RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10674
(138 letters)
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1,
LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 71.3 bits (175), Expect = 2e-17
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
C EC K + ++ WH CF C+ C L + + + C +
Sbjct: 8 CVECRKPIGADSKEVHY-----KNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCT- 61
Query: 76 TMLDIPRCHACDELIFVNE-YTLAENKTFHVKHFCCYEC 113
T D P+C C + I + + +H F
Sbjct: 62 TREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
Score = 40.1 bits (94), Expect = 2e-05
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 81 PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKELCNQSYI 123
C C + I + + +N+ +H F C +C L N++++
Sbjct: 6 SGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFV 49
Score = 25.8 bits (57), Expect = 2.5
Identities = 2/16 (12%), Positives = 4/16 (25%)
Query: 4 AENKTFHVKHFCCYEC 19
+ +H F
Sbjct: 85 YKGTVWHKDCFSGPSS 100
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 66.1 bits (161), Expect = 1e-14
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTL-AEN 100
WH +C CS C L + F +VYC D+ +C AC I + A++
Sbjct: 83 WHSKCLKCSDCHVPLAE-RCFSRGESVYCKDDFFKRFG-TKCAACQLGIPPTQVVRRAQD 140
Query: 101 KTFHVKHFCCYECDKELC 118
+H+ F C C ++L
Sbjct: 141 FVYHLHCFACVVCKRQLA 158
Score = 42.6 bits (100), Expect = 6e-06
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 44 PQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTF 103
+ + G+ + T +IP C CD+ I A ++ +
Sbjct: 25 ERLITRLENTQFDAANGIDDEGGSGGHMGSGGTP-EIPMCAGCDQHILDRFILKALDRHW 83
Query: 104 HVKHFCCYECDKELCNQSY 122
H K C +C L + +
Sbjct: 84 HSKCLKCSDCHVPLAERCF 102
Score = 26.4 bits (58), Expect = 2.9
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 4 AENKTFHVKHFCCYECDK 21
A++ +H+ F C C +
Sbjct: 138 AQDFVYHLHCFACVVCKR 155
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein
ISL-1; protein-protein complex, LIM domain, Zn finger,
activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Length = 169
Score = 65.6 bits (160), Expect = 1e-14
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTL-AEN 100
WH +C CS C L + F +VYC D+ +C AC I + A++
Sbjct: 29 WHSKCLKCSDCHVPLAE-RCFSRGESVYCKDDFFKRFG-TKCAACQLGIPPTQVVRRAQD 86
Query: 101 KTFHVKHFCCYECDKELC 118
+H+ F C C ++L
Sbjct: 87 FVYHLHCFACVVCKRQLA 104
Score = 40.6 bits (95), Expect = 3e-05
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 75 ATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
+ +IP C CD+ I A ++ +H K C +C L + +
Sbjct: 1 GSTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFS 49
Score = 32.5 bits (74), Expect = 0.024
Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 33/107 (30%)
Query: 4 AENKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFH 63
A++ +H+ F C C +++ TG D Y
Sbjct: 84 AQDFVYHLHCFACVVCKRQLA----TG---------------------------DEFYLM 112
Query: 64 YKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCC 110
+ C DY T +A + H
Sbjct: 113 EDSRLVCKADYETAKQ-GGSGGSGGSG-GGTPMVAASPERHDGGLQA 157
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 61.7 bits (150), Expect = 2e-13
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHY--KGNVYCLRDYATMLDI-PRCHACDELIFVNEYTL- 97
WH C C C L ++ Y G C RDY + C +CD+ I E T+
Sbjct: 25 WHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMR 84
Query: 98 AENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
++K +H++ F C C K C + S
Sbjct: 85 VKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 117
Score = 35.1 bits (81), Expect = 0.002
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKEL 117
+ C C + I + A ++ +H C C L
Sbjct: 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRL 39
Score = 33.2 bits (76), Expect = 0.008
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGN-VYCLRDYATML 78
+H +CF C+ C + + + + C +D
Sbjct: 90 YHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWT 127
Score = 26.2 bits (58), Expect = 2.3
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 4 AENKTFHVKHFCCYECDKK 22
++K +H++ F C C K
Sbjct: 85 VKDKVYHLECFKCAACQKH 103
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 61.3 bits (149), Expect = 3e-13
Identities = 23/87 (26%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTL-AEN 100
WH + F C CD +L +Y C Y C C I + N
