RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10675
(233 letters)
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif,
CO-FACT PAPS/PAP, heparan sulfate oligosaccharides,
golgi-localized transferase; HET: A3P NGY BDP SGN IDS;
1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Length = 269
Score = 136 bits (342), Expect = 2e-39
Identities = 84/189 (44%), Positives = 111/189 (58%), Gaps = 18/189 (9%)
Query: 1 MNASIRLLVIVRDPVTRAISDYTQLKIHAAATSPGPVKRFEQLALRENGEINENYRPIAV 60
MN +IRLL+I+RDP R +SDYTQ+ + L +G +N +Y+ +
Sbjct: 98 MNPTIRLLLILRDPSERVLSDYTQV--LYNHLQKHKPYPPIEDLLMRDGRLNLDYKALNR 155
Query: 61 SMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFLNL 120
S+YH M WL FP I IV+GDRLI DP PE+Q++ERFL L
Sbjct: 156 SLYHAHMLNWLRF----------------FPLGHIHIVDGDRLIRDPFPEIQKVERFLKL 199
Query: 121 EPHINHDNFYFNHTKGFYCLKDNSMERCLRESKGRKHVRVHPKVISKMRQYFNFHNQLFY 180
P IN NFYFN TKGFYCL+D+ +RCL ESKGR H +V PK++ K+ +YF+ N+ F+
Sbjct: 200 SPQINASNFYFNKTKGFYCLRDSGKDRCLHESKGRAHPQVDPKLLDKLHEYFHEPNKKFF 259
Query: 181 DLVDENFDW 189
LV FDW
Sbjct: 260 KLVGRTFDW 268
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate
biosynthesis, substrate specificity, glycoprotein, golgi
apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Length = 280
Score = 131 bits (330), Expect = 2e-37
Identities = 79/191 (41%), Positives = 110/191 (57%), Gaps = 17/191 (8%)
Query: 1 MNASIRLLVIVRDPVTRAISDYTQLKIHAAATSPGPVKRFEQLALRENGEINENYRPIAV 60
MN+SI+LL+IVR+P TRAISDYTQ+ + K + E+N Y+ +
Sbjct: 106 MNSSIKLLIIVREPTTRAISDYTQVLEGKERKNKTYYKFEKLAIDPNTCEVNTKYKAVRT 165
Query: 61 SMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFLNL 120
S+Y + WL + FP EQ +V+GDRLI +P+PELQ +E+FLNL
Sbjct: 166 SIYTKHLERWL----------------KYFPIEQFHVVDGDRLITEPLPELQLVEKFLNL 209
Query: 121 EPHINHDNFYFNHTKGFYCLK-DNSMERCLRESKGRKHVRVHPKVISKMRQYFNFHNQLF 179
P I+ N YFN T+GFYCL+ + +CL SKGR H V P VI+K+R++F+ NQ F
Sbjct: 210 PPRISQYNLYFNATRGFYCLRFNEIFNKCLAGSKGRIHPEVDPSVITKLRKFFHPFNQKF 269
Query: 180 YDLVDENFDWP 190
Y + +WP
Sbjct: 270 YQITGRTLNWP 280
>1t8t_A Heparan sulfate D-glucosaminyl 3-O- sulfotransferase 3A1;
alpha-beta motif, substrate-binding cleft; HET: A3P CIT;
1.85A {Homo sapiens} SCOP: c.37.1.5 PDB: 1t8u_A*
Length = 271
Score = 124 bits (312), Expect = 6e-35
Identities = 69/194 (35%), Positives = 99/194 (51%), Gaps = 26/194 (13%)
Query: 1 MNASIRLLVIVRDPVTRAISDYTQLKIHAAATSPGPVKRFEQLAL--RENGEINENYRPI 58
M+ +L+V+VRDPVTRAISDYTQ + FE L R G I+ ++ I
Sbjct: 97 MSKDTKLIVVVRDPVTRAISDYTQTLSKR-----PDIPTFESLTFKNRTAGLIDTSWSAI 151
Query: 59 AVSMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFL 118
+ +Y + WL FP Q+L V+G+RLI DP EL R++ FL
Sbjct: 152 QIGIYAKHLEHWLRH----------------FPIRQMLFVSGERLISDPAGELGRVQDFL 195
Query: 119 NLEPHINHDNFYFNHTKGFYCLKDNSME---RCLRESKGRKHVRVHPKVISKMRQYFNFH 175
L+ I +FYFN TKGF CLK CL ++KGR H + +V+ ++R+++
Sbjct: 196 GLKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRPF 255
Query: 176 NQLFYDLVDENFDW 189
N FY + +F W
Sbjct: 256 NLKFYQMTGHDFGW 269
>1nst_A NST1, heparan sulfate N-deacetylase/N-sulfotransferase; PAP,
haparin sulfate, haparin sulfate biosynthesis,
