Query psy10677
Match_columns 317
No_of_seqs 345 out of 2793
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 15:50:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 9.8E-37 3.4E-41 270.5 15.2 192 108-315 2-201 (242)
2 2db3_A ATP-dependent RNA helic 100.0 4.1E-35 1.4E-39 281.6 14.0 179 121-315 42-228 (434)
3 1wrb_A DJVLGB; RNA helicase, D 100.0 7.8E-32 2.7E-36 240.3 15.8 178 122-315 8-199 (253)
4 3fmo_B ATP-dependent RNA helic 100.0 1.8E-32 6.2E-37 251.1 10.1 172 122-313 76-259 (300)
5 3dkp_A Probable ATP-dependent 100.0 1.8E-32 6.2E-37 243.1 8.5 183 113-314 3-202 (245)
6 3iuy_A Probable ATP-dependent 100.0 2.2E-31 7.6E-36 233.6 9.6 172 126-314 10-191 (228)
7 2oxc_A Probable ATP-dependent 100.0 1E-30 3.5E-35 230.0 12.2 167 126-313 15-190 (230)
8 2i4i_A ATP-dependent RNA helic 100.0 2.4E-30 8.2E-35 245.5 15.0 177 122-314 2-199 (417)
9 2pl3_A Probable ATP-dependent 100.0 2.1E-30 7.1E-35 228.6 13.6 181 111-313 6-194 (236)
10 3bor_A Human initiation factor 100.0 7.3E-31 2.5E-35 232.1 10.1 168 125-313 20-196 (237)
11 3ber_A Probable ATP-dependent 100.0 4.3E-30 1.5E-34 229.0 11.9 162 132-314 40-210 (249)
12 1q0u_A Bstdead; DEAD protein, 100.0 2.7E-30 9.3E-35 225.4 9.2 160 133-313 2-173 (219)
13 3ly5_A ATP-dependent RNA helic 100.0 6.9E-30 2.4E-34 229.4 11.2 163 135-314 52-225 (262)
14 1qde_A EIF4A, translation init 100.0 1.2E-29 4.2E-34 221.6 11.5 165 128-313 7-178 (224)
15 1vec_A ATP-dependent RNA helic 100.0 2.1E-29 7.2E-34 217.2 12.8 158 135-313 3-169 (206)
16 1t6n_A Probable ATP-dependent 100.0 4.8E-29 1.7E-33 217.3 10.4 166 127-312 6-181 (220)
17 2gxq_A Heat resistant RNA depe 100.0 3E-28 1E-32 209.9 11.2 158 136-313 2-167 (207)
18 2j0s_A ATP-dependent RNA helic 99.9 1E-27 3.5E-32 227.2 11.7 167 127-314 29-203 (410)
19 3fmp_B ATP-dependent RNA helic 99.9 7.4E-27 2.5E-31 226.4 8.2 170 123-312 77-258 (479)
20 3eiq_A Eukaryotic initiation f 99.9 4.4E-26 1.5E-30 215.7 12.6 168 126-314 31-207 (414)
21 1fuu_A Yeast initiation factor 99.9 5.9E-26 2E-30 213.3 11.2 163 130-313 16-185 (394)
22 3sqw_A ATP-dependent RNA helic 99.9 6.3E-26 2.1E-30 225.1 11.9 157 142-313 28-198 (579)
23 3fht_A ATP-dependent RNA helic 99.9 5.7E-26 1.9E-30 214.6 8.9 161 131-311 21-190 (412)
24 3i5x_A ATP-dependent RNA helic 99.9 6.9E-26 2.3E-30 223.7 9.5 165 134-313 70-249 (563)
25 1s2m_A Putative ATP-dependent 99.9 1.2E-25 4E-30 212.2 10.3 157 133-310 19-183 (400)
26 1xti_A Probable ATP-dependent 99.9 2E-25 7E-30 209.6 9.4 157 135-311 8-174 (391)
27 1hv8_A Putative ATP-dependent 99.9 8E-25 2.7E-29 203.2 11.2 158 134-313 5-170 (367)
28 3pey_A ATP-dependent RNA helic 99.9 5.1E-25 1.8E-29 206.5 9.3 157 133-310 3-166 (395)
29 1tf5_A Preprotein translocase 99.9 3.4E-25 1.2E-29 223.1 7.1 169 105-308 35-222 (844)
30 2z0m_A 337AA long hypothetical 99.9 1.8E-23 6.2E-28 192.0 12.4 145 142-313 1-152 (337)
31 3oiy_A Reverse gyrase helicase 99.9 2.8E-23 9.6E-28 197.4 9.1 140 146-310 10-170 (414)
32 2fsf_A Preprotein translocase 99.9 2.9E-23 9.8E-28 208.8 8.9 125 168-308 76-213 (853)
33 1nkt_A Preprotein translocase 99.9 2.2E-22 7.6E-27 202.8 9.1 164 106-303 61-245 (922)
34 3fho_A ATP-dependent RNA helic 99.9 2.6E-22 9E-27 196.2 8.2 181 111-312 94-282 (508)
35 2ipc_A Preprotein translocase 99.9 1.1E-21 3.7E-26 197.4 10.1 130 153-308 76-221 (997)
36 4ddu_A Reverse gyrase; topoiso 99.9 1.5E-21 5E-26 205.7 11.5 128 168-310 80-227 (1104)
37 1oyw_A RECQ helicase, ATP-depe 99.8 1E-21 3.5E-26 192.6 7.8 148 134-312 1-163 (523)
38 2va8_A SSO2462, SKI2-type heli 99.8 1.6E-21 5.5E-26 197.9 8.8 154 133-310 6-165 (715)
39 2v1x_A ATP-dependent DNA helic 99.8 4E-21 1.4E-25 190.8 9.8 146 137-313 23-190 (591)
40 2zj8_A DNA helicase, putative 99.8 1.2E-21 4.2E-26 199.0 5.9 151 136-310 2-158 (720)
41 2ykg_A Probable ATP-dependent 99.8 4.2E-21 1.4E-25 193.9 9.2 137 147-301 3-148 (696)
42 4a2p_A RIG-I, retinoic acid in 99.8 3.9E-21 1.3E-25 188.4 8.7 130 167-306 8-146 (556)
43 3tbk_A RIG-I helicase domain; 99.8 4.9E-21 1.7E-25 187.3 9.1 128 167-303 5-141 (555)
44 2p6r_A Afuhel308 helicase; pro 99.8 8.3E-22 2.8E-26 199.7 2.9 149 136-309 2-157 (702)
45 4a2q_A RIG-I, retinoic acid in 99.8 1.8E-20 6E-25 192.5 9.4 133 153-303 244-385 (797)
46 1gku_B Reverse gyrase, TOP-RG; 99.8 1.4E-20 4.8E-25 197.9 8.4 121 169-303 59-189 (1054)
47 3l9o_A ATP-dependent RNA helic 99.8 1.1E-20 3.7E-25 199.2 6.8 146 135-312 162-312 (1108)
48 3b6e_A Interferon-induced heli 99.8 1E-20 3.4E-25 163.3 4.0 134 168-311 35-183 (216)
49 4f92_B U5 small nuclear ribonu 99.8 1.2E-19 4E-24 197.8 12.0 142 142-303 911-1060(1724)
50 4a2w_A RIG-I, retinoic acid in 99.8 8.3E-20 2.8E-24 190.2 7.1 133 153-303 244-385 (936)
51 1gm5_A RECG; helicase, replica 99.8 7.3E-20 2.5E-24 186.3 5.6 128 150-301 362-502 (780)
52 4f92_B U5 small nuclear ribonu 99.8 8E-19 2.7E-23 191.3 10.6 144 142-301 66-219 (1724)
53 1rif_A DAR protein, DNA helica 99.7 1.1E-18 3.7E-23 157.7 1.2 123 168-303 115-239 (282)
54 4gl2_A Interferon-induced heli 99.7 1.3E-18 4.4E-23 175.8 0.6 128 167-303 8-150 (699)
55 2xgj_A ATP-dependent RNA helic 99.7 1.5E-17 5.3E-22 173.8 8.1 118 168-308 88-210 (1010)
56 3llm_A ATP-dependent RNA helic 99.7 5.6E-18 1.9E-22 149.1 3.2 130 168-309 63-196 (235)
57 4a4z_A Antiviral helicase SKI2 99.7 6.4E-18 2.2E-22 176.6 3.6 122 168-310 41-167 (997)
58 1wp9_A ATP-dependent RNA helic 99.7 1.5E-16 5.1E-21 151.9 10.1 123 167-303 10-139 (494)
59 2whx_A Serine protease/ntpase/ 99.6 2.2E-17 7.6E-22 164.6 2.4 142 136-311 150-297 (618)
60 2oca_A DAR protein, ATP-depend 99.6 2.7E-17 9.3E-22 160.2 1.6 123 168-303 115-239 (510)
61 2eyq_A TRCF, transcription-rep 99.6 2.1E-16 7.2E-21 167.4 7.7 139 141-301 587-737 (1151)
62 2jlq_A Serine protease subunit 99.6 8.2E-17 2.8E-21 155.0 3.7 117 154-301 1-122 (451)
63 2fwr_A DNA repair protein RAD2 99.6 1E-15 3.4E-20 147.7 6.1 113 168-308 95-210 (472)
64 3crv_A XPD/RAD3 related DNA he 99.6 2.3E-15 7.8E-20 148.4 6.9 119 168-303 5-187 (551)
65 2wv9_A Flavivirin protease NS2 99.6 4.9E-17 1.7E-21 163.4 -6.1 118 147-301 200-344 (673)
66 3o8b_A HCV NS3 protease/helica 99.5 6.5E-16 2.2E-20 153.9 1.0 117 169-311 220-338 (666)
67 2fz4_A DNA repair protein RAD2 99.5 6.2E-15 2.1E-19 130.0 4.3 109 168-303 95-206 (237)
68 1yks_A Genome polyprotein [con 99.5 1.2E-15 4.1E-20 146.4 -1.9 95 177-301 4-111 (440)
69 2xau_A PRE-mRNA-splicing facto 99.5 2.3E-15 7.8E-20 153.7 -0.2 149 132-303 69-223 (773)
70 2db3_A ATP-dependent RNA helic 99.4 6.3E-14 2.2E-18 134.0 4.7 143 1-158 241-428 (434)
71 2z83_A Helicase/nucleoside tri 99.4 9.4E-14 3.2E-18 133.9 4.5 114 176-311 16-138 (459)
72 3rc3_A ATP-dependent RNA helic 99.4 9.2E-14 3.2E-18 139.4 1.1 117 171-313 145-262 (677)
73 2w00_A HSDR, R.ECOR124I; ATP-b 99.3 3.2E-13 1.1E-17 141.1 3.4 121 167-303 272-415 (1038)
74 2v6i_A RNA helicase; membrane, 99.3 6E-13 2E-17 127.3 4.6 100 182-301 1-105 (431)
75 2vl7_A XPD; helicase, unknown 99.3 9.4E-13 3.2E-17 129.4 5.5 71 168-259 9-83 (540)
76 3h1t_A Type I site-specific re 99.3 3.4E-13 1.2E-17 133.7 1.3 122 166-303 178-316 (590)