Sbjct: 26 WHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH-AVVCQGCHNAIDPEVQRVTYNN 84
Query: 101 KTFH--VKHFCCYECDKELCNQSYIPV 125
++H + F C C K L Q ++PV
Sbjct: 85 FSWHASTECFLCSCCSKCLIGQKFMPV 111
Score = 57.4 bits (139), Expect = 7e-12
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 79 DIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
+ PRC CDELIF NEYT AEN+ +H+KHFCC++CD L + Y+
Sbjct: 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYV 46
Score = 45.1 bits (107), Expect = 4e-07
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 30/104 (28%)
Query: 1 YTLAENKTFHVKHFCCYECDKKVQFENY----------------------------TGKI 32
YT AEN+ +H+KHFCC++CD + E Y ++
Sbjct: 18 YTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV 77
Query: 33 TQSQESEVLWHP--QCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
+ + WH +CF+CS C + L+ + +G V+C +
Sbjct: 78 QRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVEC 121
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB:
2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 61.2 bits (148), Expect = 8e-13
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 42 WHPQCFVCSTCDELLVDLM--YFHYKGNVYCLRDYATMLDI-PRCHACDELIFVNEYTL- 97
WH +C CS+C L D+ + G + C DY + C AC + I +E +
Sbjct: 28 WHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMR 87
Query: 98 AENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
A+ +H+K F C C L
Sbjct: 88 AQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSL 120
Score = 38.8 bits (90), Expect = 1e-04
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 78 LDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQS 121
L RC C I A + +H + C C +L +
Sbjct: 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIG 46
Score = 26.5 bits (58), Expect = 2.7
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 4 AENKTFHVKHFCCYECDKK 22
A+ +H+K F C C +
Sbjct: 88 AQGNVYHLKCFTCSTCRNR 106
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 57.3 bits (139), Expect = 3e-12
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 66 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
+ Y PRC C + + T ++ +H + C C L Q +
Sbjct: 2 SSGSSGPCYENKF-APRCARCSKTLTQGGVT-YRDQPWHRECLVCTGCQTPLAGQQFT 57
Score = 39.2 bits (92), Expect = 3e-05
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM 77
WH +C VC+ C L + + YC+ + +
Sbjct: 37 WHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGEL 72
Score = 29.6 bits (67), Expect = 0.084
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 4 AENKTFHVKHFCCYECDK 21
++ +H + C C
Sbjct: 32 YRDQPWHRECLVCTGCQT 49
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 53.5 bits (129), Expect = 1e-10
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 66 GNVYCLRDYATMLDIPRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKELCNQSYIP 124
+ + P+C C + I + + +H F C C + + S+ P
Sbjct: 2 SSGSSGKCTTRED-SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFP 60
Score = 37.7 bits (88), Expect = 8e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
WH CF CS C +++ +F + YC+ +
Sbjct: 39 WHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCH 71
Score = 28.1 bits (63), Expect = 0.35
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 1 YTLAENKTFHVKHFCCYECDK 21
+ +H F C C +
Sbjct: 31 NVEYKGTVWHKDCFTCSNCKQ 51
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 90
Score = 53.2 bits (128), Expect = 2e-10
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 61 YFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQ 120
V P C C+++I + +A K++H + F C C +
Sbjct: 6 SGDQDTLVQRAEHIPAGKRTPMCAHCNQVI-RGPFLVALGKSWHPEEFNCAHCKNTMAYI 64
Query: 121 SYI 123
++
Sbjct: 65 GFV 67
Score = 42.4 bits (100), Expect = 2e-06
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
C C++ + G + WHP+ F C+ C + + + KG +YC Y
Sbjct: 27 MCAHCNQVI-----RGPFLVALGKS--WHPEEFNCAHCKNTMAYIGFVEEKGALYCELCY 79
Query: 75 ATM 77
Sbjct: 80 EKF 82
Score = 29.7 bits (67), Expect = 0.10
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 1 YTLAENKTFHVKHFCCYECDK 21
+ +A K++H + F C C
Sbjct: 39 FLVALGKSWHPEEFNCAHCKN 59
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 50.2 bits (120), Expect = 2e-09
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
C +C + G + ++++ HP+CFVC+ C+ L YF +G +YC
