Query psy10677
Match_columns 317
No_of_seqs 345 out of 2793
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 15:50:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0339|consensus 100.0 2.4E-42 5.1E-47 320.7 14.1 219 79-314 165-394 (731)
2 KOG0331|consensus 100.0 1.9E-42 4.2E-47 329.5 13.9 195 106-316 32-265 (519)
3 KOG0341|consensus 100.0 6.4E-41 1.4E-45 302.7 8.3 222 69-315 111-351 (610)
4 PTZ00110 helicase; Provisional 100.0 3.1E-39 6.7E-44 318.8 18.3 216 84-315 75-302 (545)
5 KOG0334|consensus 100.0 8.8E-40 1.9E-44 326.0 11.2 200 100-315 329-540 (997)
6 KOG0330|consensus 100.0 4.5E-39 9.8E-44 290.9 11.5 164 132-316 58-230 (476)
7 KOG0333|consensus 100.0 8.4E-39 1.8E-43 298.2 9.1 194 106-315 216-421 (673)
8 PLN00206 DEAD-box ATP-dependen 100.0 4.1E-37 8.9E-42 302.5 17.8 203 97-315 83-295 (518)
9 KOG0336|consensus 100.0 8.3E-38 1.8E-42 284.2 9.7 204 96-317 174-394 (629)
10 KOG0348|consensus 100.0 6.4E-37 1.4E-41 286.2 11.1 172 129-316 130-313 (708)
11 COG0513 SrmB Superfamily II DN 100.0 2.2E-36 4.8E-41 296.2 13.5 163 135-316 29-200 (513)
12 KOG0338|consensus 100.0 1.5E-36 3.2E-41 282.4 9.9 164 134-315 180-352 (691)
13 KOG0335|consensus 100.0 4.8E-36 1E-40 281.7 13.1 190 111-315 48-252 (482)
14 KOG0343|consensus 100.0 6.4E-36 1.4E-40 280.3 9.3 180 110-312 49-237 (758)
15 KOG0345|consensus 100.0 2E-35 4.2E-40 272.8 11.9 165 135-315 4-182 (567)
16 KOG0342|consensus 100.0 5E-35 1.1E-39 271.5 11.0 167 133-316 80-256 (543)
17 KOG0340|consensus 100.0 6.2E-34 1.3E-38 255.0 7.9 159 133-312 5-175 (442)
18 KOG0346|consensus 100.0 1.1E-33 2.3E-38 259.5 8.8 164 135-314 19-194 (569)
19 KOG0347|consensus 100.0 9.6E-34 2.1E-38 265.7 8.4 167 133-315 179-365 (731)
20 PRK04837 ATP-dependent RNA hel 100.0 8.3E-33 1.8E-37 266.2 14.3 166 133-314 6-181 (423)
21 PRK04537 ATP-dependent RNA hel 100.0 1.4E-31 3E-36 265.5 14.5 166 133-314 7-183 (572)
22 PRK10590 ATP-dependent RNA hel 100.0 4.3E-31 9.3E-36 256.4 13.9 163 136-314 2-173 (456)
23 PRK11776 ATP-dependent RNA hel 100.0 5E-31 1.1E-35 256.4 13.3 160 135-315 4-172 (460)
24 PRK11192 ATP-dependent RNA hel 100.0 1.3E-30 2.9E-35 251.6 14.2 162 135-313 1-170 (434)
25 KOG0328|consensus 100.0 6.8E-32 1.5E-36 235.6 4.4 165 129-314 21-193 (400)
26 KOG0326|consensus 100.0 8.2E-32 1.8E-36 238.5 4.8 156 135-311 85-248 (459)
27 PRK11634 ATP-dependent RNA hel 100.0 2E-30 4.3E-35 259.1 13.7 161 133-314 4-173 (629)
28 PRK01297 ATP-dependent RNA hel 100.0 1.5E-29 3.2E-34 247.0 14.7 165 134-314 86-261 (475)
29 KOG0337|consensus 100.0 4.3E-29 9.4E-34 228.2 7.2 161 135-315 21-189 (529)
30 KOG0327|consensus 99.9 9.2E-29 2E-33 224.3 5.1 165 130-315 21-194 (397)
31 KOG0350|consensus 99.9 3.9E-28 8.4E-33 226.0 8.2 152 135-303 127-309 (620)
32 PTZ00424 helicase 45; Provisio 99.9 7.8E-27 1.7E-31 223.0 13.2 159 133-312 26-192 (401)
33 KOG0344|consensus 99.9 3.8E-27 8.3E-32 223.5 6.6 183 113-311 110-310 (593)
34 KOG4284|consensus 99.9 1.1E-26 2.4E-31 221.7 4.6 165 127-311 17-189 (980)
35 KOG0332|consensus 99.9 9.2E-26 2E-30 203.8 8.0 162 132-311 87-254 (477)
36 cd00268 DEADc DEAD-box helicas 99.9 8.9E-25 1.9E-29 189.6 13.8 157 137-312 1-165 (203)
37 KOG0329|consensus 99.9 8.1E-26 1.8E-30 195.2 6.8 171 125-315 32-211 (387)
38 TIGR03817 DECH_helic helicase/ 99.9 4.2E-25 9.2E-30 224.7 12.3 141 141-303 20-171 (742)
39 PRK12899 secA preprotein trans 99.9 5.1E-23 1.1E-27 207.2 12.2 146 138-303 65-229 (970)
40 PRK02362 ski2-like helicase; P 99.9 3E-23 6.5E-28 212.3 10.0 149 136-309 2-156 (737)
41 PRK00254 ski2-like helicase; P 99.9 1.8E-22 3.9E-27 206.1 11.0 150 136-309 2-157 (720)
42 PRK13767 ATP-dependent helicas 99.9 2.2E-22 4.8E-27 208.5 10.0 146 142-303 18-186 (876)
43 PRK09401 reverse gyrase; Revie 99.9 2.5E-21 5.4E-26 204.0 12.3 129 168-310 82-232 (1176)
44 TIGR01054 rgy reverse gyrase. 99.8 2.6E-21 5.6E-26 204.1 11.6 144 145-311 66-231 (1171)
45 COG1201 Lhr Lhr-like helicases 99.8 4.2E-21 9E-26 192.9 10.0 146 142-303 8-163 (814)
46 PF00270 DEAD: DEAD/DEAH box h 99.8 1.1E-20 2.3E-25 158.7 10.6 129 168-309 1-138 (169)
47 PRK01172 ski2-like helicase; P 99.8 6.9E-21 1.5E-25 193.4 10.8 147 136-308 2-153 (674)
48 PRK14701 reverse gyrase; Provi 99.8 6.1E-21 1.3E-25 205.3 10.1 146 144-313 66-234 (1638)
49 TIGR02621 cas3_GSU0051 CRISPR- 99.8 5.9E-20 1.3E-24 185.5 9.7 135 153-316 12-195 (844)
50 TIGR00643 recG ATP-dependent D 99.8 6.6E-20 1.4E-24 184.4 8.9 130 147-300 226-368 (630)
51 KOG0328|consensus 99.8 1.9E-20 4E-25 164.2 4.2 117 1-130 205-367 (400)
52 PRK10917 ATP-dependent DNA hel 99.8 6.7E-20 1.5E-24 185.7 8.6 122 166-301 261-395 (681)
53 PLN03137 ATP-dependent DNA hel 99.8 3.3E-19 7.2E-24 183.1 13.2 147 136-313 436-606 (1195)
54 TIGR00614 recQ_fam ATP-depende 99.8 2.1E-19 4.5E-24 175.3 9.9 127 153-310 7-149 (470)
55 KOG0331|consensus 99.8 2.9E-20 6.2E-25 178.0 1.2 144 1-158 276-468 (519)
56 TIGR00580 mfd transcription-re 99.8 9.5E-19 2.1E-23 180.7 8.5 135 143-301 437-585 (926)
57 KOG0349|consensus 99.8 7.5E-19 1.6E-23 161.9 6.7 87 223-310 286-383 (725)
58 KOG0336|consensus 99.8 3.7E-19 7.9E-24 162.9 3.8 144 1-158 403-592 (629)
59 TIGR00963 secA preprotein tran 99.8 5.6E-18 1.2E-22 168.9 12.4 120 168-303 58-190 (745)
60 PRK11057 ATP-dependent DNA hel 99.7 2.8E-18 6.1E-23 172.0 9.5 139 142-311 9-162 (607)
61 PRK12898 secA preprotein trans 99.7 6.2E-18 1.3E-22 167.5 10.1 119 168-302 105-255 (656)
62 PRK09200 preprotein translocas 99.7 6.5E-18 1.4E-22 170.6 10.0 120 168-303 80-213 (790)
63 PRK10689 transcription-repair 99.7 4.1E-18 8.8E-23 179.5 8.6 129 149-301 593-734 (1147)
64 PRK13104 secA preprotein trans 99.7 1.8E-17 4E-22 167.4 12.1 120 168-303 84-216 (896)
65 COG1205 Distinct helicase fami 99.7 1.6E-17 3.5E-22 170.5 10.1 137 142-299 55-205 (851)
66 COG0513 SrmB Superfamily II DN 99.7 3.4E-18 7.4E-23 168.0 4.5 118 1-130 210-374 (513)
67 TIGR01389 recQ ATP-dependent D 99.7 2.5E-17 5.4E-22 165.1 9.3 131 150-311 5-150 (591)
68 KOG0330|consensus 99.7 4.5E-18 9.8E-23 155.0 3.6 117 1-130 240-401 (476)
69 KOG0335|consensus 99.7 9E-18 2E-22 158.6 4.5 143 1-158 267-464 (482)
70 KOG0333|consensus 99.7 9E-18 2E-22 157.9 3.8 117 1-130 457-618 (673)
71 PRK09751 putative ATP-dependen 99.7 1.4E-16 3.1E-21 169.5 11.3 112 192-303 1-138 (1490)
72 TIGR03714 secA2 accessory Sec 99.7 2.7E-16 5.8E-21 157.7 11.0 120 168-303 72-209 (762)
73 KOG0341|consensus 99.7 6.1E-18 1.3E-22 154.1 -2.5 175 1-215 362-586 (610)
74 KOG0326|consensus 99.6 3.7E-17 8E-22 145.7 1.2 123 1-139 263-430 (459)
75 KOG0332|consensus 99.6 1.7E-16 3.6E-21 144.1 3.7 140 1-152 269-454 (477)
76 KOG0344|consensus 99.6 1.5E-16 3.2E-21 151.8 1.4 160 1-175 326-532 (593)
77 KOG0327|consensus 99.6 6.5E-16 1.4E-20 140.9 4.7 117 1-130 205-364 (397)
78 COG1204 Superfamily II helicas 99.6 2.7E-15 5.9E-20 152.4 8.9 141 140-303 14-160 (766)
79 PRK12904 preprotein translocas 99.6 5.9E-15 1.3E-19 149.1 10.3 120 168-303 83-215 (830)
80 PHA02558 uvsW UvsW helicase; P 99.6 1.1E-14 2.4E-19 143.2 11.5 164 111-303 66-236 (501)
81 PHA02653 RNA helicase NPH-II; 99.5 7.6E-15 1.7E-19 147.3 7.2 128 168-306 166-307 (675)
82 KOG0342|consensus 99.5 5.2E-15 1.1E-19 138.6 5.4 118 1-130 266-431 (543)
83 KOG0952|consensus 99.5 1.2E-14 2.5E-19 146.3 7.4 134 164-303 108-252 (1230)
84 PRK05580 primosome assembly pr 99.5 3.5E-14 7.5E-19 143.9 8.8 117 165-300 143-269 (679)
85 KOG0338|consensus 99.5 6.9E-15 1.5E-19 138.3 3.0 117 1-130 363-527 (691)
86 smart00487 DEXDc DEAD-like hel 99.5 2.9E-13 6.3E-18 115.0 12.4 124 168-303 10-143 (201)
87 KOG0345|consensus 99.5 1.9E-14 4E-19 134.3 4.7 118 1-130 193-358 (567)
88 PRK13107 preprotein translocas 99.5 1E-13 2.2E-18 140.3 9.9 120 168-303 84-216 (908)
89 KOG0339|consensus 99.5 3.2E-14 7E-19 133.7 4.7 143 1-158 406-595 (731)
90 KOG0334|consensus 99.5 2.4E-14 5.1E-19 144.6 4.0 151 1-175 551-748 (997)
91 KOG0346|consensus 99.4 1.1E-13 2.4E-18 128.3 6.3 118 1-130 206-404 (569)
92 PRK11664 ATP-dependent RNA hel 99.4 1.3E-13 2.7E-18 141.7 6.8 112 175-303 14-131 (812)
93 PTZ00110 helicase; Provisional 99.4 5.4E-14 1.2E-18 139.4 3.8 144 1-158 313-504 (545)
94 PRK13766 Hef nuclease; Provisi 99.4 9.3E-13 2E-17 136.2 11.9 122 168-303 17-145 (773)
95 PLN00206 DEAD-box ATP-dependen 99.4 7.1E-14 1.5E-18 138.0 3.5 143 1-158 305-495 (518)
96 TIGR03158 cas3_cyano CRISPR-as 99.4 5E-13 1.1E-17 126.0 9.1 116 170-302 1-158 (357)
97 KOG0343|consensus 99.4 1.3E-13 2.9E-18 130.8 4.3 168 1-187 251-466 (758)
98 TIGR01587 cas3_core CRISPR-ass 99.4 6.2E-13 1.3E-17 125.4 8.0 106 185-303 1-138 (358)
99 TIGR01970 DEAH_box_HrpB ATP-de 99.4 8.6E-13 1.9E-17 135.4 9.5 112 175-303 11-128 (819)
100 PRK11634 ATP-dependent RNA hel 99.3 9.2E-13 2E-17 132.3 5.5 117 1-130 185-346 (629)
101 KOG0340|consensus 99.3 4.8E-13 1E-17 121.1 3.0 117 1-130 189-355 (442)
102 PRK11776 ATP-dependent RNA hel 99.3 1.3E-12 2.8E-17 127.4 4.9 115 1-129 183-342 (460)
103 COG1200 RecG RecG-like helicas 99.3 2.8E-12 6E-17 125.6 7.0 125 166-300 262-395 (677)
104 cd00046 DEXDc DEAD-like helica 99.3 7.3E-11 1.6E-15 94.4 12.0 105 192-303 5-117 (144)
105 PRK04837 ATP-dependent RNA hel 99.3 2E-12 4.3E-17 124.7 3.1 117 1-130 195-356 (423)
106 COG1111 MPH1 ERCC4-like helica 99.3 2.2E-11 4.7E-16 115.3 9.5 120 168-301 17-143 (542)
107 PRK10590 ATP-dependent RNA hel 99.2 2.5E-12 5.4E-17 125.2 2.8 117 1-130 185-346 (456)
108 PRK04537 ATP-dependent RNA hel 99.2 5.5E-12 1.2E-16 125.8 3.3 117 1-130 197-358 (572)
109 COG1202 Superfamily II helicas 99.2 2E-11 4.4E-16 116.8 5.9 146 136-303 195-352 (830)
110 COG0514 RecQ Superfamily II DN 99.2 1E-10 2.2E-15 114.6 9.4 125 168-314 19-157 (590)
111 KOG0951|consensus 99.1 1.2E-10 2.6E-15 119.4 8.6 140 155-301 299-449 (1674)
112 PRK11192 ATP-dependent RNA hel 99.1 5E-11 1.1E-15 115.4 5.5 116 1-129 183-345 (434)
113 KOG0329|consensus 99.1 7.8E-12 1.7E-16 108.9 -0.5 115 1-130 222-349 (387)
114 KOG4284|consensus 99.1 5E-11 1.1E-15 115.3 4.9 117 1-130 204-373 (980)
115 KOG0348|consensus 99.1 6.2E-11 1.3E-15 112.6 4.0 118 1-130 336-548 (708)
116 KOG0354|consensus 99.1 3.4E-10 7.4E-15 112.6 8.2 119 167-300 63-190 (746)
117 TIGR01407 dinG_rel DnaQ family 99.1 3.7E-10 7.9E-15 117.8 8.9 95 144-262 233-334 (850)
118 TIGR00595 priA primosomal prot 99.1 3.3E-10 7.1E-15 111.3 8.1 97 192-301 2-105 (505)
119 PRK07246 bifunctional ATP-depe 99.0 7.1E-10 1.5E-14 114.7 8.8 81 168-262 247-331 (820)
120 PRK01297 ATP-dependent RNA hel 99.0 2.9E-10 6.3E-15 111.3 5.5 117 1-130 275-436 (475)
121 PRK13103 secA preprotein trans 99.0 1.7E-09 3.7E-14 110.1 9.6 119 168-302 84-215 (913)
122 COG1110 Reverse gyrase [DNA re 99.0 3.5E-09 7.6E-14 107.4 10.7 131 168-312 84-236 (1187)
123 TIGR03117 cas_csf4 CRISPR-asso 98.9 2.2E-09 4.8E-14 107.1 8.8 72 182-263 15-89 (636)
124 PRK12906 secA preprotein trans 98.9 3.3E-09 7.1E-14 107.5 8.3 119 168-302 82-213 (796)
125 PRK12326 preprotein translocas 98.9 5.3E-09 1.1E-13 104.3 9.2 120 168-303 80-212 (764)
126 KOG0337|consensus 98.8 2.2E-09 4.7E-14 99.6 4.5 115 1-128 200-360 (529)
127 PRK11131 ATP-dependent RNA hel 98.8 5E-09 1.1E-13 111.0 5.3 108 182-310 88-207 (1294)
128 PF04851 ResIII: Type III rest 98.8 6.6E-09 1.4E-13 87.7 4.5 123 166-303 3-160 (184)
129 PTZ00424 helicase 45; Provisio 98.7 6.2E-09 1.4E-13 99.5 3.8 115 1-128 206-366 (401)
130 KOG0350|consensus 98.7 4.8E-09 1E-13 99.2 2.9 118 1-130 365-534 (620)
131 CHL00122 secA preprotein trans 98.7 3.2E-08 7E-13 100.5 8.5 119 168-302 78-209 (870)
132 KOG0352|consensus 98.7 2.4E-08 5.2E-13 93.0 6.0 116 168-303 22-155 (641)
133 PRK11448 hsdR type I restricti 98.7 2E-08 4.3E-13 106.6 6.0 126 166-301 413-552 (1123)
134 TIGR00603 rad25 DNA repair hel 98.7 5.4E-08 1.2E-12 98.4 8.2 117 167-301 256-387 (732)
135 KOG0951|consensus 98.6 9E-08 2E-12 98.9 9.2 134 153-300 1130-1264(1674)
136 smart00488 DEXDc2 DEAD-like he 98.6 1.3E-07 2.9E-12 86.6 8.3 73 167-247 9-85 (289)
137 smart00489 DEXDc3 DEAD-like he 98.6 1.3E-07 2.9E-12 86.6 8.3 73 167-247 9-85 (289)
138 PRK12902 secA preprotein trans 98.6 1.6E-07 3.4E-12 95.6 9.0 119 168-302 87-218 (939)
139 PF07517 SecA_DEAD: SecA DEAD- 98.6 3.4E-07 7.4E-12 82.4 10.1 119 168-302 79-210 (266)
140 COG1061 SSL2 DNA or RNA helica 98.6 7.4E-08 1.6E-12 93.4 6.1 115 167-303 37-160 (442)
141 KOG0353|consensus 98.6 7.8E-08 1.7E-12 88.4 5.5 132 138-299 74-225 (695)
142 KOG0351|consensus 98.6 4E-08 8.6E-13 101.7 3.9 118 165-303 263-399 (941)
143 COG1197 Mfd Transcription-repa 98.6 1.7E-07 3.8E-12 97.2 8.3 121 167-299 595-726 (1139)
144 PRK09694 helicase Cas3; Provis 98.5 5.3E-07 1.2E-11 93.5 10.2 83 168-262 288-372 (878)
145 TIGR02621 cas3_GSU0051 CRISPR- 98.5 1E-07 2.2E-12 97.6 4.5 110 1-127 210-381 (844)
146 TIGR03817 DECH_helic helicase/ 98.5 1.2E-07 2.6E-12 97.4 4.6 58 59-128 309-378 (742)
147 PRK09401 reverse gyrase; Revie 98.5 9.5E-08 2.1E-12 102.0 3.7 109 1-121 273-429 (1176)
148 PHA02653 RNA helicase NPH-II; 98.5 1.9E-07 4E-12 94.5 5.5 117 1-128 326-506 (675)
149 COG4581 Superfamily II RNA hel 98.3 3.1E-07 6.7E-12 95.1 3.8 117 167-301 120-241 (1041)
150 PRK08074 bifunctional ATP-depe 98.3 1.4E-06 2.9E-11 91.9 8.4 84 167-262 258-347 (928)
151 TIGR01054 rgy reverse gyrase. 98.3 3.7E-07 8.1E-12 97.6 3.9 92 1-104 271-411 (1171)
152 PRK12898 secA preprotein trans 98.3 2.9E-07 6.3E-12 92.1 2.5 120 2-130 414-580 (656)
153 TIGR01967 DEAH_box_HrpA ATP-de 98.3 1.1E-06 2.3E-11 93.8 5.9 127 168-310 66-200 (1283)
154 TIGR00348 hsdR type I site-spe 98.1 3.8E-06 8.3E-11 85.6 6.0 120 168-303 240-379 (667)
155 PRK10689 transcription-repair 98.1 3E-06 6.6E-11 90.5 5.2 114 1-128 753-911 (1147)
156 COG1198 PriA Primosomal protei 98.1 4.1E-06 8.8E-11 84.9 5.6 113 166-297 198-321 (730)
157 PRK12903 secA preprotein trans 98.0 1.9E-05 4.2E-10 80.5 8.4 119 168-302 80-211 (925)
158 PRK14701 reverse gyrase; Provi 98.0 4.7E-06 1E-10 91.5 3.8 92 1-102 274-412 (1638)
159 TIGR00614 recQ_fam ATP-depende 97.9 1.2E-05 2.6E-10 78.8 5.3 113 1-129 167-326 (470)
160 PRK11747 dinG ATP-dependent DN 97.9 2.5E-05 5.5E-10 80.0 7.7 82 168-260 27-118 (697)
161 PLN03137 ATP-dependent DNA hel 97.9 1.1E-05 2.3E-10 84.7 5.0 59 59-129 710-780 (1195)
162 KOG0347|consensus 97.9 6.2E-07 1.3E-11 86.1 -4.2 107 10-129 411-563 (731)
163 KOG0349|consensus 97.9 4.5E-06 9.8E-11 78.2 1.2 117 1-130 405-609 (725)
164 PRK11057 ATP-dependent DNA hel 97.8 2.5E-05 5.4E-10 78.9 6.1 58 59-128 266-335 (607)
165 TIGR00580 mfd transcription-re 97.8 1.5E-05 3.2E-10 83.5 4.6 113 1-127 604-761 (926)
166 TIGR01587 cas3_core CRISPR-ass 97.8 1.3E-05 2.8E-10 75.6 3.6 52 59-125 254-321 (358)
167 COG4098 comFA Superfamily II D 97.8 5.4E-05 1.2E-09 69.3 7.1 115 166-300 97-213 (441)
168 TIGR01970 DEAH_box_HrpB ATP-de 97.8 3.9E-05 8.4E-10 79.6 6.5 113 1-127 151-327 (819)
169 COG1199 DinG Rad3-related DNA 97.8 4E-05 8.6E-10 78.2 6.2 68 168-246 17-86 (654)
170 PRK12900 secA preprotein trans 97.7 6.4E-05 1.4E-09 77.8 6.4 119 168-302 140-271 (1025)
171 PF00176 SNF2_N: SNF2 family N 97.7 7.4E-05 1.6E-09 68.1 6.1 112 182-301 24-146 (299)
172 KOG0947|consensus 97.7 4.9E-05 1.1E-09 77.5 4.7 114 166-301 297-415 (1248)
173 TIGR00604 rad3 DNA repair heli 97.6 0.00014 3.1E-09 74.7 7.9 74 165-247 9-84 (705)
174 KOG0952|consensus 97.6 5.3E-05 1.2E-09 77.9 3.9 122 166-298 927-1055(1230)
175 PRK11664 ATP-dependent RNA hel 97.6 6.9E-05 1.5E-09 77.8 4.6 89 1-102 154-294 (812)
176 PF13245 AAA_19: Part of AAA d 97.5 0.00029 6.3E-09 51.2 6.3 48 192-243 15-62 (76)
177 TIGR01389 recQ ATP-dependent D 97.5 8.3E-05 1.8E-09 75.0 4.4 54 59-124 254-319 (591)
178 PRK12901 secA preprotein trans 97.5 0.00019 4E-09 74.6 6.4 119 168-302 171-303 (1112)
179 PF13086 AAA_11: AAA domain; P 97.4 0.00025 5.5E-09 61.8 5.2 73 166-245 1-75 (236)
180 KOG0948|consensus 97.3 0.00026 5.6E-09 70.7 4.7 116 166-303 129-249 (1041)
181 KOG0949|consensus 97.1 0.00065 1.4E-08 69.8 5.1 122 166-299 511-642 (1330)
182 PF14617 CMS1: U3-containing 9 97.1 0.00054 1.2E-08 61.2 4.0 72 221-293 124-200 (252)
183 COG1203 CRISPR-associated heli 97.1 0.0014 2.9E-08 67.8 7.5 78 168-253 197-276 (733)
184 PF07652 Flavi_DEAD: Flaviviru 97.1 0.00085 1.8E-08 54.6 4.6 93 192-300 9-106 (148)
185 PRK10917 ATP-dependent DNA hel 97.0 0.00076 1.6E-08 69.1 5.1 38 59-102 511-560 (681)
186 TIGR03158 cas3_cyano CRISPR-as 97.0 0.001 2.2E-08 62.9 4.9 25 59-83 304-334 (357)
187 PRK04914 ATP-dependent helicas 96.9 0.0036 7.7E-08 66.0 9.1 121 168-302 154-285 (956)
188 PLN03142 Probable chromatin-re 96.9 0.0025 5.4E-08 67.5 7.9 126 166-303 169-305 (1033)
189 PF00580 UvrD-helicase: UvrD/R 96.9 0.0022 4.8E-08 58.6 6.5 102 167-283 1-102 (315)
190 PRK14873 primosome assembly pr 96.9 0.0035 7.5E-08 63.8 8.4 92 193-296 166-264 (665)
191 COG4096 HsdR Type I site-speci 96.8 0.0026 5.6E-08 64.6 6.8 118 166-300 165-296 (875)
192 PRK09751 putative ATP-dependen 96.7 0.0018 4E-08 70.7 5.1 53 59-123 307-371 (1490)
193 PRK11131 ATP-dependent RNA hel 96.7 0.0027 5.8E-08 68.4 6.1 86 1-99 223-363 (1294)
194 TIGR00376 DNA helicase, putati 96.7 0.0061 1.3E-07 62.0 8.2 74 166-257 157-231 (637)
195 PF12340 DUF3638: Protein of u 96.6 0.0049 1.1E-07 54.2 5.9 126 136-284 4-144 (229)
196 PF13604 AAA_30: AAA domain; P 96.5 0.0053 1.1E-07 53.0 5.9 64 167-243 2-66 (196)
197 COG4889 Predicted helicase [Ge 96.5 0.0078 1.7E-07 61.6 7.6 107 136-265 141-247 (1518)
198 PRK04914 ATP-dependent helicas 96.5 0.0012 2.6E-08 69.5 1.5 78 38-127 494-594 (956)
199 KOG0390|consensus 96.3 0.019 4.2E-07 58.7 8.8 133 165-303 237-390 (776)
200 COG0556 UvrB Helicase subunit 96.1 0.012 2.6E-07 57.3 6.2 70 168-254 14-88 (663)
201 TIGR00643 recG ATP-dependent D 96.1 0.0076 1.6E-07 61.3 5.0 38 59-102 488-537 (630)
202 KOG1803|consensus 96.0 0.011 2.3E-07 58.3 5.3 68 163-244 182-250 (649)
203 TIGR00631 uvrb excinuclease AB 95.9 0.023 5E-07 57.9 7.5 67 168-249 11-80 (655)
204 KOG0950|consensus 95.8 0.0053 1.1E-07 63.2 2.4 132 149-303 215-355 (1008)
205 PRK09200 preprotein translocas 95.8 0.0072 1.6E-07 62.4 3.4 64 59-130 458-535 (790)
206 COG0653 SecA Preprotein transl 95.8 0.022 4.7E-07 58.6 6.6 119 168-302 82-213 (822)
207 PF09848 DUF2075: Uncharacteri 95.8 0.016 3.4E-07 54.7 5.4 87 192-303 6-97 (352)
208 COG2805 PilT Tfp pilus assembl 95.7 0.01 2.2E-07 54.0 3.7 55 128-216 99-153 (353)
209 PRK14722 flhF flagellar biosyn 95.7 0.028 6.2E-07 53.2 6.7 88 182-281 136-227 (374)
210 KOG1802|consensus 95.7 0.022 4.7E-07 56.8 5.8 77 166-259 410-486 (935)
211 KOG2340|consensus 95.4 0.037 8.1E-07 53.8 6.4 76 166-249 216-319 (698)
212 PF00271 Helicase_C: Helicase 95.2 0.006 1.3E-07 43.9 0.5 51 59-121 13-75 (78)
213 PRK13767 ATP-dependent helicas 95.2 0.0072 1.6E-07 63.7 1.1 52 59-122 320-383 (876)
214 TIGR01967 DEAH_box_HrpA ATP-de 95.1 0.059 1.3E-06 58.5 7.5 62 59-127 312-395 (1283)
215 PRK11054 helD DNA helicase IV; 95.1 0.046 1E-06 56.1 6.3 78 166-255 196-273 (684)
216 PRK10919 ATP-dependent DNA hel 95.0 0.052 1.1E-06 55.7 6.6 70 167-248 3-72 (672)
217 COG0610 Type I site-specific r 94.9 0.085 1.8E-06 56.2 8.1 108 182-303 272-390 (962)
218 TIGR03714 secA2 accessory Sec 94.8 0.012 2.6E-07 60.4 1.4 70 59-139 454-538 (762)
219 PRK05298 excinuclease ABC subu 94.5 0.11 2.3E-06 53.3 7.3 69 166-249 12-83 (652)
220 TIGR00631 uvrb excinuclease AB 94.5 0.017 3.7E-07 58.9 1.4 96 39-153 444-564 (655)
221 TIGR01075 uvrD DNA helicase II 94.3 0.1 2.2E-06 54.0 6.6 71 166-248 4-74 (715)
222 TIGR01074 rep ATP-dependent DN 94.2 0.11 2.4E-06 53.2 6.9 70 167-248 2-71 (664)
223 KOG0385|consensus 94.1 0.28 6.1E-06 50.0 9.0 126 166-303 167-303 (971)
224 COG1643 HrpA HrpA-like helicas 94.1 0.065 1.4E-06 55.8 4.7 105 182-300 64-173 (845)
225 PF02399 Herpes_ori_bp: Origin 94.1 0.098 2.1E-06 53.7 5.9 102 192-304 54-157 (824)
226 PRK11773 uvrD DNA-dependent he 94.0 0.13 2.8E-06 53.3 6.8 70 167-248 10-79 (721)
227 PRK05298 excinuclease ABC subu 94.0 0.023 5E-07 58.0 1.3 82 39-128 448-549 (652)
228 PRK13894 conjugal transfer ATP 93.8 0.065 1.4E-06 49.8 3.8 39 168-212 134-172 (319)
229 TIGR03499 FlhF flagellar biosy 93.8 0.12 2.6E-06 47.2 5.5 25 3-27 8-32 (282)
230 PRK15483 type III restriction- 93.6 0.16 3.4E-06 53.6 6.5 53 182-244 58-110 (986)
231 PF02562 PhoH: PhoH-like prote 93.4 0.075 1.6E-06 46.2 3.3 56 167-234 5-60 (205)
232 TIGR02785 addA_Gpos recombinat 93.3 0.23 4.9E-06 54.6 7.5 105 167-287 2-107 (1232)
233 PRK14721 flhF flagellar biosyn 93.0 0.26 5.7E-06 47.5 6.6 90 182-282 190-282 (420)
234 PRK10875 recD exonuclease V su 93.0 0.27 5.9E-06 49.8 7.0 67 168-246 154-222 (615)
235 COG0514 RecQ Superfamily II DN 93.0 0.12 2.6E-06 51.7 4.3 111 2-122 172-323 (590)
236 KOG1123|consensus 92.9 0.071 1.5E-06 51.7 2.5 135 136-298 283-431 (776)
237 PRK13833 conjugal transfer pro 92.9 0.13 2.9E-06 47.8 4.3 40 168-213 130-169 (323)
238 cd01124 KaiC KaiC is a circadi 92.8 0.53 1.1E-05 39.5 7.6 47 192-247 4-50 (187)
239 PRK05703 flhF flagellar biosyn 92.7 0.45 9.8E-06 46.1 7.9 85 182-280 220-310 (424)
240 TIGR00963 secA preprotein tran 92.6 0.063 1.4E-06 55.0 1.9 66 59-130 435-511 (745)
241 COG1419 FlhF Flagellar GTP-bin 92.4 0.45 9.7E-06 45.4 7.1 87 182-280 202-292 (407)
242 TIGR02782 TrbB_P P-type conjug 92.4 0.2 4.4E-06 46.1 4.8 41 168-214 118-158 (299)
243 PRK10536 hypothetical protein; 92.4 0.25 5.5E-06 44.4 5.2 41 168-214 61-101 (262)
244 TIGR01447 recD exodeoxyribonuc 92.3 0.32 7E-06 49.1 6.4 68 168-246 147-216 (586)
245 TIGR02525 plasmid_TraJ plasmid 92.2 0.11 2.4E-06 49.3 3.0 25 185-214 151-175 (372)
246 TIGR01547 phage_term_2 phage t 92.2 0.22 4.7E-06 47.7 5.0 57 192-253 6-63 (396)
247 PRK12906 secA preprotein trans 92.2 0.082 1.8E-06 54.6 2.1 71 59-139 470-554 (796)
248 TIGR01073 pcrA ATP-dependent D 92.2 0.33 7.3E-06 50.3 6.7 71 166-248 4-74 (726)
249 PRK12723 flagellar biosynthesi 92.1 0.42 9.2E-06 45.7 6.7 90 182-282 173-267 (388)
250 PRK11889 flhF flagellar biosyn 91.9 0.42 9.1E-06 45.8 6.3 85 183-282 241-333 (436)
251 PRK06995 flhF flagellar biosyn 91.8 0.54 1.2E-05 46.2 7.2 90 182-282 255-347 (484)
252 PRK12900 secA preprotein trans 91.7 0.097 2.1E-06 55.0 2.0 92 59-158 628-735 (1025)
253 TIGR02524 dot_icm_DotB Dot/Icm 91.6 0.11 2.4E-06 49.1 2.2 27 182-213 133-159 (358)
254 PHA02558 uvsW UvsW helicase; P 91.3 0.069 1.5E-06 52.9 0.5 55 59-125 374-441 (501)
255 COG3973 Superfamily I DNA and 91.2 0.62 1.4E-05 46.5 6.8 74 170-249 213-286 (747)
256 KOG4150|consensus 91.0 0.086 1.9E-06 51.9 0.8 66 164-241 284-349 (1034)
257 TIGR01448 recD_rel helicase, p 91.0 0.41 8.9E-06 49.6 5.8 63 167-241 324-386 (720)
258 PF01695 IstB_IS21: IstB-like 91.0 0.32 6.9E-06 41.3 4.2 47 182-241 46-92 (178)
259 PRK13889 conjugal transfer rel 90.9 0.42 9.2E-06 50.9 5.9 61 166-240 346-407 (988)
260 PRK12727 flagellar biosynthesi 90.9 0.54 1.2E-05 46.6 6.2 87 182-281 349-440 (559)
261 cd01120 RecA-like_NTPases RecA 90.8 1.7 3.7E-05 34.9 8.4 13 192-204 4-16 (165)
262 cd01126 TraG_VirD4 The TraG/Tr 90.8 0.15 3.2E-06 48.7 2.2 45 192-246 4-48 (384)
263 COG1484 DnaC DNA replication p 90.7 0.49 1.1E-05 42.5 5.3 65 168-245 85-154 (254)
264 PF12846 AAA_10: AAA-like doma 90.6 0.7 1.5E-05 41.7 6.4 42 184-237 2-43 (304)
265 PF02534 T4SS-DNA_transf: Type 90.6 0.17 3.7E-06 49.5 2.4 49 185-247 46-94 (469)
266 PRK13897 type IV secretion sys 90.4 0.2 4.3E-06 50.6 2.7 49 184-246 159-207 (606)
267 KOG0389|consensus 90.4 0.71 1.5E-05 47.3 6.5 108 182-303 417-538 (941)
268 KOG0384|consensus 90.0 0.98 2.1E-05 48.4 7.4 167 105-302 321-510 (1373)
269 PF00448 SRP54: SRP54-type pro 89.9 0.72 1.6E-05 39.7 5.6 80 192-281 6-95 (196)
270 PRK13851 type IV secretion sys 89.9 0.22 4.9E-06 46.8 2.5 26 182-212 161-186 (344)
271 KOG0920|consensus 89.7 0.78 1.7E-05 48.2 6.4 114 171-298 178-296 (924)
272 TIGR02768 TraA_Ti Ti-type conj 89.7 0.64 1.4E-05 48.4 5.9 62 166-241 352-414 (744)
273 PRK14723 flhF flagellar biosyn 89.1 0.74 1.6E-05 47.6 5.7 82 192-281 190-275 (767)
274 COG1474 CDC6 Cdc6-related prot 89.0 0.69 1.5E-05 43.9 5.2 26 175-204 34-59 (366)
275 TIGR00603 rad25 DNA repair hel 89.0 0.23 5.1E-06 51.0 2.1 88 59-157 521-628 (732)
276 PRK13764 ATPase; Provisional 88.9 0.45 9.8E-06 48.0 4.0 28 182-214 256-283 (602)
277 COG1200 RecG RecG-like helicas 88.7 0.19 4.2E-06 50.5 1.2 50 59-120 513-574 (677)
278 smart00490 HELICc helicase sup 88.7 0.17 3.8E-06 35.8 0.7 38 59-102 17-66 (82)
279 cd01127 TrwB Bacterial conjuga 88.5 0.47 1E-05 45.7 3.7 51 175-239 36-86 (410)
280 PRK13850 type IV secretion sys 88.4 0.33 7.1E-06 49.7 2.7 49 183-245 139-187 (670)
281 PRK13766 Hef nuclease; Provisi 88.4 0.24 5.1E-06 51.7 1.7 73 38-122 366-466 (773)
282 PF10412 TrwB_AAD_bind: Type I 88.2 0.79 1.7E-05 43.8 5.0 48 182-241 14-61 (386)
283 PRK12726 flagellar biosynthesi 88.1 1.1 2.4E-05 42.8 5.7 85 182-281 205-297 (407)
284 cd01130 VirB11-like_ATPase Typ 88.0 0.27 5.8E-06 41.8 1.5 32 168-204 11-42 (186)
285 COG1219 ClpX ATP-dependent pro 87.9 0.24 5.3E-06 45.6 1.3 19 182-204 96-114 (408)
286 TIGR03877 thermo_KaiC_1 KaiC d 87.9 0.87 1.9E-05 40.3 4.8 53 182-247 20-72 (237)
287 KOG0391|consensus 87.8 2 4.4E-05 46.1 7.8 111 192-313 639-758 (1958)
288 cd01122 GP4d_helicase GP4d_hel 87.6 1.5 3.3E-05 39.3 6.3 56 176-245 25-80 (271)
289 PRK12377 putative replication 87.5 1.2 2.6E-05 39.9 5.5 47 183-242 101-147 (248)
290 PRK13900 type IV secretion sys 87.5 0.48 1E-05 44.4 3.0 28 182-214 159-186 (332)
291 KOG0387|consensus 87.5 1.2 2.6E-05 45.7 5.9 132 154-302 195-350 (923)
292 PF04665 Pox_A32: Poxvirus A32 87.3 0.63 1.4E-05 41.4 3.5 26 184-214 14-39 (241)
293 cd01129 PulE-GspE PulE/GspE Th 87.3 0.43 9.4E-06 43.1 2.5 38 171-213 68-105 (264)
294 PF00437 T2SE: Type II/IV secr 87.2 0.53 1.2E-05 42.4 3.1 29 182-215 126-154 (270)
295 TIGR01425 SRP54_euk signal rec 87.1 2.4 5.1E-05 41.1 7.5 79 192-282 105-195 (429)
296 PRK10867 signal recognition pa 87.1 2.3 4.9E-05 41.3 7.4 81 192-282 105-196 (433)
297 KOG4439|consensus 87.0 2.3 5E-05 43.2 7.4 109 166-280 325-441 (901)
298 PRK08769 DNA polymerase III su 87.0 8.9 0.00019 35.7 11.0 140 166-310 4-189 (319)
299 smart00382 AAA ATPases associa 86.7 0.37 7.9E-06 37.4 1.5 18 183-204 2-19 (148)
300 KOG0060|consensus 86.4 0.35 7.6E-06 47.9 1.5 18 182-203 460-477 (659)
301 TIGR02533 type_II_gspE general 86.1 0.28 6.1E-06 48.3 0.7 37 171-213 230-267 (486)
302 PRK13876 conjugal transfer cou 85.8 0.59 1.3E-05 47.8 2.8 49 183-245 144-192 (663)
303 COG3587 Restriction endonuclea 85.8 0.96 2.1E-05 46.8 4.2 48 192-245 79-126 (985)
304 TIGR02562 cas3_yersinia CRISPR 85.8 1.5 3.2E-05 46.8 5.7 85 168-262 410-500 (1110)
305 PRK08181 transposase; Validate 85.6 1.4 3E-05 40.0 4.8 47 182-241 105-151 (269)
306 TIGR00064 ftsY signal recognit 85.5 4.7 0.0001 36.6 8.3 80 192-282 77-167 (272)
307 PF05970 PIF1: PIF1-like helic 85.5 1.3 2.8E-05 42.0 4.8 69 167-247 2-76 (364)
308 COG1111 MPH1 ERCC4-like helica 85.3 0.35 7.6E-06 47.0 0.9 35 61-101 407-453 (542)
309 PRK10436 hypothetical protein; 85.3 0.56 1.2E-05 45.9 2.3 39 171-214 206-244 (462)
310 PRK06526 transposase; Provisio 85.2 1.4 3E-05 39.6 4.7 46 182-240 97-142 (254)
311 COG4962 CpaF Flp pilus assembl 85.1 0.76 1.7E-05 42.9 2.9 57 168-239 159-216 (355)
312 PRK08533 flagellar accessory p 85.1 1.6 3.5E-05 38.5 4.9 53 182-247 23-75 (230)
313 TIGR02767 TraG-Ti Ti-type conj 84.8 0.72 1.6E-05 46.8 2.8 50 184-247 212-261 (623)
314 TIGR02538 type_IV_pilB type IV 84.7 0.6 1.3E-05 47.0 2.3 39 170-213 303-341 (564)
315 PRK13822 conjugal transfer cou 84.6 0.67 1.5E-05 47.3 2.5 50 183-246 224-273 (641)
316 PRK00771 signal recognition pa 84.4 2.7 5.8E-05 40.9 6.5 80 192-282 100-188 (437)
317 PF13555 AAA_29: P-loop contai 84.3 0.54 1.2E-05 32.6 1.2 19 182-204 22-40 (62)
318 KOG0742|consensus 84.3 0.83 1.8E-05 43.6 2.8 104 136-303 353-457 (630)
319 KOG1805|consensus 84.2 1.5 3.2E-05 46.0 4.8 119 167-303 670-810 (1100)
320 cd01131 PilT Pilus retraction 84.2 1.4 3E-05 37.9 4.1 21 192-213 6-26 (198)
321 COG2804 PulE Type II secretory 84.1 0.8 1.7E-05 44.8 2.7 42 168-215 243-285 (500)
322 COG0630 VirB11 Type IV secreto 84.0 0.65 1.4E-05 43.1 2.0 39 168-213 129-168 (312)
323 TIGR00959 ffh signal recogniti 83.9 4 8.6E-05 39.6 7.4 80 192-281 104-194 (428)
324 PRK02362 ski2-like helicase; P 83.8 0.63 1.4E-05 48.4 2.1 58 59-124 309-383 (737)
325 PRK13880 conjugal transfer cou 83.8 0.73 1.6E-05 47.0 2.4 46 183-242 175-220 (636)
326 PRK10416 signal recognition pa 83.4 5.6 0.00012 37.0 8.0 19 182-204 113-131 (318)
327 KOG0953|consensus 83.1 1.4 3E-05 43.6 3.8 53 192-260 196-248 (700)
328 PRK06835 DNA replication prote 83.0 2.3 5.1E-05 39.7 5.3 47 182-241 182-228 (329)
329 KOG1132|consensus 82.9 2.6 5.6E-05 43.9 5.8 78 168-249 23-136 (945)
330 TIGR03743 SXT_TraD conjugative 82.8 2.9 6.3E-05 42.7 6.3 56 182-249 175-232 (634)
331 KOG1533|consensus 82.7 1 2.2E-05 39.9 2.5 23 192-215 7-29 (290)
332 PRK14712 conjugal transfer nic 82.6 2.3 5E-05 47.6 5.7 63 166-240 835-901 (1623)
333 PRK06921 hypothetical protein; 82.4 3.2 7E-05 37.5 5.9 50 182-243 116-165 (266)
334 PRK04328 hypothetical protein; 82.1 2.3 5E-05 38.0 4.8 53 182-247 22-74 (249)
335 cd00079 HELICc Helicase superf 81.8 0.47 1E-05 36.9 0.1 57 40-102 31-107 (131)
336 TIGR03754 conj_TOL_TraD conjug 81.7 4.7 0.0001 41.1 7.2 54 184-249 181-236 (643)
337 cd03115 SRP The signal recogni 81.7 8.2 0.00018 32.0 7.7 13 192-204 5-17 (173)
338 TIGR02759 TraD_Ftype type IV c 81.6 1.2 2.7E-05 44.7 3.1 28 182-214 175-202 (566)
339 COG0467 RAD55 RecA-superfamily 81.4 2.3 5E-05 38.1 4.5 54 182-248 22-75 (260)
340 PRK11823 DNA repair protein Ra 81.1 6 0.00013 38.6 7.6 92 182-303 79-170 (446)
341 TIGR01420 pilT_fam pilus retra 81.0 2.3 5E-05 39.9 4.5 27 182-213 121-147 (343)
342 PRK14974 cell division protein 80.9 5.8 0.00013 37.2 7.1 80 192-282 145-235 (336)
343 PRK05973 replicative DNA helic 80.8 2.7 5.8E-05 37.4 4.6 63 168-246 52-114 (237)
344 PF05729 NACHT: NACHT domain 80.5 2.5 5.5E-05 34.2 4.2 25 190-215 3-27 (166)
345 PRK09183 transposase/IS protei 80.5 3.8 8.2E-05 36.9 5.6 46 182-240 101-146 (259)
346 KOG1002|consensus 80.4 7.8 0.00017 38.1 7.8 104 166-287 184-294 (791)
347 PF06745 KaiC: KaiC; InterPro 80.3 2.2 4.9E-05 37.2 4.0 54 182-247 18-71 (226)
348 PRK13700 conjugal transfer pro 80.2 1.9 4E-05 44.3 3.8 72 144-238 157-228 (732)
349 PRK06871 DNA polymerase III su 80.2 22 0.00047 33.2 10.6 124 168-296 4-167 (325)
350 PF13481 AAA_25: AAA domain; P 80.2 5.2 0.00011 33.6 6.2 105 182-303 31-155 (193)
351 PF13401 AAA_22: AAA domain; P 80.1 0.92 2E-05 35.5 1.3 23 280-302 78-100 (131)
352 TIGR02760 TraI_TIGR conjugativ 80.0 3 6.4E-05 48.1 5.6 62 166-240 1019-1085(1960)
353 KOG1133|consensus 79.8 1.3 2.7E-05 44.9 2.4 47 165-215 14-62 (821)
354 PRK05707 DNA polymerase III su 79.8 22 0.00047 33.3 10.5 123 168-296 5-166 (328)
355 PF12775 AAA_7: P-loop contain 79.7 0.92 2E-05 41.2 1.3 18 182-203 32-49 (272)
356 COG0210 UvrD Superfamily I DNA 79.4 4.5 9.7E-05 41.4 6.3 72 166-249 2-73 (655)
357 cd00009 AAA The AAA+ (ATPases 78.9 1.2 2.7E-05 34.7 1.7 26 182-212 18-43 (151)
358 TIGR02640 gas_vesic_GvpN gas v 78.8 1.1 2.3E-05 40.5 1.4 25 174-204 14-38 (262)
359 PRK06731 flhF flagellar biosyn 78.8 7.1 0.00015 35.5 6.7 85 182-281 74-166 (270)
360 cd00079 HELICc Helicase superf 78.3 8.8 0.00019 29.5 6.5 52 223-278 28-86 (131)
361 PRK13709 conjugal transfer nic 78.2 4.2 9.2E-05 46.1 6.0 65 166-240 967-1033(1747)
362 COG1074 RecB ATP-dependent exo 78.1 4.2 9.1E-05 44.5 5.9 58 182-246 15-72 (1139)
363 TIGR03881 KaiC_arch_4 KaiC dom 78.0 3.5 7.7E-05 35.9 4.5 52 182-246 19-70 (229)
364 cd00984 DnaB_C DnaB helicase C 77.7 2.8 6.2E-05 36.8 3.8 46 182-238 12-60 (242)
365 PRK00254 ski2-like helicase; P 77.7 1.2 2.6E-05 46.2 1.6 26 59-84 301-338 (720)
366 COG0470 HolB ATPase involved i 77.5 4.9 0.00011 36.8 5.5 22 192-214 29-50 (325)
367 KOG0926|consensus 77.5 4.9 0.00011 41.7 5.7 106 182-300 270-383 (1172)
368 COG0552 FtsY Signal recognitio 77.3 7.4 0.00016 36.3 6.4 80 192-282 144-234 (340)
369 COG1224 TIP49 DNA helicase TIP 77.3 4.2 9.1E-05 38.3 4.8 55 182-241 64-120 (450)
370 TIGR02784 addA_alphas double-s 76.7 7.4 0.00016 42.7 7.4 58 182-248 9-66 (1141)
371 TIGR00708 cobA cob(I)alamin ad 76.7 18 0.00038 30.6 8.1 99 190-310 8-117 (173)
372 KOG0392|consensus 76.2 8.1 0.00018 41.9 7.0 127 167-300 976-1111(1549)
373 PRK08727 hypothetical protein; 76.2 6.6 0.00014 34.6 5.7 51 185-248 43-93 (233)
374 PF06068 TIP49: TIP49 C-termin 76.1 2.7 5.8E-05 39.9 3.2 37 182-230 49-85 (398)
375 PLN02165 adenylate isopentenyl 75.6 2 4.4E-05 40.1 2.4 24 178-205 38-61 (334)
376 PRK07993 DNA polymerase III su 75.6 25 0.00055 32.9 9.7 124 168-296 4-168 (334)
377 TIGR03878 thermo_KaiC_2 KaiC d 75.5 7.8 0.00017 34.8 6.1 18 182-203 35-52 (259)
378 cd01128 rho_factor Transcripti 75.5 8.7 0.00019 34.4 6.3 17 182-202 15-31 (249)
379 PRK08116 hypothetical protein; 75.4 5.9 0.00013 35.8 5.3 47 184-243 115-161 (268)
380 PF07724 AAA_2: AAA domain (Cd 75.3 1.9 4.1E-05 36.3 1.9 16 192-207 8-24 (171)
381 PRK07952 DNA replication prote 75.2 7 0.00015 34.9 5.6 46 184-242 100-145 (244)
382 COG0553 HepA Superfamily II DN 74.7 20 0.00043 37.6 9.8 127 167-303 339-486 (866)
383 TIGR02880 cbbX_cfxQ probable R 74.7 2 4.3E-05 39.3 2.0 19 182-204 57-75 (284)
384 PF13207 AAA_17: AAA domain; P 74.5 1.7 3.7E-05 33.6 1.4 12 192-203 4-15 (121)
385 COG5008 PilU Tfp pilus assembl 74.5 1.6 3.4E-05 39.5 1.3 19 192-211 132-150 (375)
386 PF09439 SRPRB: Signal recogni 74.5 1.7 3.8E-05 36.9 1.5 20 183-206 3-22 (181)
387 TIGR03744 traC_PFL_4706 conjug 74.5 7.5 0.00016 41.4 6.6 40 184-234 476-515 (893)
388 TIGR03819 heli_sec_ATPase heli 74.4 2.3 5E-05 39.9 2.5 32 168-204 164-195 (340)
389 cd01121 Sms Sms (bacterial rad 74.4 15 0.00033 34.9 8.0 91 182-302 81-171 (372)
390 KOG0989|consensus 74.3 1.3 2.9E-05 40.7 0.8 17 192-208 62-78 (346)
391 PF00308 Bac_DnaA: Bacterial d 74.0 6.8 0.00015 34.2 5.2 43 192-241 39-81 (219)
392 KOG0745|consensus 73.9 1.6 3.5E-05 42.0 1.3 26 182-213 225-250 (564)
393 PRK09354 recA recombinase A; P 73.6 10 0.00022 35.8 6.5 43 182-236 59-101 (349)
394 PF01935 DUF87: Domain of unkn 73.2 4.5 9.7E-05 35.3 3.9 41 183-234 23-63 (229)
395 TIGR02788 VirB11 P-type DNA tr 72.9 2 4.3E-05 39.7 1.6 19 182-204 143-161 (308)
396 TIGR00767 rho transcription te 72.8 12 0.00026 36.0 6.8 18 182-203 167-184 (415)
397 cd00561 CobA_CobO_BtuR ATP:cor 72.7 19 0.0004 30.0 7.2 99 190-309 5-114 (159)
398 PHA02533 17 large terminase pr 72.7 11 0.00024 37.8 6.8 69 168-248 61-129 (534)
399 TIGR00763 lon ATP-dependent pr 72.4 5.8 0.00012 41.6 5.0 29 275-303 398-428 (775)
400 PRK05642 DNA replication initi 72.4 9 0.0002 33.8 5.6 45 184-241 46-90 (234)
401 PF05127 Helicase_RecD: Helica 72.3 0.42 9E-06 40.5 -2.8 56 192-254 2-57 (177)
402 TIGR02655 circ_KaiC circadian 72.3 5.7 0.00012 39.2 4.7 54 182-247 20-73 (484)
403 PRK04296 thymidine kinase; Pro 72.2 5.8 0.00013 33.8 4.2 32 192-231 7-38 (190)
404 TIGR02639 ClpA ATP-dependent C 72.2 4.4 9.4E-05 42.2 4.1 70 186-301 487-565 (731)
405 PRK12724 flagellar biosynthesi 72.1 9.1 0.0002 37.0 5.9 15 192-206 228-242 (432)
406 PF13671 AAA_33: AAA domain; P 71.9 2 4.3E-05 34.2 1.2 12 192-203 4-15 (143)
407 KOG0744|consensus 71.9 13 0.00028 34.7 6.5 63 192-258 182-256 (423)
408 PF00004 AAA: ATPase family as 71.7 2.2 4.8E-05 33.2 1.4 13 192-204 3-15 (132)
409 PF13238 AAA_18: AAA domain; P 71.5 2.2 4.8E-05 33.0 1.4 12 192-203 3-14 (129)
410 cd01394 radB RadB. The archaea 71.4 11 0.00024 32.5 5.9 19 182-204 18-36 (218)
411 PRK06090 DNA polymerase III su 71.4 40 0.00087 31.4 9.8 124 168-296 5-168 (319)
412 PF07728 AAA_5: AAA domain (dy 71.3 2.2 4.8E-05 34.0 1.3 12 192-203 4-15 (139)
413 KOG0924|consensus 71.3 11 0.00023 38.6 6.3 114 168-299 348-478 (1042)
414 PTZ00301 uridine kinase; Provi 71.1 5.6 0.00012 34.6 3.9 12 192-203 8-19 (210)
415 PF01580 FtsK_SpoIIIE: FtsK/Sp 71.1 7.3 0.00016 33.3 4.7 27 182-212 37-63 (205)
416 TIGR02746 TraC-F-type type-IV 71.0 9.7 0.00021 39.9 6.4 39 184-234 431-469 (797)
417 KOG1015|consensus 70.8 8.7 0.00019 40.7 5.6 83 166-257 668-765 (1567)
418 TIGR00176 mobB molybdopterin-g 70.6 6.8 0.00015 32.3 4.1 20 190-209 2-23 (155)
419 TIGR02655 circ_KaiC circadian 70.5 6.7 0.00015 38.7 4.8 53 182-247 262-314 (484)
420 PRK13826 Dtr system oriT relax 70.3 9.6 0.00021 41.4 6.1 63 166-241 381-443 (1102)
421 KOG1806|consensus 69.9 5.2 0.00011 42.5 3.8 69 166-246 738-806 (1320)
422 PF03205 MobB: Molybdopterin g 69.8 6.2 0.00014 31.9 3.7 24 190-214 3-26 (140)
423 COG1201 Lhr Lhr-like helicases 69.7 7.2 0.00016 40.8 4.9 38 59-102 284-333 (814)
424 PF05621 TniB: Bacterial TniB 69.7 27 0.00058 32.2 8.1 47 192-243 66-116 (302)
425 TIGR03880 KaiC_arch_3 KaiC dom 69.5 7.2 0.00016 33.9 4.3 53 182-247 15-67 (224)
426 KOG2373|consensus 69.1 0.97 2.1E-05 42.3 -1.3 19 182-204 272-290 (514)
427 TIGR02012 tigrfam_recA protein 68.9 9.7 0.00021 35.5 5.2 27 182-213 54-80 (321)
428 COG1136 SalX ABC-type antimicr 68.7 2.7 5.8E-05 37.1 1.4 17 182-202 30-46 (226)
429 KOG3905|consensus 68.7 5.6 0.00012 37.0 3.4 51 168-229 39-89 (473)
430 PHA00729 NTP-binding motif con 68.7 3.2 6.9E-05 36.6 1.9 53 185-244 19-78 (226)
431 KOG1942|consensus 68.5 4.1 8.9E-05 37.4 2.5 27 182-213 63-89 (456)
432 PF13191 AAA_16: AAA ATPase do 68.5 2.2 4.8E-05 35.4 0.9 28 182-214 23-50 (185)
433 PF03029 ATP_bind_1: Conserved 68.4 6.2 0.00014 35.0 3.7 23 192-215 1-23 (238)
434 TIGR03420 DnaA_homol_Hda DnaA 68.4 3 6.4E-05 36.2 1.6 19 182-204 37-55 (226)
435 COG1202 Superfamily II helicas 68.3 4.6 0.0001 40.3 3.0 78 2-86 378-509 (830)
436 PRK14530 adenylate kinase; Pro 68.2 2.8 6E-05 36.4 1.4 18 182-203 2-19 (215)
437 PRK10078 ribose 1,5-bisphospho 67.7 3.2 6.9E-05 35.1 1.7 18 183-204 2-19 (186)
438 PRK12904 preprotein translocas 67.1 4.7 0.0001 42.3 3.0 28 59-86 460-497 (830)
439 TIGR02881 spore_V_K stage V sp 67.0 3.3 7.2E-05 37.1 1.7 19 182-204 41-59 (261)
440 COG1120 FepC ABC-type cobalami 66.9 2.7 5.9E-05 37.8 1.1 67 182-254 27-93 (258)
441 COG3972 Superfamily I DNA and 66.7 9.8 0.00021 37.4 4.8 68 168-248 164-231 (660)
442 cd01918 HprK_C HprK/P, the bif 66.7 3.8 8.2E-05 33.7 1.8 19 182-204 13-31 (149)
443 CHL00181 cbbX CbbX; Provisiona 66.4 3.7 8E-05 37.6 1.9 20 182-205 58-77 (287)
444 PRK14729 miaA tRNA delta(2)-is 66.3 3.4 7.3E-05 38.1 1.6 12 192-203 9-20 (300)
445 PRK07399 DNA polymerase III su 66.1 47 0.001 30.8 9.2 104 192-296 31-183 (314)
446 PF00005 ABC_tran: ABC transpo 66.0 3.3 7.3E-05 32.7 1.4 19 182-204 10-28 (137)
447 COG4185 Uncharacterized protei 66.0 2.1 4.4E-05 35.8 0.1 16 192-207 7-22 (187)
448 cd00983 recA RecA is a bacter 65.9 11 0.00025 35.1 5.0 27 182-213 54-80 (325)
449 TIGR02237 recomb_radB DNA repa 65.9 12 0.00025 32.1 4.8 22 182-207 11-32 (209)
450 KOG0922|consensus 65.7 6.7 0.00014 39.7 3.6 103 182-300 65-174 (674)
451 COG1126 GlnQ ABC-type polar am 65.5 3.4 7.4E-05 36.3 1.4 17 182-202 27-43 (240)
452 COG0606 Predicted ATPase with 65.3 3.4 7.4E-05 40.3 1.5 27 172-203 188-214 (490)
453 KOG1000|consensus 65.3 23 0.00051 34.9 7.0 121 167-303 199-322 (689)
454 TIGR02688 conserved hypothetic 65.2 3.9 8.6E-05 39.5 1.9 25 176-206 204-228 (449)
455 PRK00131 aroK shikimate kinase 65.1 3.8 8.3E-05 33.6 1.6 19 182-204 3-21 (175)
456 COG1444 Predicted P-loop ATPas 64.7 16 0.00035 37.9 6.2 76 168-253 216-291 (758)
457 PRK08939 primosomal protein Dn 64.2 14 0.00031 34.1 5.4 48 182-242 155-202 (306)
458 TIGR03015 pepcterm_ATPase puta 64.1 3.7 8.1E-05 36.6 1.5 34 168-205 25-61 (269)
459 COG1875 NYN ribonuclease and A 64.1 10 0.00022 36.0 4.2 47 165-215 227-273 (436)
460 TIGR02760 TraI_TIGR conjugativ 63.9 14 0.00031 42.8 6.3 63 166-242 429-493 (1960)
461 PF07088 GvpD: GvpD gas vesicl 63.8 7.1 0.00015 37.4 3.2 107 182-306 9-123 (484)
462 PF01078 Mg_chelatase: Magnesi 63.8 3.9 8.5E-05 35.5 1.4 19 182-204 21-39 (206)
463 PRK00300 gmk guanylate kinase; 63.3 3.9 8.5E-05 34.9 1.4 17 182-202 4-20 (205)
464 PRK14087 dnaA chromosomal repl 63.2 16 0.00035 35.7 5.8 47 185-242 143-189 (450)
465 PRK06067 flagellar accessory p 63.1 11 0.00025 32.9 4.4 53 182-247 24-76 (234)
466 PRK08699 DNA polymerase III su 63.0 38 0.00082 31.6 8.0 124 168-296 3-173 (325)
467 cd00071 GMPK Guanosine monopho 63.0 3.6 7.9E-05 33.1 1.0 11 192-202 4-14 (137)
468 TIGR02236 recomb_radA DNA repa 62.7 10 0.00022 34.9 4.1 12 192-203 100-111 (310)
469 TIGR03238 dnd_assoc_3 dnd syst 62.7 3.7 8E-05 40.3 1.2 33 168-204 12-49 (504)
470 cd00820 PEPCK_HprK Phosphoenol 62.5 5.2 0.00011 30.9 1.8 21 182-206 14-34 (107)
471 KOG0354|consensus 62.5 18 0.00039 37.4 6.0 57 221-278 411-482 (746)
472 KOG0388|consensus 62.5 27 0.00059 36.0 7.1 110 181-303 584-709 (1185)
473 PRK08903 DnaA regulatory inact 62.2 4.3 9.3E-05 35.4 1.5 18 182-203 41-58 (227)
474 PRK08084 DNA replication initi 62.2 4.3 9.3E-05 35.9 1.5 19 182-204 44-62 (235)
475 PLN03025 replication factor C 62.1 5.6 0.00012 36.8 2.3 13 192-204 39-51 (319)
476 PF02456 Adeno_IVa2: Adenoviru 61.8 11 0.00024 34.9 3.9 37 192-234 92-128 (369)
477 PRK05342 clpX ATP-dependent pr 61.6 5 0.00011 38.8 1.9 19 182-204 107-125 (412)
478 KOG4150|consensus 61.6 9 0.00019 38.3 3.6 91 142-266 372-464 (1034)
479 PRK06620 hypothetical protein; 61.6 4.2 9.1E-05 35.5 1.3 18 184-205 45-62 (214)
480 PRK05416 glmZ(sRNA)-inactivati 61.6 42 0.00091 30.7 7.8 13 192-204 11-23 (288)
481 cd00227 CPT Chloramphenicol (C 61.5 5 0.00011 33.5 1.7 18 183-204 2-19 (175)
482 PF14532 Sigma54_activ_2: Sigm 61.2 5.8 0.00013 31.7 2.0 18 182-203 20-37 (138)
483 PRK00149 dnaA chromosomal repl 61.1 20 0.00044 34.9 6.1 47 184-241 149-195 (450)
484 PRK07261 topology modulation p 61.0 4.3 9.4E-05 33.9 1.2 13 192-204 5-17 (171)
485 TIGR01313 therm_gnt_kin carboh 60.7 5.1 0.00011 32.8 1.6 12 192-203 3-14 (163)
486 TIGR02322 phosphon_PhnN phosph 60.3 4.8 0.0001 33.6 1.4 13 192-204 6-18 (179)
487 TIGR02928 orc1/cdc6 family rep 60.2 5.2 0.00011 37.5 1.7 26 183-213 40-65 (365)
488 PF06309 Torsin: Torsin; Inte 60.0 22 0.00047 28.4 4.9 52 192-248 58-114 (127)
489 COG4604 CeuD ABC-type enteroch 60.0 12 0.00027 32.5 3.7 52 182-239 26-77 (252)
490 PHA02244 ATPase-like protein 59.9 5.4 0.00012 37.9 1.7 18 182-203 118-135 (383)
491 PRK10876 recB exonuclease V su 59.9 25 0.00055 38.8 7.0 65 176-247 13-81 (1181)
492 PRK09694 helicase Cas3; Provis 59.8 31 0.00067 36.8 7.4 43 223-266 560-602 (878)
493 COG0378 HypB Ni2+-binding GTPa 59.6 12 0.00025 32.3 3.5 21 192-213 18-38 (202)
494 PRK13104 secA preprotein trans 59.6 4.9 0.00011 42.4 1.5 26 59-86 474-511 (896)
495 PRK08118 topology modulation p 59.5 4.7 0.0001 33.6 1.1 11 192-202 6-16 (167)
496 TIGR03263 guanyl_kin guanylate 59.4 4.9 0.00011 33.5 1.3 11 192-202 6-16 (180)
497 smart00763 AAA_PrkA PrkA AAA d 59.3 13 0.00028 35.2 4.1 12 192-203 83-94 (361)
498 COG1197 Mfd Transcription-repa 59.0 7.3 0.00016 42.0 2.7 49 59-119 835-895 (1139)
499 TIGR00382 clpX endopeptidase C 58.9 5.6 0.00012 38.4 1.7 19 182-204 115-133 (413)
500 PRK11331 5-methylcytosine-spec 58.3 5.8 0.00013 38.7 1.7 29 170-204 183-211 (459)
No 1
>KOG0339|consensus
Probab=100.00 E-value=2.4e-42 Score=320.67 Aligned_cols=219 Identities=23% Similarity=0.361 Sum_probs=201.9
Q ss_pred cccCCcCCCCCCcccccCCCC---CCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCC
Q psy10677 79 VSFSLPFRDDKTSVVTVPSYP---DPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTT 155 (317)
Q Consensus 79 rg~~~~lr~~~~d~~~v~nf~---~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~ 155 (317)
|-+| +++..++....+++|. .++..+++.+++.++-.++...++.+.|...|+|+++|+++++++.|..++++..|
T Consensus 165 r~id-pl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey 243 (731)
T KOG0339|consen 165 RQID-PLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEY 243 (731)
T ss_pred ccCC-CCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhc
Confidence 4454 4555666666666665 56667799999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHH
Q psy10677 156 NNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTREL 235 (317)
Q Consensus 156 ~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreL 235 (317)
+.| ||||.+++|..+ +|+||+ .+|.||||||.||+.|++.|++.++.+..+++|.+||+||||||
T Consensus 244 ~kp---------tpiq~qalptal--sgrdvi----gIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrel 308 (731)
T KOG0339|consen 244 EKP---------TPIQCQALPTAL--SGRDVI----GIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTREL 308 (731)
T ss_pred ccC---------Cccccccccccc--ccccch----heeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHH
Confidence 999 999999999999 999999 99999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCC
Q psy10677 236 AQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGL 307 (317)
Q Consensus 236 a~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf 307 (317)
|.||+.++++|++.+|++++++|||.+..+|.+.++. |||||||||+++++.+ .+.|+++||||+|+| |||
T Consensus 309 a~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfd-mGf 387 (731)
T KOG0339|consen 309 ASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFD-MGF 387 (731)
T ss_pred HHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhc-ccc
Confidence 9999999999999999999999999999999999987 8999999999999987 455788999999999 999
Q ss_pred cHHHHhh
Q psy10677 308 TEETCVN 314 (317)
Q Consensus 308 ~~~~~~~ 314 (317)
+++.+-+
T Consensus 388 e~qVrSI 394 (731)
T KOG0339|consen 388 EPQVRSI 394 (731)
T ss_pred HHHHHHH
Confidence 9998754
No 2
>KOG0331|consensus
Probab=100.00 E-value=1.9e-42 Score=329.51 Aligned_cols=195 Identities=32% Similarity=0.542 Sum_probs=175.2
Q ss_pred cCCCCHHHHHHHHHHCCceeecCC-CCCCcccccCCCCChhhhc-----------------------------ccCcCCC
Q psy10677 106 LQGKTKEEIDSFRKEHNITLIGQN-IPKPVKTLDETNIPSYILG-----------------------------PMKPKTT 155 (317)
Q Consensus 106 i~~~~~~~i~~~~~~~~i~~~g~~-~~~~~~~f~~~~l~~~l~~-----------------------------~l~~~g~ 155 (317)
.......+.+.+++.+.+++.|.+ +|.|..+|++.+++..... +|+..||
T Consensus 32 ~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ls~~~~~~lk~~g~ 111 (519)
T KOG0331|consen 32 VKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQELGLSEELMKALKEQGF 111 (519)
T ss_pred cccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhcccccHHHHHHHHhcCC
Confidence 556667788889999999998876 8988888776655555444 4558999
Q ss_pred CCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc-CCCCCCCCCceEEEEcCcHH
Q psy10677 156 NNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK-MPKLEEGDGPIALVLAPTRE 234 (317)
Q Consensus 156 ~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~-~~~~~~~~~~~alil~Ptre 234 (317)
+.| ||||+++||.++ +|+|++ ++|.|||||||||+||++.|+.. +....++.+|++|||+||||
T Consensus 112 ~~P---------tpIQaq~wp~~l--~GrD~v----~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRE 176 (519)
T KOG0331|consen 112 EKP---------TPIQAQGWPIAL--SGRDLV----GIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRE 176 (519)
T ss_pred CCC---------chhhhcccceec--cCCceE----EEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHH
Confidence 999 999999999999 999999 99999999999999999999998 66777788999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcCC-----CCCCCCchhHHHhhhcC
Q psy10677 235 LAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQND-----AHSPCLSVWRRLQDILG 306 (317)
Q Consensus 235 La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~~-----~~~~~lde~d~l~~~~g 306 (317)
||.||++++.++++..+++++|+|||.++..|...+++ |+|||||||.|+++.+. +.+++|||||+||| ||
T Consensus 177 LA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMld-mG 255 (519)
T KOG0331|consen 177 LAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLD-MG 255 (519)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhc-cc
Confidence 99999999999999999999999999999999999998 89999999999999984 55788999999999 99
Q ss_pred CcHHHHhhcc
Q psy10677 307 LTEETCVNVK 316 (317)
Q Consensus 307 f~~~~~~~~~ 316 (317)
|+++.+.++.
T Consensus 256 Fe~qI~~Il~ 265 (519)
T KOG0331|consen 256 FEPQIRKILS 265 (519)
T ss_pred cHHHHHHHHH
Confidence 9999988763
No 3
>KOG0341|consensus
Probab=100.00 E-value=6.4e-41 Score=302.75 Aligned_cols=222 Identities=23% Similarity=0.366 Sum_probs=194.8
Q ss_pred cCcccceec--ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhh
Q psy10677 69 LGTAGFLLS--AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYI 146 (317)
Q Consensus 69 ~g~~~iLva--arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l 146 (317)
.|+.-.-|+ |+|+-. +......|..| .++..+++++-+..|+..+|.+.|..+|.|+.+|.++++|..+
T Consensus 111 ~~k~LmsV~ElakGi~Y-------~ePi~T~WkPP--~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~ 181 (610)
T KOG0341|consen 111 DGKALMSVAELAKGITY-------EEPIKTAWKPP--RHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPL 181 (610)
T ss_pred cCccceeHHHHhCCCcc-------cCcchhccCCc--HHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHH
Confidence 343333344 888764 44444445554 3688999999999999999999999999999999999999999
Q ss_pred hcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCC---CCCCCCC
Q psy10677 147 LGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMP---KLEEGDG 223 (317)
Q Consensus 147 ~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~---~~~~~~~ 223 (317)
++.|++.|+.+| ||||-+.+|.++ +|+|++ ++|-||||||+.|.||++...+.+. +..++.|
T Consensus 182 L~~lk~KGI~~P---------TpIQvQGlPvvL--sGRDmI----GIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 182 LRGLKKKGIVHP---------TPIQVQGLPVVL--SGRDMI----GIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred HHHHHhcCCCCC---------CceeecCcceEe--ecCcee----eEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 999999999999 999999999999 999999 9999999999999999999887654 4456789
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcCC------CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcCCC----
Q psy10677 224 PIALVLAPTRELAQQIQAVISIFSRTM------RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQNDA---- 290 (317)
Q Consensus 224 ~~alil~PtreLa~Qi~~~~~~l~~~~------~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~~~---- 290 (317)
|.+||+||+||||.|+++.+..+...+ .+++.++.||.+..+|...+++ |+|+|||||.|+|..+.+
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~ 326 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDA 326 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHH
Confidence 999999999999999999999887644 5999999999999999999988 799999999999999854
Q ss_pred -CCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 291 -HSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 291 -~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
++++|||||||+| |||++|.+..+
T Consensus 327 CRyL~lDEADRmiD-mGFEddir~iF 351 (610)
T KOG0341|consen 327 CRYLTLDEADRMID-MGFEDDIRTIF 351 (610)
T ss_pred HHHhhhhhHHHHhh-ccchhhHHHHH
Confidence 4789999999999 99999988754
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.1e-39 Score=318.82 Aligned_cols=216 Identities=32% Similarity=0.497 Sum_probs=190.5
Q ss_pred cCCCCCCcccccCCCC---CCCccccCCCCHHHHHHHHHHCCcee-ecCCCCCCcccccCCCCChhhhcccCcCCCCCCC
Q psy10677 84 PFRDDKTSVVTVPSYP---DPSVNHLQGKTKEEIDSFRKEHNITL-IGQNIPKPVKTLDETNIPSYILGPMKPKTTNNEN 159 (317)
Q Consensus 84 ~lr~~~~d~~~v~nf~---~p~~~~i~~~~~~~i~~~~~~~~i~~-~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~ 159 (317)
.+..++|+...+++|. ......+..+++++++.++..+++.+ .|.++|.|+.+|++++|++.++++|++.||..|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p- 153 (545)
T PTZ00110 75 RLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEP- 153 (545)
T ss_pred ccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCC-
Confidence 3456667666665554 12233478899999999999999987 799999999999999999999999999999999
Q ss_pred cCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH
Q psy10677 160 NHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI 239 (317)
Q Consensus 160 ~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi 239 (317)
||||.++||.++ +|+|++ ++||||||||+||++|++.++..++......+|++|||+||||||.|+
T Consensus 154 --------t~iQ~~aip~~l--~G~dvI----~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi 219 (545)
T PTZ00110 154 --------TPIQVQGWPIAL--SGRDMI----GIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQI 219 (545)
T ss_pred --------CHHHHHHHHHHh--cCCCEE----EEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHH
Confidence 999999999999 999999 999999999999999999999876554456789999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHH
Q psy10677 240 QAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
+++++++....++++++++||.+...+...+.. |+|+|||+|.+++..+ .+.++++||||+|++ +||.++.