77 4a15_A XPD helicase, ATP-depen 99.2 1.7E-11 5.8E-16 122.3 5.2 82 168-262 5-90 (620)
78 2i4i_A ATP-dependent RNA helic 99.1 2E-11 6.7E-16 115.1 3.8 143 1-158 215-403 (417)
79 3jux_A Protein translocase sub 99.1 1.1E-10 3.8E-15 116.1 8.3 120 168-303 77-259 (822)
80 2p6n_A ATP-dependent RNA helic 99.1 8.8E-12 3E-16 106.1 -0.0 102 15-129 9-154 (191)
81 1z63_A Helicase of the SNF2/RA 99.0 1.8E-10 6.2E-15 111.6 3.9 122 167-303 38-163 (500)
82 3fmp_B ATP-dependent RNA helic 98.9 2.7E-10 9.3E-15 109.8 2.9 123 1-130 272-440 (479)
83 3dmq_A RNA polymerase-associat 98.9 9.7E-10 3.3E-14 114.8 4.0 122 168-303 155-287 (968)
84 2j0s_A ATP-dependent RNA helic 98.8 7.4E-10 2.5E-14 104.2 2.8 115 1-128 215-375 (410)
85 1xti_A Probable ATP-dependent 98.7 8.9E-09 3.1E-13 95.8 5.5 115 1-127 189-348 (391)
86 1z3i_X Similar to RAD54-like; 98.7 2.3E-08 8E-13 100.1 8.8 129 168-303 57-206 (644)
87 3fht_A ATP-dependent RNA helic 98.7 7.9E-09 2.7E-13 96.8 4.7 120 1-127 205-370 (412)
88 3eiq_A Eukaryotic initiation f 98.7 5.9E-09 2E-13 97.8 3.4 115 1-128 219-379 (414)
89 1w36_D RECD, exodeoxyribonucle 98.6 4.3E-09 1.5E-13 104.7 0.9 120 168-303 151-275 (608)
90 1fuu_A Yeast initiation factor 98.6 1.1E-08 3.9E-13 95.1 3.5 116 1-129 198-359 (394)
91 2jgn_A DBX, DDX3, ATP-dependen 98.6 4E-09 1.4E-13 89.0 -0.2 111 32-156 15-171 (185)
92 1s2m_A Putative ATP-dependent 98.6 2.3E-08 7.9E-13 93.5 4.8 114 1-128 199-357 (400)
93 3mwy_W Chromo domain-containin 98.6 8.6E-08 3E-12 98.3 9.2 125 166-302 236-380 (800)
94 1t5i_A C_terminal domain of A 98.6 2.2E-08 7.5E-13 83.4 3.5 84 33-128 2-130 (172)
95 3pey_A ATP-dependent RNA helic 98.5 4.6E-08 1.6E-12 90.8 4.3 120 1-127 182-347 (395)
96 2hjv_A ATP-dependent RNA helic 98.5 3.2E-08 1.1E-12 81.5 2.4 84 32-127 5-133 (163)
97 3sqw_A ATP-dependent RNA helic 98.5 6.9E-08 2.4E-12 95.3 4.3 117 1-129 218-391 (579)
98 1hv8_A Putative ATP-dependent 98.4 1.3E-07 4.5E-12 86.8 4.6 110 1-127 183-336 (367)
99 3i5x_A ATP-dependent RNA helic 98.4 1.3E-07 4.3E-12 92.8 4.5 117 1-129 269-442 (563)
100 2rb4_A ATP-dependent RNA helic 98.4 6.5E-08 2.2E-12 80.5 1.9 89 33-127 4-138 (175)
101 2yjt_D ATP-dependent RNA helic 97.6 7.7E-08 2.6E-12 79.7 0.0 59 59-129 60-130 (170)
102 3fho_A ATP-dependent RNA helic 98.2 3E-07 1E-11 89.4 2.6 120 1-127 296-461 (508)
103 1fuk_A Eukaryotic initiation f 98.2 9.2E-08 3.1E-12 78.8 -1.1 81 35-127 2-128 (165)
104 3i32_A Heat resistant RNA depe 98.2 3.9E-07 1.3E-11 82.7 2.9 82 36-129 2-128 (300)
105 2z0m_A 337AA long hypothetical 98.1 1.8E-06 6.1E-11 78.2 5.3 111 1-127 165-314 (337)
106 3eaq_A Heat resistant RNA depe 98.1 9.9E-07 3.4E-11 75.8 3.0 82 36-129 5-131 (212)
107 1tf5_A Preprotein translocase 98.1 1.5E-07 5.2E-12 95.3 -3.6 90 59-158 462-569 (844)
108 2v1x_A ATP-dependent DNA helic 98.0 4.1E-06 1.4E-10 82.9 5.0 113 1-127 205-365 (591)
109 2fsf_A Preprotein translocase 97.9 7.9E-07 2.7E-11 90.0 -1.2 107 42-158 419-607 (853)
110 1gku_B Reverse gyrase, TOP-RG; 97.7 2.2E-06 7.5E-11 90.3 -2.6 90 1-101 220-352 (1054)
111 1oyw_A RECQ helicase, ATP-depe 97.6 4.1E-05 1.4E-09 74.6 5.3 109 1-127 179-334 (523)
112 3jux_A Protein translocase sub 97.6 1.3E-05 4.5E-10 80.0 1.0 143 2-158 415-611 (822)
113 3oiy_A Reverse gyrase helicase 97.5 2.6E-05 8.9E-10 73.2 1.8 104 1-124 198-349 (414)
114 4ddu_A Reverse gyrase; topoiso 97.3 4E-05 1.4E-09 81.0 0.9 88 1-102 255-388 (1104)
115 2jlq_A Serine protease subunit 97.3 2.9E-05 1E-09 74.2 -0.2 109 1-125 146-299 (451)
116 2d7d_A Uvrabc system protein B 97.1 0.00011 3.7E-09 73.7 1.3 79 38-123 446-544 (661)
117 2z83_A Helicase/nucleoside tri 97.1 5.9E-05 2E-09 72.2 -1.2 109 1-124 148-300 (459)
118 3o8b_A HCV NS3 protease/helica 97.0 9E-05 3.1E-09 73.9 -0.6 84 38-128 397-507 (666)
119 4b3f_X DNA-binding protein smu 96.9 0.0013 4.6E-08 65.5 7.0 68 165-246 188-256 (646)
120 2whx_A Serine protease/ntpase/ 96.9 6.4E-05 2.2E-09 74.7 -2.8 115 1-124 313-465 (618)
121 2eyq_A TRCF, transcription-rep 96.8 0.0004 1.4E-08 73.8 2.8 93 1-100 756-891 (1151)
122 1c4o_A DNA nucleotide excision 96.8 0.0022 7.5E-08 64.2 7.6 67 168-249 10-79 (664)
123 1yks_A Genome polyprotein [con 96.6 8.9E-05 3E-09 70.6 -3.8 108 1-123 135-285 (440)
124 2gk6_A Regulator of nonsense t 96.6 0.0025 8.6E-08 63.3 6.0 68 166-246 180-247 (624)
125 3upu_A ATP-dependent DNA helic 96.5 0.0024 8.2E-08 61.0 5.6 78 155-243 14-94 (459)
126 2wv9_A Flavivirin protease NS2 96.5 0.00027 9.3E-09 70.9 -1.2 107 1-123 368-519 (673)
127 3l9o_A ATP-dependent RNA helic 96.5 0.0021 7.2E-08 68.0 5.4 60 59-124 510-583 (1108)
128 3lfu_A DNA helicase II; SF1 he 96.5 0.0052 1.8E-07 60.9 7.7 71 166-248 9-79 (647)
129 2xau_A PRE-mRNA-splicing facto 96.4 0.0013 4.5E-08 66.9 2.9 59 59-123 344-431 (773)
130 1nkt_A Preprotein translocase 96.3 0.0015 5.3E-08 66.5 2.9 141 3-157 402-640 (922)
131 2wjy_A Regulator of nonsense t 96.2 0.0049 1.7E-07 63.0 6.1 68 166-246 356-423 (800)
132 3e1s_A Exodeoxyribonuclease V, 96.2 0.006 2E-07 60.0 6.1 62 167-242 190-251 (574)
133 2xzl_A ATP-dependent helicase 96.1 0.0059 2E-07 62.4 5.9 68 166-246 360-427 (802)
134 4a2p_A RIG-I, retinoic acid in 95.7 0.0022 7.5E-08 62.0 0.5 70 38-119 391-493 (556)
135 2v6i_A RNA helicase; membrane, 95.5 0.00078 2.7E-08 63.8 -3.2 81 1-84 129-234 (431)
136 2xgj_A ATP-dependent RNA helic 95.3 0.02 6.7E-07 60.0 6.3 58 59-124 412-485 (1010)
137 1uaa_A REP helicase, protein ( 95.3 0.02 6.7E-07 57.2 5.9 70 167-248 3-72 (673)
138 1pjr_A PCRA; DNA repair, DNA r 95.2 0.036 1.2E-06 55.9 7.6 70 167-248 12-81 (724)
139 3dmq_A RNA polymerase-associat 95.1 0.0077 2.6E-07 62.8 2.5 57 59-127 534-604 (968)
140 1c4o_A DNA nucleotide excision 95.0 0.0074 2.5E-07 60.4 1.7 79 38-123 440-538 (664)
141 3u4q_A ATP-dependent helicase/ 94.9 0.038 1.3E-06 59.1 7.0 104 166-283 10-114 (1232)
142 4gl2_A Interferon-induced heli 94.6 0.0098 3.3E-07 59.4 1.5 70 38-119 401-504 (699)
143 4a2q_A RIG-I, retinoic acid in 94.4 0.0073 2.5E-07 61.6 0.0 70 38-119 632-734 (797)
144 3tbk_A RIG-I helicase domain; 94.3 0.0091 3.1E-07 57.4 0.6 61 38-104 390-483 (555)
145 2fwr_A DNA repair protein RAD2 93.7 0.022 7.5E-07 54.0 1.9 54 59-124 374-439 (472)
146 4a2w_A RIG-I, retinoic acid in 93.6 0.013 4.3E-07 61.0 0.1 70 38-119 632-734 (936)
147 2ykg_A Probable ATP-dependent 93.3 0.01 3.4E-07 59.3 -1.2 70 38-119 399-501 (696)
148 1z5z_A Helicase of the SNF2/RA 93.1 0.03 1E-06 49.5 1.6 55 59-125 143-211 (271)
149 2rb4_A ATP-dependent RNA helic 93.0 0.31 1.1E-05 39.5 7.6 52 223-278 34-92 (175)
150 1gm5_A RECG; helicase, replica 92.7 0.04 1.4E-06 56.0 2.2 58 59-127 619-688 (780)
151 3cpe_A Terminase, DNA packagin 92.7 0.21 7.2E-06 49.0 7.2 71 168-250 165-235 (592)
152 1wp9_A ATP-dependent RNA helic 92.5 0.022 7.5E-07 53.2 -0.2 74 38-123 362-463 (494)
153 2p6n_A ATP-dependent RNA helic 92.4 0.45 1.5E-05 39.3 7.9 51 223-277 54-111 (191)
154 2oca_A DAR protein, ATP-depend 92.0 0.052 1.8E-06 52.0 1.8 57 59-127 377-446 (510)
155 1t5i_A C_terminal domain of A 91.9 0.4 1.4E-05 38.8 7.0 52 223-278 31-89 (172)