Sbjct: 27 LCDKCGSGI-----VGAVVKARDK--YRHPECFVCADCNLNLKQKGYFFVEGELYCETHA 79
Query: 75 ATMLDIPRCHA 85
Sbjct: 80 RARTS-GPSSG 89
Score = 42.5 bits (100), Expect = 2e-06
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
+P C C I V A +K H + F C +C+ L + Y
Sbjct: 25 MPLCDKCGSGI-VGAVVKARDKYRHPECFVCADCNLNLKQKGY 66
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 51.9 bits (124), Expect = 3e-09
Identities = 17/136 (12%), Positives = 31/136 (22%), Gaps = 16/136 (11%)
Query: 4 AENKTFHVKHFCCYECDKKVQFENYTGK---------------ITQSQESEVLWHPQCFV 48
E +FH F C C K + +
Sbjct: 25 CEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDK 84
Query: 49 CSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHF 108
+ + C C + ++ E + K++H F
Sbjct: 85 GESLGIKYEEGQSHRPTNPNASRMAQKVG-GSDGCPRCGQAVYAAEKVIGAGKSWHKSCF 143
Query: 109 CCYECDKELCNQSYIP 124
C +C K L + +
Sbjct: 144 RCAKCGKSLESTTLAD 159
Score = 40.0 bits (93), Expect = 5e-05
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
+C C + ++ E E +FH F C C K L + +
Sbjct: 8 KKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTV 49
Score = 37.7 bits (87), Expect = 3e-04
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDE 88
WH CF C+ C + L G +YC YA P+ +
Sbjct: 138 WHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG-PKGFGFGQ 183
Score = 37.3 bits (86), Expect = 4e-04
Identities = 18/115 (15%), Positives = 28/115 (24%), Gaps = 19/115 (16%)
Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
C C K V Y + Q + S +H CF+C C + L + +YC Y
Sbjct: 10 CGVCQKAV----YFAEEVQCEGS--SFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYG 63
Query: 76 TMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
P+ + + T
Sbjct: 64 KKYG-PKGKGK------------GMGAGTLSTDKGESLGIKYEEGQSHRPTNPNA 105
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1,
LIM domain protein CLP-36, contractIle protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 79
Score = 48.6 bits (116), Expect = 6e-09
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85
HP+C+VC+ C L +F + +YC + +
Sbjct: 37 RHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVS-GPSSG 79
Score = 40.1 bits (94), Expect = 1e-05
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
+P C C I V + ++ H + + C +C L + +
Sbjct: 15 LPMCDKCGTGI-VGVFVKLRDRHRHPECYVCTDCGTNLKQKGH 56
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 48.5 bits (116), Expect = 7e-09
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
+C CD+ ++ E + K +H C C K L +
Sbjct: 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHA 52
Score = 35.5 bits (82), Expect = 5e-04
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
C +CDK V Y + S WH C C C + L + + G +C +
Sbjct: 12 CPKCDKTV----YFAEKVSSLG--KDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPC 64
Score = 31.6 bits (72), Expect = 0.018
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 1 YTLAENKTFHVKHFCCYECDKKVQFENYTGK 31
+ K +H C C K + +
Sbjct: 24 KVSSLGKDWHKFCLKCERCSKTLTPGGHAEH 54
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 47.8 bits (114), Expect = 1e-08
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 81 PRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKELCNQSYIP 124
C AC E + +T+H F C C++ L ++S++P
Sbjct: 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVP 50
Score = 40.4 bits (95), Expect = 7e-06
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
C C + V + + WH CF+CS C++ L + KG YC+ Y
Sbjct: 7 GCSACGETVMP---GSRKLEYGGQT--WHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCY 61
Score = 29.3 bits (66), Expect = 0.10
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 1 YTLAENKTFHVKHFCCYECDK 21
+T+H F C C++
Sbjct: 21 KLEYGGQTWHEHCFLCSGCEQ 41
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM
domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 47.7 bits (114), Expect = 1e-08
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
P+C CD+ ++ E + K +H C +C K L + +
Sbjct: 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHA 43
Score = 35.0 bits (81), Expect = 8e-04
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
C +CDK+V Y + S WH C C C + L + ++G YC
Sbjct: 3 CPKCDKEV----YFAERVTSLGK--DWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCY 56
Query: 76 TMLDIPRCHAC 86
+ + P+
Sbjct: 57 SAMFGPKGFGR 67