T Consensus 220 ~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld-~gf~~~i 298 (545)
T PTZ00110 220 REQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLD-MGFEPQI 298 (545)
T ss_pred HHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhh-cchHHHH
Confidence 999999999999999999999998888777655 8999999999999875 567899999999999 9998877
Q ss_pred Hhhc
Q psy10677 312 CVNV 315 (317)
Q Consensus 312 ~~~~ 315 (317)
+..+
T Consensus 299 ~~il 302 (545)
T PTZ00110 299 RKIV 302 (545)
T ss_pred HHHH
Confidence 6543
No 5
>KOG0334|consensus
Probab=100.00 E-value=8.8e-40 Score=325.99 Aligned_cols=200 Identities=29% Similarity=0.435 Sum_probs=187.6
Q ss_pred CCCccccCCCCHHHHHHHHHHCC-ceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhcccc
Q psy10677 100 DPSVNHLQGKTKEEIDSFRKEHN-ITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIP 178 (317)
Q Consensus 100 ~p~~~~i~~~~~~~i~~~~~~~~-i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~ 178 (317)
+++..++..++.++++.|+.... +.+.|..+|+|+++|.+.|+...++..++++||.+| ||||.+|||.|
T Consensus 329 y~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~---------~~IQ~qAiP~I 399 (997)
T KOG0334|consen 329 YIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKP---------TPIQAQAIPAI 399 (997)
T ss_pred cccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCC---------cchhhhhcchh
Confidence 44556688899999999999986 999999999999999999999999999999999999 99999999999
Q ss_pred ccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Q psy10677 179 LNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLY 258 (317)
Q Consensus 179 l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~ 258 (317)
+ +|+||| ++|.||||||++|+||++.|++.+++.+.+.||.|||++||||||.||++.+++|++.++++++|+|
T Consensus 400 m--sGrdvI----gvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vy 473 (997)
T KOG0334|consen 400 M--SGRDVI----GVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVY 473 (997)
T ss_pred c--cCcceE----EeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEec
Confidence 9 999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHccC---cEEECcHHHHHHHhcC--------CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 259 GGTSKMYQVILLRI---LTSATNTSLGIYLQQN--------DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 259 gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~--------~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
||....+|+..+++ |+||||||++|++-.+ .+.++++||||+|+| +||+|+....+
T Consensus 474 gg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfd-mgfePq~~~Ii 540 (997)
T KOG0334|consen 474 GGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFD-MGFEPQITRIL 540 (997)
T ss_pred CCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhhe-eccCcccchHH
Confidence 99999999999988 8999999999998775 333888999999998 99999876544
No 6
>KOG0330|consensus
Probab=100.00 E-value=4.5e-39 Score=290.95 Aligned_cols=164 Identities=28% Similarity=0.300 Sum_probs=152.7
Q ss_pred CCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHH
Q psy10677 132 KPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYH 211 (317)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~ 211 (317)
....+|.+|++.+++++++++.||..| |+||+++||.++ .|+||+ +.|+||||||.||+||++++
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~P---------T~IQ~~aiP~~L--~g~dvI----glAeTGSGKT~afaLPIl~~ 122 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKP---------TKIQSEAIPVAL--GGRDVI----GLAETGSGKTGAFALPILQR 122 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCC---------chhhhhhcchhh--CCCcEE----EEeccCCCchhhhHHHHHHH
Confidence 456899999999999999999999999 999999999999 999999 99999999999999999999
Q ss_pred HHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhc-
Q psy10677 212 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQ- 287 (317)
Q Consensus 212 l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~- 287 (317)
|...++ .|+||||+||||||.||.+++++++..+|++++++.||.+...|...+.+ |+|||||||++++.+
T Consensus 123 LL~~p~-----~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T 197 (476)
T KOG0330|consen 123 LLQEPK-----LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT 197 (476)
T ss_pred HHcCCC-----CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc
Confidence 998653 49999999999999999999999999999999999999999999988877 999999999999994
Q ss_pred C-----CCCCCCCchhHHHhhhcCCcHHHHhhcc
Q psy10677 288 N-----DAHSPCLSVWRRLQDILGLTEETCVNVK 316 (317)
Q Consensus 288 ~-----~~~~~~lde~d~l~~~~gf~~~~~~~~~ 316 (317)
+ .++++++||||+++| +.|.++.-..++
T Consensus 198 kgf~le~lk~LVlDEADrlLd-~dF~~~ld~ILk 230 (476)
T KOG0330|consen 198 KGFSLEQLKFLVLDEADRLLD-MDFEEELDYILK 230 (476)
T ss_pred cCccHHHhHHHhhchHHhhhh-hhhHHHHHHHHH
Confidence 2 677899999999999 999988765543
No 7
>KOG0333|consensus
Probab=100.00 E-value=8.4e-39 Score=298.21 Aligned_cols=194 Identities=28% Similarity=0.406 Sum_probs=180.3
Q ss_pred cCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcC
Q psy10677 106 LQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKK 185 (317)
Q Consensus 106 i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~d 185 (317)
+.+|++.+|+-|+...++.+.|..+|+|+.+|++.+||.++++.+++.||..| ||||.+|||..+ +.+|
T Consensus 216 l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~ep---------tpIqR~aipl~l--Q~rD 284 (673)
T KOG0333|consen 216 LAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEP---------TPIQRQAIPLGL--QNRD 284 (673)
T ss_pred HHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCC---------chHHHhhccchh--ccCC
Confidence 56788999999999999999999999999999999999999999999999999 999999999999 9999
Q ss_pred cccccceeccCCChhHHHHHHHHHHHHHcCCCCCC----CCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 186 FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE----GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 186 vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~----~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
+| +.|+||||||+||++|++..|.+.++..+ ..||+|+||+||||||+||+++..+|++.++++++.++||.
T Consensus 285 ~i----gvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~ 360 (673)
T KOG0333|consen 285 PI----GVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGL 360 (673)
T ss_pred ee----eEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEeccc
Confidence 99 99999999999999999999998885543 45899999999999999999999999999999999999999
Q ss_pred CHHHHHHHccC---cEEECcHHHHHHHhc-----CCCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 262 SKMYQVILLRI---LTSATNTSLGIYLQQ-----NDAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 262 ~~~~~~~~~~~---ilv~TP~~l~~~l~~-----~~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
+.++|...++. |+|||||||++-|.+ +...++++||||+|+| |||+|+.-..+
T Consensus 361 s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiD-mgfE~dv~~iL 421 (673)
T KOG0333|consen 361 SFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMID-MGFEPDVQKIL 421 (673)
T ss_pred chhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhc-ccccHHHHHHH
Confidence 99999766666 899999999987766 5778899999999999 99999876543
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.1e-37 Score=302.51 Aligned_cols=203 Identities=16% Similarity=0.285 Sum_probs=179.3
Q ss_pred CCCCCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhcc
Q psy10677 97 SYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWT 176 (317)
Q Consensus 97 nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip 176 (317)
+|+.........+++++++.+++.+++.+.|.++|.|+.+|++++|++.++++|++.||..| ||+|.+|||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~p---------tpiQ~~aip 153 (518)
T PLN00206 83 CFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFP---------TPIQMQAIP 153 (518)
T ss_pred cCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCC---------CHHHHHHHH
Confidence 34444444345688999999999999999999999999999999999999999999999999 999999999
Q ss_pred ccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCC--CCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEE
Q psy10677 177 IPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPK--LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRH 254 (317)
Q Consensus 177 ~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~--~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~ 254 (317)
.++ +|+|++ ++||||||||+||++|++.++..... .....+|++|||+||||||.|+++.++.+.+..++++
T Consensus 154 ~il--~g~dvi----v~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~ 227 (518)
T PLN00206 154 AAL--SGRSLL----VSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKT 227 (518)
T ss_pred HHh--cCCCEE----EEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceE
Confidence 999 999999 99999999999999999999875421 1223689999999999999999999999999999999
Q ss_pred EEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 255 ACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 255 ~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
++++||.+...+...+.. |+|||||+|.+++..+ .+.++++||||+|++ .||.++..+.+
T Consensus 228 ~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~-~gf~~~i~~i~ 295 (518)
T PLN00206 228 ALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLE-RGFRDQVMQIF 295 (518)
T ss_pred EEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhh-cchHHHHHHHH
Confidence 999999999888877755 8999999999999875 456789999999999 99988766543
No 9
>KOG0336|consensus
Probab=100.00 E-value=8.3e-38 Score=284.22 Aligned_cols=204 Identities=30% Similarity=0.447 Sum_probs=179.7
Q ss_pred CCCCCCCccccCCCCHHHHHHHHHHC-Ccee----ec--CCCCCCcccccC-CCCChhhhcccCcCCCCCCCcCCCCCCC
Q psy10677 96 PSYPDPSVNHLQGKTKEEIDSFRKEH-NITL----IG--QNIPKPVKTLDE-TNIPSYILGPMKPKTTNNENNHNKNKKC 167 (317)
Q Consensus 96 ~nf~~p~~~~i~~~~~~~i~~~~~~~-~i~~----~g--~~~~~~~~~f~~-~~l~~~l~~~l~~~g~~~p~~~~~~~~~ 167 (317)
.||+..+ .+.+.+++++++++++++ +|++ .| ..+|+|.-+|++ +.--+++++.+++.||.+|
T Consensus 174 knfYke~-~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKP--------- 243 (629)
T KOG0336|consen 174 KNFYKES-NETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKP--------- 243 (629)
T ss_pred hhhhhcC-chhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCC---------
Confidence 3444444 458999999999999997 4555 23 358999999988 4678999999999999999
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCC-CCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKL-EEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~-~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
||||++|||.+| +|.|++ +.|.||+|||+||++|-+.|+..++.. ....+|.+|+++||||||.|+.-+++++
T Consensus 244 tPIqSQaWPI~L--QG~Dli----GVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 244 TPIQSQAWPILL--QGIDLI----GVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred Ccchhcccceee--cCcceE----EEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 999999999999 999999 999999999999999999999888743 3456899999999999999999999998
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhhccC
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVNVKD 317 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~~~ 317 (317)
... +++.+|+|||.+..+|.+.+++ |+|+|||||.++...+ .+.+++|||||+||| |||+++.+..+.|
T Consensus 318 syn-g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLD-MgFEpqIrkilld 394 (629)
T KOG0336|consen 318 SYN-GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLD-MGFEPQIRKILLD 394 (629)
T ss_pred hhc-CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhc-ccccHHHHHHhhh
Confidence 775 8999999999999999999988 7999999999998776 455789999999999 9999999887654
No 10
>KOG0348|consensus
Probab=100.00 E-value=6.4e-37 Score=286.17 Aligned_cols=172 Identities=23% Similarity=0.326 Sum_probs=154.6
Q ss_pred CCCCCcccccCCCCChhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHH
Q psy10677 129 NIPKPVKTLDETNIPSYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILP 207 (317)
Q Consensus 129 ~~~~~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp 207 (317)
+.|-.-..|..+||++.+...|.. +++..| |.+|+++||.++ +|+|++ +.|+||||||+||++|
T Consensus 130 e~~fts~~f~~LGL~~~lv~~L~~~m~i~~p---------TsVQkq~IP~lL--~grD~l----V~aQTGSGKTLAYllP 194 (708)
T KOG0348|consen 130 EAPFTSAAFASLGLHPHLVSHLNTKMKISAP---------TSVQKQAIPVLL--EGRDAL----VRAQTGSGKTLAYLLP 194 (708)
T ss_pred ccccccccchhcCCCHHHHHHHHHHhccCcc---------chHhhcchhhhh--cCcceE----EEcCCCCcccHHHHHH
Confidence 333444679999999999999986 599999 999999999999 999999 9999999999999999
Q ss_pred HHHHHHcCC-CCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHH
Q psy10677 208 ALYHILKMP-KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLG 282 (317)
Q Consensus 208 ~l~~l~~~~-~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~ 282 (317)
++++|..+. +..+..||+||||+||||||.|+|+.+.++.+.+ .|-.+.+.||..+..+...+++ |+|||||||.
T Consensus 195 iVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLv 274 (708)
T KOG0348|consen 195 IVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLV 274 (708)
T ss_pred HHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHH
Confidence 999998765 4567789999999999999999999999999865 5777888999999888888887 7999999999
Q ss_pred HHHhcC------CCCCCCCchhHHHhhhcCCcHHHHhhcc
Q psy10677 283 IYLQQN------DAHSPCLSVWRRLQDILGLTEETCVNVK 316 (317)
Q Consensus 283 ~~l~~~------~~~~~~lde~d~l~~~~gf~~~~~~~~~ 316 (317)
|+|++. .++++++||||+++| +||+++..+.++
T Consensus 275 DHLknT~~i~~s~LRwlVlDEaDrlle-LGfekdit~Il~ 313 (708)
T KOG0348|consen 275 DHLKNTKSIKFSRLRWLVLDEADRLLE-LGFEKDITQILK 313 (708)
T ss_pred HHHhccchheeeeeeEEEecchhHHHh-ccchhhHHHHHH
Confidence 999873 688999999999999 999999988764
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-36 Score=296.20 Aligned_cols=163 Identities=24% Similarity=0.315 Sum_probs=148.1
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+|++++|++.++++|.+.||..| ||||.++||.++ .|+|++ ++|+||||||+||++|+|+++..
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~p---------t~IQ~~~IP~~l--~g~Dvi----~~A~TGsGKT~Af~lP~l~~l~~ 93 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEP---------TPIQLAAIPLIL--AGRDVL----GQAQTGTGKTAAFLLPLLQKILK 93 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHHHHHHHHHHhc
Confidence 689999999999999999999999 999999999999 999999 99999999999999999999875
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC--
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-- 288 (317)
.. ....+.|||++||||||.||++++..++++. ++++++++||.+...|...++. |||||||||+|+++++
T Consensus 94 ~~---~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l 170 (513)
T COG0513 94 SV---ERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKL 170 (513)
T ss_pred cc---ccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCc
Confidence 31 1112229999999999999999999999998 8999999999999999988876 8999999999999998
Q ss_pred ---CCCCCCCchhHHHhhhcCCcHHHHhhcc
Q psy10677 289 ---DAHSPCLSVWRRLQDILGLTEETCVNVK 316 (317)
Q Consensus 289 ---~~~~~~lde~d~l~~~~gf~~~~~~~~~ 316 (317)
.+.++++||||+|+| |||.++....++
T Consensus 171 ~l~~v~~lVlDEADrmLd-~Gf~~~i~~I~~ 200 (513)
T COG0513 171 DLSGVETLVLDEADRMLD-MGFIDDIEKILK 200 (513)
T ss_pred chhhcCEEEeccHhhhhc-CCCHHHHHHHHH
Confidence 455788999999999 999999877653
No 12
>KOG0338|consensus
Probab=100.00 E-value=1.5e-36 Score=282.36 Aligned_cols=164 Identities=23% Similarity=0.226 Sum_probs=152.9
Q ss_pred cccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 134 VKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
..+|.+|+|+..|++++..+||..| ||||.++||..+ -|+|++ +||-||||||.||+||+|++|.
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~P---------TpIQ~a~IPval--lgkDIc----a~A~TGsGKTAAF~lPiLERLl 244 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKP---------TPIQVATIPVAL--LGKDIC----ACAATGSGKTAAFALPILERLL 244 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCC---------CchhhhcccHHh--hcchhh----heecccCCchhhhHHHHHHHHh
Confidence 3589999999999999999999999 999999999999 999999 9999999999999999999998
Q ss_pred cCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC--
Q psy10677 214 KMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-- 288 (317)
Q Consensus 214 ~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-- 288 (317)
-.++. ...-++||||||||||.|++++.++++.+.+|.+++++||.+...|...++. |+|+|||||+|||.+.
T Consensus 245 YrPk~--~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~s 322 (691)
T KOG0338|consen 245 YRPKK--VAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPS 322 (691)
T ss_pred cCccc--CcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCC
Confidence 76542 4567999999999999999999999999999999999999999999998877 9999999999999985
Q ss_pred ----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 289 ----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 289 ----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
++..++||||||||+ -||.++..+.+
T Consensus 323 f~ldsiEVLvlDEADRMLe-egFademnEii 352 (691)
T KOG0338|consen 323 FNLDSIEVLVLDEADRMLE-EGFADEMNEII 352 (691)
T ss_pred ccccceeEEEechHHHHHH-HHHHHHHHHHH
Confidence 566789999999999 99999887765
No 13
>KOG0335|consensus
Probab=100.00 E-value=4.8e-36 Score=281.65 Aligned_cols=190 Identities=23% Similarity=0.294 Sum_probs=171.3
Q ss_pred HHHHHHHHHHCCce--eecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCccc
Q psy10677 111 KEEIDSFRKEHNIT--LIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFIS 188 (317)
Q Consensus 111 ~~~i~~~~~~~~i~--~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~ 188 (317)
.+....|.+.+.+- +.|.++|.++.+|++..+.+.+..+++..||..| ||+|+.+||.+. .|+|++
T Consensus 48 ~~~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~p---------tpvQk~sip~i~--~Grdl~- 115 (482)
T KOG0335|consen 48 ISTGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKP---------TPVQKYSIPIIS--GGRDLM- 115 (482)
T ss_pred cchhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCC---------Ccceeeccceee--cCCceE-
Confidence 45556666666654 4899999999999999999999999999999999 999999999999 999999
Q ss_pred ccceeccCCChhHHHHHHHHHHHHHcCCCCC-----CCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCH
Q psy10677 189 VLQKKAEVQSRSVFTYILPALYHILKMPKLE-----EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 263 (317)
Q Consensus 189 ~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~-----~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~ 263 (317)
+||+||||||.||++|++.++.+..... ....|++|||+||||||.|++++++++....+++++.+|||.+.
T Consensus 116 ---acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~ 192 (482)
T KOG0335|consen 116 ---ACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDL 192 (482)
T ss_pred ---EEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcch
Confidence 9999999999999999999998875321 12369999999999999999999999999999999999999999
Q ss_pred HHHHHHccC---cEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 264 MYQVILLRI---LTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 264 ~~~~~~~~~---ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
..+...+.+ |+|||||||.++++.+ .+.+++|||||+|+|.|||.|+.+..+
T Consensus 193 ~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv 252 (482)
T KOG0335|consen 193 GAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIV 252 (482)
T ss_pred hhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHh
Confidence 988888877 8999999999999998 455789999999999999999998765
No 14
>KOG0343|consensus
Probab=100.00 E-value=6.4e-36 Score=280.32 Aligned_cols=180 Identities=19% Similarity=0.312 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHCC-ceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCccc
Q psy10677 110 TKEEIDSFRKEHN-ITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFIS 188 (317)
Q Consensus 110 ~~~~i~~~~~~~~-i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~ 188 (317)
.+++++++..... +. ...+..|.+++|+...+++|++.+|..| |.||+++||..| .|+||+
T Consensus 49 Eee~i~~l~~ky~ei~------~~~~~kF~dlpls~~t~kgLke~~fv~~---------teiQ~~~Ip~aL--~G~Dvl- 110 (758)
T KOG0343|consen 49 EEEEIEELKQKYAEID------STTIKKFADLPLSQKTLKGLKEAKFVKM---------TEIQRDTIPMAL--QGHDVL- 110 (758)
T ss_pred hHHHHHHHHHHHHHhh------hhhhhhHHhCCCchHHHHhHhhcCCccH---------HHHHHhhcchhc--cCcccc-
Confidence 4566666654432 22 2356789999999999999999999999 999999999999 999999
Q ss_pred ccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHH
Q psy10677 189 VLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVI 268 (317)
Q Consensus 189 ~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~ 268 (317)
+.|.|||||||||++|+|++|.+. ++....|..|||++||||||.|+++++.+.+++.++.+.++.||.+......
T Consensus 111 ---GAAkTGSGKTLAFlvPvlE~L~r~-kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~e 186 (758)
T KOG0343|consen 111 ---GAAKTGSGKTLAFLVPVLEALYRL-KWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELE 186 (758)
T ss_pred ---cccccCCCceeeehHHHHHHHHHc-CCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHH
Confidence 999999999999999999999875 5677889999999999999999999999999999999999999999998888
Q ss_pred HccC--cEEECcHHHHHHHhcC------CCCCCCCchhHHHhhhcCCcHHHH
Q psy10677 269 LLRI--LTSATNTSLGIYLQQN------DAHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 269 ~~~~--ilv~TP~~l~~~l~~~------~~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
.+.. |+|||||||+.+|.++ .+.+++|||||||+| |||....-
T Consensus 187 Ri~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LD-MGFk~tL~ 237 (758)
T KOG0343|consen 187 RISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLD-MGFKKTLN 237 (758)
T ss_pred hhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHH-HhHHHHHH
Confidence 8877 8999999999999985 788999999999999 99976543
No 15
>KOG0345|consensus
Probab=100.00 E-value=2e-35 Score=272.81 Aligned_cols=165 Identities=21% Similarity=0.262 Sum_probs=147.1
Q ss_pred ccccCCC--CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 135 KTLDETN--IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 135 ~~f~~~~--l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
.+|++++ |++++++++.+.||... ||+|..+||.++ .++||+ +.|+||||||+||++|+++.+
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~m---------TpVQa~tIPlll--~~KDVv----veavTGSGKTlAFllP~le~i 68 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKM---------TPVQAATIPLLL--KNKDVV----VEAVTGSGKTLAFLLPMLEII 68 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCccc---------CHHHHhhhHHHh--cCCceE----EEcCCCCCchhhHHHHHHHHH
Confidence 4688776 55999999999999999 999999999999 999999 999999999999999999999
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcC-CCcEEEEEECCCCHHHHHHHccC----cEEECcHHHHHHHhc
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT-MRIRHACLYGGTSKMYQVILLRI----LTSATNTSLGIYLQQ 287 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~-~~~~~~~~~gg~~~~~~~~~~~~----ilv~TP~~l~~~l~~ 287 (317)
.+...........|||++||||||.||.+++..|..+ .++.+.+++||.+..+....++. |+|||||||.+++++
T Consensus 69 ~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~ 148 (567)
T KOG0345|consen 69 YRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQR 148 (567)
T ss_pred HhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhc
Confidence 6654322223578999999999999999999999988 58999999999999998887766 899999999999998
Q ss_pred C-------CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 288 N-------DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 288 ~-------~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
. .+.+++|||||+++| |||..+..+.+
T Consensus 149 ~~~~l~~rsLe~LVLDEADrLld-mgFe~~~n~IL 182 (567)
T KOG0345|consen 149 EAEKLSFRSLEILVLDEADRLLD-MGFEASVNTIL 182 (567)
T ss_pred hhhhccccccceEEecchHhHhc-ccHHHHHHHHH
Confidence 3 677899999999999 99998887654
No 16
>KOG0342|consensus
Probab=100.00 E-value=5e-35 Score=271.54 Aligned_cols=167 Identities=23% Similarity=0.243 Sum_probs=153.6
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+...|++..|++..+++++++||+.. |++|..++|+++ .|+|++ +.|.||||||+||+||+++.+
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~M---------T~VQ~~ti~pll--~gkDvl----~~AKTGtGKTlAFLiPaie~l 144 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETM---------TPVQQKTIPPLL--EGKDVL----AAAKTGTGKTLAFLLPAIELL 144 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccch---------hHHHHhhcCccC--CCccce----eeeccCCCceeeehhHHHHHH
Confidence 45678999999999999999999999 999999999999 999999 999999999999999999999
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~ 288 (317)
.+.+...+ ++..+||+|||||||.|++.+++++.++. ++.+..+.||++.......+.+ |+|+|||||+|++++.
T Consensus 145 ~k~~~~~r-~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt 223 (543)
T KOG0342|consen 145 RKLKFKPR-NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNT 223 (543)
T ss_pred HhcccCCC-CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcC
Confidence 98765444 78899999999999999999999999988 9999999999998877777766 8999999999999984
Q ss_pred ------CCCCCCCchhHHHhhhcCCcHHHHhhcc
Q psy10677 289 ------DAHSPCLSVWRRLQDILGLTEETCVNVK 316 (317)
Q Consensus 289 ------~~~~~~lde~d~l~~~~gf~~~~~~~~~ 316 (317)
.++.+++||||+++| +||.++..+.++
T Consensus 224 ~~f~~r~~k~lvlDEADrlLd-~GF~~di~~Ii~ 256 (543)
T KOG0342|consen 224 SGFLFRNLKCLVLDEADRLLD-IGFEEDVEQIIK 256 (543)
T ss_pred CcchhhccceeEeecchhhhh-cccHHHHHHHHH
Confidence 456789999999999 999999988764
No 17
>KOG0340|consensus
Probab=100.00 E-value=6.2e-34 Score=255.03 Aligned_cols=159 Identities=22% Similarity=0.252 Sum_probs=149.5
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
....|++|||++++.+.|+.+|+..| ||||..|||.|+ .|+|++ ++|.||||||+||.+|+++++
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~p---------TpiQ~~cIpkIL--eGrdci----g~AkTGsGKT~AFaLPil~rL 69 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKP---------TPIQQACIPKIL--EGRDCI----GCAKTGSGKTAAFALPILNRL 69 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCC---------CchHhhhhHHHh--cccccc----cccccCCCcchhhhHHHHHhh
Confidence 45789999999999999999999999 999999999999 999999 999999999999999999999
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN- 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~- 288 (317)
.+++ .|..|+|++||||||.|+.+++..+++.+++++++++||++.-.|...+.. ++|+||||+.+++..+
T Consensus 70 sedP-----~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~ 144 (442)
T KOG0340|consen 70 SEDP-----YGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNL 144 (442)
T ss_pred ccCC-----CcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCC
Confidence 9874 589999999999999999999999999999999999999999988888876 9999999999999886
Q ss_pred --------CCCCCCCchhHHHhhhcCCcHHHH
Q psy10677 289 --------DAHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 289 --------~~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
.+.+.++||||+|++ -.|.++..
T Consensus 145 ~~~~~~~~rlkflVlDEADrvL~-~~f~d~L~ 175 (442)
T KOG0340|consen 145 GVCSWIFQRLKFLVLDEADRVLA-GCFPDILE 175 (442)
T ss_pred ccchhhhhceeeEEecchhhhhc-cchhhHHh
Confidence 678999999999999 88877643
No 18
>KOG0346|consensus
Probab=100.00 E-value=1.1e-33 Score=259.47 Aligned_cols=164 Identities=24% Similarity=0.262 Sum_probs=148.5
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+|++++|++.|++++.+.||..| |.||..|||.++ .|+|++ +.|.||||||+||++|+++.|..
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekp---------TlIQs~aIplaL--EgKDvv----arArTGSGKT~AYliPllqkll~ 83 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKP---------TLIQSSAIPLAL--EGKDVV----ARARTGSGKTAAYLIPLLQKLLA 83 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCc---------chhhhcccchhh--cCccee----eeeccCCCchHHHHHHHHHHHHH
Confidence 699999999999999999999999 999999999999 999999 99999999999999999999988
Q ss_pred CCCC-CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC--CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC
Q psy10677 215 MPKL-EEGDGPIALVLAPTRELAQQIQAVISIFSRTM--RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN 288 (317)
Q Consensus 215 ~~~~-~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~--~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~ 288 (317)
.+.. ....+|.|+||+||||||+|+|+++.++.... .++++-+..+++.......+.. |+|+||++++.++..+
T Consensus 84 ~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~ 163 (569)
T KOG0346|consen 84 EKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAG 163 (569)
T ss_pred hhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhc
Confidence 7654 45668999999999999999999999998876 4788888877777766666655 9999999999999887
Q ss_pred ------CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 289 ------DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 289 ------~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
.+.++++||||-|+. +|++++.+..
T Consensus 164 ~~~~~~~l~~LVvDEADLlls-fGYeedlk~l 194 (569)
T KOG0346|consen 164 VLEYLDSLSFLVVDEADLLLS-FGYEEDLKKL 194 (569)
T ss_pred cchhhhheeeEEechhhhhhh-cccHHHHHHH
Confidence 477899999999999 9999998754
No 19
>KOG0347|consensus
Probab=100.00 E-value=9.6e-34 Score=265.66 Aligned_cols=167 Identities=23% Similarity=0.278 Sum_probs=148.7
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC-cCcccccceeccCCChhHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA-KKFISVLQKKAEVQSRSVFTYILPALYH 211 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~ 211 (317)
-+.-|.+++||.+++++|.++||..| |+||+.++|.+. .| .|++ +.|.|||||||||-+||+++
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~P---------t~IQsl~lp~ai--~gk~DIl----GaAeTGSGKTLAFGIPiv~~ 243 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRP---------TEIQSLVLPAAI--RGKVDIL----GAAETGSGKTLAFGIPIVER 243 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCC---------ccchhhcccHhh--ccchhcc----cccccCCCceeeecchhhhh
Confidence 45789999999999999999999999 999999999999 99 8999 99999999999999999997
Q ss_pred HHcCCCCC------CCCC--ceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHH
Q psy10677 212 ILKMPKLE------EGDG--PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTS 280 (317)
Q Consensus 212 l~~~~~~~------~~~~--~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~ 280 (317)
+......+ ...+ |.+||++||||||.||.+.+.+++...++++..++||.....|...++. |+|+||||
T Consensus 244 l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGR 323 (731)
T KOG0347|consen 244 LLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGR 323 (731)
T ss_pred hhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchH
Confidence 76543211 1223 4599999999999999999999999999999999999999999888876 99999999
Q ss_pred HHHHHhcC--------CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 281 LGIYLQQN--------DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 281 l~~~l~~~--------~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
||++++++ +++.++|||||||++ -|.+++..+.+
T Consensus 324 lweli~e~n~~l~~~k~vkcLVlDEaDRmve-kghF~Els~lL 365 (731)
T KOG0347|consen 324 LWELIEEDNTHLGNFKKVKCLVLDEADRMVE-KGHFEELSKLL 365 (731)
T ss_pred HHHHHHhhhhhhhhhhhceEEEEccHHHHhh-hccHHHHHHHH
Confidence 99999985 577899999999999 88777776654
No 20
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.3e-33 Score=266.16 Aligned_cols=166 Identities=20% Similarity=0.279 Sum_probs=148.9
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+-.+|++++|++.++++|.+.||..| ||+|.+|||.++ +|+|++ ++||||||||+||++|+++++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~p---------t~iQ~~aip~il--~g~dvi----~~ApTGsGKTla~llp~l~~l 70 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNC---------TPIQALALPLTL--AGRDVA----GQAQTGTGKTMAFLTATFHYL 70 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCcEE----EECCCCchHHHHHHHHHHHHH
Confidence 34689999999999999999999999 999999999999 999999 999999999999999999999
Q ss_pred HcCCCC--CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhc
Q psy10677 213 LKMPKL--EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQ 287 (317)
Q Consensus 213 ~~~~~~--~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~ 287 (317)
...+.. ....++++|||+||||||.|+++++..+.+..++++..++||.+...+...+.. |+|||||+|.+++..
T Consensus 71 ~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~ 150 (423)
T PRK04837 71 LSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ 150 (423)
T ss_pred HhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc
Confidence 865432 123479999999999999999999999999999999999999998888777764 899999999999987
Q ss_pred C-----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 288 N-----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 288 ~-----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
+ .+.+.++||||+|++ .||..+....
T Consensus 151 ~~~~l~~v~~lViDEad~l~~-~~f~~~i~~i 181 (423)
T PRK04837 151 NHINLGAIQVVVLDEADRMFD-LGFIKDIRWL 181 (423)
T ss_pred CCcccccccEEEEecHHHHhh-cccHHHHHHH
Confidence 5 567888999999999 9998876543
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=1.4e-31 Score=265.48 Aligned_cols=166 Identities=23% Similarity=0.314 Sum_probs=147.2
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+..+|++++|++.++++|.+.||..| ||||.++||.++ +|+|++ ++||||||||+||++|+++++
T Consensus 7 ~~~~f~~l~l~~~l~~~L~~~g~~~p---------tpiQ~~~ip~~l--~G~Dvi----~~ApTGSGKTlafllpil~~l 71 (572)
T PRK04537 7 TDLTFSSFDLHPALLAGLESAGFTRC---------TPIQALTLPVAL--PGGDVA----GQAQTGTGKTLAFLVAVMNRL 71 (572)
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EEcCCCCcHHHHHHHHHHHHH
Confidence 33479999999999999999999999 999999999999 999999 999999999999999999999
Q ss_pred HcCCCC--CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhc
Q psy10677 213 LKMPKL--EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQ 287 (317)
Q Consensus 213 ~~~~~~--~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~ 287 (317)
...+.. ....++++|||+||||||.|+++.+.++....++++..++||.+...+...+.. |||+||++|++++..
T Consensus 72 ~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~ 151 (572)
T PRK04537 72 LSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQ 151 (572)
T ss_pred HhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHh
Confidence 764321 122368999999999999999999999999999999999999999888777754 999999999999876
Q ss_pred C------CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 288 N------DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 288 ~------~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
+ .+.++++||||.|++ +||.++.+..
T Consensus 152 ~~~~~l~~v~~lViDEAh~lld-~gf~~~i~~i 183 (572)
T PRK04537 152 HKVVSLHACEICVLDEADRMFD-LGFIKDIRFL 183 (572)
T ss_pred ccccchhheeeeEecCHHHHhh-cchHHHHHHH
Confidence 4 345789999999999 9998876544
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.97 E-value=4.3e-31 Score=256.43 Aligned_cols=163 Identities=23% Similarity=0.290 Sum_probs=145.4
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+|++++|++.++++|.+.||..| |++|.++||.++ +|+|++ ++||||||||+||++|+++.+...
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p---------t~iQ~~ai~~il--~g~dvl----v~apTGsGKTla~~lpil~~l~~~ 66 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREP---------TPIQQQAIPAVL--EGRDLM----ASAQTGTGKTAGFTLPLLQHLITR 66 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCCcHHHHHHHHHHHHhhhc
Confidence 79999999999999999999999 999999999999 999999 999999999999999999999765
Q ss_pred CCCC-CCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC---
Q psy10677 216 PKLE-EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN--- 288 (317)
Q Consensus 216 ~~~~-~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~--- 288 (317)
.... ....+++|||+||||||.|+++.++.+.+..++++..++||.+...+...+.. |+||||++|++++..+
T Consensus 67 ~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~ 146 (456)
T PRK10590 67 QPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVK 146 (456)
T ss_pred ccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcc
Confidence 3221 12346899999999999999999999999999999999999999888776654 9999999999988765
Q ss_pred --CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 289 --DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 289 --~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
.++++++||||+|++ .||..+.+..
T Consensus 147 l~~v~~lViDEah~ll~-~~~~~~i~~i 173 (456)
T PRK10590 147 LDQVEILVLDEADRMLD-MGFIHDIRRV 173 (456)
T ss_pred cccceEEEeecHHHHhc-cccHHHHHHH
Confidence 567889999999999 9997766543
No 23
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.97 E-value=5e-31 Score=256.41 Aligned_cols=160 Identities=21% Similarity=0.219 Sum_probs=144.9
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+|++++|++.++++|.++||..| ||+|.+|||.++ +|+|++ ++||||||||+||++|+++++..
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~---------t~iQ~~ai~~~l--~g~dvi----~~a~TGsGKT~a~~lpil~~l~~ 68 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEM---------TPIQAQSLPAIL--AGKDVI----AQAKTGSGKTAAFGLGLLQKLDV 68 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--cCCCEE----EECCCCCcHHHHHHHHHHHHhhh
Confidence 589999999999999999999999 999999999999 999999 99999999999999999999864
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC--
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-- 288 (317)
. ..++++|||+||||||.|+.+.++.+.+.. ++++..++||.+...+...+.. |+|||||+|.+++.++
T Consensus 69 ~-----~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~ 143 (460)
T PRK11776 69 K-----RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTL 143 (460)
T ss_pred c-----cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCc
Confidence 3 246799999999999999999999998765 7999999999999888877765 8999999999999876
Q ss_pred ---CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 289 ---DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 289 ---~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
.++++++||||+|++ +||.++....+
T Consensus 144 ~l~~l~~lViDEad~~l~-~g~~~~l~~i~ 172 (460)
T PRK11776 144 DLDALNTLVLDEADRMLD-MGFQDAIDAII 172 (460)
T ss_pred cHHHCCEEEEECHHHHhC-cCcHHHHHHHH
Confidence 466789999999999 99987765443
No 24
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.97 E-value=1.3e-30 Score=251.64 Aligned_cols=162 Identities=22% Similarity=0.363 Sum_probs=146.0
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
++|++++|++.++++|++.||..| |++|.++||.++ .|+|++ ++||||||||+||++|+++++..
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p---------~~iQ~~ai~~~~--~g~d~l----~~apTGsGKT~~~~lp~l~~l~~ 65 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRP---------TAIQAEAIPPAL--DGRDVL----GSAPTGTGKTAAFLLPALQHLLD 65 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHHHHHHHHHHhh
Confidence 379999999999999999999999 999999999999 999999 99999999999999999999976
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC---
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN--- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~--- 288 (317)
.+. .....+++||++||+|||.|+++.+..+.+..++++..++||.+...+...+.. |+|||||+|++++..+
T Consensus 66 ~~~-~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~ 144 (434)
T PRK11192 66 FPR-RKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFD 144 (434)
T ss_pred ccc-cCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcC
Confidence 432 223468999999999999999999999999999999999999999888877654 9999999999998876
Q ss_pred --CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 289 --DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 289 --~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
.+.++++||||+|++ +||.++...
T Consensus 145 ~~~v~~lViDEah~~l~-~~~~~~~~~ 170 (434)
T PRK11192 145 CRAVETLILDEADRMLD-MGFAQDIET 170 (434)
T ss_pred cccCCEEEEECHHHHhC-CCcHHHHHH
Confidence 456788999999999 999877654
No 25
>KOG0328|consensus
Probab=99.97 E-value=6.8e-32 Score=235.59 Aligned_cols=165 Identities=19% Similarity=0.201 Sum_probs=150.7
Q ss_pred CCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHH
Q psy10677 129 NIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPA 208 (317)
Q Consensus 129 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~ 208 (317)
.-..++.+|++++|.+++++++...||++| +.||+.|+|.++ +|+||+ ++|.+|+|||.+|-+.+
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekP---------S~IQqrAi~~Il--kGrdVi----aQaqSGTGKTa~~si~v 85 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKP---------SAIQQRAIPQIL--KGRDVI----AQAQSGTGKTATFSISV 85 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCc---------hHHHhhhhhhhh--cccceE----EEecCCCCceEEEEeee
Confidence 345678899999999999999999999999 999999999999 999999 99999999999999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHH
Q psy10677 209 LYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYL 285 (317)
Q Consensus 209 l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l 285 (317)
++.+.-. ....+||||+||||||.|+.+++..++.++++.+..+.||.+..+..+.+.. ++.|||||+++++
T Consensus 86 lq~~d~~-----~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmi 160 (400)
T KOG0328|consen 86 LQSLDIS-----VRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMI 160 (400)
T ss_pred eeecccc-----cceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHH
Confidence 9887654 2458999999999999999999999999999999999999999888887766 6999999999999
Q ss_pred hcC-----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 286 QQN-----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 286 ~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
+++ .+.+++|||||.||+ -||.++..-.
T Consensus 161 kr~~L~tr~vkmlVLDEaDemL~-kgfk~Qiydi 193 (400)
T KOG0328|consen 161 KRRSLRTRAVKMLVLDEADEMLN-KGFKEQIYDI 193 (400)
T ss_pred HhccccccceeEEEeccHHHHHH-hhHHHHHHHH
Confidence 987 456889999999999 6999887644
No 26
>KOG0326|consensus
Probab=99.97 E-value=8.2e-32 Score=238.54 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=144.8
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
..|+++.|..+|+..+.+.||++| +|||.++||.++ +|+|++ +.|.+|+|||.||++|+|+++..
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekP---------SPiQeesIPiaL--tGrdiL----aRaKNGTGKT~a~~IP~Lekid~ 149 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKP---------SPIQEESIPIAL--TGRDIL----ARAKNGTGKTAAYCIPVLEKIDP 149 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCC---------CCccccccceee--cchhhh----hhccCCCCCccceechhhhhcCc
Confidence 469999999999999999999999 999999999999 999999 99999999999999999999976
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC---
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN--- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~--- 288 (317)
. ....+++|++||||||.|+.+.|+.+++++++++...+||++..+.+..+.. ++||||||++|+++++
T Consensus 150 ~-----~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ 224 (459)
T KOG0326|consen 150 K-----KNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVAD 224 (459)
T ss_pred c-----ccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccccc
Confidence 4 4579999999999999999999999999999999999999999998888877 7999999999999997
Q ss_pred --CCCCCCCchhHHHhhhcCCcHHH
Q psy10677 289 --DAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 289 --~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
+..++++||||+|++ ..|.+-.
T Consensus 225 ls~c~~lV~DEADKlLs-~~F~~~~ 248 (459)
T KOG0326|consen 225 LSDCVILVMDEADKLLS-VDFQPIV 248 (459)
T ss_pred chhceEEEechhhhhhc-hhhhhHH
Confidence 556789999999999 7776543
No 27
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.97 E-value=2e-30 Score=259.06 Aligned_cols=161 Identities=23% Similarity=0.259 Sum_probs=145.3
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
...+|++++|++.++++|.++||..| ||+|.++||.++ .|+|++ ++||||||||+||++|+++.+
T Consensus 4 ~~~~f~~l~L~~~ll~al~~~G~~~p---------tpiQ~~ai~~ll--~g~dvl----~~ApTGsGKT~af~lpll~~l 68 (629)
T PRK11634 4 FETTFADLGLKAPILEALNDLGYEKP---------SPIQAECIPHLL--NGRDVL----GMAQTGSGKTAAFSLPLLHNL 68 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHH--cCCCEE----EEcCCCCcHHHHHHHHHHHHh
Confidence 34579999999999999999999999 999999999999 999999 999999999999999999998
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~ 288 (317)
... ..+|++|||+||||||.|+++.+..+.+.+ +++++.++||.+...+...++. |||||||+|.+++.++
T Consensus 69 ~~~-----~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~ 143 (629)
T PRK11634 69 DPE-----LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG 143 (629)
T ss_pred hhc-----cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 653 346899999999999999999999998875 7999999999999988887765 8999999999999876
Q ss_pred C-----CCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 289 D-----AHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 289 ~-----~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
. +.+++|||||.|++ +||.++....
T Consensus 144 ~l~l~~l~~lVlDEAd~ml~-~gf~~di~~I 173 (629)
T PRK11634 144 TLDLSKLSGLVLDEADEMLR-MGFIEDVETI 173 (629)
T ss_pred CcchhhceEEEeccHHHHhh-cccHHHHHHH
Confidence 4 45689999999999 9998876543
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=1.5e-29 Score=247.01 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=146.3
Q ss_pred cccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 134 VKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
..+|.+++|++.++++|.+.||..| |++|.++||.++ +|+|++ ++||||||||+||++|+++++.
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~---------~~iQ~~ai~~~~--~G~dvi----~~apTGSGKTlay~lpil~~l~ 150 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYC---------TPIQAQVLGYTL--AGHDAI----GRAQTGTGKTAAFLISIINQLL 150 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHHHHHHHHHHH
Confidence 4579999999999999999999999 999999999999 999999 9999999999999999999998
Q ss_pred cCCCCC--CCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHHHHhc
Q psy10677 214 KMPKLE--EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR----ILTSATNTSLGIYLQQ 287 (317)
Q Consensus 214 ~~~~~~--~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~~l~~ 287 (317)
..+... ...++++|||+||+|||.|+++.++.+.+.+++++..++||.+...+...+. +|+|+||++|++++..
T Consensus 151 ~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~ 230 (475)
T PRK01297 151 QTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR 230 (475)
T ss_pred hcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc
Confidence 754211 1236899999999999999999999999999999999999999887776664 3999999999998886
Q ss_pred C-----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 288 N-----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 288 ~-----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
+ .+++.++||+|.+++ .||.+..+..
T Consensus 231 ~~~~l~~l~~lViDEah~l~~-~~~~~~l~~i 261 (475)
T PRK01297 231 GEVHLDMVEVMVLDEADRMLD-MGFIPQVRQI 261 (475)
T ss_pred CCcccccCceEEechHHHHHh-cccHHHHHHH
Confidence 4 577899999999999 8998766544
No 29
>KOG0337|consensus
Probab=99.95 E-value=4.3e-29 Score=228.18 Aligned_cols=161 Identities=23% Similarity=0.279 Sum_probs=148.7
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
-+|..+||+..+.+++.+.||..| ||||.+.+|.+| +|+|++ ..|.||||||.||++|+++++..
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~p---------tpiqRKTipliL--e~~dvv----~martgsgktaaf~ipm~e~Lk~ 85 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTP---------TPIQRKTIPLIL--EGRDVV----GMARTGSGKTAAFLIPMIEKLKS 85 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCC---------Cchhccccccee--eccccc----eeeecCCcchhhHHHHHHHHHhh
Confidence 379999999999999999999999 999999999999 999999 99999999999999999999976
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhc----
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQ---- 287 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~---- 287 (317)
.. ..|.+|+|++||||||.|..++++.+++++++++++++||.+..+|...+.. ||++||||+..+.-+
T Consensus 86 ~s----~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~ 161 (529)
T KOG0337|consen 86 HS----QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLT 161 (529)
T ss_pred cc----ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheecc
Confidence 52 5689999999999999999999999999999999999999999999999953 899999999865433
Q ss_pred -CCCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 288 -NDAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 288 -~~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
..+.+++.||||++++ |||.|+..+.+
T Consensus 162 l~sveyVVfdEadrlfe-mgfqeql~e~l 189 (529)
T KOG0337|consen 162 LSSVEYVVFDEADRLFE-MGFQEQLHEIL 189 (529)
T ss_pred ccceeeeeehhhhHHHh-hhhHHHHHHHH
Confidence 5677888899999999 99999988765
No 30
>KOG0327|consensus
Probab=99.95 E-value=9.2e-29 Score=224.26 Aligned_cols=165 Identities=19% Similarity=0.199 Sum_probs=147.4
Q ss_pred CCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHH
Q psy10677 130 IPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPAL 209 (317)
Q Consensus 130 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l 209 (317)
+-.-+.+|+|++|+++|++.+...||++| |.||+.||+++. .|.|+. ++|++|+|||.||.++++
T Consensus 21 ~~evvdsfddm~L~e~LLrgiy~yGFekP---------SaIQqraI~p~i--~G~dv~----~qaqsgTgKt~af~i~iL 85 (397)
T KOG0327|consen 21 WNEVVDSFDDMNLKESLLRGIYAYGFEKP---------SAIQQRAILPCI--KGHDVI----AQAQSGTGKTAAFLISIL 85 (397)
T ss_pred HHHHhhhhhhcCCCHHHHhHHHhhccCCc---------hHHHhccccccc--cCCcee----EeeeccccchhhhHHHHH
Confidence 33345699999999999999999999999 999999999999 999999 999999999999999999
Q ss_pred HHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC----cEEECcHHHHHHH
Q psy10677 210 YHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI----LTSATNTSLGIYL 285 (317)
Q Consensus 210 ~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~----ilv~TP~~l~~~l 285 (317)
+++.-. ....+|++++||||||.|+.++.+.+...++.++..+.||.....+..+++. |+||||||+.+++
T Consensus 86 q~iD~~-----~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml 160 (397)
T KOG0327|consen 86 QQIDMS-----VKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDML 160 (397)
T ss_pred hhcCcc-----hHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhh
Confidence 998543 3578999999999999999999999999999999999999998755544433 8999999999999
Q ss_pred hcC-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 286 QQN-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 286 ~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
+.+ .+.+.++||||.|++ .||.++.+..+
T Consensus 161 ~~~~l~~~~iKmfvlDEaDEmLs-~gfkdqI~~if 194 (397)
T KOG0327|consen 161 NRGSLSTDGIKMFVLDEADEMLS-RGFKDQIYDIF 194 (397)
T ss_pred ccccccccceeEEeecchHhhhc-cchHHHHHHHH
Confidence 665 567889999999999 99999887654
No 31
>KOG0350|consensus
Probab=99.95 E-value=3.9e-28 Score=225.97 Aligned_cols=152 Identities=18% Similarity=0.120 Sum_probs=130.2
Q ss_pred ccccCCCCChh----------hhcccCcCCCCCCCcCCCCCCCCchhhhhcccccc-------ccCcCcccccceeccCC
Q psy10677 135 KTLDETNIPSY----------ILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLN-------FQAKKFISVLQKKAEVQ 197 (317)
Q Consensus 135 ~~f~~~~l~~~----------l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~-------~~g~dvi~~~~~~a~tG 197 (317)
.-|+.++++.. +.+++.++++... .|+|.+++|.++. ..++|+. +.||||
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~---------FPVQ~aVlp~ll~~~~~p~~~r~rDIc----V~ApTG 193 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRL---------FPVQYAVLPSLLEEIRSPPPSRPRDIC----VNAPTG 193 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccc---------cchHHHHHHHHHHhhcCCCCCCCCceE----EecCCC
Confidence 45666665544 4445888999999 9999999988853 2478999 999999
Q ss_pred ChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-----
Q psy10677 198 SRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI----- 272 (317)
Q Consensus 198 sGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~----- 272 (317)
||||+||.|||++.+...+ .+..+|||++|||+|+.|+++++.+++.+.|+.++.+.|-.+.......+..
T Consensus 194 SGKTLaY~iPIVQ~L~~R~----v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~ 269 (620)
T KOG0350|consen 194 SGKTLAYVIPIVQLLSSRP----VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPEC 269 (620)
T ss_pred CCceeeehhHHHHHHccCC----ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCcc
Confidence 9999999999999887643 3568999999999999999999999999999999999998888777766644
Q ss_pred ---cEEECcHHHHHHHhc------CCCCCCCCchhHHHhh
Q psy10677 273 ---LTSATNTSLGIYLQQ------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 273 ---ilv~TP~~l~~~l~~------~~~~~~~lde~d~l~~ 303 (317)
|+|+|||||.|||.. +.++|+++||||||++
T Consensus 270 ~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~ 309 (620)
T KOG0350|consen 270 RIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLD 309 (620)
T ss_pred ccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHH
Confidence 899999999999995 4788999999999999
No 32
>PTZ00424 helicase 45; Provisional
Probab=99.94 E-value=7.8e-27 Score=222.99 Aligned_cols=159 Identities=21% Similarity=0.214 Sum_probs=141.5
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
...+|+++++++.+.++|.+.||..| ||+|.+|||.++ +|+|++ ++||||||||++|++|+++.+
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~---------~~~Q~~ai~~i~--~~~d~i----i~apTGsGKT~~~~l~~l~~~ 90 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKP---------SAIQQRGIKPIL--DGYDTI----GQAQSGTGKTATFVIAALQLI 90 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHHHHHHHHHh
Confidence 35789999999999999999999999 999999999999 999999 999999999999999999988
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN- 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~- 288 (317)
... ..++++|||+||+|||.|+++.+..+....++++..++||.....+...+.. |+|+||++|.+++..+
T Consensus 91 ~~~-----~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~ 165 (401)
T PTZ00424 91 DYD-----LNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH 165 (401)
T ss_pred cCC-----CCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC
Confidence 642 2467999999999999999999999998888999999999988777666654 8999999999988764
Q ss_pred ----CCCCCCCchhHHHhhhcCCcHHHH
Q psy10677 289 ----DAHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 289 ----~~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
.+++.++||+|.+++ .||.....
T Consensus 166 ~~l~~i~lvViDEah~~~~-~~~~~~~~ 192 (401)
T PTZ00424 166 LRVDDLKLFILDEADEMLS-RGFKGQIY 192 (401)
T ss_pred cccccccEEEEecHHHHHh-cchHHHHH
Confidence 567889999999998 78765443
No 33
>KOG0344|consensus
Probab=99.94 E-value=3.8e-27 Score=223.52 Aligned_cols=183 Identities=18% Similarity=0.198 Sum_probs=152.8
Q ss_pred HHHHHHHHCCceeecCCCCCCcccccC----CCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCccc
Q psy10677 113 EIDSFRKEHNITLIGQNIPKPVKTLDE----TNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFIS 188 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~~~~~~~f~~----~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~ 188 (317)
.....|+.+.+.+.|.++|.|+.+|++ ...++.+++.+.+.||..| ||+|++|+|.++ .++|++
T Consensus 110 ~~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~P---------t~iq~~aipvfl--~~r~~l- 177 (593)
T KOG0344|consen 110 KLLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEP---------TPIQKQAIPVFL--EKRDVL- 177 (593)
T ss_pred ccccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCC---------Ccccchhhhhhh--cccceE-
Confidence 344677888999999999999999998 4689999999999999999 999999999999 999999
Q ss_pred ccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh--cCCCcEEEEEECCCCHHHH
Q psy10677 189 VLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS--RTMRIRHACLYGGTSKMYQ 266 (317)
Q Consensus 189 ~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~--~~~~~~~~~~~gg~~~~~~ 266 (317)
.|||||||||+||++|++++|..........|.+++|+.||||||.|+++++.++. .+++++++......-..+.
T Consensus 178 ---AcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk 254 (593)
T KOG0344|consen 178 ---ACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQK 254 (593)
T ss_pred ---EeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhc
Confidence 99999999999999999999987654334568999999999999999999999999 7777777666544322221
Q ss_pred HH----HccCcEEECcHHHHHHHhcCC-------CCCCCCchhHHHhhhc-CCcHHH
Q psy10677 267 VI----LLRILTSATNTSLGIYLQQND-------AHSPCLSVWRRLQDIL-GLTEET 311 (317)
Q Consensus 267 ~~----~~~~ilv~TP~~l~~~l~~~~-------~~~~~lde~d~l~~~~-gf~~~~ 311 (317)
.. ....++|+||.|+..++..+. +..+++||||++++ - +|.++.
T Consensus 255 ~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe-~~~f~~Ql 310 (593)
T KOG0344|consen 255 PAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFE-PEFFVEQL 310 (593)
T ss_pred cchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhC-hhhHHHHH
Confidence 11 122289999999999999873 55778899999999 5 665543
No 34
>KOG4284|consensus
Probab=99.93 E-value=1.1e-26 Score=221.66 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=147.6
Q ss_pred cCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHH
Q psy10677 127 GQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYIL 206 (317)
Q Consensus 127 g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~l 206 (317)
++--|.-..+|+++-|...++..|+..+|..| |+||..|||.++ .+.|+| ++|..|+|||+.|.+
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~p---------tkiQaaAIP~~~--~kmDli----VQaKSGTGKTlVfsv 81 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALP---------TKIQAAAIPAIF--SKMDLI----VQAKSGTGKTLVFSV 81 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCC---------Cchhhhhhhhhh--cccceE----EEecCCCCceEEEEe
Confidence 33344555799999999999999999999999 999999999999 999999 999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC--cEEECcHHHHH
Q psy10677 207 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI--LTSATNTSLGI 283 (317)
Q Consensus 207 p~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~ 283 (317)
.+++.+... ...++++|++||||+|.||.+.+.+++..+ |+++.+.+||++.......++. |+|||||||..
T Consensus 82 ~av~sl~~~-----~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~q 156 (980)
T KOG4284|consen 82 LAVESLDSR-----SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQ 156 (980)
T ss_pred eeehhcCcc-----cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHH
Confidence 999888753 568999999999999999999999999854 8999999999999988888877 99999999999
Q ss_pred HHhcC-----CCCCCCCchhHHHhhhcCCcHHH
Q psy10677 284 YLQQN-----DAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 284 ~l~~~-----~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
+++.+ .++|.+|||||+|++.-.|.++.
T Consensus 157 L~el~~~n~s~vrlfVLDEADkL~~t~sfq~~I 189 (980)
T KOG4284|consen 157 LVELGAMNMSHVRLFVLDEADKLMDTESFQDDI 189 (980)
T ss_pred HHHhcCCCccceeEEEeccHHhhhchhhHHHHH
Confidence 88875 67788999999999966666554
No 35
>KOG0332|consensus
Probab=99.92 E-value=9.2e-26 Score=203.80 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=142.5
Q ss_pred CCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHH
Q psy10677 132 KPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYH 211 (317)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~ 211 (317)
..+++|++|+|.|+++++|..++|.+| +.||..|+|.++....+++| ++|.+|+|||.||.|.+|.+
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kP---------skIQe~aLPlll~~Pp~nlI----aQsqsGtGKTaaFvL~MLsr 153 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKP---------SKIQETALPLLLAEPPQNLI----AQSQSGTGKTAAFVLTMLSR 153 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCc---------chHHHhhcchhhcCCchhhh----hhhcCCCchhHHHHHHHHHh
Confidence 446899999999999999999999999 99999999999977788999 99999999999999999999
Q ss_pred HHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc----
Q psy10677 212 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ---- 287 (317)
Q Consensus 212 l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~---- 287 (317)
+... ...|+++.|+||||||.|+.+++.+.++..++++....-|.....-......|+|||||.+.|++..
T Consensus 154 vd~~-----~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~i 228 (477)
T KOG0332|consen 154 VDPD-----VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCI 228 (477)
T ss_pred cCcc-----ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhh
Confidence 8764 3579999999999999999999999999999999888777643333333344999999999999887
Q ss_pred --CCCCCCCCchhHHHhhhcCCcHHH
Q psy10677 288 --NDAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 288 --~~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
..++..++||||.|++..||.++-
T Consensus 229 d~~kikvfVlDEAD~Mi~tqG~~D~S 254 (477)
T KOG0332|consen 229 DLEKIKVFVLDEADVMIDTQGFQDQS 254 (477)
T ss_pred ChhhceEEEecchhhhhhcccccccc
Confidence 467788999999999999997653
No 36
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.92 E-value=8.9e-25 Score=189.62 Aligned_cols=157 Identities=25% Similarity=0.357 Sum_probs=140.5
Q ss_pred ccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCC
Q psy10677 137 LDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMP 216 (317)
Q Consensus 137 f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~ 216 (317)
|+++++++.+.+.|.+.|++.| +++|.++|+.++ +|+|++ ++||||+|||++|++|+++++....
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~---------~~~Q~~~~~~~~--~~~~~l----i~~~TG~GKT~~~~~~~l~~~~~~~ 65 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKP---------TPIQARAIPPLL--SGRDVI----GQAQTGSGKTAAFLIPILEKLDPSP 65 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--cCCcEE----EECCCCCcHHHHHHHHHHHHHHhhc
Confidence 7899999999999999999999 999999999999 999999 9999999999999999999988752
Q ss_pred CCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-----
Q psy10677 217 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN----- 288 (317)
Q Consensus 217 ~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~----- 288 (317)
...+++++|++||++|+.|+.+.++.+....++++..++|+.+..+....+.. ++|+||+++.+++..+
T Consensus 66 ---~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~ 142 (203)
T cd00268 66 ---KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLS 142 (203)
T ss_pred ---ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChh
Confidence 13579999999999999999999999998889999999999998777766652 8999999999998876
Q ss_pred CCCCCCCchhHHHhhhcCCcHHHH
Q psy10677 289 DAHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 289 ~~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
.+++.++||+|.+.+ .+|.....
T Consensus 143 ~l~~lIvDE~h~~~~-~~~~~~~~ 165 (203)
T cd00268 143 KVKYLVLDEADRMLD-MGFEDQIR 165 (203)
T ss_pred hCCEEEEeChHHhhc-cChHHHHH
Confidence 466788999999997 77765544
No 37
>KOG0329|consensus
Probab=99.92 E-value=8.1e-26 Score=195.19 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=148.3
Q ss_pred eecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 125 LIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 125 ~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..|+.+.-.-+-|.|+-|.|++++++-..||++| +.+|.++||... -|.||+ ++|.+|.|||..|
T Consensus 32 ~kgsyv~ihssgfrdfllkpellraivdcgfehp---------sevqhecipqai--lgmdvl----cqaksgmgktavf 96 (387)
T KOG0329|consen 32 KKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHP---------SEVQHECIPQAI--LGMDVL----CQAKSGMGKTAVF 96 (387)
T ss_pred ccCcEEEEeccchhhhhcCHHHHHHHHhccCCCc---------hHhhhhhhhHHh--hcchhh----eecccCCCceeee
Confidence 3455544344568999999999999999999999 999999999999 999999 9999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHH
Q psy10677 205 ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTS 280 (317)
Q Consensus 205 ~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~ 280 (317)
++..|+.+... .....+|++|.|||||-||.++...|++++ ++++++.+||.+.....+.+++ |+||||||
T Consensus 97 vl~tlqqiepv-----~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGr 171 (387)
T KOG0329|consen 97 VLATLQQIEPV-----DGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGR 171 (387)
T ss_pred ehhhhhhcCCC-----CCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHH
Confidence 99999988653 246789999999999999999999999988 7999999999999888887777 99999999
Q ss_pred HHHHHhcCCCCCC-----CCchhHHHhhhcCCcHHHHhhc
Q psy10677 281 LGIYLQQNDAHSP-----CLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 281 l~~~l~~~~~~~~-----~lde~d~l~~~~gf~~~~~~~~ 315 (317)
++.+..++.+++. +|||+|+|++.+.+.-|..+.+
T Consensus 172 ilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEif 211 (387)
T KOG0329|consen 172 ILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIF 211 (387)
T ss_pred HHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHh
Confidence 9999999876654 6789999998766655554443
No 38
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.92 E-value=4.2e-25 Score=224.72 Aligned_cols=141 Identities=13% Similarity=0.107 Sum_probs=122.2
Q ss_pred CCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCC
Q psy10677 141 NIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE 220 (317)
Q Consensus 141 ~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~ 220 (317)
.|++.+.++|++.||..| |++|.+|||.++ +|+|++ ++||||||||+||++|+++.+...
T Consensus 20 ~l~~~l~~~L~~~g~~~p---------~~~Q~~ai~~il--~G~nvv----v~apTGSGKTla~~LPiL~~l~~~----- 79 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRP---------WQHQARAAELAH--AGRHVV----VATGTASGKSLAYQLPVLSALADD----- 79 (742)
T ss_pred cCCHHHHHHHHHcCCCcC---------CHHHHHHHHHHH--CCCCEE----EECCCCCcHHHHHHHHHHHHHhhC-----
Confidence 389999999999999999 999999999999 999999 999999999999999999999753
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc--cCcEEECcHHHHHHHh---------cCC
Q psy10677 221 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL--RILTSATNTSLGIYLQ---------QND 289 (317)
Q Consensus 221 ~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~--~~ilv~TP~~l~~~l~---------~~~ 289 (317)
.++++|||+||||||.|+.+.++++. ..++++..+.|+++..++.... .+|+|+||++|...+. -+.
T Consensus 80 -~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~ 157 (742)
T TIGR03817 80 -PRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRR 157 (742)
T ss_pred -CCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhc
Confidence 36899999999999999999999997 4578998888888865543222 2399999999874322 247
Q ss_pred CCCCCCchhHHHhh
Q psy10677 290 AHSPCLSVWRRLQD 303 (317)
Q Consensus 290 ~~~~~lde~d~l~~ 303 (317)
+++.++||||+|.+
T Consensus 158 l~~vViDEah~~~g 171 (742)
T TIGR03817 158 LRYVVIDECHSYRG 171 (742)
T ss_pred CCEEEEeChhhccC
Confidence 89999999999977
No 39
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=5.1e-23 Score=207.21 Aligned_cols=146 Identities=11% Similarity=0.060 Sum_probs=127.8
Q ss_pred cCCCCChhhhcccC-----cCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 138 DETNIPSYILGPMK-----PKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 138 ~~~~l~~~l~~~l~-----~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+.+.+.+++.+.+. ..||..| -.++|+|.+++|.++ .++|++ +.|+||||||+||++|++..+
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p------~~~tp~qvQ~I~~i~--l~~gvI----AeaqTGeGKTLAf~LP~l~~a 132 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQ------WDMVPYDVQILGAIA--MHKGFI----TEMQTGEGKTLTAVMPLYLNA 132 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCC------CCCChHHHHHhhhhh--cCCCeE----EEeCCCCChHHHHHHHHHHHH
Confidence 55678888887776 5788777 345999999999999 999999 999999999999999999988
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHH-HHHHhcCC-
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSL-GIYLQQND- 289 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l-~~~l~~~~- 289 (317)
... ..++||+||+|||.|+.+++..+.+++|+++.+++||.+..++...+.. |+||||||| .|+++.+.
T Consensus 133 L~g--------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~ 204 (970)
T PRK12899 133 LTG--------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSI 204 (970)
T ss_pred hhc--------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCC
Confidence 642 1389999999999999999999999999999999999999988876644 999999999 99999873
Q ss_pred -----------CCCCCCchhHHHhh
Q psy10677 290 -----------AHSPCLSVWRRLQD 303 (317)
Q Consensus 290 -----------~~~~~lde~d~l~~ 303 (317)
+++.+|||||+||-
T Consensus 205 ~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 205 ATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred CcCHHHhhcccccEEEEechhhhhh
Confidence 34778999999985
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=99.89 E-value=3e-23 Score=212.28 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=130.0
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccc-cccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTI-PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~-~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.|++++||+.+++++++.||..| +|+|.+|++. ++ +|+|++ ++||||||||++|.+|++.++..
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l---------~p~Q~~ai~~~~~--~g~nvl----v~APTGSGKTlia~lail~~l~~ 66 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEEL---------YPPQAEAVEAGLL--DGKNLL----AAIPTASGKTLIAELAMLKAIAR 66 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcC---------CHHHHHHHHHHHh--CCCcEE----EECCCcchHHHHHHHHHHHHHhc
Confidence 68999999999999999999999 9999999998 67 999999 99999999999999999999852
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc-----CC
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ-----ND 289 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~-----~~ 289 (317)
+.++||++|||+||.|+++.++.+.. .++++..++|+.+.......-.+|+||||+++..++.. +.
T Consensus 67 --------~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~ 137 (737)
T PRK02362 67 --------GGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDD 137 (737)
T ss_pred --------CCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhh
Confidence 56899999999999999999998765 48999999999876554333345999999999988875 36
Q ss_pred CCCCCCchhHHHhhhcCCcH
Q psy10677 290 AHSPCLSVWRRLQDILGLTE 309 (317)
Q Consensus 290 ~~~~~lde~d~l~~~~gf~~ 309 (317)
+.+.++||+|.+.+ .++.+
T Consensus 138 v~lvViDE~H~l~d-~~rg~ 156 (737)
T PRK02362 138 ITCVVVDEVHLIDS-ANRGP 156 (737)
T ss_pred cCEEEEECccccCC-CcchH
Confidence 78999999999987 55543
No 41
>PRK00254 ski2-like helicase; Provisional
Probab=99.87 E-value=1.8e-22 Score=206.10 Aligned_cols=150 Identities=14% Similarity=0.132 Sum_probs=130.4
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccc-cccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTI-PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~-~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+|+++++++.+.+.|++.||..| +|+|.+|++. ++ +|+|++ ++||||||||++|.+|++.++..
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l---------~~~Q~~ai~~~~~--~g~nvl----v~apTGsGKT~~~~l~il~~l~~ 66 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEEL---------YPPQAEALKSGVL--EGKNLV----LAIPTASGKTLVAEIVMVNKLLR 66 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCC---------CHHHHHHHHHHHh--CCCcEE----EECCCCcHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999 9999999996 77 999999 99999999999999999999874
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc-----CC
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ-----ND 289 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~-----~~ 289 (317)
. +.++|||+||++||.|+++.++.+.+ .++++..++|+.+...+...-.+|+|+||+++..++.. +.
T Consensus 67 ~-------~~~~l~l~P~~aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~ 138 (720)
T PRK00254 67 E-------GGKAVYLVPLKALAEEKYREFKDWEK-LGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKD 138 (720)
T ss_pred c-------CCeEEEEeChHHHHHHHHHHHHHHhh-cCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhc
Confidence 2 56999999999999999999998754 68999999999886544333345999999999888775 36
Q ss_pred CCCCCCchhHHHhhhcCCcH
Q psy10677 290 AHSPCLSVWRRLQDILGLTE 309 (317)
Q Consensus 290 ~~~~~lde~d~l~~~~gf~~ 309 (317)
+.+.++||+|.+.+ .++..
T Consensus 139 l~lvViDE~H~l~~-~~rg~ 157 (720)
T PRK00254 139 VKLVVADEIHLIGS-YDRGA 157 (720)
T ss_pred CCEEEEcCcCccCC-ccchH
Confidence 88999999999887 55543
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.87 E-value=2.2e-22 Score=208.51 Aligned_cols=146 Identities=16% Similarity=0.191 Sum_probs=121.3
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCC-C
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLE-E 220 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~-~ 220 (317)
|++.+.+.+++ +|..| ||+|.+|||.++ +|+|++ ++||||||||+||++|+++++....... .
T Consensus 18 l~~~v~~~~~~-~~~~~---------tpiQ~~Ai~~il--~g~nvl----i~APTGSGKTlaa~Lpil~~l~~~~~~~~~ 81 (876)
T PRK13767 18 LRPYVREWFKE-KFGTF---------TPPQRYAIPLIH--EGKNVL----ISSPTGSGKTLAAFLAIIDELFRLGREGEL 81 (876)
T ss_pred cCHHHHHHHHH-ccCCC---------CHHHHHHHHHHH--cCCCEE----EECCCCCcHHHHHHHHHHHHHHhhccccCC
Confidence 67777777665 79999 999999999999 999999 9999999999999999999997643211 1
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHH-------Hh----cCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHH
Q psy10677 221 GDGPIALVLAPTRELAQQIQAVISI-------FS----RTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYL 285 (317)
Q Consensus 221 ~~~~~alil~PtreLa~Qi~~~~~~-------l~----~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l 285 (317)
..++++||++|||+||.|+++.+.. +. ... ++++.+.+|+++..++...+++ |+||||++|..++
T Consensus 82 ~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll 161 (876)
T PRK13767 82 EDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILL 161 (876)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHh
Confidence 3578999999999999999986653 22 233 7899999999998887766653 9999999998877
Q ss_pred hc-------CCCCCCCCchhHHHhh
Q psy10677 286 QQ-------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 286 ~~-------~~~~~~~lde~d~l~~ 303 (317)
.. +.++++++||+|.+++
T Consensus 162 ~~~~~~~~l~~l~~VVIDE~H~l~~ 186 (876)
T PRK13767 162 NSPKFREKLRTVKWVIVDEIHSLAE 186 (876)
T ss_pred cChhHHHHHhcCCEEEEechhhhcc
Confidence 54 3678999999999987
No 43
>PRK09401 reverse gyrase; Reviewed
Probab=99.85 E-value=2.5e-21 Score=204.04 Aligned_cols=129 Identities=18% Similarity=0.133 Sum_probs=107.9
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
|++|..++|.++ .|+|++ ++||||||||+ |.+|++..+.. .++++|||+||||||.|+++.++.++
T Consensus 82 t~iQ~~~i~~il--~g~dv~----i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 82 WSLQRTWAKRLL--LGESFA----IIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cHHHHHHHHHHH--CCCcEE----EEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 999999999999 999999 99999999995 66777766643 37899999999999999999999999
Q ss_pred cCCCcEEEEEECCCC-----HHHHHHHcc----CcEEECcHHHHHHHhc---CCCCCCCCchhHHHhh----------hc
Q psy10677 248 RTMRIRHACLYGGTS-----KMYQVILLR----ILTSATNTSLGIYLQQ---NDAHSPCLSVWRRLQD----------IL 305 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~-----~~~~~~~~~----~ilv~TP~~l~~~l~~---~~~~~~~lde~d~l~~----------~~ 305 (317)
...++++..++||.+ ..++...+. +|+|||||+|.++++. ..+++.++||||+|++ .+
T Consensus 148 ~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~l 227 (1176)
T PRK09401 148 EKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLL 227 (1176)
T ss_pred hhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhC
Confidence 988999888887764 223333332 4999999999988653 4588999999999985 48
Q ss_pred CCcHH
Q psy10677 306 GLTEE 310 (317)
Q Consensus 306 gf~~~ 310 (317)
||.++
T Consensus 228 GF~~~ 232 (1176)
T PRK09401 228 GFSEE 232 (1176)
T ss_pred CCCHH
Confidence 99754
No 44
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.85 E-value=2.6e-21 Score=204.06 Aligned_cols=144 Identities=14% Similarity=0.056 Sum_probs=117.9
Q ss_pred hhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCc
Q psy10677 145 YILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGP 224 (317)
Q Consensus 145 ~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~ 224 (317)
++.+.+.+.....| +++|..++|.++ .|+|++ ++||||||||+ |.+|++..+.. .++
T Consensus 66 ~f~~~f~~~~g~~p---------~~iQ~~~i~~il--~G~d~v----i~ApTGsGKT~-f~l~~~~~l~~-------~g~ 122 (1171)
T TIGR01054 66 EFEEFFKKAVGSEP---------WSIQKMWAKRVL--RGDSFA----IIAPTGVGKTT-FGLAMSLFLAK-------KGK 122 (1171)
T ss_pred HHHHHHHHhcCCCC---------cHHHHHHHHHHh--CCCeEE----EECCCCCCHHH-HHHHHHHHHHh-------cCC
Confidence 34445555434469 999999999999 999999 99999999996 77888877653 268
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcCCCcEEE---EEECCCCHHHHHHH---c----cCcEEECcHHHHHHHhc-C-CCCC
Q psy10677 225 IALVLAPTRELAQQIQAVISIFSRTMRIRHA---CLYGGTSKMYQVIL---L----RILTSATNTSLGIYLQQ-N-DAHS 292 (317)
Q Consensus 225 ~alil~PtreLa~Qi~~~~~~l~~~~~~~~~---~~~gg~~~~~~~~~---~----~~ilv~TP~~l~~~l~~-~-~~~~ 292 (317)
++|||+||||||.|+++.++++...+++++. +++||.+..++... + .+|+|||||+|.+++.. . .+++
T Consensus 123 ~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~ 202 (1171)
T TIGR01054 123 RCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDF 202 (1171)
T ss_pred eEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCE
Confidence 9999999999999999999999988776654 46799988765432 2 23899999999988776 2 6889
Q ss_pred CCCchhHHHhhh----------cCCcHHH
Q psy10677 293 PCLSVWRRLQDI----------LGLTEET 311 (317)
Q Consensus 293 ~~lde~d~l~~~----------~gf~~~~ 311 (317)
.++||||+|++. +||.++.
T Consensus 203 iVvDEaD~~L~~~k~vd~il~llGF~~e~ 231 (1171)
T TIGR01054 203 IFVDDVDALLKASKNVDKLLKLLGFSEEL 231 (1171)
T ss_pred EEEeChHhhhhccccHHHHHHHcCCCHHH
Confidence 999999999983 8999864
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.84 E-value=4.2e-21 Score=192.94 Aligned_cols=146 Identities=19% Similarity=0.173 Sum_probs=134.1
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCC
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEG 221 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~ 221 (317)
|++.+.+++++. |+.| ||.|.+|||.+. +|+|++ ++||||||||+|.+||++..|.+.......
T Consensus 8 l~~~v~~~~~~~-~~~~---------t~~Q~~a~~~i~--~G~nvL----iiAPTGsGKTeAAfLpil~~l~~~~~~~~~ 71 (814)
T COG1201 8 LDPRVREWFKRK-FTSL---------TPPQRYAIPEIH--SGENVL----IIAPTGSGKTEAAFLPVINELLSLGKGKLE 71 (814)
T ss_pred cCHHHHHHHHHh-cCCC---------CHHHHHHHHHHh--CCCceE----EEcCCCCChHHHHHHHHHHHHHhccCCCCC
Confidence 889999999998 9999 999999999999 999999 999999999999999999999987433345
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhc-------CCCC
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQ-------NDAH 291 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~-------~~~~ 291 (317)
.+..+|+++|.|+|...+.+.++.+++.+|+.+..-+|+++..+.....++ |+|+||+.|.-++.. +++.
T Consensus 72 ~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr 151 (814)
T COG1201 72 DGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVR 151 (814)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCc
Confidence 689999999999999999999999999999999999999999888888777 999999999988877 4888
Q ss_pred CCCCchhHHHhh
Q psy10677 292 SPCLSVWRRLQD 303 (317)
Q Consensus 292 ~~~lde~d~l~~ 303 (317)
+.++||.+.+.+
T Consensus 152 ~VIVDEiHel~~ 163 (814)
T COG1201 152 YVIVDEIHALAE 163 (814)
T ss_pred EEEeehhhhhhc
Confidence 999999988765
No 46
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.84 E-value=1.1e-20 Score=158.74 Aligned_cols=129 Identities=22% Similarity=0.219 Sum_probs=111.7
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
||+|.++|+.+. +|+|++ +.||||||||++|++|++..+.+. ...+++|++|+++|+.|+++.+.++.
T Consensus 1 t~~Q~~~~~~i~--~~~~~l----i~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~ 68 (169)
T PF00270_consen 1 TPLQQEAIEAII--SGKNVL----ISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFF 68 (169)
T ss_dssp -HHHHHHHHHHH--TTSEEE----EECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHH--cCCCEE----EECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccc
Confidence 789999999999 999999 999999999999999999998864 23599999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHH-HHHHHc---cCcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcH
Q psy10677 248 RTMRIRHACLYGGTSKM-YQVILL---RILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTE 309 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~-~~~~~~---~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~ 309 (317)
...++++..++||.+.. .....+ ..|+|+||.++.+++..+ .+++.++||+|.+.+ .++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~-~~~~~ 138 (169)
T PF00270_consen 69 SNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSD-ETFRA 138 (169)
T ss_dssp TTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHH-TTHHH
T ss_pred cccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCccccccc-ccHHH
Confidence 98889999999999865 444444 339999999999999873 477889999999999 45544
No 47
>PRK01172 ski2-like helicase; Provisional
Probab=99.84 E-value=6.9e-21 Score=193.36 Aligned_cols=147 Identities=11% Similarity=0.052 Sum_probs=127.0
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
.|++++|++.+++.+.+.+|. + +++|.++++.+. +|+|++ ++||||||||++|.+++++.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l---------~~~Q~~ai~~l~--~~~nvl----v~apTGSGKTl~a~lail~~l~~- 64 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-L---------YDHQRMAIEQLR--KGENVI----VSVPTAAGKTLIAYSAIYETFLA- 64 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-C---------CHHHHHHHHHHh--cCCcEE----EECCCCchHHHHHHHHHHHHHHh-
Confidence 688999999999999999987 8 999999999999 999999 99999999999999999998763
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CC
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DA 290 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~ 290 (317)
+.++|+++||++||.|+++.++++. ..|+++...+|+.+.......-.+|+|+||+++..++.+. .+
T Consensus 65 -------~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v 136 (674)
T PRK01172 65 -------GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDV 136 (674)
T ss_pred -------CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhc
Confidence 4689999999999999999999875 3689999999988765443333459999999998887653 67
Q ss_pred CCCCCchhHHHhhhcCCc
Q psy10677 291 HSPCLSVWRRLQDILGLT 308 (317)
Q Consensus 291 ~~~~lde~d~l~~~~gf~ 308 (317)
++.++||+|.+.| .++.
T Consensus 137 ~lvViDEaH~l~d-~~rg 153 (674)
T PRK01172 137 GLIVADEIHIIGD-EDRG 153 (674)
T ss_pred CEEEEecchhccC-CCcc
Confidence 8999999999877 5544
No 48
>PRK14701 reverse gyrase; Provisional
Probab=99.83 E-value=6.1e-21 Score=205.25 Aligned_cols=146 Identities=15% Similarity=0.050 Sum_probs=120.4
Q ss_pred hhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCC
Q psy10677 144 SYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGD 222 (317)
Q Consensus 144 ~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~ 222 (317)
.++.+.+++ .|| .| |++|.++||.++ +|+|++ ++||||||||++++++.+.... .