156 2hjv_A ATP-dependent RNA helic 91.9 0.31 1.1E-05 39.0 6.2 52 223-278 35-93 (163)
157 2d7d_A Uvrabc system protein B 91.8 0.2 6.7E-06 50.0 5.8 67 168-249 14-83 (661)
158 1fuk_A Eukaryotic initiation f 91.6 0.39 1.3E-05 38.4 6.5 52 223-278 30-88 (165)
159 2o0j_A Terminase, DNA packagin 91.6 0.32 1.1E-05 45.1 6.7 70 167-248 164-233 (385)
160 3eaq_A Heat resistant RNA depe 91.1 0.44 1.5E-05 40.0 6.6 52 223-278 31-89 (212)
161 3rc3_A ATP-dependent RNA helic 91.0 0.058 2E-06 54.0 1.0 78 41-125 324-431 (677)
162 3h1t_A Type I site-specific re 89.3 0.12 3.9E-06 50.6 1.6 75 38-124 440-544 (590)
163 2eyu_A Twitching motility prot 89.1 0.16 5.6E-06 44.4 2.2 19 182-204 24-42 (261)
164 1e9r_A Conjugal transfer prote 87.7 0.55 1.9E-05 43.9 5.1 44 182-237 52-95 (437)
165 2jgn_A DBX, DDX3, ATP-dependen 87.1 0.49 1.7E-05 38.8 3.9 53 222-278 45-104 (185)
166 3vkw_A Replicase large subunit 87.0 0.45 1.5E-05 45.0 3.9 41 192-245 166-206 (446)
167 1z3i_X Similar to RAD54-like; 85.2 0.27 9.1E-06 48.8 1.4 74 39-124 418-514 (644)
168 3i32_A Heat resistant RNA depe 84.9 1.1 3.9E-05 39.8 5.4 52 223-278 28-86 (300)
169 1z63_A Helicase of the SNF2/RA 83.8 0.24 8.4E-06 47.0 0.4 54 59-124 372-439 (500)
170 3co5_A Putative two-component 82.8 0.46 1.6E-05 37.1 1.6 18 182-203 26-43 (143)
171 3n70_A Transport activator; si 82.6 0.55 1.9E-05 36.7 2.0 19 182-204 23-41 (145)
172 2yjt_D ATP-dependent RNA helic 83.1 0.26 8.9E-06 39.8 0.0 51 223-277 30-87 (170)
173 3kl4_A SRP54, signal recogniti 81.7 2 7E-05 40.3 5.9 80 192-282 102-192 (433)
174 3dm5_A SRP54, signal recogniti 80.9 2 6.7E-05 40.6 5.4 79 192-281 105-194 (443)
175 2dr3_A UPF0273 protein PH0284; 80.7 1.3 4.3E-05 37.3 3.8 51 182-245 22-72 (247)
176 3ec2_A DNA replication protein 79.3 0.65 2.2E-05 37.5 1.4 50 182-243 37-86 (180)
177 2p65_A Hypothetical protein PF 79.1 10 0.00035 29.7 8.7 19 182-204 42-60 (187)
178 4b4t_M 26S protease regulatory 78.7 0.41 1.4E-05 45.2 -0.0 54 132-203 175-231 (434)
179 2va8_A SSO2462, SKI2-type heli 78.4 0.61 2.1E-05 46.6 1.1 59 59-123 318-393 (715)
180 1p9r_A General secretion pathw 77.7 0.7 2.4E-05 43.3 1.3 19 182-204 166-184 (418)
181 1g5t_A COB(I)alamin adenosyltr 77.5 1.7 5.7E-05 36.3 3.4 96 192-309 33-139 (196)
182 3eie_A Vacuolar protein sortin 76.7 0.62 2.1E-05 41.7 0.6 52 134-204 14-68 (322)
183 3iij_A Coilin-interacting nucl 75.6 1.2 4.1E-05 35.8 2.0 19 182-204 10-28 (180)
184 2zj8_A DNA helicase, putative 75.1 0.76 2.6E-05 46.0 0.8 56 59-123 300-372 (720)
185 3te6_A Regulatory protein SIR3 75.0 0.86 2.9E-05 41.1 1.1 34 176-214 38-71 (318)
186 1jbk_A CLPB protein; beta barr 75.0 1.1 3.7E-05 35.7 1.6 27 182-213 42-68 (195)
187 2x8a_A Nuclear valosin-contain 74.7 0.62 2.1E-05 40.9 0.0 54 133-204 5-61 (274)
188 2zts_A Putative uncharacterize 74.6 1.1 3.8E-05 37.8 1.6 51 182-245 29-80 (251)
189 2oap_1 GSPE-2, type II secreti 74.6 1.1 3.9E-05 43.0 1.8 19 182-204 259-277 (511)
190 1xwi_A SKD1 protein; VPS4B, AA 73.4 0.69 2.4E-05 41.6 -0.0 52 134-204 8-62 (322)
191 1kgd_A CASK, peripheral plasma 72.9 1.4 4.7E-05 35.7 1.7 19 182-204 4-22 (180)
192 2z43_A DNA repair and recombin 72.9 4.9 0.00017 35.8 5.6 100 182-303 106-217 (324)
193 2p6r_A Afuhel308 helicase; pro 72.8 0.85 2.9E-05 45.5 0.5 55 59-123 302-373 (702)
194 3mwy_W Chromo domain-containin 72.6 1.5 5.3E-05 44.4 2.3 72 41-124 576-670 (800)
195 3h4m_A Proteasome-activating n 72.5 0.75 2.6E-05 40.0 -0.0 19 182-204 50-68 (285)
196 3bos_A Putative DNA replicatio 71.8 1.5 5E-05 36.5 1.7 19 182-204 51-69 (242)
197 2qmh_A HPR kinase/phosphorylas 71.5 1.5 5.3E-05 36.8 1.7 20 182-205 33-53 (205)
198 3bh0_A DNAB-like replicative h 71.1 6.4 0.00022 35.0 5.9 52 182-246 67-118 (315)
199 1ixz_A ATP-dependent metallopr 70.9 0.74 2.5E-05 39.4 -0.4 15 186-204 52-66 (254)
200 3syl_A Protein CBBX; photosynt 70.8 1.6 5.6E-05 38.2 1.9 19 182-204 66-84 (309)
201 2gza_A Type IV secretion syste 70.6 1.6 5.5E-05 39.9 1.8 19 182-204 174-192 (361)
202 2orw_A Thymidine kinase; TMTK, 70.6 4.3 0.00015 33.0 4.3 33 192-232 8-40 (184)
203 1lvg_A Guanylate kinase, GMP k 70.4 1.7 5.8E-05 35.8 1.8 19 182-204 3-21 (198)
204 2b8t_A Thymidine kinase; deoxy 70.3 3.5 0.00012 35.0 3.7 86 182-300 11-100 (223)
205 2qp9_X Vacuolar protein sortin 69.3 1.2 4.2E-05 40.5 0.7 19 182-204 83-101 (355)
206 2w58_A DNAI, primosome compone 69.2 1.8 6E-05 35.5 1.6 25 184-213 55-79 (202)
207 4gp7_A Metallophosphoesterase; 69.2 1.7 5.9E-05 34.8 1.5 20 182-205 8-27 (171)
208 1qhx_A CPT, protein (chloramph 68.8 1.8 6.2E-05 34.5 1.6 18 183-204 3-20 (178)
209 1zp6_A Hypothetical protein AT 68.7 1.7 6E-05 35.0 1.5 18 182-203 8-25 (191)
210 4a4z_A Antiviral helicase SKI2 68.6 1 3.5E-05 47.0 0.0 59 59-124 405-478 (997)
211 1xx6_A Thymidine kinase; NESG, 68.5 4.3 0.00015 33.5 3.9 34 192-233 13-46 (191)
212 1d2n_A N-ethylmaleimide-sensit 68.5 1.8 6.1E-05 37.4 1.5 19 182-204 63-81 (272)
213 2pt7_A CAG-ALFA; ATPase, prote 68.3 1.7 5.8E-05 39.2 1.4 17 182-202 170-186 (330)
214 2bjv_A PSP operon transcriptio 68.3 2 6.8E-05 36.9 1.8 18 182-203 28-45 (265)
215 3tau_A Guanylate kinase, GMP k 67.8 2 7E-05 35.6 1.7 19 182-204 7-25 (208)
216 2ewv_A Twitching motility prot 67.4 1.9 6.4E-05 39.6 1.5 19 182-204 135-153 (372)
217 3tr0_A Guanylate kinase, GMP k 67.4 2.1 7.1E-05 35.0 1.7 19 182-204 6-24 (205)
218 3hjh_A Transcription-repair-co 67.2 8.9 0.00031 36.5 6.2 53 182-249 13-65 (483)
219 4ag6_A VIRB4 ATPase, type IV s 67.0 3.8 0.00013 37.5 3.6 41 182-234 34-74 (392)
220 3vaa_A Shikimate kinase, SK; s 66.8 2.1 7E-05 35.2 1.5 19 182-204 24-42 (199)
221 4b4t_J 26S protease regulatory 66.8 1.1 3.9E-05 41.7 -0.1 54 133-204 143-199 (405)
222 1ofh_A ATP-dependent HSL prote 66.6 2.3 7.7E-05 37.1 1.9 19 182-204 49-67 (310)
223 2kjq_A DNAA-related protein; s 66.4 2.1 7.2E-05 33.7 1.4 19 182-204 35-53 (149)
224 3b9p_A CG5977-PA, isoform A; A 66.3 2.2 7.4E-05 37.3 1.7 19 182-204 53-71 (297)
225 2qz4_A Paraplegin; AAA+, SPG7, 66.2 2.2 7.4E-05 36.3 1.6 19 182-204 38-56 (262)
226 3cf0_A Transitional endoplasmi 66.1 2.2 7.7E-05 37.6 1.7 19 182-204 48-66 (301)
227 3jvv_A Twitching mobility prot 66.1 2 6.9E-05 39.2 1.5 19 182-204 122-140 (356)
228 2j41_A Guanylate kinase; GMP, 66.1 2.3 7.8E-05 34.7 1.7 19 182-204 5-23 (207)
229 4b4t_L 26S protease subunit RP 65.4 1 3.6E-05 42.4 -0.7 54 133-204 176-232 (437)
230 3uk6_A RUVB-like 2; hexameric 65.3 2.1 7.2E-05 38.5 1.4 18 183-204 70-87 (368)
231 3ney_A 55 kDa erythrocyte memb 65.3 2.2 7.6E-05 35.5 1.4 18 182-203 18-35 (197)
232 3hws_A ATP-dependent CLP prote 65.2 2.6 8.8E-05 38.2 2.0 19 182-204 50-68 (363)
233 2qor_A Guanylate kinase; phosp 65.1 2.4 8.3E-05 34.9 1.7 18 182-203 11-28 (204)
234 2r62_A Cell division protease 65.0 2.3 8E-05 36.4 1.6 18 183-204 44-61 (268)
235 3a00_A Guanylate kinase, GMP k 65.0 2.7 9.2E-05 34.1 1.9 13 192-204 6-18 (186)
236 1kag_A SKI, shikimate kinase I 64.8 2.7 9.3E-05 33.2 1.9 18 182-203 3-20 (173)
237 1z6g_A Guanylate kinase; struc 64.8 2.8 9.5E-05 35.1 2.0 19 182-204 22-40 (218)