Score = 29.6 bits (67), Expect = 0.078
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 4 AENKTFHVKHFCCYECDKKVQFENYTGK 31
+ K +H C +C K + +
Sbjct: 18 SLGKDWHRPCLKCEKCGKTLTSGGHAEH 45
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 46.9 bits (112), Expect = 2e-08
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
P C AC I A K +HV+HF C +C+K +
Sbjct: 6 PICGACRRPI-EGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHY 47
Score = 43.4 bits (103), Expect = 4e-07
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
C C + + G++ + + WH + FVC+ C++ + ++ KG YC Y
Sbjct: 7 ICGACRRPI-----EGRVVNAMGKQ--WHVEHFVCAKCEKPFLGHRHYERKGLAYCETHY 59
Query: 75 ATM 77
+
Sbjct: 60 NQL 62
Score = 29.6 bits (67), Expect = 0.063
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 1 YTLAENKTFHVKHFCCYECDKKVQFENYTGK 31
A K +HV+HF C +C+K + +
Sbjct: 19 VVNAMGKQWHVEHFVCAKCEKPFLGHRHYER 49
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 47.0 bits (112), Expect = 3e-08
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 66 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
+ +D+ M P+C C+ + + Y A + +H + F C +C S+
Sbjct: 2 SSGSSGKDFLAMF-SPKCGGCNRPV-LENYLSAMDTVWHPECFVCGDCFTSFSTGSFF 57
Score = 41.6 bits (98), Expect = 4e-06
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM 77
WHP+CFVC C +F G +C Y
Sbjct: 37 WHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72
Score = 25.4 bits (56), Expect = 3.0
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 4 AENKTFHVKHFCCYECDK 21
A + +H + F C +C
Sbjct: 32 AMDTVWHPECFVCGDCFT 49
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 46.6 bits (111), Expect = 4e-08
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 81 PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKELCNQSYIP 124
C C + I + + ++H F C+ C + + +S+IP
Sbjct: 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIP 50
Score = 40.1 bits (94), Expect = 9e-06
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
WH CF+C C + + + +C+ Y
Sbjct: 29 WHETCFICHRCQQPIGTKSFIPKDNQNFCVPCY 61
Score = 28.1 bits (63), Expect = 0.32
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 4 AENKTFHVKHFCCYECDK 21
+ ++H F C+ C +
Sbjct: 24 YKGSSWHETCFICHRCQQ 41
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 46.2 bits (110), Expect = 5e-08
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
C C + I T + +H + F C C K+L Q +
Sbjct: 6 SGCVQCKKPITTGGVT-YREQPWHKECFVCTACRKQLSGQRFT 47
Score = 39.2 bits (92), Expect = 2e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
WH +CFVC+ C + L + YCL +
Sbjct: 27 WHKECFVCTACRKQLSGQRFTARDDFAYCLNCF 59
Score = 29.2 bits (66), Expect = 0.12
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 4 AENKTFHVKHFCCYECDK 21
+ +H + F C C K
Sbjct: 22 YREQPWHKECFVCTACRK 39
>1x61_A Thyroid receptor interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 45.1 bits (107), Expect = 1e-07
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 41 LWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHAC 86
++H CFVCSTC L ++ + YC Y L+ +
Sbjct: 28 VFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE--SGPSS 71
Score = 40.1 bits (94), Expect = 1e-05
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 81 PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKELCNQSYIPV 125
C C E + + + A ++ FHV F C C +L Q + V
Sbjct: 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAV 51
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein
1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 69
Score = 45.1 bits (107), Expect = 1e-07
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYI 123
C C++ I T +++ +H F C C K+L Q +
Sbjct: 6 SGCVKCNKAITSGGIT-YQDQPWHADCFVCVTCSKKLAGQRFT 47
Score = 40.4 bits (95), Expect = 6e-06
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH 84
WH CFVC TC + L + + YC+ Y +
Sbjct: 27 WHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS-GPSS 68
Score = 28.9 bits (65), Expect = 0.12
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 4 AENKTFHVKHFCCYECDK 21
+++ +H F C C K
Sbjct: 22 YQDQPWHADCFVCVTCSK 39
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 45.2 bits (107), Expect = 1e-07
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 66 GNVYCLRDYATMLDIPRCHACDELI----FVNEYTLAENKTFHVKHFCCYECDKELCNQS 121
