHALE 13 (81)
T ss_dssp CCCSSSCSCCE
T ss_pred CCCCCCCCccc
Confidence 34566666554
No 103
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=74.03 E-value=2.1 Score=21.96 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=10.7
Q ss_pred CeeecHHHHHhhcC-CCcccccCccc
Q psy10674 66 GNVYCLRDYATMLD-IPRCHACDELI 90 (138)
Q Consensus 66 ~~~yC~~c~~~~~~-~~~C~~C~~~I 90 (138)
+-.||..|..+.+. ...|+.|..+|
T Consensus 28 gH~fc~~Ci~~~~~~~~~CP~Cr~~~ 53 (55)
T 2ecm_A 28 GHLLHRTCYEEMLKEGYRCPLCSGPS 53 (55)
T ss_dssp SCEEETTHHHHHHHHTCCCTTSCCSS
T ss_pred CCcccHHHHHHHHHcCCcCCCCCCcC
Confidence 34455555433210 13455555544
No 104
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.44 E-value=1.2 Score=25.42 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=11.6
Q ss_pred CcccccCcccccCcEEEeCCCccccCCc
Q psy10674 81 PRCHACDELIFVNEYTLAENKTFHVKHF 108 (138)
Q Consensus 81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF 108 (138)
..|+.|...|..+..-..=+..||..|+
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHH
Confidence 3455555554433211122344555554
No 105
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=72.90 E-value=2.8 Score=22.10 Aligned_cols=50 Identities=20% Similarity=0.466 Sum_probs=30.6
Q ss_pred cccccCCccccCC------ceeeeCCeeecHHHHHhhc-CCCcccccCcccccCcEE
Q psy10674 47 FVCSTCDELLVDL------MYFHYKGNVYCLRDYATML-DIPRCHACDELIFVNEYT 96 (138)
Q Consensus 47 f~C~~C~~~l~~~------~~~~~~~~~yC~~c~~~~~-~~~~C~~C~~~I~~~~~~ 96 (138)
+.|.+|...+... .....=|-.+|..|..+.+ ....|+.|..++...++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEE
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcccee
Confidence 4566676655321 1233456778888876543 125899999988766554
No 106
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=72.87 E-value=4.2 Score=23.36 Aligned_cols=52 Identities=17% Similarity=0.083 Sum_probs=37.5
Q ss_pred ccCcccccCCccccCCceeeeCCeeecHHHHHhhc-CCCcccccCcccccCcEE
Q psy10674 44 PQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML-DIPRCHACDELIFVNEYT 96 (138)
Q Consensus 44 ~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~-~~~~C~~C~~~I~~~~~~ 96 (138)
++-|.|..|...+.+ ......|..||..+-.+.+ +...|+.|+.++....++
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~ 64 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLE 64 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcc
Confidence 556999999888865 4555689999998865432 125899999988655443
No 107
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=72.83 E-value=3.6 Score=24.09 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=32.7
Q ss_pred CcccccCCccccCCceee-eCCeeecHHHHHhhcC-CCcccccCcccccCc
Q psy10674 46 CFVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLD-IPRCHACDELIFVNE 94 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~-~~~~~yC~~c~~~~~~-~~~C~~C~~~I~~~~ 94 (138)
-+.|.+|...+.. .... .=|..||..|..+.+. ...|+.|..++...+
T Consensus 22 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 22 LLRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 3678888877754 2333 5677899998866542 247999998886543
No 108
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=72.62 E-value=1.1 Score=27.36 Aligned_cols=30 Identities=20% Similarity=0.475 Sum_probs=20.1
Q ss_pred CCcccccCcccccCcEEE---e-----CC---CccccCCcc
Q psy10674 80 IPRCHACDELIFVNEYTL---A-----EN---KTFHVKHFC 109 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~---~-----~~---~~~H~~CF~ 109 (138)
...|..|++.|..+++-. + .| ..||..||.
T Consensus 25 Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 25 RASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp CCBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred CCcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 458999999998766321 1 11 357888876
No 109
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=71.71 E-value=0.84 Score=27.45 Aligned_cols=60 Identities=15% Similarity=0.324 Sum_probs=35.5
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCcccccCcEEEeCCCccccCCccccccccccC
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC 118 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~ 118 (138)
..|..|+.+|.. .++..+|..|.........|+.|++++ +++.|=|.. =|.|..|+..++
T Consensus 33 ~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~~~a~CPdC~q~L---evLkACGAv----dYFC~~chgLiS 92 (101)
T 2jne_A 33 LHCPQCQHVLDQ-----DNGHARCRSCGEFIEMKALCPDCHQPL---QVLKACGAV----DYFCQHGHGLIS 92 (101)
T ss_dssp CBCSSSCSBEEE-----ETTEEEETTTCCEEEEEEECTTTCSBC---EEEEETTEE----EEEETTTTEEEC
T ss_pred ccCccCCCccee-----cCCEEECccccchhhccccCcchhhHH---HHHHHhcCc----chhhccCCceee
Confidence 567778777632 344555766654322235888888888 345455422 145777776665
No 110
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=71.03 E-value=4.4 Score=22.64 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=32.8
Q ss_pred CcccccCCccccCCceeeeCCeeecHHHHHhhc-------CCCcccccCcccccCcEE
Q psy10674 46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATML-------DIPRCHACDELIFVNEYT 96 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~-------~~~~C~~C~~~I~~~~~~ 96 (138)
=+.|.+|...+... ....=+..||..|..+.+ +...|+.|..++...++.
T Consensus 19 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 19 EVTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK 75 (85)
T ss_dssp TTSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred CCCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence 36788887777543 334456778998886532 125788888888655433
No 111
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=70.32 E-value=1.5 Score=25.49 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=25.2
Q ss_pred CcccccCcccccCcEEEeCCCccccCCccccc
Q psy10674 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYE 112 (138)
Q Consensus 81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~ 112 (138)
-+|.-|.+.+.+..++.--...-|.-||-|++
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred eEeecchhhhccCceeeCCCccCCeeeccccH
Confidence 37888888888877887777778888888865
No 112
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=70.11 E-value=5.1 Score=26.00 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=34.3
Q ss_pred CcccccCCccccCCceeeeCCeeecHHHHHhhcC--CCcccccCcccccCc
Q psy10674 46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD--IPRCHACDELIFVNE 94 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~--~~~C~~C~~~I~~~~ 94 (138)
=|.|.+|...+.. .....-|-.||..|..+.+. ...|+.|..+|...+
T Consensus 18 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 18 KYECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp GGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCChhhcC-cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 3788888888754 34456788899999876541 148999998886643
No 113
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=69.36 E-value=5.4 Score=22.08 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=21.2
Q ss_pred cccccCCccccCCc--eeeeCCeeecHHHHHhhcC-CCcccccCccccc
Q psy10674 47 FVCSTCDELLVDLM--YFHYKGNVYCLRDYATMLD-IPRCHACDELIFV 92 (138)
Q Consensus 47 f~C~~C~~~l~~~~--~~~~~~~~yC~~c~~~~~~-~~~C~~C~~~I~~ 92 (138)
+.|.+|-..+.... ....=+..||..|..+.+. ...|+.|...|..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 55666655553321 1113344555555543321 1356666555543
No 114
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=69.16 E-value=1.6 Score=27.09 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=19.8
Q ss_pred CCcccccCcccccCcEEE---e-----C---CCccccCCcc
Q psy10674 80 IPRCHACDELIFVNEYTL---A-----E---NKTFHVKHFC 109 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~---~-----~---~~~~H~~CF~ 109 (138)
...|..|++.|..+++-. + . ...||..||.
T Consensus 20 RA~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~ 60 (114)
T 1v9x_A 20 RSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL 60 (114)
T ss_dssp CCBCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHH
T ss_pred CCCchhhCCccCCCCEEEEEEecCcccCCCcceeECccccc
Confidence 358999999998776432 1 1 2356778876
No 115
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.47 E-value=11 Score=20.36 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=32.1
Q ss_pred CcccccCCccccCCceeeeCCeeecHHHHHhhcC-CCcccccCcccccC
Q psy10674 46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD-IPRCHACDELIFVN 93 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~-~~~C~~C~~~I~~~ 93 (138)
-+.|.+|...+... ....=+..||..|..+.+. ...|+.|...|...
T Consensus 15 ~~~C~IC~~~~~~~-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 15 VPECAICLQTCVHP-VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp CCBCSSSSSBCSSE-EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCccCCcccCCC-EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 36788887777442 3445678899999876431 25799999888643
No 116
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=68.18 E-value=3 Score=25.39 Aligned_cols=45 Identities=16% Similarity=0.430 Sum_probs=28.3
Q ss_pred CcccccCCccccCCceee-eCCeeecHHHHHhhcCCCcccccCccccc
Q psy10674 46 CFVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLDIPRCHACDELIFV 92 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~-~~~~~yC~~c~~~~~~~~~C~~C~~~I~~ 92 (138)
-+.|.+|...+... ... .=|-.||..|..+.+. ..|+.|..++..