238 3trf_A Shikimate kinase, SK; a 64.7 2.3 8E-05 34.1 1.5 18 183-204 5-22 (185)
239 1y63_A LMAJ004144AAA protein; 64.6 2.5 8.5E-05 34.2 1.6 18 182-203 9-26 (184)
240 2qgz_A Helicase loader, putati 64.6 2.1 7.3E-05 38.1 1.3 26 183-213 152-177 (308)
241 1w36_B RECB, exodeoxyribonucle 64.5 13 0.00044 39.4 7.4 61 182-247 16-80 (1180)
242 1l8q_A Chromosomal replication 64.3 2.8 9.6E-05 37.2 2.0 18 183-204 37-54 (324)
243 1iy2_A ATP-dependent metallopr 64.0 1.3 4.4E-05 38.5 -0.3 15 186-204 76-90 (278)
244 2chg_A Replication factor C sm 63.9 2.8 9.7E-05 34.0 1.9 15 185-203 40-54 (226)
245 4eun_A Thermoresistant glucoki 63.8 2.7 9.2E-05 34.5 1.7 19 182-204 28-46 (200)
246 2qt1_A Nicotinamide riboside k 63.6 2.6 9E-05 34.6 1.6 25 174-204 14-38 (207)
247 3lw7_A Adenylate kinase relate 63.5 2.5 8.5E-05 33.1 1.4 12 192-203 6-17 (179)
248 4b4t_H 26S protease regulatory 63.3 1.3 4.4E-05 42.1 -0.5 53 133-203 204-259 (467)
249 2v1u_A Cell division control p 63.1 2.7 9.2E-05 37.8 1.7 19 182-204 43-61 (387)
250 1kht_A Adenylate kinase; phosp 63.0 2.6 8.9E-05 33.8 1.4 17 183-203 3-19 (192)
251 3a8t_A Adenylate isopentenyltr 62.9 2.2 7.4E-05 38.8 1.0 16 184-203 41-56 (339)
252 1ojl_A Transcriptional regulat 62.8 3.1 0.00011 36.9 2.0 19 182-204 24-42 (304)
253 1knq_A Gluconate kinase; ALFA/ 62.7 2.7 9.2E-05 33.4 1.5 19 182-204 7-25 (175)
254 1znw_A Guanylate kinase, GMP k 62.7 2.9 0.0001 34.5 1.7 22 177-204 16-37 (207)
255 3b85_A Phosphate starvation-in 62.5 1.9 6.6E-05 36.1 0.5 31 168-204 9-39 (208)
256 3cf2_A TER ATPase, transitiona 62.5 7.2 0.00025 39.6 4.8 56 133-204 472-528 (806)
257 1ex7_A Guanylate kinase; subst 62.4 2.7 9.4E-05 34.6 1.5 16 184-203 2-17 (186)
258 1lv7_A FTSH; alpha/beta domain 62.0 2.8 9.7E-05 35.7 1.6 17 184-204 46-62 (257)
259 1bg2_A Kinesin; motor protein, 61.9 2.8 9.5E-05 37.8 1.5 26 175-204 70-95 (325)
260 3bgw_A DNAB-like replicative h 61.8 7.6 0.00026 36.4 4.6 37 182-230 196-232 (444)
261 1s96_A Guanylate kinase, GMP k 61.6 3.1 0.0001 35.1 1.7 19 182-204 15-33 (219)
262 2zan_A Vacuolar protein sortin 61.4 2 7E-05 40.3 0.6 53 133-204 129-184 (444)
263 2ehv_A Hypothetical protein PH 60.7 3.7 0.00013 34.4 2.1 20 182-205 29-48 (251)
264 3nwn_A Kinesin-like protein KI 60.4 2.9 0.0001 38.2 1.4 27 174-204 96-122 (359)
265 3exa_A TRNA delta(2)-isopenten 60.3 3.2 0.00011 37.3 1.6 12 192-203 8-19 (322)
266 2ze6_A Isopentenyl transferase 60.3 2.9 9.7E-05 36.0 1.2 12 192-203 6-17 (253)
267 1hqc_A RUVB; extended AAA-ATPa 59.9 3.4 0.00012 36.3 1.7 18 183-204 38-55 (324)
268 3c8u_A Fructokinase; YP_612366 59.9 3.1 0.0001 34.4 1.3 18 182-203 21-38 (208)
269 3foz_A TRNA delta(2)-isopenten 59.3 3.5 0.00012 37.0 1.7 12 192-203 15-26 (316)
270 3u4q_B ATP-dependent helicase/ 59.2 8 0.00028 40.9 4.7 37 192-233 6-42 (1166)
271 3hr8_A Protein RECA; alpha and 59.1 7.6 0.00026 35.4 3.9 28 182-214 60-87 (356)
272 2r44_A Uncharacterized protein 59.0 2.5 8.5E-05 37.6 0.7 21 177-203 42-62 (331)
273 3tif_A Uncharacterized ABC tra 58.7 3.8 0.00013 34.9 1.7 18 182-203 30-47 (235)
274 3kb2_A SPBC2 prophage-derived 58.7 3.5 0.00012 32.4 1.4 13 192-204 6-18 (173)
275 3cm0_A Adenylate kinase; ATP-b 58.5 2.9 9.9E-05 33.5 0.9 18 182-203 3-20 (186)
276 3uie_A Adenylyl-sulfate kinase 58.3 3.6 0.00012 33.7 1.5 18 182-203 24-41 (200)
277 3asz_A Uridine kinase; cytidin 58.2 3.5 0.00012 33.8 1.5 19 182-204 5-23 (211)
278 1sxj_E Activator 1 40 kDa subu 57.9 5.7 0.0002 35.4 2.9 13 192-204 41-53 (354)
279 1f9v_A Kinesin-like protein KA 57.8 4.9 0.00017 36.5 2.4 28 174-205 76-103 (347)
280 1tue_A Replication protein E1; 57.7 4.8 0.00016 33.9 2.2 23 185-212 60-82 (212)
281 1um8_A ATP-dependent CLP prote 57.6 4.2 0.00015 36.9 2.0 19 182-204 71-89 (376)
282 3pfi_A Holliday junction ATP-d 57.3 4.4 0.00015 36.0 2.0 17 184-204 56-72 (338)
283 3nbx_X ATPase RAVA; AAA+ ATPas 57.2 3.1 0.00011 39.9 1.0 25 173-203 33-57 (500)
284 1ly1_A Polynucleotide kinase; 57.2 3.8 0.00013 32.4 1.4 12 192-203 7-18 (181)
285 1xp8_A RECA protein, recombina 57.1 9 0.00031 35.0 4.1 28 182-214 73-100 (366)
286 3lnc_A Guanylate kinase, GMP k 57.0 3.1 0.0001 34.9 0.9 19 182-204 26-44 (231)
287 4b4t_I 26S protease regulatory 57.0 2.3 7.9E-05 39.9 0.1 53 133-203 177-232 (437)
288 3t15_A Ribulose bisphosphate c 56.7 4 0.00014 35.8 1.6 16 184-203 37-52 (293)
289 2zr9_A Protein RECA, recombina 56.7 9.3 0.00032 34.6 4.1 26 182-212 60-85 (349)
290 2w0m_A SSO2452; RECA, SSPF, un 56.6 4.8 0.00016 33.1 2.1 18 182-203 22-39 (235)
291 2bdt_A BH3686; alpha-beta prot 56.5 3.4 0.00011 33.3 1.0 13 192-204 7-19 (189)
292 3t0q_A AGR253WP; kinesin, alph 56.2 4.8 0.00016 36.6 2.1 28 174-205 77-104 (349)
293 1u94_A RECA protein, recombina 56.0 9.8 0.00033 34.6 4.1 27 182-213 62-88 (356)
294 2q6t_A DNAB replication FORK h 56.0 9.5 0.00032 35.6 4.2 39 182-231 199-237 (444)
295 4a1f_A DNAB helicase, replicat 55.8 11 0.00037 34.1 4.4 49 182-243 45-93 (338)
296 2ffh_A Protein (FFH); SRP54, s 55.4 15 0.00052 34.2 5.4 13 192-204 103-115 (425)
297 2c9o_A RUVB-like 1; hexameric 55.3 4.2 0.00014 38.2 1.6 19 182-204 62-80 (456)
298 4a74_A DNA repair and recombin 55.3 4.8 0.00017 33.2 1.8 19 182-204 24-42 (231)
299 1ye8_A Protein THEP1, hypothet 55.2 4.5 0.00015 32.8 1.6 13 192-204 5-17 (178)
300 3d8b_A Fidgetin-like protein 1 55.1 4.5 0.00015 36.6 1.7 19 182-204 116-134 (357)
301 3tqf_A HPR(Ser) kinase; transf 55.0 5 0.00017 32.9 1.8 17 182-202 15-31 (181)
302 2pcj_A ABC transporter, lipopr 54.7 4.2 0.00014 34.3 1.3 18 182-203 29-46 (224)
303 1ypw_A Transitional endoplasmi 54.7 8.1 0.00028 39.2 3.7 18 182-203 510-527 (806)
304 3nwj_A ATSK2; P loop, shikimat 54.4 4.8 0.00016 34.7 1.7 19 182-204 47-65 (250)
305 4etp_A Kinesin-like protein KA 54.3 4.7 0.00016 37.5 1.7 27 174-204 132-158 (403)
306 3kta_A Chromosome segregation 54.3 4.7 0.00016 32.2 1.5 13 192-204 31-43 (182)
307 2rhm_A Putative kinase; P-loop 54.0 4.4 0.00015 32.5 1.3 17 183-203 5-21 (193)
308 4fcw_A Chaperone protein CLPB; 54.0 4.6 0.00016 35.2 1.5 16 185-204 49-64 (311)
309 2cvh_A DNA repair and recombin 54.0 5.8 0.0002 32.5 2.1 19 182-204 19-37 (220)
310 2cbz_A Multidrug resistance-as 53.9 5 0.00017 34.1 1.7 19 182-204 30-48 (237)
311 1g8p_A Magnesium-chelatase 38 53.9 3.2 0.00011 36.9 0.5 18 183-204 45-62 (350)
312 1tev_A UMP-CMP kinase; ploop, 53.8 4.3 0.00015 32.5 1.2 13 192-204 8-20 (196)
313 1f2t_A RAD50 ABC-ATPase; DNA d 53.7 5 0.00017 31.4 1.6 12 192-203 28-39 (149)
314 4a14_A Kinesin, kinesin-like p 53.7 4.4 0.00015 36.8 1.4 26 175-204 76-101 (344)
315 3bfn_A Kinesin-like protein KI 53.6 5.2 0.00018 37.0 1.9 25 176-204 92-116 (388)
316 2pez_A Bifunctional 3'-phospho 53.6 4.5 0.00016 32.2 1.3 18 182-203 4-21 (179)
317 3vfd_A Spastin; ATPase, microt 53.6 4.5 0.00015 37.0 1.4 19 182-204 147-165 (389)
318 1sgw_A Putative ABC transporte 53.5 5.8 0.0002 33.3 2.0 19 182-204 34-52 (214)
319 3lre_A Kinesin-like protein KI 53.4 4.6 0.00016 36.8 1.5 27 174-204 97-123 (355)
