RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10675
         (233 letters)



>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score =  110 bits (275), Expect = 4e-30
 Identities = 83/189 (43%), Positives = 112/189 (59%), Gaps = 18/189 (9%)

Query: 1   MNASIRLLVIVRDPVTRAISDYTQLKIHAAATSPGPVKRFEQLALRENGEINENYRPIAV 60
           MN +IRLL+I+RDP  R +SDYTQ+  +             +  L  +G +N +Y+ +  
Sbjct: 87  MNPTIRLLLILRDPSERVLSDYTQVLYNH--LQKHKPYPPIEDLLMRDGRLNLDYKALNR 144

Query: 61  SMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFLNL 120
           S+YH  M  W                 + FP   I IV+GDRLI DP PE+Q++ERFL L
Sbjct: 145 SLYHAHMLNW----------------LRFFPLGHIHIVDGDRLIRDPFPEIQKVERFLKL 188

Query: 121 EPHINHDNFYFNHTKGFYCLKDNSMERCLRESKGRKHVRVHPKVISKMRQYFNFHNQLFY 180
            P IN  NFYFN TKGFYCL+D+  +RCL ESKGR H +V PK++ K+ +YF+  N+ F+
Sbjct: 189 SPQINASNFYFNKTKGFYCLRDSGKDRCLHESKGRAHPQVDPKLLDKLHEYFHEPNKKFF 248

Query: 181 DLVDENFDW 189
            LV   FDW
Sbjct: 249 KLVGRTFDW 257


>d1t8ta_ c.37.1.5 (A:) Heparan sulfate glucosamine
           3-O-sulfotransferase 3 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 271

 Score = 94.6 bits (234), Expect = 5e-24
 Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 26/194 (13%)

Query: 1   MNASIRLLVIVRDPVTRAISDYTQLKIHAAATSPGPVKRFEQLALRE--NGEINENYRPI 58
           M+   +L+V+VRDPVTRAISDYTQ            +  FE L  +    G I+ ++  I
Sbjct: 97  MSKDTKLIVVVRDPVTRAISDYTQTLSK-----RPDIPTFESLTFKNRTAGLIDTSWSAI 151

Query: 59  AVSMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFL 118
            + +Y   +  W                 + FP  Q+L V+G+RLI DP  EL R++ FL
Sbjct: 152 QIGIYAKHLEHW----------------LRHFPIRQMLFVSGERLISDPAGELGRVQDFL 195

Query: 119 NLEPHINHDNFYFNHTKGFYCLKD---NSMERCLRESKGRKHVRVHPKVISKMRQYFNFH 175
            L+  I   +FYFN TKGF CLK    +S   CL ++KGR H  +  +V+ ++R+++   
Sbjct: 196 GLKRIITDKHFYFNKTKGFPCLKKAEGSSRPHCLGKTKGRTHPEIDREVVRRLREFYRPF 255

Query: 176 NQLFYDLVDENFDW 189
           N  FY +   +F W
Sbjct: 256 NLKFYQMTGHDFGW 269


>d1nsta_ c.37.1.5 (A:) Heparan sulfate
           N-deacetylase/N-sulfotransferase domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 301

 Score = 88.5 bits (218), Expect = 2e-21
 Identities = 37/190 (19%), Positives = 72/190 (37%), Gaps = 20/190 (10%)

Query: 1   MNASIRLLVIVRDPVTRAISDYTQLKIHAAATSPGPVKRFEQLALRENGEINENYRPIAV 60
           +    ++L I+ +P  RA S Y   + H    +          A  +        +   +
Sbjct: 115 LLPKAKVLTILINPADRAYSWYQHQRAHDDPVALKYTFHEVITAGSDASSKLRALQNRCL 174

Query: 61  --SMYHNFMYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFL 118
               Y   +  W                   +   QIL+++G  L  +P   +  +++FL
Sbjct: 175 VPGWYATHIERW----------------LSAYHANQILVLDGKLLRTEPAKVMDMVQKFL 218

Query: 119 NLEPHIN-HDNFYFNHTKGFYCLK-DNSMERCLRESKGRKHVRVHPKVISKMRQYFNFHN 176
            +   I+ H    F+  KGF+C   +    +CL +SKGRK+  +     + ++ Y+  HN
Sbjct: 219 GVTNTIDYHKTLAFDPKKGFWCQLLEGGKTKCLGKSKGRKYPEMDLDSRAFLKDYYRDHN 278

Query: 177 QLFYDLVDEN 186
                L+ + 
Sbjct: 279 IELSKLLYKM 288


>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium
           smegmatis [TaxId: 1772]}
          Length = 265

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 11/116 (9%), Positives = 30/116 (25%), Gaps = 21/116 (18%)

Query: 7   LLVIVRDPVTRAISDYTQLKIHAAATSPGPVKRFEQLALRENGEINENYRPIAVSMYHNF 66
           + +   D V++A+S +  ++           +           E +       ++M    
Sbjct: 137 IHIHRPDVVSQAVSFWRAVQTRV-------WRGRPDPVRDARAEYHAGAIAHVITMLRAQ 189

Query: 67  MYAWLEVSRVGVTKVRPATHYQVFPKEQILIVNGDRLIEDPVPELQRIERFLNLEP 122
              W                       + + V+   L  +    +  +   L  +P
Sbjct: 190 EEGWRAWFTE--------------ENVEPIDVDYPYLWRNLTEVVGTVLEALGQDP 231


>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 570

 Score = 27.4 bits (60), Expect = 2.0
 Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 2/64 (3%)

Query: 129 FYFNHTKGFYCLKDNSMERCLRESKGRKHVRVHPKVISKMRQYFNFHNQLFYDLVDENFD 188
           F   H         ++   C      R      P++ S        HN+L  +L   N  
Sbjct: 205 FDNLHDDPCLLTNRSARIPCFLAGDTR--SSEMPELTSMHTLLLREHNRLATELKSLNPR 262

Query: 189 WPEE 192
           W  E
Sbjct: 263 WDGE 266


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 921,162
Number of extensions: 44143
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 10
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)