T Consensus 22 ~~~C~IC~~~~~~p-v~~~~CgH~fC~~Ci~~~~~-~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILREP-VCLGGCEHIFCSNCVSDCIG-TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSSC-BCCCSSSCCBCTTTGGGGTT-TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhCc-cEeCCCCCHHHHHHHHHHhc-CCCcCCCCcCcc
Confidence 36677776666432 233 4566777777766653 578888887753
No 117
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=67.95 E-value=4.6 Score=23.21 Aligned_cols=45 Identities=27% Similarity=0.524 Sum_probs=32.0
Q ss_pred cCcccccCCccccCCceeee-CCeeecHHHHHhhc---CCCcccccCccc
Q psy10674 45 QCFVCSTCDELLVDLMYFHY-KGNVYCLRDYATML---DIPRCHACDELI 90 (138)
Q Consensus 45 ~Cf~C~~C~~~l~~~~~~~~-~~~~yC~~c~~~~~---~~~~C~~C~~~I 90 (138)
+-+.|..|...+.. ..... =|..||..|..+.+ +...|+.|..++
T Consensus 12 ~~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34788899887754 34444 38889999986553 224899999987
No 118
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=67.15 E-value=4.5 Score=22.94 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=29.7
Q ss_pred cccccCCccccCC--ceee-eCCeeecHHHHHhhc--CCCcccccCcccccCc
Q psy10674 47 FVCSTCDELLVDL--MYFH-YKGNVYCLRDYATML--DIPRCHACDELIFVNE 94 (138)
Q Consensus 47 f~C~~C~~~l~~~--~~~~-~~~~~yC~~c~~~~~--~~~~C~~C~~~I~~~~ 94 (138)
+.|.+|-.++... .+.. .=|-.+|..|..+.. +...|+.|.+++....
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 5677776666321 1111 246678888887653 1248999998886544
No 119
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=67.11 E-value=2.9 Score=25.49 Aligned_cols=48 Identities=17% Similarity=0.352 Sum_probs=34.3
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhhcC--CCcccccCcccccCcE
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD--IPRCHACDELIFVNEY 95 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~--~~~C~~C~~~I~~~~~ 95 (138)
+.|.+|...+.. .....=|-.||..|..+.+. ...|+.|..+|....+
T Consensus 19 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 68 (118)
T 3hct_A 19 YECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68 (118)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred CCCCcCChhhcC-eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhc
Confidence 788888887754 34446678899999866431 1389999999876543
No 120
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.97 E-value=6.1 Score=22.10 Aligned_cols=44 Identities=20% Similarity=0.420 Sum_probs=30.9
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhhcC-CCcccccCcccc
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD-IPRCHACDELIF 91 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~-~~~C~~C~~~I~ 91 (138)
+.|.+|...+.. .....=|..||..|..+.+. ...|+.|..++.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 678888777744 34445677899988865431 257999999885
No 121
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=66.94 E-value=3 Score=22.47 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=25.3
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhhcC-CCcccccCcccc
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD-IPRCHACDELIF 91 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~-~~~C~~C~~~I~ 91 (138)
..|..|...+........=|-.||..|..+.+. ...|+.|..++.
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 456677666644323334456677777654320 246777777764
No 122
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=66.88 E-value=4.3 Score=24.52 Aligned_cols=48 Identities=19% Similarity=0.391 Sum_probs=34.8
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhhcC--CCcccccCcccccCcE
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD--IPRCHACDELIFVNEY 95 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~--~~~C~~C~~~I~~~~~ 95 (138)
+.|.+|...+.. .....=|-.||..|..+.+. ...|+.|..+|...++
T Consensus 24 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 24 ISCQICEHILAD-PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp TBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence 678889887754 34456788899999865431 2589999999876543
No 123
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.30 E-value=6.7 Score=21.15 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=30.1
Q ss_pred CcccccCCccccCCceeeeCCeeecHHHHHhhcC-CCcccccCcccccC
Q psy10674 46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD-IPRCHACDELIFVN 93 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~-~~~C~~C~~~I~~~ 93 (138)
-+.|.+|...+.. ....=+..+|..|..+.+. ...|+.|..+|...
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 3567777776654 3445567788888865431 25788888887643
No 124
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.52 E-value=4.4 Score=22.91 Aligned_cols=47 Identities=19% Similarity=0.409 Sum_probs=31.2
Q ss_pred cccccCCccccCC---ceeeeCCeeecHHHHHhhcC----CCcccccCcccccC
Q psy10674 47 FVCSTCDELLVDL---MYFHYKGNVYCLRDYATMLD----IPRCHACDELIFVN 93 (138)
Q Consensus 47 f~C~~C~~~l~~~---~~~~~~~~~yC~~c~~~~~~----~~~C~~C~~~I~~~ 93 (138)
+.|.+|...+... .....=|..||..|..+.+. ...|+.|..++...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 6788887777542 22334567889999876532 14799999887543
No 125
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=65.34 E-value=5.8 Score=27.57 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=38.3
Q ss_pred cccCcccccCCccccCCceeeeCCeeecHHHHHhhc--CCCcccccCcccccCcEE
Q psy10674 43 HPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFVNEYT 96 (138)
Q Consensus 43 H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~--~~~~C~~C~~~I~~~~~~ 96 (138)
-+.-|.|..|...+.+ +.....|..||..|..+.+ +...|+.|+.++....++
T Consensus 205 ~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~ 259 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI 259 (281)
T ss_dssp CCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE
T ss_pred CCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCc
Confidence 4567899999888865 4556689999998875443 123599999999755544
No 126
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=65.14 E-value=9.2 Score=23.34 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=31.9
Q ss_pred CcccccCCccccCCceeeeCCeeecHHHHHhhc--CCCcccccCccccc
Q psy10674 46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFV 92 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~--~~~~C~~C~~~I~~ 92 (138)
-+.|.+|...+.. .....=|..||..|..+.+ +...|+.|..+|..
T Consensus 52 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC-cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3678888877754 3334567789998886553 22489999998864
No 127
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=64.92 E-value=3.7 Score=22.71 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=30.2
Q ss_pred CcccccCCccccCCceeee-CCeeecHHHHHhhcC---CCcccccCccccc
Q psy10674 46 CFVCSTCDELLVDLMYFHY-KGNVYCLRDYATMLD---IPRCHACDELIFV 92 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~~-~~~~yC~~c~~~~~~---~~~C~~C~~~I~~ 92 (138)
=+.|.+|...+.. ..... =|..||..|..+.+. ...|+.|..++..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 15 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3678888777754 33344 378889888766541 1478888887543
No 128
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=63.75 E-value=10 Score=23.68 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=31.1
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhhcC-CCcccccCccccc
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD-IPRCHACDELIFV 92 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~-~~~C~~C~~~I~~ 92 (138)
+.|.+|...+.. .....=|..||..|..+.+. ...|+.|..+|..
T Consensus 54 ~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 568888777754 34445677899999765431 2579999988853
No 129
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.40 E-value=3.6 Score=24.53 Aligned_cols=48 Identities=19% Similarity=0.402 Sum_probs=29.8
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhhcCC----CcccccCcccccCcE
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDI----PRCHACDELIFVNEY 95 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~----~~C~~C~~~I~~~~~ 95 (138)
+.|.+|...+... ....=|..||..|..+.+.. ..|+.|..+|....+
T Consensus 22 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 22 LECPICLELIKEP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp TSCSSSCCCCSSC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCcccChhhcCe-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 5677776666432 22345667888887655421 279999988865443
No 130
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.31 E-value=14 Score=20.00 Aligned_cols=36 Identities=19% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCCcccCcccccCCcc-ccCCceee--eCCeeecHHHHHhh
Q psy10674 40 VLWHPQCFVCSTCDEL-LVDLMYFH--YKGNVYCLRDYATM 77 (138)
Q Consensus 40 ~~~H~~Cf~C~~C~~~-l~~~~~~~--~~~~~yC~~c~~~~ 77 (138)
..+|+ ..|..|++. |.+..|.= =.+--+|..||...
T Consensus 7 ~v~H~--~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 7 GVFHP--VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SCCSC--SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CceeC--CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 35676 777777763 65543332 23456888888763
No 131
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=63.27 E-value=3.7 Score=22.78 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=25.8
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhhcC--------CCcccccCcccccC
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD--------IPRCHACDELIFVN 93 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~--------~~~C~~C~~~I~~~ 93 (138)
+.|.+|...+... ....=|-.||..|..+.+. ...|+.|..++...
T Consensus 13 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 13 VTCPICLELLTEP-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CEETTTTEECSSC-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred CCCcCCCcccCCe-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 5667776665432 2233455677777654331 24677777777543
No 132
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=63.13 E-value=1.6 Score=26.85 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=19.9
Q ss_pred CCcccccCcccccCcEEE------e----CC---CccccCCcc
Q psy10674 80 IPRCHACDELIFVNEYTL------A----EN---KTFHVKHFC 109 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~------~----~~---~~~H~~CF~ 109 (138)
...|.+|++.|..+++-. . .| ..||..||.
T Consensus 19 Ra~Ck~C~~kI~Kg~lRig~~~~~~~~~~~G~~~~W~H~~Cf~ 61 (111)
T 3odc_A 19 RSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 61 (111)
T ss_dssp CCBCTTTCCBCCTTCEEEEEEEEETTEEEEEEEEEEECHHHHH
T ss_pred CccccccCCCccCCceEEeEEecCccccCCCCcceeEChhhcc
Confidence 358999999998765321 1 12 357888887
No 133
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=62.70 E-value=4.9 Score=25.99 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=33.2
Q ss_pred CcccccCCccccCCceee-eCCeeecHHHHHhhcC--CCcccccCccccc
Q psy10674 46 CFVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLD--IPRCHACDELIFV 92 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~-~~~~~yC~~c~~~~~~--~~~C~~C~~~I~~ 92 (138)
-+.|.+|...+.. .... .=|..||..|..+.+. ...|+.|..+|..
T Consensus 54 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN-TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4688999888765 3333 5678899999876542 2579999999853
No 134
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=62.55 E-value=1.6 Score=27.15 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=20.1
Q ss_pred CCcccccCcccccCcEEE--------eCC---CccccCCcc
Q psy10674 80 IPRCHACDELIFVNEYTL--------AEN---KTFHVKHFC 109 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~--------~~~---~~~H~~CF~ 109 (138)
...|..|++.|..+++-. ..| ..||..||.