320 2y65_A Kinesin, kinesin heavy 53.3 4.5 0.00015 37.1 1.4 25 176-204 78-102 (365)
321 2nr8_A Kinesin-like protein KI 53.3 4.7 0.00016 36.9 1.5 27 174-204 95-121 (358)
322 2qby_A CDC6 homolog 1, cell di 53.2 5.3 0.00018 35.7 1.9 19 182-204 44-62 (386)
323 1njg_A DNA polymerase III subu 53.2 4.7 0.00016 33.0 1.4 15 185-203 47-61 (250)
324 1m7g_A Adenylylsulfate kinase; 53.1 5.3 0.00018 32.9 1.7 29 168-203 13-41 (211)
325 2rep_A Kinesin-like protein KI 53.1 5.4 0.00019 36.7 1.9 27 174-204 107-133 (376)
326 3d3q_A TRNA delta(2)-isopenten 53.1 4.4 0.00015 36.8 1.2 12 192-203 12-23 (340)
327 2i3b_A HCR-ntpase, human cance 53.0 5.6 0.00019 32.6 1.8 13 192-204 6-18 (189)
328 1xjc_A MOBB protein homolog; s 52.7 13 0.00045 29.9 4.0 20 192-212 9-28 (169)
329 3b6u_A Kinesin-like protein KI 52.7 4.8 0.00017 37.0 1.5 25 176-204 95-119 (372)
330 1g6h_A High-affinity branched- 52.7 4.8 0.00016 34.7 1.4 19 182-204 32-50 (257)
331 3u06_A Protein claret segregat 52.7 4.6 0.00016 37.6 1.4 27 174-204 130-156 (412)
332 3gbj_A KIF13B protein; kinesin 52.6 4.7 0.00016 36.8 1.4 27 174-204 84-110 (354)
333 3be4_A Adenylate kinase; malar 52.5 5.1 0.00017 33.2 1.5 18 182-203 4-21 (217)
334 3crm_A TRNA delta(2)-isopenten 52.4 4.5 0.00015 36.4 1.2 12 192-203 10-21 (323)
335 1fnn_A CDC6P, cell division co 52.4 5.1 0.00017 36.0 1.6 16 185-204 46-61 (389)
336 3qf7_A RAD50; ABC-ATPase, ATPa 52.3 5 0.00017 36.5 1.6 13 192-204 28-40 (365)
337 4b4t_K 26S protease regulatory 52.1 5.1 0.00017 37.6 1.5 18 183-204 206-223 (428)
338 1n0w_A DNA repair protein RAD5 52.0 6.4 0.00022 32.8 2.1 20 182-205 23-42 (243)
339 2r6a_A DNAB helicase, replicat 51.5 9.9 0.00034 35.6 3.5 27 182-213 202-228 (454)
340 2ff7_A Alpha-hemolysin translo 51.4 5.8 0.0002 34.0 1.7 19 182-204 34-52 (247)
341 3gfo_A Cobalt import ATP-bindi 51.3 5.8 0.0002 34.7 1.7 19 182-204 33-51 (275)
342 2qby_B CDC6 homolog 3, cell di 51.3 5.4 0.00018 35.9 1.6 18 183-204 45-62 (384)
343 2pze_A Cystic fibrosis transme 51.3 5.8 0.0002 33.5 1.7 19 182-204 33-51 (229)
344 2j9r_A Thymidine kinase; TK1, 51.1 15 0.00052 30.8 4.2 35 192-234 33-67 (214)
345 2v54_A DTMP kinase, thymidylat 50.9 5.4 0.00018 32.3 1.4 19 182-204 3-21 (204)
346 3t61_A Gluconokinase; PSI-biol 50.9 5.7 0.00019 32.4 1.5 13 192-204 23-35 (202)
347 2ius_A DNA translocase FTSK; n 50.7 20 0.00069 34.3 5.5 21 182-206 166-186 (512)
348 2c95_A Adenylate kinase 1; tra 50.7 5.8 0.0002 31.8 1.6 18 182-203 8-25 (196)
349 2ghi_A Transport protein; mult 50.6 6.1 0.00021 34.1 1.7 19 182-204 45-63 (260)
350 2r2a_A Uncharacterized protein 50.6 6.2 0.00021 32.7 1.7 13 192-204 10-22 (199)
351 4g1u_C Hemin import ATP-bindin 50.6 6 0.0002 34.4 1.7 18 182-203 36-53 (266)
352 2cdn_A Adenylate kinase; phosp 50.5 6 0.00021 32.2 1.6 18 182-203 19-36 (201)
353 1mv5_A LMRA, multidrug resista 50.3 5.7 0.0002 33.9 1.5 19 182-204 27-45 (243)
354 2plr_A DTMP kinase, probable t 50.2 5.2 0.00018 32.5 1.2 18 182-203 3-20 (213)
355 1ry6_A Internal kinesin; kines 49.9 6.2 0.00021 36.1 1.7 20 182-205 82-103 (360)
356 1ji0_A ABC transporter; ATP bi 49.8 6.3 0.00022 33.5 1.7 19 182-204 31-49 (240)
357 3dc4_A Kinesin-like protein NO 49.8 5.6 0.00019 36.1 1.4 25 176-204 88-112 (344)
358 2v9p_A Replication protein E1; 49.6 7.2 0.00025 34.7 2.1 19 182-204 125-143 (305)
359 1gvn_B Zeta; postsegregational 49.5 5.6 0.00019 34.9 1.3 17 183-203 33-49 (287)
360 2olj_A Amino acid ABC transpor 49.5 5.8 0.0002 34.4 1.4 19 182-204 49-67 (263)
361 1in4_A RUVB, holliday junction 49.5 6.4 0.00022 35.2 1.8 17 184-204 52-68 (334)
362 1rj9_A FTSY, signal recognitio 49.3 6.6 0.00023 34.9 1.8 19 182-204 101-119 (304)
363 1b0u_A Histidine permease; ABC 49.1 6.6 0.00023 34.0 1.7 19 182-204 31-49 (262)
364 2iyv_A Shikimate kinase, SK; t 49.1 6.9 0.00024 31.2 1.8 12 192-203 7-18 (184)
365 2h58_A Kinesin-like protein KI 48.9 5.9 0.0002 35.7 1.4 27 174-204 72-98 (330)
366 1htw_A HI0065; nucleotide-bind 48.9 5.7 0.0002 31.5 1.2 18 182-203 32-49 (158)
367 1aky_A Adenylate kinase; ATP:A 48.9 6 0.00021 32.7 1.4 18 182-203 3-20 (220)
368 2yvu_A Probable adenylyl-sulfa 48.7 6.3 0.00022 31.6 1.5 19 182-204 12-30 (186)
369 1cke_A CK, MSSA, protein (cyti 48.6 6.5 0.00022 32.5 1.6 12 192-203 10-21 (227)
370 3eph_A TRNA isopentenyltransfe 48.4 6.6 0.00023 36.5 1.7 20 192-212 7-26 (409)
371 2d2e_A SUFC protein; ABC-ATPas 48.2 6.9 0.00024 33.5 1.7 19 182-204 28-46 (250)
372 2dhr_A FTSH; AAA+ protein, hex 48.2 8.5 0.00029 36.8 2.5 15 186-204 67-81 (499)
373 3b9q_A Chloroplast SRP recepto 48.2 6.3 0.00022 34.9 1.5 19 182-204 99-117 (302)
374 2zu0_C Probable ATP-dependent 48.1 7 0.00024 33.9 1.7 19 182-204 45-63 (267)
375 3cob_A Kinesin heavy chain-lik 48.1 6.1 0.00021 36.2 1.4 27 174-204 71-97 (369)
376 1zak_A Adenylate kinase; ATP:A 48.1 7 0.00024 32.4 1.7 18 182-203 4-21 (222)
377 2ihy_A ABC transporter, ATP-bi 48.0 6.2 0.00021 34.5 1.4 19 182-204 46-64 (279)
378 2bbw_A Adenylate kinase 4, AK4 47.9 6.1 0.00021 33.4 1.3 17 184-204 28-44 (246)
379 1vpl_A ABC transporter, ATP-bi 47.9 7.1 0.00024 33.7 1.7 19 182-204 40-58 (256)
380 1goj_A Kinesin, kinesin heavy 47.8 6.3 0.00021 35.9 1.4 25 176-204 74-98 (355)
381 3hu3_A Transitional endoplasmi 47.8 6.8 0.00023 37.3 1.7 19 182-204 237-255 (489)
382 2iut_A DNA translocase FTSK; n 47.7 22 0.00075 34.5 5.3 26 183-212 214-239 (574)
383 1x88_A Kinesin-like protein KI 47.7 6.2 0.00021 36.0 1.4 26 175-204 81-106 (359)
384 1nks_A Adenylate kinase; therm 47.7 6.1 0.00021 31.5 1.2 12 192-203 6-17 (194)
385 2nq2_C Hypothetical ABC transp 47.6 7.1 0.00024 33.6 1.7 19 182-204 30-48 (253)
386 2qi9_C Vitamin B12 import ATP- 47.6 7.2 0.00025 33.5 1.7 19 182-204 25-43 (249)
387 2vvg_A Kinesin-2; motor protei 47.5 6.4 0.00022 35.8 1.4 25 176-204 83-107 (350)
388 2yz2_A Putative ABC transporte 47.5 7.2 0.00025 33.8 1.7 19 182-204 32-50 (266)
389 4e22_A Cytidylate kinase; P-lo 47.2 7.4 0.00025 33.2 1.7 19 182-204 26-44 (252)
390 1v8k_A Kinesin-like protein KI 47.1 7.1 0.00024 36.3 1.7 25 176-204 148-172 (410)
391 3auy_A DNA double-strand break 47.1 6.8 0.00023 35.6 1.6 13 192-204 30-42 (371)
392 2ixe_A Antigen peptide transpo 46.9 7.5 0.00026 33.8 1.7 19 182-204 44-62 (271)
393 1jjv_A Dephospho-COA kinase; P 46.8 6.8 0.00023 31.9 1.4 13 192-204 7-19 (206)
394 1t5c_A CENP-E protein, centrom 46.8 6.6 0.00023 35.7 1.4 26 175-204 70-95 (349)
395 1via_A Shikimate kinase; struc 46.7 7.5 0.00026 30.8 1.6 12 192-203 9-20 (175)
396 1zd8_A GTP:AMP phosphotransfer 46.7 6.9 0.00024 32.6 1.4 17 183-203 7-23 (227)
397 1rz3_A Hypothetical protein rb 46.6 7.2 0.00025 31.9 1.5 13 192-204 27-39 (201)
398 2if2_A Dephospho-COA kinase; a 46.6 7.3 0.00025 31.6 1.5 13 192-204 6-18 (204)
399 2zfi_A Kinesin-like protein KI 46.6 6.7 0.00023 35.9 1.4 26 175-204 82-107 (366)
400 1np6_A Molybdopterin-guanine d 46.5 6.4 0.00022 31.8 1.2 20 192-212 11-30 (174)
401 1e6c_A Shikimate kinase; phosp 46.5 7.1 0.00024 30.6 1.4 12 192-203 7-18 (173)
402 3fb4_A Adenylate kinase; psych 46.4 7 0.00024 32.1 1.4 13 192-204 5-17 (216)