+ Y + +C C I + E +++H F C +C L N+
Sbjct: 2 SSGSSGDCYKNFV-AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKR 60
Query: 122 YIP 124
++
Sbjct: 61 FVF 63
Score = 36.3 bits (84), Expect = 3e-04
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
C C + + + WH CF C C L + + ++ VYC
Sbjct: 17 KCAGCKNPITGFGKGSSVVAYEGQS--WHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCA 74
Score = 25.5 bits (56), Expect = 2.4
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 4 AENKTFHVKHFCCYECDK 21
E +++H F C +C
Sbjct: 37 YEGQSWHDYCFHCKKCSV 54
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 42.4 bits (100), Expect = 1e-06
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM 77
WHP+CF C C E+L D+ + G C +
Sbjct: 27 WHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62
Score = 39.7 bits (93), Expect = 1e-05
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIP 124
CH C E I + A N ++H + F C C + L + ++
Sbjct: 5 SSGCHQCGEFI-IGRVIKAMNNSWHPECFRCDLCQEVLADIGFVK 48
Score = 25.9 bits (57), Expect = 2.0
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 4 AENKTFHVKHFCCYECDK 21
A N ++H + F C C +
Sbjct: 22 AMNNSWHPECFRCDLCQE 39
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 42.0 bits (99), Expect = 2e-06
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
C C KI S L+H QCFVC+ C + + +++ ++G YC D+
Sbjct: 14 CERCKGGFAP---AEKIVNSNGE--LYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68
Query: 76 TML 78
+
Sbjct: 69 MLF 71
Score = 39.3 bits (92), Expect = 2e-05
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 81 PRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKELCNQSYI 123
C C E + + +H + F C +C ++ +
Sbjct: 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY 55
Score = 26.2 bits (58), Expect = 1.4
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 4 AENKTFHVKHFCCYECDKKVQFENY 28
+ + +H + F C +C ++ +
Sbjct: 30 SNGELYHEQCFVCAQCFQQFPEGLF 54
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat,
ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 40.8 bits (96), Expect = 5e-06
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
C C KI S L+H QCFVC+ C + + +++ ++G YC D+
Sbjct: 14 CERCKGGFAPA---EKIVNSNGE--LYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68
Query: 76 TM 77
+
Sbjct: 69 ML 70
Score = 38.9 bits (91), Expect = 3e-05
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 81 PRCHACDELIFVNE-YTLAENKTFHVKHFCCYECDKELCNQSYI 123
C C E + + +H + F C +C ++ +
Sbjct: 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY 55
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 41.3 bits (97), Expect = 5e-06
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 66 GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC 118
+ +DY CH C L+ + +A +H + F C C +
Sbjct: 2 SSGSSGKDYWGKFG-EFCHGCSLLM-TGPFMVAGEFKYHPECFACMSCKVIIE 52
Score = 34.4 bits (79), Expect = 0.002
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 42 WHPQCFVCSTCDELLV--DLMYFHYKGNVYCLRDYATMLDIPRCHA 85
+HP+CF C +C ++ D +YC + + ++
Sbjct: 37 YHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVV-SGPSSG 81
Score = 26.7 bits (59), Expect = 1.2
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 4 AENKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCF 47
A +H + F C C ++ G + L+ +C
Sbjct: 32 AGEFKYHPECFACMSCKVIIE----DGDAYALVQHATLYCGKCH 71
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein
2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 82
Score = 40.9 bits (96), Expect = 6e-06
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 66 GNVYCLRDYATMLDIPRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKELCNQSYIP 124
+ Y C C +LI + L E++ FH F C C + L ++ +
Sbjct: 2 SSGSSGPCYDNTF-ANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTC 60
Score = 37.9 bits (88), Expect = 8e-05
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHA 85
+H CF C C L D + + C Y + +
Sbjct: 39 FHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFS-SGPSS 81
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 40.7 bits (95), Expect = 8e-06
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
C C E ++V E FH F C+ C+ L Y
Sbjct: 16 DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGY 57
Score = 28.4 bits (63), Expect = 0.26
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 1 YTLAENKTFHVKHFCCYECDKKVQFENY 28