T Consensus 38 RA~Ck~C~~kI~KgeLRiG~~v~~~~~~G~~~~WyH~~Cf~ 78 (116)
T 3od8_A 38 RASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 78 (116)
T ss_dssp CCBCTTTCCBCCTTSEEEEEEEECSSSSSEEEEEEEHHHHH
T ss_pred CccCcccCCccCCCCEEEEEEeccCCcCCCCCeeECCccCh
Confidence 458999999998765322 112 347888887
No 135
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=62.03 E-value=9.2 Score=22.69 Aligned_cols=46 Identities=17% Similarity=0.375 Sum_probs=32.4
Q ss_pred CcccccCCccccCCceee-eCCeeecHHHHHhhcC-CCcccccCccccc
Q psy10674 46 CFVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLD-IPRCHACDELIFV 92 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~-~~~~~yC~~c~~~~~~-~~~C~~C~~~I~~ 92 (138)
-+.|.+|...+.. .... .=|..||..|..+.+. ...|+.|...+..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3678888877754 3343 6678899999866542 2589999988864
No 136
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=60.93 E-value=2.2 Score=26.47 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=11.8
Q ss_pred CCcccccCcccccCc
Q psy10674 80 IPRCHACDELIFVNE 94 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~ 94 (138)
...|..|++.|..++
T Consensus 15 RA~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 15 TAGCKKCKEKIVKGV 29 (117)
T ss_dssp CEECTTSSCEECTTC
T ss_pred CccchhhCcccCCCC
Confidence 358889999998765
No 137
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.82 E-value=6.2 Score=23.04 Aligned_cols=51 Identities=18% Similarity=0.311 Sum_probs=34.6
Q ss_pred cCcccccCCccccCCceee-eCCeeecHHHHHhhcC-------CCcccc--cCcc-cccCcEE
Q psy10674 45 QCFVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLD-------IPRCHA--CDEL-IFVNEYT 96 (138)
Q Consensus 45 ~Cf~C~~C~~~l~~~~~~~-~~~~~yC~~c~~~~~~-------~~~C~~--C~~~-I~~~~~~ 96 (138)
.=|.|..|...+.+ +... ..|..||+.|..+.+. ...|+. |.+. +...+++
T Consensus 6 ~~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~ 67 (94)
T 2yu4_A 6 SGFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67 (94)
T ss_dssp SCCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEE
T ss_pred cEeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCc
Confidence 34889999888865 4555 5899999988755431 248998 8765 5444444
No 138
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.71 E-value=2.8 Score=26.68 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=19.9
Q ss_pred CCcccccCcccccCcEEE----eC------C---CccccCCcc
Q psy10674 80 IPRCHACDELIFVNEYTL----AE------N---KTFHVKHFC 109 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~----~~------~---~~~H~~CF~ 109 (138)
...|..|+..|..+++-. .. | ..||..||.
T Consensus 27 RA~CK~C~~kI~KgeLRIG~~v~~~~~~~~G~~~~W~H~~Cf~ 69 (134)
T 2cs2_A 27 RSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFV 69 (134)
T ss_dssp CCBCSSSCCBCCTTSEEEEEEEECSSCTTTCEEEEEECHHHHH
T ss_pred CccchhcCCcccCCCeEEEEEecccccCCCCCcceeECcCcCh
Confidence 358999999998765321 11 2 257888886
No 139
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.14 E-value=4.6 Score=23.04 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=18.7
Q ss_pred cccccCcccccCcEEE--eCCCccccCCcc
Q psy10674 82 RCHACDELIFVNEYTL--AENKTFHVKHFC 109 (138)
Q Consensus 82 ~C~~C~~~I~~~~~~~--~~~~~~H~~CF~ 109 (138)
.|..|++.-.+++++. .=++.||..|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLN 57 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSS
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccC
Confidence 5777887655566665 345778887764
No 140
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.07 E-value=3.8 Score=22.89 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=30.3
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhhc-------CCCcccccCcccccCc
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATML-------DIPRCHACDELIFVNE 94 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~-------~~~~C~~C~~~I~~~~ 94 (138)
+.|.+|...+... ....=+..||..|..+.+ +...|+.|...+...+
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 20 VTCPICLELLTQP-LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCTTTCSCCSSC-BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCCCCcccCCc-eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 6788887776442 233456678888876532 1257888888886543
No 141
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.98 E-value=5 Score=22.09 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=18.0
Q ss_pred cccccCCccccCCc--eeeeCCeeecHHHHHhhc-CCCcccccCccc
Q psy10674 47 FVCSTCDELLVDLM--YFHYKGNVYCLRDYATML-DIPRCHACDELI 90 (138)
Q Consensus 47 f~C~~C~~~l~~~~--~~~~~~~~yC~~c~~~~~-~~~~C~~C~~~I 90 (138)
..|.+|-..+.... ....=+..||..|..+.+ ....|+.|...|
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADS 70 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcC
Confidence 44555555442221 111234445555543321 013455555554
No 142
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=57.51 E-value=3.5 Score=28.79 Aligned_cols=40 Identities=15% Similarity=0.409 Sum_probs=28.2
Q ss_pred CCcccccCcccccCcEEEe-CCCccccCCc----------cccccccccCCC
Q psy10674 80 IPRCHACDELIFVNEYTLA-ENKTFHVKHF----------CCYECDKELCNQ 120 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~~~~~-~~~~~H~~CF----------~C~~C~~~l~~~ 120 (138)
.+.|..|...|..+ ..=. -+..||..|+ +|..|+......
T Consensus 180 i~~C~iC~~iv~~g-~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC-EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC-cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 46899999988765 2212 3677999887 688888776643
No 143
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=57.01 E-value=4.9 Score=21.71 Aligned_cols=48 Identities=19% Similarity=0.404 Sum_probs=29.2
Q ss_pred cccccCCccccCC----c--eeeeCCeeecHHHHHhhc-CCCcccccCcccccCc
Q psy10674 47 FVCSTCDELLVDL----M--YFHYKGNVYCLRDYATML-DIPRCHACDELIFVNE 94 (138)
Q Consensus 47 f~C~~C~~~l~~~----~--~~~~~~~~yC~~c~~~~~-~~~~C~~C~~~I~~~~ 94 (138)
+.|.+|...+... . ....=|-.||..|..+.+ ....|+.|..++...+
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 5677776665321 0 233446678888875532 1258889988886544
No 144
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=56.74 E-value=8.8 Score=23.03 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=30.3
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhhcC--CCcccccCcccc
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD--IPRCHACDELIF 91 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~--~~~C~~C~~~I~ 91 (138)
+.|.+|...+.. .....=|-.||..|..+.+. ...|+.|...|.
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 678888777644 23345567789998866541 247999998875
No 145
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=56.11 E-value=12 Score=23.96 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=31.0
Q ss_pred CcccccCCccccCCceeeeCCeeecHHHHHhhcC--CCcccccCcccccC
Q psy10674 46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD--IPRCHACDELIFVN 93 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~--~~~C~~C~~~I~~~ 93 (138)
-+.|.+|...+.. .....=|-.||..|..+.+. ...|+.|..+|...
T Consensus 78 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ-PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC-CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3678888777744 33345667788888765541 13688888888644
No 146
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=55.99 E-value=14 Score=24.61 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=38.3
Q ss_pred ccCcccccCCccccCCceeeeCCeeecHHHHHhhc---CCCcccccCcccccCcEE
Q psy10674 44 PQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATML---DIPRCHACDELIFVNEYT 96 (138)
Q Consensus 44 ~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~---~~~~C~~C~~~I~~~~~~ 96 (138)
+.-|.|..|...+.+ +.....|..||..+-.+.+ + ..|+.|+.++....++
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~-~tcP~t~~~l~~~~L~ 157 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVG-HFDPVTRSPLTQDQLI 157 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTC-SBCTTTCCBCCGGGCE
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCC-CCCCCCcCCCChhhCc
Confidence 667999999988865 4566789999998865433 3 3699999998655544
No 147
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.97 E-value=14 Score=19.28 Aligned_cols=32 Identities=19% Similarity=0.394 Sum_probs=21.7
Q ss_pred CcccccCCccccCCceeeeCCeeecHHHHHhhc
Q psy10674 46 CFVCSTCDELLVDLMYFHYKGNVYCLRDYATML 78 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~ 78 (138)
-+.|.+|...+.. .....=|-.||..|..+.+
T Consensus 20 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCBCTTTCSBCSS-CEECTTSSEECHHHHHHHH
T ss_pred CCCCCcCCchhCC-eEEeCCCCcchHHHHHHHH
Confidence 3678888777754 3334567788988886654
No 148
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.93 E-value=5.7 Score=22.47 Aligned_cols=15 Identities=27% Similarity=0.955 Sum_probs=8.4
Q ss_pred CcccCcccccCCccc
Q psy10674 42 WHPQCFVCSTCDELL 56 (138)
Q Consensus 42 ~H~~Cf~C~~C~~~l 56 (138)
|..+=-.|.+|...+
T Consensus 11 ~~~~~~~C~IC~~~~ 25 (81)
T 2ecl_A 11 WDVECDTCAICRVQV 25 (81)
T ss_dssp CSCCCSCBTTTTBCT
T ss_pred ecCCCCCCcccChhh
Confidence 344445566666655
No 149
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.95 E-value=12 Score=20.64 Aligned_cols=42 Identities=19% Similarity=0.465 Sum_probs=27.6
Q ss_pred cccccCCccccCCceeeeCCee-ecHHHHHhhcCCCcccccCccccc
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNV-YCLRDYATMLDIPRCHACDELIFV 92 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~-yC~~c~~~~~~~~~C~~C~~~I~~ 92 (138)
+.|.+|...+... .+..=|-. +|..|..+. ..|+.|..+|..