glycoprotein; HET: A3P; 2.30A {Homo sapiens} SCOP:
c.37.1.5
Length = 325
Score = 109 bits (273), Expect = 9e-29
Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 20/193 (10%)
Query: 1 MNASIRLLVIVRDPVTRAISDYTQLKIHAAATSPGPVKRFEQLALRE--NGEINENYRPI 58
+ ++L I+ +P RA S Y + H + A + + R +
Sbjct: 136 LLPKAKVLTILINPADRAYSWYQHQRAHDDPVALKYTFHEVITAGSDASSKLRALQNRCL 195
Query: 59 AVSMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFL 118
Y + WL + QIL+++G L +P + +++FL
Sbjct: 196 VPGWYATHIERWL----------------SAYHANQILVLDGKLLRTEPAKVMDMVQKFL 239
Query: 119 NLEPHIN-HDNFYFNHTKGFYC-LKDNSMERCLRESKGRKHVRVHPKVISKMRQYFNFHN 176
+ I+ H F+ KGF+C L + +CL +SKGRK+ + + ++ Y+ HN
Sbjct: 240 GVTNTIDYHKTLAFDPKKGFWCQLLEGGKTKCLGKSKGRKYPEMDLDSRAFLKDYYRDHN 299
Query: 177 QLFYDLVDENFDW 189
L+ +
Sbjct: 300 IELSKLLYKMGQT 312
>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, alpha-beta-alpha sandwich;
HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}
Length = 311
Score = 90.3 bits (223), Expect = 1e-21
Identities = 31/220 (14%), Positives = 68/220 (30%), Gaps = 41/220 (18%)
Query: 1 MNASIRLLVIVRDPVTRAISDYTQLKIHAAATSPGPVKRFEQLALRENGEINENYRPIAV 60
++L+++R+PV RA S Y L + + + + R + AV
Sbjct: 106 AYPDAKILIMLRNPVDRAFSAYMHL-VRDERETLSFRESLAKEEERIRQHYEPLWYYRAV 164
Query: 61 SMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFLNL 120
+Y + +L+V F +EQ+ ++ + DPV ++ FL +
Sbjct: 165 GLYAAQVKRYLDV----------------FGREQVKVILFEEFARDPVQVVRDCCAFLGV 208
Query: 121 EPHINHDNFYFNHTKGFYCLKD-----------------------NSMERCLRESKGRKH 157
D ++ G + +S
Sbjct: 209 STDFVPDTSIRHNESGVPKSRSLYNFIAKPNALKEIVKPFIPAAVRERLGNRAKSMVLGR 268
Query: 158 VRVHPKVISKMRQYFNFHNQLFYDLVDENF-DWPEESGSA 196
+ + P + ++ +F L+ + W + +A
Sbjct: 269 MEMEPDLREELTAFFAPDVARLEALIHRDLSAWRRPARAA 308
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller,
structural genomics, unknown function; 2.00A {Sulfolobus
tokodaii}
Length = 462
Score = 43.3 bits (101), Expect = 4e-05
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 179 FYDLVDENFDWPEESGSALVKINVNTEQGGLTLDEDFIVDLGLEPNGPALAHEIR 233
Y D F +PE +VK+N N GGL +D++F VD G A +H++R
Sbjct: 401 LYSTWDNQF-YPEGLKGWMVKLNANPS-GGLEIDKEFFVDF-----GEARSHQVR 448
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.001
Identities = 39/246 (15%), Positives = 69/246 (28%), Gaps = 67/246 (27%)
Query: 9 VIVRDPVTRAISDYTQLKIHAAATSPGPV----------KRFEQLALRENGEINENYRPI 58
V + V+R + Y +L+ P K + +AL +
Sbjct: 125 VFAKYNVSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VAL-------DVCLSY 174
Query: 59 AVSMYHNFMYAWLEVSRV----GVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRI 114
V +F WL + V ++ YQ+ P + + +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 115 ERFLNLEPHINHDNFYFNHTKGFYCLKDNSMERCLRESKGRKHVRVHPKVISKMRQYFNF 174
R L +P+ N CL L +V+ + K FN
Sbjct: 235 RRLLKSKPYEN-------------CLLV------LL------NVQ-NAKAW----NAFNL 264
Query: 175 HNQLFYDLV----DENFDWPEESGSALVKINVNTEQGGLTLDED---FIVDLGLEPNG-P 226
++ L+ + D S + I+++ LT DE + L P P
Sbjct: 265 SCKI---LLTTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 227 ALAHEI 232
Sbjct: 320 REVLTT 325