FH F C+ C+ + Y
Sbjct: 30 RLCVNGHFFHRSCFRCHTCEATLWPGGY 57
Score = 27.2 bits (60), Expect = 0.85
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYK--GNVYCLRD 73
C C + + + +H CF C TC+ L Y + G+ YCL+
Sbjct: 18 CALCGEHLYVLERL------CVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQH 71
Query: 74 Y 74
Sbjct: 72 L 72
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 40.1 bits (94), Expect = 1e-05
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYA 75
C C + V Y + Q +H CF+C C + L + VYC Y
Sbjct: 10 CGACGRTV----YHAEEVQCDGRS--FHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYG 63
Query: 76 TMLDIPRCHACDE 88
P+ + +
Sbjct: 64 KKYG-PKGYGYGQ 75
Score = 38.2 bits (89), Expect = 7e-05
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
+C AC ++ E + ++FH F C C K L + +
Sbjct: 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTV 49
Score = 25.1 bits (55), Expect = 4.4
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 4 AENKTFHVKHFCCYECDKKVQFENYTGK 31
+ ++FH F C C K +
Sbjct: 25 CDGRSFHRCCFLCMVCRKNLDSTTVAIH 52
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting
protein 1, zyxin related protein 1 (ZRP-1), structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 81
Score = 39.7 bits (93), Expect = 2e-05
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
+ +C C + I ++ A K +H F C C + L + S+
Sbjct: 15 LEKCATCSQPI-LDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQI 64
Score = 37.3 bits (87), Expect = 1e-04
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYK-GNVYCLRDYATMLDIPRCHA 85
+HP CF C C L + + ++C+ D+ +
Sbjct: 37 YHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA-SGPSS 80
Score = 26.2 bits (58), Expect = 1.7
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 4 AENKTFHVKHFCCYECDK 21
A K +H F C C +
Sbjct: 32 AMGKAYHPGCFTCVVCHR 49
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 39.4 bits (92), Expect = 2e-05
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 73 DYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
DY + RC +CD+ I E A KT+H F C C +
Sbjct: 9 DYQRLYG-TRCFSCDQFI-EGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKEC 64
Score = 34.4 bits (79), Expect = 0.002
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGN-VYC 70
C+ CD+ + G++ + +HP CFVC+ C + G C
Sbjct: 17 RCFSCDQFI-----EGEVVSALGKT--YHPDCFVCAVCRLPFPPGDRVTFNGKECMC 66
Score = 27.4 bits (61), Expect = 0.57
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 4 AENKTFHVKHFCCYECDK 21
A KT+H F C C
Sbjct: 32 ALGKTYHPDCFVCAVCRL 49
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 40.0 bits (93), Expect = 3e-05
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Query: 42 WHPQCFVCSTCDELLVDLM--YFHYKGNVYCLRDYATMLDIPRCHACDELIFVNEYTLAE 99
WH +C CS+C L D+ + G + C DY + + +
Sbjct: 28 WHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVMVV 87
Query: 100 NKTFHVKHFCCYECDKELCNQSYIPVTESRPGQD 133
+ + E ++ + + D
Sbjct: 88 GEPTLMGGEFGDEDERLITRLENTQFDAANGIDD 121
Score = 35.0 bits (80), Expect = 0.002
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 78 LDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKEL 117
L RC C I A + +H + C C +L
Sbjct: 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQL 42
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 39.4 bits (92), Expect = 3e-05
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
C C + ++ E LA + FH+ F C C+ +L +Y
Sbjct: 16 ETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTY 57
Score = 36.0 bits (83), Expect = 5e-04
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 16 CYECDKKVQF-ENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
C EC K V E + ++H CF CS C+ L Y G +YC +
Sbjct: 18 CVECQKTVYPMERLLAN-------QQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHF 70
Query: 75 ATM 77
+
Sbjct: 71 NQL 73
Score = 27.9 bits (62), Expect = 0.54
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 3 LAENKTFHVKHFCCYECDKKVQFENYTGK 31
LA + FH+ F C C+ K+ Y
Sbjct: 32 LANQQVFHISCFRCSYCNNKLSLGTYASL 60
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 38.6 bits (90), Expect = 4e-05
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
WH CF C C LV + + ++ C
Sbjct: 31 WHNDCFNCKKCSLSLVGRGFLTERDDILCPDCG 63
Score = 36.0 bits (83), Expect = 4e-04