T Consensus 66 ~~~~~~f~~~~G~-~p---------t~iQ~~~i~~il--~G~d~l----i~APTGsGKTl~~~~~al~~~~--------~ 121 (1638)
T PRK14701 66 EEFEEFFEKITGF-EF---------WSIQKTWAKRIL--RGKSFS----IVAPTGMGKSTFGAFIALFLAL--------K 121 (1638)
T ss_pred HHHHHHHHHhhCC-CC---------CHHHHHHHHHHH--cCCCEE----EEEcCCCCHHHHHHHHHHHHHh--------c
Confidence 344555665 699 59 999999999999 999999 9999999999977766654422 3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCC--CcEEEEEECCCCHHHHHHH---cc----CcEEECcHHHHHHHhc---CCC
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTM--RIRHACLYGGTSKMYQVIL---LR----ILTSATNTSLGIYLQQ---NDA 290 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~--~~~~~~~~gg~~~~~~~~~---~~----~ilv~TP~~l~~~l~~---~~~ 290 (317)
++++|||+||+|||.|+++.++.++..+ ++++..++||.+..++... +. +|+|+|||+|.+++.. ..+
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i 201 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKF 201 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCC
Confidence 6799999999999999999999998865 5788889999998876533 22 3899999999987654 578
Q ss_pred CCCCCchhHHHhh----------hcCCcHHHHh
Q psy10677 291 HSPCLSVWRRLQD----------ILGLTEETCV 313 (317)
Q Consensus 291 ~~~~lde~d~l~~----------~~gf~~~~~~ 313 (317)
++.++||||+|++ .+||.++..+
T Consensus 202 ~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 202 DFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred CEEEEECceeccccccccchhhhcCCChHHHHH
Confidence 9999999998875 4799999875
No 49
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.81 E-value=5.9e-20 Score=185.55 Aligned_cols=135 Identities=8% Similarity=-0.118 Sum_probs=110.5
Q ss_pred CCCCCCCcCCCCCCCCchhhhhccccccccCc-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEE-Ec
Q psy10677 153 KTTNNENNHNKNKKCGDKESKNWTIPLNFQAK-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV-LA 230 (317)
Q Consensus 153 ~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~ali-l~ 230 (317)
.||+ | ||+|.+++|.++ .|+ +++ ++||||||||.+|.++++.. .. ....|++|| ++
T Consensus 12 ~G~~-P---------tpiQ~~~i~~il--~G~~~v~----~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~v 69 (844)
T TIGR02621 12 HGYS-P---------FPWQLSLAERFV--AGQPPES----CSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVV 69 (844)
T ss_pred hCCC-C---------CHHHHHHHHHHH--cCCCcce----EecCCCCcccHHHHHhhccc-cc-----cccccceEEEeC
Confidence 3788 9 999999999999 998 577 78999999999776555522 11 134688888 55
Q ss_pred CcHHHHHHHHHHHHHHhcCC-----------------------CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHH
Q psy10677 231 PTRELAQQIQAVISIFSRTM-----------------------RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIY 284 (317)
Q Consensus 231 PtreLa~Qi~~~~~~l~~~~-----------------------~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~ 284 (317)
||||||.|+++.++++++.+ ++++.+++||.+...|...++. |||||+ |+
T Consensus 70 PtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~ 145 (844)
T TIGR02621 70 NRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DM 145 (844)
T ss_pred chHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HH
Confidence 99999999999999999865 5999999999999999998876 899995 66
Q ss_pred HhcCC---------------------CCCCCCchhHHHhhhcCCcHHHHhhcc
Q psy10677 285 LQQND---------------------AHSPCLSVWRRLQDILGLTEETCVNVK 316 (317)
Q Consensus 285 l~~~~---------------------~~~~~lde~d~l~~~~gf~~~~~~~~~ 316 (317)
+.++. +.+.+||||| ++ +||.++..+.++
T Consensus 146 i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld-~gF~~~l~~Il~ 195 (844)
T TIGR02621 146 IGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LE-PAFQELLKQIMN 195 (844)
T ss_pred HcCCccccccccccccccchhhhhccceEEEEehhh--hc-cccHHHHHHHHH
Confidence 65554 4577899999 78 999998877654
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.80 E-value=6.6e-20 Score=184.45 Aligned_cols=130 Identities=16% Similarity=0.066 Sum_probs=111.2
Q ss_pred hcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC------cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCC
Q psy10677 147 LGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA------KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE 220 (317)
Q Consensus 147 ~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g------~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~ 220 (317)
...++..+| .| |++|.+||+.++ .+ .+.+ ++|+||||||++|++|++..+..
T Consensus 226 ~~~~~~lpf-~l---------t~~Q~~ai~~I~--~~~~~~~~~~~L----l~g~TGSGKT~va~l~il~~~~~------ 283 (630)
T TIGR00643 226 TKFLASLPF-KL---------TRAQKRVVKEIL--QDLKSDVPMNRL----LQGDVGSGKTLVAALAMLAAIEA------ 283 (630)
T ss_pred HHHHHhCCC-CC---------CHHHHHHHHHHH--HHhccCCCccEE----EECCCCCcHHHHHHHHHHHHHHc------
Confidence 344455677 47 999999999999 54 3578 99999999999999999988753
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHH---HHcc----CcEEECcHHHHHHHhcCCCCCC
Q psy10677 221 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV---ILLR----ILTSATNTSLGIYLQQNDAHSP 293 (317)
Q Consensus 221 ~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~---~~~~----~ilv~TP~~l~~~l~~~~~~~~ 293 (317)
+.+++|++||++||.|+++.++++...+++++++++||.+..+.. ..+. .|+||||+++.+.+.-..+.+.
T Consensus 284 --g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lv 361 (630)
T TIGR00643 284 --GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALV 361 (630)
T ss_pred --CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceE
Confidence 679999999999999999999999998899999999999876533 3343 3899999999887777899999
Q ss_pred CCchhHH
Q psy10677 294 CLSVWRR 300 (317)
Q Consensus 294 ~lde~d~ 300 (317)
++||+|+
T Consensus 362 VIDEaH~ 368 (630)
T TIGR00643 362 IIDEQHR 368 (630)
T ss_pred EEechhh
Confidence 9999998
No 51
>KOG0328|consensus
Probab=99.80 E-value=1.9e-20 Score=164.15 Aligned_cols=117 Identities=25% Similarity=0.310 Sum_probs=109.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCC-chhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYE-KPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~-K~~~L~~ll~--------------------- 58 (317)
+||||+|.+|.++..+||.||+.|.+.+++ .+.+.|+|+|+-++.++ |+++|.+|..
T Consensus 205 ~~SATlp~eilemt~kfmtdpvrilvkrde-ltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLt 283 (400)
T KOG0328|consen 205 LVSATLPHEILEMTEKFMTDPVRILVKRDE-LTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLT 283 (400)
T ss_pred EEeccCcHHHHHHHHHhcCCceeEEEecCC-CchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHH
Confidence 589999999999999999999999999999 68899999999998766 9999999886
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|+| +||+|+.+||++ |||+|+ ..++.++||++|... +-+|
T Consensus 284 ekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv------~qVslviNYDLP~nr------e~YI 351 (400)
T KOG0328|consen 284 EKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV------QQVSLVINYDLPNNR------ELYI 351 (400)
T ss_pred HHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc------ceeEEEEecCCCccH------HHHh
Confidence 9999999 999999999999 999999 899999999999876 8999
Q ss_pred HHHHHHCCceeecCCC
Q psy10677 115 DSFRKEHNITLIGQNI 130 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~~ 130 (317)
|++++.++.+..|..+
T Consensus 352 HRIGRSGRFGRkGvai 367 (400)
T KOG0328|consen 352 HRIGRSGRFGRKGVAI 367 (400)
T ss_pred hhhccccccCCcceEE
Confidence 9999999998888765
No 52
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.80 E-value=6.7e-20 Score=185.69 Aligned_cols=122 Identities=18% Similarity=0.109 Sum_probs=106.8
Q ss_pred CCCchhhhhccccccccC------cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQA------KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI 239 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g------~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi 239 (317)
++|++|.+|++.+. .+ +|++ ++|+||||||++|++|++..+. .+.+++||+||++||.|+
T Consensus 261 ~lt~~Q~~ai~~I~--~d~~~~~~~~~L----l~~~TGSGKT~va~~~il~~~~--------~g~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 261 ELTGAQKRVVAEIL--ADLASPKPMNRL----LQGDVGSGKTVVAALAALAAIE--------AGYQAALMAPTEILAEQH 326 (681)
T ss_pred CCCHHHHHHHHHHH--HhhhccCCceEE----EECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEeccHHHHHHH
Confidence 35999999999999 65 4789 9999999999999999998875 368999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEECCCCHHHHHH---Hcc----CcEEECcHHHHHHHhcCCCCCCCCchhHHH
Q psy10677 240 QAVISIFSRTMRIRHACLYGGTSKMYQVI---LLR----ILTSATNTSLGIYLQQNDAHSPCLSVWRRL 301 (317)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~gg~~~~~~~~---~~~----~ilv~TP~~l~~~l~~~~~~~~~lde~d~l 301 (317)
++.++++.+.+++++.+++||.+..+... .+. +|+||||+++.+.+....+.+.++||+|++
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrf 395 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRF 395 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhh
Confidence 99999999999999999999998654433 332 289999999988777789999999999985
No 53
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.80 E-value=3.3e-19 Score=183.14 Aligned_cols=147 Identities=16% Similarity=0.083 Sum_probs=114.3
Q ss_pred cccC--CCCChhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 136 TLDE--TNIPSYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 136 ~f~~--~~l~~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
.|.. ++....+...+++ .||..+ +|+|.++|+.++ .|+|++ +++|||+|||+||+||++..
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sF---------Rp~Q~eaI~aiL--~GrDVL----VimPTGSGKSLcYQLPAL~~- 499 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSF---------RPNQREIINATM--SGYDVF----VLMPTGGGKSLTYQLPALIC- 499 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCC---------CHHHHHHHHHHH--cCCCEE----EEcCCCccHHHHHHHHHHHc-
Confidence 4554 3344556666655 488888 999999999999 999999 99999999999999999842
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc---------CcEEECcHHHH-
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR---------ILTSATNTSLG- 282 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~---------~ilv~TP~~l~- 282 (317)
+..+|||+|+++|+.++...+. . .+++++.+.|+.+..++...+. +||++||++|.
T Consensus 500 ----------~GiTLVISPLiSLmqDQV~~L~---~-~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~ 565 (1195)
T PLN03137 500 ----------PGITLVISPLVSLIQDQIMNLL---Q-ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAK 565 (1195)
T ss_pred ----------CCcEEEEeCHHHHHHHHHHHHH---h-CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhc
Confidence 3579999999999974433332 2 4899999999999887765442 28999999985
Q ss_pred -----HHHh----cCCCCCCCCchhHHHhhhcC--CcHHHHh
Q psy10677 283 -----IYLQ----QNDAHSPCLSVWRRLQDILG--LTEETCV 313 (317)
Q Consensus 283 -----~~l~----~~~~~~~~lde~d~l~~~~g--f~~~~~~ 313 (317)
..+. .+.+.+.++||||.+.+ .| |.++.+.
T Consensus 566 ~d~ll~~L~~L~~~~~LslIVIDEAHcVSq-WGhDFRpdYr~ 606 (1195)
T PLN03137 566 SDSLLRHLENLNSRGLLARFVIDEAHCVSQ-WGHDFRPDYQG 606 (1195)
T ss_pred chHHHHHHHhhhhccccceeccCcchhhhh-cccchHHHHHH
Confidence 2222 24588999999999999 88 6676543
No 54
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=2.1e-19 Score=175.33 Aligned_cols=127 Identities=17% Similarity=0.111 Sum_probs=103.7
Q ss_pred CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 153 KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 153 ~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
.||..| +|+|.++||.++ +|+|++ +++|||||||+||++|++.. +..+||++||
T Consensus 7 ~g~~~~---------r~~Q~~ai~~~l--~g~dvl----v~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~ 60 (470)
T TIGR00614 7 FGLSSF---------RPVQLEVINAVL--LGRDCF----VVMPTGGGKSLCYQLPALCS-----------DGITLVISPL 60 (470)
T ss_pred cCCCCC---------CHHHHHHHHHHH--cCCCEE----EEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecH
Confidence 477778 999999999999 999999 99999999999999999841 3579999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc-------cCcEEECcHHHH------HHH-hcCCCCCCCCchh
Q psy10677 233 RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL-------RILTSATNTSLG------IYL-QQNDAHSPCLSVW 298 (317)
Q Consensus 233 reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~-------~~ilv~TP~~l~------~~l-~~~~~~~~~lde~ 298 (317)
+||+.|+.+.+.. .++.+..+.|+.+..++...+ .+++++||+++. ..+ ..+.+.+.++|||
T Consensus 61 ~~L~~dq~~~l~~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEa 136 (470)
T TIGR00614 61 ISLMEDQVLQLKA----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEA 136 (470)
T ss_pred HHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCC
Confidence 9999998887764 378888888888766544322 128999999864 344 5678999999999
Q ss_pred HHHhhhcC--CcHH
Q psy10677 299 RRLQDILG--LTEE 310 (317)
Q Consensus 299 d~l~~~~g--f~~~ 310 (317)
|.+.+ .| |.++
T Consensus 137 H~i~~-~g~~fr~~ 149 (470)
T TIGR00614 137 HCISQ-WGHDFRPD 149 (470)
T ss_pred cccCc-cccccHHH
Confidence 99988 66 4444
No 55
>KOG0331|consensus
Probab=99.78 E-value=2.9e-20 Score=178.01 Aligned_cols=144 Identities=31% Similarity=0.452 Sum_probs=128.7
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCC-CCCCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSA-NLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~-~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
|||||||++|+.||..||++|..|.++.. .+.++++|.|.+..|++..|.+.|..+|+
T Consensus 276 m~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~ 355 (519)
T KOG0331|consen 276 MFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCD 355 (519)
T ss_pred EEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHH
Confidence 79999999999999999999999999865 55789999999999999888888888775
Q ss_pred ---------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCH
Q psy10677 59 ---------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTK 111 (317)
Q Consensus 59 ---------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~ 111 (317)
|||+++| .||+|+..|||| |||+|| .++..|+||++|... +
T Consensus 356 ~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi------~dV~lVInydfP~~v------E 423 (519)
T KOG0331|consen 356 ELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDV------PDVDLVINYDFPNNV------E 423 (519)
T ss_pred HHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCC------ccccEEEeCCCCCCH------H
Confidence 9999999 899999999999 999999 899999999999876 8
Q ss_pred HHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 112 EEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 112 ~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
+|||+..++.++...|.+. ++.+-.+..+...+.+.+++.+-..|
T Consensus 424 dYVHRiGRTGRa~~~G~A~--tfft~~~~~~a~~l~~~l~e~~q~v~ 468 (519)
T KOG0331|consen 424 DYVHRIGRTGRAGKKGTAI--TFFTSDNAKLARELIKVLREAGQTVP 468 (519)
T ss_pred HHHhhcCccccCCCCceEE--EEEeHHHHHHHHHHHHHHHHccCCCC
Confidence 9999999999988888765 55555677888999999988876666
No 56
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.76 E-value=9.5e-19 Score=180.75 Aligned_cols=135 Identities=16% Similarity=0.000 Sum_probs=110.5
Q ss_pred ChhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccC------cCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 143 PSYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQA------KKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 143 ~~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g------~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+..+.+.+.+ .+|. | |++|.+||+.++ .+ +|++ ++|+||||||.+|++|++..+..
T Consensus 437 ~~~~~~~~~~~~~f~-~---------T~~Q~~aI~~I~--~d~~~~~~~d~L----l~adTGsGKT~val~a~l~al~~- 499 (926)
T TIGR00580 437 DLEWQQEFEDSFPFE-E---------TPDQLKAIEEIK--ADMESPRPMDRL----VCGDVGFGKTEVAMRAAFKAVLD- 499 (926)
T ss_pred CHHHHHHHHHhCCCC-C---------CHHHHHHHHHHH--hhhcccCcCCEE----EECCCCccHHHHHHHHHHHHHHh-
Confidence 3455555544 4775 8 999999999999 54 7999 99999999999999999988753
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc-------CcEEECcHHHHHHHhcC
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR-------ILTSATNTSLGIYLQQN 288 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~-------~ilv~TP~~l~~~l~~~ 288 (317)
+.+++||+||++||.|+++.++++...+++++..++|+.+..++...+. +||||||..+...+.-+
T Consensus 500 -------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~ 572 (926)
T TIGR00580 500 -------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFK 572 (926)
T ss_pred -------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcc
Confidence 5799999999999999999999999888999999999988665544332 28999995544344456
Q ss_pred CCCCCCCchhHHH
Q psy10677 289 DAHSPCLSVWRRL 301 (317)
Q Consensus 289 ~~~~~~lde~d~l 301 (317)
++.+.++||+|++
T Consensus 573 ~L~llVIDEahrf 585 (926)
T TIGR00580 573 DLGLLIIDEEQRF 585 (926)
T ss_pred cCCEEEeeccccc
Confidence 8899999999984
No 57
>KOG0349|consensus
Probab=99.76 E-value=7.5e-19 Score=161.89 Aligned_cols=87 Identities=24% Similarity=0.268 Sum_probs=76.8
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCC---CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcCC-----CC
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTM---RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQND-----AH 291 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~---~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~~-----~~ 291 (317)
.|.++|+-|+||||.|.++++++|..++ .++..++.||.-...|...+++ |+||||||+.+++..+. .+
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 3789999999999999999888887765 5788899999999999999988 89999999999999974 45
Q ss_pred CCCCchhHHHhhhcCCcHH
Q psy10677 292 SPCLSVWRRLQDILGLTEE 310 (317)
Q Consensus 292 ~~~lde~d~l~~~~gf~~~ 310 (317)
|+++||||-+|. .|..+-
T Consensus 366 FlvlDead~lL~-qgy~d~ 383 (725)
T KOG0349|consen 366 FLVLDEADLLLG-QGYDDK 383 (725)
T ss_pred EEEecchhhhhh-cccHHH
Confidence 789999999999 777654
No 58
>KOG0336|consensus
Probab=99.75 E-value=3.7e-19 Score=162.91 Aligned_cols=144 Identities=21% Similarity=0.290 Sum_probs=131.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|-|||||+.|++||..||++|+.+.++.-++.+...|+|.++...+.+|.+....+..
T Consensus 403 mTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LS 482 (629)
T KOG0336|consen 403 MTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLS 482 (629)
T ss_pred eecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhcc
Confidence 5699999999999999999999999999998889999999977778889888776664
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
|||+.+| .|++|.++|||| +||+|+ .|+.+|.||++|..- ++++
T Consensus 483 Sd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv------~DiTHV~NyDFP~nI------eeYV 550 (629)
T KOG0336|consen 483 SDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDV------PDITHVYNYDFPRNI------EEYV 550 (629)
T ss_pred chhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCc------hhcceeeccCCCccH------HHHH
Confidence 9999999 999999999999 999999 999999999999876 8999
Q ss_pred HHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 115 DSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
|+.+++.+++..|..+ .+.+++|-....+|.+.|.+..-..|
T Consensus 551 HRvGrtGRaGr~G~si--s~lt~~D~~~a~eLI~ILe~aeQevP 592 (629)
T KOG0336|consen 551 HRVGRTGRAGRTGTSI--SFLTRNDWSMAEELIQILERAEQEVP 592 (629)
T ss_pred HHhcccccCCCCcceE--EEEehhhHHHHHHHHHHHHHhhhhCc
Confidence 9999999999999877 67788898899999999998877777
No 59
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.75 E-value=5.6e-18 Score=168.88 Aligned_cols=120 Identities=20% Similarity=0.120 Sum_probs=105.4
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|..+.+.+. .|+ + +.++||+|||++|.+|++..... |.+++|++||++||.|.++++..+.
T Consensus 58 ~~vQlig~~~l~--~G~--I----aem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 58 FDVQLIGGIALH--KGK--I----AEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred cchHHhhhhhhc--CCc--e----eeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 999999999998 887 8 89999999999999999644442 3469999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHH-HHHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSL-GIYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l-~~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
+.+|+++++++||.+..++...... |++|||++| .|++..+ .+++.++||+|+|+=
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 9999999999999998777766654 999999999 7887664 577899999999875
No 60
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.75 E-value=2.8e-18 Score=172.00 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=110.7
Q ss_pred CChhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCC
Q psy10677 142 IPSYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE 220 (317)
Q Consensus 142 l~~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~ 220 (317)
+++...+.|++ .||..| +|+|.++|+.++ .|+|++ +++|||||||+||++|++..
T Consensus 9 ~~~~~~~~l~~~fG~~~~---------r~~Q~~ai~~il--~g~dvl----v~apTGsGKTl~y~lpal~~--------- 64 (607)
T PRK11057 9 LESLAKQVLQETFGYQQF---------RPGQQEIIDAVL--SGRDCL----VVMPTGGGKSLCYQIPALVL--------- 64 (607)
T ss_pred chhHHHHHHHHHcCCCCC---------CHHHHHHHHHHH--cCCCEE----EEcCCCchHHHHHHHHHHHc---------
Confidence 44444445554 499999 999999999999 999999 99999999999999999842
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc---c----CcEEECcHHHH-----HHHhcC
Q psy10677 221 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL---R----ILTSATNTSLG-----IYLQQN 288 (317)
Q Consensus 221 ~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~---~----~ilv~TP~~l~-----~~l~~~ 288 (317)
...+||++||++|+.|+.+.+..+ ++.+.++.++.+..++.... . +++++||+++. +.+...
T Consensus 65 --~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~ 138 (607)
T PRK11057 65 --DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHW 138 (607)
T ss_pred --CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhC
Confidence 246999999999999998887754 67888888888776654332 1 27999999986 344556
Q ss_pred CCCCCCCchhHHHhhhcC--CcHHH
Q psy10677 289 DAHSPCLSVWRRLQDILG--LTEET 311 (317)
Q Consensus 289 ~~~~~~lde~d~l~~~~g--f~~~~ 311 (317)
.+.+.++||||.+.+ .| |.++.
T Consensus 139 ~l~~iVIDEaH~i~~-~G~~fr~~y 162 (607)
T PRK11057 139 NPALLAVDEAHCISQ-WGHDFRPEY 162 (607)
T ss_pred CCCEEEEeCcccccc-ccCcccHHH
Confidence 889999999999988 66 55554
No 61
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=6.2e-18 Score=167.48 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=102.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|..++|.++ .|+ + +.+.||||||++|.+|++.+.. .|++++|++||++||.|.++++..+.
T Consensus 105 ~~VQ~~~~~~ll--~G~--I----ae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 105 FDVQLMGGLALL--SGR--L----AEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred ChHHHHHHHHHh--CCC--e----eeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 999999999999 999 8 8999999999999999998754 36899999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhcC------------------------------CCCCCCC
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQN------------------------------DAHSPCL 295 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~~------------------------------~~~~~~l 295 (317)
+.+|+++++++||.+..+....... |++||++.+. |+|..+ .+++..+
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 9999999999999987655544433 9999999983 554433 3457788
Q ss_pred chhHHHh
Q psy10677 296 SVWRRLQ 302 (317)
Q Consensus 296 de~d~l~ 302 (317)
||+|.+|
T Consensus 249 DEvDSiL 255 (656)
T PRK12898 249 DEADSVL 255 (656)
T ss_pred eccccee
Confidence 9999765
No 62
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=6.5e-18 Score=170.56 Aligned_cols=120 Identities=11% Similarity=0.080 Sum_probs=102.9
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|..+++.++ +|+ + +.+.||+|||++|++|++..... |++++|++||++||.|.++.+..+.
T Consensus 80 ~~vQl~~~~~l~--~G~--I----aem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 80 YDVQLIGALVLH--EGN--I----AEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred chHHHHhHHHHc--CCc--e----eeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 999999999999 887 8 89999999999999999866653 7799999999999999999999999
Q ss_pred cCCCcEEEEEECCCC-HHHHHHHccC-cEEECcHHH-HHHHhc-----------CCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTS-KMYQVILLRI-LTSATNTSL-GIYLQQ-----------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~-~~~~~~~~~~-ilv~TP~~l-~~~l~~-----------~~~~~~~lde~d~l~~ 303 (317)
+.+|+++++++||.+ ..+....... |++||||++ .|+|.. ..+++.++||+|+|+=
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLi 213 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILL 213 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEecccccee
Confidence 999999999999999 4444433322 999999999 455554 3567899999999763
No 63
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.73 E-value=4.1e-18 Score=179.53 Aligned_cols=129 Identities=16% Similarity=-0.003 Sum_probs=108.4
Q ss_pred ccCcCCCCCCCcCCCCCCCCchhhhhccccccccC------cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCC
Q psy10677 149 PMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA------KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGD 222 (317)
Q Consensus 149 ~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g------~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~ 222 (317)
.....+| .| |++|.+|||.++ .+ +|++ ++|+||||||.+|+.+++..+. .
T Consensus 593 ~~~~~~~-~~---------T~~Q~~aI~~il--~d~~~~~~~d~L----l~a~TGsGKT~val~aa~~~~~--------~ 648 (1147)
T PRK10689 593 FCDSFPF-ET---------TPDQAQAINAVL--SDMCQPLAMDRL----VCGDVGFGKTEVAMRAAFLAVE--------N 648 (1147)
T ss_pred HHHhCCC-CC---------CHHHHHHHHHHH--HHhhcCCCCCEE----EEcCCCcCHHHHHHHHHHHHHH--------c
Confidence 3455567 47 999999999999 66 8999 9999999999999999877653 3
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc-------CcEEECcHHHHHHHhcCCCCCCCC
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR-------ILTSATNTSLGIYLQQNDAHSPCL 295 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~-------~ilv~TP~~l~~~l~~~~~~~~~l 295 (317)
+++++||+||++||.|+++.++++....++++.+++|+.+..++...+. +|+||||+.+...+..+++.+.++
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 6899999999999999999999988777899999999999887765442 389999976544344468899999
Q ss_pred chhHHH
Q psy10677 296 SVWRRL 301 (317)
Q Consensus 296 de~d~l 301 (317)
||+|++
T Consensus 729 DEahrf 734 (1147)
T PRK10689 729 DEEHRF 734 (1147)
T ss_pred echhhc
Confidence 999996
No 64
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.8e-17 Score=167.44 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=105.0
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|...-=.+. .|+ + +.++||+|||++|.+|++..+.. |..++|++||++||.|.++++..+.
T Consensus 84 ydvQliGg~~Lh--~G~--I----aem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 84 FDVQLIGGMVLH--EGN--I----AEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred chHHHhhhhhhc--cCc--c----ccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 888887765666 666 6 78999999999999999988763 3469999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHH-HHHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSL-GIYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l-~~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
+.+|+++.+++||.+..++...... |++||||+| .|+|..+ .+++.++||+|+||=
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI 216 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI 216 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh
Confidence 9999999999999998887776654 999999999 8998876 577899999999874
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.72 E-value=1.6e-17 Score=170.53 Aligned_cols=137 Identities=14% Similarity=0.171 Sum_probs=117.3
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCC
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEG 221 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~ 221 (317)
....+..++.+.|...+ .++|.+|+..+. +|+|++ ++++||||||.||++||++++.+++.
T Consensus 55 ~~~~l~~~l~~~g~~~l---------Y~HQ~~A~~~~~--~G~~vv----VtTgTgSGKTe~FllPIld~~l~~~~---- 115 (851)
T COG1205 55 RDESLKSALVKAGIERL---------YSHQVDALRLIR--EGRNVV----VTTGTGSGKTESFLLPILDHLLRDPS---- 115 (851)
T ss_pred hhhHHHHHHHHhccccc---------cHHHHHHHHHHH--CCCCEE----EECCCCCchhHHHHHHHHHHHhhCcC----
Confidence 44556777888888889 999999999999 999999 99999999999999999999998642
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcCCC--cEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhc---------
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISIFSRTMR--IRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQ--------- 287 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~l~~~~~--~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~--------- 287 (317)
-+||+|.||++||+.+.+.++++....+ +++...+|+++..+....+.+ ||++||.-|..++-.
T Consensus 116 --a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~ 193 (851)
T COG1205 116 --ARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLL 193 (851)
T ss_pred --ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHH
Confidence 3999999999999999999999999887 888999999998877544444 999999877764443
Q ss_pred CCCCCCCCchhH
Q psy10677 288 NDAHSPCLSVWR 299 (317)
Q Consensus 288 ~~~~~~~lde~d 299 (317)
..++++++||++
T Consensus 194 ~~Lk~lVvDElH 205 (851)
T COG1205 194 RNLKYLVVDELH 205 (851)
T ss_pred hcCcEEEEecce
Confidence 268899999863
No 66
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.4e-18 Score=167.97 Aligned_cols=118 Identities=25% Similarity=0.320 Sum_probs=107.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCC-CCCcCcEEEEEEccCCC-chhhhhhhcc--------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANL-AANPNIKQFVEICHEYE-KPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~-~~~~~i~q~~~~~~~~~-K~~~L~~ll~-------------------- 58 (317)
|||||||+.++++++.+|++|..|.++.... .+...|+|+|+.|+..+ |.++|.++++
T Consensus 210 lfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l 289 (513)
T COG0513 210 LFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEEL 289 (513)
T ss_pred EEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHH
Confidence 6999999999999999999999999985541 37899999999999876 9999999997
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
|||+|+| +|++|+.+|||| |||+|| .++++|+||++|... +.+
T Consensus 290 ~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi------~~v~~VinyD~p~~~------e~y 357 (513)
T COG0513 290 AESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDI------PDVSHVINYDLPLDP------EDY 357 (513)
T ss_pred HHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCc------cccceeEEccCCCCH------HHh
Confidence 9999999 999999999999 999999 899999999999765 899
Q ss_pred HHHHHHHCCceeecCCC
Q psy10677 114 IDSFRKEHNITLIGQNI 130 (317)
Q Consensus 114 i~~~~~~~~i~~~g~~~ 130 (317)
+|+++++.+++-.|..+
T Consensus 358 vHRiGRTgRaG~~G~ai 374 (513)
T COG0513 358 VHRIGRTGRAGRKGVAI 374 (513)
T ss_pred eeccCccccCCCCCeEE
Confidence 99999999988888654
No 67
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.70 E-value=2.5e-17 Score=165.09 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=106.9
Q ss_pred cCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEE
Q psy10677 150 MKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228 (317)
Q Consensus 150 l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~ali 228 (317)
|++ .||..+ +|+|.++|+.++ .|+|++ +++|||+|||+||++|++.+ +..++|
T Consensus 5 l~~~fg~~~f---------r~~Q~~~i~~il--~g~dvl----v~~PTG~GKTl~y~lpal~~-----------~g~~lV 58 (591)
T TIGR01389 5 LKRTFGYDDF---------RPGQEEIISHVL--DGRDVL----VVMPTGGGKSLCYQVPALLL-----------KGLTVV 58 (591)
T ss_pred HHHhcCCCCC---------CHHHHHHHHHHH--cCCCEE----EEcCCCccHhHHHHHHHHHc-----------CCcEEE
Confidence 443 588888 999999999999 999999 99999999999999999842 236899
Q ss_pred EcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc-------CcEEECcHHHH-----HHHhcCCCCCCCCc
Q psy10677 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR-------ILTSATNTSLG-----IYLQQNDAHSPCLS 296 (317)
Q Consensus 229 l~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~-------~ilv~TP~~l~-----~~l~~~~~~~~~ld 296 (317)
++|+++|+.|+.+.++.+ ++.+..+.|+.+..+....+. +++++||+++. ..+....+.+.++|
T Consensus 59 isPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViD 134 (591)
T TIGR01389 59 ISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVD 134 (591)
T ss_pred EcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEe
Confidence 999999999988887764 678888889888776554332 27999999985 34566789999999
Q ss_pred hhHHHhhhcC--CcHHH
Q psy10677 297 VWRRLQDILG--LTEET 311 (317)
Q Consensus 297 e~d~l~~~~g--f~~~~ 311 (317)
|||.+.+ .| |.++.
T Consensus 135 EaH~i~~-~g~~frp~y 150 (591)
T TIGR01389 135 EAHCVSQ-WGHDFRPEY 150 (591)
T ss_pred CCccccc-ccCccHHHH
Confidence 9999987 55 55544
No 68
>KOG0330|consensus
Probab=99.70 E-value=4.5e-18 Score=154.97 Aligned_cols=117 Identities=22% Similarity=0.281 Sum_probs=108.7
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|||||||+.|+++-+..+++|+.|.+...- .+.++++|+|++++...|...|..+++
T Consensus 240 LfsATMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~ 318 (476)
T KOG0330|consen 240 LFSATMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLAL 318 (476)
T ss_pred EEEeecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHH
Confidence 699999999999999999999999997665 788899999999999999999999997
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
|||+|+| .|++|...|||| |||+|+ ..+..|+||++|... .+|||
T Consensus 319 ~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDi------p~Vd~VVNyDiP~~s------kDYIH 386 (476)
T KOG0330|consen 319 LLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDI------PHVDVVVNYDIPTHS------KDYIH 386 (476)
T ss_pred HHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCC------CCceEEEecCCCCcH------HHHHH
Confidence 9999999 999999999999 999999 899999999999765 89999
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+.+++.+++..|..+
T Consensus 387 RvGRtaRaGrsG~~I 401 (476)
T KOG0330|consen 387 RVGRTARAGRSGKAI 401 (476)
T ss_pred HcccccccCCCcceE
Confidence 999999999888765
No 69
>KOG0335|consensus
Probab=99.70 E-value=9e-18 Score=158.65 Aligned_cols=143 Identities=27% Similarity=0.348 Sum_probs=127.4
Q ss_pred CcccCCChHHHHHHHHhcCC-CEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSD-PIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~-p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
|||||+|++++.++..|+.+ ++.+.|+..+ .+.++|.|.+.+|.+.+|...|.+++.
T Consensus 267 mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvE 345 (482)
T KOG0335|consen 267 LFSATFPKEIQRLAADFLKDNYIFLAVGRVG-STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVE 345 (482)
T ss_pred EEeccCChhhhhhHHHHhhccceEEEEeeec-cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEee
Confidence 79999999999999999996 8999999888 789999999999999999999998885
Q ss_pred ---------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccc
Q psy10677 59 ---------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNH 105 (317)
Q Consensus 59 ---------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~ 105 (317)
+||+.+| .|++|++++||| |||+|| .++.+|+||++|.+-
T Consensus 346 t~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi------~~V~hVInyDmP~d~- 418 (482)
T KOG0335|consen 346 TKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDI------PNVKHVINYDMPADI- 418 (482)
T ss_pred ccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCC------CCCceeEEeecCcch-
Confidence 9999998 999999999999 999999 899999999999864
Q ss_pred cCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 106 LQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 106 i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
++++|++.++.+..-.|... ++.+-.+.++.+.|.+.|.+.+-..|
T Consensus 419 -----d~YvHRIGRTGR~Gn~G~at--sf~n~~~~~i~~~L~~~l~ea~q~vP 464 (482)
T KOG0335|consen 419 -----DDYVHRIGRTGRVGNGGRAT--SFFNEKNQNIAKALVEILTEANQEVP 464 (482)
T ss_pred -----hhHHHhccccccCCCCceeE--EEeccccchhHHHHHHHHHHhcccCc
Confidence 79999999999988888765 23232345699999999999988888
No 70
>KOG0333|consensus
Probab=99.69 E-value=9e-18 Score=157.92 Aligned_cols=117 Identities=26% Similarity=0.379 Sum_probs=110.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|||||||+.|+.+|+.||.+|+.|.++..+ ...+.|+|.++.+.+++|+..|..++.
T Consensus 457 mftatm~p~verlar~ylr~pv~vtig~~g-k~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk 535 (673)
T KOG0333|consen 457 MFTATMPPAVERLARSYLRRPVVVTIGSAG-KPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAK 535 (673)
T ss_pred EEecCCChHHHHHHHHHhhCCeEEEeccCC-CCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHH
Confidence 799999999999999999999999999998 788899999999999999999998886
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
|||+.+| .||+|...|||| +||+|| .|+++|+||+++... +.+.|
T Consensus 536 ~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDI------pnVSlVinydmaksi------eDYtH 603 (673)
T KOG0333|consen 536 ILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDI------PNVSLVINYDMAKSI------EDYTH 603 (673)
T ss_pred HHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCC------CccceeeecchhhhH------HHHHH
Confidence 9999999 999999999999 999999 899999999998765 89999
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+++++.+++-.|..+
T Consensus 604 RIGRTgRAGk~Gtai 618 (673)
T KOG0333|consen 604 RIGRTGRAGKSGTAI 618 (673)
T ss_pred HhccccccccCceeE
Confidence 999999999999765
No 71
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.68 E-value=1.4e-16 Score=169.53 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=92.9
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCC-----CCCCCceEEEEcCcHHHHHHHHHHHHHHhc------------CCCcEE
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKL-----EEGDGPIALVLAPTRELAQQIQAVISIFSR------------TMRIRH 254 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~-----~~~~~~~alil~PtreLa~Qi~~~~~~l~~------------~~~~~~ 254 (317)
++||||||||+||.||+|+++...... ....++++|||+|||+|+.|+++.++.... ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 479999999999999999999865311 123468999999999999999999875321 247999
Q ss_pred EEEECCCCHHHHHHHcc---CcEEECcHHHHHHHhc------CCCCCCCCchhHHHhh
Q psy10677 255 ACLYGGTSKMYQVILLR---ILTSATNTSLGIYLQQ------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 255 ~~~~gg~~~~~~~~~~~---~ilv~TP~~l~~~l~~------~~~~~~~lde~d~l~~ 303 (317)
...+|+++..++...++ +|||+||++|..++.+ ++++++++||+|.|++
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g 138 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAG 138 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcc
Confidence 99999999998877665 3999999999988754 3678999999999997
No 72
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.67 E-value=2.7e-16 Score=157.75 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=96.3
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|..+.+.+. .| .+ +.++||+|||+||++|++.+... ++.++|++||++||.|..+++..+.
T Consensus 72 ydVQlig~l~l~--~G--~I----aem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~ 135 (762)
T TIGR03714 72 YDVQVLGAIVLH--QG--NI----AEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVY 135 (762)
T ss_pred cHHHHHHHHHhc--CC--ce----eEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHH
Confidence 888888877777 66 58 89999999999999998876653 4579999999999999999999999
Q ss_pred cCCCcEEEEEECCCC-----HHHHHHH-ccCcEEECcHHH-HHHHhc-----------CCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTS-----KMYQVIL-LRILTSATNTSL-GIYLQQ-----------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~-----~~~~~~~-~~~ilv~TP~~l-~~~l~~-----------~~~~~~~lde~d~l~~ 303 (317)
+.+|+++.++++|.. ....... -..|++|||++| .++|.. ..+++.++||||.||-
T Consensus 136 ~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 136 EWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred hhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 999999999887632 2222222 223999999999 465532 3677999999999965
No 73
>KOG0341|consensus
Probab=99.65 E-value=6.1e-18 Score=154.07 Aligned_cols=175 Identities=21% Similarity=0.194 Sum_probs=133.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|||||||+.++.+|+..|-.|++|+|++++ +++-+|-|.+.+|..+.|+-.|...|+
T Consensus 362 LFSATMP~KIQ~FAkSALVKPvtvNVGRAG-AAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEY 440 (610)
T KOG0341|consen 362 LFSATMPKKIQNFAKSALVKPVTVNVGRAG-AASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEY 440 (610)
T ss_pred eeeccccHHHHHHHHhhcccceEEeccccc-ccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHH
Confidence 799999999999999999999999999999 788899999989988889888888776
Q ss_pred ----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHH
Q psy10677 59 ----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDS 116 (317)
Q Consensus 59 ----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~ 116 (317)
|||++.| .||.|+-.|||| ++|+|+ .++.+|+||++|.+- +.++|+
T Consensus 441 LLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDF------p~iqHVINyDMP~eI------ENYVHR 508 (610)
T KOG0341|consen 441 LLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDF------PDIQHVINYDMPEEI------ENYVHR 508 (610)
T ss_pred HHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCC------ccchhhccCCChHHH------HHHHHH
Confidence 9999999 999999999999 999999 899999999999754 677777
Q ss_pred HHHHCCceeecCCCCCCcccccCCCCChhhhcccCc----CCCCCCCcCCCCCCCCchhhhhccccccc--cCcCccccc
Q psy10677 117 FRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKP----KTTNNENNHNKNKKCGDKESKNWTIPLNF--QAKKFISVL 190 (317)
Q Consensus 117 ~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~----~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~--~g~dvi~~~ 190 (317)
++++.+-+..|-+ ++|-+-+-....+-.|+. .+-..| .+++. .+..--
T Consensus 509 IGRTGRsg~~GiA-----TTfINK~~~esvLlDLK~LL~EakQ~vP------------------~~L~~L~~~~E~~--- 562 (610)
T KOG0341|consen 509 IGRTGRSGKTGIA-----TTFINKNQEESVLLDLKHLLQEAKQEVP------------------PVLAELAGPMEEE--- 562 (610)
T ss_pred hcccCCCCCccee-----eeeecccchHHHHHHHHHHHHHhhccCC------------------HHHHHhCCCcccc---
Confidence 7777766666633 577665555554444443 333333 33310 111111
Q ss_pred ceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 191 QKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 191 ~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
-.|.+|.-|-.||+-.+=++|...
T Consensus 563 -~~a~~~~~kGCayCgGLGHRItdC 586 (610)
T KOG0341|consen 563 -TIADAGGEKGCAYCGGLGHRITDC 586 (610)
T ss_pred -ccccCCCccccccccCCCcccccC
Confidence 235666778888887776666554
No 74
>KOG0326|consensus
Probab=99.64 E-value=3.7e-17 Score=145.71 Aligned_cols=123 Identities=16% Similarity=0.238 Sum_probs=109.1
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|||||+|-.|+.+.+++|++|..|++- ++ -+...|.|||-+|++++|+.+|..|+.
T Consensus 263 lySATFP~tVk~Fm~~~l~kPy~INLM-~e-Ltl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAk 340 (459)
T KOG0326|consen 263 LYSATFPLTVKGFMDRHLKKPYEINLM-EE-LTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAK 340 (459)
T ss_pred EEecccchhHHHHHHHhccCcceeehh-hh-hhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHH
Confidence 799999999999999999999999985 34 478899999999999999999998885
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+|+.|.| +||+|.++.||| .||+|+ ..+..|+||+.|... |.+.|
T Consensus 341 KITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDi------qavNvVINFDfpk~a------EtYLH 408 (459)
T KOG0326|consen 341 KITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDI------QAVNVVINFDFPKNA------ETYLH 408 (459)
T ss_pred HHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhccccc------ceeeEEEecCCCCCH------HHHHH
Confidence 9999999 999999999999 999999 888999999999866 89999
Q ss_pred HHHHHCCceeecCCCCCCcccccC
Q psy10677 116 SFRKEHNITLIGQNIPKPVKTLDE 139 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~~~~~~~f~~ 139 (317)
++++.++.+--|-++ .+.+|+|
T Consensus 409 RIGRsGRFGhlGlAI--nLityed 430 (459)
T KOG0326|consen 409 RIGRSGRFGHLGLAI--NLITYED 430 (459)
T ss_pred HccCCccCCCcceEE--EEEehhh
Confidence 999888877667655 3445555
No 75
>KOG0332|consensus
Probab=99.62 E-value=1.7e-16 Score=144.13 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=121.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC-CCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE-YEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~-~~K~~~L~~ll~--------------------- 58 (317)
|||||+.+.|..++.+.++||..+.+.+++ .+..+|+|+|..|+. .+|++.|..+..
T Consensus 269 LFSATf~e~V~~Fa~kivpn~n~i~Lk~ee-l~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~ 347 (477)
T KOG0332|consen 269 LFSATFVEKVAAFALKIVPNANVIILKREE-LALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLY 347 (477)
T ss_pred eeechhHHHHHHHHHHhcCCCceeeeehhh-ccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHH
Confidence 699999999999999999999999999888 588899999999985 569999998775
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|.- +||.|..+|||+ |||+|+ ..++.|+||++|....-..-.+.++
T Consensus 348 ~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv------~qVs~VvNydlP~~~~~~pD~etYl 421 (477)
T KOG0332|consen 348 EEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDV------AQVSVVVNYDLPVKYTGEPDYETYL 421 (477)
T ss_pred HHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccccc------ceEEEEEecCCccccCCCCCHHHHH
Confidence 9999985 999999999999 999999 8999999999997665555568999
Q ss_pred HHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCc
Q psy10677 115 DSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKP 152 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~ 152 (317)
|+++++++.+..|-.+ +|-+-+-+..+++.+++
T Consensus 422 HRiGRtGRFGkkG~a~-----n~v~~~~s~~~mn~iq~ 454 (477)
T KOG0332|consen 422 HRIGRTGRFGKKGLAI-----NLVDDKDSMNIMNKIQK 454 (477)
T ss_pred HHhcccccccccceEE-----EeecccCcHHHHHHHHH
Confidence 9999999998888664 46666666666666654
No 76
>KOG0344|consensus
Probab=99.60 E-value=1.5e-16 Score=151.84 Aligned_cols=160 Identities=22% Similarity=0.174 Sum_probs=140.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEcc-CCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICH-EYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~-~~~K~~~L~~ll~--------------------- 58 (317)
|||||+|..|+++++..+.+++.|.|+..+ .+..+|+|...+|- +..|+-+++.++.
T Consensus 326 ~FSat~~~~VEE~~~~i~~~~~~vivg~~~-sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~ 404 (593)
T KOG0344|consen 326 LFSATISVYVEEWAELIKSDLKRVIVGLRN-SANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLF 404 (593)
T ss_pred hhhccccHHHHHHHHHhhccceeEEEecch-hHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHH
Confidence 699999999999999999999999999888 67889999988886 4568888888875
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
+||+.+| +||.|++|+|+| +||+|+ +++..|+||+.|... -++
T Consensus 405 ~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf------~gvn~VInyD~p~s~------~sy 472 (593)
T KOG0344|consen 405 EELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDF------KGVNLVINYDFPQSD------LSY 472 (593)
T ss_pred HHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccc------cCcceEEecCCCchh------HHH
Confidence 8999998 999999999999 999999 999999999999866 799
Q ss_pred HHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhc
Q psy10677 114 IDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNW 175 (317)
Q Consensus 114 i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~i 175 (317)
+|+++++++..-.|.++ ++.+=.|+++-..+...+...|++.|++-+.+.+++..+..-+
T Consensus 473 ihrIGRtgRag~~g~Ai--tfytd~d~~~ir~iae~~~~sG~evpe~~m~~~k~~~~~kk~~ 532 (593)
T KOG0344|consen 473 IHRIGRTGRAGRSGKAI--TFYTDQDMPRIRSIAEVMEQSGCEVPEKIMGIKKLSRLKKKKL 532 (593)
T ss_pred HHHhhccCCCCCCcceE--EEeccccchhhhhHHHHHHHcCCcchHHHHhhhhhhhhhhhhh
Confidence 99999999988888776 4444467777788888899999999988888888888877744
No 77
>KOG0327|consensus
Probab=99.60 E-value=6.5e-16 Score=140.93 Aligned_cols=117 Identities=23% Similarity=0.306 Sum_probs=108.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|||||+|+++.+++++||++|+.|.++.++ .+.+.|+|+|..+..++|+.+|.++.+
T Consensus 205 l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~-ltl~gikq~~i~v~k~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L 283 (397)
T KOG0327|consen 205 LLSATMPSDVLEVTKKFMREPVRILVKKDE-LTLEGIKQFYINVEKEEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDKL 283 (397)
T ss_pred eecccCcHHHHHHHHHhccCceEEEecchh-hhhhheeeeeeeccccccccHHHHHHHhhhcceEEecchhhHHHHHHHH
Confidence 699999999999999999999999999988 578999999999999899999998886
Q ss_pred ---------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHH
Q psy10677 59 ---------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSF 117 (317)
Q Consensus 59 ---------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~ 117 (317)
+||+|.| +|++|..++||+ |||+|+ .+.+.++||++|... +.++|+.
T Consensus 284 ~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv------~~~slvinydlP~~~------~~yihR~ 351 (397)
T KOG0327|consen 284 RAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDV------QQVSLVVNYDLPARK------ENYIHRI 351 (397)
T ss_pred hhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccch------hhcceeeeeccccch------hhhhhhc
Confidence 9999999 999999999999 999999 899999999999765 8999999
Q ss_pred HHHCCceeecCCC
Q psy10677 118 RKEHNITLIGQNI 130 (317)
Q Consensus 118 ~~~~~i~~~g~~~ 130 (317)
.+..+.+..|..+
T Consensus 352 gr~gr~grkg~~i 364 (397)
T KOG0327|consen 352 GRAGRFGRKGVAI 364 (397)
T ss_pred ccccccCCCceee
Confidence 9998888888654
No 78
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.59 E-value=2.7e-15 Score=152.39 Aligned_cols=141 Identities=14% Similarity=0.117 Sum_probs=117.3
Q ss_pred CCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhc-cccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCC
Q psy10677 140 TNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNW-TIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKL 218 (317)
Q Consensus 140 ~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~i-p~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~ 218 (317)
..+++.+.+.++..|+... .+-|+.++ +.++ +|+|++ ++||||||||+..++.+++.+.+.
T Consensus 14 ~~~~~~v~~i~~~~~~~el---------~~~qq~av~~~~~--~~~N~l----i~aPTgsGKTlIA~lai~~~l~~~--- 75 (766)
T COG1204 14 VKLDDRVLEILKGDGIDEL---------FNPQQEAVEKGLL--SDENVL----ISAPTGSGKTLIALLAILSTLLEG--- 75 (766)
T ss_pred ccccHHHHHHhccCChHHh---------hHHHHHHhhcccc--CCCcEE----EEcCCCCchHHHHHHHHHHHHHhc---
Confidence 3478888888888888766 55565555 5555 789999 999999999999999999999863
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CCCCC
Q psy10677 219 EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DAHSP 293 (317)
Q Consensus 219 ~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~~~~ 293 (317)
+.+++++||+|.||.+.++.++++. .+|+++...+|+.+.......-..|+|+||.++-.++.+. .++++
T Consensus 76 ----~~k~vYivPlkALa~Ek~~~~~~~~-~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lv 150 (766)
T COG1204 76 ----GGKVVYIVPLKALAEEKYEEFSRLE-ELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLV 150 (766)
T ss_pred ----CCcEEEEeChHHHHHHHHHHhhhHH-hcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEE
Confidence 5799999999999999999999544 4699999999999977755454559999999998777764 67899
Q ss_pred CCchhHHHhh
Q psy10677 294 CLSVWRRLQD 303 (317)
Q Consensus 294 ~lde~d~l~~ 303 (317)
++||++.+-|
T Consensus 151 ViDEiH~l~d 160 (766)
T COG1204 151 VIDEIHLLGD 160 (766)
T ss_pred EEeeeeecCC
Confidence 9999987766
No 79
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=5.9e-15 Score=149.12 Aligned_cols=120 Identities=16% Similarity=0.104 Sum_probs=102.4
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+.=.+. +|+ + +.++||+|||+++.+|++-.... |..+-|++||++||.|.++.+..+.
T Consensus 83 ~dvQlig~l~L~--~G~--I----aem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 83 FDVQLIGGMVLH--EGK--I----AEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred CccHHHhhHHhc--CCc--h----hhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 899988876666 775 7 88999999999999999643332 2346699999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHH-HHHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSL-GIYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l-~~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
+.+|+++++++||.+..++...... |++|||++| .|+|..+ .+++.++||+|+||=
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLI 215 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILI 215 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhee
Confidence 9999999999999999888877644 999999999 8888765 466889999999863
No 80
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.57 E-value=1.1e-14 Score=143.15 Aligned_cols=164 Identities=10% Similarity=0.027 Sum_probs=114.7
Q ss_pred HHHHHHHHHHCCceeecCCCCCCcccccC---CCCChhhhcccCcCC--CCCCCcCCCCCCCCchhhhhccccccccCcC
Q psy10677 111 KEEIDSFRKEHNITLIGQNIPKPVKTLDE---TNIPSYILGPMKPKT--TNNENNHNKNKKCGDKESKNWTIPLNFQAKK 185 (317)
Q Consensus 111 ~~~i~~~~~~~~i~~~g~~~~~~~~~f~~---~~l~~~l~~~l~~~g--~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~d 185 (317)
.+.+..+.+.+++...= .....+.+. ..+.+.+...+...| ...| ++.|.+|++.++ .+++
T Consensus 66 ~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~---------r~~Q~~av~~~l--~~~~ 131 (501)
T PHA02558 66 VGQLKKFAKNRGYSIWV---DPRIEENEDISREDFDEWVSSLEIYSGNKKIEP---------HWYQYDAVYEGL--KNNR 131 (501)
T ss_pred HHHHHHHHHhcCCeEec---CcccccCCCCCHHHHHhHhhhcccccCCCcCCC---------CHHHHHHHHHHH--hcCc
Confidence 67788888888876522 112222222 122233333333222 3467 999999999999 8999
Q ss_pred cccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHH
Q psy10677 186 FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMY 265 (317)
Q Consensus 186 vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~ 265 (317)
.+ ++||||||||+++..-+ ..+... ...++|||+||+||+.|+.+.++++.......+..++||....
T Consensus 132 ~i----l~apTGsGKT~i~~~l~-~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~- 199 (501)
T PHA02558 132 RL----LNLPTSAGKSLIQYLLS-RYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD- 199 (501)
T ss_pred eE----EEeCCCCCHHHHHHHHH-HHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-
Confidence 99 99999999999765422 222221 2358999999999999999999998865455666777776543
Q ss_pred HHHHccCcEEECcHHHHHHHhc--CCCCCCCCchhHHHhh
Q psy10677 266 QVILLRILTSATNTSLGIYLQQ--NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 266 ~~~~~~~ilv~TP~~l~~~l~~--~~~~~~~lde~d~l~~ 303 (317)
.-..|+|+||+++.+.... +.+.+.++||+|.+..
T Consensus 200 ---~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~ 236 (501)
T PHA02558 200 ---TDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTG 236 (501)
T ss_pred ---CCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccc
Confidence 1134999999999876532 4788999999999876
No 81
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.54 E-value=7.6e-15 Score=147.30 Aligned_cols=128 Identities=10% Similarity=-0.036 Sum_probs=96.8
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHH---------HHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFT---------YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQ 238 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla---------~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Q 238 (317)
..+|.+++|.++ +|+|++ ++|+||||||.+ |++|.+..+.+.. ....+.+++|++||||||.|
T Consensus 166 ~~iQ~qil~~i~--~gkdvI----v~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~q 237 (675)
T PHA02653 166 PDVQLKIFEAWI--SRKPVV----LTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRL 237 (675)
T ss_pred HHHHHHHHHHHH--hCCCEE----EECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHH
Confidence 347899999999 999999 999999999997 6677777664321 02245799999999999999
Q ss_pred HHHHHHHHhcC---CCcEEEEEECCCCHHHHHHHc--cCcEEECcHHHHHHHhcCCCCCCCCchhHHHhhhcC
Q psy10677 239 IQAVISIFSRT---MRIRHACLYGGTSKMYQVILL--RILTSATNTSLGIYLQQNDAHSPCLSVWRRLQDILG 306 (317)
Q Consensus 239 i~~~~~~l~~~---~~~~~~~~~gg~~~~~~~~~~--~~ilv~TP~~l~~~l~~~~~~~~~lde~d~l~~~~g 306 (317)
+...+.+..+. .++.+.+.+||.+........ ..++|+|++... ..-..+.+.++||||++.+ ++
T Consensus 238 i~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l--~~L~~v~~VVIDEaHEr~~-~~ 307 (675)
T PHA02653 238 HSITLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTL--NKLFDYGTVIIDEVHEHDQ-IG 307 (675)
T ss_pred HHHHHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccc--cccccCCEEEccccccCcc-ch
Confidence 99999887654 367888999999842222222 238999987422 2335788999999999876 44
No 82
>KOG0342|consensus
Probab=99.54 E-value=5.2e-15 Score=138.64 Aligned_cols=118 Identities=20% Similarity=0.268 Sum_probs=105.3
Q ss_pred CcccCCChHHHHHHHHhcC-CCEEEEEcCCCC-CCCcCcEEEEEEccCCCchhhhhhhcc--------------------
Q psy10677 1 MWSATWPREIQKLAKEFLS-DPIQLNVGSANL-AANPNIKQFVEICHEYEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~-~p~~i~v~~~~~-~~~~~i~q~~~~~~~~~K~~~L~~ll~-------------------- 58 (317)
|||||+|.+|+++++-.|+ ||+.|++...+. .+++.++|-|+.++.+.++.+|..+|+
T Consensus 266 LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~ 345 (543)
T KOG0342|consen 266 LFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKF 345 (543)
T ss_pred EeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHH
Confidence 7999999999999999997 799998765443 678999999999999888888888886
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
|||+++| +|++.+..|||| |||+|+ .++..++.|+.|++. ++
T Consensus 346 ~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~------P~V~~VvQ~~~P~d~------~~ 413 (543)
T KOG0342|consen 346 HAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDI------PDVDWVVQYDPPSDP------EQ 413 (543)
T ss_pred HHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCC------CCceEEEEeCCCCCH------HH
Confidence 9999999 999999999999 999999 899999999999876 89
Q ss_pred HHHHHHHHCCceeecCCC
Q psy10677 113 EIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~ 130 (317)
|||+++++.+.+..|...
T Consensus 414 YIHRvGRTaR~gk~G~al 431 (543)
T KOG0342|consen 414 YIHRVGRTAREGKEGKAL 431 (543)
T ss_pred HHHHhccccccCCCceEE
Confidence 999999999966677653
No 83
>KOG0952|consensus
Probab=99.53 E-value=1.2e-14 Score=146.28 Aligned_cols=134 Identities=15% Similarity=0.051 Sum_probs=109.3
Q ss_pred CCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCC--CCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 164 NKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPK--LEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 164 ~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~--~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
++.|+.+|+.++|.++. +..|++ +|||||||||..|+|.||+.+.+... ....++.+.++++|+++||..+.+
T Consensus 108 f~~fN~iQS~vFp~aY~-SneNML----IcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 108 FEEFNRIQSEVFPVAYK-SNENML----ICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred HHHHHHHHHHhhhhhhc-CCCCEE----EECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 34559999999999996 788999 99999999999999999999986321 112357899999999999999999
Q ss_pred HHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc---------CCCCCCCCchhHHHhh
Q psy10677 242 VISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ---------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 242 ~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~---------~~~~~~~lde~d~l~~ 303 (317)
.+.+-...+|+++..++|++........--.|||+||.+. |.+.+ +.+.++.+||.+-|-|
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd 252 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHD 252 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHHHHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcC
Confidence 9888888889999999999988766644444999999864 44443 3677889999876655
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.51 E-value=3.5e-14 Score=143.90 Aligned_cols=117 Identities=16% Similarity=0.058 Sum_probs=96.8
Q ss_pred CCCCchhhhhcccccccc---CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 165 KKCGDKESKNWTIPLNFQ---AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 165 ~~~t~iQ~~~ip~~l~~~---g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
..+|+.|.+++..+. + +++++ +.|+||||||.+|+.++...+.. +.++|||+||++|+.|+++
T Consensus 143 ~~Lt~~Q~~ai~~i~--~~~~~~~~L----l~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~ 208 (679)
T PRK05580 143 PTLNPEQAAAVEAIR--AAAGFSPFL----LDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLA 208 (679)
T ss_pred CCCCHHHHHHHHHHH--hccCCCcEE----EECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHH
Confidence 357999999999999 6 37888 99999999999999988776653 5689999999999999999
Q ss_pred HHHHHhcCCCcEEEEEECCCCHHHHHHHcc-------CcEEECcHHHHHHHhcCCCCCCCCchhHH
Q psy10677 242 VISIFSRTMRIRHACLYGGTSKMYQVILLR-------ILTSATNTSLGIYLQQNDAHSPCLSVWRR 300 (317)
Q Consensus 242 ~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~-------~ilv~TP~~l~~~l~~~~~~~~~lde~d~ 300 (317)
.+++.. +.+++.++||.+..++...+. +|+||||+.+. +.-.++.+.++||++.
T Consensus 209 ~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 209 RFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--LPFKNLGLIIVDEEHD 269 (679)
T ss_pred HHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--ccccCCCEEEEECCCc
Confidence 888743 578999999998776654332 38999999885 3446789999999875
No 85
>KOG0338|consensus
Probab=99.50 E-value=6.9e-15 Score=138.29 Aligned_cols=117 Identities=18% Similarity=0.235 Sum_probs=102.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC---CCchhhhhhhcc-------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE---YEKPAKWWDSNN------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~---~~K~~~L~~ll~------------------- 58 (317)
||||||.++|.+|+..-|++|+.|.|.+.. .+...+.|.|+.+.. .++-..|..|+.
T Consensus 363 LFSATMteeVkdL~slSL~kPvrifvd~~~-~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHR 441 (691)
T KOG0338|consen 363 LFSATMTEEVKDLASLSLNKPVRIFVDPNK-DTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHR 441 (691)
T ss_pred eehhhhHHHHHHHHHhhcCCCeEEEeCCcc-ccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHH
Confidence 799999999999999999999999998877 677889999887652 235454444443
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
|||.++| .|+.+++.+||| |||+|| ..+..|+||.+|... +.
T Consensus 442 l~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI------~gV~tVINy~mP~t~------e~ 509 (691)
T KOG0338|consen 442 LRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDI------EGVQTVINYAMPKTI------EH 509 (691)
T ss_pred HHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCc------cceeEEEeccCchhH------HH
Confidence 9999999 999999999999 999999 899999999999866 89
Q ss_pred HHHHHHHHCCceeecCCC
Q psy10677 113 EIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~ 130 (317)
|+|+.+++.+++..|..+
T Consensus 510 Y~HRVGRTARAGRaGrsV 527 (691)
T KOG0338|consen 510 YLHRVGRTARAGRAGRSV 527 (691)
T ss_pred HHHHhhhhhhcccCcceE
Confidence 999999999999988876
No 86
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.50 E-value=2.9e-13 Score=115.00 Aligned_cols=124 Identities=27% Similarity=0.285 Sum_probs=101.7
Q ss_pred CchhhhhccccccccC-cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQA-KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
++.|.++++.++ .+ +.++ +.++||||||.+++.+++..+.... ...++|++||+.++.|..+.+.++
T Consensus 10 ~~~Q~~~~~~~~--~~~~~~~----i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 10 RPYQKEAIEALL--SGLRDVI----LAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred CHHHHHHHHHHH--cCCCcEE----EECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 999999999999 88 8999 9999999999999999999886532 458999999999999999999998
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHHHHhcCC-----CCCCCCchhHHHhh
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILLR----ILTSATNTSLGIYLQQND-----AHSPCLSVWRRLQD 303 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~~l~~~~-----~~~~~lde~d~l~~ 303 (317)
............++.........+. .++++|++.+.+.+.... +.+.++||++.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 143 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLD 143 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc
Confidence 8765545555666665433333222 489999999999888854 66889999999886
No 87
>KOG0345|consensus
Probab=99.49 E-value=1.9e-14 Score=134.29 Aligned_cols=118 Identities=20% Similarity=0.244 Sum_probs=106.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCC-CCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANL-AANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~-~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
|||||+.++|.+|++..|+||+.|+|+.... .++..+..+|..|+..+|...|.++|.
T Consensus 193 LFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~ 272 (567)
T KOG0345|consen 193 LFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFG 272 (567)
T ss_pred cccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHH
Confidence 7999999999999999999999999987662 267889999999999999999999996
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
+||.|+| .|+..+-.+|+| |||+|| .+++.|+.|++|.+. ..
T Consensus 273 ~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi------p~iD~VvQ~DpP~~~------~~ 340 (567)
T KOG0345|consen 273 KLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI------PGIDLVVQFDPPKDP------SS 340 (567)
T ss_pred HHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCC------CCceEEEecCCCCCh------hH
Confidence 9999999 899988899988 999999 889999999999865 67
Q ss_pred HHHHHHHHCCceeecCCC
Q psy10677 113 EIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~ 130 (317)
=+|+-+++.+.+..|.++
T Consensus 341 FvHR~GRTaR~gr~G~Ai 358 (567)
T KOG0345|consen 341 FVHRCGRTARAGREGNAI 358 (567)
T ss_pred HHhhcchhhhccCccceE
Confidence 789999999988888765
No 88
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=1e-13 Score=140.34 Aligned_cols=120 Identities=16% Similarity=0.073 Sum_probs=102.3
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|...-=.+. +|+ + +.++||+|||++|.+|++...+. |..+.|++||++||.|..+++..+.
T Consensus 84 ydVQliGgl~L~--~G~--I----aEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 84 FDVQLLGGMVLD--SNR--I----AEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CchHHhcchHhc--CCc--c----ccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 888887665555 665 6 78999999999999999987764 3459999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHcc-CcEEECcHHH-HHHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLR-ILTSATNTSL-GIYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~-~ilv~TP~~l-~~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
+.+|+++.+++||.+..+...... .|++|||+++ .|+|..+ .+++.++||+|.||.
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 999999999999999877666543 4999999999 8888775 455788999999876
No 89
>KOG0339|consensus
Probab=99.47 E-value=3.2e-14 Score=133.73 Aligned_cols=143 Identities=22% Similarity=0.275 Sum_probs=119.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCC-Cchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEY-EKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~-~K~~~L~~ll~--------------------- 58 (317)
||||||+..|+++++.+|.||+.|..+.-+ .+++.|.|.+.+|++. +|.+-|.+-|-
T Consensus 406 lFsaTf~~kIe~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i 484 (731)
T KOG0339|consen 406 LFSATFKKKIEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEI 484 (731)
T ss_pred EeeccchHHHHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHH
Confidence 799999999999999999999998887666 6889999999999864 46665553331
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
+||+|.| +|+++..+|||| |||+|| .+...|+||++..+- +-.
T Consensus 485 ~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI------~~ikTVvnyD~ardI------dth 552 (731)
T KOG0339|consen 485 AANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDI------PSIKTVVNYDFARDI------DTH 552 (731)
T ss_pred HHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCc------cccceeecccccchh------HHH
Confidence 9999998 999999999999 999999 788999999976544 567
Q ss_pred HHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 114 IDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 114 i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
.|++.++.+..-+|.. .++.+-.|..+.-+|+++|...|-..|
T Consensus 553 thrigrtgRag~kGva--yTlvTeKDa~fAG~LVnnLe~agQnVP 595 (731)
T KOG0339|consen 553 THRIGRTGRAGEKGVA--YTLVTEKDAEFAGHLVNNLEGAGQNVP 595 (731)
T ss_pred HHHhhhccccccccee--eEEechhhHHHhhHHHHHHhhccccCC
Confidence 8888888888777754 366677777788889999988888777
No 90
>KOG0334|consensus
Probab=99.47 E-value=2.4e-14 Score=144.63 Aligned_cols=151 Identities=19% Similarity=0.281 Sum_probs=135.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEcc-CCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICH-EYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~-~~~K~~~L~~ll~--------------------- 58 (317)
|||||+|..++.+|++.|+.|+.|.|+... ...+.|+|.+.+|. +.+|+..|..||.
T Consensus 551 lfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l 629 (997)
T KOG0334|consen 551 LFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADAL 629 (997)
T ss_pred hhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHH
Confidence 699999999999999999999999999777 78999999999999 8889999999986
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
|||+.+| .||+|.+.+||| |||+|+ .+...|+||+.|+.. +.+
T Consensus 630 ~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv------~~l~Lvvnyd~pnh~------edy 697 (997)
T KOG0334|consen 630 LRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDV------KELILVVNYDFPNHY------EDY 697 (997)
T ss_pred HHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccccc------ccceEEEEcccchhH------HHH
Confidence 9999999 999999999999 999999 899999999999865 679
Q ss_pred HHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhc
Q psy10677 114 IDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNW 175 (317)
Q Consensus 114 i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~i 175 (317)
+|+..++.+..-.|..+ ++.+++++.....|.++|...+-..| -+.|..+-
T Consensus 698 vhR~gRTgragrkg~Av--tFi~p~q~~~a~dl~~al~~~~~~~P---------~~l~~l~~ 748 (997)
T KOG0334|consen 698 VHRVGRTGRAGRKGAAV--TFITPDQLKYAGDLCKALELSKQPVP---------KLLQALSE 748 (997)
T ss_pred HHHhcccccCCccceeE--EEeChHHhhhHHHHHHHHHhccCCCc---------hHHHHHHH
Confidence 99999999999899655 77788899999999999977788888 77765443
No 91
>KOG0346|consensus
Probab=99.44 E-value=1.1e-13 Score=128.27 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=106.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|.|||++++|+.|.+.+|++|+.+.+...++..+.++.||++.|++.+|+.+|..+++
T Consensus 206 LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLk 285 (569)
T KOG0346|consen 206 LMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLK 285 (569)
T ss_pred eehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHH
Confidence 5799999999999999999999999998886667899999999999999999998886
Q ss_pred ------------CCCCccc--------eeecCcccceec---------------------------------------cc
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS---------------------------------------AV 79 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva---------------------------------------ar 79 (317)
|+|++++ +|..|-+.++|| +|
T Consensus 286 LfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsR 365 (569)
T KOG0346|consen 286 LFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSR 365 (569)
T ss_pred HHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhc
Confidence 8999998 999999999998 68
Q ss_pred ccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCC
Q psy10677 80 SFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 80 g~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
|+|+ ..+.+|.||++|... .+|||+.+++.+..-.|...
T Consensus 366 GIDF------~~V~~VlNFD~P~t~------~sYIHRvGRTaRg~n~Gtal 404 (569)
T KOG0346|consen 366 GIDF------HHVSNVLNFDFPETV------TSYIHRVGRTARGNNKGTAL 404 (569)
T ss_pred cccc------hheeeeeecCCCCch------HHHHHhccccccCCCCCceE
Confidence 8888 899999999999876 89999999888887777653
No 92
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.44 E-value=1.3e-13 Score=141.71 Aligned_cols=112 Identities=16% Similarity=0.037 Sum_probs=87.9
Q ss_pred ccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH-HhcCCCcE
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI-FSRTMRIR 253 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~-l~~~~~~~ 253 (317)
+..+. ++++++ ++|+||||||++|.+|+++... .+.+++|+.|||++|.|+++.+.. +....|..
T Consensus 14 ~~~l~--~~~~vv----v~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~ 79 (812)
T PRK11664 14 LTALK--TAPQVL----LKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGET 79 (812)
T ss_pred HHHHH--hCCCEE----EEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCce
Confidence 34445 788999 9999999999999999997532 134899999999999999999854 45556778
Q ss_pred EEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhHH-Hhh
Q psy10677 254 HACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWRR-LQD 303 (317)
Q Consensus 254 ~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~-l~~ 303 (317)
+...+++.+.... -..|+|+|||+|+++++. ..+.+.++||+|+ .++
T Consensus 80 VGy~vr~~~~~~~---~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~ 131 (812)
T PRK11664 80 VGYRMRAESKVGP---NTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQ 131 (812)
T ss_pred EEEEecCccccCC---CCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccc
Confidence 8887777653221 124999999999999886 4678899999996 444
No 93
>PTZ00110 helicase; Provisional
Probab=99.43 E-value=5.4e-14 Score=139.45 Aligned_cols=144 Identities=26% Similarity=0.375 Sum_probs=119.6
Q ss_pred CcccCCChHHHHHHHHhcC-CCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLS-DPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~-~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
+||||||++++.+++.++. +|+.+.++...+....+++|.++.+++.+|...|..++.
T Consensus 313 ~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~ 392 (545)
T PTZ00110 313 MWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADF 392 (545)
T ss_pred EEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHH
Confidence 5899999999999999996 699999887665567889999999988888887776663
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
+||+|+| +|++|+.+|||| +||+|+ .++..|++|++|... ++
T Consensus 393 l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi------~~v~~VI~~d~P~s~------~~ 460 (545)
T PTZ00110 393 LTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDV------KDVKYVINFDFPNQI------ED 460 (545)
T ss_pred HHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCc------ccCCEEEEeCCCCCH------HH
Confidence 8999998 899999999999 999999 899999999999765 78
Q ss_pred HHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 113 EIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
++++.++..+....|..+ .+.+-++..+...+++.|++.+-..|
T Consensus 461 yvqRiGRtGR~G~~G~ai--~~~~~~~~~~~~~l~~~l~~~~q~vp 504 (545)
T PTZ00110 461 YVHRIGRTGRAGAKGASY--TFLTPDKYRLARDLVKVLREAKQPVP 504 (545)
T ss_pred HHHHhcccccCCCCceEE--EEECcchHHHHHHHHHHHHHccCCCC
Confidence 999999888877666543 33344555677788888888877777
No 94
>PRK13766 Hef nuclease; Provisional
Probab=99.42 E-value=9.3e-13 Score=136.16 Aligned_cols=122 Identities=16% Similarity=0.065 Sum_probs=101.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.+.|.+++..++ .+ |++ +++|||+|||+++++++...+.. .+.++|||+||++|+.|..+.++++.
T Consensus 17 r~yQ~~~~~~~l--~~-n~l----v~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 82 (773)
T PRK13766 17 RLYQQLLAATAL--KK-NTL----VVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFL 82 (773)
T ss_pred cHHHHHHHHHHh--cC-CeE----EEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 899999998888 66 899 99999999999999999988742 35699999999999999999999987
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHHHhcC-----CCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~ 303 (317)
...+.++..++|+.+..+....+.. |+|+||+.+...+..+ .+++.++|||+++..
T Consensus 83 ~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~ 145 (773)
T PRK13766 83 NIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVG 145 (773)
T ss_pred CCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccc
Confidence 6556688888998887765544433 8999999998766554 466889999998754
No 95
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.42 E-value=7.1e-14 Score=137.97 Aligned_cols=143 Identities=22% Similarity=0.298 Sum_probs=118.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||+|.+++.++..++.+|..|.++... .....++|.+++++..+|...|..++.
T Consensus 305 ~~SATl~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l 383 (518)
T PLN00206 305 LFSATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLL 383 (518)
T ss_pred EEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHH
Confidence 589999999999999999999999998776 677889999998887777666555542
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
+||+|+| +|++|+.+|||| +||+|+ .++..|++|++|... ++
T Consensus 384 ~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDi------p~v~~VI~~d~P~s~------~~ 451 (518)
T PLN00206 384 ANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDL------LRVRQVIIFDMPNTI------KE 451 (518)
T ss_pred HHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCc------ccCCEEEEeCCCCCH------HH
Confidence 8999998 999999999999 999999 899999999998754 78
Q ss_pred HHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 113 EIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
++++.+|.++.+..|..+ .+.+-++..+-..+++.|+..|-..|
T Consensus 452 yihRiGRaGR~g~~G~ai--~f~~~~~~~~~~~l~~~l~~~~~~vp 495 (518)
T PLN00206 452 YIHQIGRASRMGEKGTAI--VFVNEEDRNLFPELVALLKSSGAAIP 495 (518)
T ss_pred HHHhccccccCCCCeEEE--EEEchhHHHHHHHHHHHHHHcCCCCC
Confidence 999999988887666554 33344555566778888888776666
No 96
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.42 E-value=5e-13 Score=126.03 Aligned_cols=116 Identities=10% Similarity=0.089 Sum_probs=85.8
Q ss_pred hhhhhccccccccCcC--cccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 170 KESKNWTIPLNFQAKK--FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 170 iQ~~~ip~~l~~~g~d--vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+|.++++.+. .+.+ ++ ++||||||||.||++|++.. +.++++++||++|+.|+++.++.+.
T Consensus 1 hQ~~~~~~~~--~~~~~~~~----i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~ 63 (357)
T TIGR03158 1 HQVATFEALQ--SKDADIIF----NTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFV 63 (357)
T ss_pred CHHHHHHHHH--cCCCCEEE----EECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHH
Confidence 5999999999 7764 78 89999999999999999841 2468999999999999999999987
Q ss_pred cCC----CcEEEEEECCCCHHHHH-------------------HH----ccCcEEECcHHHHHHHhc-------------
Q psy10677 248 RTM----RIRHACLYGGTSKMYQV-------------------IL----LRILTSATNTSLGIYLQQ------------- 287 (317)
Q Consensus 248 ~~~----~~~~~~~~gg~~~~~~~-------------------~~----~~~ilv~TP~~l~~~l~~------------- 287 (317)
..+ ++.+..+.|.+..+... .. -..|+++||..+..++..
T Consensus 64 ~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~ 143 (357)
T TIGR03158 64 DVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFY 143 (357)
T ss_pred HhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhh
Confidence 533 56667776653322000 01 122688888877655432
Q ss_pred CCCCCCCCchhHHHh
Q psy10677 288 NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 288 ~~~~~~~lde~d~l~ 302 (317)
..+++.++||++.+-
T Consensus 144 ~~~~~iV~DE~H~~~ 158 (357)
T TIGR03158 144 TKFSTVIFDEFHLYD 158 (357)
T ss_pred cCCCEEEEecccccC
Confidence 467888999987743
No 97
>KOG0343|consensus
Probab=99.41 E-value=1.3e-13 Score=130.81 Aligned_cols=168 Identities=20% Similarity=0.171 Sum_probs=124.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcC-CCCCCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGS-ANLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~-~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
|||||-.+.|.++|+..++||.+|.|.. +..+++.+++|+|+.|+-.+|++.|+.+++
T Consensus 251 LFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~ 330 (758)
T KOG0343|consen 251 LFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLY 330 (758)
T ss_pred eeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHH
Confidence 7999999999999999999999999873 324778999999999999999999999996
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
|||.|+| +|-+.+.-||+| |||+|+ .-+.-|+.++.|.+. +.
T Consensus 331 e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF------paVdwViQ~DCPedv------~t 398 (758)
T KOG0343|consen 331 EAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF------PAVDWVIQVDCPEDV------DT 398 (758)
T ss_pred HHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC------cccceEEEecCchhH------HH
Confidence 9999999 899989999999 999999 555568889988866 78
Q ss_pred HHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcc
Q psy10677 113 EIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFI 187 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi 187 (317)
|||+.+++.+..-+|...- +.+-++ .+.++..|++.++..-+-....++++.++.+.-..+. +..++-
T Consensus 399 YIHRvGRtAR~~~~G~sll--~L~psE---eE~~l~~Lq~k~I~i~~i~i~~~k~~~i~~~l~~ll~--~~~eLk 466 (758)
T KOG0343|consen 399 YIHRVGRTARYKERGESLL--MLTPSE---EEAMLKKLQKKKIPIKEIKIDPEKLTSIRNKLEALLA--KDPELK 466 (758)
T ss_pred HHHHhhhhhcccCCCceEE--EEcchh---HHHHHHHHHHcCCCHHhhccCHHHhhhHHHHHHHHHh--hCHHHH
Confidence 9999999998888886531 111111 1235555665554322222223455666554433333 444443
No 98
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.39 E-value=6.2e-13 Score=125.35 Aligned_cols=106 Identities=12% Similarity=0.021 Sum_probs=77.8
Q ss_pred CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHH
Q psy10677 185 KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKM 264 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 264 (317)
|++ ++||||||||++|++|++..+.+. .+.+++|++||++|+.|+++.++.+... .+..++|+....
T Consensus 1 ~vv----i~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~ 67 (358)
T TIGR01587 1 LLV----IEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFK 67 (358)
T ss_pred CEE----EEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHH
Confidence 467 999999999999999999886542 3579999999999999999999997542 233334432210
Q ss_pred -----------HHH----------HHccCcEEECcHHHHHHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 265 -----------YQV----------ILLRILTSATNTSLGIYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 265 -----------~~~----------~~~~~ilv~TP~~l~~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
... .....|+|+||+++...+..+ ...+.++||+|.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~ 138 (358)
T TIGR01587 68 RIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDE 138 (358)
T ss_pred HHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCH
Confidence 000 012238999999998876652 236789999999887
No 99
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.39 E-value=8.6e-13 Score=135.45 Aligned_cols=112 Identities=14% Similarity=0.068 Sum_probs=87.4
Q ss_pred ccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH-HHhcCCCcE
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS-IFSRTMRIR 253 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~-~l~~~~~~~ 253 (317)
+..+. ++.+++ ++|+||||||.+|.+|+++... .+.+++|+.|||++|.|+++.+. .+....|..