T Consensus 26 ~~C~IC~~~~~~~-~~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAI-VFVPCGHLVTCKQCAEAV---DKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCB-CCSSSCCCCBCHHHHHHC---SBCTTTCCBCCC
T ss_pred CCCCcCCCCCCCE-EEecCCCHHHHHHHhhCC---CCCccCCceecC
Confidence 4577776655442 22334455 899998653 589999999854
No 150
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=51.79 E-value=6.9 Score=19.87 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=10.5
Q ss_pred CeeecHHHHHhhcC-CCcccccCccc
Q psy10674 66 GNVYCLRDYATMLD-IPRCHACDELI 90 (138)
Q Consensus 66 ~~~yC~~c~~~~~~-~~~C~~C~~~I 90 (138)
+..||..|..+.+. ...|+.|..+|
T Consensus 28 ~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 28 GHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 44455555443221 13455554443
No 151
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=51.23 E-value=11 Score=20.12 Aligned_cols=50 Identities=6% Similarity=0.075 Sum_probs=36.4
Q ss_pred cccccCCccccCCceee-eCCeeecHHHHHhhcC-CCcccccCcccccCcEEE
Q psy10674 47 FVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLD-IPRCHACDELIFVNEYTL 97 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~-~~~~~yC~~c~~~~~~-~~~C~~C~~~I~~~~~~~ 97 (138)
|.|..+...+.+ .... ..|..|++.+..+.+. ..+|...++++...+++.
T Consensus 4 ~~CpIs~~~m~d-PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip 55 (61)
T 2bay_A 4 MLCAISGKVPRR-PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE 55 (61)
T ss_dssp CCCTTTCSCCSS-EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred EEecCCCCCCCC-CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEE
Confidence 778888888865 4555 7899999987755431 136999999987766653
No 152
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=51.15 E-value=6 Score=21.72 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=17.7
Q ss_pred CcccccCcccccCc-EEEeC---CCccccCC
Q psy10674 81 PRCHACDELIFVNE-YTLAE---NKTFHVKH 107 (138)
Q Consensus 81 ~~C~~C~~~I~~~~-~~~~~---~~~~H~~C 107 (138)
..|..|++++.++. +|.-. .+.||..|
T Consensus 9 ~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~C 39 (65)
T 2vpb_A 9 YPCGICTNEVNDDQDAILCEASCQKWFHRIC 39 (65)
T ss_dssp CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHH
T ss_pred CcCccCCCccCCCCCeEecccCccccCchhc
Confidence 47899999986543 55444 45677544
No 153
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=50.27 E-value=6.9 Score=24.80 Aligned_cols=46 Identities=26% Similarity=0.504 Sum_probs=34.0
Q ss_pred cCcccccCCccccCCceeeeCCeeecHHHHHhhcC--CCcccccCcccc
Q psy10674 45 QCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLD--IPRCHACDELIF 91 (138)
Q Consensus 45 ~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~--~~~C~~C~~~I~ 91 (138)
+-|.|.+|...+.. .....=|-.||..|..+.+. ...|+.|..+|.
T Consensus 30 ~~~~C~IC~~~~~~-pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 30 AKYLCSACRNVLRR-PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCcCCCCCChhhcC-cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 34789999888855 34456788999999877542 248999998764
No 154
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=49.15 E-value=14 Score=20.31 Aligned_cols=42 Identities=19% Similarity=0.465 Sum_probs=27.5
Q ss_pred cccccCCccccCCceeeeCCee-ecHHHHHhhcCCCcccccCccccc
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNV-YCLRDYATMLDIPRCHACDELIFV 92 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~-yC~~c~~~~~~~~~C~~C~~~I~~ 92 (138)
+.|.+|...+... ....=|-. +|..|..+. ..|+.|..+|..
T Consensus 25 ~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIAI-VFVPCGHLVTCKQCAEAV---DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCCE-EEETTCCBCCCHHHHTTC---SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCE-EEcCCCChhHHHHhhhcC---ccCCCcCcCccC
Confidence 4677776666442 23344555 888887654 589999988853
No 155
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.80 E-value=9.9 Score=20.17 Aligned_cols=46 Identities=20% Similarity=0.444 Sum_probs=28.3
Q ss_pred CcccccCCccccCC-----c-eeeeCCeeecHHHHHhhcC-CCcccccCcccc
Q psy10674 46 CFVCSTCDELLVDL-----M-YFHYKGNVYCLRDYATMLD-IPRCHACDELIF 91 (138)
Q Consensus 46 Cf~C~~C~~~l~~~-----~-~~~~~~~~yC~~c~~~~~~-~~~C~~C~~~I~ 91 (138)
-+.|.+|...+... . ....=+-.||..|..+.+. ...|+.|..+|.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 36677777665321 1 2334567788888865431 257888888774
No 156
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=47.72 E-value=21 Score=25.38 Aligned_cols=50 Identities=10% Similarity=0.266 Sum_probs=35.9
Q ss_pred CcccccCCccccCCceee-eCCeeecHHHHHhhcC---CCcccc--cCcccccCcEE
Q psy10674 46 CFVCSTCDELLVDLMYFH-YKGNVYCLRDYATMLD---IPRCHA--CDELIFVNEYT 96 (138)
Q Consensus 46 Cf~C~~C~~~l~~~~~~~-~~~~~yC~~c~~~~~~---~~~C~~--C~~~I~~~~~~ 96 (138)
=|+|..|...+... ... .=|..||+.|..+... ...|+. |.+.+...+++
T Consensus 181 el~CPIcl~~f~DP-Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~ 236 (267)
T 3htk_C 181 ELTCPITCKPYEAP-LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFV 236 (267)
T ss_dssp CSBCTTTSSBCSSE-EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEE
T ss_pred eeECcCccCcccCC-eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCC
Confidence 48899999988653 332 5588999999876652 237998 98888766554
No 157
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=46.82 E-value=8.2 Score=20.69 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=26.0
Q ss_pred cccccCCccccCC-c-eeeeCCeeecHHHHHhhc-CCCcccccCccccc
Q psy10674 47 FVCSTCDELLVDL-M-YFHYKGNVYCLRDYATML-DIPRCHACDELIFV 92 (138)
Q Consensus 47 f~C~~C~~~l~~~-~-~~~~~~~~yC~~c~~~~~-~~~~C~~C~~~I~~ 92 (138)
..|.+|...+... . ....=+..||..|..+.+ ....|+.|...|..
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 5677776666332 1 222345667777775432 02467777777743
No 158
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=43.88 E-value=10 Score=19.13 Aligned_cols=18 Identities=6% Similarity=0.102 Sum_probs=14.3
Q ss_pred eeeeCCeeecHHHHHhhc
Q psy10674 61 YFHYKGNVYCLRDYATML 78 (138)
Q Consensus 61 ~~~~~~~~yC~~c~~~~~ 78 (138)
|...+.+++|..|++++.
T Consensus 22 ~mSVnTQP~CHEC~errq 39 (49)
T 2eqg_A 22 FMSVNTQPLCHECSERRQ 39 (49)
T ss_dssp BCCTTTTTSCHHHHHHHH
T ss_pred EEEecCccchHHHHHHHh
Confidence 344788999999998764
No 159
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.52 E-value=41 Score=18.00 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=27.0
Q ss_pred cccccCCccccCCcee--eeCCeeecHHHHHhhcC-CCcccccCccccc
Q psy10674 47 FVCSTCDELLVDLMYF--HYKGNVYCLRDYATMLD-IPRCHACDELIFV 92 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~--~~~~~~yC~~c~~~~~~-~~~C~~C~~~I~~ 92 (138)
..|.+|-..+...... ..=+..||..|..+.+. ...|+.|..+|..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4566776666432211 13466788888755321 2478888888754
No 160
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=41.39 E-value=5.6 Score=27.57 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=21.4
Q ss_pred cccccccccccCCCeEEEec-cccCC----CCCCcccCcc
Q psy10674 14 FCCYECDKKVQFENYTGKIT-QSQES----EVLWHPQCFV 48 (138)
Q Consensus 14 ~~C~~C~~~i~~~~~~~~~~-~~~~~----~~~~H~~Cf~ 48 (138)
-.|..|+..|..+++.+... ..... ...||..||.
T Consensus 40 A~Ck~Ck~kI~Kg~LRig~~v~~~~~dG~~~~W~H~~Cf~ 79 (223)
T 4av1_A 40 ASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 79 (223)
T ss_dssp CBCTTTCCBCCTTCEEEEEEEEETTTTEEEEEEEEHHHHT
T ss_pred ccCcccCCccCCCceEEEEEecCCCCCCCCceeEChhhhh
Confidence 46889999999777654211 00001 1367888887
No 161
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=40.78 E-value=11 Score=15.14 Aligned_cols=12 Identities=17% Similarity=0.750 Sum_probs=8.5
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 568888877653
No 162
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=38.45 E-value=12 Score=15.21 Aligned_cols=11 Identities=27% Similarity=0.926 Sum_probs=8.2
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 67888887765
No 163
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.94 E-value=35 Score=17.11 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=18.7
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhh
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATM 77 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~ 77 (138)
+.|.+|...+... ....=+-.||..|..+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-VIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSSC-CCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCcc-EeCCCCCccCHHHHHHH
Confidence 5677777766442 23345666788887665
No 164
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=36.78 E-value=25 Score=19.05 Aligned_cols=11 Identities=18% Similarity=0.594 Sum_probs=5.3
Q ss_pred cccccCccccc
Q psy10674 82 RCHACDELIFV 92 (138)
Q Consensus 82 ~C~~C~~~I~~ 92 (138)
.|+.|++++..
T Consensus 22 ~C~~CKk~lqK 32 (62)
T 2das_A 22 TCANCKKPLQK 32 (62)
T ss_dssp BCTTTCCBCCT
T ss_pred Chhhccchhhc
Confidence 45555554443
No 165
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=36.04 E-value=17 Score=14.59 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=7.5
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 56777777665
No 166
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=35.91 E-value=26 Score=18.72 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=12.8
Q ss_pred cccccCcccc--cCcEEE--eCCCccccCCcc
Q psy10674 82 RCHACDELIF--VNEYTL--AENKTFHVKHFC 109 (138)
Q Consensus 82 ~C~~C~~~I~--~~~~~~--~~~~~~H~~CF~ 109 (138)
.|..|+..-. ++.++. .=+..||..|..