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 81 PRCHACDELI---FVNEYTLAENKTFHVKHFCCYECDKELCNQSYIP 124
C C I +Y E + +H F C +C L + ++
Sbjct: 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLT 52
Score = 25.2 bits (55), Expect = 3.2
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 4 AENKTFHVKHFCCYECDK 21
E + +H F C +C
Sbjct: 26 FEERQWHNDCFNCKKCSL 43
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 38.9 bits (90), Expect = 7e-05
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 41 LWHPQCFVCSTCDELLVDLMYFHYK-GNVYCLRDYATMLDIPRCHACDELIFVNEYTLAE 99
++H +CF C+ C + + ++ C +D I + + E
Sbjct: 31 VYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGSGGDVMVVGE 90
Query: 100 N 100
Sbjct: 91 P 91
Score = 35.8 bits (82), Expect = 0.001
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 81 PRCHACDELIFVNEYTL-AENKTFHVKHFCCYECDKELC 118
C +CD+ I E T+ ++K +H++ F C C K
Sbjct: 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFS 47
Score = 25.0 bits (54), Expect = 6.3
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 4 AENKTFHVKHFCCYECDKK 22
++K +H++ F C C K
Sbjct: 27 VKDKVYHLECFKCAACQKH 45
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain,
AN actin- interacting protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 37.9 bits (88), Expect = 7e-05
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 15 CCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFHYKGNVYC 70
C C K + I WH +CF C C LV + ++C
Sbjct: 7 GCVACSKPISGLTGAKFICFQDSQ---WHSECFNCGKCSVSLVGKGFLTQNKEIFC 59
Score = 37.5 bits (87), Expect = 1e-04
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 81 PRCHACDELI---FVNEYTLAENKTFHVKHFCCYECDKELCNQSYIP 124
C AC + I ++ ++ +H + F C +C L + ++
Sbjct: 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLT 52
Score = 25.2 bits (55), Expect = 3.8
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 4 AENKTFHVKHFCCYECDK 21
++ +H + F C +C
Sbjct: 26 FQDSQWHSECFNCGKCSV 43
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 38.6 bits (89), Expect = 9e-05
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 42 WHPQCFVCSTCDELLVDLM--YFHYKGNVYCLRDYATM 77
WH +C CS+C L D+ + G + C DY +
Sbjct: 84 WHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRL 121
Score = 37.0 bits (85), Expect = 4e-04
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 78 LDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKEL 117
L RC C I A + +H + C C +L
Sbjct: 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQL 98
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 37.8 bits (88), Expect = 1e-04
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDY 74
WH CF C TC +L Y G YC DY
Sbjct: 38 WHVSCFKCQTCSVILTG-EYISKDGVPYCESDY 69
Score = 35.5 bits (82), Expect = 6e-04
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSY 122
C C E I + LA +K +HV F C C L +
Sbjct: 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYI 57
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 36.3 bits (84), Expect = 3e-04
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 42 WHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATM 77
+HP F C+ C + L KG +YCL + M
Sbjct: 37 YHPDHFNCANCGKEL-TADARELKGELYCLPCHDKM 71
Score = 35.5 bits (82), Expect = 7e-04
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 72 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKEL 117
+ A L C C +I + + +N +H HF C C KEL
Sbjct: 7 GEKARGLGKYICQKCHAII-DEQPLIFKNDPYHPDHFNCANCGKEL 51
Score = 24.8 bits (54), Expect = 5.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 4 AENKTFHVKHFCCYECDK 21
+N +H HF C C K
Sbjct: 32 FKNDPYHPDHFNCANCGK 49
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein;
NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 35.4 bits (81), Expect = 0.001
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 42 WHPQCFVCSTCDELLVDLM--YFHYKGNVYCLRDYATMLDIPRCHACD 87
WH C C C L ++ ++ G C RDY L H
Sbjct: 26 WHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY-LRLGGSGGHMGS 72
Score = 32.3 bits (73), Expect = 0.017
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 80 IPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKEL 117
+ C C + I + A ++ +H C C L
Sbjct: 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRL 40