T Consensus 11 ~~~l~--~~~~vI----i~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~ 76 (819)
T TIGR01970 11 RDALA--AHPQVV----LEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT 76 (819)
T ss_pred HHHHH--cCCcEE----EECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE
Confidence 34445 788999 9999999999999999998752 24689999999999999999885 444455667
Q ss_pred EEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhH-HHhh
Q psy10677 254 HACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWR-RLQD 303 (317)
Q Consensus 254 ~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d-~l~~ 303 (317)
+...+++.+.. ..-.+|+|+|||+|+++++. ..+++.++||+| ++++
T Consensus 77 VGy~vr~~~~~---s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~ 128 (819)
T TIGR01970 77 VGYRVRGENKV---SRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLD 128 (819)
T ss_pred EEEEEcccccc---CCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhc
Confidence 76666654321 11234999999999999886 367899999999 5776
No 100
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.34 E-value=9.2e-13 Score=132.34 Aligned_cols=117 Identities=17% Similarity=0.264 Sum_probs=102.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
|||||+|+.+..+++.|+++|..|.+.... ....++.|.|+.+...+|.+.|.+++.
T Consensus 185 lfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~ 263 (629)
T PRK11634 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAE 263 (629)
T ss_pred EEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHH
Confidence 699999999999999999999999887666 567789999998888888888877764
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||+|+| +|++|+.+|||| +||+|+ .++..|++|+.|... +.+++
T Consensus 264 ~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDi------p~V~~VI~~d~P~~~------e~yvq 331 (629)
T PRK11634 264 ALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDV------ERISLVVNYDIPMDS------ESYVH 331 (629)
T ss_pred HHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCc------ccCCEEEEeCCCCCH------HHHHH
Confidence 8999998 899999999999 999999 899999999999755 78999
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+..+..+..-.|..+
T Consensus 332 RiGRtGRaGr~G~ai 346 (629)
T PRK11634 332 RIGRTGRAGRAGRAL 346 (629)
T ss_pred HhccccCCCCcceEE
Confidence 999988877666543
No 101
>KOG0340|consensus
Probab=99.33 E-value=4.8e-13 Score=121.12 Aligned_cols=117 Identities=19% Similarity=0.117 Sum_probs=102.6
Q ss_pred CcccCCChHHHHHHHHhcCC--CEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc--------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSD--PIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~--p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~-------------------- 58 (317)
|||||+.+.++++..--.+. +...++.+.. ++.+.+.|.|+.|+.+.|-..|.++|+
T Consensus 189 lfSATitd~i~ql~~~~i~k~~a~~~e~~~~v-stvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~c 267 (442)
T KOG0340|consen 189 LFSATITDTIKQLFGCPITKSIAFELEVIDGV-STVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTREC 267 (442)
T ss_pred EEEeehhhHHHHhhcCCcccccceEEeccCCC-CchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHH
Confidence 69999999999887665554 4445554444 788999999999999999999998886
Q ss_pred ----------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCC
Q psy10677 59 ----------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKT 110 (317)
Q Consensus 59 ----------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~ 110 (317)
+||.|+| +||++.+++||| +||+|| ..++.|+||++|.+.
T Consensus 268 Q~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI------P~V~LVvN~diPr~P------ 335 (442)
T KOG0340|consen 268 QLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI------PTVELVVNHDIPRDP------ 335 (442)
T ss_pred HHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC------CceeEEEecCCCCCH------
Confidence 9999999 999999999999 999999 899999999999876
Q ss_pred HHHHHHHHHHCCceeecCCC
Q psy10677 111 KEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 111 ~~~i~~~~~~~~i~~~g~~~ 130 (317)
..+||+.+++.+++..|..+
T Consensus 336 ~~yiHRvGRtARAGR~G~ai 355 (442)
T KOG0340|consen 336 KDYIHRVGRTARAGRKGMAI 355 (442)
T ss_pred HHHHHhhcchhcccCCcceE
Confidence 79999999999999999876
No 102
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.31 E-value=1.3e-12 Score=127.40 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=100.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||+|+.++.++..++++|..+.+.... ....++|+++.++..+|.+.|.+++.
T Consensus 183 l~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~ 260 (460)
T PRK11776 183 LFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVAD 260 (460)
T ss_pred EEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHH
Confidence 589999999999999999999999887654 44569999999998889988888775
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||+|+| +|++|+.++||| +||+|+ .++..+++|++|... +.+++
T Consensus 261 ~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi------~~v~~VI~~d~p~~~------~~yiq 328 (460)
T PRK11776 261 ALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDI------KALEAVINYELARDP------EVHVH 328 (460)
T ss_pred HHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccch------hcCCeEEEecCCCCH------hHhhh
Confidence 8999998 999999999999 999999 899999999999754 68899
Q ss_pred HHHHHCCceeecCC
Q psy10677 116 SFRKEHNITLIGQN 129 (317)
Q Consensus 116 ~~~~~~~i~~~g~~ 129 (317)
+.++..+....|..
T Consensus 329 R~GRtGR~g~~G~a 342 (460)
T PRK11776 329 RIGRTGRAGSKGLA 342 (460)
T ss_pred hcccccCCCCcceE
Confidence 98888887666644
No 103
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.31 E-value=2.8e-12 Score=125.65 Aligned_cols=125 Identities=20% Similarity=0.161 Sum_probs=106.7
Q ss_pred CCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
++|.-|.+++..|.+ .+...+.|+|| |..|||||+..++.++.-+.. |.++..++||.-||.|.++.+
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQ--GDVGSGKTvVA~laml~ai~~--------G~Q~ALMAPTEILA~QH~~~~ 331 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQ--GDVGSGKTVVALLAMLAAIEA--------GYQAALMAPTEILAEQHYESL 331 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhc--cCcCCCHHHHHHHHHHHHHHc--------CCeeEEeccHHHHHHHHHHHH
Confidence 449999999999874 23445666666 999999999999999988763 789999999999999999999
Q ss_pred HHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECcHHHHHHHhcCCCCCCCCchhHH
Q psy10677 244 SIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATNTSLGIYLQQNDAHSPCLSVWRR 300 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP~~l~~~l~~~~~~~~~lde~d~ 300 (317)
.++...+|++++.++|..........+.. ++|||..-+.|-+...++.+.++||.+|
T Consensus 332 ~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHR 395 (677)
T COG1200 332 RKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHR 395 (677)
T ss_pred HHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEecccc
Confidence 99999999999999998876655544433 6999999999988999999999998765
No 104
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.27 E-value=7.3e-11 Score=94.37 Aligned_cols=105 Identities=30% Similarity=0.272 Sum_probs=86.2
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc-
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL- 270 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~- 270 (317)
+.++||||||..++..+....... ...+++|++|++.++.|..+.+...... ++.+..+.++.....+....
T Consensus 5 i~~~~G~GKT~~~~~~~~~~~~~~------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 77 (144)
T cd00046 5 LAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLS 77 (144)
T ss_pred EECCCCCchhHHHHHHHHHHHhcc------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhc
Confidence 899999999999999988876642 3579999999999999999999998876 77888887776665544222
Q ss_pred --cCcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhh
Q psy10677 271 --RILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQD 303 (317)
Q Consensus 271 --~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~ 303 (317)
..++++|++.+...+... ...+.++||++.+..
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~ 117 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN 117 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhh
Confidence 228999999999887764 688899999999887
No 105
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.26 E-value=2e-12 Score=124.72 Aligned_cols=117 Identities=19% Similarity=0.197 Sum_probs=101.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||+|..+++++..++++|..+.+.... ....+++|.++++...+|...|..+++
T Consensus 195 l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~ 273 (423)
T PRK04837 195 LFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWG 273 (423)
T ss_pred EEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 589999999999999999999999887766 566789998888877788888877763
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||+|+| +|++|+.++||| +||+|+ .++..|++|++|... +++++
T Consensus 274 ~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi------p~v~~VI~~d~P~s~------~~yiq 341 (423)
T PRK04837 274 HLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI------PAVTHVFNYDLPDDC------EDYVH 341 (423)
T ss_pred HHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc------cccCEEEEeCCCCch------hheEe
Confidence 9999998 899999999999 999999 899999999999754 68889
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+.++..+.+-.|..+
T Consensus 342 R~GR~gR~G~~G~ai 356 (423)
T PRK04837 342 RIGRTGRAGASGHSI 356 (423)
T ss_pred ccccccCCCCCeeEE
Confidence 988888887666554
No 106
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.25 E-value=2.2e-11 Score=115.27 Aligned_cols=120 Identities=15% Similarity=0.000 Sum_probs=101.6
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
...|......++ .+ |++ ++.|||-|||+..++-+..++... .+ ++|+|+||+-|+.|..+.|+++.
T Consensus 17 R~YQ~~i~a~al--~~-NtL----vvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~ 82 (542)
T COG1111 17 RLYQLNIAAKAL--FK-NTL----VVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVT 82 (542)
T ss_pred HHHHHHHHHHHh--hc-CeE----EEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHh
Confidence 666776666666 44 888 999999999999999999888764 34 89999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHHHhcCCCC-----CCCCchhHHH
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIYLQQNDAH-----SPCLSVWRRL 301 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~l~~~~~~-----~~~lde~d~l 301 (317)
....-.++.++|..+..+....+.+ |+|+||..+.+-|..|.++ +.+.|||+|-
T Consensus 83 ~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRA 143 (542)
T COG1111 83 GIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRA 143 (542)
T ss_pred CCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhc
Confidence 8777889999999999988887765 9999999999999988655 5567788763
No 107
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.25 E-value=2.5e-12 Score=125.23 Aligned_cols=117 Identities=22% Similarity=0.358 Sum_probs=100.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||++.+++.++..++.+|..+.+.... ....++.|++..++..+|.+.|..++.
T Consensus 185 ~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~ 263 (456)
T PRK10590 185 LFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAE 263 (456)
T ss_pred EEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHH
Confidence 589999999999999999999998887666 466789999888887777777776663
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||+|+| +|++|+.+|||| +||+|+ .++..|++|++|... +++++
T Consensus 264 ~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDi------p~v~~VI~~~~P~~~------~~yvq 331 (456)
T PRK10590 264 QLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDI------EELPHVVNYELPNVP------EDYVH 331 (456)
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCc------ccCCEEEEeCCCCCH------HHhhh
Confidence 9999998 899999999999 999999 899999999998754 68999
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+.++..+....|..+
T Consensus 332 R~GRaGR~g~~G~ai 346 (456)
T PRK10590 332 RIGRTGRAAATGEAL 346 (456)
T ss_pred hccccccCCCCeeEE
Confidence 999888877666544
No 108
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.21 E-value=5.5e-12 Score=125.78 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=100.9
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||++..+..++..+|.+|..+.+.... .....+.|.++.+...+|...|..++.
T Consensus 197 l~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~ 275 (572)
T PRK04537 197 LFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVAR 275 (572)
T ss_pred EEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHH
Confidence 599999999999999999999888776665 466789999988888888888877764
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||+|++ .|++|+.+|||| +||+|+ .++..+++|++|... +++++
T Consensus 276 ~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDi------p~V~~VInyd~P~s~------~~yvq 343 (572)
T PRK04537 276 TLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHI------DGVKYVYNYDLPFDA------EDYVH 343 (572)
T ss_pred HHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCc------cCCCEEEEcCCCCCH------HHHhh
Confidence 9999998 999999999999 999999 899999999998654 78999
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+..+..+....|..+
T Consensus 344 RiGRaGR~G~~G~ai 358 (572)
T PRK04537 344 RIGRTARLGEEGDAI 358 (572)
T ss_pred hhcccccCCCCceEE
Confidence 999888876666554
No 109
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.19 E-value=2e-11 Score=116.76 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=122.6
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccc-cccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTI-PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~-~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
..+++.+|+.+.+.|+..|++.. .|+|..|+.. ++ .|.|.+ +.++|+||||+.--++-+.++..
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eL---------lPVQ~laVe~GLL--eG~nll----VVSaTasGKTLIgElAGi~~~l~ 259 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEEL---------LPVQVLAVEAGLL--EGENLL----VVSATASGKTLIGELAGIPRLLS 259 (830)
T ss_pred cccccCCcHHHHHHHHhcCccee---------cchhhhhhhhccc--cCCceE----EEeccCCCcchHHHhhCcHHHHh
Confidence 56899999999999999999999 9999999977 67 999999 99999999999999999988875
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc-------CcEEECcHHHHHHHhc
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR-------ILTSATNTSLGIYLQQ 287 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~-------~ilv~TP~~l~~~l~~ 287 (317)
.|-+.|+|+|.-+||+|-|+.++.--..+++++..-+|-.-......-.. +|||||=.-+-.+|..
T Consensus 260 -------~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt 332 (830)
T COG1202 260 -------GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT 332 (830)
T ss_pred -------CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc
Confidence 36789999999999999999999877888999888777554433321111 1999999988888877
Q ss_pred C----CCCCCCCchhHHHhh
Q psy10677 288 N----DAHSPCLSVWRRLQD 303 (317)
Q Consensus 288 ~----~~~~~~lde~d~l~~ 303 (317)
+ ++...++||.+.|-|
T Consensus 333 g~~lgdiGtVVIDEiHtL~d 352 (830)
T COG1202 333 GKDLGDIGTVVIDEIHTLED 352 (830)
T ss_pred CCcccccceEEeeeeeeccc
Confidence 4 677888998877655
No 110
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.16 E-value=1e-10 Score=114.64 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=104.9
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.+-|.++|..++ +|+|++ +.-|||.||++||.+|.+-. .| -.||++|.-.|-..+.+.++..
T Consensus 19 R~gQ~evI~~~l--~g~d~l----vvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~~l~~~- 80 (590)
T COG0514 19 RPGQQEIIDALL--SGKDTL----VVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVDQLEAA- 80 (590)
T ss_pred CCCHHHHHHHHH--cCCcEE----EEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHHHHHHc-
Confidence 999999999999 999999 99999999999999999843 23 7999999888886655555443
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-------cEEECcHHH-----HHHHhcCCCCCCCCchhHHHhhhcC--CcHHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-------LTSATNTSL-----GIYLQQNDAHSPCLSVWRRLQDILG--LTEETCV 313 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP~~l-----~~~l~~~~~~~~~lde~d~l~~~~g--f~~~~~~ 313 (317)
|++++++.+..+.++....+.. ++.-+|.+| .+.++...+.+.++|||+.+-+ -| |.|+-++
T Consensus 81 ---Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSq-WGhdFRP~Y~~ 156 (590)
T COG0514 81 ---GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQ-WGHDFRPDYRR 156 (590)
T ss_pred ---CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhh-cCCccCHhHHH
Confidence 7899999999888777655544 688889887 4788889999999999999999 88 8888765
Q ss_pred h
Q psy10677 314 N 314 (317)
Q Consensus 314 ~ 314 (317)
.
T Consensus 157 l 157 (590)
T COG0514 157 L 157 (590)
T ss_pred H
Confidence 3
No 111
>KOG0951|consensus
Probab=99.13 E-value=1.2e-10 Score=119.44 Aligned_cols=140 Identities=13% Similarity=0.029 Sum_probs=108.0
Q ss_pred CCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCC---CCCceEEEEcC
Q psy10677 155 TNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE---GDGPIALVLAP 231 (317)
Q Consensus 155 ~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~---~~~~~alil~P 231 (317)
|.+| +.+.+..|++||....+..+. ...+++ +|||||+|||...++-+|+.+....+... ....+.++++|
T Consensus 299 Wnq~-aF~g~~sLNrIQS~v~daAl~-~~EnmL----lCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 299 WNQP-AFFGKQSLNRIQSKVYDAALR-GDENML----LCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred hhhh-hcccchhhhHHHHHHHHHHhc-CcCcEE----EeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 4444 334445679999999999883 556899 99999999999999999999976543211 23468999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC--------CCCCCCCchhHHH
Q psy10677 232 TRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN--------DAHSPCLSVWRRL 301 (317)
Q Consensus 232 treLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~--------~~~~~~lde~d~l 301 (317)
++.||+.+...+.+....+||++.-.+|+.....+...-..++||||..- |.+.++ .++++.+||.+-+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999886655544455999999874 556665 3445666666544
No 112
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.13 E-value=5e-11 Score=115.38 Aligned_cols=116 Identities=17% Similarity=0.228 Sum_probs=98.2
Q ss_pred CcccCCCh-HHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC-CCchhhhhhhcc--------------------
Q psy10677 1 MWSATWPR-EIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE-YEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT~~~-~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~-~~K~~~L~~ll~-------------------- 58 (317)
+||||++. .+..+++.++++|+.+.+.... ....++.|+++.++. .+|.+.|.++++
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l 261 (434)
T PRK11192 183 LFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHEL 261 (434)
T ss_pred EEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHH
Confidence 59999985 5999999999999999887766 567789999988874 568888887774
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
+||+|+| +|++|+.+|||| +||+|+ .++..|++|++|... +.+
T Consensus 262 ~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDi------p~v~~VI~~d~p~s~------~~y 329 (434)
T PRK11192 262 AGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDI------DDVSHVINFDMPRSA------DTY 329 (434)
T ss_pred HHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccC------CCCCEEEEECCCCCH------HHH
Confidence 9999998 999999999999 999999 899999999998754 688
Q ss_pred HHHHHHHCCceeecCC
Q psy10677 114 IDSFRKEHNITLIGQN 129 (317)
Q Consensus 114 i~~~~~~~~i~~~g~~ 129 (317)
+++.++..+.+..|..
T Consensus 330 iqr~GR~gR~g~~g~a 345 (434)
T PRK11192 330 LHRIGRTGRAGRKGTA 345 (434)
T ss_pred hhcccccccCCCCceE
Confidence 8888888876555543
No 113
>KOG0329|consensus
Probab=99.12 E-value=7.8e-12 Score=108.87 Aligned_cols=115 Identities=22% Similarity=0.269 Sum_probs=95.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc-CCCCccc--eeecC------c
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN-GHYPKSV--RFVLG------T 71 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~-lhg~~~q--~F~~g------~ 71 (317)
|||||++++++..+++||.||..|.+..+...+.+.++|+|+...+.+|...|.+||+ | +.+| .|-.. +
T Consensus 222 mfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~L--eFNQVvIFvKsv~Rl~f~ 299 (387)
T KOG0329|consen 222 MFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVL--EFNQVVIFVKSVQRLSFQ 299 (387)
T ss_pred eeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhh--hhcceeEeeehhhhhhhh
Confidence 6999999999999999999999999987765678899999999999999888888886 1 1223 22111 2
Q ss_pred ccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCC
Q psy10677 72 AGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 72 ~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
.+ +|| .||+|| .-+..+.||++|++. +.+.|+..+..+.+..|..+
T Consensus 300 kr-~vat~lfgrgmdi------ervNi~~NYdmp~~~------DtYlHrv~rAgrfGtkglai 349 (387)
T KOG0329|consen 300 KR-LVATDLFGRGMDI------ERVNIVFNYDMPEDS------DTYLHRVARAGRFGTKGLAI 349 (387)
T ss_pred hh-hHHhhhhccccCc------ccceeeeccCCCCCc------hHHHHHhhhhhcccccccee
Confidence 33 677 999999 888889999999876 78999999999998888776
No 114
>KOG4284|consensus
Probab=99.12 E-value=5e-11 Score=115.30 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=102.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCC--------Cchhhhhhhcc--------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEY--------EKPAKWWDSNN-------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~--------~K~~~L~~ll~-------------- 58 (317)
.||||+|+-+..+..+||+||..|+...+. ...-.|+|||+.+... .|.+.|.++++
T Consensus 204 a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d-~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~ 282 (980)
T KOG4284|consen 204 AFSATYPRNLDNLLSKFMRDPALVRFNADD-VQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQI 282 (980)
T ss_pred EEeccCchhHHHHHHHHhcccceeecccCC-ceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhh
Confidence 389999999999999999999999998887 5777899998876542 48888888886
Q ss_pred -------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccC
Q psy10677 59 -------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQ 107 (317)
Q Consensus 59 -------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~ 107 (317)
|.|.|+| ++|+-.++|||+ |||+|- ..+..|+|.+.|.+.
T Consensus 283 sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa------~~vNLVVNiD~p~d~--- 353 (980)
T KOG4284|consen 283 SRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDA------DNVNLVVNIDAPADE--- 353 (980)
T ss_pred hhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCc------cccceEEecCCCcch---
Confidence 8999999 788889999999 999998 888999999999877
Q ss_pred CCCHHHHHHHHHHCCceeecCCC
Q psy10677 108 GKTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 108 ~~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
+.+.|++++.++.+.+|-.+
T Consensus 354 ---eTY~HRIGRAgRFG~~G~aV 373 (980)
T KOG4284|consen 354 ---ETYFHRIGRAGRFGAHGAAV 373 (980)
T ss_pred ---HHHHHHhhhcccccccceeE
Confidence 88999999999887777543
No 115
>KOG0348|consensus
Probab=99.09 E-value=6.2e-11 Score=112.56 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=101.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCC------------------------CCCCCcCcEEEEEEccCCCchhhhhhh
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSA------------------------NLAANPNIKQFVEICHEYEKPAKWWDS 56 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~------------------------~~~~~~~i~q~~~~~~~~~K~~~L~~l 56 (317)
|.|||+.+.|.+|++.-|+||+.|.++.. ..+.++++.|.|.+|+..-+.-+|..+
T Consensus 336 LlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~ 415 (708)
T KOG0348|consen 336 LLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAAL 415 (708)
T ss_pred hhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHH
Confidence 57999999999999999999999983211 024567789999999998888888877
Q ss_pred cc-----------------------------------------------------------CCCCccc--------eeec
Q psy10677 57 NN-----------------------------------------------------------GHYPKSV--------RFVL 69 (317)
Q Consensus 57 l~-----------------------------------------------------------lhg~~~q--------~F~~ 69 (317)
|. |||.|+| .|+.
T Consensus 416 L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~ 495 (708)
T KOG0348|consen 416 LLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSH 495 (708)
T ss_pred HHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcc
Confidence 75 9999999 8888
Q ss_pred Ccccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCC
Q psy10677 70 GTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 70 g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
..--||+| |||+|+ .++..++.|+.|... .+++|+++++.+++-+|..+
T Consensus 496 ~~~~VLLcTDVAaRGLDl------P~V~~vVQYd~P~s~------adylHRvGRTARaG~kG~al 548 (708)
T KOG0348|consen 496 SRRAVLLCTDVAARGLDL------PHVGLVVQYDPPFST------ADYLHRVGRTARAGEKGEAL 548 (708)
T ss_pred ccceEEEehhhhhccCCC------CCcCeEEEeCCCCCH------HHHHHHhhhhhhccCCCceE
Confidence 77779988 999999 899999999999865 89999999999999999765
No 116
>KOG0354|consensus
Probab=99.06 E-value=3.4e-10 Score=112.63 Aligned_cols=119 Identities=19% Similarity=0.119 Sum_probs=93.1
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+...|.+.+..+| |+|++ +++|||+|||+....-+++|+...+ +.++|+++||+-|+.|+...++.+
T Consensus 63 lR~YQ~eivq~AL---gkNti----i~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~ 129 (746)
T KOG0354|consen 63 LRNYQEELVQPAL---GKNTI----IALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIY 129 (746)
T ss_pred ccHHHHHHhHHhh---cCCeE----EEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhc
Confidence 3888999887777 89999 9999999999999999999997653 479999999999999999777777
Q ss_pred hcCCCcEEEEEECC-CCHH--HHHHHccCcEEECcHHHHHHHhcC------CCCCCCCchhHH
Q psy10677 247 SRTMRIRHACLYGG-TSKM--YQVILLRILTSATNTSLGIYLQQN------DAHSPCLSVWRR 300 (317)
Q Consensus 247 ~~~~~~~~~~~~gg-~~~~--~~~~~~~~ilv~TP~~l~~~l~~~------~~~~~~lde~d~ 300 (317)
+.. -++....|| .+.. .+.-.-+++++.||..|.+.|+.+ .+.+.++|||++
T Consensus 130 ~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hr 190 (746)
T KOG0354|consen 130 LIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHR 190 (746)
T ss_pred cCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccc
Confidence 765 344444455 3332 333344559999999999988886 355677888865
No 117
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.06 E-value=3.7e-10 Score=117.77 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=76.5
Q ss_pred hhhhcccCcCCCCCCCcCCCCCCCCchhhhhcc----ccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCC
Q psy10677 144 SYILGPMKPKTTNNENNHNKNKKCGDKESKNWT----IPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLE 219 (317)
Q Consensus 144 ~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip----~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~ 219 (317)
+.+.+.+...||+ + .+.|.+.+. .+. .|++++ +.||||+|||+||++|++.+.. .
T Consensus 233 ~~~~~~~~~~~~~-~---------r~~Q~~~~~~i~~~~~--~~~~~~----~eA~TG~GKT~ayLlp~~~~~~-~---- 291 (850)
T TIGR01407 233 SLFSKNIDRLGLE-Y---------RPEQLKLAELVLDQLT--HSEKSL----IEAPTGTGKTLGYLLPALYYAI-T---- 291 (850)
T ss_pred HHHHHhhhhcCCc-c---------CHHHHHHHHHHHHHhc--cCCcEE----EECCCCCchhHHHHHHHHHHhc-C----
Confidence 3556667677777 6 899998665 555 789999 9999999999999999988765 1
Q ss_pred CCCCceEEEEcCcHHHHHHHHH-HHHHHhcCCC--cEEEEEECCCC
Q psy10677 220 EGDGPIALVLAPTRELAQQIQA-VISIFSRTMR--IRHACLYGGTS 262 (317)
Q Consensus 220 ~~~~~~alil~PtreLa~Qi~~-~~~~l~~~~~--~~~~~~~gg~~ 262 (317)
+-+++|.+||++|+.|+.. .+..+.+.++ ++++.+.|+.+
T Consensus 292 ---~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ 334 (850)
T TIGR01407 292 ---EKPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSN 334 (850)
T ss_pred ---CCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchh
Confidence 3489999999999999865 6777766554 89999998864
No 118
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=3.3e-10 Score=111.31 Aligned_cols=97 Identities=18% Similarity=0.062 Sum_probs=74.6
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~ 271 (317)
+.|+||||||.+|+..+...+ . .+.++|||+|+++|+.|+++.+++.. +.+++.++|+.+..+....+.
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l-~-------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~ 70 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVL-A-------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWR 70 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHH
Confidence 569999999999976544443 3 25689999999999999999888753 467889999988766544432
Q ss_pred -------CcEEECcHHHHHHHhcCCCCCCCCchhHHH
Q psy10677 272 -------ILTSATNTSLGIYLQQNDAHSPCLSVWRRL 301 (317)
Q Consensus 272 -------~ilv~TP~~l~~~l~~~~~~~~~lde~d~l 301 (317)
.|+|||+..+. .--.++.+.++||.+..
T Consensus 71 ~~~~g~~~IVVGTrsalf--~p~~~l~lIIVDEeh~~ 105 (505)
T TIGR00595 71 KVKNGEILVVIGTRSALF--LPFKNLGLIIVDEEHDS 105 (505)
T ss_pred HHHcCCCCEEECChHHHc--CcccCCCEEEEECCCcc
Confidence 28999999875 34468899999998643
No 119
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.02 E-value=7.1e-10 Score=114.67 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=68.1
Q ss_pred Cchhhhhc---cccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH-HHHH
Q psy10677 168 GDKESKNW---TIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI-QAVI 243 (317)
Q Consensus 168 t~iQ~~~i---p~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi-~~~~ 243 (317)
.+-|.+.. -..++ ++..++ +.|+||||||+||++|++.+. .+.++||++||++|+.|+ .+.+
T Consensus 247 R~~Q~~ma~~V~~~l~-~~~~~~----~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i 312 (820)
T PRK07246 247 RPKQESFAKLVGEDFH-DGPASF----IEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEV 312 (820)
T ss_pred CHHHHHHHHHHHHHHh-CCCcEE----EECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHH
Confidence 88898844 33332 788899 999999999999999988753 246899999999999999 5888
Q ss_pred HHHhcCCCcEEEEEECCCC
Q psy10677 244 SIFSRTMRIRHACLYGGTS 262 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~ 262 (317)
..+.+.+++++.++.||.+
T Consensus 313 ~~l~~~~~~~~~~~kg~~~ 331 (820)
T PRK07246 313 KAIQEVFHIDCHSLKGPQN 331 (820)
T ss_pred HHHHHhcCCcEEEEECCcc
Confidence 9999888999999998866
No 120
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.01 E-value=2.9e-10 Score=111.31 Aligned_cols=117 Identities=17% Similarity=0.252 Sum_probs=100.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||++.++..+++.++.+|..+.+...+ ....+++|+++.+...+|...|.+++.
T Consensus 275 ~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~ 353 (475)
T PRK01297 275 LFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEE 353 (475)
T ss_pred EEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 589999999999999999999998887766 566788888888888888888877664
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||++++ .|++|+.++||| +||+|+ .++..+++|++|... .++++
T Consensus 354 ~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi------~~v~~VI~~~~P~s~------~~y~Q 421 (475)
T PRK01297 354 RLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI------DGISHVINFTLPEDP------DDYVH 421 (475)
T ss_pred HHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc------cCCCEEEEeCCCCCH------HHHHH
Confidence 8999998 999999999999 999999 899999999998754 68889
Q ss_pred HHHHHCCceeecCCC
Q psy10677 116 SFRKEHNITLIGQNI 130 (317)
Q Consensus 116 ~~~~~~~i~~~g~~~ 130 (317)
+.++.++....|..+
T Consensus 422 r~GRaGR~g~~g~~i 436 (475)
T PRK01297 422 RIGRTGRAGASGVSI 436 (475)
T ss_pred hhCccCCCCCCceEE
Confidence 888888876666543
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.98 E-value=1.7e-09 Score=110.08 Aligned_cols=119 Identities=12% Similarity=0.011 Sum_probs=99.3
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|...-=.+. .|+ + +...||+|||++..+|++..... |..+.|++||.-||.|-++.+..+.
T Consensus 84 ydVQliGg~~Lh--~G~--i----aEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 84 FDVQLIGGMTLH--EGK--I----AEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred chhHHHhhhHhc--cCc--c----ccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 899987765555 555 6 67899999999999999876653 6789999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHH-HHHHh----c-------CCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSL-GIYLQ----Q-------NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l-~~~l~----~-------~~~~~~~lde~d~l~ 302 (317)
+.+|+++.+++++.+..+....... |++||..-+ .|+|. . ..+.+..+||+|.+|
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 9999999999999988877776655 999999987 23333 3 477889999999875
No 122
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.96 E-value=3.5e-09 Score=107.43 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=98.5
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
...|.-....++ .|++.- +.||||.|||.--++-.+ .+.. .|-+++|++||.-|+.|+++.++++.
T Consensus 84 ws~QR~WakR~~--rg~SFa----iiAPTGvGKTTfg~~~sl-~~a~-------kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 84 WSAQRVWAKRLV--RGKSFA----IIAPTGVGKTTFGLLMSL-YLAK-------KGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred hHHHHHHHHHHH--cCCceE----EEcCCCCchhHHHHHHHH-HHHh-------cCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 999999999999 999999 999999999964444333 3332 25799999999999999999999999
Q ss_pred cCCC-cEEEEEE-CCCCHHHHHH---HccC----cEEECcHHHHHH---HhcCCCCCCCCch----------hHHHhhhc
Q psy10677 248 RTMR-IRHACLY-GGTSKMYQVI---LLRI----LTSATNTSLGIY---LQQNDAHSPCLSV----------WRRLQDIL 305 (317)
Q Consensus 248 ~~~~-~~~~~~~-gg~~~~~~~~---~~~~----ilv~TP~~l~~~---l~~~~~~~~~lde----------~d~l~~~~ 305 (317)
...+ .++.++| |-.+..+..+ .+.+ |+|+|.+-|... |.+.+.+|..+|. .|+++..+
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~Ll 229 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLRLL 229 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHHHHc
Confidence 7655 5544434 4445444333 3333 899999888644 4445778877773 57899999
Q ss_pred CCcHHHH
Q psy10677 306 GLTEETC 312 (317)
Q Consensus 306 gf~~~~~ 312 (317)
||.++..
T Consensus 230 Gf~eE~i 236 (1187)
T COG1110 230 GFSEEVI 236 (1187)
T ss_pred CCCHHHH
Confidence 9999865
No 123
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.95 E-value=2.2e-09 Score=107.13 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=62.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh-cC--CCcEEEEEE
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS-RT--MRIRHACLY 258 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~-~~--~~~~~~~~~ 258 (317)
.++.++ +.|+||||||+||++|++..+... .+.++||++||++|+.|+.+.+..+. +. .+++++++.
T Consensus 15 ~~~~ll----iEA~TGtGKTlAYLlpal~~~~~~------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lk 84 (636)
T TIGR03117 15 QKRIGM----LEASTGVGKTLAMIMAALTMLKER------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFP 84 (636)
T ss_pred cCCeEE----EEcCCCCcHHHHHHHHHHHHHHhc------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 778888 999999999999999999887632 25799999999999999999999988 43 368889999
Q ss_pred CCCCH
Q psy10677 259 GGTSK 263 (317)
Q Consensus 259 gg~~~ 263 (317)
|+.+.
T Consensus 85 Gr~nY 89 (636)
T TIGR03117 85 GSQEF 89 (636)
T ss_pred CCccc
Confidence 88663
No 124
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.90 E-value=3.3e-09 Score=107.51 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=101.9
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+-=.+. .|+ + +.-.||+|||++..+|++..... |-++-|++||..||.|-++.+..+.
T Consensus 82 ~dvQlig~l~l~--~G~--i----aEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 82 FDVQIIGGIVLH--EGN--I----AEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred chhHHHHHHHHh--cCC--c----ccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 899988776666 777 6 78999999999999999887764 6789999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhcC-----------CCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQN-----------DAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~~-----------~~~~~~lde~d~l~ 302 (317)
+.+|+++++++|+.+..+....... |+-||+..+. |+|..+ .+++..+||+|.+|
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 9999999999999988877777665 9999999885 455442 57788899999865
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.89 E-value=5.3e-09 Score=104.34 Aligned_cols=120 Identities=10% Similarity=0.016 Sum_probs=102.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+.-.++ .|+ + +.-.||+|||++..+|++..... |-.+.|++||..||.|-++.+..+.
T Consensus 80 ydvQlig~l~Ll--~G~--V----aEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 80 FDVQLLGALRLL--AGD--V----IEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred chHHHHHHHHHh--CCC--c----ccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 999999998888 774 5 67899999999999999877654 6789999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhc-----------CCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQ-----------NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~-----------~~~~~~~lde~d~l~~ 303 (317)
+.+|+++.++.++.+..+....... |+-||...+. |+|.. ..+++..+||+|.+|-
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI 212 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV 212 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee
Confidence 9999999999999998877777655 9999999874 34333 3577899999998764
No 126
>KOG0337|consensus
Probab=98.85 E-value=2.2e-09 Score=99.61 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=96.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||+|..+-++++..+.+|+.|.+.-++ ...++++..++.+...+|..+|..+++
T Consensus 200 lfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~ 278 (529)
T KOG0337|consen 200 LFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVR 278 (529)
T ss_pred EEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHH
Confidence 699999999999999999999999988777 688899999999999999999999886
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+.|.|.| +|+.++..+||. |||+|| .-..+++||+.|..+.+ -+
T Consensus 279 ~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~di------plldnvinyd~p~~~kl------Fv 346 (529)
T KOG0337|consen 279 GLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDI------PLLDNVINYDFPPDDKL------FV 346 (529)
T ss_pred HHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCC------ccccccccccCCCCCce------EE
Confidence 6777777 899999999977 999999 77889999998765522 24
Q ss_pred HHHHHHCCceeecC
Q psy10677 115 DSFRKEHNITLIGQ 128 (317)
Q Consensus 115 ~~~~~~~~i~~~g~ 128 (317)
|+..+..++...|.
T Consensus 347 hRVgr~aragrtg~ 360 (529)
T KOG0337|consen 347 HRVGRVARAGRTGR 360 (529)
T ss_pred EEecchhhccccce
Confidence 55555554444443
No 127
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.79 E-value=5e-09 Score=110.96 Aligned_cols=108 Identities=18% Similarity=0.117 Sum_probs=71.8
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc--C----cHHHHHHHHHHHHH-HhcCCCcEE
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA--P----TRELAQQIQAVISI-FSRTMRIRH 254 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~--P----treLa~Qi~~~~~~-l~~~~~~~~ 254 (317)
++..++ ++|+||||||. .+|.+..-.. .+..+.|+| | +++||.||.+++.. ++...|.++
T Consensus 88 ~~~Vvi----I~GeTGSGKTT--qlPq~lle~g-------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v 154 (1294)
T PRK11131 88 DHQVVI----VAGETGSGKTT--QLPKICLELG-------RGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV 154 (1294)
T ss_pred hCCeEE----EECCCCCCHHH--HHHHHHHHcC-------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee
Confidence 555667 88999999999 5885433211 122223332 4 78999999998875 444444332
Q ss_pred EEEECCCCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhH-HHhhhcCCcHH
Q psy10677 255 ACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWR-RLQDILGLTEE 310 (317)
Q Consensus 255 ~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d-~l~~~~gf~~~ 310 (317)
....+...-..|+++|||+|++.+.. ..++..+||||| ++++ ++|...
T Consensus 155 -------rf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn-~DfLLg 207 (1294)
T PRK11131 155 -------RFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLN-IDFILG 207 (1294)
T ss_pred -------cCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccc-cchHHH
Confidence 11222222234999999999999886 367788999999 6888 777653
No 128
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.77 E-value=6.6e-09 Score=87.70 Aligned_cols=123 Identities=12% Similarity=0.006 Sum_probs=81.6
Q ss_pred CCCchhhhhcccccc---c--cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN---F--QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~---~--~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
++++.|.+|+-.+.+ . ..+.++ +.+|||||||.+++-.+.. +.. .+++++|+..|+.|..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~l----l~~~tGsGKT~~~~~~~~~-l~~----------~~l~~~p~~~l~~Q~~ 67 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVL----LNAPTGSGKTIIALALILE-LAR----------KVLIVAPNISLLEQWY 67 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEE----EEESTTSSHHHHHHHHHHH-HHC----------EEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEE----EEECCCCCcChhhhhhhhc-ccc----------ceeEecCHHHHHHHHH
Confidence 458999999988883 0 257888 9999999999998864443 331 8999999999999999
Q ss_pred HHHHHHhcCCCcEEEE-----------EECCCCHHH-HHHHcc--CcEEECcHHHHHHHhc----------------CCC
Q psy10677 241 AVISIFSRTMRIRHAC-----------LYGGTSKMY-QVILLR--ILTSATNTSLGIYLQQ----------------NDA 290 (317)
Q Consensus 241 ~~~~~l~~~~~~~~~~-----------~~gg~~~~~-~~~~~~--~ilv~TP~~l~~~l~~----------------~~~ 290 (317)
+.+..+.......... ......... ...... .++++|...+...... ...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 68 DEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 9997776542111000 001111111 111111 1799999999877654 245
Q ss_pred CCCCCchhHHHhh
Q psy10677 291 HSPCLSVWRRLQD 303 (317)
Q Consensus 291 ~~~~lde~d~l~~ 303 (317)
++.++||++..-.
T Consensus 148 ~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 148 DLVIIDEAHHYPS 160 (184)
T ss_dssp SEEEEETGGCTHH
T ss_pred CEEEEehhhhcCC
Confidence 6888999987665
No 129
>PTZ00424 helicase 45; Provisional
Probab=98.74 E-value=6.2e-09 Score=99.53 Aligned_cols=115 Identities=23% Similarity=0.287 Sum_probs=88.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC-CCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE-YEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~-~~K~~~L~~ll~--------------------- 58 (317)
+||||+|.++.++...++.+|..+.+.... ....++++++..++. ..+...+..++.
T Consensus 206 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~ 284 (401)
T PTZ00424 206 LFSATMPNEILELTTKFMRDPKRILVKKDE-LTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLT 284 (401)
T ss_pred EEEecCCHHHHHHHHHHcCCCEEEEeCCCC-cccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHH
Confidence 589999999999999999999888776655 355677777776654 224444444332
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|++ .|++|+.+|||| +||+|+ .++..+++|+.|... .+++
T Consensus 285 ~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDi------p~v~~VI~~~~p~s~------~~y~ 352 (401)
T PTZ00424 285 KKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDV------QQVSLVINYDLPASP------ENYI 352 (401)
T ss_pred HHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCc------ccCCEEEEECCCCCH------HHEe
Confidence 9999997 899999999999 999999 899999999988643 5667
Q ss_pred HHHHHHCCceeecC
Q psy10677 115 DSFRKEHNITLIGQ 128 (317)
Q Consensus 115 ~~~~~~~~i~~~g~ 128 (317)
++.++..+.+-.|.
T Consensus 353 qr~GRagR~g~~G~ 366 (401)
T PTZ00424 353 HRIGRSGRFGRKGV 366 (401)
T ss_pred ecccccccCCCCce
Confidence 77776666544443
No 130
>KOG0350|consensus
Probab=98.74 E-value=4.8e-09 Score=99.21 Aligned_cols=118 Identities=18% Similarity=0.188 Sum_probs=96.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcC---CCCCCCcCcEEEEEEccCCCchhhhhhhcc-------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGS---ANLAANPNIKQFVEICHEYEKPAKWWDSNN------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~---~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~------------------- 58 (317)
+||||++..-.++...-++.|....+.. .-.+.++.++|+++.++..-|.-++..+++
T Consensus 365 ~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 365 VFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANR 444 (620)
T ss_pred hcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHH
Confidence 5899999999999999999995444331 122567788999998888777777776664
Q ss_pred ------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCC
Q psy10677 59 ------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQG 108 (317)
Q Consensus 59 ------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~ 108 (317)
+.|.+++ .|..|.+++||| |||+|+ -++.+|+||++|...
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv------~~v~~VINYd~P~~~---- 514 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDV------NDVDNVINYDPPASD---- 514 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcc------cccceEeecCCCchh----
Confidence 4455555 999999999999 999999 899999999999765
Q ss_pred CCHHHHHHHHHHCCceeecCCC
Q psy10677 109 KTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 109 ~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
..++|+.+++.+++-.|..+
T Consensus 515 --ktyVHR~GRTARAgq~G~a~ 534 (620)
T KOG0350|consen 515 --KTYVHRAGRTARAGQDGYAI 534 (620)
T ss_pred --hHHHHhhcccccccCCceEE
Confidence 79999999999998888765
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.72 E-value=3.2e-08 Score=100.53 Aligned_cols=119 Identities=17% Similarity=0.105 Sum_probs=97.7
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+.=.+. .| -+ +...||.|||+++.+|+.-..+ .|-.+.|++++..||.+-++++..+-
T Consensus 78 ydvQlig~l~L~--~G--~I----aEm~TGEGKTL~a~l~ayl~aL--------~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 78 FDVQLIGGLVLN--DG--KI----AEMKTGEGKTLVATLPAYLNAL--------TGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred CchHhhhhHhhc--CC--cc----ccccCCCCchHHHHHHHHHHHh--------cCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 889987764444 44 46 7899999999999999965443 25679999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhc-----------CCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQ-----------NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~-----------~~~~~~~lde~d~l~ 302 (317)
+.+|+++.++.++.+..+....... |+-||+..+. |+|.. ..+++..+||+|.+|
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9999999999999999887777766 9999998664 44433 367789999999875
No 132
>KOG0352|consensus
Probab=98.69 E-value=2.4e-08 Score=92.99 Aligned_cols=116 Identities=13% Similarity=0.136 Sum_probs=86.4
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
|+.|.+|+.++.. ...||. ++.|||+||+|||.||.|.+ +...+|+.|.-+|...+-+.+..+
T Consensus 22 s~LQE~A~~c~VK-~k~DVy----VsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIkDQiDHL~~L- 84 (641)
T KOG0352|consen 22 SRLQEQAINCIVK-RKCDVY----VSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIKDQIDHLKRL- 84 (641)
T ss_pred ChHHHHHHHHHHh-ccCcEE----EeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHHHHHHHHHhc-
Confidence 8899999999883 456999 99999999999999999853 238899999877775555544443
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC---------cEEECcHH---------HHHHHhcCCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI---------LTSATNTS---------LGIYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~---------ilv~TP~~---------l~~~l~~~~~~~~~lde~d~l~~ 303 (317)
.+.+..+.+..+..+....+.+ ++--||.. |..+.+++.+.+.++|||+.+-.
T Consensus 85 ---KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 85 ---KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred ---CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhh
Confidence 5566666666776665544433 68889973 22344557899999999988765
No 133
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.69 E-value=2e-08 Score=106.59 Aligned_cols=126 Identities=10% Similarity=-0.035 Sum_probs=84.6
Q ss_pred CCCchhhhhcccccc---ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN---FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~---~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
.+.+.|.+|+..+.. ...+..+ ++.+||||||.+. +.++.++.+. ....++|+|+|+++|+.|..+.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~L----l~maTGSGKT~ta-i~li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREIL----LAMATGTGKTRTA-IALMYRLLKA-----KRFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeE----EEeCCCCCHHHHH-HHHHHHHHhc-----CccCeEEEEecHHHHHHHHHHH
Confidence 459999999987752 1236788 9999999999883 4556666553 2346999999999999999999
Q ss_pred HHHHhcCCCcEEEEEECCCCHHHHHHH-ccCcEEECcHHHHHHHhc----------CCCCCCCCchhHHH
Q psy10677 243 ISIFSRTMRIRHACLYGGTSKMYQVIL-LRILTSATNTSLGIYLQQ----------NDAHSPCLSVWRRL 301 (317)
Q Consensus 243 ~~~l~~~~~~~~~~~~gg~~~~~~~~~-~~~ilv~TP~~l~~~l~~----------~~~~~~~lde~d~l 301 (317)
++.+.-..+.....+++.......... -..|+|+|...+...+.. +..++.++|||++-
T Consensus 483 F~~~~~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs 552 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRG 552 (1123)
T ss_pred HHhcccccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCC
Confidence 988743322222223322211111111 134899999998765421 34668889999985
No 134
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=5.4e-08 Score=98.37 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=84.1
Q ss_pred CCchhhhhccccccccC--cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQA--KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
+.|.|.+|+...+. .| +.-+ ++.|||+|||+..+..+ .++ +-.+|||||+.+|+.|..+++.
T Consensus 256 LRpYQ~eAl~~~~~-~gr~r~GI----IvLPtGaGKTlvai~aa-~~l----------~k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 256 IRPYQEKSLSKMFG-NGRARSGI----IVLPCGAGKSLVGVTAA-CTV----------KKSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred cCHHHHHHHHHHHh-cCCCCCcE----EEeCCCCChHHHHHHHH-HHh----------CCCEEEEeCcHHHHHHHHHHHH
Confidence 38999999988773 33 4677 89999999999876544 333 1359999999999999999999
Q ss_pred HHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHH-------------HHHhcCCCCCCCCchhHHH
Q psy10677 245 IFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLG-------------IYLQQNDAHSPCLSVWRRL 301 (317)
Q Consensus 245 ~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~-------------~~l~~~~~~~~~lde~d~l 301 (317)
++.......+..++|+..... .....|+|+|...+. +.+......+.++||++.+
T Consensus 320 ~~~~l~~~~I~~~tg~~k~~~--~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~l 387 (732)
T TIGR00603 320 MWSTIDDSQICRFTSDAKERF--HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVV 387 (732)
T ss_pred HhcCCCCceEEEEecCccccc--ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccc
Confidence 987544556666666543211 112348999997653 3344456778999998765
No 135
>KOG0951|consensus
Probab=98.65 E-value=9e-08 Score=98.90 Aligned_cols=134 Identities=15% Similarity=0.065 Sum_probs=102.3
Q ss_pred CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 153 KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 153 ~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
.+..+|.+---+..++|+|.++++.+.+ +..+|+ +.||+|||||.|.-+.++. .....+|++++|.
T Consensus 1130 ~~l~N~~~~~lf~~~n~iqtqVf~~~y~-~nd~v~----vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~ 1195 (1674)
T KOG0951|consen 1130 SALRNPSFETLFQDFNPIQTQVFTSLYN-TNDNVL----VGAPNGSGKTACAELALLR---------PDTIGRAVYIAPL 1195 (1674)
T ss_pred hccCCcchhhhccccCCceEEEEeeeec-ccceEE----EecCCCCchhHHHHHHhcC---------CccceEEEEecch
Confidence 3444554433344449999999999996 778899 9999999999999998875 1346799999999
Q ss_pred HHHHHHHHHHHH-HHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcCCCCCCCCchhHH
Q psy10677 233 RELAQQIQAVIS-IFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQNDAHSPCLSVWRR 300 (317)
Q Consensus 233 reLa~Qi~~~~~-~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~~~~~~~lde~d~ 300 (317)
.+.+...+..+. +|.+..|.+++.++|..+.+.......+++|+||.+.-.+=.-..+++...||+..
T Consensus 1196 ~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~lq~iQ~v~l~i~d~lh~ 1264 (1674)
T KOG0951|consen 1196 EEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQWDLLQSIQQVDLFIVDELHL 1264 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEEechhHHHHHhhhhhcceEeeehhhh
Confidence 999988877665 56667799999999999988777777779999999865442223455555555543
No 136
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.61 E-value=1.3e-07 Score=86.63 Aligned_cols=73 Identities=8% Similarity=-0.059 Sum_probs=58.5
Q ss_pred CCchhhhh----ccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 167 CGDKESKN----WTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 167 ~t~iQ~~~----ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
++|.|.+. ...+. .|.+++ +.||||+|||++|++|++..+...+.. ..+.+.++.++|..+..|....
T Consensus 9 ~r~~Q~~~m~~v~~~~~--~~~~~~----~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 9 PYPIQYEFMEELKRVLD--RGKIGI----LESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCHHHHHHHHHHHHHHH--cCCcEE----EECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHH
Confidence 39999994 44455 788999 999999999999999999887654211 1245899999999999998888
Q ss_pred HHHHh
Q psy10677 243 ISIFS 247 (317)
Q Consensus 243 ~~~l~ 247 (317)
++++.
T Consensus 81 l~~~~ 85 (289)
T smart00488 81 LRKLM 85 (289)
T ss_pred HHhcc
Confidence 87764
No 137
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.61 E-value=1.3e-07 Score=86.63 Aligned_cols=73 Identities=8% Similarity=-0.059 Sum_probs=58.5
Q ss_pred CCchhhhh----ccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 167 CGDKESKN----WTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 167 ~t~iQ~~~----ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
++|.|.+. ...+. .|.+++ +.||||+|||++|++|++..+...+.. ..+.+.++.++|..+..|....
T Consensus 9 ~r~~Q~~~m~~v~~~~~--~~~~~~----~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 9 PYPIQYEFMEELKRVLD--RGKIGI----LESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CCHHHHHHHHHHHHHHH--cCCcEE----EECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHH
Confidence 39999994 44455 788999 999999999999999999887654211 1245899999999999998888
Q ss_pred HHHHh
Q psy10677 243 ISIFS 247 (317)
Q Consensus 243 ~~~l~ 247 (317)
++++.
T Consensus 81 l~~~~ 85 (289)
T smart00489 81 LRKLM 85 (289)
T ss_pred HHhcc
Confidence 87764
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.59 E-value=1.6e-07 Score=95.62 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=98.8
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+-=.+. .|+ + +...||.|||++..+|+.-..+. |-.+.|++++..||.+=.+++..+.
T Consensus 87 ydVQliGgl~Lh--~G~--I----AEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 87 FDVQLIGGMVLH--EGQ--I----AEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred chhHHHhhhhhc--CCc--e----eeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 889987765666 665 6 78999999999999999876553 5679999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHH-----HHHHhc-------CCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSL-----GIYLQQ-------NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l-----~~~l~~-------~~~~~~~lde~d~l~ 302 (317)
+.+|+++.++.++.+..+....... |+.||++.+ -|.|.. ..+++..+||+|.+|
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 9999999999999988877777655 999999998 333332 367788899999865
No 139
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.58 E-value=3.4e-07 Score=82.40 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=96.3
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.+.|..++=.+. .|+ + +.-.||-|||++..+|..-..+. |-.+-|++.+..||..=++.+..+.
T Consensus 79 ~~vQll~~l~L~--~G~--l----aEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 79 YDVQLLGALALH--KGR--L----AEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp -HHHHHHHHHHH--TTS--E----EEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cHHHHhhhhhcc--cce--e----EEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 999999986666 776 6 78999999999998888776653 5678999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhcC-----------CCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQN-----------DAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~~-----------~~~~~~lde~d~l~ 302 (317)
+.+|+++.+++++.+..+....... |+-||++.+. |+|..+ ..++..+||+|.++
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999999987765555544 9999999986 455542 56678899999887
No 140
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.58 E-value=7.4e-08 Score=93.44 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=81.3
Q ss_pred CCchhhhhcccccccc----CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQ----AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~----g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
+.+.|.+|+..+. . ++..+ ++.|||+|||..++-.+-. + +..+||||||++|+.|-++.
T Consensus 37 lr~yQ~~al~a~~--~~~~~~~~gv----ivlpTGaGKT~va~~~~~~-~----------~~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 37 LRPYQEEALDALV--KNRRTERRGV----IVLPTGAGKTVVAAEAIAE-L----------KRSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CcHHHHHHHHHHH--hhcccCCceE----EEeCCCCCHHHHHHHHHHH-h----------cCCEEEEECcHHHHHHHHHH
Confidence 4999999999998 6 88899 9999999999988665532 1 22399999999999999866
Q ss_pred HHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHH-----HhcCCCCCCCCchhHHHhh
Q psy10677 243 ISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIY-----LQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 243 ~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~-----l~~~~~~~~~lde~d~l~~ 303 (317)
+....... -.+.. +||..+.... ..|.|+|=..+... +..+...+.++||++.+-.
T Consensus 100 ~~~~~~~~-~~~g~-~~~~~~~~~~---~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a 160 (442)
T COG1061 100 LKKFLLLN-DEIGI-YGGGEKELEP---AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA 160 (442)
T ss_pred HHHhcCCc-cccce-ecCceeccCC---CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc
Confidence 66655432 12233 4443332211 45888888777652 2234688999999876654
No 141
>KOG0353|consensus
Probab=98.57 E-value=7.8e-08 Score=88.41 Aligned_cols=132 Identities=14% Similarity=0.095 Sum_probs=95.8
Q ss_pred cCCCCChhhhcccCcC-CCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCC
Q psy10677 138 DETNIPSYILGPMKPK-TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMP 216 (317)
Q Consensus 138 ~~~~l~~~l~~~l~~~-g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~ 216 (317)
++++.+.+..+.|++. .+++. .|.|..+|...+ .|+|++ ++-|||.||++||.||.|-
T Consensus 74 d~fpws~e~~~ilk~~f~lekf---------rplq~~ain~~m--a~ed~~----lil~tgggkslcyqlpal~------ 132 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKF---------RPLQLAAINATM--AGEDAF----LILPTGGGKSLCYQLPALC------ 132 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhc---------ChhHHHHhhhhh--ccCceE----EEEeCCCccchhhhhhHHh------
Confidence 5566777777777764 34444 999999999999 999999 9999999999999999973
Q ss_pred CCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHH---HccC------cEEECcHHHHH---H
Q psy10677 217 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVI---LLRI------LTSATNTSLGI---Y 284 (317)
Q Consensus 217 ~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~---~~~~------ilv~TP~~l~~---~ 284 (317)
....+||+||.-.|.....-+++.+ |+...++...+++.+... .+.+ .+-.||..+.. +
T Consensus 133 -----adg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~ 203 (695)
T KOG0353|consen 133 -----ADGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKF 203 (695)
T ss_pred -----cCCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHH
Confidence 2458999999888887666665554 677777766666554321 1111 68899998752 2
Q ss_pred -------HhcCCCCCCCCchhH
Q psy10677 285 -------LQQNDAHSPCLSVWR 299 (317)
Q Consensus 285 -------l~~~~~~~~~lde~d 299 (317)
+.-+.+.+..+||..
T Consensus 204 mnkleka~~~~~~~~iaidevh 225 (695)
T KOG0353|consen 204 MNKLEKALEAGFFKLIAIDEVH 225 (695)
T ss_pred HHHHHHHhhcceeEEEeeccee
Confidence 233556666677654
No 142
>KOG0351|consensus
Probab=98.56 E-value=4e-08 Score=101.73 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=92.4
Q ss_pred CCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 165 KKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 165 ~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
..+.+-|.+||-..+ .|+|++ +..|||.||.+||.||++- .++..|||.|...|. .+++.
T Consensus 263 ~~FR~~Q~eaI~~~l--~Gkd~f----vlmpTG~GKSLCYQlPA~l-----------~~gitvVISPL~SLm---~DQv~ 322 (941)
T KOG0351|consen 263 KGFRPNQLEAINATL--SGKDCF----VLMPTGGGKSLCYQLPALL-----------LGGVTVVISPLISLM---QDQVT 322 (941)
T ss_pred ccCChhHHHHHHHHH--cCCceE----EEeecCCceeeEeeccccc-----------cCCceEEeccHHHHH---HHHHH
Confidence 345999999999999 999999 9999999999999999873 244899999977777 55566
Q ss_pred HHhcCCCcEEEEEECCCCHHHHHHHccC---------cEEECcHHHHH----------HHhcCCCCCCCCchhHHHhh
Q psy10677 245 IFSRTMRIRHACLYGGTSKMYQVILLRI---------LTSATNTSLGI----------YLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 245 ~l~~~~~~~~~~~~gg~~~~~~~~~~~~---------ilv~TP~~l~~----------~l~~~~~~~~~lde~d~l~~ 303 (317)
++.+ .+|+..++.++....++...+.. |+--||..+.. +-..+.+.+.++|||..+-.
T Consensus 323 ~L~~-~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSq 399 (941)
T KOG0351|consen 323 HLSK-KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQ 399 (941)
T ss_pred hhhh-cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhh
Confidence 6643 48999999999988755443322 68889987752 12224588999999998766
No 143
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.55 E-value=1.7e-07 Score=97.24 Aligned_cols=121 Identities=17% Similarity=0.022 Sum_probs=102.4
Q ss_pred CCchhhhhcccccc----ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLN----FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~----~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
-|+=|..||..+.. ..-.|=+ +||..|=|||-..+=++.-.++ +|.++.|||||--||+|.++.
T Consensus 595 ET~DQl~AI~eVk~DM~~~kpMDRL----iCGDVGFGKTEVAmRAAFkAV~--------~GKQVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 595 ETPDQLKAIEEVKRDMESGKPMDRL----ICGDVGFGKTEVAMRAAFKAVM--------DGKQVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred CCHHHHHHHHHHHHHhccCCcchhe----eecCcCCcHHHHHHHHHHHHhc--------CCCeEEEEcccHHhHHHHHHH
Confidence 39999999988874 2235888 9999999999988777765554 478999999999999999999
Q ss_pred HHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECcHHHHHHHhcCCCCCCCCchhH
Q psy10677 243 ISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATNTSLGIYLQQNDAHSPCLSVWR 299 (317)
Q Consensus 243 ~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP~~l~~~l~~~~~~~~~lde~d 299 (317)
++.-.+++++++..+..=.+..++...++. |||||..-|..-++.+++.++++||=.
T Consensus 663 FkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEq 726 (1139)
T COG1197 663 FKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQ 726 (1139)
T ss_pred HHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechh
Confidence 999999999999999887888887776655 799999777777788899999999743
No 144
>PRK09694 helicase Cas3; Provisional
Probab=98.50 E-value=5.3e-07 Score=93.46 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=61.5
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+|+|..+..... .+.-++ +.||||||||.|.+..+. ++... +...++++..||++++.|+++.++++.
T Consensus 288 ~p~Q~~~~~~~~--~pgl~i----leApTGsGKTEAAL~~A~-~l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~ 355 (878)
T PRK09694 288 RQLQTLVDALPL--QPGLTI----IEAPTGSGKTEAALAYAW-RLIDQ-----GLADSIIFALPTQATANAMLSRLEALA 355 (878)
T ss_pred hHHHHHHHhhcc--CCCeEE----EEeCCCCCHHHHHHHHHH-HHHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHH
Confidence 999998754434 556678 999999999999877655 44332 234689999999999999999998765
Q ss_pred cCC--CcEEEEEECCCC
Q psy10677 248 RTM--RIRHACLYGGTS 262 (317)
Q Consensus 248 ~~~--~~~~~~~~gg~~ 262 (317)
+.. ...+.+++|+..
T Consensus 356 ~~~f~~~~v~L~Hg~a~ 372 (878)
T PRK09694 356 SKLFPSPNLILAHGNSR 372 (878)
T ss_pred HHhcCCCceEeecCcch
Confidence 432 345677776653
No 145
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.49 E-value=1e-07 Score=97.56 Aligned_cols=110 Identities=11% Similarity=0.031 Sum_probs=78.9
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhh----cc------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDS----NN------------------ 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~l----l~------------------ 58 (317)
|||||+|.++.++++.++++|..+.+.... ....++.|+ +.++.+.|...+... +.
T Consensus 210 LFSAT~p~ei~~l~~~~~~~p~~i~V~~~~-l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~ 287 (844)
T TIGR02621 210 ELTATSRTDGPDRTTLLSAEDYKHPVLKKR-LAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRK 287 (844)
T ss_pred EEecCCCccHHHHHHHHccCCceeeccccc-ccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHH
Confidence 699999999999999999999888776655 456677775 344544454333222 11
Q ss_pred ------------CCCCccc-------------eeec----Cc-------ccceec----ccccCCcCCCCCCcccccCCC
Q psy10677 59 ------------GHYPKSV-------------RFVL----GT-------AGFLLS----AVSFSLPFRDDKTSVVTVPSY 98 (317)
Q Consensus 59 ------------lhg~~~q-------------~F~~----g~-------~~iLva----arg~~~~lr~~~~d~~~v~nf 98 (317)
|||+|+| +|++ |+ .+|||| +||+|| . ...++++
T Consensus 288 L~~~L~~~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDI------d-~d~VI~d 360 (844)
T TIGR02621 288 VFAKLPKEKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNI------S-ADHLVCD 360 (844)
T ss_pred HHHHHHhcCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccC------C-cceEEEC
Confidence 9999998 3766 44 689999 999999 3 3566665
Q ss_pred CCCCccccCCCCHHHHHHHHHHCCceeec
Q psy10677 99 PDPSVNHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 99 ~~p~~~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
..|. +.+++++++.++..-.|
T Consensus 361 ~aP~--------esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 361 LAPF--------ESMQQRFGRVNRFGELQ 381 (844)
T ss_pred CCCH--------HHHHHHhcccCCCCCCC
Confidence 4442 68999999998875543
No 146
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.47 E-value=1.2e-07 Score=97.43 Aligned_cols=58 Identities=5% Similarity=-0.165 Sum_probs=51.0
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLI 126 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~ 126 (317)
+||+++| +|++|+.++||| +||+|| .+++.+++|+.|... .+++++.+|.++.+..
T Consensus 309 ~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI------~~vd~VI~~~~P~s~------~~y~qRiGRaGR~G~~ 376 (742)
T TIGR03817 309 YRAGYLPEDRRELERALRDGELLGVATTNALELGVDI------SGLDAVVIAGFPGTR------ASLWQQAGRAGRRGQG 376 (742)
T ss_pred eecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCc------ccccEEEEeCCCCCH------HHHHHhccccCCCCCC
Confidence 7999998 899999999999 999999 899999999999754 7899999988876555
Q ss_pred cC
Q psy10677 127 GQ 128 (317)
Q Consensus 127 g~ 128 (317)
|.
T Consensus 377 g~ 378 (742)
T TIGR03817 377 AL 378 (742)
T ss_pred cE
Confidence 54
No 147
>PRK09401 reverse gyrase; Reviewed
Probab=98.46 E-value=9.5e-08 Score=102.00 Aligned_cols=109 Identities=14% Similarity=0.033 Sum_probs=79.5
Q ss_pred CcccCCChH-HHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPRE-IQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~-v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
+||||+++. ++. .+++++..+.++... ....+|.|.|+.++ +|...|..+++
T Consensus 273 lfSAT~~~~~~~~---~l~~~ll~~~v~~~~-~~~rnI~~~yi~~~--~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~ 346 (1176)
T PRK09401 273 VSSATGRPRGNRV---KLFRELLGFEVGSPV-FYLRNIVDSYIVDE--DSVEKLVELVKRLGDGGLIFVPSDKGKEYAEE 346 (1176)
T ss_pred EEeCCCCccchHH---HHhhccceEEecCcc-cccCCceEEEEEcc--cHHHHHHHHHHhcCCCEEEEEecccChHHHHH
Confidence 699999875 443 345677778888776 56788999988776 56666666653
Q ss_pred --------------CCCCccc---eeecCcccceec--------ccccCCcCCCCCCc-ccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV---RFVLGTAGFLLS--------AVSFSLPFRDDKTS-VVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q---~F~~g~~~iLva--------arg~~~~lr~~~~d-~~~v~nf~~p~~~~i~~~~~~ 112 (317)
+||+|.. +|++|+++|||| |||+|+ .+ +..+++|++|.-..-....+.
T Consensus 347 l~~~L~~~gi~v~~~hg~l~~~l~~F~~G~~~VLVatas~tdv~aRGIDi------P~~IryVI~y~vP~~~~~~~~~~~ 420 (1176)
T PRK09401 347 LAEYLEDLGINAELAISGFERKFEKFEEGEVDVLVGVASYYGVLVRGIDL------PERIRYAIFYGVPKFKFSLEEELA 420 (1176)
T ss_pred HHHHHHHCCCcEEEEeCcHHHHHHHHHCCCCCEEEEecCCCCceeecCCC------CcceeEEEEeCCCCEEEecccccc
Confidence 9999854 999999999999 899999 77 678899999974322222344
Q ss_pred HHHHHHHHC
Q psy10677 113 EIDSFRKEH 121 (317)
Q Consensus 113 ~i~~~~~~~ 121 (317)
..+++.+..
T Consensus 421 ~~~~~~r~~ 429 (1176)
T PRK09401 421 PPFLLLRLL 429 (1176)
T ss_pred CHHHHHHHH
Confidence 555555554
No 148
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.46 E-value=1.9e-07 Score=94.46 Aligned_cols=117 Identities=13% Similarity=0.047 Sum_probs=76.7
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC----------CCc---hhhhhhh-----------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE----------YEK---PAKWWDS----------- 56 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~----------~~K---~~~L~~l----------- 56 (317)
+||||+|++++.+ ..|+++|..|.+.. .+...|+|+|+.... .+| ...+...
T Consensus 326 LmSATl~~dv~~l-~~~~~~p~~I~I~g---rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVF 401 (675)
T PHA02653 326 LMTATLEDDRDRI-KEFFPNPAFVHIPG---GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVF 401 (675)
T ss_pred EEccCCcHhHHHH-HHHhcCCcEEEeCC---CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEE
Confidence 6999999999988 57899999888852 234567777753321 111 1111111
Q ss_pred -------------c----------cCCCCccc------ee-ecCcccceec----ccccCCcCCCCCCcccccCCCC---
Q psy10677 57 -------------N----------NGHYPKSV------RF-VLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYP--- 99 (317)
Q Consensus 57 -------------l----------~lhg~~~q------~F-~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~--- 99 (317)
| -|||+|+| +| ++|+.+|||| +||+|| .++..|++++
T Consensus 402 lpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATdIAERGIDI------p~V~~VID~G~~k 475 (675)
T PHA02653 402 VASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTPYLESSVTI------RNATHVYDTGRVY 475 (675)
T ss_pred ECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHhccCceeEEeccChhhccccc------cCeeEEEECCCcc
Confidence 0 09999998 55 7899999999 999999 8999999887
Q ss_pred CCCccc--cCCCC-HHHHHHHHHHCCceeecC
Q psy10677 100 DPSVNH--LQGKT-KEEIDSFRKEHNITLIGQ 128 (317)
Q Consensus 100 ~p~~~~--i~~~~-~~~i~~~~~~~~i~~~g~ 128 (317)
.|.+.. ..-.+ .+.+++-+|.++. ..|.
T Consensus 476 ~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~ 506 (675)
T PHA02653 476 VPEPFGGKEMFISKSMRTQRKGRVGRV-SPGT 506 (675)
T ss_pred CCCcccCcccccCHHHHHHhccCcCCC-CCCe
Confidence 443110 00112 4566776666665 3443
No 149
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.34 E-value=3.1e-07 Score=95.15 Aligned_cols=117 Identities=11% Similarity=-0.008 Sum_probs=89.2
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+-++|++|+-++- .|..|+ ++||||||||.....++-..+.. +-++++.+|.++|..|.++.+...
T Consensus 120 LD~fQ~~a~~~Le--r~esVl----V~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 120 LDPFQQEAIAILE--RGESVL----VCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred cCHHHHHHHHHHh--CCCcEE----EEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHHH
Confidence 3899999999999 999999 99999999999987777666553 345999999999999999988865
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CCCCCCCchhHHH
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DAHSPCLSVWRRL 301 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l 301 (317)
-...-=.+.+++|+.+..... .++|-|-.-|-+++-++ .+..++.||.+=|
T Consensus 186 fgdv~~~vGL~TGDv~IN~~A----~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi 241 (1041)
T COG4581 186 FGDVADMVGLMTGDVSINPDA----PCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYI 241 (1041)
T ss_pred hhhhhhhccceecceeeCCCC----ceEEeeHHHHHHHhccCcccccccceEEEEeeeec
Confidence 543211236677777664322 26777878888888887 4556667765433
No 150
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.33 E-value=1.4e-06 Score=91.92 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=62.4
Q ss_pred CCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH--
Q psy10677 167 CGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV-- 242 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~-- 242 (317)
..+-|.+.+..+.. .++..++ +.||||+|||+||++|++..... .+-+++|-++|+.|..|+...
T Consensus 258 ~R~~Q~~m~~~v~~~l~~~~~~~----iEA~TGtGKTlaYLlpa~~~a~~-------~~~~vvIsT~T~~LQ~Ql~~kDi 326 (928)
T PRK08074 258 KREGQQEMMKEVYTALRDSEHAL----IEAGTGTGKSLAYLLPAAYFAKK-------KEEPVVISTYTIQLQQQLLEKDI 326 (928)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEE----EECCCCCchhHHHHHHHHHHhhc-------cCCeEEEEcCCHHHHHHHHHhhH
Confidence 37888875443321 2778888 99999999999999999876653 356899999999999998763
Q ss_pred --HHHHhcCCCcEEEEEECCCC
Q psy10677 243 --ISIFSRTMRIRHACLYGGTS 262 (317)
Q Consensus 243 --~~~l~~~~~~~~~~~~gg~~ 262 (317)
++++.. .+++++++.|..+
T Consensus 327 P~L~~~~~-~~~~~~~lKGr~n 347 (928)
T PRK08074 327 PLLQKIFP-FPVEAALLKGRSH 347 (928)
T ss_pred HHHHHHcC-CCceEEEEEcccc
Confidence 344332 3678888877644
No 151
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.32 E-value=3.7e-07 Score=97.59 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=70.7
Q ss_pred CcccC-CChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc---------------------
Q psy10677 1 MWSAT-WPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT-~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------- 58 (317)
+|||| +|..++. .+++++..+.++... ....+|.|.|..++. +...|.++++
T Consensus 271 ~~SAT~~p~~~~~---~l~r~ll~~~v~~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~ 344 (1171)
T TIGR01054 271 VSSATGRPRGKRA---KLFRELLGFEVGGGS-DTLRNVVDVYVEDED--LKETLLEIVKKLGTGGIVYVSIDYGKEKAEE 344 (1171)
T ss_pred EEeCCCCccccHH---HHcccccceEecCcc-ccccceEEEEEeccc--HHHHHHHHHHHcCCCEEEEEeccccHHHHHH
Confidence 48999 7876553 456777778888776 577889999876654 2344544443
Q ss_pred --------------CCCCccc----eeecCcccceec--------ccccCCcCCCCCCc-ccccCCCCCCCcc
Q psy10677 59 --------------GHYPKSV----RFVLGTAGFLLS--------AVSFSLPFRDDKTS-VVTVPSYPDPSVN 104 (317)
Q Consensus 59 --------------lhg~~~q----~F~~g~~~iLva--------arg~~~~lr~~~~d-~~~v~nf~~p~~~ 104 (317)
+||+|++ +|++|+++|||| |||+|+ .+ +..+++|++|...
T Consensus 345 l~~~L~~~g~~a~~lhg~~~~~~l~~Fr~G~~~vLVata~~tdv~aRGIDi------p~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 345 IAEFLENHGVKAVAYHATKPKEDYEKFAEGEIDVLIGVASYYGTLVRGLDL------PERVRYAVFLGVPKFK 411 (1171)
T ss_pred HHHHHHhCCceEEEEeCCCCHHHHHHHHcCCCCEEEEeccccCcccccCCC------CccccEEEEECCCCEE
Confidence 9999976 999999999998 899999 67 6889999988654
No 152
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.30 E-value=2.9e-07 Score=92.10 Aligned_cols=120 Identities=5% Similarity=-0.156 Sum_probs=89.6
Q ss_pred cccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc-----------------------
Q psy10677 2 WSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN----------------------- 58 (317)
Q Consensus 2 FSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~----------------------- 58 (317)
||||.+.+.+++.+.|.-+++.|-..... .....+.+++++..+|..+|.+++.
T Consensus 414 mTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~ 490 (656)
T PRK12898 414 MTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLS 490 (656)
T ss_pred ccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHH
Confidence 79999999999999999998776554332 2235566777888889888888773
Q ss_pred ------------CCCCccc------eeecCcccceec----ccccCCcCCC-CCC-cccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV------RFVLGTAGFLLS----AVSFSLPFRD-DKT-SVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q------~F~~g~~~iLva----arg~~~~lr~-~~~-d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
|||++++ .|+.+...|+|| +||+||++.. +.. ...+|++|+.|... ..++
T Consensus 491 ~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~------r~y~ 564 (656)
T PRK12898 491 ALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA------RIDR 564 (656)
T ss_pred HHHHHCCCCEEEeeCCcHHHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH------HHHH
Confidence 9999877 566566689999 9999994322 111 22379999999765 6788
Q ss_pred HHHHHHCCceeecCCC
Q psy10677 115 DSFRKEHNITLIGQNI 130 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~~ 130 (317)
|+.+++.+.+-.|..+
T Consensus 565 hr~GRTGRqG~~G~s~ 580 (656)
T PRK12898 565 QLAGRCGRQGDPGSYE 580 (656)
T ss_pred HhcccccCCCCCeEEE
Confidence 9998888887777654
No 153
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.26 E-value=1.1e-06 Score=93.80 Aligned_cols=127 Identities=15% Similarity=0.024 Sum_probs=75.6
Q ss_pred Cchhh--hhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 168 GDKES--KNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 168 t~iQ~--~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
-||.. ..|...+. +...++ ++|+||||||. .+|.+..-... +.....++.-|-|--|..+...+.+
T Consensus 66 LPi~~~~~~Il~~l~-~~~vvi----i~g~TGSGKTT--qlPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~ 133 (1283)
T TIGR01967 66 LPVSAKREDIAEAIA-ENQVVI----IAGETGSGKTT--QLPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAE 133 (1283)
T ss_pred CCHHHHHHHHHHHHH-hCceEE----EeCCCCCCcHH--HHHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHH
Confidence 66655 33444441 555667 89999999998 56765432111 1112334445666666555544433
Q ss_pred HhcCCCcEEEEEECC-CCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhH-HHhhhcCCcHH
Q psy10677 246 FSRTMRIRHACLYGG-TSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWR-RLQDILGLTEE 310 (317)
Q Consensus 246 l~~~~~~~~~~~~gg-~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d-~l~~~~gf~~~ 310 (317)
- ++..+...+|. ...+.+...-..|.++|||+|++.+.. ..++..++||+| ++++ .+|.-.
T Consensus 134 e---lg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~-~D~LL~ 200 (1283)
T TIGR01967 134 E---LGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLN-IDFLLG 200 (1283)
T ss_pred H---hCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhcc-chhHHH
Confidence 2 23344444442 222223333334999999999998876 367889999999 5888 666544
No 154
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.11 E-value=3.8e-06 Score=85.55 Aligned_cols=120 Identities=13% Similarity=0.008 Sum_probs=78.7
Q ss_pred Cchhhhhccccccc--c------CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH
Q psy10677 168 GDKESKNWTIPLNF--Q------AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI 239 (317)
Q Consensus 168 t~iQ~~~ip~~l~~--~------g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi 239 (317)
...|..|+..+... . .+..+ +..+||||||++.+.-+...+ +. ...+++|||+|+++|..|.
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gl----i~~~TGsGKT~t~~~la~~l~-~~-----~~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGL----IWHTQGSGKTLTMLFAARKAL-EL-----LKNPKVFFVVDRRELDYQL 309 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeE----EEEecCCCccHHHHHHHHHHH-hh-----cCCCeEEEEECcHHHHHHH
Confidence 66788888776430 1 24677 899999999987655443322 21 2468999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEECCCCHHHHHHHc----cCcEEECcHHHHHHHhcC----CC----CCCCCchhHHHhh
Q psy10677 240 QAVISIFSRTMRIRHACLYGGTSKMYQVILL----RILTSATNTSLGIYLQQN----DA----HSPCLSVWRRLQD 303 (317)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~----~~ilv~TP~~l~~~l~~~----~~----~~~~lde~d~l~~ 303 (317)
.+.+..+.... . .+..+...-...+ ..|+|+|...+...+... .. .+..+|||++...
T Consensus 310 ~~~f~~~~~~~-~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~ 379 (667)
T TIGR00348 310 MKEFQSLQKDC-A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY 379 (667)
T ss_pred HHHHHhhCCCC-C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc
Confidence 99999986421 1 1112222222223 238999999998644321 11 1578899987543
No 155
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.10 E-value=3e-06 Score=90.51 Aligned_cols=114 Identities=12% Similarity=0.024 Sum_probs=72.7
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEE-----------------------EEccCCCch----hhh
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFV-----------------------EICHEYEKP----AKW 53 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~-----------------------~~~~~~~K~----~~L 53 (317)
+||||.++.+..++..++.+|..|...+.. . ..+++++ ++|+..+.. +.|
T Consensus 753 l~SATpiprtl~l~~~gl~d~~~I~~~p~~-r--~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L 829 (1147)
T PRK10689 753 TLTATPIPRTLNMAMSGMRDLSIIATPPAR-R--LAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 (1147)
T ss_pred EEcCCCCHHHHHHHHhhCCCcEEEecCCCC-C--CCceEEEEecCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHH
Confidence 589999888889999999999888765433 1 2244333 333221111 111
Q ss_pred hhhcc------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 54 WDSNN------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 54 ~~ll~------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
..++. +||+|+| +|++|+.+|||| +||+|+ .+++.++.....+-. -...++
T Consensus 830 ~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDI------P~v~~VIi~~ad~fg-----laq~~Q 898 (1147)
T PRK10689 830 AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI------PTANTIIIERADHFG-----LAQLHQ 898 (1147)
T ss_pred HHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccccc------ccCCEEEEecCCCCC-----HHHHHH
Confidence 11110 8999998 899999999999 999999 788887732211111 024666
Q ss_pred HHHHHCCceeecC
Q psy10677 116 SFRKEHNITLIGQ 128 (317)
Q Consensus 116 ~~~~~~~i~~~g~ 128 (317)
..++.++..-.|.
