BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10675
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VKJ|A Chain A, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
pdb|1VKJ|B Chain B, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
pdb|1VKJ|C Chain C, Crystal Structure Of Heparan Sulfate 3-O-Sulfotransferase
Isoform 1 In The Presence Of Pap
Length = 285
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 90/190 (47%), Positives = 117/190 (61%), Gaps = 20/190 (10%)
Query: 1 MNASIRLLVIVRDPVTRAISDYTQ-LKIHAAATSPGPVKRFEQLALRENGEINENYRPIA 59
MN +IRLL+I+RDP R +SDYTQ L H P P E L +R+ G +N +Y+ +
Sbjct: 114 MNPTIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYPP--IEDLLMRD-GRLNLDYKALN 170
Query: 60 VSMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFLN 119
S+YH M WL + FP I IV+GDRLI DP PE+Q++ERFL
Sbjct: 171 RSLYHAHMLNWL----------------RFFPLGHIHIVDGDRLIRDPFPEIQKVERFLK 214
Query: 120 LEPHINHDNFYFNHTKGFYCLKDNSMERCLRESKGRKHVRVHPKVISKMRQYFNFHNQLF 179
L P IN NFYFN TKGFYCL+D+ +RCL ESKGR H +V PK++ K+ +YF+ N+ F
Sbjct: 215 LSPQINASNFYFNKTKGFYCLRDSGKDRCLHESKGRAHPQVDPKLLDKLHEYFHEPNKKF 274
Query: 180 YDLVDENFDW 189
+ LV FDW
Sbjct: 275 FKLVGRTFDW 284
>pdb|3UAN|A Chain A, Crystal Structure Of 3-O-Sulfotransferase (3-Ost-1) With
Bound Pap And Heptasaccharide Substrate
pdb|3UAN|B Chain B, Crystal Structure Of 3-O-Sulfotransferase (3-Ost-1) With
Bound Pap And Heptasaccharide Substrate
Length = 269
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/190 (47%), Positives = 117/190 (61%), Gaps = 20/190 (10%)
Query: 1 MNASIRLLVIVRDPVTRAISDYTQ-LKIHAAATSPGPVKRFEQLALRENGEINENYRPIA 59
MN +IRLL+I+RDP R +SDYTQ L H P P E L +R+ G +N +Y+ +
Sbjct: 98 MNPTIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYPP--IEDLLMRD-GRLNLDYKALN 154
Query: 60 VSMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFLN 119
S+YH M WL + FP I IV+GDRLI DP PE+Q++ERFL
Sbjct: 155 RSLYHAHMLNWL----------------RFFPLGHIHIVDGDRLIRDPFPEIQKVERFLK 198
Query: 120 LEPHINHDNFYFNHTKGFYCLKDNSMERCLRESKGRKHVRVHPKVISKMRQYFNFHNQLF 179
L P IN NFYFN TKGFYCL+D+ +RCL ESKGR H +V PK++ K+ +YF+ N+ F
Sbjct: 199 LSPQINASNFYFNKTKGFYCLRDSGKDRCLHESKGRAHPQVDPKLLDKLHEYFHEPNKKF 258
Query: 180 YDLVDENFDW 189
+ LV FDW
Sbjct: 259 FKLVGRTFDW 268
>pdb|1ZRH|A Chain A, Crystal Structure Of Human Heparan Sulfate Glucosamine
3-O- Sulfotransferase 1 In Complex With Pap
Length = 274
Score = 170 bits (430), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 118/189 (62%), Gaps = 18/189 (9%)
Query: 1 MNASIRLLVIVRDPVTRAISDYTQLKIHAAATSPGPVKRFEQLALRENGEINENYRPIAV 60
MN SIRLL+I+RDP R +SDYTQ+ + P E+ +R+ G +N +Y+ +
Sbjct: 103 MNPSIRLLLILRDPSERVLSDYTQV-FYNHMQKHKPYPSIEEFLVRD-GRLNVDYKALNR 160
Query: 61 SMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFLNL 120
S+YH M WL + FP I IV+GDRLI DP PE+Q++ERFL L
Sbjct: 161 SLYHVHMQNWL----------------RFFPLRHIHIVDGDRLIRDPFPEIQKVERFLKL 204
Query: 121 EPHINHDNFYFNHTKGFYCLKDNSMERCLRESKGRKHVRVHPKVISKMRQYFNFHNQLFY 180
P IN NFYFN TKGFYCL+D+ +RCL ESKGR H +V PK+++K+ +YF+ N+ F+
Sbjct: 205 SPQINASNFYFNKTKGFYCLRDSGRDRCLHESKGRAHPQVDPKLLNKLHEYFHEPNKKFF 264
Query: 181 DLVDENFDW 189
+LV FDW
Sbjct: 265 ELVGRTFDW 273
>pdb|3BD9|A Chain A, Human 3-O-Sulfotransferase Isoform 5 With Bound Pap
Length = 280
Score = 160 bits (404), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/192 (43%), Positives = 117/192 (60%), Gaps = 19/192 (9%)
Query: 1 MNASIRLLVIVRDPVTRAISDYTQLKIHAAATSPGPVKRFEQLALRENG-EINENYRPIA 59
MN+SI+LL+IVR+P TRAISDYTQ+ + +FE+LA+ N E+N Y+ +
Sbjct: 106 MNSSIKLLIIVREPTTRAISDYTQV-LEGKERKNKTYYKFEKLAIDPNTCEVNTKYKAVR 164
Query: 60 VSMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFLN 119
S+Y + WL + FP EQ +V+GDRLI +P+PELQ +E+FLN
Sbjct: 165 TSIYTKHLERWL----------------KYFPIEQFHVVDGDRLITEPLPELQLVEKFLN 208