T Consensus 8 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~ 39 (66)
T 2yt5_A 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHT 39 (66)
T ss_dssp CBSSSCCCCCBTTBCEEECSSSCCEEETTTSS
T ss_pred CCCCCCCCCCCCCCCEEECCCCChHHHhhhCC
Confidence 5666665421 133443 234556655543
No 167
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=35.49 E-value=14 Score=15.15 Aligned_cols=12 Identities=17% Similarity=0.791 Sum_probs=9.0
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 678888887763
No 168
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=35.47 E-value=21 Score=19.72 Aligned_cols=8 Identities=25% Similarity=0.579 Sum_probs=3.7
Q ss_pred CccccCCc
Q psy10674 101 KTFHVKHF 108 (138)
Q Consensus 101 ~~~H~~CF 108 (138)
+.||..|.
T Consensus 41 ~~yH~~Cl 48 (70)
T 3asl_A 41 MAFHIYCL 48 (70)
T ss_dssp CEEEGGGS
T ss_pred CceecccC
Confidence 44554443
No 169
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=35.29 E-value=12 Score=21.43 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=25.6
Q ss_pred cccccCCccccCCc-e-eeeCCeeecHHHHHhhcC-CCcccccCcccc
Q psy10674 47 FVCSTCDELLVDLM-Y-FHYKGNVYCLRDYATMLD-IPRCHACDELIF 91 (138)
Q Consensus 47 f~C~~C~~~l~~~~-~-~~~~~~~yC~~c~~~~~~-~~~C~~C~~~I~ 91 (138)
..|.+|-..+.... . ...=+..||..|..+.+. ...|+.|...|.
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 56777776663322 1 223456777777655321 246777777664
No 170
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=34.83 E-value=10 Score=15.35 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=7.8
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 56788877665
No 171
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=34.44 E-value=12 Score=21.63 Aligned_cols=35 Identities=26% Similarity=0.509 Sum_probs=20.8
Q ss_pred CcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeee
Q psy10674 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIP 124 (138)
Q Consensus 81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~ 124 (138)
..|+.|+..... ...-..|+ |..|+..+.|..|..
T Consensus 28 y~Cp~CG~~~v~----r~atGiW~-----C~~Cg~~~aggay~~ 62 (83)
T 1vq8_Z 28 HACPNCGEDRVD----RQGTGIWQ-----CSYCDYKFTGGSYKP 62 (83)
T ss_dssp EECSSSCCEEEE----EEETTEEE-----ETTTCCEEECCSSSS
T ss_pred CcCCCCCCccee----ccCCCeEE-----CCCCCCEecCCEecc
Confidence 478888764421 12234455 888888777665543
No 172
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=34.43 E-value=12 Score=19.02 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=11.3
Q ss_pred ccccCcccccCcEEE--eCCCccccCCc
Q psy10674 83 CHACDELIFVNEYTL--AENKTFHVKHF 108 (138)
Q Consensus 83 C~~C~~~I~~~~~~~--~~~~~~H~~CF 108 (138)
|..|++.-.++.++. .=++.||..|.
T Consensus 3 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl 30 (51)
T 1f62_A 3 CKVCRKKGEDDKLILCDECNKAFHLFCL 30 (51)
T ss_dssp CTTTCCSSCCSCCEECTTTCCEECHHHH
T ss_pred CCCCCCCCCCCCEEECCCCChhhCcccC
Confidence 555554433333333 22345565543
No 173
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=34.30 E-value=26 Score=19.56 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=27.5
Q ss_pred cccccCCccccCCceeeeCCee-ecHHHHHhhcCCCcccccCccccc
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNV-YCLRDYATMLDIPRCHACDELIFV 92 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~-yC~~c~~~~~~~~~C~~C~~~I~~ 92 (138)
..|..|-..+... .+..=|-. +|..|.... ..|+.|..+|..
T Consensus 19 ~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEINS-TFCPCGHTVCCESCAAQL---QSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBCCE-EEETTCBCCBCHHHHTTC---SBCTTTCCBCCE
T ss_pred CEeEEeCcccCcE-EEECCCCHHHHHHHHHhc---CcCCCCCchhhC
Confidence 3566776655442 33334444 899998754 489999999954
No 174
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.06 E-value=23 Score=19.57 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=18.0
Q ss_pred CCcccccCcccccCc---EEEeCCCccc
Q psy10674 80 IPRCHACDELIFVNE---YTLAENKTFH 104 (138)
Q Consensus 80 ~~~C~~C~~~I~~~~---~~~~~~~~~H 104 (138)
...|.-|+.+|.++. +|...|+.|.
T Consensus 4 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 31 (66)
T 3j21_V 4 WNVCSYCGKPFEPGTGKMYVRNDGRVLF 31 (66)
T ss_dssp CCBCTTTCSBCCTTCCEEEECSSSCEEE
T ss_pred eeEecCcCCcccCCCCeEEEecCCcEEE
Confidence 368999999998875 3435667665
No 175
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=33.91 E-value=14 Score=20.50 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=12.2
Q ss_pred eeCCeeecHHHHHhhc
Q psy10674 63 HYKGNVYCLRDYATML 78 (138)
Q Consensus 63 ~~~~~~yC~~c~~~~~ 78 (138)
.=++.+||..||.+.-
T Consensus 24 gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 24 GCDGDLYCARCFREGH 39 (67)
T ss_dssp TTTSEEECSSHHHHHT
T ss_pred CCCCceehHHHHHHHc
Confidence 3467899999998763
No 176
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=33.63 E-value=24 Score=21.13 Aligned_cols=9 Identities=33% Similarity=0.863 Sum_probs=4.7
Q ss_pred cccccCccc
Q psy10674 82 RCHACDELI 90 (138)
Q Consensus 82 ~C~~C~~~I 90 (138)
.|..|+++.
T Consensus 5 ~C~iC~~p~ 13 (105)
T 2xb1_A 5 PCGACRSEV 13 (105)
T ss_dssp BCTTTCSBC
T ss_pred CCCCCCCcc
Confidence 455555554
No 177
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=39.59 E-value=8.9 Score=15.39 Aligned_cols=12 Identities=25% Similarity=0.894 Sum_probs=9.0
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 578888887763
No 178
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.70 E-value=12 Score=15.14 Aligned_cols=11 Identities=27% Similarity=0.914 Sum_probs=8.1
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 56888887765
No 179
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=31.65 E-value=18 Score=14.67 Aligned_cols=12 Identities=17% Similarity=0.603 Sum_probs=8.8
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 568888887763
No 180
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=31.34 E-value=20 Score=20.21 Aligned_cols=36 Identities=17% Similarity=0.419 Sum_probs=24.5
Q ss_pred CcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeec
Q psy10674 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPV 125 (138)
Q Consensus 81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~ 125 (138)
..|+.|++.-... ..-..|| |..|++.+.|..|...
T Consensus 27 y~C~fCgk~~vkR----~a~GIW~-----C~~C~~~~AGGAy~~~ 62 (72)
T 3jyw_9 27 YDCSFCGKKTVKR----GAAGIWT-----CSCCKKTVAGGAYTVS 62 (72)
T ss_dssp BCCSSCCSSCBSB----CSSSCBC-----CSSSCCCCCCSSSSSC
T ss_pred ccCCCCCCceeEe----cCCCeEE-----CCCCCCEEeCCccccC
Confidence 5788888764322 2335677 8889988888777643
No 181
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=31.22 E-value=12 Score=18.78 Aligned_cols=13 Identities=23% Similarity=0.629 Sum_probs=9.7
Q ss_pred cccccccccccCC
Q psy10674 14 FCCYECDKKVQFE 26 (138)
Q Consensus 14 ~~C~~C~~~i~~~ 26 (138)
-+|..|++||.-.
T Consensus 18 RvC~~CgkPi~ls 30 (44)
T 2lo3_A 18 RVCEKCGKPLALT 30 (44)
T ss_dssp EECTTTCCEEETT
T ss_pred hhhcccCCcchHH
Confidence 3688999988733
No 182
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.17 E-value=23 Score=19.17 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=25.7
Q ss_pred cccccCCccccCCceeeeCCee-ecHHHHHhhcCCCcccccCccccc
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNV-YCLRDYATMLDIPRCHACDELIFV 92 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~-yC~~c~~~~~~~~~C~~C~~~I~~ 92 (138)
..|.+|-...... .+..=+-. +|..|.... ..|+.|..+|..
T Consensus 16 ~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~~---~~CP~CR~~i~~ 58 (68)
T 2ea5_A 16 KDCVVCQNGTVNW-VLLPCRHTCLCDGCVKYF---QQCPMCRQFVQE 58 (68)
T ss_dssp SCCSSSSSSCCCC-EETTTTBCCSCTTHHHHC---SSCTTTCCCCCC
T ss_pred CCCCCcCcCCCCE-EEECCCChhhhHHHHhcC---CCCCCCCcchhc
Confidence 4466665544332 22233334 888888753 589999999954
No 183
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.69 E-value=77 Score=17.94 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=7.3
Q ss_pred cccccCCcccc
Q psy10674 47 FVCSTCDELLV 57 (138)
Q Consensus 47 f~C~~C~~~l~ 57 (138)
-.|..|+.+|+
T Consensus 26 r~CarC~~~LG 36 (76)
T 2csz_A 26 RTCARCQESLG 36 (76)
T ss_dssp CBCSSSCCBCS
T ss_pred cchhhhCcccc
Confidence 45777777773
No 184
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=30.33 E-value=57 Score=17.11 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=25.7
Q ss_pred ccccCCccccCCcee-eeCCee-ecHHHHHhhc-CCCcccccCccccc
Q psy10674 48 VCSTCDELLVDLMYF-HYKGNV-YCLRDYATML-DIPRCHACDELIFV 92 (138)
Q Consensus 48 ~C~~C~~~l~~~~~~-~~~~~~-yC~~c~~~~~-~~~~C~~C~~~I~~ 92 (138)
.|.+|-....+..+. ..=|-. +|..|..++. ....|+.|..+|..