T Consensus 899 r~GRvGR~g~~g~ 911 (1147)
T PRK10689 899 LRGRVGRSHHQAY 911 (1147)
T ss_pred HhhccCCCCCceE
Confidence 6666666554443
No 156
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.09 E-value=4.1e-06 Score=84.86 Aligned_cols=113 Identities=19% Similarity=0.168 Sum_probs=86.5
Q ss_pred CCCchhhhhccccccccC----cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQA----KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g----~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
.+++-|..|...+. +. ...+ +.+-||||||-+|+=.+- ...++ |-++|||+|-..|-.|+.+
T Consensus 198 ~Ln~~Q~~a~~~i~--~~~~~~~~~L----l~GvTGSGKTEvYl~~i~-~~L~~-------GkqvLvLVPEI~Ltpq~~~ 263 (730)
T COG1198 198 ALNQEQQAAVEAIL--SSLGGFAPFL----LDGVTGSGKTEVYLEAIA-KVLAQ-------GKQVLVLVPEIALTPQLLA 263 (730)
T ss_pred ccCHHHHHHHHHHH--Hhccccccee----EeCCCCCcHHHHHHHHHH-HHHHc-------CCEEEEEeccccchHHHHH
Confidence 67899999999998 44 5566 789999999999965544 44442 5799999999999999988
Q ss_pred HHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECcHHHHHHHhcCCCCCCCCch
Q psy10677 242 VISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATNTSLGIYLQQNDAHSPCLSV 297 (317)
Q Consensus 242 ~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP~~l~~~l~~~~~~~~~lde 297 (317)
.++.... .+++.+.+|.+..+....+.+ |+|||=--| +.--.++.+.++||
T Consensus 264 rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl--F~Pf~~LGLIIvDE 321 (730)
T COG1198 264 RFKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL--FLPFKNLGLIIVDE 321 (730)
T ss_pred HHHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh--cCchhhccEEEEec
Confidence 8876644 688999999998887776655 799985433 23345677777774
No 157
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.00 E-value=1.9e-05 Score=80.53 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=98.7
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+-=.+. .|+ + +.-.||-|||++..+|+.-..+. |-.+-|++..--||..=.+++..+-
T Consensus 80 ydVQliGglvLh--~G~--I----AEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 80 YDVQIIGGIILD--LGS--V----AEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CchHHHHHHHHh--cCC--e----eeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHH
Confidence 899988776666 674 6 78899999999999999765443 5568888999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhc-----------CCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQ-----------NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~-----------~~~~~~~lde~d~l~ 302 (317)
..+|+++.++..+.+..+....... |+-||...+. |+|.. ..+++..+||+|.+|
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 9999999999999888877777766 9999999875 45554 367788999999865
No 158
>PRK14701 reverse gyrase; Provisional
Probab=97.98 E-value=4.7e-06 Score=91.50 Aligned_cols=92 Identities=17% Similarity=0.115 Sum_probs=69.8
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||++..-. ...++++|..+.++... ....+|.|.|+.++..+| ..|.++++
T Consensus 274 ~~SAT~~~r~~--~~~l~~~~l~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~g~~gIVF~~t~~~~e~ae~l 349 (1638)
T PRK14701 274 VASATGKAKGD--RVKLYRELLGFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKLGKGGLIFVPIDEGAEKAEEI 349 (1638)
T ss_pred EEecCCCchhH--HHHHhhcCeEEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhCCCCeEEEEeccccchHHHHH
Confidence 48999996411 12345788888998776 577889999988765544 45555553
Q ss_pred -------------CCCCccc---eeecCcccceec--------ccccCCcCCCCCCc-ccccCCCCCCC
Q psy10677 59 -------------GHYPKSV---RFVLGTAGFLLS--------AVSFSLPFRDDKTS-VVTVPSYPDPS 102 (317)
Q Consensus 59 -------------lhg~~~q---~F~~g~~~iLva--------arg~~~~lr~~~~d-~~~v~nf~~p~ 102 (317)
+||+..+ +|++|+++|||| |||+|+ .+ +..+++|++|.
T Consensus 350 a~~L~~~Gi~a~~~h~~R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDi------P~~Vryvi~~~~Pk 412 (1638)
T PRK14701 350 EKYLLEDGFKIELVSAKNKKGFDLFEEGEIDYLIGVATYYGTLVRGLDL------PERIRFAVFYGVPK 412 (1638)
T ss_pred HHHHHHCCCeEEEecchHHHHHHHHHcCCCCEEEEecCCCCeeEecCcc------CCccCEEEEeCCCC
Confidence 8888666 999999999999 499999 66 67788888886
No 159
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.92 E-value=1.2e-05 Score=78.79 Aligned_cols=113 Identities=14% Similarity=0.099 Sum_probs=75.8
Q ss_pred CcccCCChHHHHHHHHhc--CCCEEEEEcCCCCCCCcCcEE-------------------------EEEEccCCCchhhh
Q psy10677 1 MWSATWPREIQKLAKEFL--SDPIQLNVGSANLAANPNIKQ-------------------------FVEICHEYEKPAKW 53 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l--~~p~~i~v~~~~~~~~~~i~q-------------------------~~~~~~~~~K~~~L 53 (317)
+||||.++.+++.....+ .+|..+...-. ..++.. -.++|...+..+.+
T Consensus 167 ~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~----r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~l 242 (470)
T TIGR00614 167 ALTATASPSVREDILRQLNLKNPQIFCTSFD----RPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQV 242 (470)
T ss_pred EEecCCCHHHHHHHHHHcCCCCCcEEeCCCC----CCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHH
Confidence 479999999877665554 45644332211 112211 13344443333334
Q ss_pred hhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 54 WDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 54 ~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
...|+ +||+|++ +|++|+.+|||| ++|+|+ .++..|++|++|... +++
T Consensus 243 a~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~------p~V~~VI~~~~P~s~------~~y 310 (470)
T TIGR00614 243 TASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINK------PDVRFVIHYSLPKSM------ESY 310 (470)
T ss_pred HHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCc------ccceEEEEeCCCCCH------HHH
Confidence 43332 9999998 899999999999 999999 899999999998754 678
Q ss_pred HHHHHHHCCceeecCC
Q psy10677 114 IDSFRKEHNITLIGQN 129 (317)
Q Consensus 114 i~~~~~~~~i~~~g~~ 129 (317)
+++.++..+.+..|..
T Consensus 311 ~Qr~GRaGR~G~~~~~ 326 (470)
T TIGR00614 311 YQESGRAGRDGLPSEC 326 (470)
T ss_pred HhhhcCcCCCCCCceE
Confidence 8888777775544443
No 160
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.92 E-value=2.5e-05 Score=79.96 Aligned_cols=82 Identities=9% Similarity=0.092 Sum_probs=58.8
Q ss_pred Cchhhhhcccccc--cc-----CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN--FQ-----AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~-----g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.+-|.+..-.+.+ .+ ++.++ +.||||+|||+||++|.+...... +-++||=+.|..|-.|+.
T Consensus 27 R~~Q~~M~~~V~~al~~~~~~~~~~lv----iEAgTGtGKTlaYLlPai~~A~~~-------~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 27 RAGQRQMIAEVAKTLAGEYLKDGRILV----IEAGTGVGKTLSYLLAGIPIARAE-------KKKLVISTATVALQEQLV 95 (697)
T ss_pred CHHHHHHHHHHHHHHhcccccccceEE----EECCCCcchhHHHHHHHHHHHHHc-------CCeEEEEcCCHHHHHHHH
Confidence 7888885544432 02 46688 999999999999999998776643 457999999999999995
Q ss_pred H-HHHHHhcCC--CcEEEEEECC
Q psy10677 241 A-VISIFSRTM--RIRHACLYGG 260 (317)
Q Consensus 241 ~-~~~~l~~~~--~~~~~~~~gg 260 (317)
. .+-.+.+.+ .++++++-|-
T Consensus 96 ~kDlP~l~~~l~~~~~~~llKGr 118 (697)
T PRK11747 96 SKDLPLLLKISGLDFKFTLAKGR 118 (697)
T ss_pred hhhhhHHHHHcCCCceEEEEcCc
Confidence 3 333333332 5777766554
No 161
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.91 E-value=1.1e-05 Score=84.74 Aligned_cols=59 Identities=7% Similarity=-0.066 Sum_probs=51.1
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLI 126 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~ 126 (317)
+||+|++ +|++|+++|||| ++|+|+ .++..|++|++|..- +.++++.+|.++.+..
T Consensus 710 YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDk------PDVR~VIHydlPkSi------EsYyQriGRAGRDG~~ 777 (1195)
T PLN03137 710 YHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINK------PDVRFVIHHSLPKSI------EGYHQECGRAGRDGQR 777 (1195)
T ss_pred eeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCc------cCCcEEEEcCCCCCH------HHHHhhhcccCCCCCC
Confidence 9999998 999999999999 999999 899999999999754 7888888888776555
Q ss_pred cCC
Q psy10677 127 GQN 129 (317)
Q Consensus 127 g~~ 129 (317)
|..
T Consensus 778 g~c 780 (1195)
T PLN03137 778 SSC 780 (1195)
T ss_pred ceE
Confidence 543
No 162
>KOG0347|consensus
Probab=97.88 E-value=6.2e-07 Score=86.07 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=78.6
Q ss_pred HHHHHHHh-c-CCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc-----------------------------
Q psy10677 10 IQKLAKEF-L-SDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN----------------------------- 58 (317)
Q Consensus 10 v~~l~~~~-l-~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~----------------------------- 58 (317)
++.|.++. + .+|..|.+.+.. ++...+....+.|+..+|--.|..+|.
T Consensus 411 iq~Lmk~ig~~~kpkiiD~t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~ 489 (731)
T KOG0347|consen 411 IQHLMKKIGFRGKPKIIDLTPQS-ATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIP 489 (731)
T ss_pred HHHHHHHhCccCCCeeEecCcch-hHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCC
Confidence 44444332 3 367888887766 455555555555655555555554443
Q ss_pred ---CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 59 ---GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 59 ---lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
||..|.| +|++....|||| |||+|| ..+.+|++|..|... +-|||+=+++.++
T Consensus 490 p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDI------p~V~HVIHYqVPrts------eiYVHRSGRTARA 557 (731)
T KOG0347|consen 490 PLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDI------PGVQHVIHYQVPRTS------EIYVHRSGRTARA 557 (731)
T ss_pred CchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCC------CCcceEEEeecCCcc------ceeEecccccccc
Confidence 9999999 999999999999 999999 899999999999865 6688888888877
Q ss_pred eeecCC
Q psy10677 124 TLIGQN 129 (317)
Q Consensus 124 ~~~g~~ 129 (317)
.-+|..
T Consensus 558 ~~~Gvs 563 (731)
T KOG0347|consen 558 NSEGVS 563 (731)
T ss_pred cCCCeE
Confidence 777743
No 163
>KOG0349|consensus
Probab=97.87 E-value=4.5e-06 Score=78.23 Aligned_cols=117 Identities=14% Similarity=0.147 Sum_probs=91.6
Q ss_pred CcccCCC-hHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEcc-CC-Cchhhhhhhcc-------------------
Q psy10677 1 MWSATWP-REIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICH-EY-EKPAKWWDSNN------------------- 58 (317)
Q Consensus 1 lFSAT~~-~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~-~~-~K~~~L~~ll~------------------- 58 (317)
+.|||+. -+|.+++.+.|+-|.-|.+..++ ..++.++|.+..+. .- .-..-|+..+.
T Consensus 405 vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~ 483 (725)
T KOG0349|consen 405 VCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPEN 483 (725)
T ss_pred eeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCC
Confidence 3688876 57999999999999999998888 67888888875543 22 22333333332
Q ss_pred ------------------------------------------------------CCCCccc--------eeecCccccee
Q psy10677 59 ------------------------------------------------------GHYPKSV--------RFVLGTAGFLL 76 (317)
Q Consensus 59 ------------------------------------------------------lhg~~~q--------~F~~g~~~iLv 76 (317)
+|||..+ .|++++++.||
T Consensus 484 ~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkfli 563 (725)
T KOG0349|consen 484 PSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLI 563 (725)
T ss_pred hhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEE
Confidence 9999844 99999999999
Q ss_pred c----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCC
Q psy10677 77 S----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNI 130 (317)
Q Consensus 77 a----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~ 130 (317)
| |||+|| .....++|..+|.+. ..++|++.+-.++...|-++
T Consensus 564 ctdvaargldi------~g~p~~invtlpd~k------~nyvhrigrvgraermglai 609 (725)
T KOG0349|consen 564 CTDVAARGLDI------TGLPFMINVTLPDDK------TNYVHRIGRVGRAERMGLAI 609 (725)
T ss_pred Eehhhhccccc------cCCceEEEEecCccc------chhhhhhhccchhhhcceeE
Confidence 9 999999 888888888999876 78999998888777666543
No 164
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=97.84 E-value=2.5e-05 Score=78.94 Aligned_cols=58 Identities=10% Similarity=0.024 Sum_probs=49.9
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLI 126 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~ 126 (317)
+||+|++ .|++|+.+|||| ++|+|+ .++..|++|++|... ++++++.++.++.+..
T Consensus 266 ~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDi------p~V~~VI~~d~P~s~------~~y~Qr~GRaGR~G~~ 333 (607)
T PRK11057 266 YHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINK------PNVRFVVHFDIPRNI------ESYYQETGRAGRDGLP 333 (607)
T ss_pred ecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCC------CCcCEEEEeCCCCCH------HHHHHHhhhccCCCCC
Confidence 9999997 999999999999 999999 899999999998754 7888888888776544
Q ss_pred cC
Q psy10677 127 GQ 128 (317)
Q Consensus 127 g~ 128 (317)
|.
T Consensus 334 ~~ 335 (607)
T PRK11057 334 AE 335 (607)
T ss_pred ce
Confidence 43
No 165
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=97.84 E-value=1.5e-05 Score=83.54 Aligned_cols=113 Identities=11% Similarity=0.013 Sum_probs=70.9
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEE-----------------------EEEEccCCCchhhhhhhc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQ-----------------------FVEICHEYEKPAKWWDSN 57 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q-----------------------~~~~~~~~~K~~~L~~ll 57 (317)
+||||.++....++...+.++..|...+.+ . ..|++ .+++|+..+..+.+...|
T Consensus 604 ~~SATpiprtl~~~l~g~~d~s~I~~~p~~-R--~~V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L 680 (926)
T TIGR00580 604 TLSATPIPRTLHMSMSGIRDLSIIATPPED-R--LPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQL 680 (926)
T ss_pred EEecCCCHHHHHHHHhcCCCcEEEecCCCC-c--cceEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHH
Confidence 589998777777877777888776654332 1 12333 333333322222221111
Q ss_pred c----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 58 N----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 58 ~----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+ +||+|++ +|++|+.+|||| +||+|+ .++..+++++.+... . ....+
T Consensus 681 ~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDI------p~v~~VIi~~a~~~g-l----s~l~Q 749 (926)
T TIGR00580 681 RELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDI------PNANTIIIERADKFG-L----AQLYQ 749 (926)
T ss_pred HHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccc------ccCCEEEEecCCCCC-H----HHHHH
Confidence 1 9999998 999999999999 999999 888888887776532 1 23445
Q ss_pred HHHHHCCceeec
Q psy10677 116 SFRKEHNITLIG 127 (317)
Q Consensus 116 ~~~~~~~i~~~g 127 (317)
..++.++..-.|
T Consensus 750 r~GRvGR~g~~g 761 (926)
T TIGR00580 750 LRGRVGRSKKKA 761 (926)
T ss_pred HhcCCCCCCCCe
Confidence 444444443333
No 166
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.83 E-value=1.3e-05 Score=75.57 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=39.6
Q ss_pred CCCCccc------------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCC
Q psy10677 59 GHYPKSV------------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHN 122 (317)
Q Consensus 59 lhg~~~q------------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~ 122 (317)
+||++++ .|++|+.++||| +||+|+ +...++++..|. ++.+++.++.++
T Consensus 254 ~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi-------~~~~vi~~~~~~--------~~~iqr~GR~gR 318 (358)
T TIGR01587 254 LHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDI-------SADVMITELAPI--------DSLIQRLGRLHR 318 (358)
T ss_pred EECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceecc-------CCCEEEEcCCCH--------HHHHHHhccccC
Confidence 8999976 699999999999 999998 244555555442 477888888777
Q ss_pred cee
Q psy10677 123 ITL 125 (317)
Q Consensus 123 i~~ 125 (317)
.+-
T Consensus 319 ~g~ 321 (358)
T TIGR01587 319 YGR 321 (358)
T ss_pred CCC
Confidence 644
No 167
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.81 E-value=5.4e-05 Score=69.30 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=88.5
Q ss_pred CCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.+|+-|..+-..++. .+.+|.+ +.|-||+|||-- +.+.++....+ |.++.|.+|--..|..++..+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~l----v~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rl 164 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTL----VWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRL 164 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEE----EEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHH
Confidence 568899876544431 2778999 999999999953 45667776654 778999999999898888888
Q ss_pred HHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcCCCCCCCCchhHH
Q psy10677 244 SIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQNDAHSPCLSVWRR 300 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~~~~~~~lde~d~ 300 (317)
+.--. ++.+.++||+.+..-+ ..++|+|-..|+.+-+ .+++..+||.|.
T Consensus 165 k~aF~--~~~I~~Lyg~S~~~fr----~plvVaTtHQLlrFk~--aFD~liIDEVDA 213 (441)
T COG4098 165 KQAFS--NCDIDLLYGDSDSYFR----APLVVATTHQLLRFKQ--AFDLLIIDEVDA 213 (441)
T ss_pred HHhhc--cCCeeeEecCCchhcc----ccEEEEehHHHHHHHh--hccEEEEecccc
Confidence 76555 5788999999887544 2489999988888755 788889998763
No 168
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.78 E-value=3.9e-05 Score=79.56 Aligned_cols=113 Identities=12% Similarity=-0.005 Sum_probs=75.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCch-----hhhhhhcc-----------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKP-----AKWWDSNN----------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~-----~~L~~ll~----------------- 58 (317)
+||||++.+. + ..|+.++..|.+.... ..|+++|..++..+++ ..+..+++
T Consensus 151 lmSATl~~~~--l-~~~l~~~~vI~~~gr~----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~ 223 (819)
T TIGR01970 151 AMSATLDGER--L-SSLLPDAPVVESEGRS----FPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIR 223 (819)
T ss_pred EEeCCCCHHH--H-HHHcCCCcEEEecCcc----eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 5899999764 3 5678776666654322 2467777666544432 22222221
Q ss_pred ------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCC
Q psy10677 59 ------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQG 108 (317)
Q Consensus 59 ------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~ 108 (317)
+||+|++ .|++|+.+|+|| +||+|| .++..|+++.++.......
T Consensus 224 ~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItI------p~V~~VID~Gl~r~~~yd~ 297 (819)
T TIGR01970 224 RVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTI------EGIRVVIDSGLARVARFDP 297 (819)
T ss_pred HHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccc------cCceEEEEcCccccccccc
Confidence 8999997 899999999999 999999 8999999998775331111
Q ss_pred -----------CC-HHHHHHHHHHCCceeec
Q psy10677 109 -----------KT-KEEIDSFRKEHNITLIG 127 (317)
Q Consensus 109 -----------~~-~~~i~~~~~~~~i~~~g 127 (317)
.+ .+.+++-++.++. ..|
T Consensus 298 ~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G 327 (819)
T TIGR01970 298 KTGITRLETVRISQASATQRAGRAGRL-EPG 327 (819)
T ss_pred ccCCceeeEEEECHHHHHhhhhhcCCC-CCC
Confidence 11 3466777777665 344
No 169
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.76 E-value=4e-05 Score=78.18 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=55.6
Q ss_pred Cchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+.|.+++-.+.. ..|+.++ +.||||+|||++|++|++...... +..++|.++|+.|-.|+.+....
T Consensus 17 r~~Q~~~~~~v~~a~~~~~~~~----iEapTGtGKTl~yL~~al~~~~~~-------~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 17 RPEQREMAEAVAEALKGGEGLL----IEAPTGTGKTLAYLLPALAYAREE-------GKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CHHHHHHHHHHHHHHcCCCcEE----EECCCCccHHHHHHHHHHHHHHHc-------CCcEEEECCCHHHHHHHHHhhcc
Confidence 9999887743321 1566689 999999999999999999887653 47899999999999999888776
Q ss_pred H
Q psy10677 246 F 246 (317)
Q Consensus 246 l 246 (317)
+
T Consensus 86 ~ 86 (654)
T COG1199 86 I 86 (654)
T ss_pred h
Confidence 5
No 170
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.69 E-value=6.4e-05 Score=77.82 Aligned_cols=119 Identities=15% Similarity=0.087 Sum_probs=96.1
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|...-=.+. +|+ + +.-.||-||||+..+|+.-..+. |-.+-|++..--||..=.+++..+-
T Consensus 140 ydVQLiGgivLh--~G~--I----AEM~TGEGKTLvatlp~yLnAL~--------G~gVHvVTvNDYLA~RDaewm~p~y 203 (1025)
T PRK12900 140 YDVQLIGGIVLH--SGK--I----SEMATGEGKTLVSTLPTFLNALT--------GRGVHVVTVNDYLAQRDKEWMNPVF 203 (1025)
T ss_pred cchHHhhhHHhh--cCC--c----cccCCCCCcchHhHHHHHHHHHc--------CCCcEEEeechHhhhhhHHHHHHHH
Confidence 788876655555 665 5 67899999999999999766654 4467788888999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhc-----------CCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQ-----------NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~-----------~~~~~~~lde~d~l~ 302 (317)
..+|+++.|+..+.+..+....... |+-||+..+. |+|.. ..++|..+||+|.+|
T Consensus 204 ~flGLtVg~i~~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 204 EFHGLSVGVILNTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred HHhCCeeeeeCCCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 9999999999988888887777766 9999998774 44443 367788999999865
No 171
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.68 E-value=7.4e-05 Score=68.06 Aligned_cols=112 Identities=15% Similarity=0.039 Sum_probs=68.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
..+..+ ++-+.|+|||+..+.-+. .+....+. ...-.+||+||+ .+..|-.+++.++.....+++....|+.
T Consensus 24 ~~~g~l----L~de~GlGKT~~~i~~~~-~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~ 95 (299)
T PF00176_consen 24 PPRGGL----LADEMGLGKTITAIALIS-YLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDS 95 (299)
T ss_dssp TT-EEE----E---TTSSHHHHHHHHHH-HHHHCCTT--SS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSC
T ss_pred CCCCEE----EEECCCCCchhhhhhhhh-hhhhcccc--ccccceeEeecc-chhhhhhhhhcccccccccccccccccc
Confidence 455677 888999999987655443 44432210 111249999999 7778999999999865456666665544
Q ss_pred CHHHHH-HHcc--CcEEECcHHHH--------HHHhcCCCCCCCCchhHHH
Q psy10677 262 SKMYQV-ILLR--ILTSATNTSLG--------IYLQQNDAHSPCLSVWRRL 301 (317)
Q Consensus 262 ~~~~~~-~~~~--~ilv~TP~~l~--------~~l~~~~~~~~~lde~d~l 301 (317)
...... .... .++|+|...+. +.+..-..++.++||+..+
T Consensus 96 ~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 96 ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRL 146 (299)
T ss_dssp HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGG
T ss_pred ccccccccccccceeeeccccccccccccccccccccccceeEEEeccccc
Confidence 111111 1111 17999998888 5666666888999999887
No 172
>KOG0947|consensus
Probab=97.65 E-value=4.9e-05 Score=77.46 Aligned_cols=114 Identities=9% Similarity=-0.048 Sum_probs=90.2
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
++-..|++||=++. .|..|+ +.|+|.+|||+..-.++...- ..+-++++-+|-++|..|-++.++.
T Consensus 297 elD~FQk~Ai~~le--rg~SVF----VAAHTSAGKTvVAEYAialaq--------~h~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLE--RGDSVF----VAAHTSAGKTVVAEYAIALAQ--------KHMTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred CccHHHHHHHHHHH--cCCeEE----EEecCCCCcchHHHHHHHHHH--------hhccceEecchhhhhccchHHHHHH
Confidence 45889999999999 999999 999999999998665554321 1367999999999999999999887
Q ss_pred HhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CCCCCCCchhHHH
Q psy10677 246 FSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DAHSPCLSVWRRL 301 (317)
Q Consensus 246 l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l 301 (317)
--...| .++|+....... ..+|-|-.-|-.||-+| ++.+.+.||.+=+
T Consensus 363 tF~Dvg----LlTGDvqinPeA----sCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYi 415 (1248)
T KOG0947|consen 363 TFGDVG----LLTGDVQINPEA----SCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYI 415 (1248)
T ss_pred hccccc----eeecceeeCCCc----ceEeehHHHHHHHHhcccchhhccceEEEeeeeec
Confidence 665434 788887665443 37899999998888886 6777888876543
No 173
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.63 E-value=0.00014 Score=74.74 Aligned_cols=74 Identities=8% Similarity=-0.036 Sum_probs=60.1
Q ss_pred CCCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 165 KKCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 165 ~~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
..+.|.|.+.+..+.. ..|.+.+ +.||||+|||+|.+.|.|......+ ..++.++.+.|..=..|+.++
T Consensus 9 ~~~y~~Q~~~m~~v~~~l~~~~~~l----lEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~E 79 (705)
T TIGR00604 9 EKIYPEQRSYMRDLKRSLDRGDEAI----LEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEE 79 (705)
T ss_pred CCCCHHHHHHHHHHHHHhccCCceE----EeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHH
Confidence 3348999887755432 2788999 9999999999999999999876532 347999999999989999999
Q ss_pred HHHHh
Q psy10677 243 ISIFS 247 (317)
Q Consensus 243 ~~~l~ 247 (317)
++++.
T Consensus 80 lk~~~ 84 (705)
T TIGR00604 80 LRKLM 84 (705)
T ss_pred HHhhh
Confidence 99864
No 174
>KOG0952|consensus
Probab=97.58 E-value=5.3e-05 Score=77.88 Aligned_cols=122 Identities=11% Similarity=0.033 Sum_probs=94.3
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+.|+|.+.+-++.. -..+++ +.+|||||||++|.+.+..-+... ++-++++++|-+.|+..-.+..++
T Consensus 927 ~fn~~q~~if~~~y~-td~~~~----~g~ptgsgkt~~ae~a~~~~~~~~------p~~kvvyIap~kalvker~~Dw~~ 995 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYH-TDLNFL----LGAPTGSGKTVVAELAIFRALSYY------PGSKVVYIAPDKALVKERSDDWSK 995 (1230)
T ss_pred ccCCccceEEEEEee-cchhhh----hcCCccCcchhHHHHHHHHHhccC------CCccEEEEcCCchhhcccccchhh
Confidence 458899999988774 566778 899999999999999998776653 457999999999999888887777
Q ss_pred HhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc-------CCCCCCCCchh
Q psy10677 246 FSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ-------NDAHSPCLSVW 298 (317)
Q Consensus 246 l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~-------~~~~~~~lde~ 298 (317)
....-|++++-++|+...+.....=..++|+||.+.-.+... ..+++.++||.
T Consensus 996 r~~~~g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~ 1055 (1230)
T KOG0952|consen 996 RDELPGIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEI 1055 (1230)
T ss_pred hcccCCceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeeccc
Confidence 666559999999999888744433344999999987765542 14555555543
No 175
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.57 E-value=6.9e-05 Score=77.79 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=64.1
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchh-----hhhhhcc-----------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPA-----KWWDSNN----------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~-----~L~~ll~----------------- 58 (317)
+||||++.+ .+ ..|+.++..|.+.... ..|+++|..++..+|.. .+..+++
T Consensus 154 lmSATl~~~--~l-~~~~~~~~~I~~~gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 154 IMSATLDND--RL-QQLLPDAPVIVSEGRS----FPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQ 226 (812)
T ss_pred EEecCCCHH--HH-HHhcCCCCEEEecCcc----ccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHH
Confidence 589999976 34 4677776666554222 24777777666555543 2333322
Q ss_pred ------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCC
Q psy10677 59 ------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPS 102 (317)
Q Consensus 59 ------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~ 102 (317)
+||+|++ .|++|+.+|+|| +||+|| .++..|+++.++.
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtI------p~V~~VID~Gl~r 294 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTI------EGIRLVVDSGLER 294 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccc------cCceEEEECCCcc
Confidence 8999997 799999999999 999999 8999999887654
No 176
>PF13245 AAA_19: Part of AAA domain
Probab=97.54 E-value=0.00029 Score=51.21 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=35.2
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
+.||.|||||...+--+...+.... .. +-++++++||+..+..+.+.+
T Consensus 15 v~g~pGtGKT~~~~~~i~~l~~~~~---~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 15 VQGPPGTGKTTTLAARIAELLAARA---DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhc---CC-CCeEEEECCCHHHHHHHHHHH
Confidence 5999999999665544444442211 12 568999999999999998877
No 177
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=97.52 E-value=8.3e-05 Score=74.95 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=45.7
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..|++|++|..- ++++++.++.++.+
T Consensus 254 ~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~------p~v~~VI~~~~p~s~------~~y~Q~~GRaGR~G 319 (591)
T TIGR01389 254 YHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDK------PNVRFVIHYDMPGNL------ESYYQEAGRAGRDG 319 (591)
T ss_pred EECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcC------CCCCEEEEcCCCCCH------HHHhhhhccccCCC
Confidence 8999997 899999999999 999999 889999999998754 57777777766643
No 178
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.49 E-value=0.00019 Score=74.62 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=93.0
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|...-=.+. .|+ + +.-.||-||||+..+|+.-..+. |-.+-|++..--||..=.+++..+-
T Consensus 171 yDVQliGgivLh--~G~--I----AEM~TGEGKTLvAtlp~yLnAL~--------GkgVHvVTVNDYLA~RDaewmgply 234 (1112)
T PRK12901 171 YDVQLIGGVVLH--QGK--I----AEMATGEGKTLVATLPVYLNALT--------GNGVHVVTVNDYLAKRDSEWMGPLY 234 (1112)
T ss_pred cchHHhhhhhhc--CCc--e----eeecCCCCchhHHHHHHHHHHHc--------CCCcEEEEechhhhhccHHHHHHHH
Confidence 677776554555 555 6 67899999999999999876664 4457788889999999999999999
Q ss_pred cCCCcEEEEEEC-CCCHHHHHHHccC-cEEECcHHHH-HHHhc-----------CCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYG-GTSKMYQVILLRI-LTSATNTSLG-IYLQQ-----------NDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~g-g~~~~~~~~~~~~-ilv~TP~~l~-~~l~~-----------~~~~~~~lde~d~l~ 302 (317)
..+|+++.|+.. +.+..+...+... |.-||...+. |+|.. ..++|..+||+|.+|
T Consensus 235 ~fLGLsvg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 235 EFHGLSVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred HHhCCceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 999999999876 5566666666655 9999998774 44443 367888999999865
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.39 E-value=0.00025 Score=61.82 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=49.9
Q ss_pred CCCchhhhhccccccccCcC-cccccceeccCCChhHHHHHHHHHHHHHcCC-CCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKK-FISVLQKKAEVQSRSVFTYILPALYHILKMP-KLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~d-vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~-~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
|+++-|.+|+-.++ +... .+ +.||+|||||..- ..++..+.... ......+...|+++||..-+..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~--~~~~~~~----i~GpPGTGKT~~l-~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l 73 (236)
T PF13086_consen 1 KLNESQREAIQSAL--SSNGITL----IQGPPGTGKTTTL-ASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERL 73 (236)
T ss_dssp ---HHHHHHHHHHC--TSSE-EE----EE-STTSSHHHHH-HHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCCEE----EECCCCCChHHHH-HHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHH
Confidence 46889999999999 8877 78 8999999999433 34444442100 011235789999999999999998888
Q ss_pred HH
Q psy10677 244 SI 245 (317)
Q Consensus 244 ~~ 245 (317)
.+
T Consensus 74 ~~ 75 (236)
T PF13086_consen 74 KK 75 (236)
T ss_dssp HC
T ss_pred Hh
Confidence 87
No 180
>KOG0948|consensus
Probab=97.31 E-value=0.00026 Score=70.74 Aligned_cols=116 Identities=9% Similarity=-0.004 Sum_probs=91.4
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+-|.|+.||-++= .+..|+ +.|.|.+|||.+.-.+|...+.. .-++++-+|-++|..|-|+.+..
T Consensus 129 ~LDpFQ~~aI~Cid--r~eSVL----VSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~ 194 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCID--RGESVL----VSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLE 194 (1041)
T ss_pred ccCchHhhhhhhhc--CCceEE----EEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHH
Confidence 45899999999999 999999 99999999999988888776653 35899999999999999998876
Q ss_pred HhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhh
Q psy10677 246 FSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQD 303 (317)
Q Consensus 246 l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~ 303 (317)
=.+. +.+.+|+........ -+|-|-.-|-.++-+| .+...+.||.+=|-|
T Consensus 195 EF~D----VGLMTGDVTInP~AS----CLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRD 249 (1041)
T KOG0948|consen 195 EFKD----VGLMTGDVTINPDAS----CLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRD 249 (1041)
T ss_pred Hhcc----cceeecceeeCCCCc----eeeeHHHHHHHHHhccchHhheeeeEEeeeehhccc
Confidence 5553 455677776643332 4788888888888886 456667777766655
No 181
>KOG0949|consensus
Probab=97.09 E-value=0.00065 Score=69.76 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=88.5
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
++...|.+.+-.+= .++..+ ++|||.+|||.+--.. ++...+. .+.--+|+++||+.|+.|+...+..
T Consensus 511 ~Pd~WQ~elLDsvD--r~eSav----IVAPTSaGKTfisfY~-iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~Vya 578 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVD--RNESAV----IVAPTSAGKTFISFYA-IEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYA 578 (1330)
T ss_pred CCcHHHHHHhhhhh--cccceE----EEeeccCCceeccHHH-HHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHH
Confidence 44778888777766 889999 9999999999864333 3444443 2455789999999999999988887
Q ss_pred HhcC-CCcEEEEEECCCCHHHHHHHccC-cEEECcHHHHHHHhc--------CCCCCCCCchhH
Q psy10677 246 FSRT-MRIRHACLYGGTSKMYQVILLRI-LTSATNTSLGIYLQQ--------NDAHSPCLSVWR 299 (317)
Q Consensus 246 l~~~-~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~~~l~~--------~~~~~~~lde~d 299 (317)
.-.. .-.+...+.|....+-+...+.. |+|+-|..+..+|.. ..+++.+.||..
T Consensus 579 RF~~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH 642 (1330)
T KOG0949|consen 579 RFDTKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVH 642 (1330)
T ss_pred hhccCccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhh
Confidence 6532 33444566677777666664444 999999999988776 256667777654
No 182
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.09 E-value=0.00054 Score=61.21 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=55.5
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECC-CCHHHHHHHccC----cEEECcHHHHHHHhcCCCCCC
Q psy10677 221 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG-TSKMYQVILLRI----LTSATNTSLGIYLQQNDAHSP 293 (317)
Q Consensus 221 ~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg-~~~~~~~~~~~~----ilv~TP~~l~~~l~~~~~~~~ 293 (317)
...|.+||||.+-.-|..+.+.++.|... +.+++-++.- ....+|...++. |.|||||||..+++.+.+.+.
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~ 200 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLS 200 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcc
Confidence 45799999999988888888888877421 3455555544 477888888875 899999999999999876653
No 183
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.08 E-value=0.0014 Score=67.82 Aligned_cols=78 Identities=9% Similarity=0.023 Sum_probs=61.1
Q ss_pred CchhhhhccccccccC-c-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQA-K-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g-~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+.|..++-.+....+ . .++ +.||||+|||.+.+.+.+..+... ....++.+.+.|+|.+..++++.++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~v----l~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~ 268 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVV----LEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKE 268 (733)
T ss_pred hHHHHHHHHHHHhcccccccEE----EEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHh
Confidence 7778888766653122 2 566 899999999999999999887652 12578999999999999999999998
Q ss_pred HhcCCCcE
Q psy10677 246 FSRTMRIR 253 (317)
Q Consensus 246 l~~~~~~~ 253 (317)
.....++.
T Consensus 269 ~~~~~~~~ 276 (733)
T COG1203 269 IFGLFSVI 276 (733)
T ss_pred hhcccccc
Confidence 87765443
No 184
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.06 E-value=0.00085 Score=54.61 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=57.8
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~ 271 (317)
+--.+|+|||--.+--++....+. +.+.|||.|||.+|..+++.++. .++++..-.-+. ...-+
T Consensus 9 ~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~~~-----~~~g~ 72 (148)
T PF07652_consen 9 LDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNARMR-----THFGS 72 (148)
T ss_dssp EE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTT----SSEEEESTTSS---------SS
T ss_pred EecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhc----CCcccCceeeec-----cccCC
Confidence 678899999998877777766543 67999999999999887776643 344433211111 11112
Q ss_pred C-cEEECcHHHHHHHhcC----CCCCCCCchhHH
Q psy10677 272 I-LTSATNTSLGIYLQQN----DAHSPCLSVWRR 300 (317)
Q Consensus 272 ~-ilv~TP~~l~~~l~~~----~~~~~~lde~d~ 300 (317)
. |-|.|-+.+..++.++ ..++..+||+.-
T Consensus 73 ~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~ 106 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHF 106 (148)
T ss_dssp SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT-
T ss_pred CcccccccHHHHHHhcCcccccCccEEEEecccc
Confidence 2 6788888888776653 566777888753
No 185
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.03 E-value=0.00076 Score=69.14 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=35.0
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPS 102 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~ 102 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..+++++.|.
T Consensus 511 lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDi------p~v~~VIi~~~~r 560 (681)
T PRK10917 511 LHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDV------PNATVMVIENAER 560 (681)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCccc------CCCcEEEEeCCCC
Confidence 9999998 999999999999 999999 8888888888775
No 186
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=96.96 E-value=0.001 Score=62.88 Aligned_cols=25 Identities=16% Similarity=-0.089 Sum_probs=22.2
Q ss_pred CCCCccc--eeecCcccceec----ccccCC
Q psy10677 59 GHYPKSV--RFVLGTAGFLLS----AVSFSL 83 (317)
Q Consensus 59 lhg~~~q--~F~~g~~~iLva----arg~~~ 83 (317)
+||.++| +.+.++.++||| +||+|+
T Consensus 304 l~g~~~~~~R~~~~~~~iLVaTdv~~rGiDi 334 (357)
T TIGR03158 304 ITGFAPKKDRERAMQFDILLGTSTVDVGVDF 334 (357)
T ss_pred eecCCCHHHHHHhccCCEEEEecHHhcccCC
Confidence 7999998 667778899999 999999
No 187
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=96.94 E-value=0.0036 Score=66.02 Aligned_cols=121 Identities=12% Similarity=-0.049 Sum_probs=77.7
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|+|..++-.++......++ +.-+.|-|||+-..+-+-..+.. +..-++||+||+ .|+.|-..++.+..
T Consensus 154 ~pHQl~~~~~vl~~~~~R~L----LADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF 222 (956)
T PRK04914 154 IPHQLYIAHEVGRRHAPRVL----LADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRF 222 (956)
T ss_pred CHHHHHHHHHHhhccCCCEE----EEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHh
Confidence 99999988776632334677 78899999999876655444433 223479999998 78888877775432
Q ss_pred cCCCcEEEEEECCCCHHHH---HHHc--cCcEEECcHHHH------HHHhcCCCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQ---VILL--RILTSATNTSLG------IYLQQNDAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~---~~~~--~~ilv~TP~~l~------~~l~~~~~~~~~lde~d~l~ 302 (317)
++....+.++...... ...+ ..++|++-+.+. +.+.....++.++|||+.+-
T Consensus 223 ---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk 285 (956)
T PRK04914 223 ---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLV 285 (956)
T ss_pred ---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhc
Confidence 3444444332211100 0111 237888877554 23455678999999999985
No 188
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=96.93 E-value=0.0025 Score=67.54 Aligned_cols=126 Identities=13% Similarity=0.027 Sum_probs=82.4
Q ss_pred CCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.+.+.|.+++.-++. ..|.+.+ ++-..|.|||+-- +.++.++.... +.....|||||. .+..|-.+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGI----LADEMGLGKTlQa-IalL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei 238 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGI----LADEMGLGKTLQT-ISLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEI 238 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEE----EEeCCCccHHHHH-HHHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHH
Confidence 348889988866541 2577788 8889999999864 33444444321 122357999996 5567788888
Q ss_pred HHHhcCCCcEEEEEECCCCHHHHHH--Hc----cCcEEECcHHHHH---HHhcCCCCCCCCchhHHHhh
Q psy10677 244 SIFSRTMRIRHACLYGGTSKMYQVI--LL----RILTSATNTSLGI---YLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~~~~~~--~~----~~ilv~TP~~l~~---~l~~~~~~~~~lde~d~l~~ 303 (317)
.+++. .+++..++|......... .+ -.|+|+|...+.. .+..-...+.++|||+++=.
T Consensus 239 ~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN 305 (1033)
T PLN03142 239 RRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKN 305 (1033)
T ss_pred HHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCC
Confidence 88875 467777776544332211 11 1278898887753 44555677899999987643
No 189
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.90 E-value=0.0022 Score=58.63 Aligned_cols=102 Identities=15% Similarity=0.032 Sum_probs=64.6
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+|+-|.+++-. ...+++ +.|..|||||.+.+--++..+...+ .+..+.|++++|+..|..+.+.+...
T Consensus 1 l~~eQ~~~i~~----~~~~~l----V~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 1 LTDEQRRIIRS----TEGPLL----VNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp S-HHHHHHHHS-----SSEEE----EEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC----CCCCEE----EEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHh
Confidence 46778887755 345667 8999999999988777776665432 23457999999999999999999987
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHH
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGI 283 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~ 283 (317)
+....... ...............+-|+|=..+..
T Consensus 69 l~~~~~~~---~~~~~~~~~~~~~~~~~i~T~hsf~~ 102 (315)
T PF00580_consen 69 LEEEQQES---SDNERLRRQLSNIDRIYISTFHSFCY 102 (315)
T ss_dssp HHHCCHCC---TT-HHHHHHHHHCTTSEEEEHHHHHH
T ss_pred cCcccccc---cccccccccccccchheeehhhhhhh
Confidence 65421100 00001222333444577777665543
No 190
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.89 E-value=0.0035 Score=63.82 Aligned_cols=92 Identities=14% Similarity=0.034 Sum_probs=66.8
Q ss_pred eccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC
Q psy10677 193 KAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI 272 (317)
Q Consensus 193 ~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ 272 (317)
.+-+|||||-.|+=-+-..+.. |-++|||+|...|+.|+.+.+++... +-.++.+.++.+..+....+..
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHH
Confidence 3446999999997665544432 56899999999999999999987654 2468889999988877765544
Q ss_pred -------cEEECcHHHHHHHhcCCCCCCCCc
Q psy10677 273 -------LTSATNTSLGIYLQQNDAHSPCLS 296 (317)
Q Consensus 273 -------ilv~TP~~l~~~l~~~~~~~~~ld 296 (317)
|+|||-.-+.- =-.++.+.++|
T Consensus 236 ~~~G~~~IViGtRSAvFa--P~~~LgLIIvd 264 (665)
T PRK14873 236 VLRGQARVVVGTRSAVFA--PVEDLGLVAIW 264 (665)
T ss_pred HhCCCCcEEEEcceeEEe--ccCCCCEEEEE
Confidence 79999654432 23455666666
No 191
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.84 E-value=0.0026 Score=64.63 Aligned_cols=118 Identities=11% Similarity=-0.014 Sum_probs=83.6
Q ss_pred CCCchhhhhcccccc--ccCc-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN--FQAK-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~--~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
.+...|..||..+.. .+|+ -++ ++.-||+|||... +.++.+|.+. +.--++|+|+-.+.|+.|-+..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raL----lvMATGTGKTrTA-iaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~a 234 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRAL----LVMATGTGKTRTA-IAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGA 234 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEE----EEEecCCCcceeH-HHHHHHHHhc-----chhheeeEEechHHHHHHHHHH
Confidence 337889888865532 0332 367 8889999999875 5677888775 3456899999999999999999
Q ss_pred HHHHhcCC-CcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC----------CCCCCCCchhHH
Q psy10677 243 ISIFSRTM-RIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN----------DAHSPCLSVWRR 300 (317)
Q Consensus 243 ~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~----------~~~~~~lde~d~ 300 (317)
+..+...- .++...-.++.. -..|.++|-.++..-+... ..++.++|||+|
T Consensus 235 f~~~~P~~~~~n~i~~~~~~~-------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR 296 (875)
T COG4096 235 FEDFLPFGTKMNKIEDKKGDT-------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR 296 (875)
T ss_pred HHHhCCCccceeeeecccCCc-------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh
Confidence 88887653 233233222222 2349999999988766653 467888999876
No 192
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=96.72 E-value=0.0018 Score=70.73 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=46.1
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
.||+|++ .|++|+.++||| ++|+|+ .++..|++|+.|... .+.+++.++.++.
T Consensus 307 HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDI------g~VDlVIq~gsP~sV------as~LQRiGRAGR~ 371 (1490)
T PRK09751 307 HHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDM------GAVDLVIQVATPLSV------ASGLQRIGRAGHQ 371 (1490)
T ss_pred ccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCc------ccCCEEEEeCCCCCH------HHHHHHhCCCCCC
Confidence 6899998 999999999999 999999 899999999988654 6788888877654
No 193
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=96.70 E-value=0.0027 Score=68.41 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=57.7
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCC---chhhhhhhcc-------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYE---KPAKWWDSNN------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~---K~~~L~~ll~------------------- 58 (317)
+||||++. +.+++.|.+.|+ |.|.... ..|+++|..+...+ +.+.+..++.
T Consensus 223 LmSATid~--e~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg 295 (1294)
T PRK11131 223 ITSATIDP--ERFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSG 295 (1294)
T ss_pred EeeCCCCH--HHHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCC
Confidence 58999985 578887777774 6664332 24677776654322 2222222210
Q ss_pred -----------------------CCCCccc-----eee-cCcccceec----ccccCCcCCCCCCcccccCCCC
Q psy10677 59 -----------------------GHYPKSV-----RFV-LGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYP 99 (317)
Q Consensus 59 -----------------------lhg~~~q-----~F~-~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~ 99 (317)
+||++++ -|+ .|..+|+|| ++|+|| .++..|+++.
T Consensus 296 ~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIAEtSITI------pgI~yVID~G 363 (1294)
T PRK11131 296 EREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTV------PGIKYVIDPG 363 (1294)
T ss_pred HHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEeccHHhhcccc------CcceEEEECC
Confidence 8999997 444 477899999 999999 7888888875
No 194
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.67 E-value=0.0061 Score=61.96 Aligned_cols=74 Identities=14% Similarity=0.215 Sum_probs=55.2
Q ss_pred CCCchhhhhccccccccC-cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQA-KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
.+++.|..|+..++ .. ..++ +.||+|||||... .-++.++.. .+.++|+++||..-|.++.+.+.
T Consensus 157 ~ln~~Q~~Av~~~l--~~~~~~l----I~GpPGTGKT~t~-~~ii~~~~~-------~g~~VLv~a~sn~Avd~l~e~l~ 222 (637)
T TIGR00376 157 NLNESQKEAVSFAL--SSKDLFL----IHGPPGTGKTRTL-VELIRQLVK-------RGLRVLVTAPSNIAVDNLLERLA 222 (637)
T ss_pred CCCHHHHHHHHHHh--cCCCeEE----EEcCCCCCHHHHH-HHHHHHHHH-------cCCCEEEEcCcHHHHHHHHHHHH
Confidence 56999999999988 65 5677 8999999999654 344444443 25699999999999988887776
Q ss_pred HHhcCCCcEEEEE
Q psy10677 245 IFSRTMRIRHACL 257 (317)
Q Consensus 245 ~l~~~~~~~~~~~ 257 (317)
.. +++++-+
T Consensus 223 ~~----~~~vvRl 231 (637)
T TIGR00376 223 LC----DQKIVRL 231 (637)
T ss_pred hC----CCcEEEe
Confidence 53 4555444
No 195
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.58 E-value=0.0049 Score=54.18 Aligned_cols=126 Identities=13% Similarity=0.072 Sum_probs=78.8
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhcccccc-ccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLN-FQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~-~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+|+....|..|+=.+... +. - .+.|.+....+.+ .+|.|.+ .+.-.|.|||-+ ++|++..+..
T Consensus 4 ~w~p~~~P~wLl~E~e~~-il-i---------R~~Q~~ia~~mi~~~~~~n~v----~QlnMGeGKTsV-I~Pmla~~LA 67 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIESN-IL-I---------RPVQVEIAREMISPPSGKNSV----MQLNMGEGKTSV-IVPMLALALA 67 (229)
T ss_pred CCCchhChHHHHHHHHcC-ce-e---------eHHHHHHHHHHhCCCCCCCeE----eeecccCCccch-HHHHHHHHHc
Confidence 466666666666555433 22 2 6688887777663 2478888 889999999955 6899888887
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcC-CCcEEE--EEECCCCHHH-HHH----------HccCcEEECcHH
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT-MRIRHA--CLYGGTSKMY-QVI----------LLRILTSATNTS 280 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~-~~~~~~--~~~gg~~~~~-~~~----------~~~~ilv~TP~~ 280 (317)
++ .-.+.+++| +.|..|..+.+..-... ++-++. -....++.+. ... .-..|+++||..
T Consensus 68 dg------~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEh 140 (229)
T PF12340_consen 68 DG------SRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEH 140 (229)
T ss_pred CC------CcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHH
Confidence 53 246666666 56999999888865443 333332 2223333221 111 112289999998
Q ss_pred HHHH
Q psy10677 281 LGIY 284 (317)
Q Consensus 281 l~~~ 284 (317)
++.+
T Consensus 141 ilSf 144 (229)
T PF12340_consen 141 ILSF 144 (229)
T ss_pred HHHH
Confidence 8654
No 196
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.54 E-value=0.0053 Score=52.98 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=45.2
Q ss_pred CCchhhhhccccccccCc-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAK-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
|++-|.+|+-.+++ ++. =++ ++|+.|||||.+ +-.+...+.. .+.++++++||...+..+.+..
T Consensus 2 L~~~Q~~a~~~~l~-~~~~~~~----l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~ 66 (196)
T PF13604_consen 2 LNEEQREAVRAILT-SGDRVSV----LQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREKT 66 (196)
T ss_dssp S-HHHHHHHHHHHH-CTCSEEE----EEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-cCCeEEE----EEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhh
Confidence 58889999999973 332 355 679999999975 3345555554 3579999999999998877763
No 197
>COG4889 Predicted helicase [General function prediction only]
Probab=96.52 E-value=0.0078 Score=61.61 Aligned_cols=107 Identities=9% Similarity=0.007 Sum_probs=68.8
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+|+.+.- .++..+|.-+.=.+| .|+|+.|+...+ +|-..-.-=+++...|+|||++.+ -+.+.+.
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~---------R~hQq~Aid~a~--~~F~~n~RGkLIMAcGTGKTfTsL-kisEala-- 205 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKP---------RPHQQTAIDAAK--EGFSDNDRGKLIMACGTGKTFTSL-KISEALA-- 205 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCC---------ChhHHHHHHHHH--hhcccccCCcEEEecCCCccchHH-HHHHHHh--
Confidence 5555432 455555554444456 999999998887 543221111133456899998863 4444443
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHH
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMY 265 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~ 265 (317)
..+.|+|+|+-.|..|..+....=. .+.++...++++.....
T Consensus 206 -------~~~iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsr 247 (1518)
T COG4889 206 -------AARILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSR 247 (1518)
T ss_pred -------hhheEeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccc
Confidence 2689999999999999876655432 35788888887755443
No 198
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=96.45 E-value=0.0012 Score=69.50 Aligned_cols=78 Identities=13% Similarity=0.034 Sum_probs=63.2
Q ss_pred EEEEEEccCCCchhhhhhhcc---------CCCCccc--------eeecC--cccceec----ccccCCcCCCCCCcccc
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN---------GHYPKSV--------RFVLG--TAGFLLS----AVSFSLPFRDDKTSVVT 94 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~---------lhg~~~q--------~F~~g--~~~iLva----arg~~~~lr~~~~d~~~ 94 (317)
+..+++|...+....|...|. +||+|++ .|+++ .++|||| +||+|+ ....+
T Consensus 494 ~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNl------q~a~~ 567 (956)
T PRK04914 494 EKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNF------QFASH 567 (956)
T ss_pred CeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCc------ccccE
Confidence 345567777666777766662 9999998 89874 6999999 999999 88999
Q ss_pred cCCCCCCCccccCCCCHHHHHHHHHHCCceeec
Q psy10677 95 VPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 95 v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
|++|++|... ..+++++++.++++-++
T Consensus 568 VInfDlP~nP------~~~eQRIGR~~RiGQ~~ 594 (956)
T PRK04914 568 LVLFDLPFNP------DLLEQRIGRLDRIGQKH 594 (956)
T ss_pred EEEecCCCCH------HHHHHHhcccccCCCCc
Confidence 9999999765 68889999888887655
No 199
>KOG0390|consensus
Probab=96.26 E-value=0.019 Score=58.66 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=85.1
Q ss_pred CCCCchhhhhcccccc----c----cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHH
Q psy10677 165 KKCGDKESKNWTIPLN----F----QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELA 236 (317)
Q Consensus 165 ~~~t~iQ~~~ip~~l~----~----~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa 236 (317)
+++.|+|.+.+..+.. . ....+| +.-..|+|||+-. ++.+..++++.+.....--++||++|. -|+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCI----mAd~~GlGKTlq~-IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv 310 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCI----MADEPGLGKTLQC-ISFIWTLLRQFPQAKPLINKPLVVAPS-SLV 310 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceE----eeCCCCcchHHHH-HHHHHHHHHhCcCccccccccEEEccH-HHH
Confidence 4789999999977752 0 112233 3446799999754 566666666533211122579999995 577
Q ss_pred HHHHHHHHHHhcCCCcEEEEEECCCCH--HHH-------HHHccC-cEEECcHHH---HHHHhcCCCCCCCCchhHHHhh
Q psy10677 237 QQIQAVISIFSRTMRIRHACLYGGTSK--MYQ-------VILLRI-LTSATNTSL---GIYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 237 ~Qi~~~~~~l~~~~~~~~~~~~gg~~~--~~~-------~~~~~~-ilv~TP~~l---~~~l~~~~~~~~~lde~d~l~~ 303 (317)
.--++++.+|.....+....++|+.+. ..+ ...... +++-+=..+ .+.+..+...++++||.+++-.
T Consensus 311 ~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 311 NNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccc
Confidence 777788888877657888888888774 111 111111 344444444 4556678999999999877544
No 200
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.012 Score=57.26 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=50.9
Q ss_pred CchhhhhccccccccC-----cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQA-----KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g-----~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
+.=|-+||..+. .| +.-. ..|-||||||++-. -++..+ +--+||++|.+-||.|.|++
T Consensus 14 aGDQP~AI~~Lv--~gi~~g~~~Qt----LLGvTGSGKTfT~A-nVI~~~----------~rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 14 AGDQPEAIAELV--EGIENGLKHQT----LLGVTGSGKTFTMA-NVIAKV----------QRPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CCCcHHHHHHHH--HHHhcCceeeE----EeeeccCCchhHHH-HHHHHh----------CCCeEEEecchhHHHHHHHH
Confidence 888989998876 33 2334 56899999997642 223322 23489999999999999999
Q ss_pred HHHHhcCCCcEE
Q psy10677 243 ISIFSRTMRIRH 254 (317)
Q Consensus 243 ~~~l~~~~~~~~ 254 (317)
++.|..+.-+..
T Consensus 77 fk~fFP~NaVEY 88 (663)
T COG0556 77 FKEFFPENAVEY 88 (663)
T ss_pred HHHhCcCcceEE
Confidence 999986544443
No 201
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.08 E-value=0.0076 Score=61.34 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=34.7
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPS 102 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~ 102 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..+++++.|.
T Consensus 488 lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDi------P~v~~VIi~~~~r 537 (630)
T TIGR00643 488 LHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDV------PNATVMVIEDAER 537 (630)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCccc------CCCcEEEEeCCCc
Confidence 9999998 999999999999 999999 8888888888765
No 202
>KOG1803|consensus
Probab=95.99 E-value=0.011 Score=58.30 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=51.8
Q ss_pred CCCCCCchhhhhccccccccCcC-cccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 163 KNKKCGDKESKNWTIPLNFQAKK-FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 163 ~~~~~t~iQ~~~ip~~l~~~g~d-vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
..+.+.+-|.+|+...+ .-++ .+ +.||+|+|||.....-+.+.+ ++ +-++||.+||++-+.-|.+
T Consensus 182 ~~~~ln~SQk~Av~~~~--~~k~l~~----I~GPPGTGKT~TlvEiI~qlv-k~-------~k~VLVcaPSn~AVdNive 247 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAI--NNKDLLI----IHGPPGTGKTRTLVEIISQLV-KQ-------KKRVLVCAPSNVAVDNIVE 247 (649)
T ss_pred CCccccHHHHHHHHHHh--ccCCceE----eeCCCCCCceeeHHHHHHHHH-Hc-------CCeEEEEcCchHHHHHHHH
Confidence 34577899999999988 5544 45 779999999988766555444 33 4689999999998888877
Q ss_pred HHH
Q psy10677 242 VIS 244 (317)
Q Consensus 242 ~~~ 244 (317)
.+.
T Consensus 248 rl~ 250 (649)
T KOG1803|consen 248 RLT 250 (649)
T ss_pred Hhc
Confidence 543
No 203
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.89 E-value=0.023 Score=57.93 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=50.0
Q ss_pred Cchhhhhccccccc--cC-cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNF--QA-KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 168 t~iQ~~~ip~~l~~--~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
+..|..++..+.+. +| +..+ +.|-||||||+... -++..+ +-.+|||+|++.+|.|+++.++
T Consensus 11 ~~~Q~~ai~~l~~~~~~~~~~~~----l~Gvtgs~kt~~~a-~~~~~~----------~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 11 AGDQPKAIAKLVEGLTDGEKHQT----LLGVTGSGKTFTMA-NVIAQV----------NRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred ChHHHHHHHHHHHhhhcCCCcEE----EECCCCcHHHHHHH-HHHHHh----------CCCEEEEECCHHHHHHHHHHHH
Confidence 99999999887620 22 2456 78999999997643 233322 2248999999999999999999
Q ss_pred HHhcC
Q psy10677 245 IFSRT 249 (317)
Q Consensus 245 ~l~~~ 249 (317)
.|...
T Consensus 76 ~f~p~ 80 (655)
T TIGR00631 76 EFFPE 80 (655)
T ss_pred HhCCC
Confidence 99764
No 204
>KOG0950|consensus
Probab=95.81 E-value=0.0053 Score=63.20 Aligned_cols=132 Identities=14% Similarity=0.044 Sum_probs=97.5
Q ss_pred ccCcCCCCCCCcCCCCCCCCchhhhhc--cccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceE
Q psy10677 149 PMKPKTTNNENNHNKNKKCGDKESKNW--TIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIA 226 (317)
Q Consensus 149 ~l~~~g~~~p~~~~~~~~~t~iQ~~~i--p~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~a 226 (317)
..+..|.... ...|.+++ |.++ .++|.+ -.+||+.|||++.-+=++..+...+ -.+
T Consensus 215 ~~~~kgi~~~---------fewq~ecls~~~~~--e~~nli----ys~Pts~gktlvaeilml~~~l~~r-------r~~ 272 (1008)
T KOG0950|consen 215 YAKDKGILKL---------FEWQAECLSLPRLL--ERKNLI----YSLPTSAGKTLVAEILMLREVLCRR-------RNV 272 (1008)
T ss_pred HHHhhhHHHH---------HHHHHHHhcchhhh--cccceE----EeCCCccchHHHHHHHHHHHHHHHh-------hce
Confidence 3445677777 99999887 7788 999999 9999999999999999998887653 246
Q ss_pred EEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHH----HHHhcCCCC---CCCCchhH
Q psy10677 227 LVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLG----IYLQQNDAH---SPCLSVWR 299 (317)
Q Consensus 227 lil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~----~~l~~~~~~---~~~lde~d 299 (317)
+.+.|--.-++.-...+..+....|+.+-+.+|+.+.....+. ..+-|||-.+=. .+++.++++ +.++||.+
T Consensus 273 llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~-~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElh 351 (1008)
T KOG0950|consen 273 LLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKR-ESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELH 351 (1008)
T ss_pred eEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcccc-eeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeee
Confidence 6666776666666667777777889999888877776544332 237888876543 456666544 67788876
Q ss_pred HHhh
Q psy10677 300 RLQD 303 (317)
Q Consensus 300 ~l~~ 303 (317)
.+.|
T Consensus 352 mi~d 355 (1008)
T KOG0950|consen 352 MIGD 355 (1008)
T ss_pred eeec
Confidence 6655
No 205
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.80 E-value=0.0072 Score=62.36 Aligned_cols=64 Identities=5% Similarity=-0.055 Sum_probs=47.8
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCC-CC-CcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRD-DK-TSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~-~~-~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
|||++.+ .++.| +|+|| +||+||++.+ +. ...-+|++|+.|... ..++++.+++.+.+
T Consensus 458 L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~------r~y~qr~GRtGR~G 529 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESR------RVDLQLRGRSGRQG 529 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCH------HHHHHhhccccCCC
Confidence 9999877 55555 79998 9999996542 11 122389999999765 78899999888887
Q ss_pred eecCCC
Q psy10677 125 LIGQNI 130 (317)
Q Consensus 125 ~~g~~~ 130 (317)
-.|..+
T Consensus 530 ~~G~s~ 535 (790)
T PRK09200 530 DPGSSQ 535 (790)
T ss_pred CCeeEE
Confidence 777654
No 206
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=95.77 E-value=0.022 Score=58.61 Aligned_cols=119 Identities=17% Similarity=0.117 Sum_probs=91.5
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
..+|...-=.+. . .-+ .--.||-|||++..+|+.-.-+. |-.+.+++-.--||..=..++..+.
T Consensus 82 ~dVQliG~i~lh--~--g~i----aEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 82 FDVQLLGGIVLH--L--GDI----AEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred hhHHHhhhhhhc--C--Cce----eeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHH
Confidence 556765443333 2 234 57789999999999998644332 4467788888999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccC-cEEECcHHHH-HHHhcC-----------CCCCCCCchhHHHh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRI-LTSATNTSLG-IYLQQN-----------DAHSPCLSVWRRLQ 302 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~-ilv~TP~~l~-~~l~~~-----------~~~~~~lde~d~l~ 302 (317)
..+|+++.+...+.+..++..+... |.-+|...|- |++..+ .+++.++||.|.++
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred HHcCCceeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 9999999999999999888887766 9999999884 444332 57788888888754
No 207
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.77 E-value=0.016 Score=54.66 Aligned_cols=87 Identities=11% Similarity=0.045 Sum_probs=58.3
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~ 271 (317)
+.|..|||||+..+ -++..+.. ...+..+++++++..|...+++.+..-.. ....
T Consensus 6 I~G~aGTGKTvla~-~l~~~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-------------------~~~~ 60 (352)
T PF09848_consen 6 ITGGAGTGKTVLAL-NLAKELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYN-------------------PKLK 60 (352)
T ss_pred EEecCCcCHHHHHH-HHHHHhhc-----cccCCceEEEEecchHHHHHHHHHhhhcc-------------------cchh
Confidence 88999999997643 33333411 13467899999999999988877765440 0111
Q ss_pred CcEEECcHHHHHHHh-----cCCCCCCCCchhHHHhh
Q psy10677 272 ILTSATNTSLGIYLQ-----QNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 272 ~ilv~TP~~l~~~l~-----~~~~~~~~lde~d~l~~ 303 (317)
...+..|..+...+. ....+...+|||.+|.+
T Consensus 61 ~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 61 KSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 234445555555444 35788899999999988
No 208
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.74 E-value=0.01 Score=54.01 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=39.6
Q ss_pred CCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHH
Q psy10677 128 QNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILP 207 (317)
Q Consensus 128 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp 207 (317)
..+|..+.+|+++++|+-+.+.+. .| .|- |+ +.+|||||||.+ +..
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~-----~~-----------------------~GL-IL----VTGpTGSGKSTT-lAa 144 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAE-----SP-----------------------RGL-IL----VTGPTGSGKSTT-LAA 144 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHh-----CC-----------------------Cce-EE----EeCCCCCcHHHH-HHH
Confidence 357888889999998887777332 23 111 34 899999999965 467
Q ss_pred HHHHHHcCC
Q psy10677 208 ALYHILKMP 216 (317)
Q Consensus 208 ~l~~l~~~~ 216 (317)
+++++.+..
T Consensus 145 mId~iN~~~ 153 (353)
T COG2805 145 MIDYINKHK 153 (353)
T ss_pred HHHHHhccC
Confidence 888888754
No 209
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.69 E-value=0.028 Score=53.25 Aligned_cols=88 Identities=15% Similarity=0.130 Sum_probs=51.4
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHHhcCCCcEEEEEECC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT-RELAQQIQAVISIFSRTMRIRHACLYGG 260 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg 260 (317)
.|..++ +.+|||+|||....-=.-..+... +...-++|-+-+ |.=+ .++++.+++.+++.+..+..+
T Consensus 136 ~g~ii~----lvGptGvGKTTtiakLA~~~~~~~-----G~~~V~lit~D~~R~ga---~EqL~~~a~~~gv~~~~~~~~ 203 (374)
T PRK14722 136 RGGVFA----LMGPTGVGKTTTTAKLAARCVMRF-----GASKVALLTTDSYRIGG---HEQLRIFGKILGVPVHAVKDG 203 (374)
T ss_pred CCcEEE----EECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecccccccH---HHHHHHHHHHcCCceEecCCc
Confidence 577788 999999999987644332222221 111123332222 2222 355666677677777766665
Q ss_pred CCHHHHHHHccC---cEEECcHHH
Q psy10677 261 TSKMYQVILLRI---LTSATNTSL 281 (317)
Q Consensus 261 ~~~~~~~~~~~~---ilv~TP~~l 281 (317)
.+.......+.+ ++|=|||+.
T Consensus 204 ~~l~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 204 GDLQLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred ccHHHHHHHhcCCCEEEEcCCCCC
Confidence 555555554444 799999976
No 210
>KOG1802|consensus
Probab=95.65 E-value=0.022 Score=56.83 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=59.1
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
+++.-|..|+..+| ...=-+ +++|+|+|||.+-.- |+.|+.++ ....+|+.+|+.--+.|+.+.+.+
T Consensus 410 kLN~SQ~~AV~~VL--~rplsL----IQGPPGTGKTvtsa~-IVyhl~~~------~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 410 KLNASQSNAVKHVL--QRPLSL----IQGPPGTGKTVTSAT-IVYHLARQ------HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hhchHHHHHHHHHH--cCCcee----eecCCCCCceehhHH-HHHHHHHh------cCCceEEEcccchhHHHHHHHHHh
Confidence 44999999999999 666666 789999999987643 44555543 356799999999999888776665
Q ss_pred HhcCCCcEEEEEEC
Q psy10677 246 FSRTMRIRHACLYG 259 (317)
Q Consensus 246 l~~~~~~~~~~~~g 259 (317)
- |++++-++.
T Consensus 477 t----gLKVvRl~a 486 (935)
T KOG1802|consen 477 T----GLKVVRLCA 486 (935)
T ss_pred c----CceEeeeeh
Confidence 3 678777653
No 211
>KOG2340|consensus
Probab=95.42 E-value=0.037 Score=53.83 Aligned_cols=76 Identities=24% Similarity=0.267 Sum_probs=57.7
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCC---hh--HHHHHHHHHHHHHcCCCC---------C------------
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQS---RS--VFTYILPALYHILKMPKL---------E------------ 219 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGs---GK--Tla~~lp~l~~l~~~~~~---------~------------ 219 (317)
-+|+.|.+.+-.+. +=+|++ .|++| |+ +-.|++=+|+|+.+.+.. +
T Consensus 216 pltalQ~~L~~~m~--~YrDl~------y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~fr 287 (698)
T KOG2340|consen 216 PLTALQKELFKIMF--NYRDLL------YPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFR 287 (698)
T ss_pred cchHHHHHHHHHHH--hhhhhc------cccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhh
Confidence 36999999998888 888988 45544 44 567999999999754310 0
Q ss_pred --CCCCceEEEEcCcHHHHHHHHHHHHHHhcC
Q psy10677 220 --EGDGPIALVLAPTRELAQQIQAVISIFSRT 249 (317)
Q Consensus 220 --~~~~~~alil~PtreLa~Qi~~~~~~l~~~ 249 (317)
.-..|.+||+||+||-|..+.+.+..++.+
T Consensus 288 DQG~tRpkVLivvpfRe~A~riVn~lis~l~G 319 (698)
T KOG2340|consen 288 DQGFTRPKVLIVVPFRESAYRIVNLLISLLSG 319 (698)
T ss_pred hcCCCCceEEEEecchHHHHHHHHHHHHHhcC
Confidence 012599999999999999999998888543
No 212
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=95.25 E-value=0.006 Score=43.91 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=40.2
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEH 121 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~ 121 (317)
+||++++ .|++|...+||| ++|+|+ .+...+..++.|... ..+....++-+
T Consensus 13 i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~------~~~~~vi~~~~~~~~------~~~~Q~~GR~~ 75 (78)
T PF00271_consen 13 IHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDL------PDASHVIFYDPPWSP------EEYIQRIGRAG 75 (78)
T ss_dssp ESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTS------TTESEEEESSSESSH------HHHHHHHTTSS
T ss_pred EECCCCHHHHHHHHHHhhccCceEEEeeccccccccc------cccccccccccCCCH------HHHHHHhhcCC
Confidence 8999987 999999999999 999999 788888888876543 45555554433
No 213
>PRK13767 ATP-dependent helicase; Provisional
Probab=95.23 E-value=0.0072 Score=63.74 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=44.6
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHN 122 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~ 122 (317)
+||+|++ +|++|+.++||| ++|+|+ .++..|++|+.|... .+.+++.++.++
T Consensus 320 hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDi------p~Vd~VI~~~~P~sv------~~ylQRiGRaGR 383 (876)
T PRK13767 320 HHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDI------GYIDLVVLLGSPKSV------SRLLQRIGRAGH 383 (876)
T ss_pred eeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCC------CCCcEEEEeCCCCCH------HHHHHhcccCCC
Confidence 8999998 899999999999 999999 889999999988643 577777776654
No 214
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=95.10 E-value=0.059 Score=58.49 Aligned_cols=62 Identities=10% Similarity=0.023 Sum_probs=42.4
Q ss_pred CCCCccc-----eeecC-cccceec----ccccCCcCCCCCCcccccCCCCCCCccc------c-----CCCC-HHHHHH
Q psy10677 59 GHYPKSV-----RFVLG-TAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNH------L-----QGKT-KEEIDS 116 (317)
Q Consensus 59 lhg~~~q-----~F~~g-~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~------i-----~~~~-~~~i~~ 116 (317)
+||+|++ .|+.+ ..+|+|| ++|+|| .++..|+++.++.... + ...+ .+.+++
T Consensus 312 Lhg~Ls~~eQ~~vf~~~~~rkIVLATNIAEtSLTI------pgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QR 385 (1283)
T TIGR01967 312 LYARLSNKEQQRVFQPHSGRRIVLATNVAETSLTV------PGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQR 385 (1283)
T ss_pred ccCCCCHHHHHHHhCCCCCceEEEeccHHHhcccc------CCeeEEEeCCCccccccccccCccccCCccCCHHHHHHH
Confidence 8999997 56655 3589988 999999 8888888887543211 1 1112 467777
Q ss_pred HHHHCCceeec
Q psy10677 117 FRKEHNITLIG 127 (317)
Q Consensus 117 ~~~~~~i~~~g 127 (317)
-++.++.. .|
T Consensus 386 aGRAGR~~-~G 395 (1283)
T TIGR01967 386 KGRCGRVA-PG 395 (1283)
T ss_pred hhhhCCCC-Cc
Confidence 77777664 44
No 215
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.05 E-value=0.046 Score=56.06 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=55.1
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+++-|.+|+-. ...+++ +.|..|||||.+.+--+...+... ....-+.|+++.||..|..+.+.+..
T Consensus 196 ~L~~~Q~~av~~----~~~~~l----V~agaGSGKT~vl~~r~ayLl~~~----~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 196 PLNPSQARAVVN----GEDSLL----VLAGAGSGKTSVLVARAGWLLARG----QAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCHHHHHHHhC----CCCCeE----EEEeCCCCHHHHHHHHHHHHHHhC----CCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 469999998843 334577 899999999988765554444332 12345899999999999999988877
Q ss_pred HhcCCCcEEE
Q psy10677 246 FSRTMRIRHA 255 (317)
Q Consensus 246 l~~~~~~~~~ 255 (317)
.....++.+.
T Consensus 264 ~lg~~~v~v~ 273 (684)
T PRK11054 264 RLGTEDITAR 273 (684)
T ss_pred hcCCCCcEEE
Confidence 6543234433
No 216
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.02 E-value=0.052 Score=55.68 Aligned_cols=70 Identities=7% Similarity=-0.100 Sum_probs=52.5
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+++-|.+|+.. ....++ +.|..|||||.+..--+...+.... ...-+.|+|+.|+..|..+.+.+.++
T Consensus 3 Ln~~Q~~av~~----~~g~~l----V~AgpGSGKT~vL~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 3 LNPGQQQAVEF----VTGPCL----VLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCHHHHHHHhC----CCCCEE----EEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeeeEechHHHHHHHHHHHHHH
Confidence 58899998854 334677 8999999999987666665554321 12347999999999999999988877
Q ss_pred hc
Q psy10677 247 SR 248 (317)
Q Consensus 247 ~~ 248 (317)
..
T Consensus 71 l~ 72 (672)
T PRK10919 71 LG 72 (672)
T ss_pred hC
Confidence 54
No 217
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.94 E-value=0.085 Score=56.20 Aligned_cols=108 Identities=15% Similarity=0.067 Sum_probs=73.4
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.++.-+ +.--+|||||++-+... ..+... ...|.+++|+=.++|-.|+.+.+.++........ .-.
T Consensus 272 ~~~~G~----IWHtqGSGKTlTm~~~A-~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~ 337 (962)
T COG0610 272 DGKGGY----IWHTQGSGKTLTMFKLA-RLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAE 337 (962)
T ss_pred cCCceE----EEeecCCchHHHHHHHH-HHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----ccc
Confidence 345566 77889999999744332 222222 3579999999999999999999999988643322 334
Q ss_pred CHHHHHHHcc----CcEEECcHHHHHHHhcC------C-CCCCCCchhHHHhh
Q psy10677 262 SKMYQVILLR----ILTSATNTSLGIYLQQN------D-AHSPCLSVWRRLQD 303 (317)
Q Consensus 262 ~~~~~~~~~~----~ilv~TP~~l~~~l~~~------~-~~~~~lde~d~l~~ 303 (317)
+..+-...+. .|+|+|=..+-..+... . =-...+|||+|-..
T Consensus 338 s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~ 390 (962)
T COG0610 338 STSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY 390 (962)
T ss_pred CHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc
Confidence 4454444444 38999999998877653 1 11345789987543
No 218
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=94.85 E-value=0.012 Score=60.41 Aligned_cols=70 Identities=4% Similarity=-0.027 Sum_probs=49.8
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCC---CCcccccCCCCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDD---KTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~---~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
|||++.| +|+.| .|+|| +||+||++... -.....+.+|+.|+.. .++++.+++.+.
T Consensus 454 L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-------id~qr~GRtGRq 524 (762)
T TIGR03714 454 LNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSR-------VDLQLRGRSGRQ 524 (762)
T ss_pred ecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcH-------HHHHhhhcccCC
Confidence 9999998 55555 78999 99999976432 1245667888888754 558999999988
Q ss_pred eeecCCCCCCcccccC
Q psy10677 124 TLIGQNIPKPVKTLDE 139 (317)
Q Consensus 124 ~~~g~~~~~~~~~f~~ 139 (317)
+-.|... .+.+.+|
T Consensus 525 G~~G~s~--~~is~eD 538 (762)
T TIGR03714 525 GDPGSSQ--FFVSLED 538 (762)
T ss_pred CCceeEE--EEEccch
Confidence 8777654 3344444
No 219
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.49 E-value=0.11 Score=53.26 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=51.4
Q ss_pred CCCchhhhhccccccc--cC-cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNF--QA-KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~--~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
++++.|..++..+.+. +| +..+ +.+.+|||||+... .++... +..+|||+|+.++|.|+++.
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~l----l~Gl~gs~ka~lia-~l~~~~----------~r~vLIVt~~~~~A~~l~~d 76 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQT----LLGVTGSGKTFTMA-NVIARL----------QRPTLVLAHNKTLAAQLYSE 76 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEE----EEcCCCcHHHHHHH-HHHHHh----------CCCEEEEECCHHHHHHHHHH
Confidence 3499999999888631 22 2456 88999999997743 233221 23599999999999999999
Q ss_pred HHHHhcC
Q psy10677 243 ISIFSRT 249 (317)
Q Consensus 243 ~~~l~~~ 249 (317)
++.+...
T Consensus 77 L~~~~~~ 83 (652)
T PRK05298 77 FKEFFPE 83 (652)
T ss_pred HHHhcCC
Confidence 9999754
No 220
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.46 E-value=0.017 Score=58.89 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=65.8
Q ss_pred EEEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCC
Q psy10677 39 QFVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSY 98 (317)
Q Consensus 39 q~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf 98 (317)
+.+++|...+..+.|...|. +||++++ +|+.|++.+||| +||+|+ .++..++++
T Consensus 444 ~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDi------P~v~lVvi~ 517 (655)
T TIGR00631 444 RVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDL------PEVSLVAIL 517 (655)
T ss_pred EEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeee------CCCcEEEEe
Confidence 34566666666666666664 8999997 999999999988 999999 888888877
Q ss_pred C-----CCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcC
Q psy10677 99 P-----DPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPK 153 (317)
Q Consensus 99 ~-----~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~ 153 (317)
+ .|.. ....+++.++..+. ..|.. ..|-+ .....+..++.+.