403 1w4r_A Thymidine kinase; type 46.2 17 0.00058 30.1 3.7 33 192-232 25-57 (195)
404 2wbe_C Bipolar kinesin KRP-130 46.0 6.9 0.00024 35.9 1.4 25 176-204 94-118 (373)
405 1qf9_A UMP/CMP kinase, protein 46.0 7.2 0.00025 31.0 1.4 12 192-203 11-22 (194)
406 1nlf_A Regulatory protein REPA 45.9 8.6 0.00029 33.2 2.0 25 175-205 24-48 (279)
407 2z4s_A Chromosomal replication 45.9 8.1 0.00028 36.1 1.9 18 183-204 130-147 (440)
408 2wwf_A Thymidilate kinase, put 45.9 7.6 0.00026 31.6 1.6 18 182-203 9-26 (212)
409 2bwj_A Adenylate kinase 5; pho 45.8 7.4 0.00025 31.3 1.5 17 183-203 12-28 (199)
410 2heh_A KIF2C protein; kinesin, 45.8 7 0.00024 36.1 1.4 26 176-205 128-153 (387)
411 2f1r_A Molybdopterin-guanine d 45.8 5.2 0.00018 32.3 0.5 13 192-204 7-19 (171)
412 2w00_A HSDR, R.ECOR124I; ATP-b 45.6 5.9 0.0002 41.5 1.0 71 66-152 644-718 (1038)
413 2px0_A Flagellar biosynthesis 45.6 8.4 0.00029 34.0 1.9 19 182-204 104-122 (296)
414 1ak2_A Adenylate kinase isoenz 45.5 7.3 0.00025 32.6 1.4 18 182-203 15-32 (233)
415 1sxj_D Activator 1 41 kDa subu 45.5 8.5 0.00029 34.1 1.9 16 184-203 59-74 (353)
416 1q57_A DNA primase/helicase; d 45.3 15 0.0005 34.9 3.6 50 182-243 241-290 (503)
417 3nh6_A ATP-binding cassette SU 45.2 7.8 0.00027 34.5 1.6 19 182-204 79-97 (306)
418 2jeo_A Uridine-cytidine kinase 44.9 7.9 0.00027 32.7 1.5 13 192-204 30-42 (245)
419 1nn5_A Similar to deoxythymidy 44.8 8 0.00027 31.5 1.5 19 182-204 8-26 (215)
420 1cr0_A DNA primase/helicase; R 44.7 9.4 0.00032 33.2 2.1 19 182-204 34-52 (296)
421 3dl0_A Adenylate kinase; phosp 44.7 7.7 0.00026 31.8 1.4 13 192-204 5-17 (216)
422 3m6a_A ATP-dependent protease 44.4 8.2 0.00028 37.2 1.7 19 182-204 107-125 (543)
423 1knx_A Probable HPR(Ser) kinas 44.0 8.9 0.00031 34.3 1.8 20 182-205 146-166 (312)
424 1sxj_A Activator 1 95 kDa subu 43.9 8.1 0.00028 36.9 1.6 17 184-204 78-94 (516)
425 3pxg_A Negative regulator of g 43.9 8 0.00027 36.5 1.5 19 182-204 200-218 (468)
426 2bbs_A Cystic fibrosis transme 43.7 8.9 0.0003 33.8 1.7 19 182-204 63-81 (290)
427 1zuh_A Shikimate kinase; alpha 43.6 8.1 0.00028 30.3 1.3 13 192-204 12-24 (168)
428 3cmu_A Protein RECA, recombina 43.6 45 0.0015 37.5 7.4 39 182-232 1426-1464(2050)
429 3qks_A DNA double-strand break 43.3 8.9 0.0003 31.6 1.6 13 192-204 28-40 (203)
430 2jaq_A Deoxyguanosine kinase; 43.3 7.8 0.00027 31.2 1.2 12 192-203 5-16 (205)
431 1ukz_A Uridylate kinase; trans 43.1 8.5 0.00029 31.2 1.4 13 192-204 20-32 (203)
432 1g41_A Heat shock protein HSLU 42.7 9.6 0.00033 35.8 1.9 18 183-204 50-67 (444)
433 3pvs_A Replication-associated 42.5 8.5 0.00029 36.1 1.5 16 185-204 52-67 (447)
434 2pt5_A Shikimate kinase, SK; a 42.4 8.8 0.0003 29.9 1.4 12 192-203 5-16 (168)
435 2owm_A Nckin3-434, related to 42.4 8.4 0.00029 36.2 1.4 26 175-204 129-154 (443)
436 4h1g_A Maltose binding protein 42.3 8.2 0.00028 38.6 1.4 27 174-204 454-480 (715)
437 1z5z_A Helicase of the SNF2/RA 42.2 64 0.0022 27.7 7.1 64 196-270 93-156 (271)
438 2ce7_A Cell division protein F 42.1 9.1 0.00031 36.3 1.6 17 184-204 50-66 (476)
439 2chq_A Replication factor C sm 41.9 10 0.00035 32.8 1.9 12 192-203 43-54 (319)
440 3aez_A Pantothenate kinase; tr 41.5 9.2 0.00032 34.0 1.5 19 182-204 89-107 (312)
441 1uf9_A TT1252 protein; P-loop, 41.3 9.2 0.00032 30.8 1.4 13 192-204 13-25 (203)
442 2pbr_A DTMP kinase, thymidylat 41.2 9.4 0.00032 30.4 1.4 12 192-203 5-16 (195)
443 2pjz_A Hypothetical protein ST 41.2 10 0.00035 32.8 1.7 18 183-204 30-47 (263)
444 2og2_A Putative signal recogni 41.2 9.4 0.00032 34.8 1.5 19 182-204 156-174 (359)
445 2vli_A Antibiotic resistance p 40.9 7.1 0.00024 30.9 0.6 18 183-204 5-22 (183)
446 3k1j_A LON protease, ATP-depen 40.8 11 0.00037 36.8 2.0 19 182-204 59-77 (604)
447 3qkt_A DNA double-strand break 40.8 9.9 0.00034 34.0 1.6 14 192-205 28-41 (339)
448 2p5t_B PEZT; postsegregational 40.7 7.5 0.00026 33.1 0.7 18 182-203 31-48 (253)
449 1iqp_A RFCS; clamp loader, ext 40.5 10 0.00035 33.0 1.6 16 185-204 48-63 (327)
450 2z0h_A DTMP kinase, thymidylat 40.4 9.3 0.00032 30.6 1.2 13 192-204 5-17 (197)
451 2vp4_A Deoxynucleoside kinase; 40.3 9.1 0.00031 32.0 1.2 17 182-202 19-35 (230)
452 3f9v_A Minichromosome maintena 40.1 12 0.00042 36.5 2.2 15 185-203 329-343 (595)
453 3a4m_A L-seryl-tRNA(SEC) kinas 39.9 9.8 0.00033 32.6 1.3 12 192-203 9-20 (260)
454 3tlx_A Adenylate kinase 2; str 39.9 9.2 0.00032 32.4 1.2 18 182-203 28-45 (243)
455 3io5_A Recombination and repai 39.5 24 0.00082 31.8 3.8 21 192-213 33-53 (333)
456 1vht_A Dephospho-COA kinase; s 39.5 10 0.00035 31.2 1.4 13 192-204 9-21 (218)
457 3e2i_A Thymidine kinase; Zn-bi 39.4 24 0.0008 29.8 3.6 34 192-233 33-66 (219)
458 1z47_A CYSA, putative ABC-tran 39.3 10 0.00035 34.5 1.4 19 182-204 40-58 (355)
459 3fvq_A Fe(3+) IONS import ATP- 39.3 11 0.00039 34.3 1.7 18 182-203 29-46 (359)
460 2onk_A Molybdate/tungstate ABC 39.1 11 0.00038 32.1 1.6 13 192-204 29-41 (240)
461 3e70_C DPA, signal recognition 39.0 11 0.00037 33.8 1.6 19 182-204 128-146 (328)
462 1ypw_A Transitional endoplasmi 38.8 10 0.00035 38.5 1.5 19 182-204 237-255 (806)
463 1pui_A ENGB, probable GTP-bind 38.7 11 0.00039 30.4 1.5 18 182-203 25-42 (210)
464 3sr0_A Adenylate kinase; phosp 38.4 10 0.00036 31.4 1.2 11 192-202 5-15 (206)
465 1sq5_A Pantothenate kinase; P- 38.2 11 0.00038 33.2 1.5 19 182-204 79-97 (308)
466 3pxi_A Negative regulator of g 38.1 11 0.00037 37.8 1.5 19 182-204 200-218 (758)
467 1e4v_A Adenylate kinase; trans 38.1 11 0.00038 30.9 1.4 12 192-203 5-16 (214)
468 3rlf_A Maltose/maltodextrin im 37.6 11 0.00039 34.6 1.4 18 182-203 28-45 (381)
469 4a82_A Cystic fibrosis transme 37.5 11 0.00038 36.5 1.4 18 182-203 366-383 (578)
470 3gd7_A Fusion complex of cysti 37.5 12 0.00042 34.4 1.7 19 182-204 46-64 (390)
471 1u0j_A DNA replication protein 37.5 13 0.00044 32.4 1.7 44 144-205 73-122 (267)
472 1a5t_A Delta prime, HOLB; zinc 37.2 13 0.00044 33.1 1.7 42 168-214 4-50 (334)
473 2grj_A Dephospho-COA kinase; T 37.1 12 0.00041 30.6 1.4 13 192-204 17-29 (192)
474 2yyz_A Sugar ABC transporter, 36.9 13 0.00045 33.8 1.7 19 182-204 28-46 (359)
475 1odf_A YGR205W, hypothetical 3 36.8 13 0.00043 32.7 1.6 13 192-204 36-48 (290)
476 1sxj_C Activator 1 40 kDa subu 36.7 16 0.00055 32.4 2.3 13 192-204 51-63 (340)
477 2zpa_A Uncharacterized protein 36.6 20 0.00069 35.5 3.1 62 166-242 175-236 (671)
478 2xb4_A Adenylate kinase; ATP-b 36.5 11 0.00039 31.2 1.2 12 192-203 5-16 (223)
479 1r6b_X CLPA protein; AAA+, N-t 36.3 12 0.00042 37.3 1.6 19 182-204 206-224 (758)
480 2it1_A 362AA long hypothetical 36.3 13 0.00046 33.8 1.7 19 182-204 28-46 (362)
481 1svm_A Large T antigen; AAA+ f 36.3 12 0.00041 34.3 1.4 18 182-203 168-185 (377)
482 1vma_A Cell division protein F 36.1 13 0.00044 33.0 1.5 19 182-204 103-121 (306)
483 1gtv_A TMK, thymidylate kinase 36.1 6.9 0.00024 31.9 -0.3 12 192-203 5-16 (214)
484 3umf_A Adenylate kinase; rossm 35.7 12 0.00041 31.4 1.2 11 192-202 34-44 (217)
485 1jr3_A DNA polymerase III subu 35.5 13 0.00044 33.1 1.5 13 192-204 43-55 (373)