Score = 33.3 bits (75), Expect = 0.069
Identities = 48/313 (15%), Positives = 83/313 (26%), Gaps = 133/313 (42%)
Query: 1 MNASIRLLVIVRDP-VTRAISDYTQLKIHAAATSPGPVKRFEQLAL-------------R 46
N S ++L+ R VT +S T I S E +L R
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPR 320
Query: 47 ENGEINENYRPIAVSM----YHNFMYAWLEVSRVGVTKVR-----------PA---THYQ 88
E N P +S+ + + W V K+ PA +
Sbjct: 321 EVLTTN----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 89 ---VFPK-----EQIL-IVNGDRLIEDP---VPELQR---IER------------FLNLE 121
VFP +L ++ D + D V +L + +E+ +L L+
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 122 PHIN-----H-----------------------DNFYFNHTKGFYCLKDNSMERCLRESK 153
+ H D ++++H G
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-GH---------------- 479
Query: 154 GRKHVRVHPKVISKMRQYFNFHNQLFYDLVDENFDWPEESGSALVKINVNTEQGGLTLD- 212
H K I + + +F D F + E + + G L+
Sbjct: 480 -------HLKNI-EHPERMTLFRMVFLD-----FRFLE---QKIRHDSTAWNASGSILNT 523
Query: 213 -------EDFIVD 218
+ +I D
Sbjct: 524 LQQLKFYKPYICD 536
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.011
Identities = 27/157 (17%), Positives = 39/157 (24%), Gaps = 54/157 (34%)
Query: 12 RDPVTRAI-----SDYTQLK-IHA-AATSPGPVKRFEQLALRENGEINENY--------R 56
D V + Y + IHA AA L + E+ +NY R
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQE----NDTTLVKTKELIKNYITARIMAKR 135
Query: 57 PIAVSMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRI-- 114
P N A G ++ +F G +D EL+ +
Sbjct: 136 PF--DKKSN--SALFRAVGEGNAQL-----VAIF--------GGQGNTDDYFEELRDLYQ 178
Query: 115 --------------ERFLNLEPHINHDNFYFNHTKGF 137
E L F T+G
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVF--TQGL 213
>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold,
transferase; HET: A3P; 1.90A {Homo sapiens} PDB: 3ap2_A*
3ap3_A*
Length = 337
Score = 30.2 bits (68), Expect = 0.49
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 86 HYQVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEPHINHDNFY 130
KE+ L V ++L+ P L+ I FL + +
Sbjct: 202 QCMEVGKEKCLPVYYEQLVLHPRRSLKLILDFLGIAWSDAVLHHE 246
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.51
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 7/28 (25%)
Query: 23 TQLKIHAAATSPGPVKRFEQLALRENGE 50
LK++A ++P LA++ E
Sbjct: 27 ASLKLYADDSAPA-------LAIKATME 47
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain,
structural genomics, PSI- protein structure initiative;
NMR {Escherichia coli} PDB: 2kky_A
Length = 102
Score = 25.7 bits (56), Expect = 7.4
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 124 INHDNFYFNHTKGFYCLKDN 143
+ H+ ++ T+G + +K N
Sbjct: 83 VKHEECIYDDTRGNFIIKGN 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.417
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,762,768
Number of extensions: 226325
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 23
Length of query: 233
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 143
Effective length of database: 4,188,903
Effective search space: 599013129
Effective search space used: 599013129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)