T Consensus 518 DadifG~p~~------~~~~iqriGRagR~-~~G~v-----i~~~~-~~~~~~~~ai~~~ 564 (655)
T TIGR00631 518 DADKEGFLRS------ERSLIQTIGRAARN-VNGKV-----IMYAD-KITDSMQKAIEET 564 (655)
T ss_pred CcccccCCCC------HHHHHHHhcCCCCC-CCCEE-----EEEEc-CCCHHHHHHHHHH
Confidence 7 3432 25788888887775 34432 23433 3445555555543
No 221
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.26 E-value=0.1 Score=54.03 Aligned_cols=71 Identities=10% Similarity=0.028 Sum_probs=52.9
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.|++-|.+|+-. ....++ +.|..|||||.+..-=+...+.... ...-..|+|+-|+..|..+.+.+.+
T Consensus 4 ~Ln~~Q~~av~~----~~g~~l----V~AgaGSGKT~~L~~Ria~Li~~~~----v~p~~IL~lTFTnkAA~em~~Rl~~ 71 (715)
T TIGR01075 4 GLNDKQREAVAA----PPGNLL----VLAGAGSGKTRVLTHRIAWLLSVEN----ASPHSIMAVTFTNKAAAEMRHRIGA 71 (715)
T ss_pred ccCHHHHHHHcC----CCCCEE----EEecCCCCHHHHHHHHHHHHHHcCC----CCHHHeEeeeccHHHHHHHHHHHHH
Confidence 459999998854 335678 9999999999886555544443211 1234899999999999999999988
Q ss_pred Hhc
Q psy10677 246 FSR 248 (317)
Q Consensus 246 l~~ 248 (317)
+..
T Consensus 72 ~~~ 74 (715)
T TIGR01075 72 LLG 74 (715)
T ss_pred Hhc
Confidence 764
No 222
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.25 E-value=0.11 Score=53.20 Aligned_cols=70 Identities=9% Similarity=-0.043 Sum_probs=53.0
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+++-|.+++-. .+.+++ +.|..|||||.+.+--+...+.... ......|+++.|+.-|.++.+.+.+.
T Consensus 2 Ln~~Q~~av~~----~~~~~~----V~Ag~GSGKT~~L~~ri~~ll~~~~----~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEY----VTGPCL----VLAGAGSGKTRVITNKIAYLIQNCG----YKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhC----CCCCEE----EEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 58889888743 445788 9999999999887766665554321 12357899999999999999988876
Q ss_pred hc
Q psy10677 247 SR 248 (317)
Q Consensus 247 ~~ 248 (317)
..
T Consensus 70 l~ 71 (664)
T TIGR01074 70 LG 71 (664)
T ss_pred hC
Confidence 64
No 223
>KOG0385|consensus
Probab=94.11 E-value=0.28 Score=49.96 Aligned_cols=126 Identities=12% Similarity=0.082 Sum_probs=77.7
Q ss_pred CCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
++.+.|.+.+.=+.. ..|-+.| ..-+-|=|||+-- +++|.++.... ..+|| -||+||-.-|.. -.+++
T Consensus 167 ~lr~YQveGlnWLi~l~engingI----LaDEMGLGKTlQt-Is~l~yl~~~~---~~~GP-fLVi~P~StL~N-W~~Ef 236 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGI----LADEMGLGKTLQT-ISLLGYLKGRK---GIPGP-FLVIAPKSTLDN-WMNEF 236 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccE----eehhcccchHHHH-HHHHHHHHHhc---CCCCC-eEEEeeHhhHHH-HHHHH
Confidence 446667665533321 3688888 8889999999742 34444544321 12455 477889766643 34445
Q ss_pred HHHhcCCCcEEEEEECCCCHHHHH--HHccC----cEEECcHHHH---HHHhcCCCCCCCCchhHHHhh
Q psy10677 244 SIFSRTMRIRHACLYGGTSKMYQV--ILLRI----LTSATNTSLG---IYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~~~~~--~~~~~----ilv~TP~~l~---~~l~~~~~~~~~lde~d~l~~ 303 (317)
++|+. ++++++++|+....... ..+.. |+|+|=.-.+ +.++.-.-++.++|||+|+=.
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN 303 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKN 303 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcc
Confidence 55555 68889998876433221 11111 5777765444 467777788999999998754
No 224
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.07 E-value=0.065 Score=55.78 Aligned_cols=105 Identities=15% Similarity=-0.054 Sum_probs=62.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc-CCCcEEEEEECC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR-TMRIRHACLYGG 260 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~-~~~~~~~~~~gg 260 (317)
...-++ ++||||||||...=.-+++... ..+....+.=|-|--|..+.+.+..-.. ..|=.|+.-.-.
T Consensus 64 ~~~vvi----i~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRf 132 (845)
T COG1643 64 QNQVVI----IVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRF 132 (845)
T ss_pred hCCEEE----EeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEe
Confidence 445566 8999999999875444443322 1233555566777666665555443332 223223222221
Q ss_pred CCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhHH
Q psy10677 261 TSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWRR 300 (317)
Q Consensus 261 ~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~ 300 (317)
.+. ...-..|-+.|.|-|+..++. ..++...+|||++
T Consensus 133 e~~---~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHE 173 (845)
T COG1643 133 ESK---VSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHE 173 (845)
T ss_pred ecc---CCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhh
Confidence 111 111123889999999999885 4788889999864
No 225
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=94.06 E-value=0.098 Score=53.75 Aligned_cols=102 Identities=8% Similarity=-0.080 Sum_probs=62.9
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~ 271 (317)
+.||.|||||.+.+-++-+.+. ...-++|+++..+.|+.++.+.++...-. |+.. |.+.+.......-.
T Consensus 54 VRSpMGTGKTtaLi~wLk~~l~-------~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~---Y~d~~~~~i~~~~~ 122 (824)
T PF02399_consen 54 VRSPMGTGKTTALIRWLKDALK-------NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVN---YLDSDDYIIDGRPY 122 (824)
T ss_pred EECCCCCCcHHHHHHHHHHhcc-------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-ccee---eecccccccccccc
Confidence 6899999999887554433332 13568999999999999998888754321 2221 21111110000111
Q ss_pred CcEEECcHHHHHHHhc--CCCCCCCCchhHHHhhh
Q psy10677 272 ILTSATNTSLGIYLQQ--NDAHSPCLSVWRRLQDI 304 (317)
Q Consensus 272 ~ilv~TP~~l~~~l~~--~~~~~~~lde~d~l~~~ 304 (317)
+-+++.-..|..+-.. +..+++.|||+...+..
T Consensus 123 ~rLivqIdSL~R~~~~~l~~yDvVIIDEv~svL~q 157 (824)
T PF02399_consen 123 DRLIVQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQ 157 (824)
T ss_pred CeEEEEehhhhhcccccccccCEEEEehHHHHHHH
Confidence 2455555566655432 24789999999999984
No 226
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.02 E-value=0.13 Score=53.32 Aligned_cols=70 Identities=10% Similarity=0.027 Sum_probs=52.3
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
|++-|.+|+-. ....++ +.|..|||||.+..-=+...+.... -..-..|+|+-|+..|..+.+.+.++
T Consensus 10 Ln~~Q~~av~~----~~g~~l----V~AgaGSGKT~vl~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 10 LNDKQREAVAA----PLGNML----VLAGAGSGKTRVLVHRIAWLMQVEN----ASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred cCHHHHHHHhC----CCCCEE----EEecCCCCHHHHHHHHHHHHHHcCC----CChhHeEeeeccHHHHHHHHHHHHHH
Confidence 49999998853 335677 9999999999887655554443221 12347999999999999999999887
Q ss_pred hc
Q psy10677 247 SR 248 (317)
Q Consensus 247 ~~ 248 (317)
..
T Consensus 78 ~~ 79 (721)
T PRK11773 78 LG 79 (721)
T ss_pred hc
Confidence 64
No 227
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=93.99 E-value=0.023 Score=58.03 Aligned_cols=82 Identities=11% Similarity=0.075 Sum_probs=58.3
Q ss_pred EEEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCC
Q psy10677 39 QFVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSY 98 (317)
Q Consensus 39 q~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf 98 (317)
+.+++|...+..+.|..+|. +||++++ .|+.|++.++|| +||+|+ .++..++++
T Consensus 448 ~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdl------p~v~lVii~ 521 (652)
T PRK05298 448 RVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDI------PEVSLVAIL 521 (652)
T ss_pred EEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccc------cCCcEEEEe
Confidence 45667777667777776665 8999997 999999999988 999999 788877777
Q ss_pred CCCCccccCCCCHHHHHHHHHHCCceeecC
Q psy10677 99 PDPSVNHLQGKTKEEIDSFRKEHNITLIGQ 128 (317)
Q Consensus 99 ~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~ 128 (317)
+.+.... ......++++.++..+. ..|.
T Consensus 522 d~eifG~-~~~~~~yiqr~GR~gR~-~~G~ 549 (652)
T PRK05298 522 DADKEGF-LRSERSLIQTIGRAARN-VNGK 549 (652)
T ss_pred CCccccc-CCCHHHHHHHhccccCC-CCCE
Confidence 7432110 01125788888777764 3443
No 228
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.77 E-value=0.065 Score=49.84 Aligned_cols=39 Identities=5% Similarity=0.077 Sum_probs=27.9
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
++.|...+..+.. .+++++ ++|+|||||| +++-.++..+
T Consensus 134 ~~~~~~~L~~~v~-~~~~il----I~G~tGSGKT-Tll~aL~~~~ 172 (319)
T PRK13894 134 TAAQREAIIAAVR-AHRNIL----VIGGTGSGKT-TLVNAIINEM 172 (319)
T ss_pred CHHHHHHHHHHHH-cCCeEE----EECCCCCCHH-HHHHHHHHhh
Confidence 4456666654442 788999 9999999999 5556666654
No 229
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.76 E-value=0.12 Score=47.20 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=16.8
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEc
Q psy10677 3 SATWPREIQKLAKEFLSDPIQLNVG 27 (317)
Q Consensus 3 SAT~~~~v~~l~~~~l~~p~~i~v~ 27 (317)
-.|+.+.++.+...+=.|.+.++..
T Consensus 8 a~~~~eal~~ik~elG~dAvIls~r 32 (282)
T TIGR03499 8 APTMREALAKVKEELGPDAVILSTR 32 (282)
T ss_pred cCCHHHHHHHHHHHHCCCcEEEEee
Confidence 3567777777777766677776543
No 230
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=93.60 E-value=0.16 Score=53.59 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=41.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
+..++. +..+||||||.+|+-.|+...... ..-+.||+||+.+.-..+.+.+.
T Consensus 58 ~~~n~~----~~M~TGtGKT~~~~~~i~~l~~~~------~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 58 DKANID----IKMETGTGKTYVYTRLMYELHQKY------GLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred ccceEE----EEeCCCCCHHHHHHHHHHHHHHHc------CCcEEEEEeCCHHHHHHHHHHhh
Confidence 345677 899999999999988887654432 34689999999988888876665
No 231
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=93.42 E-value=0.075 Score=46.17 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=39.6
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRE 234 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptre 234 (317)
.|.-|..++..++ ...-++ +.||.|||||+..+...++.+... .--+.+|.-|+-+
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~----~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVI----VNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVE 60 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEE----EE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--
T ss_pred CCHHHHHHHHHHH--hCCeEE----EECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCC
Confidence 3889999999999 888888 999999999999999998888752 2335666666543
No 232
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.32 E-value=0.23 Score=54.57 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=71.9
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+|+-|.+||- - .|.+++ +.|.-|||||...+--++..+... ..--+.|+++=|+.-|..+.+.+.+-
T Consensus 2 ~t~~Q~~ai~--~--~~~~~l----v~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 2 WTDEQWQAIY--T--RGQNIL----VSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCHHHHHHHh--C--CCCCEE----EEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHH
Confidence 5889999986 3 889999 999999999999877777776542 11236899999999998888888765
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHH-HHhc
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGI-YLQQ 287 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~-~l~~ 287 (317)
.... +.-. -.......|...+...-|+|=..++. +++.
T Consensus 69 l~~~-~~~~--p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~ 107 (1232)
T TIGR02785 69 LQKA-LQQE--PNSKHLRRQLALLNTANISTLHSFCLKVIRK 107 (1232)
T ss_pred HHHH-HhcC--chhHHHHHHHhhccCCeEeeHHHHHHHHHHH
Confidence 5421 1000 01111334555555678899887764 4443
No 233
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.03 E-value=0.26 Score=47.52 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=52.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.|.-+. ++||||+|||.....=.-..+... +...-++|.+.|--.+ -.+++..+++.+|+.+..+....
T Consensus 190 ~g~vi~----lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~~~ 258 (420)
T PRK14721 190 QGGVYA----LIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKDIA 258 (420)
T ss_pred CCcEEE----EECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCCCHH
Confidence 566677 899999999987643222222221 1123466666663332 23446666666677766665554
Q ss_pred CHHHHHHHccC---cEEECcHHHH
Q psy10677 262 SKMYQVILLRI---LTSATNTSLG 282 (317)
Q Consensus 262 ~~~~~~~~~~~---ilv~TP~~l~ 282 (317)
+.......++. ++|-|+|+..
T Consensus 259 dl~~al~~l~~~d~VLIDTaGrsq 282 (420)
T PRK14721 259 DLQLMLHELRGKHMVLIDTVGMSQ 282 (420)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCc
Confidence 44444444433 7999998764
No 234
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.01 E-value=0.27 Score=49.80 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=49.0
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHH--HHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY--ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~--~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+.|+.|+-..+ ..+-++ +.|++|+|||..- ++..+..+.. .....+++.+||..-|..+.+.+..
T Consensus 154 ~d~Qk~Av~~a~--~~~~~v----ItGgpGTGKTt~v~~ll~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 154 VDWQKVAAAVAL--TRRISV----ISGGPGTGKTTTVAKLLAALIQLAD------GERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CHHHHHHHHHHh--cCCeEE----EEeCCCCCHHHHHHHHHHHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHh
Confidence 578999999988 888888 9999999999753 3333322211 1245788899999888888776654
Q ss_pred H
Q psy10677 246 F 246 (317)
Q Consensus 246 l 246 (317)
.
T Consensus 222 ~ 222 (615)
T PRK10875 222 A 222 (615)
T ss_pred h
Confidence 3
No 235
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=92.95 E-value=0.12 Score=51.65 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=67.6
Q ss_pred cccCCChHHHHHHHHhcC--CCEEE--EEcCCCC-----CCC-------------cCcEE-EEEEccCCCchhhhhhhcc
Q psy10677 2 WSATWPREIQKLAKEFLS--DPIQL--NVGSANL-----AAN-------------PNIKQ-FVEICHEYEKPAKWWDSNN 58 (317)
Q Consensus 2 FSAT~~~~v~~l~~~~l~--~p~~i--~v~~~~~-----~~~-------------~~i~q-~~~~~~~~~K~~~L~~ll~ 58 (317)
++||-++.++.-+...|. +|..+ +....++ ... ..-.+ -.++|..+.+.+-+..-|+
T Consensus 172 lTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~ 251 (590)
T COG0514 172 LTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLR 251 (590)
T ss_pred EeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHH
Confidence 689999998887777664 54332 2222221 000 00011 1334444444444444443
Q ss_pred --------CCCCccc--------eeecCcccceec--ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHH
Q psy10677 59 --------GHYPKSV--------RFVLGTAGFLLS--AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKE 120 (317)
Q Consensus 59 --------lhg~~~q--------~F~~g~~~iLva--arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~ 120 (317)
.||+|+. +|.+++.+|+|| |=|+-| ++.|+..|++|++|..- +++..+.++.
T Consensus 252 ~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGI----dKpdVRfViH~~lP~s~------EsYyQE~GRA 321 (590)
T COG0514 252 KNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGI----DKPDVRFVIHYDLPGSI------ESYYQETGRA 321 (590)
T ss_pred HCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCcc----CCCCceEEEEecCCCCH------HHHHHHHhhc
Confidence 9999996 999999999999 555443 11677779999999754 6777666655
Q ss_pred CC
Q psy10677 121 HN 122 (317)
Q Consensus 121 ~~ 122 (317)
++
T Consensus 322 GR 323 (590)
T COG0514 322 GR 323 (590)
T ss_pred cC
Confidence 54
No 236
>KOG1123|consensus
Probab=92.88 E-value=0.071 Score=51.69 Aligned_cols=135 Identities=12% Similarity=0.028 Sum_probs=87.0
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhcccccc-ccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLN-FQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~-~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+|..=.+.|.|--.|+-. +.+ .|.|..++..+.+ +..+.-+ +.-|-|+|||+.=+-++. .+
T Consensus 283 DFRND~~npdl~idLKPs--t~i---------RpYQEksL~KMFGNgRARSGi----IVLPCGAGKtLVGvTAa~-ti-- 344 (776)
T KOG1123|consen 283 DFRNDNVNPDLDIDLKPS--TQI---------RPYQEKSLSKMFGNGRARSGI----IVLPCGAGKTLVGVTAAC-TI-- 344 (776)
T ss_pred ccccCCCCCCCCcCcCcc--ccc---------CchHHHHHHHHhCCCcccCce----EEEecCCCCceeeeeeee-ee--
Confidence 344444556655555533 344 7799999988875 3345777 889999999986543322 11
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECc-------------HHH
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATN-------------TSL 281 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP-------------~~l 281 (317)
.-.+||||.+---+.|-..+++.|+.--+-.++..+.+...... .-..++|+|= .++
T Consensus 345 --------kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~--~~~gvvvsTYsMva~t~kRS~eaek~ 414 (776)
T KOG1123|consen 345 --------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKERFP--SGAGVVVTTYSMVAYTGKRSHEAEKI 414 (776)
T ss_pred --------cccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccccCC--CCCcEEEEeeehhhhcccccHHHHHH
Confidence 34799999999999999999999987554455555443322111 1112566653 345
Q ss_pred HHHHhcCCCCCCCCchh
Q psy10677 282 GIYLQQNDAHSPCLSVW 298 (317)
Q Consensus 282 ~~~l~~~~~~~~~lde~ 298 (317)
.++|....-.+..|||.
T Consensus 415 m~~l~~~EWGllllDEV 431 (776)
T KOG1123|consen 415 MDFLRGREWGLLLLDEV 431 (776)
T ss_pred HHHHhcCeeeeEEeehh
Confidence 56777777777777864
No 237
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.85 E-value=0.13 Score=47.83 Aligned_cols=40 Identities=5% Similarity=0.033 Sum_probs=27.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
++-|...+-.+.. .+.+++ ++|+||||||.. +-.++..+.
T Consensus 130 ~~~~~~~L~~~v~-~~~nil----I~G~tGSGKTTl-l~aL~~~i~ 169 (323)
T PRK13833 130 TEAQASVIRSAID-SRLNIV----ISGGTGSGKTTL-ANAVIAEIV 169 (323)
T ss_pred CHHHHHHHHHHHH-cCCeEE----EECCCCCCHHHH-HHHHHHHHh
Confidence 4456655544442 678999 999999999954 345555554
No 238
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.80 E-value=0.53 Score=39.55 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=30.2
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+.||+|+|||..- +-++....+ .+..++++ .+.|-..++.+.+..+.
T Consensus 4 i~G~~G~GKT~l~-~~~~~~~~~-------~g~~v~~~-s~e~~~~~~~~~~~~~g 50 (187)
T cd01124 4 LSGGPGTGKTTFA-LQFLYAGLA-------RGEPGLYV-TLEESPEELIENAESLG 50 (187)
T ss_pred EEcCCCCCHHHHH-HHHHHHHHH-------CCCcEEEE-ECCCCHHHHHHHHHHcC
Confidence 8899999999643 222222222 25567776 45677778877777663
No 239
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.74 E-value=0.45 Score=46.08 Aligned_cols=85 Identities=18% Similarity=0.116 Sum_probs=44.6
Q ss_pred cCcCcccccceeccCCChhHHHHH-HHHHHHHHcCCCCCCCCCceEEEEc-Cc-HHHHHHHHHHHHHHhcCCCcEEEEEE
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYI-LPALYHILKMPKLEEGDGPIALVLA-PT-RELAQQIQAVISIFSRTMRIRHACLY 258 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~-lp~l~~l~~~~~~~~~~~~~alil~-Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~ 258 (317)
.|+.++ +.+|||+|||.... |........ .+-++.++. -+ |.-+ .++++.+...+++.+....
T Consensus 220 ~~~~i~----~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~~~~ 285 (424)
T PRK05703 220 QGGVVA----LVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYRIGA---VEQLKTYAKIMGIPVEVVY 285 (424)
T ss_pred CCcEEE----EECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccHHHH---HHHHHHHHHHhCCceEccC
Confidence 466777 89999999997543 222111111 123344433 22 3222 2455555555666655444
Q ss_pred CCCCHHHHHHHccC---cEEECcHH
Q psy10677 259 GGTSKMYQVILLRI---LTSATNTS 280 (317)
Q Consensus 259 gg~~~~~~~~~~~~---ilv~TP~~ 280 (317)
...+.......+.. |+|=|||+
T Consensus 286 ~~~~l~~~l~~~~~~DlVlIDt~G~ 310 (424)
T PRK05703 286 DPKELAKALEQLRDCDVILIDTAGR 310 (424)
T ss_pred CHHhHHHHHHHhCCCCEEEEeCCCC
Confidence 44333333333333 78999987
No 240
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=92.62 E-value=0.063 Score=55.00 Aligned_cols=66 Identities=5% Similarity=-0.105 Sum_probs=50.2
Q ss_pred CCCCccc------eeecCcccceec----ccccCCcCCCCCC-cccccCCCCCCCccccCCCCHHHHHHHHHHCCceeec
Q psy10677 59 GHYPKSV------RFVLGTAGFLLS----AVSFSLPFRDDKT-SVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 59 lhg~~~q------~F~~g~~~iLva----arg~~~~lr~~~~-d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
|||+-.. .|+.+...|+|| +||.||++..+.. ...+|++++.|... ..+.+..+++.+.+-.|
T Consensus 435 Lna~q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~------ri~~q~~GRtGRqG~~G 508 (745)
T TIGR00963 435 LNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESR------RIDNQLRGRSGRQGDPG 508 (745)
T ss_pred eeCChHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcH------HHHHHHhccccCCCCCc
Confidence 8888332 899999999999 9999997633322 34588999988765 67888888888887777
Q ss_pred CCC
Q psy10677 128 QNI 130 (317)
Q Consensus 128 ~~~ 130 (317)
...
T Consensus 509 ~s~ 511 (745)
T TIGR00963 509 SSR 511 (745)
T ss_pred ceE
Confidence 543
No 241
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.41 E-value=0.45 Score=45.36 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=58.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHHhcCCCcEEEEEECC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT-RELAQQIQAVISIFSRTMRIRHACLYGG 260 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg 260 (317)
.++-+. +.||||.|||.+..==.....+.. +..--++|=.=| |-=| .++++-+++-+++.+..++..
T Consensus 202 ~~~vi~----LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIGA---~EQLk~Ya~im~vp~~vv~~~ 269 (407)
T COG1419 202 QKRVIA----LVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIGA---VEQLKTYADIMGVPLEVVYSP 269 (407)
T ss_pred cCcEEE----EECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhhH---HHHHHHHHHHhCCceEEecCH
Confidence 477778 999999999976421111111111 122345555544 5444 456777788888888898888
Q ss_pred CCHHHHHHHccC---cEEECcHH
Q psy10677 261 TSKMYQVILLRI---LTSATNTS 280 (317)
Q Consensus 261 ~~~~~~~~~~~~---ilv~TP~~ 280 (317)
.+..+....+.+ |+|=|-||
T Consensus 270 ~el~~ai~~l~~~d~ILVDTaGr 292 (407)
T COG1419 270 KELAEAIEALRDCDVILVDTAGR 292 (407)
T ss_pred HHHHHHHHHhhcCCEEEEeCCCC
Confidence 888777777766 89999885
No 242
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.41 E-value=0.2 Score=46.15 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=26.4
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
++-|...+-.+.. .+.+++ ++|+||||||.. +-.++..+..
T Consensus 118 ~~~~~~~L~~~v~-~~~~il----I~G~tGSGKTTl-l~al~~~i~~ 158 (299)
T TIGR02782 118 TAAQRDVLREAVL-ARKNIL----VVGGTGSGKTTL-ANALLAEIAK 158 (299)
T ss_pred CHHHHHHHHHHHH-cCCeEE----EECCCCCCHHHH-HHHHHHHhhc
Confidence 3344444544442 677999 999999999954 3445555543
No 243
>PRK10536 hypothetical protein; Provisional
Probab=92.37 E-value=0.25 Score=44.37 Aligned_cols=41 Identities=5% Similarity=0.032 Sum_probs=34.4
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+..|...+-.+. +...++ +.||+|||||+..+.-.++.+..
T Consensus 61 n~~Q~~~l~al~--~~~lV~----i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 61 NEAQAHYLKAIE--SKQLIF----ATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred CHHHHHHHHHHh--cCCeEE----EECCCCCCHHHHHHHHHHHHHhc
Confidence 888999998888 778888 99999999999877777766643
No 244
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=92.26 E-value=0.32 Score=49.05 Aligned_cols=68 Identities=13% Similarity=0.042 Sum_probs=48.6
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHH--HHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFT--YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla--~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
...|+.|+-.++ ..+-++ ++|+.|||||.. .++-.+...... ...++.++.+||..-|..+.+.+..
T Consensus 147 ~~~Qk~A~~~al--~~~~~v----itGgpGTGKTt~v~~ll~~l~~~~~~-----~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALAL--KSNFSL----ITGGPGTGKTTTVARLLLALVKQSPK-----QGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHh--hCCeEE----EEcCCCCCHHHHHHHHHHHHHHhccc-----cCCCcEEEECCcHHHHHHHHHHHHh
Confidence 368999999999 888888 999999999974 333333322111 1136899999998888877766654
Q ss_pred H
Q psy10677 246 F 246 (317)
Q Consensus 246 l 246 (317)
.
T Consensus 216 ~ 216 (586)
T TIGR01447 216 A 216 (586)
T ss_pred h
Confidence 3
No 245
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.23 E-value=0.11 Score=49.32 Aligned_cols=25 Identities=12% Similarity=-0.156 Sum_probs=18.8
Q ss_pred CcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 185 KFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.++ +++|||||||.. +-.++.++..
T Consensus 151 lil----I~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 151 LGL----ICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred EEE----EECCCCCCHHHH-HHHHHHHHHh
Confidence 467 999999999954 3556777754
No 246
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.21 E-value=0.22 Score=47.67 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=45.6
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHH-HHHHHHHHHHHHhcCCCcE
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRE-LAQQIQAVISIFSRTMRIR 253 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptre-La~Qi~~~~~~l~~~~~~~ 253 (317)
..|..|||||.+..+-++..+...+ .+..++++.||.. |-.-++..+......+++.
T Consensus 6 ~~GgrgSGKS~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~ 63 (396)
T TIGR01547 6 AKGGRRSGKTFAIALKLVEKLAINK-----KQQNILAARKVQNSIRDSVFKDIENLLSIEGIN 63 (396)
T ss_pred EeCCCCcccHHHHHHHHHHHHHhcC-----CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCCh
Confidence 6799999999999999998888741 3578999999966 8888888888776655543
No 247
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=92.19 E-value=0.082 Score=54.63 Aligned_cols=71 Identities=7% Similarity=-0.048 Sum_probs=51.1
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCC-C-CcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDD-K-TSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~-~-~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
|||++.+ .++.|. |+|| +||.||.+... . ...-+|++++.|... .-+.+..+++.+.+
T Consensus 470 Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~------ri~~Ql~GRtGRqG 541 (796)
T PRK12906 470 LNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESR------RIDNQLRGRSGRQG 541 (796)
T ss_pred ecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcH------HHHHHHhhhhccCC
Confidence 8998887 566665 8888 99999966432 1 122388999988765 67899999999888
Q ss_pred eecCCCCCCcccccC
Q psy10677 125 LIGQNIPKPVKTLDE 139 (317)
Q Consensus 125 ~~g~~~~~~~~~f~~ 139 (317)
-.|... -+.|++|
T Consensus 542 ~~G~s~--~~~sleD 554 (796)
T PRK12906 542 DPGSSR--FYLSLED 554 (796)
T ss_pred CCcceE--EEEeccc
Confidence 888654 4445543
No 248
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.19 E-value=0.33 Score=50.30 Aligned_cols=71 Identities=8% Similarity=-0.043 Sum_probs=53.0
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.|++-|.+|+-. ...+++ +.|..|||||.+..-=+...+.... -..-+.|+++-|+.-|..+.+.+.+
T Consensus 4 ~Ln~~Q~~av~~----~~g~~l----V~AgaGSGKT~~l~~ria~Li~~~~----i~P~~IL~lTFT~kAA~em~~Rl~~ 71 (726)
T TIGR01073 4 HLNPEQREAVKT----TEGPLL----IMAGAGSGKTRVLTHRIAHLIAEKN----VAPWNILAITFTNKAAREMKERVEK 71 (726)
T ss_pred ccCHHHHHHHhC----CCCCEE----EEeCCCCCHHHHHHHHHHHHHHcCC----CCHHHeeeeeccHHHHHHHHHHHHH
Confidence 469999998854 335678 9999999999887666665554321 1123789999999999999988887
Q ss_pred Hhc
Q psy10677 246 FSR 248 (317)
Q Consensus 246 l~~ 248 (317)
+..
T Consensus 72 ~~~ 74 (726)
T TIGR01073 72 LLG 74 (726)
T ss_pred Hhc
Confidence 754
No 249
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.09 E-value=0.42 Score=45.66 Aligned_cols=90 Identities=11% Similarity=-0.054 Sum_probs=46.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHHhcCCCcEEEEEEC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA--PTRELAQQIQAVISIFSRTMRIRHACLYG 259 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~--PtreLa~Qi~~~~~~l~~~~~~~~~~~~g 259 (317)
.+..++ +.||||+|||.+..==+ .++.... ...+-.+.+++ +.|.-|. .+++.++..+++.+.....
T Consensus 173 ~~~vi~----lvGptGvGKTTT~aKLA-~~~~~~~---~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~~~~ 241 (388)
T PRK12723 173 KKRVFI----LVGPTGVGKTTTIAKLA-AIYGINS---DDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKAIES 241 (388)
T ss_pred CCeEEE----EECCCCCCHHHHHHHHH-HHHHhhh---ccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEeeCc
Confidence 345677 89999999998653211 2222110 01122333333 2244443 3366777766776544432
Q ss_pred CCCHHHHHHHccC---cEEECcHHHH
Q psy10677 260 GTSKMYQVILLRI---LTSATNTSLG 282 (317)
Q Consensus 260 g~~~~~~~~~~~~---ilv~TP~~l~ 282 (317)
............+ |+|=|+|+..
T Consensus 242 ~~~l~~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 242 FKDLKEEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCc
Confidence 2222222223333 7999999875
No 250
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.92 E-value=0.42 Score=45.76 Aligned_cols=85 Identities=6% Similarity=-0.050 Sum_probs=44.7
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcC--cHHHHHHHHHHHHHHhcCCCcEEEEEECC
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAP--TRELAQQIQAVISIFSRTMRIRHACLYGG 260 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~P--treLa~Qi~~~~~~l~~~~~~~~~~~~gg 260 (317)
++.+. ++||||+|||.....=.. .+.. .+.++.++.. -|.-+ .++++.+....++.+......
T Consensus 241 ~~vI~----LVGptGvGKTTTiaKLA~-~L~~-------~GkkVglI~aDt~RiaA---vEQLk~yae~lgipv~v~~d~ 305 (436)
T PRK11889 241 VQTIA----LIGPTGVGKTTTLAKMAW-QFHG-------KKKTVGFITTDHSRIGT---VQQLQDYVKTIGFEVIAVRDE 305 (436)
T ss_pred CcEEE----EECCCCCcHHHHHHHHHH-HHHH-------cCCcEEEEecCCcchHH---HHHHHHHhhhcCCcEEecCCH
Confidence 35667 899999999976543322 3332 1334444332 24222 233445555556665544332
Q ss_pred CCHHHHHHHcc-----C-cEEECcHHHH
Q psy10677 261 TSKMYQVILLR-----I-LTSATNTSLG 282 (317)
Q Consensus 261 ~~~~~~~~~~~-----~-ilv~TP~~l~ 282 (317)
.+.......++ + |+|=||||..
T Consensus 306 ~~L~~aL~~lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 306 AAMTRALTYFKEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCccccC
Confidence 23333332222 2 8999999854
No 251
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.81 E-value=0.54 Score=46.17 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=49.1
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.|.-+. ++||||+|||.+..-=.-....+. +..--++|-+=|-..+ ..++++.|++.+++.+.....+.
T Consensus 255 ~g~Vi~----LvGpnGvGKTTTiaKLA~~~~~~~-----G~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~~~~~~~ 323 (484)
T PRK06995 255 RGGVFA----LMGPTGVGKTTTTAKLAARCVMRH-----GASKVALLTTDSYRIG--GHEQLRIYGKILGVPVHAVKDAA 323 (484)
T ss_pred CCcEEE----EECCCCccHHHHHHHHHHHHHHhc-----CCCeEEEEeCCccchh--HHHHHHHHHHHhCCCeeccCCch
Confidence 344456 899999999987543222221221 1111234443332222 24566777776676665555554
Q ss_pred CHHHHHHHccC---cEEECcHHHH
Q psy10677 262 SKMYQVILLRI---LTSATNTSLG 282 (317)
Q Consensus 262 ~~~~~~~~~~~---ilv~TP~~l~ 282 (317)
+.......++. ++|-|+|+..
T Consensus 324 Dl~~aL~~L~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 324 DLRLALSELRNKHIVLIDTIGMSQ 347 (484)
T ss_pred hHHHHHHhccCCCeEEeCCCCcCh
Confidence 44444444443 7999999553
No 252
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=91.66 E-value=0.097 Score=54.98 Aligned_cols=92 Identities=3% Similarity=-0.063 Sum_probs=58.7
Q ss_pred CCCCccc------eeecCcccceec----ccccCCcCCCCCCccc--ccCCCCCCCccccCCCCHHHHHHHHHHCCceee
Q psy10677 59 GHYPKSV------RFVLGTAGFLLS----AVSFSLPFRDDKTSVV--TVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLI 126 (317)
Q Consensus 59 lhg~~~q------~F~~g~~~iLva----arg~~~~lr~~~~d~~--~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~ 126 (317)
||+...+ .|+.+..+|+|| +||.||++...-..+. ++++++.|... .-+.+..+++.+.+-.
T Consensus 628 Lnakq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~------Rid~Ql~GRtGRqGdp 701 (1025)
T PRK12900 628 LNAKQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESR------RIDRQLRGRAGRQGDP 701 (1025)
T ss_pred ecCCHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchH------HHHHHHhhhhhcCCCC
Confidence 7875333 999999999999 9999996653221111 23444444432 4578888888888888
Q ss_pred cCCCCCCcccccCC----CCChhhhcccCcCCCCCC
Q psy10677 127 GQNIPKPVKTLDET----NIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 127 g~~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~p 158 (317)
|... .+.|++|- .-++.+.+.+...|...+
T Consensus 702 GsS~--ffvSleD~Lmr~f~~~~i~~~~~~~~~~e~ 735 (1025)
T PRK12900 702 GESV--FYVSLEDELMRLFGSDRVISVMDRLGHEEG 735 (1025)
T ss_pred cceE--EEechhHHHHHhhCcHHHHHHHHHcCCCCC
Confidence 8764 45555442 123456666666676665
No 253
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.58 E-value=0.11 Score=49.08 Aligned_cols=27 Identities=7% Similarity=-0.044 Sum_probs=19.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
.+.-++ ++||||||||... -.++..+.
T Consensus 133 ~~glil----I~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVF----ITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEE----EECCCCCCHHHHH-HHHHHHHh
Confidence 445677 9999999999754 44566654
No 254
>PHA02558 uvsW UvsW helicase; Provisional
Probab=91.33 E-value=0.069 Score=52.87 Aligned_cols=55 Identities=7% Similarity=-0.100 Sum_probs=42.7
Q ss_pred CCCCccc--------eeecCcccceec-----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCcee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS-----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITL 125 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva-----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~ 125 (317)
+||+|++ .|++|+.++||| ++|+|+ .+.+.++.+..+... ...++..+|.++..-
T Consensus 374 i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Di------p~ld~vIl~~p~~s~------~~~~QriGR~~R~~~ 441 (501)
T PHA02558 374 VSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISI------KNLHHVIFAHPSKSK------IIVLQSIGRVLRKHG 441 (501)
T ss_pred EeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccc------ccccEEEEecCCcch------hhhhhhhhccccCCC
Confidence 9999997 788899999988 899999 788888866555432 456788777777543
No 255
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.16 E-value=0.62 Score=46.46 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=50.1
Q ss_pred hhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcC
Q psy10677 170 KESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT 249 (317)
Q Consensus 170 iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~ 249 (317)
||.+==..+-+..++-++ ++|..|||||.+.+--+...+...+. .-..+ .+||+.|.+-+..-|.+++=.|+..
T Consensus 213 IQkEQneIIR~ek~~ilV----VQGaAGSGKTtiALHRvAyLlY~~R~-~l~~k-~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 213 IQKEQNEIIRFEKNKILV----VQGAAGSGKTTIALHRVAYLLYGYRG-PLQAK-PVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred hhHhHHHHHhccCCCeEE----EecCCCCCchhHHHHHHHHHHhcccc-ccccC-ceEEEcCcHHHHHHHHHhchhhccC
Confidence 444433344433455566 78999999998876665555544321 11223 3999999999999999999888765
No 256
>KOG4150|consensus
Probab=91.05 E-value=0.086 Score=51.87 Aligned_cols=66 Identities=5% Similarity=-0.208 Sum_probs=55.1
Q ss_pred CCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 164 NKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 164 ~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
.+.+..+|..++..+- +|++++ +...|.+||.++|.+.....+...+ .-..+++.||.|+++...+
T Consensus 284 ~E~~~~~~~~~~~~~~--~G~~~~----~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 284 GESGIAISLELLKFAS--EGRADG----GNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSK 349 (1034)
T ss_pred ccchhhhhHHHHhhhh--hccccc----ccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCC
Confidence 3444889999999999 999999 9999999999999999888776653 4567888999999976543
No 257
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=91.00 E-value=0.41 Score=49.58 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=45.8
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
+++-|.+|+-.+. ..+-++ ++|+.|||||... -.++..+... +....+++++||..-|..+.+
T Consensus 324 l~~~Q~~Ai~~~~--~~~~~i----itGgpGTGKTt~l-~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 324 LSEEQKQALDTAI--QHKVVI----LTGGPGTGKTTIT-RAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCHHHHHHHHHHH--hCCeEE----EECCCCCCHHHHH-HHHHHHHHHc-----CCCceEEEEeCchHHHHHHHH
Confidence 4999999999998 888888 9999999999643 2333333332 111568888999887777664
No 258
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.99 E-value=0.32 Score=41.26 Aligned_cols=47 Identities=6% Similarity=0.147 Sum_probs=30.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
.+++++ +.|++|+|||.... .+...+... +..+ ..+++.+|...+..
T Consensus 46 ~~~~l~----l~G~~G~GKThLa~-ai~~~~~~~-------g~~v-~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 46 NGENLI----LYGPPGTGKTHLAV-AIANEAIRK-------GYSV-LFITASDLLDELKQ 92 (178)
T ss_dssp C--EEE----EEESTTSSHHHHHH-HHHHHHHHT-------T--E-EEEEHHHHHHHHHC
T ss_pred cCeEEE----EEhhHhHHHHHHHH-HHHHHhccC-------Ccce-eEeecCceeccccc
Confidence 788899 99999999997643 344445432 3344 44577888877764
No 259
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=90.95 E-value=0.42 Score=50.92 Aligned_cols=61 Identities=7% Similarity=-0.123 Sum_probs=45.4
Q ss_pred CCCchhhhhccccccccCcC-cccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKK-FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~d-vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.|++-|.+|+..++ ++.+ ++ ++|+.|+|||.. +-.+...+.. .|..++.++||---|..+.
T Consensus 346 ~Ls~eQr~Av~~il--~s~~v~v----v~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 346 VLSGEQADALAHVT--DGRDLGV----VVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLE 407 (988)
T ss_pred CCCHHHHHHHHHHh--cCCCeEE----EEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHh
Confidence 35999999999999 7766 45 889999999975 3334333332 3678999999987776664
No 260
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.93 E-value=0.54 Score=46.64 Aligned_cols=87 Identities=10% Similarity=-0.067 Sum_probs=43.4
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHHhcCCCcEEEEEEC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA--PTRELAQQIQAVISIFSRTMRIRHACLYG 259 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~--PtreLa~Qi~~~~~~l~~~~~~~~~~~~g 259 (317)
.|.-+. ++||||+|||....-=... +... ..+-++.++. +.|.-+ .++++.+...+++.+.....
T Consensus 349 ~G~vIa----LVGPtGvGKTTtaakLAa~-la~~-----~~gkkVaLIdtDtyRigA---~EQLk~ya~iLgv~v~~a~d 415 (559)
T PRK12727 349 RGGVIA----LVGPTGAGKTTTIAKLAQR-FAAQ-----HAPRDVALVTTDTQRVGG---REQLHSYGRQLGIAVHEADS 415 (559)
T ss_pred CCCEEE----EECCCCCCHHHHHHHHHHH-HHHh-----cCCCceEEEecccccccH---HHHHHHhhcccCceeEecCc
Confidence 677788 9999999999765322211 2111 1111232222 224333 23445555555655544433
Q ss_pred CCCHHHHHHHccC---cEEECcHHH
Q psy10677 260 GTSKMYQVILLRI---LTSATNTSL 281 (317)
Q Consensus 260 g~~~~~~~~~~~~---ilv~TP~~l 281 (317)
+.........+.+ |||=|||+.
T Consensus 416 ~~~L~~aL~~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 416 AESLLDLLERLRDYKLVLIDTAGMG 440 (559)
T ss_pred HHHHHHHHHHhccCCEEEecCCCcc
Confidence 3333333333333 788888864
No 261
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=90.85 E-value=1.7 Score=34.93 Aligned_cols=13 Identities=8% Similarity=-0.263 Sum_probs=11.2
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.|++|+|||...
T Consensus 4 i~G~~G~GKT~l~ 16 (165)
T cd01120 4 VFGPTGSGKTTLA 16 (165)
T ss_pred EeCCCCCCHHHHH
Confidence 7899999999644
No 262
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=90.83 E-value=0.15 Score=48.67 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=35.4
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
++|+||||||.++++|-+... ...++|.=|--|+........++.
T Consensus 4 v~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 4 VFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred EecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc
Confidence 899999999999999977431 246888888899987776665554
No 263
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=90.70 E-value=0.49 Score=42.55 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=43.8
Q ss_pred Cchhhhhcccccc-----ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN-----FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 168 t~iQ~~~ip~~l~-----~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
..++..++-.+.. .++.+++ +.|++|+|||.-.. .+...+.+ .| ..++++++.+|+.++...
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~~~nl~----l~G~~G~GKThLa~-Ai~~~l~~-------~g-~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 85 PGIDKKALEDLASLVEFFERGENLV----LLGPPGVGKTHLAI-AIGNELLK-------AG-ISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cchhHHHHHHHHHHHHHhccCCcEE----EECCCCCcHHHHHH-HHHHHHHH-------cC-CeEEEEEHHHHHHHHHHH
Confidence 5566665544431 2677999 99999999996543 34444443 13 455567899999999886
Q ss_pred HHH
Q psy10677 243 ISI 245 (317)
Q Consensus 243 ~~~ 245 (317)
...
T Consensus 152 ~~~ 154 (254)
T COG1484 152 FDE 154 (254)
T ss_pred Hhc
Confidence 654
No 264
>PF12846 AAA_10: AAA-like domain
Probab=90.63 E-value=0.7 Score=41.66 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=31.3
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQ 237 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~ 237 (317)
.+++ +.|+||||||.+.. .++..+.. .++..+|+=|..+...
T Consensus 2 ~h~~----i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTL----ILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEE----EECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 3556 99999999997766 66666654 3678888888777655
No 265
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.58 E-value=0.17 Score=49.51 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=37.7
Q ss_pred CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 185 KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++ +.||||||||..|++|.+.. . .+ -++|.=|-.||+.......++.+
T Consensus 46 h~l----vig~tgSGKt~~~viP~ll~--~-------~~-s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 46 HVL----VIGPTGSGKTTSFVIPNLLN--Y-------PG-SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred EEE----EEeCCCCCccceeeHhHHHh--c-------cC-CEEEEECCCcHHHHHHHHHHHCC
Confidence 578 99999999999999998732 1 12 67788888898877776666554
No 266
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.36 E-value=0.2 Score=50.64 Aligned_cols=49 Identities=12% Similarity=0.001 Sum_probs=39.6
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
..++ +.||||||||..|++|-|... +.-+||+=|--|+........++.
T Consensus 159 ~hvL----viapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHAL----LFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEE----EEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 4577 999999999999999998653 235888889999998877766664
No 267
>KOG0389|consensus
Probab=90.36 E-value=0.71 Score=47.26 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=69.4
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGG 260 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg 260 (317)
.+-+-| ..-+-|=|||. =.++.+..|.... ..|| -||+||+.-| .++++.|.+.. .+++-..||.
T Consensus 417 ~~l~gI----LADEMGLGKTi-QvIaFlayLkq~g----~~gp-HLVVvPsSTl----eNWlrEf~kwCPsl~Ve~YyGS 482 (941)
T KOG0389|consen 417 KKLNGI----LADEMGLGKTI-QVIAFLAYLKQIG----NPGP-HLVVVPSSTL----ENWLREFAKWCPSLKVEPYYGS 482 (941)
T ss_pred ccccce----ehhhccCcchh-HHHHHHHHHHHcC----CCCC-cEEEecchhH----HHHHHHHHHhCCceEEEeccCc
Confidence 444556 67789999995 3455566666542 2344 5777896554 44455444443 5899999999
Q ss_pred CCHHHHHHHc-cC------cEEECcHHH------HHHHhcCCCCCCCCchhHHHhh
Q psy10677 261 TSKMYQVILL-RI------LTSATNTSL------GIYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 261 ~~~~~~~~~~-~~------ilv~TP~~l------~~~l~~~~~~~~~lde~d~l~~ 303 (317)
.....+.... .. ++++|=.-. -.++++.++++.+.||++-|=+
T Consensus 483 q~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN 538 (941)
T KOG0389|consen 483 QDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKN 538 (941)
T ss_pred HHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhc
Confidence 8766555433 22 566664333 2577888999999999886654
No 268
>KOG0384|consensus
Probab=89.98 E-value=0.98 Score=48.36 Aligned_cols=167 Identities=16% Similarity=0.122 Sum_probs=98.4
Q ss_pred ccCCCCHHHHHHHHHHCCce---eecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhcccccc-
Q psy10677 105 HLQGKTKEEIDSFRKEHNIT---LIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLN- 180 (317)
Q Consensus 105 ~i~~~~~~~i~~~~~~~~i~---~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~- 180 (317)
.+..+-+.+++.|....+-. -.|...-++-..|..+...|.-... ... ...|...+--++.
T Consensus 321 ~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~g------~~L---------RdyQLeGlNWl~~~ 385 (1373)
T KOG0384|consen 321 DIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKGG------NEL---------RDYQLEGLNWLLYS 385 (1373)
T ss_pred hhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCcccccc------chh---------hhhhcccchhHHHH
Confidence 34444567777777665321 1233333333456666555544443 233 6667766654432
Q ss_pred -ccCcCcccccceeccCCChhHH---HHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEE
Q psy10677 181 -FQAKKFISVLQKKAEVQSRSVF---TYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHAC 256 (317)
Q Consensus 181 -~~g~dvi~~~~~~a~tGsGKTl---a~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~ 256 (317)
..+.++| ..-+-|=|||+ +|+--+.+... ..||. ||++|..-+ ..+-+.|...+++++++
T Consensus 386 W~~~~n~I----LADEmgLgktvqti~fl~~l~~~~~-------~~gpf-lvvvplst~----~~W~~ef~~w~~mn~i~ 449 (1373)
T KOG0384|consen 386 WYKRNNCI----LADEMGLGKTVQTITFLSYLFHSLQ-------IHGPF-LVVVPLSTI----TAWEREFETWTDMNVIV 449 (1373)
T ss_pred HHhcccce----ehhhcCCCcchHHHHHHHHHHHhhh-------ccCCe-EEEeehhhh----HHHHHHHHHHhhhceee
Confidence 3788998 88899999986 45444443332 23554 556675433 33444444445788899
Q ss_pred EECCCCHHHHHHHccC------------cEEECcHHHH---HHHhcCCCCCCCCchhHHHh
Q psy10677 257 LYGGTSKMYQVILLRI------------LTSATNTSLG---IYLQQNDAHSPCLSVWRRLQ 302 (317)
Q Consensus 257 ~~gg~~~~~~~~~~~~------------ilv~TP~~l~---~~l~~~~~~~~~lde~d~l~ 302 (317)
..|.....+.+....- ++++|=..++ ..|..=.-.+..+|||+||=
T Consensus 450 y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 450 YHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred eecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcC
Confidence 9998876655543211 5888876664 34444455678899999875
No 269
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.95 E-value=0.72 Score=39.73 Aligned_cols=80 Identities=10% Similarity=-0.003 Sum_probs=41.2
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc-CcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHH----
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA-PTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ---- 266 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~-PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~---- 266 (317)
+.||||+|||.+.. -+..++... +.. -++|=+ ..|.=| .++++.+++.+++.+....-..+..+.
T Consensus 6 lvGptGvGKTTt~a-KLAa~~~~~-----~~~-v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~ 75 (196)
T PF00448_consen 6 LVGPTGVGKTTTIA-KLAARLKLK-----GKK-VALISADTYRIGA---VEQLKTYAEILGVPFYVARTESDPAEIAREA 75 (196)
T ss_dssp EEESTTSSHHHHHH-HHHHHHHHT-----T---EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSCHHHHHHHH
T ss_pred EECCCCCchHhHHH-HHHHHHhhc-----ccc-ceeecCCCCCccH---HHHHHHHHHHhccccchhhcchhhHHHHHHH
Confidence 78999999997642 222333321 112 223322 335444 455667777667776655444332221
Q ss_pred HHHc-----cCcEEECcHHH
Q psy10677 267 VILL-----RILTSATNTSL 281 (317)
Q Consensus 267 ~~~~-----~~ilv~TP~~l 281 (317)
.... .-|+|=||||.
T Consensus 76 l~~~~~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 76 LEKFRKKGYDLVLIDTAGRS 95 (196)
T ss_dssp HHHHHHTTSSEEEEEE-SSS
T ss_pred HHHHhhcCCCEEEEecCCcc
Confidence 1111 12899999865
No 270
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.90 E-value=0.22 Score=46.77 Aligned_cols=26 Identities=8% Similarity=-0.093 Sum_probs=19.8
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
.+.+++ ++|+||||||.. +-.++..+
T Consensus 161 ~~~nil----I~G~tGSGKTTl-l~aLl~~i 186 (344)
T PRK13851 161 GRLTML----LCGPTGSGKTTM-SKTLISAI 186 (344)
T ss_pred cCCeEE----EECCCCccHHHH-HHHHHccc
Confidence 788999 999999999953 34445444
No 271
>KOG0920|consensus
Probab=89.70 E-value=0.78 Score=48.18 Aligned_cols=114 Identities=11% Similarity=-0.076 Sum_probs=68.4
Q ss_pred hhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH-hcC
Q psy10677 171 ESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF-SRT 249 (317)
Q Consensus 171 Q~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~ 249 (317)
+.+.+..+. +..-++ ++|.||+|||.=----+|+.....+ .....++=-|-|--|..+++.+..= ...
T Consensus 178 r~~Il~~i~--~~qVvv----IsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~ 246 (924)
T KOG0920|consen 178 RDTILDAIE--ENQVVV----ISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGES 246 (924)
T ss_pred HHHHHHHHH--hCceEE----EeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccc
Confidence 344445555 666677 9999999999865444555544432 3344555558888888887766543 233
Q ss_pred CCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC----CCCCCCCchh
Q psy10677 250 MRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN----DAHSPCLSVW 298 (317)
Q Consensus 250 ~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~----~~~~~~lde~ 298 (317)
.|-.+..-.+..+... ....++.||-|.|+..+..+ .+.-.++||.
T Consensus 247 ~g~~VGYqvrl~~~~s---~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEV 296 (924)
T KOG0920|consen 247 LGEEVGYQVRLESKRS---RETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEV 296 (924)
T ss_pred cCCeeeEEEeeecccC---CceeEEEecHHHHHHHhccCcccccCceeeeeeE
Confidence 3433333333222211 11348999999999999874 3444567765
No 272
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=89.65 E-value=0.64 Score=48.36 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=44.8
Q ss_pred CCCchhhhhccccccccC-cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQA-KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
.+++-|..|+-.++ .+ +-++ ++|+.|+|||.. +-.+..+... .+..++.++||.--|..+.+
T Consensus 352 ~Ls~~Q~~Av~~i~--~s~~~~i----l~G~aGTGKTtl--l~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~ 414 (744)
T TIGR02768 352 RLSEEQYEAVRHVT--GSGDIAV----VVGRAGTGKSTM--LKAAREAWEA------AGYRVIGAALSGKAAEGLQA 414 (744)
T ss_pred CCCHHHHHHHHHHh--cCCCEEE----EEecCCCCHHHH--HHHHHHHHHh------CCCeEEEEeCcHHHHHHHHh
Confidence 46999999999888 54 4556 899999999854 3333333322 36789999999887776654
No 273
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.08 E-value=0.74 Score=47.64 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=41.6
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc-HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT-RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL 270 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~ 270 (317)
+++|||+|||.+..-=.-...... +...-++|-+-| |.=+ .++++.+.+.+++.+..+.......+....+
T Consensus 190 lVGpnGvGKTTTiaKLA~~~~~~~-----G~kkV~lit~Dt~RigA---~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~ 261 (767)
T PRK14723 190 LVGPTGVGKTTTTAKLAARCVARE-----GADQLALLTTDSFRIGA---LEQLRIYGRILGVPVHAVKDAADLRFALAAL 261 (767)
T ss_pred EECCCCCcHHHHHHHHHhhHHHHc-----CCCeEEEecCcccchHH---HHHHHHHHHhCCCCccccCCHHHHHHHHHHh
Confidence 899999999876543222221111 111223333333 2112 4566777776676655443222222222233
Q ss_pred cC---cEEECcHHH
Q psy10677 271 RI---LTSATNTSL 281 (317)
Q Consensus 271 ~~---ilv~TP~~l 281 (317)
+. |+|=||||.
T Consensus 262 ~~~D~VLIDTAGRs 275 (767)
T PRK14723 262 GDKHLVLIDTVGMS 275 (767)
T ss_pred cCCCEEEEeCCCCC
Confidence 32 799999964
No 274
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=0.69 Score=43.90 Aligned_cols=26 Identities=8% Similarity=-0.127 Sum_probs=18.8
Q ss_pred ccccccccCcCcccccceeccCCChhHHHH
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.+.+....|++ +.|+||+|||++-
T Consensus 34 ~~~~~~~~p~n~~----iyG~~GTGKT~~~ 59 (366)
T COG1474 34 APALRGERPSNII----IYGPTGTGKTATV 59 (366)
T ss_pred HHHhcCCCCccEE----EECCCCCCHhHHH
Confidence 3455534445688 9999999999764
No 275
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.02 E-value=0.23 Score=51.02 Aligned_cols=88 Identities=9% Similarity=-0.032 Sum_probs=59.3
Q ss_pred CCCCccc--------eeecC-cccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCcee
Q psy10677 59 GHYPKSV--------RFVLG-TAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITL 125 (317)
Q Consensus 59 lhg~~~q--------~F~~g-~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~ 125 (317)
|||++++ +|++| .+++||+ ++|+|+ .+.+.++++..|... ...++++.+|..+..-
T Consensus 521 I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDl------P~a~vvI~~s~~~gS-----~~q~iQRlGRilR~~~ 589 (732)
T TIGR00603 521 IYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDL------PEANVLIQISSHYGS-----RRQEAQRLGRILRAKK 589 (732)
T ss_pred EECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCC------CCCCEEEEeCCCCCC-----HHHHHHHhcccccCCC
Confidence 8999998 99875 7899988 889999 899999888866321 3688999998888765
Q ss_pred ecCC--CCCCcccc-----cCCCCChhhhcccCcCCCCC
Q psy10677 126 IGQN--IPKPVKTL-----DETNIPSYILGPMKPKTTNN 157 (317)
Q Consensus 126 ~g~~--~~~~~~~f-----~~~~l~~~l~~~l~~~g~~~ 157 (317)
.|.. ..--+-++ .|+.++..=++.|.+.||..
T Consensus 590 ~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qGY~~ 628 (732)
T TIGR00603 590 GSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQGYSF 628 (732)
T ss_pred CCccccccceEEEEecCCchHHHHHHHHHHHHHHCCCee
Confidence 5442 01011112 22345555555666667653
No 276
>PRK13764 ATPase; Provisional
Probab=88.86 E-value=0.45 Score=47.95 Aligned_cols=28 Identities=4% Similarity=-0.040 Sum_probs=21.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+++++ ++|+||||||. ++-.++.++..
T Consensus 256 ~~~~IL----IsG~TGSGKTT-ll~AL~~~i~~ 283 (602)
T PRK13764 256 RAEGIL----IAGAPGAGKST-FAQALAEFYAD 283 (602)
T ss_pred cCCEEE----EECCCCCCHHH-HHHHHHHHHhh
Confidence 567899 99999999996 44566777654
No 277
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=88.73 E-value=0.19 Score=50.55 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=37.5
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHH
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKE 120 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~ 120 (317)
+||.|+. +|++|+.+|||| --|+|+ .+.+..+.++ .+...-++.|.+|-+
T Consensus 513 ~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdV------PnATvMVIe~------AERFGLaQLHQLRGR 574 (677)
T COG1200 513 VHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDV------PNATVMVIEN------AERFGLAQLHQLRGR 574 (677)
T ss_pred EecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccC------CCCeEEEEec------hhhhhHHHHHHhccc
Confidence 9999995 999999999999 789998 6666554332 233446788888733
No 278
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=88.68 E-value=0.17 Score=35.80 Aligned_cols=38 Identities=26% Similarity=0.194 Sum_probs=30.0
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPS 102 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~ 102 (317)
+||++++ .|++|...+|++ +.|+|+ .+...+..++.+.
T Consensus 17 ~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~------~~~~~vi~~~~~~ 66 (82)
T smart00490 17 LHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDL------PGVDLVIIYDLPW 66 (82)
T ss_pred EECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcCh------hcCCEEEEeCCCC
Confidence 7887776 799999999998 899999 6667776666543
No 279
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=88.53 E-value=0.47 Score=45.72 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=34.3
Q ss_pred ccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI 239 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi 239 (317)
+|.-. ..++++ +.|+||||||.. +-.++..+... +..++|+=|..|+....
T Consensus 36 ~~~~~--~~~h~~----i~g~tGsGKt~~-i~~l~~~~~~~-------~~~~vi~D~kg~~~~~~ 86 (410)
T cd01127 36 FPKDA--EEAHTM----IIGTTGTGKTTQ-IRELLASIRAR-------GDRAIIYDPNGGFVSKF 86 (410)
T ss_pred CCcch--hhccEE----EEcCCCCCHHHH-HHHHHHHHHhc-------CCCEEEEeCCcchhHhh
Confidence 44555 667888 999999999975 44555555542 34677777777665433
No 280
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=88.42 E-value=0.33 Score=49.67 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=36.4
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
..+++ ++||||||||.+|++|-+... .-.++|+=|--|+........++
T Consensus 139 ~~hvl----viApTgSGKgvg~VIPnLL~~----------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 139 QPHSL----VVAPTRAGKGVGVVIPTLLTF----------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred CceEE----EEecCCCCceeeehHhHHhcC----------CCCEEEEeCCchHHHHHHHHHHh
Confidence 34788 999999999999999987542 12577777877777666555544
No 281
>PRK13766 Hef nuclease; Provisional
Probab=88.38 E-value=0.24 Score=51.74 Aligned_cols=73 Identities=16% Similarity=0.090 Sum_probs=53.0
Q ss_pred EEEEEEccCCCchhhhhhhcc--------CCCC--------ccc--------eeecCcccceec----ccccCCcCCCCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------GHYP--------KSV--------RFVLGTAGFLLS----AVSFSLPFRDDK 89 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------lhg~--------~~q--------~F~~g~~~iLva----arg~~~~lr~~~ 89 (317)
....++|..++-.+.|.+.|. +||. |+| +|++|+.++||| ++|+|+
T Consensus 366 ~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi------ 439 (773)
T PRK13766 366 SRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDI------ 439 (773)
T ss_pred CeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCc------
Confidence 345667776666666666663 5654 776 899999999999 899999
Q ss_pred CcccccCCCCCCCccccCCCCHHHHHHHHHHCC
Q psy10677 90 TSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHN 122 (317)
Q Consensus 90 ~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~ 122 (317)
.+...+++|+.+... ...+++.++..+
T Consensus 440 ~~~~~VI~yd~~~s~------~r~iQR~GR~gR 466 (773)
T PRK13766 440 PSVDLVIFYEPVPSE------IRSIQRKGRTGR 466 (773)
T ss_pred ccCCEEEEeCCCCCH------HHHHHHhcccCc
Confidence 788899999876533 356676655544
No 282
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=88.23 E-value=0.79 Score=43.82 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=33.7
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
..++++ +.|.||||||. ++-+++..+... +-+++|.=|..+.....++
T Consensus 14 e~~~~l----i~G~~GsGKT~-~i~~ll~~~~~~-------g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 14 ENRHIL----IIGATGSGKTQ-AIRHLLDQIRAR-------GDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp GGG-EE----EEE-TTSSHHH-HHHHHHHHHHHT-------T-EEEEEEETTHHHHHH--
T ss_pred hhCcEE----EECCCCCCHHH-HHHHHHHHHHHc-------CCEEEEEECCchHHHHhcC
Confidence 778899 99999999996 556888887664 4578888888777655554
No 283
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.09 E-value=1.1 Score=42.76 Aligned_cols=85 Identities=9% Similarity=-0.009 Sum_probs=44.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcC-c-HHHHHHHHHHHHHHhcCCCcEEEEEEC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAP-T-RELAQQIQAVISIFSRTMRIRHACLYG 259 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~P-t-reLa~Qi~~~~~~l~~~~~~~~~~~~g 259 (317)
.++-+. +++|+|+|||....--.. .+... +.++.+++- | |.=| .++++.+.+.+++.+.....
T Consensus 205 ~~~ii~----lvGptGvGKTTt~akLA~-~l~~~-------g~~V~lItaDtyR~gA---veQLk~yae~lgvpv~~~~d 269 (407)
T PRK12726 205 NHRIIS----LIGQTGVGKTTTLVKLGW-QLLKQ-------NRTVGFITTDTFRSGA---VEQFQGYADKLDVELIVATS 269 (407)
T ss_pred CCeEEE----EECCCCCCHHHHHHHHHH-HHHHc-------CCeEEEEeCCccCccH---HHHHHHHhhcCCCCEEecCC
Confidence 566677 999999999975433222 23222 233433332 2 3222 34566677766765543321
Q ss_pred CCCHHHHHHHc------cCcEEECcHHH
Q psy10677 260 GTSKMYQVILL------RILTSATNTSL 281 (317)
Q Consensus 260 g~~~~~~~~~~------~~ilv~TP~~l 281 (317)
..+.......+ ..|+|=|||+.
T Consensus 270 p~dL~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 270 PAELEEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 11111111222 12899999994
No 284
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.04 E-value=0.27 Score=41.84 Aligned_cols=32 Identities=6% Similarity=0.020 Sum_probs=24.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
++-|...+...+. .|..++ +++|||||||...
T Consensus 11 ~~~~~~~l~~~v~-~g~~i~----I~G~tGSGKTTll 42 (186)
T cd01130 11 SPLQAAYLWLAVE-ARKNIL----ISGGTGSGKTTLL 42 (186)
T ss_pred CHHHHHHHHHHHh-CCCEEE----EECCCCCCHHHHH
Confidence 5556666655553 788999 9999999999754
No 285
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.94 E-value=0.24 Score=45.64 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+-.|++ ..+|||||||+-.
T Consensus 96 ~KSNIL----LiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNIL----LIGPTGSGKTLLA 114 (408)
T ss_pred eeccEE----EECCCCCcHHHHH
Confidence 556888 9999999999743
No 286
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=87.93 E-value=0.87 Score=40.31 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=36.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|.-++ +.|++|||||.-.+--+.+.+. .+-.+++++ +.|-..|+.+.+..+.
T Consensus 20 ~gs~~l----I~G~pGsGKT~la~~~l~~~~~--------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVL----LSGGPGTGKSIFSQQFLWNGLQ--------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEE----EEcCCCCCHHHHHHHHHHHHHH--------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 566777 9999999999744333333332 245677776 6677778888777664
No 287
>KOG0391|consensus
Probab=87.78 E-value=2 Score=46.08 Aligned_cols=111 Identities=9% Similarity=0.082 Sum_probs=71.4
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHH-HHHc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ-VILL 270 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~-~~~~ 270 (317)
+.-+-|-|||.- .|.+|.|+-+.+ ++-.--||++||..+. .-.-++++|+. ++++...||....... ..-+
T Consensus 639 LADEmGLGKTIQ-tISllAhLACee----gnWGPHLIVVpTsviL-nWEMElKRwcP--glKILTYyGs~kErkeKRqgW 710 (1958)
T KOG0391|consen 639 LADEMGLGKTIQ-TISLLAHLACEE----GNWGPHLIVVPTSVIL-NWEMELKRWCP--GLKILTYYGSHKERKEKRQGW 710 (1958)
T ss_pred ehhhhcccchhH-HHHHHHHHHhcc----cCCCCceEEeechhhh-hhhHHHhhhCC--cceEeeecCCHHHHHHHhhcc
Confidence 667889999964 567888887753 3333457778997654 34566788887 6899999987553322 2223
Q ss_pred cC-----cEEECcHHHH---HHHhcCCCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 271 RI-----LTSATNTSLG---IYLQQNDAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 271 ~~-----ilv~TP~~l~---~~l~~~~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
.+ ++|+.=..+. ..++++.-.+++||||.++-. |....-|
T Consensus 711 ~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKn---fksqrWQ 758 (1958)
T KOG0391|consen 711 AKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKN---FKSQRWQ 758 (1958)
T ss_pred cCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcc---hhHHHHH
Confidence 22 4554443332 356778889999999987543 5444433
No 288
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=87.59 E-value=1.5 Score=39.34 Aligned_cols=56 Identities=7% Similarity=-0.075 Sum_probs=31.2
Q ss_pred cccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
--+. .|.-++ +.|++|+|||.- ++-++.++... .+-.++++. +.+-..++...+..
T Consensus 25 gG~~--~g~~~~----i~g~~G~GKT~l-~~~~~~~~~~~------~g~~vl~iS-~E~~~~~~~~r~~~ 80 (271)
T cd01122 25 KGLR--KGELII----LTAGTGVGKTTF-LREYALDLITQ------HGVRVGTIS-LEEPVVRTARRLLG 80 (271)
T ss_pred EEEc--CCcEEE----EEcCCCCCHHHH-HHHHHHHHHHh------cCceEEEEE-cccCHHHHHHHHHH
Confidence 3445 777788 999999999953 33333333221 245666665 33333444444433
No 289
>PRK12377 putative replication protein; Provisional
Probab=87.53 E-value=1.2 Score=39.87 Aligned_cols=47 Identities=6% Similarity=0.133 Sum_probs=30.4
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
..+++ +.|++|+|||... ..+...+... +.. ++.++..+|..++...
T Consensus 101 ~~~l~----l~G~~GtGKThLa-~AIa~~l~~~-------g~~-v~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFV----FSGKPGTGKNHLA-AAIGNRLLAK-------GRS-VIVVTVPDVMSRLHES 147 (248)
T ss_pred CCeEE----EECCCCCCHHHHH-HHHHHHHHHc-------CCC-eEEEEHHHHHHHHHHH
Confidence 35678 9999999999532 3344455432 333 3555777888877654
No 290
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=87.51 E-value=0.48 Score=44.38 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=21.5
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+.+++ ++|+||||||. ++-.++..+..
T Consensus 159 ~~~nil----i~G~tgSGKTT-ll~aL~~~ip~ 186 (332)
T PRK13900 159 SKKNII----ISGGTSTGKTT-FTNAALREIPA 186 (332)
T ss_pred cCCcEE----EECCCCCCHHH-HHHHHHhhCCC
Confidence 788999 99999999995 44555665543
No 291
>KOG0387|consensus
Probab=87.48 E-value=1.2 Score=45.70 Aligned_cols=132 Identities=16% Similarity=-0.009 Sum_probs=73.1
Q ss_pred CCCCCCcCCCCCCCCchhhhhcccccc--ccCcCcccccceeccCCChhHH---HHHHHHHHHHHcCCCCCCCCCceEEE
Q psy10677 154 TTNNENNHNKNKKCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVF---TYILPALYHILKMPKLEEGDGPIALV 228 (317)
Q Consensus 154 g~~~p~~~~~~~~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTl---a~~lp~l~~l~~~~~~~~~~~~~ali 228 (317)
||..| ..-..+|.+.|..++.-+.. .++..-| +.-.-|=|||. +|+-. |++-.+ -.-.|||
T Consensus 195 ~~~vP--g~I~~~Lf~yQreGV~WL~~L~~q~~GGI----LgDeMGLGKTIQiisFLaa-L~~S~k-------~~~paLI 260 (923)
T KOG0387|consen 195 GFKVP--GFIWSKLFPYQREGVQWLWELYCQRAGGI----LGDEMGLGKTIQIISFLAA-LHHSGK-------LTKPALI 260 (923)
T ss_pred ccccc--HHHHHHhhHHHHHHHHHHHHHHhccCCCe----ecccccCccchhHHHHHHH-Hhhccc-------ccCceEE
Confidence 45555 22234778899988866653 1344445 56688999996 34333 332211 1247999
Q ss_pred EcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCH------------HHHHHHccC----cEEECcHHHHH---HHhcCC
Q psy10677 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK------------MYQVILLRI----LTSATNTSLGI---YLQQND 289 (317)
Q Consensus 229 l~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~------------~~~~~~~~~----ilv~TP~~l~~---~l~~~~ 289 (317)
+||.- +..|-.+++..|.. .+++..++|..+. +.+...... |+|+|=..+-- -+....
T Consensus 261 VCP~T-ii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~ 337 (923)
T KOG0387|consen 261 VCPAT-IIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGIL 337 (923)
T ss_pred EccHH-HHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCccccccc
Confidence 99964 44455555665554 5788888875552 111111111 45555433321 133345
Q ss_pred CCCCCCchhHHHh
Q psy10677 290 AHSPCLSVWRRLQ 302 (317)
Q Consensus 290 ~~~~~lde~d~l~ 302 (317)
-.+.+|||.+++-
T Consensus 338 W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 338 WDYVILDEGHRIR 350 (923)
T ss_pred ccEEEecCccccc
Confidence 5678888877654
No 292
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=87.34 E-value=0.63 Score=41.44 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=19.5
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
-.++ ++|++||||| .|++-++..+..
T Consensus 14 fr~v----iIG~sGSGKT-~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMV----IIGKSGSGKT-TLIKSLLYYLRH 39 (241)
T ss_pred ceEE----EECCCCCCHH-HHHHHHHHhhcc
Confidence 3667 8999999999 566677766543
No 293
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.32 E-value=0.43 Score=43.12 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=22.8
Q ss_pred hhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 171 ESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 171 Q~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
|.+.+-.++...+.-++ ++++||||||... -.++..+.
T Consensus 68 ~~~~l~~~~~~~~Glil----isG~tGSGKTT~l-~all~~i~ 105 (264)
T cd01129 68 NLEIFRKLLEKPHGIIL----VTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred HHHHHHHHHhcCCCEEE----EECCCCCcHHHHH-HHHHhhhC
Confidence 44444333311333577 9999999999654 44556554
No 294
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.17 E-value=0.53 Score=42.39 Aligned_cols=29 Identities=10% Similarity=-0.071 Sum_probs=22.5
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
.+.+++ ++|+||||||... -.++..+...
T Consensus 126 ~~~~il----i~G~tGSGKTT~l-~all~~i~~~ 154 (270)
T PF00437_consen 126 GRGNIL----ISGPTGSGKTTLL-NALLEEIPPE 154 (270)
T ss_dssp TTEEEE----EEESTTSSHHHHH-HHHHHHCHTT
T ss_pred cceEEE----EECCCccccchHH-HHHhhhcccc
Confidence 578999 9999999999654 5666666553
No 295
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=87.12 E-value=2.4 Score=41.13 Aligned_cols=79 Identities=15% Similarity=0.001 Sum_probs=43.2
Q ss_pred eeccCCChhHHHH-HHHHHHHHHcCCCCCCCCCceEEEEcC--cHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHH---
Q psy10677 192 KKAEVQSRSVFTY-ILPALYHILKMPKLEEGDGPIALVLAP--TRELAQQIQAVISIFSRTMRIRHACLYGGTSKMY--- 265 (317)
Q Consensus 192 ~~a~tGsGKTla~-~lp~l~~l~~~~~~~~~~~~~alil~P--treLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~--- 265 (317)
++|++|+|||.+. -|.. .+.+ .|-++++++. -|.-|. .+++.++...++.+...+++.+...
T Consensus 105 lvG~~GvGKTTtaaKLA~--~l~~-------~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp~~i~~ 172 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAY--YYQR-------KGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDPVKIAS 172 (429)
T ss_pred EECCCCCCHHHHHHHHHH--HHHH-------CCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCHHHHHH
Confidence 8999999998643 3332 2322 1335555443 254443 4455556556666665555444211
Q ss_pred -HHHHc-----cCcEEECcHHHH
Q psy10677 266 -QVILL-----RILTSATNTSLG 282 (317)
Q Consensus 266 -~~~~~-----~~ilv~TP~~l~ 282 (317)
..... ..|+|=||||+.
T Consensus 173 ~~l~~~~~~~~DvViIDTaGr~~ 195 (429)
T TIGR01425 173 EGVEKFKKENFDIIIVDTSGRHK 195 (429)
T ss_pred HHHHHHHhCCCCEEEEECCCCCc
Confidence 12222 128999999984
No 296
>PRK10867 signal recognition particle protein; Provisional
Probab=87.10 E-value=2.3 Score=41.33 Aligned_cols=81 Identities=12% Similarity=-0.032 Sum_probs=40.9
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc-C-cHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHH-
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA-P-TRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVI- 268 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~-P-treLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~- 268 (317)
+++++|||||.+..- +..++... .+-++++++ = .|.-|. ++++.++...++.+.....+.+...-..
T Consensus 105 ~vG~~GsGKTTtaak-LA~~l~~~------~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~~~~~dp~~i~~~ 174 (433)
T PRK10867 105 MVGLQGAGKTTTAGK-LAKYLKKK------KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPSGDGQDPVDIAKA 174 (433)
T ss_pred EECCCCCcHHHHHHH-HHHHHHHh------cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEecCCCCCHHHHHHH
Confidence 889999999975322 22233321 133444443 2 244332 3445555656666554422333222111
Q ss_pred Hc--------cCcEEECcHHHH
Q psy10677 269 LL--------RILTSATNTSLG 282 (317)
Q Consensus 269 ~~--------~~ilv~TP~~l~ 282 (317)
.+ ..|||=||||+.
T Consensus 175 a~~~a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 175 ALEEAKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHHHHHhcCCCEEEEeCCCCcc
Confidence 11 117999999873
No 297
>KOG4439|consensus
Probab=87.05 E-value=2.3 Score=43.24 Aligned_cols=109 Identities=15% Similarity=0.054 Sum_probs=65.1
Q ss_pred CCCchhhhhccccccc---cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCc---eEEEEcCcHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNF---QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGP---IALVLAPTRELAQQI 239 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~---~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~---~alil~PtreLa~Qi 239 (317)
++-|+|..++--+.-. .+..-| +.-.-|-|||+.-+--++..=... ..+++.++ ..||+||-+ |..|-
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGI----LaddmGLGKTlsmislil~qK~~~-~~~~~~~~~a~~TLII~PaS-li~qW 398 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGI----LADDMGLGKTLSMISLILHQKAAR-KAREKKGESASKTLIICPAS-LIHQW 398 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcc----cccccccccchHHHHHHHHHHHHH-HhhcccccccCCeEEeCcHH-HHHHH
Confidence 6788898888666521 122334 456778999986544444322111 11111221 489999964 56677
Q ss_pred HHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC--cEEECcHH
Q psy10677 240 QAVISIFSRTMRIRHACLYGGTSKMYQVILLRI--LTSATNTS 280 (317)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~ 280 (317)
+.++..-...--+++.+.+|....+-....++. |||+|=.-
T Consensus 399 ~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~l 441 (901)
T KOG4439|consen 399 EAEVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNL 441 (901)
T ss_pred HHHHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeec
Confidence 777766655556888887776655555555655 77777533
No 298
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=86.97 E-value=8.9 Score=35.71 Aligned_cols=140 Identities=10% Similarity=0.018 Sum_probs=78.0
Q ss_pred CCCchhhhhccccccc--cCc---CcccccceeccCCChhHHHHHHHHHHHHHcCCCC-----------CCCCCceEEEE
Q psy10677 166 KCGDKESKNWTIPLNF--QAK---KFISVLQKKAEVQSRSVFTYILPALYHILKMPKL-----------EEGDGPIALVL 229 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~--~g~---dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~-----------~~~~~~~alil 229 (317)
+++|.|..+|..+..- +|+ -++ +.||.|+||+... .-+...+...... ..+..|-..++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~L----f~Gp~G~GK~~lA-~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i 78 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLL----ICGPEGLGKRAVA-LALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLV 78 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEe----eECCCCCCHHHHH-HHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEE
Confidence 3488888888776521 222 466 8999999987532 2344455543211 12456878888
Q ss_pred --cCcH--------HHHHHHHHHHHHHhcC---CCcEEEEEECCCCHHH--HHHHccC----------cEEEC-cHHHHH
Q psy10677 230 --APTR--------ELAQQIQAVISIFSRT---MRIRHACLYGGTSKMY--QVILLRI----------LTSAT-NTSLGI 283 (317)
Q Consensus 230 --~Ptr--------eLa~Qi~~~~~~l~~~---~~~~~~~~~gg~~~~~--~~~~~~~----------ilv~T-P~~l~~ 283 (317)
.|.. --+.||.+..+.+... -+.|++.+........ ....++. |+++. |.+|+.
T Consensus 79 ~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 79 SFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred ecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 6753 2366776665555432 2567777765433222 2222222 46665 788888
Q ss_pred HHhcC--CCCCCCCc--hhHHHhhhcCCcHH
Q psy10677 284 YLQQN--DAHSPCLS--VWRRLQDILGLTEE 310 (317)
Q Consensus 284 ~l~~~--~~~~~~ld--e~d~l~~~~gf~~~ 310 (317)
-+.+. .+.+...+ |+-..+...|..++
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~~~~~~ 189 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQGVSER 189 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHcCCChH
Confidence 77764 34444443 44444443455544
No 299
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=86.74 E-value=0.37 Score=37.41 Aligned_cols=18 Identities=6% Similarity=-0.130 Sum_probs=14.2
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+..++ +.||+|||||...