486 3sop_A Neuronal-specific septi 35.5 13 0.00043 32.3 1.3 13 192-204 7-19 (270)
487 3d31_A Sulfate/molybdate ABC t 35.3 12 0.00041 33.9 1.2 19 182-204 25-43 (348)
488 1sxj_B Activator 1 37 kDa subu 35.3 15 0.00052 31.8 1.9 15 185-203 44-58 (323)
489 3b60_A Lipid A export ATP-bind 35.3 12 0.00043 36.2 1.4 19 182-204 368-386 (582)
490 1q3t_A Cytidylate kinase; nucl 35.2 15 0.00052 30.7 1.8 19 182-204 15-33 (236)
491 2h17_A ADP-ribosylation factor 35.2 11 0.00036 29.8 0.7 17 182-202 20-36 (181)
492 1ko7_A HPR kinase/phosphatase; 35.1 15 0.00051 32.8 1.8 21 182-206 143-164 (314)
493 3tqc_A Pantothenate kinase; bi 35.0 14 0.00047 33.1 1.6 21 192-214 97-117 (321)
494 1g29_1 MALK, maltose transport 35.0 14 0.00049 33.7 1.7 19 182-204 28-46 (372)
495 1tf7_A KAIC; homohexamer, hexa 34.7 22 0.00076 33.8 3.1 28 182-213 38-65 (525)
496 1v43_A Sugar-binding transport 34.6 15 0.00051 33.6 1.7 19 182-204 36-54 (372)
497 2orv_A Thymidine kinase; TP4A 34.5 30 0.001 29.4 3.5 34 192-233 24-57 (234)
498 2l8b_A Protein TRAI, DNA helic 34.2 54 0.0019 26.9 4.9 64 168-242 36-99 (189)
499 1lw7_A Transcriptional regulat 33.8 15 0.00053 33.0 1.7 17 183-203 170-186 (365)
500 4eaq_A DTMP kinase, thymidylat 33.7 13 0.00045 31.2 1.1 18 182-203 25-42 (229)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=9.8e-37 Score=270.54 Aligned_cols=192 Identities=33% Similarity=0.555 Sum_probs=172.7
Q ss_pred CCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcc
Q psy10677 108 GKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFI 187 (317)
Q Consensus 108 ~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi 187 (317)
.+++++++.+++.+++.+.|.+.|.|+.+|+++++++.++++|.+.||..| +++|.++||.++ +|+|++
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~g~~~l 70 (242)
T 3fe2_A 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEP---------TAIQAQGWPVAL--SGLDMV 70 (242)
T ss_dssp ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSC---------CHHHHHHHHHHH--HTCCEE
T ss_pred CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE
Confidence 346789999999999999999999999999999999999999999999999 999999999999 999999
Q ss_pred cccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHH
Q psy10677 188 SVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267 (317)
Q Consensus 188 ~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~ 267 (317)
++||||||||++|++|++.++...+......++++||++|||+||.|+++.++++.+..++++.+++||.+...+.
T Consensus 71 ----~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 146 (242)
T 3fe2_A 71 ----GVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI 146 (242)
T ss_dssp ----EEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHH
T ss_pred ----EECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHH
Confidence 9999999999999999999998765545567899999999999999999999999999999999999999988877
Q ss_pred HHcc---CcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 268 ILLR---ILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 268 ~~~~---~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
..+. +|+||||++|.+++..+ .+++.++||||+|++ .||.++....+
T Consensus 147 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-~~~~~~~~~i~ 201 (242)
T 3fe2_A 147 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD-MGFEPQIRKIV 201 (242)
T ss_dssp HHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHH-TTCHHHHHHHH
T ss_pred HHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhh-hCcHHHHHHHH
Confidence 7664 39999999999998865 566788999999999 99988766543
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.1e-35 Score=281.59 Aligned_cols=179 Identities=21% Similarity=0.299 Sum_probs=163.1
Q ss_pred CCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChh
Q psy10677 121 HNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRS 200 (317)
Q Consensus 121 ~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGK 200 (317)
..+.+.|.++|.|+.+|++++|++.++++|++.||..| ||+|.++||.++ +|+|++ ++|||||||
T Consensus 42 ~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p---------t~iQ~~ai~~i~--~g~d~i----~~a~TGsGK 106 (434)
T 2db3_A 42 IPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIP---------TPIQKCSIPVIS--SGRDLM----ACAQTGSGK 106 (434)
T ss_dssp SCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSH
T ss_pred ceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--cCCCEE----EECCCCCCc
Confidence 35778999999999999999999999999999999999 999999999999 999999 999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEEC
Q psy10677 201 VFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSAT 277 (317)
Q Consensus 201 Tla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~T 277 (317)
|+||++|+++++...+......++++||++||||||.|+++.+++++...++++.+++||.+...+...+.. |+|+|
T Consensus 107 T~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~T 186 (434)
T 2db3_A 107 TAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIAT 186 (434)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEEC
T ss_pred hHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEC
Confidence 999999999999876543445689999999999999999999999999889999999999999888777654 89999
Q ss_pred cHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 278 NTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 278 P~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
||+|.+++.++ .+++.++||||+|++ +||.++....+
T Consensus 187 p~~l~~~l~~~~~~l~~~~~lVlDEah~~~~-~gf~~~~~~i~ 228 (434)
T 2db3_A 187 PGRLLDFVDRTFITFEDTRFVVLDEADRMLD-MGFSEDMRRIM 228 (434)
T ss_dssp HHHHHHHHHTTSCCCTTCCEEEEETHHHHTS-TTTHHHHHHHH
T ss_pred hHHHHHHHHhCCcccccCCeEEEccHhhhhc-cCcHHHHHHHH
Confidence 99999999875 466788999999999 99988876653
No 3
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=7.8e-32 Score=240.27 Aligned_cols=178 Identities=21% Similarity=0.302 Sum_probs=156.5
Q ss_pred CceeecCCCCC--CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCCh
Q psy10677 122 NITLIGQNIPK--PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSR 199 (317)
Q Consensus 122 ~i~~~g~~~~~--~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsG 199 (317)
.+.+.|...|. ++.+|++++|++.++++|++.||..| +++|.++||.++ +|+|++ ++||||||
T Consensus 8 ~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~i~--~~~~~l----~~a~TGsG 72 (253)
T 1wrb_A 8 PVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRP---------TPIQKNAIPAIL--EHRDIM----ACAQTGSG 72 (253)
T ss_dssp CCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSS
T ss_pred ceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCCh
Confidence 45668888887 89999999999999999999999999 999999999999 999999 99999999
Q ss_pred hHHHHHHHHHHHHHcCCCC----CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---
Q psy10677 200 SVFTYILPALYHILKMPKL----EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI--- 272 (317)
Q Consensus 200 KTla~~lp~l~~l~~~~~~----~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--- 272 (317)
||++|++|+++++...... ....++++||++|||+||.|+++.++++....++++..++||.+...+...+..