Query: 120 LEPHINHDNFYFNHTKGFYCLKDNSM-ERCLRESKGRKHVRVHPKVISKMRQYFNFHNQL 178
L P I+ N YFN T+GFYCL+ N + +CL SKGR H V P VI+K+R++F+ NQ
Sbjct: 209 LPPRISQYNLYFNATRGFYCLRFNEIFNKCLAGSKGRIHPEVDPSVITKLRKFFHPFNQK 268
Query: 179 FYDLVDENFDWP 190
FY + +WP
Sbjct: 269 FYQITGRTLNWP 280
>pdb|1T8T|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
pdb|1T8T|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap
Length = 271
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 104/195 (53%), Gaps = 28/195 (14%)
Query: 1 MNASIRLLVIVRDPVTRAISDYTQLKIHAAATSPGP-VKRFEQLAL--RENGEINENYRP 57
M+ +L+V+VRDPVTRAISDYTQ S P + FE L R G I+ ++
Sbjct: 97 MSKDTKLIVVVRDPVTRAISDYTQ------TLSKRPDIPTFESLTFKNRTAGLIDTSWSA 150
Query: 58 IAVSMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERF 117
I + +Y + WL + FP Q+L V+G+RLI DP EL R++ F
Sbjct: 151 IQIGIYAKHLEHWL----------------RHFPIRQMLFVSGERLISDPAGELGRVQDF 194
Query: 118 LNLEPHINHDNFYFNHTKGFYCLK---DNSMERCLRESKGRKHVRVHPKVISKMRQYFNF 174
L L+ I +FYFN TKGF CLK +S CL ++KGR H + +V+ ++R+++
Sbjct: 195 LGLKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRP 254
Query: 175 HNQLFYDLVDENFDW 189
N FY + +F W
Sbjct: 255 FNLKFYQMTGHDFGW 269
>pdb|1T8U|A Chain A, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
pdb|1T8U|B Chain B, Crystal Structure Of Human 3-O-Sulfotransferase-3 With
Bound Pap And Tetrasaccharide Substrate
Length = 272
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 104/195 (53%), Gaps = 28/195 (14%)
Query: 1 MNASIRLLVIVRDPVTRAISDYTQLKIHAAATSPGP-VKRFEQLAL--RENGEINENYRP 57
M+ +L+V+VRDPVTRAISDYTQ S P + FE L R G I+ ++
Sbjct: 98 MSKDTKLIVVVRDPVTRAISDYTQ------TLSKRPDIPTFESLTFKNRTAGLIDTSWSA 151
Query: 58 IAVSMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERF 117
I + +Y + WL + FP Q+L V+G+RLI DP EL R++ F
Sbjct: 152 IQIGIYAKHLEHWL----------------RHFPIRQMLFVSGERLISDPAGELGRVQDF 195
Query: 118 LNLEPHINHDNFYFNHTKGFYCLK---DNSMERCLRESKGRKHVRVHPKVISKMRQYFNF 174
L L+ I +FYFN TKGF CLK +S CL ++KGR H + +V+ ++R+++
Sbjct: 196 LGLKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRP 255
Query: 175 HNQLFYDLVDENFDW 189
N FY + +F W
Sbjct: 256 FNLKFYQMTGHDFGW 270
>pdb|1NST|A Chain A, The Sulfotransferase Domain Of Human Haparin Sulfate N-
DeacetylaseN-Sulfotransferase
Length = 325
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 94 QILIVNGDRLIEDPVPELQRIERFLNLEPHIN-HDNFYFNHTKGFYC-LKDNSMERCLRE 151
QIL+++G L +P + +++FL + I+ H F+ KGF+C L + +CL +
Sbjct: 215 QILVLDGKLLRTEPAKVMDMVQKFLGVTNTIDYHKTLAFDPKKGFWCQLLEGGKTKCLGK 274
Query: 152 SKGRKHVRVHPKVISKMRQYFNFHN 176
SKGRK+ + + ++ Y+ HN
Sbjct: 275 SKGRKYPEMDLDSRAFLKDYYRDHN 299
>pdb|2ECE|A Chain A, X-Ray Structure Of Hypothetical Selenium-Binding Protein
From Sulfolobus Tokodaii, St0059
Length = 462
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 179 FYDLVDENFDWPEESGSALVKINVNTEQGGLTLDEDFIVDLGLEPNGPALAHEIR 233
Y D F +PE +VK+N N GGL +D++F VD G A +H++R
Sbjct: 401 LYSTWDNQF-YPEGLKGWMVKLNANP-SGGLEIDKEFFVDF-----GEARSHQVR 448
>pdb|3RNL|A Chain A, Crystal Structure Of Sulfotransferase From
Alicyclobacillus Acidocaldarius
Length = 311
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 6 RLLVIVRDPVTRAISDYTQLKIHAAATSPGPVKRFEQLALRENGEINENYRPIAVSMYHN 65
++L+ +R+PV RA S Y L T F + +E I ++Y P+
Sbjct: 111 KILIXLRNPVDRAFSAYXHLVRDERET-----LSFRESLAKEEERIRQHYEPL------- 158
Query: 66 FMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFLNL 120
W + VG+ + + VF +EQ+ ++ + DPV ++ FL +
Sbjct: 159 ----WYYRA-VGLYAAQVKRYLDVFGREQVKVILFEEFARDPVQVVRDCCAFLGV 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,435,321
Number of Sequences: 62578
Number of extensions: 318670
Number of successful extensions: 725
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 705
Number of HSP's gapped (non-prelim): 9
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)