T Consensus 2 ~~~~~----l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVIL----IVGPPGSGKTTLA 19 (148)
T ss_pred CCEEE----EECCCCCcHHHHH
Confidence 34566 9999999999654
No 300
>KOG0060|consensus
Probab=86.41 E-value=0.35 Score=47.93 Aligned_cols=18 Identities=0% Similarity=-0.018 Sum_probs=16.6
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
+|.+++ +++|+|+|||--
T Consensus 460 ~g~~LL----ItG~sG~GKtSL 477 (659)
T KOG0060|consen 460 SGQNLL----ITGPSGCGKTSL 477 (659)
T ss_pred CCCeEE----EECCCCCchhHH
Confidence 999999 999999999853
No 301
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=86.12 E-value=0.28 Score=48.34 Aligned_cols=37 Identities=11% Similarity=0.054 Sum_probs=22.4
Q ss_pred hhhhccccccccCc-CcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 171 ESKNWTIPLNFQAK-KFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 171 Q~~~ip~~l~~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
|.+.+-.++. ... -++ ++||||||||... -.++..+.
T Consensus 230 ~~~~l~~~~~-~~~Glil----itGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 230 LLSRFERLIR-RPHGIIL----VTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred HHHHHHHHHh-cCCCEEE----EEcCCCCCHHHHH-HHHHhccC
Confidence 4444444441 222 367 8999999999754 33466654
No 302
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=85.84 E-value=0.59 Score=47.79 Aligned_cols=49 Identities=16% Similarity=0.041 Sum_probs=35.0
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
..+++ +.||||||||..+++|-|.... -.+||+=|-.|+.......-++
T Consensus 144 ~~hvL----viApTrSGKgvg~VIPnLL~~~----------~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 144 PEHVL----CFAPTRSGKGVGLVVPTLLTWP----------GSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred CceEE----EEecCCCCcceeEehhhHHhCC----------CCEEEEeCcchHHHHHHHHHHh
Confidence 35777 9999999999999999876431 2566666777776655444333
No 303
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=85.84 E-value=0.96 Score=46.78 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=32.8
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
+..+||+|||.||+=-|.+ |.+. -.-.+-+|+|||.+.-.-++...+.
T Consensus 79 I~METGTGKTy~Ylrtmfe-Lhk~-----YG~~KFIivVPs~AIkeGv~~~s~~ 126 (985)
T COG3587 79 ILMETGTGKTYTYLRTMFE-LHKK-----YGLFKFIIVVPSLAIKEGVFLTSKE 126 (985)
T ss_pred EEEecCCCceeeHHHHHHH-HHHH-----hCceeEEEEeccHHHHhhhHHHHHH
Confidence 7799999999999766654 2221 1346899999997765554444433
No 304
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=85.83 E-value=1.5 Score=46.80 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=60.3
Q ss_pred Cchhhhhcccccc------ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN------FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 168 t~iQ~~~ip~~l~------~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
...|-.|+..+.. ..|--++ -.|.||||||+|=. -|+.-|.. +..|.+..|-.-.|-|-.|..+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~v----NMASTGcGKT~aNA-RImyaLsd-----~~~g~RfsiALGLRTLTLQTGd 479 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGV----NMASTGCGKTLANA-RAMYALRD-----DKQGARFAIALGLRSLTLQTGH 479 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEE----EecCCCcchHHHHH-HHHHHhCC-----CCCCceEEEEccccceeccchH
Confidence 6678888766653 2344566 67999999999853 22223322 2457788888899999999999
Q ss_pred HHHHHhcCCCcEEEEEECCCC
Q psy10677 242 VISIFSRTMRIRHACLYGGTS 262 (317)
Q Consensus 242 ~~~~l~~~~~~~~~~~~gg~~ 262 (317)
.+++-+.--+=..++++||..
T Consensus 480 a~r~rL~L~~ddLAVlIGs~A 500 (1110)
T TIGR02562 480 ALKTRLNLSDDDLAVLIGGTA 500 (1110)
T ss_pred HHHHhcCCCccceEEEECHHH
Confidence 999877655566778888744
No 305
>PRK08181 transposase; Validated
Probab=85.64 E-value=1.4 Score=40.03 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=30.8
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
.+++++ +.||+|+|||.-.. .+...+... | ..++..+..+|..++..
T Consensus 105 ~~~nll----l~Gp~GtGKTHLa~-Aia~~a~~~-------g-~~v~f~~~~~L~~~l~~ 151 (269)
T PRK08181 105 KGANLL----LFGPPGGGKSHLAA-AIGLALIEN-------G-WRVLFTRTTDLVQKLQV 151 (269)
T ss_pred cCceEE----EEecCCCcHHHHHH-HHHHHHHHc-------C-CceeeeeHHHHHHHHHH
Confidence 778899 99999999995332 333333332 3 33455577888887744
No 306
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=85.55 E-value=4.7 Score=36.60 Aligned_cols=80 Identities=14% Similarity=0.039 Sum_probs=40.9
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHH-H
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA--PTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV-I 268 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~--PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~-~ 268 (317)
+++++|+|||....--. ..+.+ .+.+++++. +.|.-+ .+++..+....++.+.....+.+..... .
T Consensus 77 l~G~~G~GKTTt~akLA-~~l~~-------~g~~V~li~~D~~r~~a---~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~ 145 (272)
T TIGR00064 77 FVGVNGVGKTTTIAKLA-NKLKK-------QGKSVLLAAGDTFRAAA---IEQLEEWAKRLGVDVIKQKEGADPAAVAFD 145 (272)
T ss_pred EECCCCCcHHHHHHHHH-HHHHh-------cCCEEEEEeCCCCCHHH---HHHHHHHHHhCCeEEEeCCCCCCHHHHHHH
Confidence 78999999997543222 22322 234555554 234433 2345555555565544332232222111 1
Q ss_pred ----H----ccCcEEECcHHHH
Q psy10677 269 ----L----LRILTSATNTSLG 282 (317)
Q Consensus 269 ----~----~~~ilv~TP~~l~ 282 (317)
. ...++|=|||++.
T Consensus 146 ~l~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 146 AIQKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHHHHHHCCCCEEEEeCCCCCc
Confidence 1 1118999999974
No 307
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=85.51 E-value=1.3 Score=42.02 Aligned_cols=69 Identities=22% Similarity=0.285 Sum_probs=47.6
Q ss_pred CCchhhhhccccc----cccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH--H
Q psy10677 167 CGDKESKNWTIPL----NFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI--Q 240 (317)
Q Consensus 167 ~t~iQ~~~ip~~l----~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi--~ 240 (317)
|++=|..++-.++ +.+|..+. +.|+-|+|||.. +-.+....+. .+..+++++||.--|..+ .
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~f----v~G~~GtGKs~l--~~~i~~~~~~------~~~~~~~~a~tg~AA~~i~~G 69 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFF----VTGPAGTGKSFL--IKAIIDYLRS------RGKKVLVTAPTGIAAFNIPGG 69 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEE----EEcCCCCChhHH--HHHHHHHhcc------ccceEEEecchHHHHHhccCC
Confidence 5677888876661 12888999 999999999854 4444443332 357899999998888777 4
Q ss_pred HHHHHHh
Q psy10677 241 AVISIFS 247 (317)
Q Consensus 241 ~~~~~l~ 247 (317)
..+..+.
T Consensus 70 ~T~hs~f 76 (364)
T PF05970_consen 70 RTIHSFF 76 (364)
T ss_pred cchHHhc
Confidence 4444443
No 308
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=85.34 E-value=0.35 Score=47.05 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=29.6
Q ss_pred CCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCC
Q psy10677 61 YPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDP 101 (317)
Q Consensus 61 g~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p 101 (317)
.+|+| +||+|..++||| --|+|| .+.+.++-|+.-
T Consensus 407 ~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDI------p~vDlVifYEpv 453 (542)
T COG1111 407 KGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDI------PEVDLVIFYEPV 453 (542)
T ss_pred cccCHHHHHHHHHHHhcCCceEEEEcccccccCCC------CcccEEEEecCC
Confidence 56888 999999999999 678999 788888877643
No 309
>PRK10436 hypothetical protein; Provisional
Probab=85.28 E-value=0.56 Score=45.91 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=24.7
Q ss_pred hhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 171 ESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 171 Q~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
|.+.+..++...+--++ ++||||||||... ..++..+..
T Consensus 206 ~~~~l~~~~~~~~GliL----vtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 206 QLAQFRQALQQPQGLIL----VTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred HHHHHHHHHHhcCCeEE----EECCCCCChHHHH-HHHHHhhCC
Confidence 44445444421334567 8999999999764 456676643
No 310
>PRK06526 transposase; Provisional
Probab=85.24 E-value=1.4 Score=39.62 Aligned_cols=46 Identities=9% Similarity=-0.007 Sum_probs=28.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.+.+++ +.||+|+|||....-- ...+... |-.+++ ....+|..++.
T Consensus 97 ~~~nll----l~Gp~GtGKThLa~al-~~~a~~~-------g~~v~f-~t~~~l~~~l~ 142 (254)
T PRK06526 97 GKENVV----FLGPPGTGKTHLAIGL-GIRACQA-------GHRVLF-ATAAQWVARLA 142 (254)
T ss_pred cCceEE----EEeCCCCchHHHHHHH-HHHHHHC-------CCchhh-hhHHHHHHHHH
Confidence 778999 9999999999754332 2333221 333433 45556666664
No 311
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=85.10 E-value=0.76 Score=42.86 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=36.0
Q ss_pred CchhhhhccccccccCc-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAK-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI 239 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi 239 (317)
++-|...+-.+. .++ |++ +++.||||||... =.++..+.. .-+++.+=-|.||-.+.
T Consensus 159 ~~~~a~~L~~av--~~r~NIL----isGGTGSGKTTlL-Nal~~~i~~--------~eRvItiEDtaELql~~ 216 (355)
T COG4962 159 IRRAAKFLRRAV--GIRCNIL----ISGGTGSGKTTLL-NALSGFIDS--------DERVITIEDTAELQLAH 216 (355)
T ss_pred CHHHHHHHHHHH--hhceeEE----EeCCCCCCHHHHH-HHHHhcCCC--------cccEEEEeehhhhccCC
Confidence 778888877777 555 999 9999999999531 111212211 12666666666665444
No 312
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=85.07 E-value=1.6 Score=38.54 Aligned_cols=53 Identities=8% Similarity=0.082 Sum_probs=31.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|.-++ +.+++|+|||...+ -++..+.+ .+..+++++ +.+-..+..+.+..+.
T Consensus 23 ~g~~~~----i~G~~G~GKTtl~~-~~~~~~~~-------~g~~~~yi~-~e~~~~~~~~~~~~~g 75 (230)
T PRK08533 23 AGSLIL----IEGDESTGKSILSQ-RLAYGFLQ-------NGYSVSYVS-TQLTTTEFIKQMMSLG 75 (230)
T ss_pred CCcEEE----EECCCCCCHHHHHH-HHHHHHHh-------CCCcEEEEe-CCCCHHHHHHHHHHhC
Confidence 566777 99999999996532 22333332 245667776 4444455555555443
No 313
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=84.75 E-value=0.72 Score=46.84 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=36.7
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
..++ +.||||||||..+++|-+-. . +--++|+=|-.|++......-++.+
T Consensus 212 ~H~l----v~ApTgsGKgvg~VIPnLL~---~-------~gS~VV~DpKgE~~~~Ta~~R~~~G 261 (623)
T TIGR02767 212 THMI----FFAGSGGFKTTSVVVPTALK---Y-------GGPLVCLDPSTEVAPMVCEHRRQAG 261 (623)
T ss_pred ceEE----EEeCCCCCccceeehhhhhc---C-------CCCEEEEEChHHHHHHHHHHHHHcC
Confidence 5778 99999999999999997532 1 2257777788888776665544443
No 314
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=84.74 E-value=0.6 Score=46.98 Aligned_cols=39 Identities=8% Similarity=0.024 Sum_probs=24.9
Q ss_pred hhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 170 KESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 170 iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
-|.+.+-.++....--++ ++||||||||.+. ..++..+.
T Consensus 303 ~~~~~l~~~~~~~~Glil----v~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 303 DQKALFLEAIHKPQGMVL----VTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHHHHHHHHHhcCCeEE----EECCCCCCHHHHH-HHHHHhhC
Confidence 344455444421334567 8999999999764 55667664
No 315
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=84.56 E-value=0.67 Score=47.27 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=37.0
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
...++ +.||||||||..+++|-+-. . +.-++|+=|-.|++.......++.
T Consensus 224 ~~H~L----v~ApTgsGKt~g~VIPnLL~---~-------~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGL----VFAGSGGFKTTSVVVPTALK---W-------GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEE----EEeCCCCCccceEehhhhhc---C-------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 35677 99999999999999997632 1 235677778888887766655444
No 316
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=84.42 E-value=2.7 Score=40.93 Aligned_cols=80 Identities=10% Similarity=-0.087 Sum_probs=40.6
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc-Cc-HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHH---
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA-PT-RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ--- 266 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~-Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~--- 266 (317)
+++++|+|||.+..-= ..++.+. +-++++++ .+ |.- ..++++.++...++.+.......+....
T Consensus 100 lvG~~GsGKTTtaakL-A~~L~~~-------g~kV~lV~~D~~R~a---a~eQL~~la~~~gvp~~~~~~~~d~~~i~~~ 168 (437)
T PRK00771 100 LVGLQGSGKTTTAAKL-ARYFKKK-------GLKVGLVAADTYRPA---AYDQLKQLAEKIGVPFYGDPDNKDAVEIAKE 168 (437)
T ss_pred EECCCCCcHHHHHHHH-HHHHHHc-------CCeEEEecCCCCCHH---HHHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence 8999999999754322 2334332 23344333 33 332 2445555665556554332222222211
Q ss_pred -HHHcc--C-cEEECcHHHH
Q psy10677 267 -VILLR--I-LTSATNTSLG 282 (317)
Q Consensus 267 -~~~~~--~-ilv~TP~~l~ 282 (317)
..... . |||=||||+.
T Consensus 169 al~~~~~~DvVIIDTAGr~~ 188 (437)
T PRK00771 169 GLEKFKKADVIIVDTAGRHA 188 (437)
T ss_pred HHHHhhcCCEEEEECCCccc
Confidence 11111 2 7999999886
No 317
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.30 E-value=0.54 Score=32.57 Aligned_cols=19 Identities=5% Similarity=-0.120 Sum_probs=15.3
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|...+ +.+++|||||..+
T Consensus 22 ~g~~tl----i~G~nGsGKSTll 40 (62)
T PF13555_consen 22 RGDVTL----ITGPNGSGKSTLL 40 (62)
T ss_pred CCcEEE----EECCCCCCHHHHH
Confidence 455678 9999999999754
No 318
>KOG0742|consensus
Probab=84.28 E-value=0.83 Score=43.65 Aligned_cols=104 Identities=10% Similarity=0.070 Sum_probs=58.4
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
.|++.=|+|.|-+.+........ .....|. .+ +|++ ..+|+|+|||++.
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTa-------NTK~h~a-----pf----RNil----fyGPPGTGKTm~A----------- 401 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATA-------NTKKHQA-----PF----RNIL----FYGPPGTGKTMFA----------- 401 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhc-------ccccccc-----hh----hhee----eeCCCCCCchHHH-----------
Confidence 36666688888777766533322 0011111 11 5666 9999999999654
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-CCCCCC
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-DAHSPC 294 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-~~~~~~ 294 (317)
||| ....|+..++.+||.-..--... |+--..|.|+-+.. .--++.
T Consensus 402 -----------------rel-----------Ar~SGlDYA~mTGGDVAPlG~qa-----VTkiH~lFDWakkS~rGLllF 448 (630)
T KOG0742|consen 402 -----------------REL-----------ARHSGLDYAIMTGGDVAPLGAQA-----VTKIHKLFDWAKKSRRGLLLF 448 (630)
T ss_pred -----------------HHH-----------HhhcCCceehhcCCCccccchHH-----HHHHHHHHHHHhhcccceEEE
Confidence 122 23457788888887543322222 12223445554443 333567
Q ss_pred CchhHHHhh
Q psy10677 295 LSVWRRLQD 303 (317)
Q Consensus 295 lde~d~l~~ 303 (317)
+||||-.|.
T Consensus 449 IDEADAFLc 457 (630)
T KOG0742|consen 449 IDEADAFLC 457 (630)
T ss_pred ehhhHHHHH
Confidence 899998774
No 319
>KOG1805|consensus
Probab=84.24 E-value=1.5 Score=46.01 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=70.6
Q ss_pred CCchhhhhccccccccCcCc-ccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKF-ISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dv-i~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
++.-|.+|+-.++ ..+|. + +.|=+|+|||.....- +.-|.. .|-++|..+-|..-+.-|.-.++.
T Consensus 670 LN~dQr~A~~k~L--~aedy~L----I~GMPGTGKTTtI~~L-IkiL~~-------~gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 670 LNNDQRQALLKAL--AAEDYAL----ILGMPGTGKTTTISLL-IKILVA-------LGKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred cCHHHHHHHHHHH--hccchhe----eecCCCCCchhhHHHH-HHHHHH-------cCCeEEEEehhhHHHHHHHHHHhc
Confidence 3777999999999 66664 4 6799999999765432 222222 356888888888766555444333
Q ss_pred HhcCCCcEEEEE---------------ECCCCHHH---HHHHccC--cEEECcHHHH-HHHhcCCCCCCCCchhHHHhh
Q psy10677 246 FSRTMRIRHACL---------------YGGTSKMY---QVILLRI--LTSATNTSLG-IYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 246 l~~~~~~~~~~~---------------~gg~~~~~---~~~~~~~--ilv~TP~~l~-~~l~~~~~~~~~lde~d~l~~ 303 (317)
+ ++.+.-+ +.+++.+. -...+.. |+.||---+. -++.++.+++..+|||-.+.-
T Consensus 736 ~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 736 F----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred c----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhhccccCEEEEcccccccc
Confidence 3 3332222 22222111 1112222 5666653333 456677899999999977654
No 320
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=84.23 E-value=1.4 Score=37.88 Aligned_cols=21 Identities=14% Similarity=-0.073 Sum_probs=15.7
Q ss_pred eeccCCChhHHHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~ 213 (317)
+++|||||||... -.++..+.
T Consensus 6 I~GptGSGKTTll-~~ll~~~~ 26 (198)
T cd01131 6 VTGPTGSGKSTTL-AAMIDYIN 26 (198)
T ss_pred EECCCCCCHHHHH-HHHHHHhh
Confidence 8999999999764 44555554
No 321
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.05 E-value=0.8 Score=44.78 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=26.0
Q ss_pred CchhhhhccccccccCcC-cccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 168 GDKESKNWTIPLNFQAKK-FISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~d-vi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
++.|.+.+-.+++ .... ++ ++||||||||.. +..++..+...
T Consensus 243 ~~~~~~~~~~~~~-~p~GliL----vTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLN-RPQGLIL----VTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHh-CCCeEEE----EeCCCCCCHHHH-HHHHHHHhcCC
Confidence 4445555555552 2222 44 899999999976 45667777654
No 322
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.98 E-value=0.65 Score=43.07 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=27.0
Q ss_pred Cchhhhh-ccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 168 GDKESKN-WTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 168 t~iQ~~~-ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
++.|..- |-.+- .+++++ ++++||||||. ++.+++..+-
T Consensus 129 ~~~~~ayL~~~ie--~~~sii----i~G~t~sGKTt-~lnall~~Ip 168 (312)
T COG0630 129 SPEQAAYLWLAIE--ARKSII----ICGGTASGKTT-LLNALLDFIP 168 (312)
T ss_pred CHHHHHHHHHHHH--cCCcEE----EECCCCCCHHH-HHHHHHHhCC
Confidence 4455443 44455 899999 99999999994 4555555554
No 323
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=83.86 E-value=4 Score=39.63 Aligned_cols=80 Identities=18% Similarity=0.109 Sum_probs=40.1
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc-Cc-HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHH---
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA-PT-RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ--- 266 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~-Pt-reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~--- 266 (317)
+++++|||||....- +..++... .+-+++++. =| |.-| .++++.++...++.+.....+.+..+-
T Consensus 104 ~vG~~GsGKTTtaak-LA~~l~~~------~g~kV~lV~~D~~R~~a---~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~ 173 (428)
T TIGR00959 104 MVGLQGSGKTTTCGK-LAYYLKKK------QGKKVLLVACDLYRPAA---IEQLKVLGQQVGVPVFALGKGQSPVEIARR 173 (428)
T ss_pred EECCCCCcHHHHHHH-HHHHHHHh------CCCeEEEEeccccchHH---HHHHHHHHHhcCCceEecCCCCCHHHHHHH
Confidence 899999999975422 22223211 123444443 32 3333 334455555556665544333333211
Q ss_pred -HHHc-----cCcEEECcHHH
Q psy10677 267 -VILL-----RILTSATNTSL 281 (317)
Q Consensus 267 -~~~~-----~~ilv~TP~~l 281 (317)
.... ..|||=||||+
T Consensus 174 al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 174 ALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHhcCCCEEEEeCCCcc
Confidence 1111 12899999986
No 324
>PRK02362 ski2-like helicase; Provisional
Probab=83.85 E-value=0.63 Score=48.38 Aligned_cols=58 Identities=16% Similarity=0.031 Sum_probs=38.6
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCC----CCCCCccccCCC-CHHHHHHHHHHC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS----YPDPSVNHLQGK-TKEEIDSFRKEH 121 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n----f~~p~~~~i~~~-~~~~i~~~~~~~ 121 (317)
+||+|++ .|++|.++|||| |+|+|+ .....++. |+... . ...+ ..+.++..++.+
T Consensus 309 hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~Gvnl------Pa~~VVI~~~~~yd~~~-g-~~~~s~~~y~Qm~GRAG 380 (737)
T PRK02362 309 HHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNL------PARRVIIRDYRRYDGGA-G-MQPIPVLEYHQMAGRAG 380 (737)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCC------CceEEEEecceeecCCC-C-ceeCCHHHHHHHhhcCC
Confidence 6999998 999999999999 999999 44443332 33111 1 0111 256777777776
Q ss_pred Cce
Q psy10677 122 NIT 124 (317)
Q Consensus 122 ~i~ 124 (317)
+..
T Consensus 381 R~g 383 (737)
T PRK02362 381 RPG 383 (737)
T ss_pred CCC
Confidence 644
No 325
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=83.81 E-value=0.73 Score=47.03 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=35.9
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
...++ +.||||||||..+++|-|... +..+||+=|-.|+.......
T Consensus 175 ~~Hvl----viapTgSGKgvg~ViPnLL~~----------~~S~VV~D~KGE~~~~Tag~ 220 (636)
T PRK13880 175 PEHVL----TYAPTRSGKGVGLVVPTLLSW----------GHSSVITDLKGELWALTAGW 220 (636)
T ss_pred CceEE----EEecCCCCCceEEEccchhhC----------CCCEEEEeCcHHHHHHHHHH
Confidence 35788 999999999999999998531 33688888989987655444
No 326
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=83.39 E-value=5.6 Score=36.99 Aligned_cols=19 Identities=5% Similarity=-0.167 Sum_probs=14.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+.=+. ++||+|+|||...
T Consensus 113 ~~~vi~----lvGpnGsGKTTt~ 131 (318)
T PRK10416 113 KPFVIL----VVGVNGVGKTTTI 131 (318)
T ss_pred CCeEEE----EECCCCCcHHHHH
Confidence 344455 8899999999653
No 327
>KOG0953|consensus
Probab=83.10 E-value=1.4 Score=43.60 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=40.0
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECC
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 260 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg 260 (317)
-+|||.||||.-. |+++... -.+++--|.|-||..|++.+.+. |+.+-+++|.
T Consensus 196 H~GPTNSGKTy~A----Lqrl~~a--------ksGvycGPLrLLA~EV~~r~na~----gipCdL~TGe 248 (700)
T KOG0953|consen 196 HVGPTNSGKTYRA----LQRLKSA--------KSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGE 248 (700)
T ss_pred EeCCCCCchhHHH----HHHHhhh--------ccceecchHHHHHHHHHHHhhhc----CCCccccccc
Confidence 7899999999654 6777653 35677889999999999988775 4555555553
No 328
>PRK06835 DNA replication protein DnaC; Validated
Probab=83.01 E-value=2.3 Score=39.71 Aligned_cols=47 Identities=11% Similarity=0.148 Sum_probs=31.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
.+.+++ +.|+||+|||.- +..+...+... +-.+ +..+..+|..++..
T Consensus 182 ~~~~Ll----l~G~~GtGKThL-a~aIa~~l~~~-------g~~V-~y~t~~~l~~~l~~ 228 (329)
T PRK06835 182 NNENLL----FYGNTGTGKTFL-SNCIAKELLDR-------GKSV-IYRTADELIEILRE 228 (329)
T ss_pred cCCcEE----EECCCCCcHHHH-HHHHHHHHHHC-------CCeE-EEEEHHHHHHHHHH
Confidence 457888 999999999973 33455555532 3344 44567788777654
No 329
>KOG1132|consensus
Probab=82.90 E-value=2.6 Score=43.86 Aligned_cols=78 Identities=9% Similarity=-0.025 Sum_probs=49.8
Q ss_pred Cchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCC-----------C-----CCC---------
Q psy10677 168 GDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMP-----------K-----LEE--------- 220 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~-----------~-----~~~--------- 220 (317)
++.|...+..++. +.+.+.+ +.+|||+|||++.+-..|......+ + ...
T Consensus 23 Y~~Q~a~M~rvl~~L~~~q~~l----lESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~ 98 (945)
T KOG1132|consen 23 YPTQLAFMTRVLSCLDRKQNGL----LESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSE 98 (945)
T ss_pred chHHHHHHHHHHHHHHHhhhhh----ccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchh
Confidence 8899877665551 1556777 8999999999998877665443211 0 000
Q ss_pred ---------CCCceEEEEcCcHHHHHHHHHHHHHHhcC
Q psy10677 221 ---------GDGPIALVLAPTRELAQQIQAVISIFSRT 249 (317)
Q Consensus 221 ---------~~~~~alil~PtreLa~Qi~~~~~~l~~~ 249 (317)
-.-|+..+-.-|..=..|+.+++++....
T Consensus 99 e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 99 EAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred hhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 01367777777776666776766665543
No 330
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=82.84 E-value=2.9 Score=42.68 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=39.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcH--HHHHHHHHHHHHHhcC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTR--ELAQQIQAVISIFSRT 249 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptr--eLa~Qi~~~~~~l~~~ 249 (317)
...+++ +.|+||||||..+. .++....+. +..++++=|-. +|...++..++..+..
T Consensus 175 ~~~H~l----v~G~TGsGKT~l~~-~l~~q~i~~-------g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 175 RVGHTL----VLGTTGVGKTRLAE-LLITQDIRR-------GDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCCcEE----EECCCCCCHHHHHH-HHHHHHHHc-------CCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 445677 99999999997764 444444432 45667777764 4888888888877654
No 331
>KOG1533|consensus
Probab=82.66 E-value=1 Score=39.92 Aligned_cols=23 Identities=13% Similarity=-0.048 Sum_probs=18.0
Q ss_pred eeccCCChhHHHHHHHHHHHHHcC
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+++|+||||| +|+..+.+.+...
T Consensus 7 VIGPPgSGKs-TYc~g~~~fls~~ 29 (290)
T KOG1533|consen 7 VIGPPGSGKS-TYCNGMSQFLSAI 29 (290)
T ss_pred EEcCCCCCcc-chhhhHHHHHHHh
Confidence 7899999999 6777776666543
No 332
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=82.64 E-value=2.3 Score=47.64 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=45.3
Q ss_pred CCCchhhhhccccccccC--cCcccccceeccCCChhHHHH--HHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQA--KKFISVLQKKAEVQSRSVFTY--ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~tGsGKTla~--~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.||+-|.+|+-.++ .. +-++ +.+..|+|||... ++.++..+.. ..+..++.++||..-|..+.
T Consensus 835 ~Lt~~Qr~Av~~iL--ts~dr~~~----IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMIL--ETSDRFTV----VQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHH--hCCCceEE----EEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHHH
Confidence 56999999999998 55 5566 8899999999763 3344443322 24577888999987666543
No 333
>PRK06921 hypothetical protein; Provisional
Probab=82.44 E-value=3.2 Score=37.50 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=30.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.+.+++ +.|++|+|||... ..+...+... .+..+++ ++..++..++...+
T Consensus 116 ~~~~l~----l~G~~G~GKThLa-~aia~~l~~~------~g~~v~y-~~~~~l~~~l~~~~ 165 (266)
T PRK06921 116 RKNSIA----LLGQPGSGKTHLL-TAAANELMRK------KGVPVLY-FPFVEGFGDLKDDF 165 (266)
T ss_pred CCCeEE----EECCCCCcHHHHH-HHHHHHHhhh------cCceEEE-EEHHHHHHHHHHHH
Confidence 466788 9999999999533 3445555432 1444555 45667766665443
No 334
>PRK04328 hypothetical protein; Provisional
Probab=82.12 E-value=2.3 Score=37.97 Aligned_cols=53 Identities=9% Similarity=0.022 Sum_probs=34.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|.-++ +.|++|||||.-.+--+.+.+.+ +-.+++++ +.|-..++.+.++.+.
T Consensus 22 ~gs~il----i~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVL----LSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEE----EEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 566777 99999999985332223333322 44566665 6677777777777764
No 335
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=81.82 E-value=0.47 Score=36.95 Aligned_cols=57 Identities=21% Similarity=0.162 Sum_probs=38.3
Q ss_pred EEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCC
Q psy10677 40 FVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYP 99 (317)
Q Consensus 40 ~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~ 99 (317)
.+++++..+-.+.+...+. +||+++. +|++|...+|++ ++|+|+ .....+..++
T Consensus 31 ~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~------~~~~~vi~~~ 104 (131)
T cd00079 31 VLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDL------PNVSVVINYD 104 (131)
T ss_pred EEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcCh------hhCCEEEEeC
Confidence 3455555443444444432 8999876 899999999999 899998 5566666555
Q ss_pred CCC
Q psy10677 100 DPS 102 (317)
Q Consensus 100 ~p~ 102 (317)
.+.
T Consensus 105 ~~~ 107 (131)
T cd00079 105 LPW 107 (131)
T ss_pred CCC
Confidence 543
No 336
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=81.67 E-value=4.7 Score=41.05 Aligned_cols=54 Identities=15% Similarity=0.135 Sum_probs=41.5
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcH--HHHHHHHHHHHHHhcC
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTR--ELAQQIQAVISIFSRT 249 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptr--eLa~Qi~~~~~~l~~~ 249 (317)
...+ +.|+||+|||..+.+=+.+.+.. +..++++=|-. ++...++..++..++.
T Consensus 181 gHtl----V~GtTGsGKT~l~~~li~q~i~~--------g~~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 181 GHTL----VLGTTRVGKTRLAELLITQDIRR--------GDVVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred CceE----EECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 4566 89999999999887755555532 45778888874 8899999999998873
No 337
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=81.66 E-value=8.2 Score=31.96 Aligned_cols=13 Identities=8% Similarity=-0.314 Sum_probs=11.3
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.+++|+|||...
T Consensus 5 ~~G~~G~GKTt~~ 17 (173)
T cd03115 5 LVGLQGVGKTTTA 17 (173)
T ss_pred EECCCCCCHHHHH
Confidence 7899999999764
No 338
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=81.59 E-value=1.2 Score=44.75 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=20.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
..++++ +.|+||||||. ++-.++..+.+
T Consensus 175 e~~h~l----i~G~tGsGKs~-~i~~ll~~~~~ 202 (566)
T TIGR02759 175 ETQHIL----IHGTTGSGKSV-AIRKLLRWIRQ 202 (566)
T ss_pred cccceE----EEcCCCCCHHH-HHHHHHHHHHh
Confidence 667888 99999999995 44556666544
No 339
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=81.40 E-value=2.3 Score=38.10 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=36.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR 248 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~ 248 (317)
.|+.++ +.+++|||||.- .+=.+....+ .|-.++++ .+.|...++.+.+..+.-
T Consensus 22 ~g~~~l----I~G~pGsGKT~f-~~qfl~~~~~-------~ge~vlyv-s~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 22 RGSVVL----ITGPPGTGKTIF-ALQFLYEGAR-------EGEPVLYV-STEESPEELLENARSFGW 75 (260)
T ss_pred CCcEEE----EEcCCCCcHHHH-HHHHHHHHHh-------cCCcEEEE-EecCCHHHHHHHHHHcCC
Confidence 677888 999999999953 3333333222 13345554 678888888888887654
No 340
>PRK11823 DNA repair protein RadA; Provisional
Probab=81.07 E-value=6 Score=38.60 Aligned_cols=92 Identities=10% Similarity=0.065 Sum_probs=52.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.|.-++ +.+++|+|||.- ++-+...+.+ .+-+++++. +.|-..|+...++.+.-.. .-..+....
T Consensus 79 ~Gs~~l----I~G~pG~GKTtL-~lq~a~~~a~-------~g~~vlYvs-~Ees~~qi~~ra~rlg~~~--~~l~~~~e~ 143 (446)
T PRK11823 79 PGSVVL----IGGDPGIGKSTL-LLQVAARLAA-------AGGKVLYVS-GEESASQIKLRAERLGLPS--DNLYLLAET 143 (446)
T ss_pred CCEEEE----EECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEE-ccccHHHHHHHHHHcCCCh--hcEEEeCCC
Confidence 355566 899999999963 3333333332 244677765 5667778877766654321 111122222
Q ss_pred CHHHHHHHccCcEEECcHHHHHHHhcCCCCCCCCchhHHHhh
Q psy10677 262 SKMYQVILLRILTSATNTSLGIYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 262 ~~~~~~~~~~~ilv~TP~~l~~~l~~~~~~~~~lde~d~l~~ 303 (317)
+ -..+.+.++....++.++|+...+..
T Consensus 144 ~---------------l~~i~~~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 144 N---------------LEAILATIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred C---------------HHHHHHHHHhhCCCEEEEechhhhcc
Confidence 2 23444556666777778887766543
No 341
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=81.04 E-value=2.3 Score=39.95 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=19.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
.+..++ ++||||||||... -.++..+.
T Consensus 121 ~~g~il----i~G~tGSGKTT~l-~al~~~i~ 147 (343)
T TIGR01420 121 PRGLIL----VTGPTGSGKSTTL-ASMIDYIN 147 (343)
T ss_pred cCcEEE----EECCCCCCHHHHH-HHHHHhhC
Confidence 445677 9999999999654 34555554
No 342
>PRK14974 cell division protein FtsY; Provisional
Probab=80.89 E-value=5.8 Score=37.22 Aligned_cols=80 Identities=14% Similarity=0.015 Sum_probs=40.0
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc--HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHH-HH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT--RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ-VI 268 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt--reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~-~~ 268 (317)
++|++|+|||.+..--+ ..+.. .+..++++... |.-+. ++++.+...+++.+.....|.+.... ..
T Consensus 145 ~~G~~GvGKTTtiakLA-~~l~~-------~g~~V~li~~Dt~R~~a~---eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ 213 (336)
T PRK14974 145 FVGVNGTGKTTTIAKLA-YYLKK-------NGFSVVIAAGDTFRAGAI---EQLEEHAERLGVKVIKHKYGADPAAVAYD 213 (336)
T ss_pred EEcCCCCCHHHHHHHHH-HHHHH-------cCCeEEEecCCcCcHHHH---HHHHHHHHHcCCceecccCCCCHHHHHHH
Confidence 89999999997543222 23332 23455555432 33332 22344445556655443333332211 11
Q ss_pred -----Hcc---CcEEECcHHHH
Q psy10677 269 -----LLR---ILTSATNTSLG 282 (317)
Q Consensus 269 -----~~~---~ilv~TP~~l~ 282 (317)
... -|+|=|+|++.
T Consensus 214 ai~~~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 214 AIEHAKARGIDVVLIDTAGRMH 235 (336)
T ss_pred HHHHHHhCCCCEEEEECCCccC
Confidence 111 17999999983
No 343
>PRK05973 replicative DNA helicase; Provisional
Probab=80.78 E-value=2.7 Score=37.38 Aligned_cols=63 Identities=10% Similarity=0.068 Sum_probs=37.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
||... ...-+. .|.-++ +.|++|+|||.-- +=++....+ .|-.+++++ ..|=..|+.+.+..+
T Consensus 52 ~p~~~-l~GGl~--~Gsl~L----IaG~PG~GKT~la-lqfa~~~a~-------~Ge~vlyfS-lEes~~~i~~R~~s~ 114 (237)
T PRK05973 52 TPAEE-LFSQLK--PGDLVL----LGARPGHGKTLLG-LELAVEAMK-------SGRTGVFFT-LEYTEQDVRDRLRAL 114 (237)
T ss_pred CCHHH-hcCCCC--CCCEEE----EEeCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEE-EeCCHHHHHHHHHHc
Confidence 66433 444555 777888 9999999999643 333333322 134566653 344456666666655
No 344
>PF05729 NACHT: NACHT domain
Probab=80.55 E-value=2.5 Score=34.17 Aligned_cols=25 Identities=12% Similarity=-0.060 Sum_probs=17.4
Q ss_pred cceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 190 LQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 190 ~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+-+.|+.|+|||.. +--++..+...
T Consensus 3 l~I~G~~G~GKStl-l~~~~~~~~~~ 27 (166)
T PF05729_consen 3 LWISGEPGSGKSTL-LRKLAQQLAEE 27 (166)
T ss_pred EEEECCCCCChHHH-HHHHHHHHHhc
Confidence 34899999999964 34555555554
No 345
>PRK09183 transposase/IS protein; Provisional
Probab=80.53 E-value=3.8 Score=36.88 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=28.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.|.+++ +.||+|+|||.-...-. ..+.. .|-.++++ +..+|..++.
T Consensus 101 ~~~~v~----l~Gp~GtGKThLa~al~-~~a~~-------~G~~v~~~-~~~~l~~~l~ 146 (259)
T PRK09183 101 RNENIV----LLGPSGVGKTHLAIALG-YEAVR-------AGIKVRFT-TAADLLLQLS 146 (259)
T ss_pred cCCeEE----EEeCCCCCHHHHHHHHH-HHHHH-------cCCeEEEE-eHHHHHHHHH
Confidence 788999 99999999996433222 22222 23445544 5567765543
No 346
>KOG1002|consensus
Probab=80.45 E-value=7.8 Score=38.05 Aligned_cols=104 Identities=16% Similarity=0.124 Sum_probs=65.1
Q ss_pred CCCchhhhhccccccccCcC-----cccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKK-----FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~d-----vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.+-|.|.+.+--+. +..+ -+ ..-+-|.|||.--+--++..+ .+...||++|+-+|. |-.
T Consensus 184 ~LL~fQkE~l~Wl~--~QE~Ss~~GGi----LADEMGMGKTIQtIaLllae~---------~ra~tLVvaP~VAlm-QW~ 247 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLT--SQEESSVAGGI----LADEMGMGKTIQTIALLLAEV---------DRAPTLVVAPTVALM-QWK 247 (791)
T ss_pred cchhhhHHHHHHHH--Hhhhhhhccce----ehhhhccchHHHHHHHHHhcc---------ccCCeeEEccHHHHH-HHH
Confidence 35677776553332 2221 23 355789999976544333322 233499999998865 677
Q ss_pred HHHHHHhcCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHHHhc
Q psy10677 241 AVISIFSRTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIYLQQ 287 (317)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~l~~ 287 (317)
+++..+..+ .++ +.+|-|...+...+.+.+ ++.+|-..+..-..+
T Consensus 248 nEI~~~T~g-slk-v~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk 294 (791)
T KOG1002|consen 248 NEIERHTSG-SLK-VYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRK 294 (791)
T ss_pred HHHHHhccC-ceE-EEEEecccccCCHHHhhcCcEEEEecHHHHHHHHh
Confidence 778887773 344 555666666666666666 788887777665554
No 347
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=80.29 E-value=2.2 Score=37.16 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=32.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|.-++ +.|++|||||.-.+=-+.+.+.+ .+-.+++++ +.|-..++.+.++.+.
T Consensus 18 ~gs~~l----i~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs-~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVL----ISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVS-FEEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEE----EEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEE-SSS-HHHHHHHHHTTT
T ss_pred CCcEEE----EEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 567778 99999999996433333344443 034566665 5556677777776654
No 348
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=80.24 E-value=1.9 Score=44.35 Aligned_cols=72 Identities=8% Similarity=0.071 Sum_probs=44.3
Q ss_pred hhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCC
Q psy10677 144 SYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDG 223 (317)
Q Consensus 144 ~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~ 223 (317)
+.+.+.|++.|-..+ +.-..+|...+...++++ +.|-||||||.++ --+|..+.+. |
T Consensus 157 ~~l~k~lk~~~~~s~-----------i~I~gvPip~~~E~~H~l----i~GttGSGKS~~i-~~LL~~ir~R-------G 213 (732)
T PRK13700 157 KDVARMLKKDGKDSD-----------IRIGDLPIIRDSEIQNFC----LHGTVGAGKSEVI-RRLANYARQR-------G 213 (732)
T ss_pred HHHHHHHHhcCCCCC-----------eeEccccCCcchhhcceE----EeCCCCCCHHHHH-HHHHHHHHHc-------C
Confidence 556666776654434 433455554433788999 9999999999854 5566666543 3
Q ss_pred ceEEEEcCcHHHHHH
Q psy10677 224 PIALVLAPTRELAQQ 238 (317)
Q Consensus 224 ~~alil~PtreLa~Q 238 (317)
-+|+|.=|+.+....
T Consensus 214 drAIIyD~~GeFv~~ 228 (732)
T PRK13700 214 DMVVIYDRSGEFVKS 228 (732)
T ss_pred CeEEEEeCCCchHHH
Confidence 345555555554443
No 349
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=80.23 E-value=22 Score=33.24 Aligned_cols=124 Identities=12% Similarity=0.006 Sum_probs=68.7
Q ss_pred Cchhhhhcccccc--ccC---cCcccccceeccCCChhHHHHHHHHHHHHHcCCCC--------------CCCCCceEEE
Q psy10677 168 GDKESKNWTIPLN--FQA---KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKL--------------EEGDGPIALV 228 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g---~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~--------------~~~~~~~ali 228 (317)
+|.|...|..+.+ .+| +-.+ +.||.|.||+... .-+...+....+. ..+.+|-..+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~L----f~G~~G~GK~~lA-~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALL----FKADSGLGTEQLI-RALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEE----eECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 5667666666552 122 3556 8999999998532 2333445543211 1234688888
Q ss_pred EcCc---HHHHHHHHHHHHHHhc---CCCcEEEEEECCCCHH--HHHHHccC----------cEEEC-cHHHHHHHhcC-
Q psy10677 229 LAPT---RELAQQIQAVISIFSR---TMRIRHACLYGGTSKM--YQVILLRI----------LTSAT-NTSLGIYLQQN- 288 (317)
Q Consensus 229 l~Pt---reLa~Qi~~~~~~l~~---~~~~~~~~~~gg~~~~--~~~~~~~~----------ilv~T-P~~l~~~l~~~- 288 (317)
+.|. .--+.||.+..+.+.. .-+.|++.+....... .+...++. |++++ |.+|+.-+.+.
T Consensus 79 i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 79 LEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred EccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 8883 2246666665555432 2367888776543322 22222222 35544 77888776653
Q ss_pred -CCCCCCCc
Q psy10677 289 -DAHSPCLS 296 (317)
Q Consensus 289 -~~~~~~ld 296 (317)
.+.+..+.
T Consensus 159 ~~~~~~~~~ 167 (325)
T PRK06871 159 QTWLIHPPE 167 (325)
T ss_pred eEEeCCCCC
Confidence 55555554
No 350
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=80.22 E-value=5.2 Score=33.63 Aligned_cols=105 Identities=9% Similarity=0.031 Sum_probs=49.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCC---CCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLE---EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLY 258 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~---~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~ 258 (317)
.|.=++ +.|++|+|||. +++-+..++....+.- ...+.+++++..- .-..++.+.+..+....
T Consensus 31 ~g~l~~----i~g~~g~GKT~-~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E-~~~~~~~~rl~~~~~~~-------- 96 (193)
T PF13481_consen 31 RGELTL----IAGPPGSGKTT-LALQLAAALATGRPFLGELPPRPGRVLYISLE-DSESQIARRLRALLQDY-------- 96 (193)
T ss_dssp TTSEEE----EEECSTSSHHH-HHHHHHHHHHT---TT---------EEEEESS-S-HHHHHHHHHHHHTTS--------
T ss_pred CCeEEE----EEeCCCCCHHH-HHHHHHHHHHhCCccCCcccccCceEEEEecc-CCHHHHHHHHHHHhccc--------
Confidence 455567 89999999995 4455555555322110 1134566666543 33667777777776543
Q ss_pred CCCCHHHHHHHcc-----CcEEE--------Cc---HHHHHHHhc-CCCCCCCCchhHHHhh
Q psy10677 259 GGTSKMYQVILLR-----ILTSA--------TN---TSLGIYLQQ-NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 259 gg~~~~~~~~~~~-----~ilv~--------TP---~~l~~~l~~-~~~~~~~lde~d~l~~ 303 (317)
+......... .+-+. ++ .++.+.+.. ...++.++|=+..+..
T Consensus 97 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~ 155 (193)
T PF13481_consen 97 ---DDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHD 155 (193)
T ss_dssp ----HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--
T ss_pred ---CCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhc
Confidence 1111111110 11111 12 245667777 6788888886666655
No 351
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=80.13 E-value=0.92 Score=35.54 Aligned_cols=23 Identities=13% Similarity=-0.127 Sum_probs=18.2
Q ss_pred HHHHHHhcCCCCCCCCchhHHHh
Q psy10677 280 SLGIYLQQNDAHSPCLSVWRRLQ 302 (317)
Q Consensus 280 ~l~~~l~~~~~~~~~lde~d~l~ 302 (317)
.+.+.+......+.++||||.+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHH
T ss_pred HHHHHHHhcCCeEEEEeChHhcC
Confidence 46677777777889999999963
No 352
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=79.95 E-value=3 Score=48.11 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=44.3
Q ss_pred CCCchhhhhccccccccC--cCcccccceeccCCChhHHHH--H-HHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQA--KKFISVLQKKAEVQSRSVFTY--I-LPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~tGsGKTla~--~-lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.+|+.|.+|+-.++ .+ +-++ ++++.|+|||... + =++.+.+.. .+..++.++||..-|.+..
T Consensus 1019 ~Lt~~Q~~Ai~~il--~~~~~~~~----i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLII--STKDRFVA----VQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHH--hCCCcEEE----EEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHHH
Confidence 35999999999988 55 4455 7799999999655 1 233333322 3678888999988776664
No 353
>KOG1133|consensus
Probab=79.83 E-value=1.3 Score=44.91 Aligned_cols=47 Identities=13% Similarity=-0.033 Sum_probs=35.2
Q ss_pred CCCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 165 KKCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 165 ~~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
.+++.||.+-+..+.. ..|+=-| ..+|||+|||+..+-..+..|...
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgI----fESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGI----FESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeee----eeCCCCCCchHHHHHHHHHHHHHh
Confidence 3449999877655432 2677556 789999999999999998877543
No 354
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=79.81 E-value=22 Score=33.25 Aligned_cols=123 Identities=13% Similarity=0.098 Sum_probs=68.7
Q ss_pred CchhhhhccccccccCc---CcccccceeccCCChhHHHHHHHHHHHHHcCCCC--------------CCCCCceEEEEc
Q psy10677 168 GDKESKNWTIPLNFQAK---KFISVLQKKAEVQSRSVFTYILPALYHILKMPKL--------------EEGDGPIALVLA 230 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~---dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~--------------~~~~~~~alil~ 230 (317)
+|.|...|..++. +|+ -++ +.||.|+|||... .-+...+....+. ..+.+|-..++.
T Consensus 5 yPWl~~~~~~~~~-~~r~~ha~L----f~G~~G~GK~~~A-~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~ 78 (328)
T PRK05707 5 YPWQQSLWQQLAG-RGRHPHAYL----LHGPAGIGKRALA-ERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLE 78 (328)
T ss_pred CCCcHHHHHHHHH-CCCcceeee----eECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe
Confidence 7888888888773 232 456 8999999998532 2234445443211 123468888888
Q ss_pred CcH----HHHHHHHHHHHHHhcC---CCcEEEEEECC--CCHHHHHHHccC---------cEEEC--cHHHHHHHhcC--
Q psy10677 231 PTR----ELAQQIQAVISIFSRT---MRIRHACLYGG--TSKMYQVILLRI---------LTSAT--NTSLGIYLQQN-- 288 (317)
Q Consensus 231 Ptr----eLa~Qi~~~~~~l~~~---~~~~~~~~~gg--~~~~~~~~~~~~---------ilv~T--P~~l~~~l~~~-- 288 (317)
|.. --+.||.+..+.+... -+-|++.+..- ++.......++. +|..| |.+|+.-+.+.
T Consensus 79 ~~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~ 158 (328)
T PRK05707 79 PEEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQ 158 (328)
T ss_pred ccCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhce
Confidence 842 3466777666555432 25777766432 222222222222 23333 56777666543
Q ss_pred CCCCCCCc
Q psy10677 289 DAHSPCLS 296 (317)
Q Consensus 289 ~~~~~~ld 296 (317)
.+.|..++
T Consensus 159 ~~~~~~~~ 166 (328)
T PRK05707 159 QQACPLPS 166 (328)
T ss_pred eeeCCCcC
Confidence 45555554
No 355
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=79.69 E-value=0.92 Score=41.20 Aligned_cols=18 Identities=0% Similarity=-0.055 Sum_probs=16.7
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.++.++ ++||+|||||..
T Consensus 32 ~~~pvL----l~G~~GtGKT~l 49 (272)
T PF12775_consen 32 NGRPVL----LVGPSGTGKTSL 49 (272)
T ss_dssp CTEEEE----EESSTTSSHHHH
T ss_pred cCCcEE----EECCCCCchhHH
Confidence 899999 999999999974
No 356
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=79.37 E-value=4.5 Score=41.42 Aligned_cols=72 Identities=14% Similarity=0.015 Sum_probs=53.7
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
++++-|.+|+.... ..++ +.|..|||||-+..--+...+.... -..-..+.++=|+.-|.++...+.+
T Consensus 2 ~Ln~~Q~~av~~~~----gp~l----V~AGaGsGKT~vlt~Ria~li~~~~----v~p~~Il~vTFTnkAA~em~~Rl~~ 69 (655)
T COG0210 2 KLNPEQREAVLHPD----GPLL----VLAGAGSGKTRVLTERIAYLIAAGG----VDPEQILAITFTNKAAAEMRERLLK 69 (655)
T ss_pred CCCHHHHHHHhcCC----CCeE----EEECCCCCchhhHHHHHHHHHHcCC----cChHHeeeeechHHHHHHHHHHHHH
Confidence 46899999886643 4556 7899999999987777666665431 1122588888899999999999888
Q ss_pred HhcC
Q psy10677 246 FSRT 249 (317)
Q Consensus 246 l~~~ 249 (317)
+...
T Consensus 70 ~~~~ 73 (655)
T COG0210 70 LLGL 73 (655)
T ss_pred HhCc
Confidence 8764
No 357
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=78.92 E-value=1.2 Score=34.73 Aligned_cols=26 Identities=4% Similarity=-0.031 Sum_probs=18.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
.++.++ +.||+|+|||. .+--+...+
T Consensus 18 ~~~~v~----i~G~~G~GKT~-l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLL----LYGPPGTGKTT-LARAIANEL 43 (151)
T ss_pred CCCeEE----EECCCCCCHHH-HHHHHHHHh
Confidence 367788 99999999994 333444444
No 358
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=78.81 E-value=1.1 Score=40.48 Aligned_cols=25 Identities=0% Similarity=-0.207 Sum_probs=20.2
Q ss_pred hccccccccCcCcccccceeccCCChhHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+...+. .|++++ +.||+|+|||...
T Consensus 14 ~l~~l~--~g~~vL----L~G~~GtGKT~lA 38 (262)
T TIGR02640 14 ALRYLK--SGYPVH----LRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHh--cCCeEE----EEcCCCCCHHHHH
Confidence 344555 889999 9999999999754
No 359
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=78.77 E-value=7.1 Score=35.45 Aligned_cols=85 Identities=8% Similarity=0.048 Sum_probs=43.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc-H-HHHHHHHHHHHHHhcCCCcEEEEEEC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT-R-ELAQQIQAVISIFSRTMRIRHACLYG 259 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt-r-eLa~Qi~~~~~~l~~~~~~~~~~~~g 259 (317)
.+..+. +++++|+|||..+..-... +... ...-++|-+-+ | ..+.| ++.+...+++.+.....
T Consensus 74 ~~~~i~----~~G~~g~GKTtl~~~l~~~-l~~~------~~~v~~i~~D~~ri~~~~q----l~~~~~~~~~~~~~~~~ 138 (270)
T PRK06731 74 EVQTIA----LIGPTGVGKTTTLAKMAWQ-FHGK------KKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVIAVRD 138 (270)
T ss_pred CCCEEE----EECCCCCcHHHHHHHHHHH-HHHc------CCeEEEEecCCCCHHHHHH----HHHHhhhcCceEEecCC
Confidence 456667 8999999999876543322 2221 12233343323 2 23333 44455555666554432
Q ss_pred CCCHHHHHHHcc------CcEEECcHHH
Q psy10677 260 GTSKMYQVILLR------ILTSATNTSL 281 (317)
Q Consensus 260 g~~~~~~~~~~~------~ilv~TP~~l 281 (317)
..........++ .++|=|||+.
T Consensus 139 ~~~l~~~l~~l~~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 139 EAAMTRALTYFKEEARVDYILIDTAGKN 166 (270)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 222222222222 1799999987
No 360
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=78.25 E-value=8.8 Score=29.49 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=39.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.+.||++++.+-+.++.+.+++ .+..+..+.|+.+..+....+.. ++++|.
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~ 86 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD 86 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 56799999999999888888877 35778899999886555443322 677775
No 361
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=78.16 E-value=4.2 Score=46.11 Aligned_cols=65 Identities=9% Similarity=0.141 Sum_probs=43.8
Q ss_pred CCCchhhhhccccccccC--cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQA--KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.+++-|.+|+-.++ .+ +=++ +++..|+|||... =.++..+... ....+..++.++||.--|....
T Consensus 967 ~Lt~~Q~~Av~~il--~s~dr~~~----I~G~AGTGKTT~l-~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMIL--ESTDRFTV----VQGYAGVGKTTQF-RAVMSAVNTL---PESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHH--hCCCcEEE----EEeCCCCCHHHHH-HHHHHHHHHh---hcccCceEEEECCcHHHHHHHH
Confidence 45999999999999 64 4556 7899999999653 1222222211 1123567888999987666554
No 362
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=78.11 E-value=4.2 Score=44.51 Aligned_cols=58 Identities=17% Similarity=0.102 Sum_probs=43.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
.+.+++ +.|-.|||||.+..-=++..|.... .-.-...||++-|+.=|..+...+..-
T Consensus 15 ~~~~~l----veASAGSGKT~vL~~r~lrlLl~~~---~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVL----VEASAGTGKTFVLAERVLRLLLEGG---PLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEE----EEEcCCCCchhHHHHHHHHHHhhcC---CCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 677899 9999999999998888888887631 113358999999986666665555443
No 363
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=78.02 E-value=3.5 Score=35.94 Aligned_cols=52 Identities=13% Similarity=0.060 Sum_probs=29.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
.|..++ +.|++|+|||....--+.+.+.+ +-.++++. +.+.+.++.+.++.+
T Consensus 19 ~G~~~~----i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is-~e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVA----VTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVT-TEESRESIIRQAAQF 70 (229)
T ss_pred CCeEEE----EECCCCCChHHHHHHHHHHHHhc--------CCeEEEEE-ccCCHHHHHHHHHHh
Confidence 577788 99999999986433222233321 33455554 344555665555444
No 364
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=77.69 E-value=2.8 Score=36.78 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=29.5
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc---CcHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA---PTRELAQQ 238 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~---PtreLa~Q 238 (317)
.|.-++ +.|++|+||| +|++-++.+...+ .+..+++++ |..+++.+
T Consensus 12 ~G~l~l----I~G~~G~GKT-~~~~~~~~~~~~~------~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 12 PGDLII----IAARPSMGKT-AFALNIAENIAKK------QGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred CCeEEE----EEeCCCCCHH-HHHHHHHHHHHHh------CCCceEEEeCCCCHHHHHHH
Confidence 566677 9999999999 5555555555442 145677776 34444443
No 365
>PRK00254 ski2-like helicase; Provisional
Probab=77.67 E-value=1.2 Score=46.23 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=24.5
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCc
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLP 84 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~ 84 (317)
+||+|++ .|++|.++|||| ++|+|+|
T Consensus 301 hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnip 338 (720)
T PRK00254 301 HHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLP 338 (720)
T ss_pred eCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCC
Confidence 8999998 999999999999 9999994
No 366
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=77.49 E-value=4.9 Score=36.75 Aligned_cols=22 Identities=5% Similarity=-0.162 Sum_probs=15.4
Q ss_pred eeccCCChhHHHHHHHHHHHHHc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+.||.|+|||.+.. -+...+..
T Consensus 29 ~~Gp~G~Gktt~a~-~lA~~l~~ 50 (325)
T COG0470 29 FYGPPGVGKTTAAL-ALAKELLC 50 (325)
T ss_pred eeCCCCCCHHHHHH-HHHHHHhC
Confidence 99999999997643 33444543
No 367
>KOG0926|consensus
Probab=77.47 E-value=4.9 Score=41.66 Aligned_cols=106 Identities=13% Similarity=0.077 Sum_probs=56.8
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCC-CCCc-eEEEEcCcHHHHHHHHHHHH-HHhc-CCCcEEEEE
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE-GDGP-IALVLAPTRELAQQIQAVIS-IFSR-TMRIRHACL 257 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~-~~~~-~alil~PtreLa~Qi~~~~~-~l~~-~~~~~~~~~ 257 (317)
..-=|+ +||.||||||.- +|= .|....-.+. ...| -.=|--|-|--|..+.+.+. .++. ...+..-.-
T Consensus 270 ~n~vvI----IcGeTGsGKTTQ--vPQ--FLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR 341 (1172)
T KOG0926|consen 270 ENPVVI----ICGETGSGKTTQ--VPQ--FLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR 341 (1172)
T ss_pred cCCeEE----EecCCCCCcccc--chH--HHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE
Confidence 334467 999999999973 232 2222221111 1123 22234476766655554433 3333 112333344
Q ss_pred ECCCCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhHH
Q psy10677 258 YGGTSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWRR 300 (317)
Q Consensus 258 ~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~ 300 (317)
+.|+-.. -.+|..-|-|-|+.-|+. ...+...||||+.
T Consensus 342 fd~ti~e-----~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 342 FDGTIGE-----DTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHE 383 (1172)
T ss_pred eccccCC-----CceeEEecchHHHHHHHHhHhhhhceeEEechhhh
Confidence 4443321 123889999999876665 3666778999863
No 368
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.30 E-value=7.4 Score=36.28 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=47.6
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcC-c-HHHHHHHHHHHHHHhcCCCcEEEE-EECCCCHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAP-T-RELAQQIQAVISIFSRTMRIRHAC-LYGGTSKMYQVI 268 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~P-t-reLa~Qi~~~~~~l~~~~~~~~~~-~~gg~~~~~~~~ 268 (317)
+++-+|+|||.+.. -+..++.. .|-++++.+- | |+=|. ++++-|++..|+.++. -+|+.+..--..
T Consensus 144 ~vGVNG~GKTTTIa-KLA~~l~~-------~g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAaVafD 212 (340)
T COG0552 144 FVGVNGVGKTTTIA-KLAKYLKQ-------QGKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAAVAFD 212 (340)
T ss_pred EEecCCCchHhHHH-HHHHHHHH-------CCCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHHHHHH
Confidence 88999999997642 22223332 3445555442 3 77664 3455566666777665 345555443333
Q ss_pred HccC--------cEEECcHHHH
Q psy10677 269 LLRI--------LTSATNTSLG 282 (317)
Q Consensus 269 ~~~~--------ilv~TP~~l~ 282 (317)
.+.. ++|=|.|||.
T Consensus 213 Ai~~Akar~~DvvliDTAGRLh 234 (340)
T COG0552 213 AIQAAKARGIDVVLIDTAGRLH 234 (340)
T ss_pred HHHHHHHcCCCEEEEeCccccc
Confidence 3322 6899999996
No 369
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=77.25 E-value=4.2 Score=38.34 Aligned_cols=55 Identities=9% Similarity=0.078 Sum_probs=35.1
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCC--CCCCceEEEEcCcHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLE--EGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~--~~~~~~alil~PtreLa~Qi~~ 241 (317)
.|+-++ +.+|+||||| |..+.+-+.|-..-+.- .+...+.+=+.-|..|-+-..+
T Consensus 64 aGrgiL----i~GppgTGKT-AlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~qa~Rr 120 (450)
T COG1224 64 AGRGIL----IVGPPGTGKT-ALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRR 120 (450)
T ss_pred cccEEE----EECCCCCcHH-HHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHHHHHH
Confidence 789999 9999999999 55566666665432211 1233555556666666544433
No 370
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=76.71 E-value=7.4 Score=42.67 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=44.4
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR 248 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~ 248 (317)
..++++ +.|+-|||||....--++..+.... ..-..++|+-|+.=|..+...+...+.
T Consensus 9 p~~~~~----~~a~agsgkt~~l~~~~~~~~~~~~-----~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 9 PKTSAW----VSANAGSGKTHVLTQRVIRLLLNGV-----PPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCCEE----EEEECCCCHHHHHHHHHHHHHHcCC-----CCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 446788 9999999999988777777665421 223789999999888888877776654
No 371
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=76.70 E-value=18 Score=30.57 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=52.7
Q ss_pred cceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEE-----c-CcHHHHHHHHHHHHHHhcCCCcEEEEEECCC--
Q psy10677 190 LQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVL-----A-PTRELAQQIQAVISIFSRTMRIRHACLYGGT-- 261 (317)
Q Consensus 190 ~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil-----~-PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~-- 261 (317)
+|+..++|.|||.+.+--.+..+.. |-+++|+ . .+-|+. .++++ ++.......|.
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~~--------g~~v~ivQFlKg~~~~GE~~-----~l~~~----~~~~~~~g~g~~~ 70 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALGH--------GKKVGVIQFIKGAWPNGERA-----AFEPH----GVEFQVMGTGFTW 70 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHC--------CCeEEEEEEecCCcccChHH-----HHHhc----CcEEEECCCCCee
Confidence 3478899999998876655554432 4556555 1 233321 12222 34433322221
Q ss_pred ---CHHHHHHHccCcEEECcHHHHHHHhcCCCCCCCCchhHHHhhhcCCcHH
Q psy10677 262 ---SKMYQVILLRILTSATNTSLGIYLQQNDAHSPCLSVWRRLQDILGLTEE 310 (317)
Q Consensus 262 ---~~~~~~~~~~~ilv~TP~~l~~~l~~~~~~~~~lde~d~l~~~~gf~~~ 310 (317)
+..+.....+.. =....+.+..+..++++|||.--.++ .|+-+.
T Consensus 71 ~~~~~~~~~~~~~~~----~~~a~~~l~~~~~DlvVLDEi~~A~~-~gli~~ 117 (173)
T TIGR00708 71 ETQNREADTAIAKAA----WQHAKEMLADPELDLVLLDELTYALK-YGYLDV 117 (173)
T ss_pred cCCCcHHHHHHHHHH----HHHHHHHHhcCCCCEEEehhhHHHHH-CCCcCH
Confidence 111111111110 01223556668999999999988888 776554
No 372
>KOG0392|consensus
Probab=76.23 E-value=8.1 Score=41.88 Aligned_cols=127 Identities=12% Similarity=0.015 Sum_probs=77.2
Q ss_pred CCchhhhhcc--ccccccCcCcccccceeccCCChhHHH-HHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 167 CGDKESKNWT--IPLNFQAKKFISVLQKKAEVQSRSVFT-YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 167 ~t~iQ~~~ip--~~l~~~g~dvi~~~~~~a~tGsGKTla-~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
+...|++.+. ..++.-+-+-| .|-.-|=|||+- .++-...+..+.....+....-+||+||. -|+---..++
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGI----LcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~ 1050 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGI----LCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEV 1050 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccce----eeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHH
Confidence 3445666542 23322334556 788999999994 44545555554322233333448999995 5777777778
Q ss_pred HHHhcCCCcEEEEEECCCC-HHHHHHHccC--cEEECcHHHH---HHHhcCCCCCCCCchhHH
Q psy10677 244 SIFSRTMRIRHACLYGGTS-KMYQVILLRI--LTSATNTSLG---IYLQQNDAHSPCLSVWRR 300 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~-~~~~~~~~~~--ilv~TP~~l~---~~l~~~~~~~~~lde~d~ 300 (317)
++|... +++...+|+-. +.......++ |+|+.=..+- +++.+..-++.+|||-+.
T Consensus 1051 ~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHV 1111 (1549)
T KOG0392|consen 1051 KKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHV 1111 (1549)
T ss_pred HHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhcccceEEecCcce
Confidence 888776 56666666533 3333344433 7777655543 566777888899998543
No 373
>PRK08727 hypothetical protein; Validated
Probab=76.17 E-value=6.6 Score=34.62 Aligned_cols=51 Identities=8% Similarity=0.072 Sum_probs=31.3
Q ss_pred CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q psy10677 185 KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR 248 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~ 248 (317)
.++ +.|++|+|||.... .+...+.+ .+.+++++ |..++.....+.++.+.+
T Consensus 43 ~l~----l~G~~G~GKThL~~-a~~~~~~~-------~~~~~~y~-~~~~~~~~~~~~~~~l~~ 93 (233)
T PRK08727 43 WLY----LSGPAGTGKTHLAL-ALCAAAEQ-------AGRSSAYL-PLQAAAGRLRDALEALEG 93 (233)
T ss_pred eEE----EECCCCCCHHHHHH-HHHHHHHH-------cCCcEEEE-eHHHhhhhHHHHHHHHhc
Confidence 467 99999999995433 33333332 24566665 566677666666655543
No 374
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=76.09 E-value=2.7 Score=39.86 Aligned_cols=37 Identities=5% Similarity=0.092 Sum_probs=23.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA 230 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~ 230 (317)
.|+-++ +.+|+||||| |..+.+-..|.. .-|.+-+-.
T Consensus 49 aGr~iL----iaGppGtGKT-AlA~~ia~eLG~-------~~PF~~isg 85 (398)
T PF06068_consen 49 AGRAIL----IAGPPGTGKT-ALAMAIAKELGE-------DVPFVSISG 85 (398)
T ss_dssp TT-EEE----EEE-TTSSHH-HHHHHHHHHCTT-------TS-EEEEEG
T ss_pred cCcEEE----EeCCCCCCch-HHHHHHHHHhCC-------CCCeeEccc
Confidence 688999 9999999999 445566555543 346666544
No 375
>PLN02165 adenylate isopentenyltransferase
Probab=75.61 E-value=2 Score=40.08 Aligned_cols=24 Identities=13% Similarity=-0.000 Sum_probs=18.5
Q ss_pred cccccCcCcccccceeccCCChhHHHHH
Q psy10677 178 PLNFQAKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 178 ~l~~~g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
+.|..|+-++ +.||||||||....
T Consensus 38 ~~~~~g~iiv----IiGPTGSGKStLA~ 61 (334)
T PLN02165 38 EQNCKDKVVV----IMGATGSGKSRLSV 61 (334)
T ss_pred ccCCCCCEEE----EECCCCCcHHHHHH
Confidence 3544777788 99999999997553
No 376
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=75.60 E-value=25 Score=32.89 Aligned_cols=124 Identities=9% Similarity=-0.036 Sum_probs=71.6
Q ss_pred Cchhhhhcccccc--ccC---cCcccccceeccCCChhHHHHHHHHHHHHHcCCCC--------------CCCCCceEEE
Q psy10677 168 GDKESKNWTIPLN--FQA---KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKL--------------EEGDGPIALV 228 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g---~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~--------------~~~~~~~ali 228 (317)
+|.|...|..+.+ .+| .-.+ +.||.|+||+... ..+...+....+. ..+.+|-..+
T Consensus 4 yPWl~~~~~~l~~~~~~~rl~HA~L----f~G~~G~Gk~~lA-~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~ 78 (334)
T PRK07993 4 YPWLRPDYEQLVGSYQAGRGHHALL----IQALPGMGDDALI-YALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYT 78 (334)
T ss_pred CCCChHHHHHHHHHHHcCCcceEEe----eECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEE
Confidence 6777777766653 022 2566 8999999998532 3334445443211 1245688888
Q ss_pred EcCcH----HHHHHHHHHHHHHhcC---CCcEEEEEECCCCHH--HHHHHccC----------cEEEC-cHHHHHHHhcC
Q psy10677 229 LAPTR----ELAQQIQAVISIFSRT---MRIRHACLYGGTSKM--YQVILLRI----------LTSAT-NTSLGIYLQQN 288 (317)
Q Consensus 229 l~Ptr----eLa~Qi~~~~~~l~~~---~~~~~~~~~gg~~~~--~~~~~~~~----------ilv~T-P~~l~~~l~~~ 288 (317)
+.|.. --+.||.+..+.+... -+-|++.+..-.... .....++. |+++. |.+|+.-+.+.
T Consensus 79 i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 79 LTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred EecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 88853 3467777777666532 257777775432222 22222222 45554 78888776653
Q ss_pred --CCCCCCCc
Q psy10677 289 --DAHSPCLS 296 (317)
Q Consensus 289 --~~~~~~ld 296 (317)
.+.+..+.
T Consensus 159 Cq~~~~~~~~ 168 (334)
T PRK07993 159 CRLHYLAPPP 168 (334)
T ss_pred cccccCCCCC
Confidence 45555554
No 377
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=75.53 E-value=7.8 Score=34.80 Aligned_cols=18 Identities=0% Similarity=-0.151 Sum_probs=14.7
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-++ +.|++|+|||.-
T Consensus 35 ~gs~~l----I~G~pGtGKT~l 52 (259)
T TIGR03878 35 AYSVIN----ITGVSDTGKSLM 52 (259)
T ss_pred CCcEEE----EEcCCCCCHHHH
Confidence 566667 999999999963
No 378
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=75.52 E-value=8.7 Score=34.40 Aligned_cols=17 Identities=6% Similarity=-0.005 Sum_probs=15.5
Q ss_pred cCcCcccccceeccCCChhHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVF 202 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTl 202 (317)
.|.-++ +.|+.|+|||.
T Consensus 15 ~Gqr~~----I~G~~G~GKTT 31 (249)
T cd01128 15 KGQRGL----IVAPPKAGKTT 31 (249)
T ss_pred CCCEEE----EECCCCCCHHH
Confidence 788888 99999999995
No 379
>PRK08116 hypothetical protein; Validated
Probab=75.44 E-value=5.9 Score=35.85 Aligned_cols=47 Identities=9% Similarity=0.130 Sum_probs=31.3
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
..++ +.|++|+|||.... .+.+.+... +.. ++..+..+|...+...+
T Consensus 115 ~gl~----l~G~~GtGKThLa~-aia~~l~~~-------~~~-v~~~~~~~ll~~i~~~~ 161 (268)
T PRK08116 115 VGLL----LWGSVGTGKTYLAA-CIANELIEK-------GVP-VIFVNFPQLLNRIKSTY 161 (268)
T ss_pred ceEE----EECCCCCCHHHHHH-HHHHHHHHc-------CCe-EEEEEHHHHHHHHHHHH
Confidence 3478 99999999996543 566666642 223 34556778887776543
No 380
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=75.28 E-value=1.9 Score=36.29 Aligned_cols=16 Identities=6% Similarity=-0.170 Sum_probs=12.2
Q ss_pred eeccCCChhHH-HHHHH
Q psy10677 192 KKAEVQSRSVF-TYILP 207 (317)
Q Consensus 192 ~~a~tGsGKTl-a~~lp 207 (317)
..+|||+|||. |-.+.
T Consensus 8 l~GpsGvGKT~la~~la 24 (171)
T PF07724_consen 8 LAGPSGVGKTELAKALA 24 (171)
T ss_dssp EESSTTSSHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH
Confidence 89999999994 44443
No 381
>PRK07952 DNA replication protein DnaC; Validated
Probab=75.16 E-value=7 Score=34.89 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=29.5
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
..++ +.+++|+|||.... .+..++... +..+++ ++..+|...+...
T Consensus 100 ~~~~----l~G~~GtGKThLa~-aia~~l~~~-------g~~v~~-it~~~l~~~l~~~ 145 (244)
T PRK07952 100 ASFI----FSGKPGTGKNHLAA-AICNELLLR-------GKSVLI-ITVADIMSAMKDT 145 (244)
T ss_pred ceEE----EECCCCCCHHHHHH-HHHHHHHhc-------CCeEEE-EEHHHHHHHHHHH
Confidence 3567 99999999996443 455555542 344444 4677787666543
No 382
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=74.75 E-value=20 Score=37.59 Aligned_cols=127 Identities=14% Similarity=0.016 Sum_probs=77.7
Q ss_pred CCchhhhhccccc---cccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPL---NFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 167 ~t~iQ~~~ip~~l---~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
+.+.|...+.-+. ...+.+-+ +...-|-|||+.-+.-+.. +.... ....+.++|+||+. ++.+..+.+
T Consensus 339 lr~yq~~g~~wl~~~l~~~~~~~i----laD~mglGKTiq~i~~l~~-~~~~~---~~~~~~~liv~p~s-~~~nw~~e~ 409 (866)
T COG0553 339 LRPYQLEGVNWLSELLRSNLLGGI----LADDMGLGKTVQTIALLLS-LLESI---KVYLGPALIVVPAS-LLSNWKREF 409 (866)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCc----ccccccchhHHHHHHHHHh-hhhcc---cCCCCCeEEEecHH-HHHHHHHHH
Confidence 3666777664433 22366677 7789999999765444433 22211 11256899999974 555667777
Q ss_pred HHHhcCCCcEEEEEECCCCH----HHHHHHc--------cCcEEECcHHHHH------HHhcCCCCCCCCchhHHHhh
Q psy10677 244 SIFSRTMRIRHACLYGGTSK----MYQVILL--------RILTSATNTSLGI------YLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~----~~~~~~~--------~~ilv~TP~~l~~------~l~~~~~~~~~lde~d~l~~ 303 (317)
.++...... +...+|.... .+....+ ..++++|=+.+.. .+..-.....++|||.++-.
T Consensus 410 ~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 410 EKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred hhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhh
Confidence 777765432 5566665541 2333222 3478888887766 24445667788899988544
No 383
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=74.66 E-value=2 Score=39.26 Aligned_cols=19 Identities=0% Similarity=-0.167 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+.+++ +.||+|||||...
T Consensus 57 ~~~~vl----l~G~pGTGKT~lA 75 (284)
T TIGR02880 57 PTLHMS----FTGNPGTGKTTVA 75 (284)
T ss_pred CCceEE----EEcCCCCCHHHHH
Confidence 456788 9999999999754
No 384
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=74.53 E-value=1.7 Score=33.56 Aligned_cols=12 Identities=8% Similarity=-0.219 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.|++|||||..
T Consensus 4 I~G~~gsGKST~ 15 (121)
T PF13207_consen 4 ISGPPGSGKSTL 15 (121)
T ss_dssp EEESTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 889999999964
No 385
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.51 E-value=1.6 Score=39.49 Aligned_cols=19 Identities=11% Similarity=-0.153 Sum_probs=13.5
Q ss_pred eeccCCChhHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYH 211 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~ 211 (317)
+.++|||||+.+. ..++.+
T Consensus 132 iVGaTGSGKSTtm-AaMi~y 150 (375)
T COG5008 132 IVGATGSGKSTTM-AAMIGY 150 (375)
T ss_pred EECCCCCCchhhH-HHHhcc
Confidence 8899999998653 344443
No 386
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=74.51 E-value=1.7 Score=36.91 Aligned_cols=20 Identities=5% Similarity=-0.074 Sum_probs=14.1
Q ss_pred CcCcccccceeccCCChhHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYIL 206 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~l 206 (317)
...++ ++||.|||||.-|..
T Consensus 3 ~~~vl----L~Gps~SGKTaLf~~ 22 (181)
T PF09439_consen 3 RPTVL----LVGPSGSGKTALFSQ 22 (181)
T ss_dssp --EEE----EE-STTSSHHHHHHH
T ss_pred CceEE----EEcCCCCCHHHHHHH
Confidence 45677 999999999987644
No 387
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=74.48 E-value=7.5 Score=41.45 Aligned_cols=40 Identities=5% Similarity=0.009 Sum_probs=28.0
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRE 234 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptre 234 (317)
.+.+ +.|+||||||.....=+.+.+.. .+++++|+=|-++
T Consensus 476 ~n~~----I~G~TGSGKS~l~~~li~q~~~~-------~~~~v~IiD~g~s 515 (893)
T TIGR03744 476 AHLL----ILGPTGAGKSATLTNLLMQVMAV-------HRPRLFIVEAGNS 515 (893)
T ss_pred ccEE----EECCCCCCHHHHHHHHHHHHHHh-------cCCEEEEEcCCCC
Confidence 4567 99999999997654433333322 2679999988776
No 388
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=74.44 E-value=2.3 Score=39.93 Aligned_cols=32 Identities=6% Similarity=-0.063 Sum_probs=21.7
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
++-+.+.+..+.. .+.+++ ++++||||||...
T Consensus 164 ~~~~~~~L~~~v~-~~~~il----i~G~tGsGKTTll 195 (340)
T TIGR03819 164 PPGVARLLRAIVA-ARLAFL----ISGGTGSGKTTLL 195 (340)
T ss_pred CHHHHHHHHHHHh-CCCeEE----EECCCCCCHHHHH
Confidence 3344444444442 677999 9999999998643
No 389
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=74.42 E-value=15 Score=34.89 Aligned_cols=91 Identities=10% Similarity=0.053 Sum_probs=51.1
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.|.=++ +.|++|+|||.-. +-+...+.. .+-.++++.- .|-..|+....+.+.-.. .-..++...
T Consensus 81 ~GslvL----I~G~pG~GKStLl-lq~a~~~a~-------~g~~VlYvs~-EEs~~qi~~Ra~rlg~~~--~~l~l~~e~ 145 (372)
T cd01121 81 PGSVIL----IGGDPGIGKSTLL-LQVAARLAK-------RGGKVLYVSG-EESPEQIKLRADRLGIST--ENLYLLAET 145 (372)
T ss_pred CCeEEE----EEeCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEEC-CcCHHHHHHHHHHcCCCc--ccEEEEccC
Confidence 345566 8999999999643 333333332 1346777654 455667766665553211 111122222
Q ss_pred CHHHHHHHccCcEEECcHHHHHHHhcCCCCCCCCchhHHHh
Q psy10677 262 SKMYQVILLRILTSATNTSLGIYLQQNDAHSPCLSVWRRLQ 302 (317)
Q Consensus 262 ~~~~~~~~~~~ilv~TP~~l~~~l~~~~~~~~~lde~d~l~ 302 (317)
+ ...+.+.+.....++.++|++..+.