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 34.7 bits (80), Expect = 0.006
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 72 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYEC 113
R + M P C ACD+ EY ++ FH + C EC
Sbjct: 59 RPFTVMAAFPLCPACDK-----EYRDPLDRRFHAQPVACPEC 95
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 32.4 bits (74), Expect = 0.038
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 72 RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHFCCYEC 113
R +M P C C EY ++ FH + C++C
Sbjct: 153 RAKTSMKVFPMCEKCSR-----EYHDPHDRRFHAQPVACFDC 189
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 29.1 bits (65), Expect = 0.10
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 42 WH--PQCFVCSTCDELLVDLMYFHYKGNVYC 70
WH +CF+CS C + L+ + +G V+C
Sbjct: 26 WHASTECFLCSCCSKCLIGQKFMPVEGMVFC 56
Score = 26.7 bits (59), Expect = 0.74
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 82 RCHACDELIFVNEYTLA-ENKTFHVKH--FCCYECDKELCNQSYIP 124
C C I + N ++H F C C K L Q ++P
Sbjct: 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMP 49
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 29.3 bits (65), Expect = 0.11
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 81 PRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTESRP 130
C +C++ I A K +H C C + + + S
Sbjct: 6 SGCDSCEKYI-TGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 54
Score = 27.8 bits (61), Expect = 0.41
Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 16 CYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDELLVDLMYFH-YKGNVYC 70
C C+K + TG++ ++ E +HP C +C C ++ + + +++
Sbjct: 8 CDSCEKYI-----TGRVLEAGEKH--YHPSCALCVRCGQMFAEGEEMYLQGSSIWH 56
Score = 25.4 bits (55), Expect = 2.5
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 4 AENKTFHVKHFCCYECDKKVQFENYTGKITQSQESEVLWHPQCFVCSTCDE 54
A K +H C C + F Q +WHP C + ++
Sbjct: 22 AGEKHYHPSCALCVRCGQ--MFAEGEEMYLQGSS---IWHPACRQAARTED 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 1.7
Identities = 22/129 (17%), Positives = 39/129 (30%), Gaps = 57/129 (44%)
Query: 34 Q-SQE----------SEV---LWHPQCFVCSTCDELLVDL---------------MYFHY 64
Q SQE S+ +W+ D D + H+
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWN-------RADNHFKDTYGFSILDIVINNPVNLTIHF 1676
Query: 65 KGNVYC-LRD-YATML--DIPRCHACDELIF--VNEYTLAENKTFHVKHFCCYECDKELC 118
G +R+ Y+ M+ I E IF +NE++ + + +K L
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS----------YTFRSEKGLL 1726
Query: 119 NQSYIPVTE 127
+ T+
Sbjct: 1727 SA-----TQ 1730
Score = 26.2 bits (57), Expect = 4.4
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 25/78 (32%)
Query: 77 ML---DIPRCHACDELIFVNEYTLAENKTFHV------KHFCC-------YECDKEL--- 117
ML ++ + D + N + L K + K+ Y + L
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSH-LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 118 -----CNQSYIPVTESRP 130
+QS IP +E +
Sbjct: 397 KAPSGLDQSRIPFSERKL 414
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 4.7
Identities = 16/103 (15%), Positives = 26/103 (25%), Gaps = 25/103 (24%)
Query: 31 KITQSQESEVLWH------PQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCH 84
I + ++W V LV+ K + + L++ +
Sbjct: 386 HIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEK---QPKESTISIPSIY--LEL-KVK 438
Query: 85 ACDELIFVNEYTLAENKTFHVKHFCCYECDKELCNQSYIPVTE 127
NEY L H Y K + IP
Sbjct: 439 L------ENEYAL------HRSIVDHYNIPKTFDSDDLIPPYL 469
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 25.6 bits (55), Expect = 6.5
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 79 DIPRCHACDELIFVNEYTLAENKTFHVKHFCCYECDKELC 118
C+ CD +F + +EN + + C C +
Sbjct: 432 PAYYCNECDVEVFNILFVTSENGSRNTYLVHCEGCARRRS 471
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 25.2 bits (56), Expect = 8.3
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 16/50 (32%)
Query: 41 LWHPQCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELI 90
L +C C N + + + +P+C C L+
Sbjct: 119 LRVVRCTSC----------------NNSFEVESAPKIPPLPKCDKCGSLL 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.471
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,115,876
Number of extensions: 113343
Number of successful extensions: 643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 189
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.4 bits)