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 355555444332222 122333 8998886643 12489999999953
No 185
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=30.23 E-value=13 Score=14.99 Aligned_cols=11 Identities=36% Similarity=0.924 Sum_probs=7.6
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 56777877654
No 186
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=30.11 E-value=60 Score=19.21 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=23.4
Q ss_pred CCcccCcccccCCc-cccCCceee--eCCeeecHHHHHh
Q psy10674 41 LWHPQCFVCSTCDE-LLVDLMYFH--YKGNVYCLRDYAT 76 (138)
Q Consensus 41 ~~H~~Cf~C~~C~~-~l~~~~~~~--~~~~~yC~~c~~~ 76 (138)
..|+. ..|..|++ ++.+..|.= =.+--+|..||..
T Consensus 27 ~~H~g-v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~ 64 (98)
T 2dip_A 27 DKHLG-IPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS 64 (98)
T ss_dssp SSCCC-CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT
T ss_pred cccCC-CCCcCCCCCCcccCeEECCCCCCccHHHHHHcc
Confidence 56765 78999986 676654432 3346688888765
No 187
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=30.09 E-value=25 Score=19.41 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=17.2
Q ss_pred CcccccCcccccCc---EEEeCCCccc
Q psy10674 81 PRCHACDELIFVNE---YTLAENKTFH 104 (138)
Q Consensus 81 ~~C~~C~~~I~~~~---~~~~~~~~~H 104 (138)
..|.-|+.+|.++. +|...|+.|.
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 30 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTH 30 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEE
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEE
Confidence 57899999998875 3335666665
No 188
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=29.98 E-value=14 Score=16.38 Aligned_cols=8 Identities=38% Similarity=0.247 Sum_probs=4.8
Q ss_pred CCCccCCC
Q psy10674 128 SRPGQDSP 135 (138)
Q Consensus 128 ~~~y~~~~ 135 (138)
.||||+..
T Consensus 2 ~RpYCe~C 9 (26)
T 2hqh_E 2 SRPYCEIC 9 (26)
T ss_dssp --CEETTT
T ss_pred CCccchHH
Confidence 58999874
No 189
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=29.94 E-value=17 Score=14.75 Aligned_cols=12 Identities=42% Similarity=0.979 Sum_probs=8.2
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 567788777653
No 190
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=29.65 E-value=58 Score=20.75 Aligned_cols=7 Identities=43% Similarity=1.179 Sum_probs=3.9
Q ss_pred cccccCc
Q psy10674 82 RCHACDE 88 (138)
Q Consensus 82 ~C~~C~~ 88 (138)
.|..|+.
T Consensus 65 ~C~vC~~ 71 (142)
T 2lbm_A 65 QCRWCAE 71 (142)
T ss_dssp SCSSSCC
T ss_pred eecccCC
Confidence 5555554
No 191
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=29.51 E-value=36 Score=20.55 Aligned_cols=38 Identities=11% Similarity=0.236 Sum_probs=26.4
Q ss_pred CCeeecHHHHHhhcCCCcccccCcccccCcEEE--eCCCccccCCcc
Q psy10674 65 KGNVYCLRDYATMLDIPRCHACDELIFVNEYTL--AENKTFHVKHFC 109 (138)
Q Consensus 65 ~~~~yC~~c~~~~~~~~~C~~C~~~I~~~~~~~--~~~~~~H~~CF~ 109 (138)
.+..+|..| ..|..|++.-.++.++. .=++.||..|..
T Consensus 50 ~~~W~C~~C-------~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ 89 (114)
T 2kwj_A 50 TYKWQCIEC-------KSCILCGTSENDDQLLFCDDCDRGYHMYCLN 89 (114)
T ss_dssp HTTCCCGGG-------CCCTTTTCCTTTTTEEECSSSCCEEETTTSS
T ss_pred CCccCcccc-------CccCcccccCCCCceEEcCCCCccccccccC
Confidence 445667666 37888988776666765 346789988765
No 192
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=29.28 E-value=20 Score=15.74 Aligned_cols=11 Identities=36% Similarity=1.117 Sum_probs=8.7
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 12 ~~C~~C~k~f~ 22 (37)
T 1p7a_A 12 FQCPDCDRSFS 22 (37)
T ss_dssp BCCTTTCCCBS
T ss_pred ccCCCCCcccC
Confidence 67888888765
No 193
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=28.97 E-value=2 Score=24.74 Aligned_cols=41 Identities=17% Similarity=0.455 Sum_probs=20.2
Q ss_pred CcccccccccccCCCeEEEeccccCCCCCCcccCcccccCCccccCC
Q psy10674 13 HFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDL 59 (138)
Q Consensus 13 ~~~C~~C~~~i~~~~~~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~ 59 (138)
-|+|..|+..|....+.....+ ..-..-|.|..|++.+.+.
T Consensus 10 ~F~C~~Cgd~lKK~kv~~H~~~------Cr~~~~~SCIDC~~~F~~~ 50 (79)
T 1wjv_A 10 FFTCNACGESVKKIQVEKHVSN------CRNCECLSCIDCGKDFWGD 50 (79)
T ss_dssp EEEESSSCCEEETTHHHHHHHH------CTTCCEEEETTTTEEEEGG
T ss_pred EEEcCCCCCeeecccchhHHhh------CCCCCcEEecccCCeeCCC
Confidence 3677888776653222111110 1112236777777766443
No 194
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=28.60 E-value=13 Score=25.02 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=18.7
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhh
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATM 77 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~ 77 (138)
.+|..|+...... |+.+|..|+.+.
T Consensus 164 ~~C~~CGE~~~~~------g~~~C~~C~~~~ 188 (191)
T 3d00_A 164 VLCPQCREAYPAQ------DGELCLSCQGGS 188 (191)
T ss_dssp EECTTTCCEEEGG------GCSSCHHHHTTC
T ss_pred EECCcCCCChhhC------CCcCCccccCCC
Confidence 4699998766433 889999998653
No 195
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=28.45 E-value=33 Score=19.34 Aligned_cols=7 Identities=29% Similarity=0.567 Sum_probs=3.3
Q ss_pred CccccCC
Q psy10674 101 KTFHVKH 107 (138)
Q Consensus 101 ~~~H~~C 107 (138)
+.||..|
T Consensus 49 ~~yH~~C 55 (77)
T 3shb_A 49 MAFHIYC 55 (77)
T ss_dssp CEEETTT
T ss_pred CccCccc
Confidence 4455444
No 196
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=28.34 E-value=17 Score=20.18 Aligned_cols=11 Identities=18% Similarity=0.733 Sum_probs=7.3
Q ss_pred CcccccCcccc
Q psy10674 81 PRCHACDELIF 91 (138)
Q Consensus 81 ~~C~~C~~~I~ 91 (138)
..|..|++++.
T Consensus 10 ~~CP~Cgkp~~ 20 (68)
T 1lv3_A 10 VNCPTCGKTVV 20 (68)
T ss_dssp EECTTTCCEEE
T ss_pred CcCCCCCCccc
Confidence 36777777763
No 197
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.31 E-value=15 Score=14.91 Aligned_cols=11 Identities=18% Similarity=0.767 Sum_probs=7.9
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 56788877765
No 198
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=28.31 E-value=19 Score=21.33 Aligned_cols=11 Identities=36% Similarity=0.498 Sum_probs=7.0
Q ss_pred cccccCCcccc
Q psy10674 47 FVCSTCDELLV 57 (138)
Q Consensus 47 f~C~~C~~~l~ 57 (138)
..|.+|-..|.
T Consensus 26 ~~C~ICl~~~~ 36 (114)
T 1v87_A 26 EDCIICMEKLA 36 (114)
T ss_dssp CEETTTTEETT
T ss_pred CcCccCChhhc
Confidence 46777766663
No 199
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.08 E-value=39 Score=17.23 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=18.3
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhhcCCCcccccCccc
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELI 90 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~~~~~C~~C~~~I 90 (138)
+.|.+|...+... ....=+-.+|..|..+. ...|+.|...+
T Consensus 7 ~~C~IC~~~~~~p-~~l~CgH~fC~~Ci~~~--~~~CP~Cr~~~ 47 (56)
T 1bor_A 7 LRCQQCQAEAKCP-KLLPCLHTLCSGCLEAS--GMQCPICQAPW 47 (56)
T ss_dssp SSCSSSCSSCBCC-SCSTTSCCSBTTTCSSS--SSSCSSCCSSS
T ss_pred CCceEeCCccCCe-EEcCCCCcccHHHHccC--CCCCCcCCcEe
Confidence 4566665555331 12223344555554331 23555555544
No 200
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.05 E-value=22 Score=15.40 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=9.0
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elr_A 10 HLCDMCGKKFKS 21 (36)
T ss_dssp CBCTTTCCBCSS
T ss_pred eecCcCCCCcCc
Confidence 678888887753
No 201
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.78 E-value=12 Score=15.25 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=7.8
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 56778877665
No 202
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=33.32 E-value=13 Score=15.24 Aligned_cols=12 Identities=17% Similarity=1.049 Sum_probs=9.1
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (30)
T 2lvr_A 4 YVCIHCQRQFAD 15 (30)
Confidence 678888887763
No 203
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.16 E-value=49 Score=19.00 Aligned_cols=8 Identities=25% Similarity=1.028 Sum_probs=3.8
Q ss_pred cccccCcc
Q psy10674 82 RCHACDEL 89 (138)
Q Consensus 82 ~C~~C~~~ 89 (138)
.|..|+..