T Consensus 146 ~---------------le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 146 N---------------LEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred c---------------HHHHHHHHHhcCCcEEEEcchHHhh
Confidence 2 2345556666677888888777664
No 390
>KOG0989|consensus
Probab=74.33 E-value=1.3 Score=40.68 Aligned_cols=17 Identities=12% Similarity=-0.191 Sum_probs=14.1
Q ss_pred eeccCCChhHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPA 208 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~ 208 (317)
..||+|+|||-+.++-.
T Consensus 62 FyGPpGTGKTStalafa 78 (346)
T KOG0989|consen 62 FYGPPGTGKTSTALAFA 78 (346)
T ss_pred eeCCCCCcHhHHHHHHH
Confidence 89999999998776543
No 391
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=73.98 E-value=6.8 Score=34.23 Aligned_cols=43 Identities=9% Similarity=0.048 Sum_probs=27.1
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
+.||+|+|||. .+-.+.+.+.+. ..+.+++++. ..+....+.+
T Consensus 39 l~G~~G~GKTH-LL~Ai~~~~~~~-----~~~~~v~y~~-~~~f~~~~~~ 81 (219)
T PF00308_consen 39 LYGPSGLGKTH-LLQAIANEAQKQ-----HPGKRVVYLS-AEEFIREFAD 81 (219)
T ss_dssp EEESTTSSHHH-HHHHHHHHHHHH-----CTTS-EEEEE-HHHHHHHHHH
T ss_pred EECCCCCCHHH-HHHHHHHHHHhc-----cccccceeec-HHHHHHHHHH
Confidence 99999999998 455666666643 2355677664 3455444433
No 392
>KOG0745|consensus
Probab=73.88 E-value=1.6 Score=42.01 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=18.1
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
+--||+ +.+|||||||+-. --|.++.
T Consensus 225 eKSNvL----llGPtGsGKTlla--qTLAr~l 250 (564)
T KOG0745|consen 225 EKSNVL----LLGPTGSGKTLLA--QTLARVL 250 (564)
T ss_pred ecccEE----EECCCCCchhHHH--HHHHHHh
Confidence 445788 9999999999643 3344444
No 393
>PRK09354 recA recombinase A; Provisional
Probab=73.63 E-value=10 Score=35.77 Aligned_cols=43 Identities=12% Similarity=-0.002 Sum_probs=26.5
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELA 236 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa 236 (317)
.|+=+. +.+|+|||||.-.+--+.+ ..+ .+..++++..-..+-
T Consensus 59 ~G~Ite----I~G~~GsGKTtLal~~~~~-~~~-------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 59 RGRIVE----IYGPESSGKTTLALHAIAE-AQK-------AGGTAAFIDAEHALD 101 (349)
T ss_pred CCeEEE----EECCCCCCHHHHHHHHHHH-HHH-------cCCcEEEECCccchH
Confidence 345555 9999999999654433333 322 256777776554444
No 394
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=73.20 E-value=4.5 Score=35.29 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=25.5
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRE 234 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptre 234 (317)
++.+. +.|.||||||... --+++.+.+. .+...+|+=|.-|
T Consensus 23 ~~H~~----I~G~TGsGKS~~~-~~ll~~l~~~------~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIA----IFGTTGSGKSNTV-KVLLEELLKK------KGAKVIIFDPHGE 63 (229)
T ss_pred cceEE----EECCCCCCHHHHH-HHHHHHHHhc------CCCCEEEEcCCCc
Confidence 46677 9999999999543 4455666521 2345555555544
No 395
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=72.86 E-value=2 Score=39.69 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=16.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.+++ ++++||||||...
T Consensus 143 ~~~~il----i~G~tGsGKTTll 161 (308)
T TIGR02788 143 SRKNII----ISGGTGSGKTTFL 161 (308)
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 788999 9999999999643
No 396
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=72.78 E-value=12 Score=35.98 Aligned_cols=18 Identities=6% Similarity=0.014 Sum_probs=16.1
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-+. +.||+|+|||..
T Consensus 167 ~Gq~~~----IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGL----IVAPPKAGKTVL 184 (415)
T ss_pred CCCEEE----EECCCCCChhHH
Confidence 788899 999999999964
No 397
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=72.73 E-value=19 Score=29.97 Aligned_cols=99 Identities=13% Similarity=-0.035 Sum_probs=53.6
Q ss_pred cceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEE---Ec---CcHHHHHHHHHHHHHHhcCCCcEEEEEECC---
Q psy10677 190 LQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV---LA---PTRELAQQIQAVISIFSRTMRIRHACLYGG--- 260 (317)
Q Consensus 190 ~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~ali---l~---PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg--- 260 (317)
+|+-.++|.|||.+.+--.+..+.. |.++++ += .+-|+ ..++++ -++.....-.+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~--------g~~v~~vQFlKg~~~~gE~-----~~l~~l---~~v~~~~~g~~~~~ 68 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGH--------GYRVGVVQFLKGGWKYGEL-----KALERL---PNIEIHRMGRGFFW 68 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEEeCCCCccCHH-----HHHHhC---CCcEEEECCCCCcc
Confidence 4577889999999887666665543 456666 22 23342 223333 13443332111
Q ss_pred --CCHHHHHHHccCcEEECcHHHHHHHhcCCCCCCCCchhHHHhhhcCCcH
Q psy10677 261 --TSKMYQVILLRILTSATNTSLGIYLQQNDAHSPCLSVWRRLQDILGLTE 309 (317)
Q Consensus 261 --~~~~~~~~~~~~ilv~TP~~l~~~l~~~~~~~~~lde~d~l~~~~gf~~ 309 (317)
.+..+.....+.. =....+.+..+..++++|||.--.++ .|+.+
T Consensus 69 ~~~~~~~~~~~a~~~----~~~a~~~~~~~~~dLlVLDEi~~a~~-~gli~ 114 (159)
T cd00561 69 TTENDEEDIAAAAEG----WAFAKEAIASGEYDLVILDEINYALG-YGLLD 114 (159)
T ss_pred CCCChHHHHHHHHHH----HHHHHHHHhcCCCCEEEEechHhHhh-CCCCC
Confidence 1222222221111 01223556678999999999888777 66654
No 398
>PHA02533 17 large terminase protein; Provisional
Probab=72.69 E-value=11 Score=37.76 Aligned_cols=69 Identities=10% Similarity=-0.082 Sum_probs=52.6
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|.|...+-.+. .++-.+ +..+-..|||.+...-++...... .+..+++++|+++-|..+++.++.+.
T Consensus 61 ~p~Q~~i~~~~~--~~R~~i----i~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 61 RDYQKDMLKIMH--KNRFNA----CNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred cHHHHHHHHHHh--cCeEEE----EEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 889999887765 566566 778889999998776555444432 25699999999999999988887654
Q ss_pred c
Q psy10677 248 R 248 (317)
Q Consensus 248 ~ 248 (317)
.
T Consensus 129 e 129 (534)
T PHA02533 129 E 129 (534)
T ss_pred H
Confidence 4
No 399
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=72.39 E-value=5.8 Score=41.61 Aligned_cols=29 Identities=10% Similarity=-0.040 Sum_probs=18.6
Q ss_pred EECcHHHHHHHhcC--CCCCCCCchhHHHhh
Q psy10677 275 SATNTSLGIYLQQN--DAHSPCLSVWRRLQD 303 (317)
Q Consensus 275 v~TP~~l~~~l~~~--~~~~~~lde~d~l~~ 303 (317)
-..||++.+.+... .-.+..+||+|++..
T Consensus 398 g~~~g~i~~~l~~~~~~~~villDEidk~~~ 428 (775)
T TIGR00763 398 GAMPGRIIQGLKKAKTKNPLFLLDEIDKIGS 428 (775)
T ss_pred CCCCchHHHHHHHhCcCCCEEEEechhhcCC
Confidence 34578887766542 223677899988853
No 400
>PRK05642 DNA replication initiation factor; Validated
Probab=72.36 E-value=9 Score=33.80 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=27.3
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
..++ +.|++|+|||.- +-.+.+.+... +-+++++ +..++......
T Consensus 46 ~~l~----l~G~~G~GKTHL-l~a~~~~~~~~-------~~~v~y~-~~~~~~~~~~~ 90 (234)
T PRK05642 46 SLIY----LWGKDGVGRSHL-LQAACLRFEQR-------GEPAVYL-PLAELLDRGPE 90 (234)
T ss_pred CeEE----EECCCCCCHHHH-HHHHHHHHHhC-------CCcEEEe-eHHHHHhhhHH
Confidence 4566 899999999965 33444444421 3456654 45677655433
No 401
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=72.30 E-value=0.42 Score=40.54 Aligned_cols=56 Identities=20% Similarity=0.061 Sum_probs=27.4
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEE
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRH 254 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~ 254 (317)
++|+-|-||+.+.-+.+...+.. ....++|-+|+.+=++.+++.+..-++..+.+.
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~-------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~ 57 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQK-------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKE 57 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS------------EEEE-SS--S-HHHHHCC-----------
T ss_pred ccCCCCCCHHHHHHHHHHHHHHh-------cCceEEEecCCHHHHHHHHHHHHhhcccccccc
Confidence 68999999998877755332221 236899999999999888887776666555443
No 402
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=72.26 E-value=5.7 Score=39.18 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=36.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|+-++ +.+++|||||.-.+--+.+.+.+ .+-.+++++ ..|-..++.+.+.++.
T Consensus 20 ~g~~~L----i~G~pGsGKT~la~qfl~~g~~~-------~ge~~lyvs-~eE~~~~l~~~~~~~G 73 (484)
T TIGR02655 20 IGRSTL----VSGTSGTGKTLFSIQFLYNGIIH-------FDEPGVFVT-FEESPQDIIKNARSFG 73 (484)
T ss_pred CCeEEE----EEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEEE-EecCHHHHHHHHHHcC
Confidence 567788 99999999997544334444432 134566665 4577777777777765
No 403
>PRK04296 thymidine kinase; Provisional
Probab=72.19 E-value=5.8 Score=33.79 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=21.3
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcC
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAP 231 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~P 231 (317)
+++|+|+|||.+. +-++.++.. .+-+++|+-|
T Consensus 7 itG~~GsGKTT~~-l~~~~~~~~-------~g~~v~i~k~ 38 (190)
T PRK04296 7 IYGAMNSGKSTEL-LQRAYNYEE-------RGMKVLVFKP 38 (190)
T ss_pred EECCCCCHHHHHH-HHHHHHHHH-------cCCeEEEEec
Confidence 7899999999544 344545443 2456777766
No 404
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=72.19 E-value=4.4 Score=42.20 Aligned_cols=70 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred cccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHH
Q psy10677 186 FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMY 265 (317)
Q Consensus 186 vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~ 265 (317)
++ ..||||+||| +||..+.+.+ +.....+..+.-...
T Consensus 487 ~l----f~Gp~GvGKT--------------------------------~lA~~la~~l-------~~~~~~~d~se~~~~ 523 (731)
T TIGR02639 487 FL----FTGPTGVGKT--------------------------------ELAKQLAEAL-------GVHLERFDMSEYMEK 523 (731)
T ss_pred EE----EECCCCccHH--------------------------------HHHHHHHHHh-------cCCeEEEeCchhhhc
Q ss_pred HHHHccCcEEECc---------HHHHHHHhcCCCCCCCCchhHHH
Q psy10677 266 QVILLRILTSATN---------TSLGIYLQQNDAHSPCLSVWRRL 301 (317)
Q Consensus 266 ~~~~~~~ilv~TP---------~~l~~~l~~~~~~~~~lde~d~l 301 (317)
.... -++|+| |.|.+.+..+......+||+|++
T Consensus 524 ~~~~---~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 524 HTVS---RLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred ccHH---HHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc
No 405
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.12 E-value=9.1 Score=37.05 Aligned_cols=15 Identities=7% Similarity=-0.197 Sum_probs=12.2
Q ss_pred eeccCCChhHHHHHH
Q psy10677 192 KKAEVQSRSVFTYIL 206 (317)
Q Consensus 192 ~~a~tGsGKTla~~l 206 (317)
+++|+|+|||....-
T Consensus 228 lvGptGvGKTTtaaK 242 (432)
T PRK12724 228 FVGPTGSGKTTSIAK 242 (432)
T ss_pred EECCCCCCHHHHHHH
Confidence 889999999976433
No 406
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=71.92 E-value=2 Score=34.20 Aligned_cols=12 Identities=8% Similarity=-0.299 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++|++|||||..
T Consensus 4 ~~G~pgsGKSt~ 15 (143)
T PF13671_consen 4 LCGPPGSGKSTL 15 (143)
T ss_dssp EEESTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 899999999964
No 407
>KOG0744|consensus
Probab=71.88 E-value=13 Score=34.73 Aligned_cols=63 Identities=5% Similarity=-0.086 Sum_probs=40.5
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEE------------cCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVL------------APTRELAQQIQAVISIFSRTMRIRHACLY 258 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil------------~PtreLa~Qi~~~~~~l~~~~~~~~~~~~ 258 (317)
+.||+|+||| ..+=.+.+++.-.- ....+++.++ .-+--|+.++++.+..+.+.-+.=++++.
T Consensus 182 lhGPPGTGKT-SLCKaLaQkLSIR~---~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 182 LHGPPGTGKT-SLCKALAQKLSIRT---NDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred EeCCCCCChh-HHHHHHHHhheeee---cCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 8999999999 45556667664321 1122333322 23446888899999988887666565554
No 408
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=71.68 E-value=2.2 Score=33.16 Aligned_cols=13 Identities=0% Similarity=-0.238 Sum_probs=10.9
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.||+|+|||...
T Consensus 3 l~G~~G~GKT~l~ 15 (132)
T PF00004_consen 3 LHGPPGTGKTTLA 15 (132)
T ss_dssp EESSTTSSHHHHH
T ss_pred EECcCCCCeeHHH
Confidence 7899999999643
No 409
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=71.55 E-value=2.2 Score=32.99 Aligned_cols=12 Identities=8% Similarity=-0.233 Sum_probs=10.8
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.|++|||||..
T Consensus 3 i~G~~GsGKtTi 14 (129)
T PF13238_consen 3 ISGIPGSGKTTI 14 (129)
T ss_dssp EEESTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 789999999975
No 410
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=71.40 E-value=11 Score=32.52 Aligned_cols=19 Identities=0% Similarity=-0.270 Sum_probs=14.4
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.=+. +.|++|||||.-.
T Consensus 18 ~g~i~~----i~G~~GsGKT~l~ 36 (218)
T cd01394 18 RGTVTQ----VYGPPGTGKTNIA 36 (218)
T ss_pred CCeEEE----EECCCCCCHHHHH
Confidence 345566 9999999999643
No 411
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=71.37 E-value=40 Score=31.38 Aligned_cols=124 Identities=11% Similarity=-0.028 Sum_probs=69.0
Q ss_pred Cchhhhhcccccc--ccCc---CcccccceeccCCChhHHHHHHHHHHHHHcCCCC-------------CCCCCceEEEE
Q psy10677 168 GDKESKNWTIPLN--FQAK---KFISVLQKKAEVQSRSVFTYILPALYHILKMPKL-------------EEGDGPIALVL 229 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g~---dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~-------------~~~~~~~alil 229 (317)
.|.|...|..+.+ ..|+ -.+ +.||.|.||+.. ..-+...+...... ..+.+|-..++
T Consensus 5 yPWl~~~~~~l~~~~~~~rl~hA~L----~~G~~G~Gk~~l-A~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i 79 (319)
T PRK06090 5 YPWLVPVWQNWKAGLDAGRIPGALL----LQSDEGLGVESL-VELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI 79 (319)
T ss_pred cccHHHHHHHHHHHHHcCCcceeEe----eECCCCCCHHHH-HHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE
Confidence 6666666655542 0222 456 899999999843 33334444443211 12456888889
Q ss_pred cCcH----HHHHHHHHHHHHHhc---CCCcEEEEEECCCCHHH--HHHHccC----------cEEEC-cHHHHHHHhcC-
Q psy10677 230 APTR----ELAQQIQAVISIFSR---TMRIRHACLYGGTSKMY--QVILLRI----------LTSAT-NTSLGIYLQQN- 288 (317)
Q Consensus 230 ~Ptr----eLa~Qi~~~~~~l~~---~~~~~~~~~~gg~~~~~--~~~~~~~----------ilv~T-P~~l~~~l~~~- 288 (317)
.|.. --+.||.+..+.+.. .-+.|++.+..-..... ....++. |++++ |.+|+.-+.+.
T Consensus 80 ~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC 159 (319)
T PRK06090 80 KPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC 159 (319)
T ss_pred ecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 8863 245666554333322 12578888765433322 2222222 56655 78888887765
Q ss_pred -CCCCCCCc
Q psy10677 289 -DAHSPCLS 296 (317)
Q Consensus 289 -~~~~~~ld 296 (317)
.+.+..++
T Consensus 160 q~~~~~~~~ 168 (319)
T PRK06090 160 QQWVVTPPS 168 (319)
T ss_pred eeEeCCCCC
Confidence 45555554
No 412
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=71.28 E-value=2.2 Score=33.97 Aligned_cols=12 Identities=0% Similarity=-0.260 Sum_probs=10.8
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.||+|+|||..
T Consensus 4 L~G~~G~GKt~l 15 (139)
T PF07728_consen 4 LVGPPGTGKTTL 15 (139)
T ss_dssp EEESSSSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 899999999964
No 413
>KOG0924|consensus
Probab=71.27 E-value=11 Score=38.59 Aligned_cols=114 Identities=8% Similarity=-0.060 Sum_probs=57.7
Q ss_pred Cchhhhhcccccc--------ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEE--cCcHHHHH
Q psy10677 168 GDKESKNWTIPLN--------FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVL--APTRELAQ 237 (317)
Q Consensus 168 t~iQ~~~ip~~l~--------~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil--~PtreLa~ 237 (317)
-.-|.+-+|.... ....=|+ +.++||||||.-. -++|.... -+-..+|- -|-|.-|.
T Consensus 348 i~eqrq~LPvf~~R~~ll~~ir~n~vvv----ivgETGSGKTTQl----~QyL~edG-----Y~~~GmIGcTQPRRvAAi 414 (1042)
T KOG0924|consen 348 IREQRQYLPVFACRDQLLSVIRENQVVV----IVGETGSGKTTQL----AQYLYEDG-----YADNGMIGCTQPRRVAAI 414 (1042)
T ss_pred HHHHHhhcchHHHHHHHHHHHhhCcEEE----EEecCCCCchhhh----HHHHHhcc-----cccCCeeeecCchHHHHH
Confidence 4456666665431 1344456 8899999999743 23344332 12222443 37888887
Q ss_pred HHHHHHHH-HhcCCCcEEEEEE--CCCCHHHHHHHccCcEEECcHHHHH-HHhcC---CCCCCCCchhH
Q psy10677 238 QIQAVISI-FSRTMRIRHACLY--GGTSKMYQVILLRILTSATNTSLGI-YLQQN---DAHSPCLSVWR 299 (317)
Q Consensus 238 Qi~~~~~~-l~~~~~~~~~~~~--gg~~~~~~~~~~~~ilv~TP~~l~~-~l~~~---~~~~~~lde~d 299 (317)
.+.+.+.. +...+|-.+...+ -+... .-..|=.-|-|-|+. .|..+ ..+...+|||+
T Consensus 415 SVAkrVa~EM~~~lG~~VGYsIRFEdvT~-----~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAH 478 (1042)
T KOG0924|consen 415 SVAKRVAEEMGVTLGDTVGYSIRFEDVTS-----EDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAH 478 (1042)
T ss_pred HHHHHHHHHhCCccccccceEEEeeecCC-----CceeEEEeccchHHHHHhhhhhhhheeEEEechhh
Confidence 77766543 3222232221111 01110 001155667777763 44443 34456678875
No 414
>PTZ00301 uridine kinase; Provisional
Probab=71.14 E-value=5.6 Score=34.65 Aligned_cols=12 Identities=8% Similarity=-0.199 Sum_probs=10.4
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.|++|||||..
T Consensus 8 IaG~SgSGKTTl 19 (210)
T PTZ00301 8 ISGASGSGKSSL 19 (210)
T ss_pred EECCCcCCHHHH
Confidence 789999999964
No 415
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=71.08 E-value=7.3 Score=33.31 Aligned_cols=27 Identities=7% Similarity=-0.096 Sum_probs=16.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
...+++ +.|.||||||.+...-+..-+
T Consensus 37 ~~~h~l----i~G~tgsGKS~~l~~ll~~l~ 63 (205)
T PF01580_consen 37 KNPHLL----IAGATGSGKSTLLRTLLLSLA 63 (205)
T ss_dssp GS-SEE----EE--TTSSHHHHHHHHHHHHH
T ss_pred CCceEE----EEcCCCCCccHHHHHHHHHHH
Confidence 344788 999999999977654433333
No 416
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=71.01 E-value=9.7 Score=39.94 Aligned_cols=39 Identities=13% Similarity=0.040 Sum_probs=28.0
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRE 234 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptre 234 (317)
.+++ +.|+||||||..--. ++..+.. .+++++|+=|.++
T Consensus 431 ~n~~----I~G~tGsGKS~~~~~-l~~~~~~-------~g~~v~iiD~~~s 469 (797)
T TIGR02746 431 YNIA----VVGGSGAGKSFFMQE-LIVDNLS-------RGGKVWVIDVGRS 469 (797)
T ss_pred cceE----EEcCCCCCHHHHHHH-HHHHHHh-------CCCEEEEEeCCCC
Confidence 4688 999999999977554 3344443 2578888888765
No 417
>KOG1015|consensus
Probab=70.78 E-value=8.7 Score=40.71 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=44.3
Q ss_pred CCCchhhhhcccccc-----------ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHH
Q psy10677 166 KCGDKESKNWTIPLN-----------FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRE 234 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~-----------~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptre 234 (317)
+|.|+|...+..+.. ..|-.+| +.-=-|-|||+-- +..++.++...+ -..-+|||+||..-
T Consensus 668 kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcI----LAHcMGLGKTlQV-vtflhTvL~c~k---lg~ktaLvV~PlNt 739 (1567)
T KOG1015|consen 668 KLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCI----LAHCMGLGKTLQV-VTFLHTVLLCDK---LGFKTALVVCPLNT 739 (1567)
T ss_pred hcCcccccchhHHHHHHHHHHHhhcCCCCcchH----HHHhhcccceehh-hHHHHHHHHhhc---cCCceEEEEcchHH
Confidence 446666655544432 2345555 4445588899732 223333332211 23468999999654
Q ss_pred HHHHHHHHHHHHhcCC----CcEEEEE
Q psy10677 235 LAQQIQAVISIFSRTM----RIRHACL 257 (317)
Q Consensus 235 La~Qi~~~~~~l~~~~----~~~~~~~ 257 (317)
+.--.+.+.+|...+ .+.+..+
T Consensus 740 -~~NW~~EFekWm~~~e~~~~leV~eL 765 (1567)
T KOG1015|consen 740 -ALNWMNEFEKWMEGLEDDEKLEVSEL 765 (1567)
T ss_pred -HHHHHHHHHHhcccccccccceeehh
Confidence 334455666666542 3555555
No 418
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=70.61 E-value=6.8 Score=32.30 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=14.1
Q ss_pred cceeccCCChhHH--HHHHHHH
Q psy10677 190 LQKKAEVQSRSVF--TYILPAL 209 (317)
Q Consensus 190 ~~~~a~tGsGKTl--a~~lp~l 209 (317)
++++|++|||||. ..++..+
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3488999999996 3444444
No 419
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=70.50 E-value=6.7 Score=38.69 Aligned_cols=53 Identities=9% Similarity=0.044 Sum_probs=35.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|.-++ +.+|+|+|||.-. +-.+....+ .+-++++++ +.|-..|+.+.++.+.
T Consensus 262 ~gs~~l----i~G~~G~GKt~l~-~~f~~~~~~-------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 262 KDSIIL----ATGATGTGKTLLV-SKFLENACA-------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CCcEEE----EECCCCCCHHHHH-HHHHHHHHH-------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 456677 9999999999733 333333322 245677765 7788888888887764
No 420
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=70.26 E-value=9.6 Score=41.37 Aligned_cols=63 Identities=10% Similarity=-0.062 Sum_probs=44.7
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
.|++-|.+|+..+.. .++=++ ++|+.|+|||...- ++...+.. .|..++.++||---|..+.+
T Consensus 381 ~Ls~eQ~~Av~~i~~-~~r~~~----v~G~AGTGKTt~l~-~~~~~~e~-------~G~~V~g~ApTgkAA~~L~e 443 (1102)
T PRK13826 381 RLSDEQKTAIEHVAG-PARIAA----VVGRAGAGKTTMMK-AAREAWEA-------AGYRVVGGALAGKAAEGLEK 443 (1102)
T ss_pred CCCHHHHHHHHHHhc-cCCeEE----EEeCCCCCHHHHHH-HHHHHHHH-------cCCeEEEEcCcHHHHHHHHH
Confidence 569999999988761 344456 88999999995433 33333332 36789999999877777654
No 421
>KOG1806|consensus
Probab=69.90 E-value=5.2 Score=42.46 Aligned_cols=69 Identities=9% Similarity=0.018 Sum_probs=52.5
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
++||-|-++|..-+ ...++. +.+|+|+|||-..+ -++.-+... ...++++|++.+..--.|..+.+.+
T Consensus 738 ~ft~~qveai~sg~--qpgltm----vvgppgtgktd~av-qil~~lyhn-----~p~qrTlivthsnqaln~lfeKi~~ 805 (1320)
T KOG1806|consen 738 KFTPTQVEAILSGM--QPGLTM----VVGPPGTGKTDVAV-QILSVLYHN-----SPNQRTLIVTHSNQALNQLFEKIMA 805 (1320)
T ss_pred ccCHHHHHHHHhcC--CCCcee----eecCCCCCCcchhh-hhhhhhhhc-----CCCcceEEEEecccchhHHHHHHHh
Confidence 66999999998888 888888 99999999996542 233333332 4578999999988877777776665
Q ss_pred H
Q psy10677 246 F 246 (317)
Q Consensus 246 l 246 (317)
+
T Consensus 806 ~ 806 (1320)
T KOG1806|consen 806 L 806 (1320)
T ss_pred c
Confidence 4
No 422
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=69.83 E-value=6.2 Score=31.92 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=16.5
Q ss_pred cceeccCCChhHHHHHHHHHHHHHc
Q psy10677 190 LQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 190 ~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
++++|+.+||||. ++--++..+.+
T Consensus 3 v~VvG~~~sGKTT-l~~~Li~~l~~ 26 (140)
T PF03205_consen 3 VQVVGPKNSGKTT-LIRKLINELKR 26 (140)
T ss_dssp EEEEESTTSSHHH-HHHHHHHHHHH
T ss_pred EEEECCCCCCHHH-HHHHHHHHHhH
Confidence 3499999999994 44445555553
No 423
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=69.73 E-value=7.2 Score=40.83 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=33.0
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPS 102 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~ 102 (317)
-||.++. +|++|..+++|| -=|+|+ .+++.|+.|.-|.
T Consensus 284 HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi------G~vdlVIq~~SP~ 333 (814)
T COG1201 284 HHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI------GDIDLVIQLGSPK 333 (814)
T ss_pred ecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc------CCceEEEEeCCcH
Confidence 7898886 999999999999 778898 8889998887663
No 424
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=69.67 E-value=27 Score=32.23 Aligned_cols=47 Identities=9% Similarity=0.144 Sum_probs=28.8
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCC----CCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLE----EGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~----~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
++|+|+.|||. ++++..+..+.. ...-|-.+|-+|...-....|..+
T Consensus 66 ivG~snnGKT~-----Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 66 IVGDSNNGKTM-----IIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred EecCCCCcHHH-----HHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 99999999996 456655433211 112367777777765554444443
No 425
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=69.54 E-value=7.2 Score=33.91 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=29.5
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|.-++ +.|++|+|||.-.+--+...+.. +-.++++ -+.+-..|+.+.+..+.
T Consensus 15 ~g~~~l----i~G~~G~GKt~~~~~~~~~~~~~--------g~~~~y~-s~e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIV----VIGEYGTGKTTFSLQFLYQGLKN--------GEKAMYI-SLEEREERILGYAKSKG 67 (224)
T ss_pred CCeEEE----EECCCCCCHHHHHHHHHHHHHhC--------CCeEEEE-ECCCCHHHHHHHHHHcC
Confidence 455667 99999999986322223333321 3345554 34445666666665543
No 426
>KOG2373|consensus
Probab=69.11 E-value=0.97 Score=42.25 Aligned_cols=19 Identities=5% Similarity=-0.099 Sum_probs=14.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.=.+ ..+|||||||.-.
T Consensus 272 ~GElTv----lTGpTGsGKTTFl 290 (514)
T KOG2373|consen 272 PGELTV----LTGPTGSGKTTFL 290 (514)
T ss_pred CCceEE----EecCCCCCceeEe
Confidence 455667 8999999999643
No 427
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=68.87 E-value=9.7 Score=35.48 Aligned_cols=27 Identities=11% Similarity=-0.048 Sum_probs=18.0
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
.|+=+. +.+|+|||||.- ++.++....
T Consensus 54 ~G~ite----I~G~~GsGKTtL-aL~~~~~~~ 80 (321)
T TIGR02012 54 RGRIIE----IYGPESSGKTTL-ALHAIAEAQ 80 (321)
T ss_pred CCeEEE----EECCCCCCHHHH-HHHHHHHHH
Confidence 455556 999999999954 344444443
No 428
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=68.74 E-value=2.7 Score=37.08 Aligned_cols=17 Identities=6% Similarity=-0.197 Sum_probs=15.3
Q ss_pred cCcCcccccceeccCCChhHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVF 202 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTl 202 (317)
.|.-+. +.+|+|||||.
T Consensus 30 ~Ge~va----I~GpSGSGKST 46 (226)
T COG1136 30 AGEFVA----IVGPSGSGKST 46 (226)
T ss_pred CCCEEE----EECCCCCCHHH
Confidence 788888 99999999986
No 429
>KOG3905|consensus
Probab=68.72 E-value=5.6 Score=37.02 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=32.3
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEE
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVL 229 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil 229 (317)
+.+|.++=..+- +|++|+ +.+..||||| .++.+|.......++.+.-.++|
T Consensus 39 sev~T~~~sklp--sgk~Vl----vlGdn~sGKt-----sLi~klqg~e~~KkgsgLeY~yl 89 (473)
T KOG3905|consen 39 SEVSTRTRSKLP--SGKNVL----VLGDNGSGKT-----SLISKLQGSETVKKGSGLEYLYL 89 (473)
T ss_pred HHhhhcccccCC--CCCeEE----EEccCCCchh-----HHHHHhhcccccCCCCCcceEEE
Confidence 344444444555 999999 9999999998 34555554433334445555554
No 430
>PHA00729 NTP-binding motif containing protein
Probab=68.71 E-value=3.2 Score=36.62 Aligned_cols=53 Identities=8% Similarity=-0.108 Sum_probs=28.5
Q ss_pred CcccccceeccCCChhHH-HHHHHHHHHHHcC-CC-----CCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 185 KFISVLQKKAEVQSRSVF-TYILPALYHILKM-PK-----LEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTl-a~~lp~l~~l~~~-~~-----~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
+++ +.|++|+|||. |..+ ...+... .. ..-..+ +-.+.+...+|...+.....
T Consensus 19 nIl----ItG~pGvGKT~LA~aL--a~~l~~~l~~l~~~~~~~d~~-~~~~fid~~~Ll~~L~~a~~ 78 (226)
T PHA00729 19 SAV----IFGKQGSGKTTYALKV--ARDVFWKLNNLSTKDDAWQYV-QNSYFFELPDALEKIQDAID 78 (226)
T ss_pred EEE----EECCCCCCHHHHHHHH--HHHHHhhcccccchhhHHhcC-CcEEEEEHHHHHHHHHHHHh
Confidence 567 99999999994 4433 3332210 00 000112 23444567788887775443
No 431
>KOG1942|consensus
Probab=68.53 E-value=4.1 Score=37.42 Aligned_cols=27 Identities=4% Similarity=-0.009 Sum_probs=22.1
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
.|+-++ +.+|.|+||| |..+.+-+.+-
T Consensus 63 aGravL----laGppgtGKT-AlAlaisqELG 89 (456)
T KOG1942|consen 63 AGRAVL----LAGPPGTGKT-ALALAISQELG 89 (456)
T ss_pred cCcEEE----EecCCCCchh-HHHHHHHHHhC
Confidence 899999 9999999999 55566666664
No 432
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=68.53 E-value=2.2 Score=35.38 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=15.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+++.++ +.|+.|+|||.- +--++.++..
T Consensus 23 ~~~~~l----l~G~~G~GKT~l-l~~~~~~~~~ 50 (185)
T PF13191_consen 23 SPRNLL----LTGESGSGKTSL-LRALLDRLAE 50 (185)
T ss_dssp ----EE----E-B-TTSSHHHH-HHHHHHHHHH
T ss_pred CCcEEE----EECCCCCCHHHH-HHHHHHHHHh
Confidence 566778 999999999953 3335555554
No 433
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=68.42 E-value=6.2 Score=35.04 Aligned_cols=23 Identities=9% Similarity=-0.135 Sum_probs=17.7
Q ss_pred eeccCCChhHHHHHHHHHHHHHcC
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+.||.||||| +|+-.+-+++...
T Consensus 1 ViGpaGSGKT-T~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKT-TFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHH-HHHHHHHHHHTTT
T ss_pred CCCCCCCCHH-HHHHHHHHHHHhc
Confidence 4699999999 7777777777554
No 434
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=68.38 E-value=3 Score=36.15 Aligned_cols=19 Identities=11% Similarity=-0.088 Sum_probs=15.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +.||+|+|||...
T Consensus 37 ~~~~ll----l~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLY----LWGESGSGKSHLL 55 (226)
T ss_pred CCCeEE----EECCCCCCHHHHH
Confidence 566788 9999999999644
No 435
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=68.32 E-value=4.6 Score=40.34 Aligned_cols=78 Identities=17% Similarity=0.074 Sum_probs=52.3
Q ss_pred cccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEcc-CCCchhhhhhhcc----------------------
Q psy10677 2 WSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICH-EYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 2 FSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~-~~~K~~~L~~ll~---------------------- 58 (317)
.|||... -+++|+++=-++ |..... .. .++.+..+|. +.+|.+.+.++.+
T Consensus 378 LSATVgN-p~elA~~l~a~l--V~y~~R---PV-plErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SR 450 (830)
T COG1202 378 LSATVGN-PEELAKKLGAKL--VLYDER---PV-PLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSR 450 (830)
T ss_pred EEeecCC-hHHHHHHhCCee--EeecCC---CC-ChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecch
Confidence 4888754 345776653333 233222 22 2444445565 6678888887775
Q ss_pred -------------------CCCCccc--------eeecCcccceec----ccccCCcCC
Q psy10677 59 -------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFR 86 (317)
Q Consensus 59 -------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr 86 (317)
.|+++++ +|.++...+.|+ |-|.|+|..
T Consensus 451 rr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPAS 509 (830)
T COG1202 451 RRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPAS 509 (830)
T ss_pred hhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchH
Confidence 8999998 999999999998 888898543
No 436
>PRK14530 adenylate kinase; Provisional
Probab=68.19 E-value=2.8 Score=36.37 Aligned_cols=18 Identities=0% Similarity=-0.106 Sum_probs=14.9
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+..++ +.|++|||||..
T Consensus 2 ~~~~I~----i~G~pGsGKsT~ 19 (215)
T PRK14530 2 SQPRIL----LLGAPGAGKGTQ 19 (215)
T ss_pred CCCEEE----EECCCCCCHHHH
Confidence 566778 999999999963
No 437
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=67.75 E-value=3.2 Score=35.09 Aligned_cols=18 Identities=11% Similarity=-0.189 Sum_probs=14.3
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
|..++ +.||+|||||...
T Consensus 2 g~~i~----l~G~sGsGKsTl~ 19 (186)
T PRK10078 2 GKLIW----LMGPSGSGKDSLL 19 (186)
T ss_pred CcEEE----EECCCCCCHHHHH
Confidence 45567 8999999999654
No 438
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=67.14 E-value=4.7 Score=42.28 Aligned_cols=28 Identities=0% Similarity=-0.135 Sum_probs=23.9
Q ss_pred CCCCccc------eeecCcccceec----ccccCCcCC
Q psy10677 59 GHYPKSV------RFVLGTAGFLLS----AVSFSLPFR 86 (317)
Q Consensus 59 lhg~~~q------~F~~g~~~iLva----arg~~~~lr 86 (317)
|||+..+ +|+.+...|+|| +||.||++.
T Consensus 460 Lnakq~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~Lg 497 (830)
T PRK12904 460 LNAKNHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLG 497 (830)
T ss_pred ccCchHHHHHHHHHhcCCCceEEEecccccCCcCccCC
Confidence 8886333 899999999999 999999875
No 439
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=66.96 E-value=3.3 Score=37.11 Aligned_cols=19 Identities=16% Similarity=0.031 Sum_probs=15.0
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
...+++ +.||+|+|||...
T Consensus 41 ~~~~vl----l~GppGtGKTtlA 59 (261)
T TIGR02881 41 QVLHMI----FKGNPGTGKTTVA 59 (261)
T ss_pred CcceEE----EEcCCCCCHHHHH
Confidence 345677 9999999999754
No 440
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=66.85 E-value=2.7 Score=37.82 Aligned_cols=67 Identities=16% Similarity=-0.003 Sum_probs=33.8
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEE
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRH 254 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~ 254 (317)
.|+=+. +.||+|||||. +|-.+..+.+-....-.-.-+.+-=.|++|+|..+.-.-.......++++
T Consensus 27 ~G~i~~----iiGpNG~GKST--LLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV 93 (258)
T COG1120 27 KGEITG----ILGPNGSGKST--LLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV 93 (258)
T ss_pred CCcEEE----EECCCCCCHHH--HHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence 677777 89999999985 34445444431100000011222224677777665443333322234444
No 441
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=66.75 E-value=9.8 Score=37.44 Aligned_cols=68 Identities=13% Similarity=-0.079 Sum_probs=50.5
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
-.-|.++.=..- .|... +.+-.|||||....+-+-+--.++ +.-+.+|-+=||-|++++...+.+|.
T Consensus 164 D~~Q~kaa~~~~--~G~qr-----IrGLAGSGKT~~La~Kaa~lh~kn------Pd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 164 DTDQTKAAFQSG--FGKQR-----IRGLAGSGKTELLAHKAAELHSKN------PDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cchhheeeeecC--Cchhh-----hhcccCCCchhHHHHHHHHHhcCC------CCceEEEEeehHHHHHHHHHHHHHHH
Confidence 555777766666 78775 467789999987766554433332 34588899999999999999999987
Q ss_pred c
Q psy10677 248 R 248 (317)
Q Consensus 248 ~ 248 (317)
-
T Consensus 231 f 231 (660)
T COG3972 231 F 231 (660)
T ss_pred H
Confidence 3
No 442
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=66.65 E-value=3.8 Score=33.72 Aligned_cols=19 Identities=0% Similarity=-0.275 Sum_probs=16.2
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|+-++ +++++|+|||...
T Consensus 13 ~g~gvL----i~G~sG~GKStla 31 (149)
T cd01918 13 GGIGVL----ITGPSGIGKSELA 31 (149)
T ss_pred CCEEEE----EEcCCCCCHHHHH
Confidence 688899 9999999999543
No 443
>CHL00181 cbbX CbbX; Provisional
Probab=66.43 E-value=3.7 Score=37.57 Aligned_cols=20 Identities=0% Similarity=-0.125 Sum_probs=15.9
Q ss_pred cCcCcccccceeccCCChhHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
.|.+++ +.||+|+|||...-
T Consensus 58 ~~~~il----l~G~pGtGKT~lAr 77 (287)
T CHL00181 58 PGLHMS----FTGSPGTGKTTVAL 77 (287)
T ss_pred CCceEE----EECCCCCCHHHHHH
Confidence 455677 99999999997653
No 444
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=66.26 E-value=3.4 Score=38.12 Aligned_cols=12 Identities=0% Similarity=-0.335 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.||||||||..
T Consensus 9 I~GpTasGKS~L 20 (300)
T PRK14729 9 IFGPTAVGKSNI 20 (300)
T ss_pred EECCCccCHHHH
Confidence 899999999953
No 445
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=66.11 E-value=47 Score=30.81 Aligned_cols=104 Identities=19% Similarity=0.101 Sum_probs=56.3
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCC--------CCCCCCCceEEEEcCcH----H--------------------HHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMP--------KLEEGDGPIALVLAPTR----E--------------------LAQQI 239 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~--------~~~~~~~~~alil~Ptr----e--------------------La~Qi 239 (317)
+.||.|+||+.. ...+...+.... +......|-..++.|+. . -+.|+
T Consensus 31 f~G~~G~Gk~~~-A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i 109 (314)
T PRK07399 31 FAGPEGVGRKLA-ALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQI 109 (314)
T ss_pred EECCCCCCHHHH-HHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHH
Confidence 899999999843 233444554432 12245678889999961 1 12355
Q ss_pred HHHHHHHhc---CCCcEEEEEECCCCHHH-HHHHc----c---C---cEEE-CcHHHHHHHhcC--CCCCCCCc
Q psy10677 240 QAVISIFSR---TMRIRHACLYGGTSKMY-QVILL----R---I---LTSA-TNTSLGIYLQQN--DAHSPCLS 296 (317)
Q Consensus 240 ~~~~~~l~~---~~~~~~~~~~gg~~~~~-~~~~~----~---~---ilv~-TP~~l~~~l~~~--~~~~~~ld 296 (317)
.+..+.+.. .-+-+++.+........ ..+.+ . + |+++ .|.+|+.-+.+. .+.+..++
T Consensus 110 r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~ 183 (314)
T PRK07399 110 REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLS 183 (314)
T ss_pred HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCC
Confidence 444333332 12577777765322221 11111 1 1 4555 678888877664 44455555
No 446
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=66.02 E-value=3.3 Score=32.67 Aligned_cols=19 Identities=5% Similarity=-0.199 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.|++|||||.-+
T Consensus 10 ~g~~~~----i~G~nGsGKStLl 28 (137)
T PF00005_consen 10 PGEIVA----IVGPNGSGKSTLL 28 (137)
T ss_dssp TTSEEE----EEESTTSSHHHHH
T ss_pred CCCEEE----EEccCCCccccce
Confidence 677778 9999999999543
No 447
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.96 E-value=2.1 Score=35.78 Aligned_cols=16 Identities=13% Similarity=-0.043 Sum_probs=13.2
Q ss_pred eeccCCChhHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILP 207 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp 207 (317)
+.+|+|||||..|..-
T Consensus 7 vaG~NGsGKstv~~~~ 22 (187)
T COG4185 7 VAGPNGSGKSTVYAST 22 (187)
T ss_pred EecCCCCCceeeeecc
Confidence 6799999999887553
No 448
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=65.89 E-value=11 Score=35.06 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=18.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
.|+=+. +.+|+||||| .+++.++....
T Consensus 54 ~G~ite----I~Gp~GsGKT-tLal~~~~~~~ 80 (325)
T cd00983 54 KGRIIE----IYGPESSGKT-TLALHAIAEAQ 80 (325)
T ss_pred CCeEEE----EECCCCCCHH-HHHHHHHHHHH
Confidence 345555 9999999999 45555554443
No 449
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=65.88 E-value=12 Score=32.10 Aligned_cols=22 Identities=5% Similarity=-0.164 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILP 207 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp 207 (317)
.|.=+. +.||+|||||.-.+--
T Consensus 11 ~g~i~~----i~G~~GsGKT~l~~~~ 32 (209)
T TIGR02237 11 RGTITQ----IYGPPGSGKTNICMIL 32 (209)
T ss_pred CCeEEE----EECCCCCCHHHHHHHH
Confidence 344455 9999999999755433
No 450
>KOG0922|consensus
Probab=65.75 E-value=6.7 Score=39.67 Aligned_cols=103 Identities=11% Similarity=0.031 Sum_probs=55.5
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH-HHhcCCCcEEEEE--E
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS-IFSRTMRIRHACL--Y 258 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~-~l~~~~~~~~~~~--~ 258 (317)
+..-++ +.|+||||||.= +| +.|.+..-. ..| ..-+--|-|--|..+.+.+. .....+|=.++.. +
T Consensus 65 ~nqvlI----viGeTGsGKSTQ--ip--QyL~eaG~~--~~g-~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRF 133 (674)
T KOG0922|consen 65 DNQVLI----VIGETGSGKSTQ--IP--QYLAEAGFA--SSG-KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRF 133 (674)
T ss_pred HCCEEE----EEcCCCCCcccc--Hh--HHHHhcccc--cCC-cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEe
Confidence 455567 899999999963 22 233332211 112 24445577766655554443 2222222222211 1
Q ss_pred CCCCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhHH
Q psy10677 259 GGTSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWRR 300 (317)
Q Consensus 259 gg~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~ 300 (317)
.+... .-.+|..-|-|-|+.-+.. .+.+...||||++
T Consensus 134 ed~ts-----~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHE 174 (674)
T KOG0922|consen 134 EDSTS-----KDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHE 174 (674)
T ss_pred cccCC-----CceeEEEecchHHHHHHhcCCccccccEEEEechhh
Confidence 11111 1123889999999976664 3667788999863
No 451
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=65.48 E-value=3.4 Score=36.26 Aligned_cols=17 Identities=6% Similarity=-0.064 Sum_probs=14.8
Q ss_pred cCcCcccccceeccCCChhHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVF 202 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTl 202 (317)
.|.=+. +++|+|||||.
T Consensus 27 ~Gevv~----iiGpSGSGKST 43 (240)
T COG1126 27 KGEVVV----IIGPSGSGKST 43 (240)
T ss_pred CCCEEE----EECCCCCCHHH
Confidence 677778 99999999985
No 452
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=65.30 E-value=3.4 Score=40.25 Aligned_cols=27 Identities=4% Similarity=0.058 Sum_probs=20.8
Q ss_pred hhhccccccccCcCcccccceeccCCChhHHH
Q psy10677 172 SKNWTIPLNFQAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 172 ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla 203 (317)
+.|+-...+ .|++++ ..+|+|||||+.
T Consensus 188 KrAleiAAA-GgHnLl----~~GpPGtGKTml 214 (490)
T COG0606 188 KRALEIAAA-GGHNLL----LVGPPGTGKTML 214 (490)
T ss_pred HHHHHHHHh-cCCcEE----EecCCCCchHHh
Confidence 445544332 899999 999999999975
No 453
>KOG1000|consensus
Probab=65.27 E-value=23 Score=34.89 Aligned_cols=121 Identities=9% Similarity=0.045 Sum_probs=71.0
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+-|.|.+.+-..++ .|--++ +.-.-|-|||+-.+-- ...... ++| -||+||..- -.--.+.+..|
T Consensus 199 LlPFQreGv~faL~-RgGR~l----lADeMGLGKTiQAlaI-A~yyra-------Ewp-lliVcPAsv-rftWa~al~r~ 263 (689)
T KOG1000|consen 199 LLPFQREGVIFALE-RGGRIL----LADEMGLGKTIQALAI-ARYYRA-------EWP-LLIVCPASV-RFTWAKALNRF 263 (689)
T ss_pred hCchhhhhHHHHHh-cCCeEE----EecccccchHHHHHHH-HHHHhh-------cCc-EEEEecHHH-hHHHHHHHHHh
Confidence 37889999988886 666677 7889999999854332 222221 344 577788532 22233444444
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHccCcEEECcHH---HHHHHhcCCCCCCCCchhHHHhh
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILLRILTSATNTS---LGIYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~---l~~~l~~~~~~~~~lde~d~l~~ 303 (317)
.... ..+.++.++.+.....-....|.|-.=.. +.+.|..+......+||.+-|-+
T Consensus 264 lps~-~pi~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~ 322 (689)
T KOG1000|consen 264 LPSI-HPIFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKD 322 (689)
T ss_pred cccc-cceEEEecccCCccccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhc
Confidence 4432 22556667666543333333344444332 33556677788888898876655
No 454
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=65.22 E-value=3.9 Score=39.52 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=20.3
Q ss_pred cccccccCcCcccccceeccCCChhHHHHHH
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTYIL 206 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~~l 206 (317)
|-+- .+.|++ ..||+|+|||..|.-
T Consensus 204 ~fve--~~~Nli----~lGp~GTGKThla~~ 228 (449)
T TIGR02688 204 PLVE--PNYNLI----ELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHh--cCCcEE----EECCCCCCHHHHHHH
Confidence 4555 889999 999999999966543
No 455
>PRK00131 aroK shikimate kinase; Reviewed
Probab=65.08 E-value=3.8 Score=33.63 Aligned_cols=19 Identities=0% Similarity=-0.143 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ ++|++|||||...
T Consensus 3 ~~~~i~----l~G~~GsGKstla 21 (175)
T PRK00131 3 KGPNIV----LIGFMGAGKSTIG 21 (175)
T ss_pred CCCeEE----EEcCCCCCHHHHH
Confidence 567788 9999999999753
No 456
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=64.68 E-value=16 Score=37.90 Aligned_cols=76 Identities=9% Similarity=0.003 Sum_probs=51.6
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
..-|.+.+-.++....+-++ ++|.-|=|||.+.-|.+ ..+.+.. ....++|-+||.+=++.+.+.+.+-.
T Consensus 216 Q~~~l~~~~~l~~~~~~~~v----lTAdRGRGKSA~lGi~~-~~~~~~~-----~~~~iiVTAP~~~nv~~Lf~fa~~~l 285 (758)
T COG1444 216 QAEALEILERLLDAPKRALV----LTADRGRGKSAALGIAL-AAAARLA-----GSVRIIVTAPTPANVQTLFEFAGKGL 285 (758)
T ss_pred HHHHHHHHHHHHcCCCceEE----EEcCCCCcHhHHHhHHH-HHHHHhc-----CCceEEEeCCCHHHHHHHHHHHHHhH
Confidence 44444455556632233566 89999999999988877 3333321 15689999999999988888777766
Q ss_pred cCCCcE
Q psy10677 248 RTMRIR 253 (317)
Q Consensus 248 ~~~~~~ 253 (317)
..+|.+
T Consensus 286 ~~lg~~ 291 (758)
T COG1444 286 EFLGYK 291 (758)
T ss_pred HHhCCc
Confidence 655543
No 457
>PRK08939 primosomal protein DnaI; Reviewed
Probab=64.22 E-value=14 Score=34.06 Aligned_cols=48 Identities=10% Similarity=0.136 Sum_probs=27.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
.++.++ +.|++|+|||.... .+...+... |..+.++ ...+|+..+...
T Consensus 155 ~~~gl~----L~G~~G~GKThLa~-Aia~~l~~~-------g~~v~~~-~~~~l~~~lk~~ 202 (306)
T PRK08939 155 KVKGLY----LYGDFGVGKSYLLA-AIANELAKK-------GVSSTLL-HFPEFIRELKNS 202 (306)
T ss_pred CCCeEE----EECCCCCCHHHHHH-HHHHHHHHc-------CCCEEEE-EHHHHHHHHHHH
Confidence 456788 99999999996443 444444432 3344433 333565555443
No 458
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=64.14 E-value=3.7 Score=36.57 Aligned_cols=34 Identities=9% Similarity=-0.071 Sum_probs=21.8
Q ss_pred Cchhhhhcccccc--cc-CcCcccccceeccCCChhHHHHH
Q psy10677 168 GDKESKNWTIPLN--FQ-AKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~-g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
++.+.+++-.+.. .. +..++ +.||+|+|||...-
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~----l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFIL----ITGEVGAGKTTLIR 61 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEE----EEcCCCCCHHHHHH
Confidence 6666666654421 02 23577 89999999996543
No 459
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=64.07 E-value=10 Score=36.01 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=34.2
Q ss_pred CCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 165 KKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 165 ~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+-.+.-|.-|+-.++.++=.=|. ..++-|||||+-.+.+.++.....
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~----L~G~AGtGKTlLALaAgleqv~e~ 273 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVS----LGGKAGTGKTLLALAAGLEQVLER 273 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEE----eeccCCccHhHHHHHHHHHHHHHH
Confidence 33477888899888842222233 779999999998888888877654
No 460
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=63.90 E-value=14 Score=42.77 Aligned_cols=63 Identities=11% Similarity=0.051 Sum_probs=44.6
Q ss_pred CCCchhhhhccccccccC--cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQA--KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
.+++-|.+|+-.++ .. +=.+ +.++.|+|||.. +-.+..+.+ ..|-.+++++||..-|.+..+.
T Consensus 429 ~Ls~~Q~~Av~~il--~s~~~v~i----i~G~aGTGKTt~--l~~l~~~~~------~~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLF--TSTKRFII----INGFGGTGSTEI--AQLLLHLAS------EQGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHH--hCCCCeEE----EEECCCCCHHHH--HHHHHHHHH------hcCCeEEEEeCCHHHHHHHHHH
Confidence 56899999999988 54 4455 779999999954 223333332 1367899999998777666654
No 461
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=63.79 E-value=7.1 Score=37.39 Aligned_cols=107 Identities=11% Similarity=0.152 Sum_probs=56.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.|+.++ +.+.+|||||+ |.|-+|.-+... + -+++| .||---.-+++.+-..-...+ +...+ +.
T Consensus 9 ~G~TLL----IKG~PGTGKTt-faLelL~~l~~~-------~-~v~YI-STRVd~d~vy~~y~~~~~~i~-~~~vl--Da 71 (484)
T PF07088_consen 9 PGQTLL----IKGEPGTGKTT-FALELLNSLKDH-------G-NVMYI-STRVDQDTVYEMYPWIEESID-PTNVL--DA 71 (484)
T ss_pred CCcEEE----EecCCCCCcee-eehhhHHHHhcc-------C-CeEEE-EeccCHHHHHHhhhhhccccC-hhhhh--hh
Confidence 688888 99999999994 556666665542 1 23444 556444444544411111111 11111 11
Q ss_pred CHHHHHHHccCcEEEC----cHHHHHHHhc----CCCCCCCCchhHHHhhhcC
Q psy10677 262 SKMYQVILLRILTSAT----NTSLGIYLQQ----NDAHSPCLSVWRRLQDILG 306 (317)
Q Consensus 262 ~~~~~~~~~~~ilv~T----P~~l~~~l~~----~~~~~~~lde~d~l~~~~g 306 (317)
..+...... ...|.. +..+.++++. .+-.+.++|-||.+++-++
T Consensus 72 tQd~~~~~~-~~~vp~~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiieyla 123 (484)
T PF07088_consen 72 TQDPFELPL-DKDVPFERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIEYLA 123 (484)
T ss_pred ccchhhccc-cccCcccccCHHHHHHHHHHhhhcccCcEEEEecHHHHHHHhh
Confidence 111111111 123444 6777777773 4666778999998888443
No 462
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=63.78 E-value=3.9 Score=35.52 Aligned_cols=19 Identities=0% Similarity=-0.046 Sum_probs=13.9
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+.+++ +.+|.|||||...
T Consensus 21 G~h~lL----l~GppGtGKTmlA 39 (206)
T PF01078_consen 21 GGHHLL----LIGPPGTGKTMLA 39 (206)
T ss_dssp CC--EE----EES-CCCTHHHHH
T ss_pred CCCCeE----EECCCCCCHHHHH
Confidence 678999 9999999999753
No 463
>PRK00300 gmk guanylate kinase; Provisional
Probab=63.30 E-value=3.9 Score=34.91 Aligned_cols=17 Identities=0% Similarity=-0.097 Sum_probs=14.5
Q ss_pred cCcCcccccceeccCCChhHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVF 202 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTl 202 (317)
.|+-++ +.||+|||||.
T Consensus 4 ~g~~i~----i~G~sGsGKst 20 (205)
T PRK00300 4 RGLLIV----LSGPSGAGKST 20 (205)
T ss_pred CCCEEE----EECCCCCCHHH
Confidence 566777 99999999995
No 464
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=63.21 E-value=16 Score=35.70 Aligned_cols=47 Identities=11% Similarity=-0.036 Sum_probs=28.7
Q ss_pred CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 185 KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
.++ +.|++|+|||.- +-.+.+.+... ..+.+++++ +..++...+...
T Consensus 143 pl~----i~G~~G~GKTHL-l~Ai~~~l~~~-----~~~~~v~yv-~~~~f~~~~~~~ 189 (450)
T PRK14087 143 PLF----IYGESGMGKTHL-LKAAKNYIESN-----FSDLKVSYM-SGDEFARKAVDI 189 (450)
T ss_pred ceE----EECCCCCcHHHH-HHHHHHHHHHh-----CCCCeEEEE-EHHHHHHHHHHH
Confidence 466 999999999943 34555555542 124456655 446666665543
No 465
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=63.14 E-value=11 Score=32.91 Aligned_cols=53 Identities=6% Similarity=-0.011 Sum_probs=30.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|.-++ +.|++|||||.-..--+...+. .+-.++++. +.+-..++.+.+..+.
T Consensus 24 ~g~~~~----i~G~~GsGKt~l~~~~~~~~~~--------~g~~~~y~~-~e~~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLIL----IEGDHGTGKSVLSQQFVYGALK--------QGKKVYVIT-TENTSKSYLKQMESVK 76 (234)
T ss_pred CCcEEE----EECCCCCChHHHHHHHHHHHHh--------CCCEEEEEE-cCCCHHHHHHHHHHCC
Confidence 455566 8999999999644333333332 244566554 3444556666666653
No 466
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=63.03 E-value=38 Score=31.59 Aligned_cols=124 Identities=10% Similarity=0.034 Sum_probs=66.0
Q ss_pred CchhhhhccccccccCc---CcccccceeccCCChhHHHHHHHHHHHHHcCCCC---------------CCCCCceEEEE
Q psy10677 168 GDKESKNWTIPLNFQAK---KFISVLQKKAEVQSRSVFTYILPALYHILKMPKL---------------EEGDGPIALVL 229 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~---dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~---------------~~~~~~~alil 229 (317)
+|.|...|..+....|+ -++ +.||.|+|||.... -+...+....+. ..+.+|-..++
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~L----f~G~~G~GK~~la~-~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~ 77 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWL----FAGKKGIGKTAFAR-FAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEI 77 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEE----eECCCCCCHHHHHH-HHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEE
Confidence 56777777666632222 456 89999999986432 223344432211 12345888999
Q ss_pred cCcH-----------HHHHHHHHHHHHHhcC---CCcEEEEEE--CCCCHHHHHHHccC---------cEEEC--cHHHH
Q psy10677 230 APTR-----------ELAQQIQAVISIFSRT---MRIRHACLY--GGTSKMYQVILLRI---------LTSAT--NTSLG 282 (317)
Q Consensus 230 ~Ptr-----------eLa~Qi~~~~~~l~~~---~~~~~~~~~--gg~~~~~~~~~~~~---------ilv~T--P~~l~ 282 (317)
.|+. --+.||.+....+... -+.+++.+- .+.+...+...++. +|+.| |..+.
T Consensus 78 ~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll 157 (325)
T PRK08699 78 TPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVL 157 (325)
T ss_pred ecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhCh
Confidence 9853 2466777655554421 246666552 34444333322221 33444 45666
Q ss_pred HHHhcC--CCCCCCCc
Q psy10677 283 IYLQQN--DAHSPCLS 296 (317)
Q Consensus 283 ~~l~~~--~~~~~~ld 296 (317)
..+.+. .+.+..++
T Consensus 158 ~ti~SRc~~~~~~~~~ 173 (325)
T PRK08699 158 PTIKSRCRKMVLPAPS 173 (325)
T ss_pred HHHHHHhhhhcCCCCC
Confidence 665542 45555555
No 467
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=62.97 E-value=3.6 Score=33.05 Aligned_cols=11 Identities=0% Similarity=-0.272 Sum_probs=10.1
Q ss_pred eeccCCChhHH
Q psy10677 192 KKAEVQSRSVF 202 (317)
Q Consensus 192 ~~a~tGsGKTl 202 (317)
+.||||||||.
T Consensus 4 i~GpsGsGKst 14 (137)
T cd00071 4 LSGPSGVGKST 14 (137)
T ss_pred EECCCCCCHHH
Confidence 78999999995
No 468
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=62.73 E-value=10 Score=34.93 Aligned_cols=12 Identities=17% Similarity=-0.100 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+++++|||||.-
T Consensus 100 i~G~~g~GKT~l 111 (310)
T TIGR02236 100 VFGEFGSGKTQI 111 (310)
T ss_pred EECCCCCCHHHH
Confidence 999999999953
No 469
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=62.68 E-value=3.7 Score=40.30 Aligned_cols=33 Identities=3% Similarity=-0.155 Sum_probs=24.1
Q ss_pred Cchhhhhcccccc-----ccCcCcccccceeccCCChhHHHH
Q psy10677 168 GDKESKNWTIPLN-----FQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 168 t~iQ~~~ip~~l~-----~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
++||....+.+-+ ..|.=+. ++||+|||||.-.
T Consensus 12 r~Ie~~l~~vL~~Vsl~i~~GEiv~----L~G~SGsGKSTLL 49 (504)
T TIGR03238 12 RKIQTDLERILVKFNKELPSSSLLF----LCGSSGDGKSEIL 49 (504)
T ss_pred hHHHHHHHHHHhCCceeecCCCEEE----EECCCCCCHHHHH
Confidence 6788766554432 2678888 9999999999644
No 470
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=62.53 E-value=5.2 Score=30.93 Aligned_cols=21 Identities=0% Similarity=-0.190 Sum_probs=16.4
Q ss_pred cCcCcccccceeccCCChhHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYIL 206 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~l 206 (317)
.|+-+. +.+|+|||||....+
T Consensus 14 ~ge~v~----I~GpSGsGKSTLl~~ 34 (107)
T cd00820 14 GKVGVL----ITGDSGIGKTELALE 34 (107)
T ss_pred CCEEEE----EEcCCCCCHHHHHHH
Confidence 556677 899999999985544
No 471
>KOG0354|consensus
Probab=62.51 E-value=18 Score=37.43 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=44.5
Q ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEEC--------CCCHHHHHHHccC-------cEEECc
Q psy10677 221 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG--------GTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 221 ~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~g--------g~~~~~~~~~~~~-------ilv~TP 278 (317)
....+++|.+-||+.|.-+.+.+..+ ...+++....+| |++..+|...+.. +||||.
T Consensus 411 ~~dsR~IIFve~R~sa~~l~~~l~~~-~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATS 482 (746)
T KOG0354|consen 411 NPDSRTIIFVETRESALALKKWLLQL-HELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATS 482 (746)
T ss_pred CCCccEEEEEehHHHHHHHHHHHHhh-hhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEec
Confidence 34689999999999999999999984 334788888877 5666777766654 688885
No 472
>KOG0388|consensus
Probab=62.46 E-value=27 Score=36.01 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=70.4
Q ss_pred ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEEC
Q psy10677 181 FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYG 259 (317)
Q Consensus 181 ~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~g 259 (317)
++|-|-| ..-+-|-|||.-- +.++.||.+... -.||. ||++|..-| .++...+++++ .+++.-.-|
T Consensus 584 dqGiNGI----LADeMGLGKTVQs-isvlAhLaE~~n---IwGPF-LVVtpaStL----~NWaqEisrFlP~~k~lpywG 650 (1185)
T KOG0388|consen 584 DQGINGI----LADEMGLGKTVQS-ISVLAHLAETHN---IWGPF-LVVTPASTL----HNWAQEISRFLPSFKVLPYWG 650 (1185)
T ss_pred Hccccce----ehhhhccchhHHH-HHHHHHHHHhcc---CCCce-EEeehHHHH----hHHHHHHHHhCccceeecCcC
Confidence 5788888 8889999999754 677888876542 34665 666785443 44444555444 578887778
Q ss_pred CCCHHHHHHHc------------cCcEEECcHHH---HHHHhcCCCCCCCCchhHHHhh
Q psy10677 260 GTSKMYQVILL------------RILTSATNTSL---GIYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 260 g~~~~~~~~~~------------~~ilv~TP~~l---~~~l~~~~~~~~~lde~d~l~~ 303 (317)
+.+........ .+++|++-..+ ..++++=+-.+-+||||..+-+
T Consensus 651 s~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKS 709 (1185)
T KOG0388|consen 651 SPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKS 709 (1185)
T ss_pred ChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhh
Confidence 77655443321 11555554433 2577776777888999875543
No 473
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=62.23 E-value=4.3 Score=35.38 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=14.5
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+..++ +.||+|||||..
T Consensus 41 ~~~~~~----l~G~~G~GKT~L 58 (227)
T PRK08903 41 ADRFFY----LWGEAGSGRSHL 58 (227)
T ss_pred CCCeEE----EECCCCCCHHHH
Confidence 455677 999999999953
No 474
>PRK08084 DNA replication initiation factor; Provisional
Probab=62.21 E-value=4.3 Score=35.86 Aligned_cols=19 Identities=0% Similarity=-0.174 Sum_probs=14.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +.||+|+|||.-.
T Consensus 44 ~~~~l~----l~Gp~G~GKThLl 62 (235)
T PRK08084 44 HSGYIY----LWSREGAGRSHLL 62 (235)
T ss_pred CCCeEE----EECCCCCCHHHHH
Confidence 345677 9999999999543
No 475
>PLN03025 replication factor C subunit; Provisional
Probab=62.07 E-value=5.6 Score=36.80 Aligned_cols=13 Identities=0% Similarity=-0.141 Sum_probs=11.2
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.||+|+|||...
T Consensus 39 l~Gp~G~GKTtla 51 (319)
T PLN03025 39 LSGPPGTGKTTSI 51 (319)
T ss_pred EECCCCCCHHHHH
Confidence 9999999999543
No 476
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=61.79 E-value=11 Score=34.93 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=21.5
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRE 234 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptre 234 (317)
+.|||||||+- +|..|....... ...-.+.+++|++.
T Consensus 92 VYGPTG~GKSq-----LlRNLis~~lI~-P~PETVfFItP~~~ 128 (369)
T PF02456_consen 92 VYGPTGSGKSQ-----LLRNLISCQLIQ-PPPETVFFITPQKD 128 (369)
T ss_pred EECCCCCCHHH-----HHHHhhhcCccc-CCCCceEEECCCCC
Confidence 67999999973 233343332211 12236778888763
No 477
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=61.60 E-value=5 Score=38.78 Aligned_cols=19 Identities=11% Similarity=0.031 Sum_probs=15.5
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
...+++ +.+|||||||...
T Consensus 107 ~~~~iL----l~Gp~GtGKT~lA 125 (412)
T PRK05342 107 QKSNIL----LIGPTGSGKTLLA 125 (412)
T ss_pred CCceEE----EEcCCCCCHHHHH
Confidence 456788 9999999999754
No 478
>KOG4150|consensus
Probab=61.60 E-value=9 Score=38.32 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=64.1
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCC
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEG 221 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~ 221 (317)
+.+.--.+++..|.... ...|..++..++ -|.++|-.|+.+.+...
T Consensus 372 ~sE~~~~A~~R~~~~~~---------~s~~~~~~s~~L-------------------~~~~~~~~~~~~~~~~~------ 417 (1034)
T KOG4150|consen 372 LSETTKSALKRIGLNTL---------YSHQAEAISAAL-------------------AKSLCYNVPVFEELCKD------ 417 (1034)
T ss_pred CCchhHHHHHhcCccee---------ecCHHHHHHHHh-------------------hhccccccHHHHHHHhc------
Confidence 55555566666666666 666777776666 36678888888876654
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcCC--CcEEEEEECCCCHHHH
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISIFSRTM--RIRHACLYGGTSKMYQ 266 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~l~~~~--~~~~~~~~gg~~~~~~ 266 (317)
..-.+|++.||..+|+.+.+.+..+++.+ ++....+.|+++....
T Consensus 418 ~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~ 464 (1034)
T KOG4150|consen 418 TNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDR 464 (1034)
T ss_pred ccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCH
Confidence 34689999999999999999888888754 3444556666665433
No 479
>PRK06620 hypothetical protein; Validated
Probab=61.59 E-value=4.2 Score=35.47 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=14.3
Q ss_pred cCcccccceeccCCChhHHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~ 205 (317)
+.++ +.||+|||||.-.-
T Consensus 45 ~~l~----l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLL----IKGPSSSGKTYLTK 62 (214)
T ss_pred ceEE----EECCCCCCHHHHHH
Confidence 3467 99999999997544
No 480
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=61.55 E-value=42 Score=30.74 Aligned_cols=13 Identities=0% Similarity=-0.151 Sum_probs=11.8
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
++|++|||||.+.
T Consensus 11 i~G~~GsGKtt~~ 23 (288)
T PRK05416 11 VTGLSGAGKSVAL 23 (288)
T ss_pred EECCCCCcHHHHH
Confidence 8999999999865
No 481
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=61.49 E-value=5 Score=33.49 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=14.4
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
|+-++ ++|++|||||...
T Consensus 2 ~~~i~----l~G~~gsGKst~a 19 (175)
T cd00227 2 GRIII----LNGGSSAGKSSIA 19 (175)
T ss_pred CCEEE----EECCCCCCHHHHH
Confidence 45566 9999999999754
No 482
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=61.19 E-value=5.8 Score=31.68 Aligned_cols=18 Identities=6% Similarity=0.063 Sum_probs=15.2
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
....|+ ++|+.||||+.+
T Consensus 20 ~~~pvl----i~GE~GtGK~~~ 37 (138)
T PF14532_consen 20 SSSPVL----ITGEPGTGKSLL 37 (138)
T ss_dssp SSS-EE----EECCTTSSHHHH
T ss_pred CCCcEE----EEcCCCCCHHHH
Confidence 778899 999999999975
No 483
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=61.05 E-value=20 Score=34.86 Aligned_cols=47 Identities=6% Similarity=0.014 Sum_probs=27.7
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQA 241 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~ 241 (317)
..++ +.||+|+|||... -.+...+.+. ..+..++++ +..++..+...
T Consensus 149 ~~l~----l~G~~G~GKThL~-~ai~~~~~~~-----~~~~~v~yi-~~~~~~~~~~~ 195 (450)
T PRK00149 149 NPLF----IYGGVGLGKTHLL-HAIGNYILEK-----NPNAKVVYV-TSEKFTNDFVN 195 (450)
T ss_pred CeEE----EECCCCCCHHHHH-HHHHHHHHHh-----CCCCeEEEE-EHHHHHHHHHH
Confidence 3467 9999999999643 3445555442 124456655 44555544433
No 484
>PRK07261 topology modulation protein; Provisional
Probab=61.00 E-value=4.3 Score=33.94 Aligned_cols=13 Identities=8% Similarity=-0.350 Sum_probs=11.3
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
++|++|||||...
T Consensus 5 i~G~~GsGKSTla 17 (171)
T PRK07261 5 IIGYSGSGKSTLA 17 (171)
T ss_pred EEcCCCCCHHHHH
Confidence 8999999999654
No 485
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=60.72 E-value=5.1 Score=32.81 Aligned_cols=12 Identities=8% Similarity=-0.227 Sum_probs=10.3
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++|++|||||..
T Consensus 3 l~G~~GsGKSTl 14 (163)
T TIGR01313 3 LMGVAGSGKSTI 14 (163)
T ss_pred EECCCCCCHHHH
Confidence 789999999853
No 486
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=60.31 E-value=4.8 Score=33.57 Aligned_cols=13 Identities=0% Similarity=-0.294 Sum_probs=11.6
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.+|+|||||...
T Consensus 6 i~G~sGsGKttl~ 18 (179)
T TIGR02322 6 VVGPSGAGKDTLL 18 (179)
T ss_pred EECCCCCCHHHHH
Confidence 8999999999765
No 487
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=60.18 E-value=5.2 Score=37.48 Aligned_cols=26 Identities=0% Similarity=-0.110 Sum_probs=18.2
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
+.+++ +.||+|+|||... --++..+.
T Consensus 40 ~~~i~----I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 40 PSNVF----IYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CCcEE----EECCCCCCHHHHH-HHHHHHHH
Confidence 35778 9999999999653 34444443
No 488
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=60.05 E-value=22 Score=28.40 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=27.6
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEE-----cCcHHHHHHHHHHHHHHhc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVL-----APTRELAQQIQAVISIFSR 248 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil-----~PtreLa~Qi~~~~~~l~~ 248 (317)
..|+||+|||.+--+- .+++.+.. ..++.+... .|....+.+-.++++.+..
T Consensus 58 fHG~tGtGKn~v~~li-A~~ly~~G----~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~ 114 (127)
T PF06309_consen 58 FHGWTGTGKNFVSRLI-AEHLYKSG----MKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIR 114 (127)
T ss_pred eecCCCCcHHHHHHHH-HHHHHhcc----cCCCceeeecccccCCCchHHHHHHHHHHHHHH
Confidence 6799999999765442 23444332 123333333 3444555555555554443
No 489
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=60.05 E-value=12 Score=32.52 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=33.4
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI 239 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi 239 (317)
.|.=.- +++|+|.||+. +++++.+|.+.....-.-..+-+-=+|+++||..+
T Consensus 26 ~g~iTs----~IGPNGAGKST--LLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 26 KGGITS----IIGPNGAGKST--LLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred CCceeE----EECCCCccHHH--HHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 455445 78999999975 67888888764221100123445567999999764
No 490
>PHA02244 ATPase-like protein
Probab=59.93 E-value=5.4 Score=37.92 Aligned_cols=18 Identities=11% Similarity=-0.068 Sum_probs=16.2
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+.+++ +.||||+|||..
T Consensus 118 ~~~PVL----L~GppGtGKTtL 135 (383)
T PHA02244 118 ANIPVF----LKGGAGSGKNHI 135 (383)
T ss_pred cCCCEE----EECCCCCCHHHH
Confidence 888999 999999999953
No 491
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=59.90 E-value=25 Score=38.78 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=40.8
Q ss_pred cccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCC---C-CCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEE---G-DGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~---~-~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
..-+ .|..+ +.|.-|||||.+...=.|..+........ . .-...||++=|+.=+....+.+++..
T Consensus 13 ~~PL--~G~~L-----IEASAGTGKTyTIa~lyLrLlL~~g~~~~~~~~L~~~~ILvvTFT~aAt~Elr~RIr~rL 81 (1181)
T PRK10876 13 RLPL--QGERL-----IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEILVVTFTEAATEELRGRIRSNI 81 (1181)
T ss_pred ccCC--CCCEE-----EEeCCCCcHHHHHHHHHHHHHccCCccccccCCCChhhEEEEechHHHHHHHHHHHHHHH
Confidence 3346 78776 48999999999877666666664321000 0 11388999888766666555555433
No 492
>PRK09694 helicase Cas3; Provisional
Probab=59.82 E-value=31 Score=36.75 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=34.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHH
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ 266 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~ 266 (317)
+-+++|+++|.+-|+++++.+++.... +..+.++.|.....+.
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~~-~~~v~llHsrf~~~dR 602 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNNT-QVDIDLFHARFTLNDR 602 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCCC-CceEEEEeCCCCHHHH
Confidence 568999999999999999999865321 4678899998775544
No 493
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=59.61 E-value=12 Score=32.33 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=14.8
Q ss_pred eeccCCChhHHHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~ 213 (317)
+.+|.||||| +.+.-++..+.
T Consensus 18 v~Gp~GSGKT-aLie~~~~~L~ 38 (202)
T COG0378 18 VGGPPGSGKT-ALIEKTLRALK 38 (202)
T ss_pred ecCCCCcCHH-HHHHHHHHHHH
Confidence 7799999999 44445555554
No 494
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=59.58 E-value=4.9 Score=42.36 Aligned_cols=26 Identities=4% Similarity=-0.156 Sum_probs=23.1
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFR 86 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr 86 (317)
|||++.| .|+.|. |+|| +||.||.+.
T Consensus 474 Lnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lg 511 (896)
T PRK13104 474 LNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLG 511 (896)
T ss_pred ecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecC
Confidence 9999887 999994 9998 999999875
No 495
>PRK08118 topology modulation protein; Reviewed
Probab=59.46 E-value=4.7 Score=33.62 Aligned_cols=11 Identities=9% Similarity=-0.290 Sum_probs=10.3
Q ss_pred eeccCCChhHH
Q psy10677 192 KKAEVQSRSVF 202 (317)
Q Consensus 192 ~~a~tGsGKTl 202 (317)
++|++|||||.
T Consensus 6 I~G~~GsGKST 16 (167)
T PRK08118 6 LIGSGGSGKST 16 (167)
T ss_pred EECCCCCCHHH
Confidence 89999999996
No 496
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=59.45 E-value=4.9 Score=33.46 Aligned_cols=11 Identities=0% Similarity=-0.272 Sum_probs=10.3
Q ss_pred eeccCCChhHH
Q psy10677 192 KKAEVQSRSVF 202 (317)
Q Consensus 192 ~~a~tGsGKTl 202 (317)
+.||+|||||.
T Consensus 6 l~G~~GsGKsT 16 (180)
T TIGR03263 6 ISGPSGVGKST 16 (180)
T ss_pred EECCCCCCHHH
Confidence 89999999996
No 497
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=59.34 E-value=13 Score=35.22 Aligned_cols=12 Identities=8% Similarity=-0.202 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.||+|||||..
T Consensus 83 L~GPPGsGKStl 94 (361)
T smart00763 83 LLGPVGGGKSSL 94 (361)
T ss_pred EECCCCCCHHHH
Confidence 899999999964
No 498
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=58.96 E-value=7.3 Score=42.00 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=37.4
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHH
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRK 119 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~ 119 (317)
.||.|+. +|-+|++.|||| --|+|| .+...++..+ ...+.-++.+.+|-
T Consensus 835 aHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDI------PnANTiIIe~------AD~fGLsQLyQLRG 895 (1139)
T COG1197 835 AHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDI------PNANTIIIER------ADKFGLAQLYQLRG 895 (1139)
T ss_pred eecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCC------CCCceEEEec------cccccHHHHHHhcc
Confidence 9999997 999999999999 778999 6665544221 33455788888873
No 499
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=58.89 E-value=5.6 Score=38.39 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=15.3
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
...+++ +.+|||+|||...
T Consensus 115 ~~~~iL----L~GP~GsGKT~lA 133 (413)
T TIGR00382 115 SKSNIL----LIGPTGSGKTLLA 133 (413)
T ss_pred CCceEE----EECCCCcCHHHHH
Confidence 345788 9999999999754
No 500
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=58.29 E-value=5.8 Score=38.70 Aligned_cols=29 Identities=10% Similarity=-0.060 Sum_probs=22.8
Q ss_pred hhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 170 KESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 170 iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.....+..+. .+++++ +.+++|+|||...
T Consensus 183 ~le~l~~~L~--~~~~ii----l~GppGtGKT~lA 211 (459)
T PRK11331 183 TIETILKRLT--IKKNII----LQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHHh--cCCCEE----EECCCCCCHHHHH
Confidence 3344556667 899999 9999999999654
Done!