RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10674
         (138 letters)



>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
          Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 35

 Score = 28.5 bits (64), Expect = 0.037
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 47 FVCSTCDELLVDLMYFHYKGNVYCLRDYATM 77
          FVC+ C +   + +++ ++G  YC  D+  +
Sbjct: 1  FVCAQCFQQFPEGLFYEFEGRKYCEHDFQML 31


>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 45

 Score = 28.6 bits (64), Expect = 0.043
 Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 80  IPRCHACDELIFVNEYTLAENKTFHVKHF 108
            P C  C+++I    + +A  K++H + F
Sbjct: 18  TPMCAHCNQVI-RGPFLVALGKSWHPEEF 45


>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 35

 Score = 27.7 bits (62), Expect = 0.076
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 72  RDYATMLDIPRCHACDELIFVNEYTLAENKTFHVKHF 108
           +D+  M   P+C  C+  + +  Y  A +  +H + F
Sbjct: 1   KDFLAMFS-PKCGGCNRPV-LENYLSAMDTVWHPECF 35


>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 33

 Score = 23.7 bits (51), Expect = 2.1
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 49 CSTCDELLVDLMYFHY-KGNVYCLRDYATML 78
          CSTC   LV    FHY  G+++C  D  T L
Sbjct: 2  CSTCRNRLVPGDRFHYINGSLFCEHDRPTAL 32


>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein,
           CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 43

 Score = 23.7 bits (51), Expect = 2.2
 Identities = 5/24 (20%), Positives = 11/24 (45%)

Query: 81  PRCHACDELIFVNEYTLAENKTFH 104
             C  C + ++  E  +   K++H
Sbjct: 16  DGCPRCGQAVYAAEKVIGAGKSWH 39


>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin
           homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 36

 Score = 22.4 bits (48), Expect = 5.7
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 82  RCHACDELIFVNEYTLAENKTFH 104
            C  C E ++V E        FH
Sbjct: 10  LCALCGEHLYVLERLCVNGHFFH 32


>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
           domain {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 323

 Score = 24.2 bits (51), Expect = 6.7
 Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 9/71 (12%)

Query: 45  QCFVCSTCDELLVDLMYFHYKGNVYCLRDYATMLDIPRCHACDELI-FVNEYTLAENKTF 103
                +T D LL+    F  KGN      +    ++P     D      N   +  ++  
Sbjct: 43  AMLEMNTKDVLLL----FTNKGNYLYCPVH----ELPDIRWKDLGQHIANIIPIDRDEEI 94

Query: 104 HVKHFCCYECD 114
                      
Sbjct: 95  IKAIPINDFEL 105


>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 35

 Score = 22.0 bits (47), Expect = 7.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 81  PRCHACDELIFVNEYTLAENKTFHVKHF 108
             C  C + ++  E  LA  + FH+  F
Sbjct: 8   ETCVECQKTVYPMERLLANQQVFHISCF 35


>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 335

 Score = 24.1 bits (51), Expect = 8.1
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 4/91 (4%)

Query: 38  SEVLWHPQCFVCSTCDELLVDLMYFHYKG----NVYCLRDYATMLDIPRCHACDELIFVN 93
           S +L        +          +   KG     ++    +  +   P  H CD    V+
Sbjct: 170 SNLLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVD 229

Query: 94  EYTLAENKTFHVKHFCCYECDKELCNQSYIP 124
                  +  + ++   YE      +  YIP
Sbjct: 230 FDNPDYERFPNFQNVVGYETVVGPGDVLYIP 260


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.471 

Gapped
Lambda     K      H
   0.267   0.0617    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 557,770
Number of extensions: 25567
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 33
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.5 bits)