T Consensus 18 ~C~vC~~~ 25 (88)
T 1wev_A 18 ACVVCRQM 25 (88)
T ss_dssp SCSSSCCC
T ss_pred cCCCCCCC
Confidence 44445443
No 204
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=27.00 E-value=28 Score=20.84 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=8.0
Q ss_pred ccCcccccCCcccc
Q psy10674 44 PQCFVCSTCDELLV 57 (138)
Q Consensus 44 ~~Cf~C~~C~~~l~ 57 (138)
.+--.|.+|...+.
T Consensus 35 ~~~d~CaIC~~~~~ 48 (106)
T 3dpl_R 35 IVVDNCAICRNHIM 48 (106)
T ss_dssp SCSCCCSSSCSCTT
T ss_pred CCCCCCccCChhHh
Confidence 34456777766553
No 205
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=27.00 E-value=23 Score=15.27 Aligned_cols=12 Identities=42% Similarity=0.979 Sum_probs=8.9
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 678888887763
No 206
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.68 E-value=14 Score=15.17 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=9.1
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 678888887763
No 207
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.60 E-value=18 Score=15.53 Aligned_cols=11 Identities=27% Similarity=0.772 Sum_probs=8.5
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 2elx_A 8 YVCALCLKKFV 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCcchhC
Confidence 67888888765
No 208
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=25.14 E-value=19 Score=15.57 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=8.5
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 1srk_A 8 FVCRICLSAFT 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCcccC
Confidence 67888888765
No 209
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.09 E-value=62 Score=18.14 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=20.6
Q ss_pred CcccccCcccccC-cEEEeC-----CCccccCCc----------cccccccccC
Q psy10674 81 PRCHACDELIFVN-EYTLAE-----NKTFHVKHF----------CCYECDKELC 118 (138)
Q Consensus 81 ~~C~~C~~~I~~~-~~~~~~-----~~~~H~~CF----------~C~~C~~~l~ 118 (138)
..|..|.....++ .++..= ...||.+|. .|..|...+.
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 4566666554332 233211 256777764 4777776654
No 210
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=24.73 E-value=33 Score=23.20 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=26.0
Q ss_pred ccccCCccccCCceee----eCC----eeecHHHHH-------------hhcCC-------CcccccCcccc
Q psy10674 48 VCSTCDELLVDLMYFH----YKG----NVYCLRDYA-------------TMLDI-------PRCHACDELIF 91 (138)
Q Consensus 48 ~C~~C~~~l~~~~~~~----~~~----~~yC~~c~~-------------~~~~~-------~~C~~C~~~I~ 91 (138)
.|..|+.......|.. .+| +.+|+.|.. +++.. .+|+.|++++.
T Consensus 77 ~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~ 148 (200)
T 3gox_A 77 ICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSI 148 (200)
T ss_dssp ECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEE
T ss_pred ECCCCCCCcchhhhcccccCCCCCcccCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCC
Confidence 4566666554445543 245 678988853 11111 36999998875
No 211
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.44 E-value=48 Score=17.13 Aligned_cols=10 Identities=10% Similarity=0.484 Sum_probs=4.8
Q ss_pred CCccccCCcc
Q psy10674 100 NKTFHVKHFC 109 (138)
Q Consensus 100 ~~~~H~~CF~ 109 (138)
.+.||..|..
T Consensus 28 ~~~~H~~Cl~ 37 (56)
T 2yql_A 28 SRVYHLDCLD 37 (56)
T ss_dssp SCEECSSSSS
T ss_pred CcceECccCC
Confidence 3455555443
No 212
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=24.26 E-value=22 Score=17.69 Aligned_cols=8 Identities=25% Similarity=0.164 Sum_probs=5.9
Q ss_pred CCCccCCC
Q psy10674 128 SRPGQDSP 135 (138)
Q Consensus 128 ~~~y~~~~ 135 (138)
.||||+++
T Consensus 19 eRpYCe~C 26 (42)
T 3e2u_E 19 ERPYCEIC 26 (42)
T ss_dssp -CCEETTT
T ss_pred cCcccccc
Confidence 69999874
No 213
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=23.75 E-value=19 Score=16.84 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=9.4
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 9 ~~C~~CgK~F~~ 20 (36)
T 1fv5_A 9 FMCLPCGIAFSS 20 (36)
T ss_dssp CEETTTTEECSC
T ss_pred eECCCCCCccCC
Confidence 678888888764
No 214
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=23.57 E-value=21 Score=15.23 Aligned_cols=11 Identities=36% Similarity=0.950 Sum_probs=8.2
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (32)
T 2kfq_A 3 FACPACPKRFM 13 (32)
T ss_dssp SSSSSSCTTHH
T ss_pred CCCCCCCcccC
Confidence 67888887765
No 215
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=23.37 E-value=31 Score=19.05 Aligned_cols=10 Identities=40% Similarity=0.962 Sum_probs=5.2
Q ss_pred cccccCCccc
Q psy10674 47 FVCSTCDELL 56 (138)
Q Consensus 47 f~C~~C~~~l 56 (138)
+.|-.|+.+|
T Consensus 9 L~CP~ck~~L 18 (68)
T 2hf1_A 9 LVCPLCKGPL 18 (68)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCCcC
Confidence 3455555554
No 216
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.15 E-value=30 Score=15.61 Aligned_cols=12 Identities=25% Similarity=0.985 Sum_probs=9.6
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 11 ~~C~~C~k~f~~ 22 (42)
T 2yte_A 11 YSCAECKETFSD 22 (42)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCCccCC
Confidence 789999888763
No 217
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.14 E-value=31 Score=18.98 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=11.9
Q ss_pred cccccCCccccCCceeeeCCeeecHHH
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRD 73 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c 73 (138)
+.|-.|+.+|. +...++.++|..|
T Consensus 11 L~CP~ck~~L~---~~~~~g~LvC~~c 34 (67)
T 2jny_A 11 LACPKDKGPLR---YLESEQLLVNERL 34 (67)
T ss_dssp CBCTTTCCBCE---EETTTTEEEETTT
T ss_pred hCCCCCCCcCe---EeCCCCEEEcCCC
Confidence 55666666552 2233445555443
No 218
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=23.14 E-value=62 Score=17.03 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=25.4
Q ss_pred ccccCCccccCCceee-eCCee-ecHHHHHhhc-CCCcccccCcccc
Q psy10674 48 VCSTCDELLVDLMYFH-YKGNV-YCLRDYATML-DIPRCHACDELIF 91 (138)
Q Consensus 48 ~C~~C~~~l~~~~~~~-~~~~~-yC~~c~~~~~-~~~~C~~C~~~I~ 91 (138)
.|.+|-....+..+.. .=|-. +|..|..+.. ....|+.|..+|.
T Consensus 10 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 10 PCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp CCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4555655544332221 22334 7888886543 1247999999995
No 219
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=23.00 E-value=32 Score=18.91 Aligned_cols=9 Identities=22% Similarity=0.641 Sum_probs=4.5
Q ss_pred cccccCccc
Q psy10674 82 RCHACDELI 90 (138)
Q Consensus 82 ~C~~C~~~I 90 (138)
.|..|+++-
T Consensus 20 ~C~~C~~~~ 28 (75)
T 2k16_A 20 ICPGCNKPD 28 (75)
T ss_dssp CBTTTTBCC
T ss_pred CCCCCCCCC
Confidence 455555544
No 220
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=22.97 E-value=33 Score=18.93 Aligned_cols=10 Identities=30% Similarity=0.610 Sum_probs=5.2
Q ss_pred cccccCCccc
Q psy10674 47 FVCSTCDELL 56 (138)
Q Consensus 47 f~C~~C~~~l 56 (138)
+.|-.|+.+|
T Consensus 9 L~CP~ck~~L 18 (68)
T 2jr6_A 9 LVCPVTKGRL 18 (68)
T ss_dssp CBCSSSCCBC
T ss_pred eECCCCCCcC
Confidence 4555555554
No 221
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.55 E-value=23 Score=15.45 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=8.4
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elq_A 10 FKCSLCEYATR 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 67888887765
No 222
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=22.18 E-value=44 Score=17.53 Aligned_cols=8 Identities=13% Similarity=0.700 Sum_probs=3.8
Q ss_pred CccccCCc
Q psy10674 101 KTFHVKHF 108 (138)
Q Consensus 101 ~~~H~~CF 108 (138)
+.||..|.
T Consensus 25 ~~fH~~Cl 32 (60)
T 2puy_A 25 RVYHLDCL 32 (60)
T ss_dssp CEECGGGS
T ss_pred cCEECCcC
Confidence 44555443
No 223
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.98 E-value=32 Score=19.13 Aligned_cols=10 Identities=40% Similarity=1.009 Sum_probs=5.0
Q ss_pred cccccCCccc
Q psy10674 47 FVCSTCDELL 56 (138)
Q Consensus 47 f~C~~C~~~l 56 (138)
+.|-.|+.+|
T Consensus 9 L~CP~ck~~L 18 (70)
T 2js4_A 9 LVCPVCKGRL 18 (70)
T ss_dssp CBCTTTCCBE
T ss_pred eECCCCCCcC
Confidence 4455555544
No 224
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=21.91 E-value=86 Score=15.51 Aligned_cols=13 Identities=15% Similarity=0.025 Sum_probs=9.0
Q ss_pred eCCeeecHHHHHh
Q psy10674 64 YKGNVYCLRDYAT 76 (138)
Q Consensus 64 ~~~~~yC~~c~~~ 76 (138)
.+|..+|..|...
T Consensus 19 p~G~~LCNaCGl~ 31 (43)
T 2vut_I 19 PEGQPLCNACGLF 31 (43)
T ss_dssp TTSCEECHHHHHH
T ss_pred CCCCcccHHHHHH
Confidence 4566888888643
No 225
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.86 E-value=37 Score=19.61 Aligned_cols=36 Identities=19% Similarity=0.600 Sum_probs=25.3
Q ss_pred CcccccCcccccCcEEEeCCCccccCCccccccccccCCCCeeec
Q psy10674 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPV 125 (138)
Q Consensus 81 ~~C~~C~~~I~~~~~~~~~~~~~H~~CF~C~~C~~~l~~~~f~~~ 125 (138)
..|+.|++.- +....-..|| |..|+..+.|..|...
T Consensus 36 y~CpfCGk~~----vkR~a~GIW~-----C~kCg~~~AGGAy~~~ 71 (83)
T 3j21_i 36 HTCPVCGRKA----VKRISTGIWQ-----CQKCGATFAGGAYLPV 71 (83)
T ss_dssp BCCSSSCSSC----EEEEETTEEE-----ETTTCCEEECCSSSSS
T ss_pred cCCCCCCCce----eEecCcCeEE-----cCCCCCEEeCCccccC
Confidence 5899998763 3333345677 8999999888777643
No 226
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.80 E-value=24 Score=15.27 Aligned_cols=11 Identities=18% Similarity=0.628 Sum_probs=8.3
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elt_A 10 YKCPQCSYASA 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred CCCCCCCcccC
Confidence 67888887765
No 227
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.74 E-value=24 Score=15.50 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=9.4
Q ss_pred CccccccccccCC
Q psy10674 107 HFCCYECDKELCN 119 (138)
Q Consensus 107 CF~C~~C~~~l~~ 119 (138)
-|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 3778888887653
No 228
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.61 E-value=24 Score=15.35 Aligned_cols=11 Identities=36% Similarity=0.812 Sum_probs=8.2
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2els_A 10 FTCEYCNKVFK 20 (36)
T ss_dssp EECTTTCCEES
T ss_pred EECCCCCceeC
Confidence 67888887765
No 229
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.59 E-value=24 Score=15.33 Aligned_cols=11 Identities=18% Similarity=0.781 Sum_probs=8.3
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elv_A 10 YDCHICERKFK 20 (36)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCccC
Confidence 67888887765
No 230
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.54 E-value=50 Score=19.19 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=13.2
Q ss_pred ccCcccccCCccccCCceeeeCCeeecHHHH
Q psy10674 44 PQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74 (138)
Q Consensus 44 ~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~ 74 (138)
.+...|.+|+..-. .+..+.|..|-
T Consensus 14 ~~~~~C~vC~~~~~------~~~ll~CD~C~ 38 (92)
T 2e6r_A 14 IDSYICQVCSRGDE------DDKLLFCDGCD 38 (92)
T ss_dssp CCCCCCSSSCCSGG------GGGCEECTTTC
T ss_pred cCCCCCccCCCcCC------CCCEEEcCCCC
Confidence 34556777765421 23356666553
No 231
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.45 E-value=23 Score=15.51 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=8.5
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elo_A 10 YSCPVCEKSFS 20 (37)
T ss_dssp CEETTTTEECS
T ss_pred cCCCCCCCccC
Confidence 67888888765
No 232
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.40 E-value=33 Score=15.66 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=9.7
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2en7_A 13 YVCNECGKAFRS 24 (44)
T ss_dssp SCCTTTCCCCSS
T ss_pred eECCCCCCccCC
Confidence 789999988764
No 233
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.22 E-value=35 Score=15.85 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=10.2
Q ss_pred CccccccccccCC
Q psy10674 107 HFCCYECDKELCN 119 (138)
Q Consensus 107 CF~C~~C~~~l~~ 119 (138)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2enf_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CeECCCCCcccCC
Confidence 3789999988773
No 234
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.01 E-value=35 Score=15.44 Aligned_cols=12 Identities=17% Similarity=0.589 Sum_probs=9.5
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2eos_A 12 YPCEICGTRFRH 23 (42)
T ss_dssp BCCSSSCCCBSS
T ss_pred EECCCCCCccCC
Confidence 679999888763
No 235
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.00 E-value=35 Score=15.38 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=9.6
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2ytb_A 12 YRCDQCGKAFSQ 23 (42)
T ss_dssp BCCTTTTCCBSS
T ss_pred eeCCCccchhCC
Confidence 779999888763
No 236
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=20.99 E-value=43 Score=15.56 Aligned_cols=14 Identities=36% Similarity=0.833 Sum_probs=10.6
Q ss_pred CccccccccccCCC
Q psy10674 107 HFCCYECDKELCNQ 120 (138)
Q Consensus 107 CF~C~~C~~~l~~~ 120 (138)
=|.|..|++.+...
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ely_A 12 PFKCVECGKGFSRR 25 (46)
T ss_dssp SBCCSSSCCCBSST
T ss_pred CcccCccCcccCCH
Confidence 37899999888743
No 237
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=20.91 E-value=17 Score=15.59 Aligned_cols=9 Identities=44% Similarity=1.095 Sum_probs=6.0
Q ss_pred ccccccccc
Q psy10674 108 FCCYECDKE 116 (138)
Q Consensus 108 F~C~~C~~~ 116 (138)
|.|..|.++
T Consensus 6 ffcetcskp 14 (26)
T 1loi_A 6 FFCETCSKP 14 (26)
T ss_dssp HHHHTSSCT
T ss_pred HHHHhcCCc
Confidence 557777666
No 238
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.88 E-value=24 Score=15.69 Aligned_cols=11 Identities=18% Similarity=0.688 Sum_probs=8.3
Q ss_pred ccccccccccC
Q psy10674 108 FCCYECDKELC 118 (138)
Q Consensus 108 F~C~~C~~~l~ 118 (138)
|.|..|++.+.
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elm_A 10 YYCSQCHYSSI 20 (37)
T ss_dssp EECSSSSCEEE
T ss_pred eECCCCCcccC
Confidence 67888887765
No 239
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=20.88 E-value=27 Score=17.64 Aligned_cols=9 Identities=33% Similarity=0.851 Sum_probs=3.9
Q ss_pred cccccCccc
Q psy10674 82 RCHACDELI 90 (138)
Q Consensus 82 ~C~~C~~~I 90 (138)
.|..|+..+
T Consensus 26 vC~~CG~v~ 34 (50)
T 1pft_A 26 VCAKCGYVI 34 (50)
T ss_dssp EESSSCCBC
T ss_pred ECcccCCcc
Confidence 344444444
No 240
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.82 E-value=36 Score=15.82 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=10.4
Q ss_pred CccccccccccCC
Q psy10674 107 HFCCYECDKELCN 119 (138)
Q Consensus 107 CF~C~~C~~~l~~ 119 (138)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2emg_A 12 PFICSECGKVFTH 24 (46)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CEECCccCcccCC
Confidence 3789999988873
No 241
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.44 E-value=37 Score=15.83 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=9.8
Q ss_pred ccccccccccCC
Q psy10674 108 FCCYECDKELCN 119 (138)
Q Consensus 108 F~C~~C~~~l~~ 119 (138)
|.|..|++.+..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eon_A 13 YKCQVCGKAFRV 24 (46)
T ss_dssp CBCSSSCCBCSS
T ss_pred cCCCCCCcccCc
Confidence 789999988773
No 242
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=20.39 E-value=77 Score=23.78 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=28.2
Q ss_pred cccccCCccccCCceeeeCCeeecHHHHHhhc--CCCcccccCcccccC
Q psy10674 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATML--DIPRCHACDELIFVN 93 (138)
Q Consensus 47 f~C~~C~~~l~~~~~~~~~~~~yC~~c~~~~~--~~~~C~~C~~~I~~~ 93 (138)
..|.+|-..+.. .....=|-.+|..|..+.. ....|+.|..+|...
T Consensus 333 ~~C~ICle~~~~-pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDKD-VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBCC-EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCCC-eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 467777655533 2334456667888875432 136888888888654
No 243
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.37 E-value=37 Score=15.78 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=10.3
Q ss_pred CccccccccccCC
Q psy10674 107 HFCCYECDKELCN 119 (138)
Q Consensus 107 CF~C~~C~~~l~~ 119 (138)
=|.|..|++.+..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq2_A 12 PYQCNECGKAFSQ 24 (46)
T ss_dssp SSSCCSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 3789999988773
No 244
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=20.22 E-value=64 Score=18.89 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=13.5
Q ss_pred CCcccCcccccCCccccCCceeeeCCeeecHHHH
Q psy10674 41 LWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74 (138)
Q Consensus 41 ~~H~~Cf~C~~C~~~l~~~~~~~~~~~~yC~~c~ 74 (138)
.+-.+-.+| +|+..-.+ +..+.|..|.
T Consensus 23 ~~~~d~vrC-iC~~~~~~------~~mi~Cd~C~ 49 (98)
T 2lv9_A 23 SYGTDVTRC-ICGFTHDD------GYMICCDKCS 49 (98)
T ss_dssp CCCCCBCCC-TTSCCSCS------SCEEEBTTTC
T ss_pred CCCCCCEEe-ECCCccCC------CcEEEcCCCC
Confidence 444445556 56654321 2356666663
No 245
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=20.12 E-value=38 Score=18.90 Aligned_cols=11 Identities=27% Similarity=0.893 Sum_probs=6.4
Q ss_pred cccccccccCC
Q psy10674 109 CCYECDKELCN 119 (138)
Q Consensus 109 ~C~~C~~~l~~ 119 (138)
+|.+|+++++.
T Consensus 6 RCFTCGkvi~~ 16 (70)
T 1twf_J 6 RCFSCGKVVGD 16 (70)
T ss_dssp BCTTTCCBCTT
T ss_pred ecCCCCCChHH
Confidence 35556666654
Done!