T Consensus 73 KT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 152 (253)
T 1wrb_A 73 KTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCH 152 (253)
T ss_dssp HHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCC
Confidence 9999999999999764311 123468999999999999999999999999889999999999998887776654
Q ss_pred cEEECcHHHHHHHhcCC-----CCCCCCchhHHHhhhcCCcHHHHhhc
Q psy10677 273 LTSATNTSLGIYLQQND-----AHSPCLSVWRRLQDILGLTEETCVNV 315 (317)
Q Consensus 273 ilv~TP~~l~~~l~~~~-----~~~~~lde~d~l~~~~gf~~~~~~~~ 315 (317)
|+|+||++|.+++..+. +++.++||||+|++ .||.++....+
T Consensus 153 Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i~ 199 (253)
T 1wrb_A 153 LLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLD-MGFEPQIRKII 199 (253)
T ss_dssp EEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHH-TTCHHHHHHHH
T ss_pred EEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHh-CchHHHHHHHH
Confidence 99999999999998764 45788999999999 89988766543
No 4
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=1.8e-32 Score=251.08 Aligned_cols=172 Identities=15% Similarity=0.193 Sum_probs=146.3
Q ss_pred CceeecCCCCCC---cccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC--cCcccccceeccC
Q psy10677 122 NITLIGQNIPKP---VKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA--KKFISVLQKKAEV 196 (317)
Q Consensus 122 ~i~~~g~~~~~~---~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~t 196 (317)
.+.+.+.+.+.| +.+|++++|++.++++|.++||..| |++|.++||.++ .| +|++ ++|||
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~p---------t~iQ~~ai~~il--~~~~~~~l----~~a~T 140 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRP---------SKIQENALPLML--AEPPQNLI----AQSQS 140 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHT--SSSCCCEE----EECCT
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHH--cCCCCeEE----EECCC
Confidence 455666665554 5789999999999999999999999 999999999999 76 9999 99999
Q ss_pred CChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccCcEE
Q psy10677 197 QSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRILTS 275 (317)
Q Consensus 197 GsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~ilv 275 (317)
|||||+||++|+++++... ..+|++|||+||||||.|+++.++.+.+.. ++++..++||.+.......-.+|+|
T Consensus 141 GsGKT~a~~lp~l~~l~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV 215 (300)
T 3fmo_B 141 GTGKTAAFVLAMLSQVEPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVI 215 (300)
T ss_dssp TSSHHHHHHHHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEE
T ss_pred CCCccHHHHHHHHHhhhcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEE
Confidence 9999999999999998653 357899999999999999999999999865 7899999999876544433334999
Q ss_pred ECcHHHHHHHhc-C-----CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 276 ATNTSLGIYLQQ-N-----DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 276 ~TP~~l~~~l~~-~-----~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
||||+|++++.+ + .+.++++||||+|++..||.+....
T Consensus 216 ~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~ 259 (300)
T 3fmo_B 216 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 259 (300)
T ss_dssp ECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHH
T ss_pred ECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHH
Confidence 999999999965 2 5778899999999986677665543
No 5
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.8e-32 Score=243.09 Aligned_cols=183 Identities=19% Similarity=0.260 Sum_probs=157.7
Q ss_pred HHHHHHHHCCceeecCCCCCCcccccCC----CCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCccc
Q psy10677 113 EIDSFRKEHNITLIGQNIPKPVKTLDET----NIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFIS 188 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g~~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~ 188 (317)
+++.+++.+++.+.|.+.|.|+.+|+++ ++++.++++|.+.||..| +++|.+++|.++ +|+|++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l- 70 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMP---------TPIQMQAIPVML--HGRELL- 70 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE-
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE-
Confidence 5889999999999999999999999987 899999999999999999 999999999999 999999
Q ss_pred ccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHH
Q psy10677 189 VLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVI 268 (317)
Q Consensus 189 ~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~ 268 (317)
++||||||||++|++|++.++... ...++++||++||++||.|+++.++++....++++..++||........
T Consensus 71 ---~~a~TGsGKT~~~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (245)
T 3dkp_A 71 ---ASAPTGSGKTLAFSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFG 143 (245)
T ss_dssp ---EECCTTSCHHHHHHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTS
T ss_pred ---EECCCCCcHHHHHHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhh
Confidence 999999999999999999998643 2357899999999999999999999999988999888887765433322
Q ss_pred Hcc----CcEEECcHHHHHHHhcC-------CCCCCCCchhHHHhhh--cCCcHHHHhh
Q psy10677 269 LLR----ILTSATNTSLGIYLQQN-------DAHSPCLSVWRRLQDI--LGLTEETCVN 314 (317)
Q Consensus 269 ~~~----~ilv~TP~~l~~~l~~~-------~~~~~~lde~d~l~~~--~gf~~~~~~~ 314 (317)
... +|+||||++|.+++..+ .+.+.++||||++++. .||.++....
T Consensus 144 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i 202 (245)
T 3dkp_A 144 PKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASI 202 (245)
T ss_dssp TTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHH
T ss_pred hhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHH
Confidence 211 38999999999999875 4667899999999984 4666665543
No 6
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.97 E-value=2.2e-31 Score=233.59 Aligned_cols=172 Identities=24% Similarity=0.333 Sum_probs=142.4
Q ss_pred ecCCCCCCcccccC-CCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 126 IGQNIPKPVKTLDE-TNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 126 ~g~~~~~~~~~f~~-~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..+|.|..+|++ +++++.++++|.+.||..| +++|.++||.++ +|+|++ ++||||||||++|
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----~~apTGsGKT~~~ 74 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKP---------TPIQSQAWPIIL--QGIDLI----VVAQTGTGKTLSY 74 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHH
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHH
Confidence 45678999999999 7999999999999999999 999999999999 999999 9999999999999
Q ss_pred HHHHHHHHHcCCC-CCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc---CcEEECcHH
Q psy10677 205 ILPALYHILKMPK-LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR---ILTSATNTS 280 (317)
Q Consensus 205 ~lp~l~~l~~~~~-~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~---~ilv~TP~~ 280 (317)
++|++.++..... .....++++||++||++||.|+++.++++.. .++++..++||.+...+...+. +|+|+||++
T Consensus 75 ~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~ 153 (228)
T 3iuy_A 75 LMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGR 153 (228)
T ss_dssp HHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCC-TTCCEEEECC------CHHHHHSCCSEEEECHHH
T ss_pred HHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 9999998865421 1123678999999999999999999999873 5899999999998877666554 499999999
Q ss_pred HHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 281 LGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 281 l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
+.+++..+ .+++.++||||++++ .||.++....
T Consensus 154 l~~~~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i 191 (228)
T 3iuy_A 154 LNDLQMNNSVNLRSITYLVIDEADKMLD-MEFEPQIRKI 191 (228)
T ss_dssp HHHHHHTTCCCCTTCCEEEECCHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHcCCcCcccceEEEEECHHHHhc-cchHHHHHHH
Confidence 99988875 466788999999999 8998776554
No 7
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=1e-30 Score=229.97 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=142.0
Q ss_pred ecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHH
Q psy10677 126 IGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 126 ~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
.|...|.+..+|+++++++.+.++|++.||..| +++|.+++|.++ +|+|++ ++||||||||++|+
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERP---------SPVQLKAIPLGR--CGLDLI----VQAKSGTGKTCVFS 79 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSHHHHHH
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCCcHHHHHH
Confidence 466677888999999999999999999999999 999999999999 999999 99999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC--cEEECcHHHH
Q psy10677 206 LPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI--LTSATNTSLG 282 (317)
Q Consensus 206 lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~ 282 (317)
+|++.++... ..++++||++||++||.|+++.++++.... ++++.+++||.+...+...+.. |+|+||++|.
T Consensus 80 l~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~ 154 (230)
T 2oxc_A 80 TIALDSLVLE-----NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIK 154 (230)
T ss_dssp HHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHH
Confidence 9999988643 346899999999999999999999998765 8999999999998887776655 9999999999
Q ss_pred HHHhcC-----CCCCCCCchhHHHhhhcC-CcHHHHh
Q psy10677 283 IYLQQN-----DAHSPCLSVWRRLQDILG-LTEETCV 313 (317)
Q Consensus 283 ~~l~~~-----~~~~~~lde~d~l~~~~g-f~~~~~~ 313 (317)
+++..+ .+++.++||||++++ .| |.++...
T Consensus 155 ~~~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~~ 190 (230)
T 2oxc_A 155 QLIELDYLNPGSIRLFILDEADKLLE-EGSFQEQINW 190 (230)
T ss_dssp HHHHTTSSCGGGCCEEEESSHHHHHS-TTSSHHHHHH
T ss_pred HHHhcCCcccccCCEEEeCCchHhhc-CcchHHHHHH
Confidence 998875 356788999999999 77 7765543
No 8
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=245.49 Aligned_cols=177 Identities=24% Similarity=0.306 Sum_probs=156.8
Q ss_pred CceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhH
Q psy10677 122 NITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSV 201 (317)
Q Consensus 122 ~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKT 201 (317)
.+...|.++|.++.+|++++|++.++++|...||..| ||+|.++||.++ +|+|++ ++||||||||
T Consensus 2 ~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~---------~~~Q~~~i~~i~--~~~~~l----v~a~TGsGKT 66 (417)
T 2i4i_A 2 MVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRP---------TPVQKHAIPIIK--EKRDLM----ACAQTGSGKT 66 (417)
T ss_dssp CEEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHH
T ss_pred CcccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHc--cCCCEE----EEcCCCCHHH
Confidence 3567899999999999999999999999999999999 999999999999 999999 9999999999
Q ss_pred HHHHHHHHHHHHcCCCC-------------CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHH
Q psy10677 202 FTYILPALYHILKMPKL-------------EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVI 268 (317)
Q Consensus 202 la~~lp~l~~l~~~~~~-------------~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~ 268 (317)
++|++|+++++...... ....++++||++|||+||.|+++.++++....++++..++||.+...+..
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 146 (417)
T 2i4i_A 67 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR 146 (417)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH
Confidence 99999999998754321 12345899999999999999999999999988999999999999988877
Q ss_pred HccC---cEEECcHHHHHHHhcCC-----CCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 269 LLRI---LTSATNTSLGIYLQQND-----AHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 269 ~~~~---ilv~TP~~l~~~l~~~~-----~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
.+.. |+|+||++|.+++..+. +++.++||||.+++ .+|.+.....
T Consensus 147 ~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~-~~~~~~~~~i 199 (417)
T 2i4i_A 147 DLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD-MGFEPQIRRI 199 (417)
T ss_dssp HHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHH-TTCHHHHHHH
T ss_pred HhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhc-cCcHHHHHHH
Confidence 7654 99999999999998764 55689999999999 8888776544
No 9
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=228.56 Aligned_cols=181 Identities=17% Similarity=0.235 Sum_probs=153.9
Q ss_pred HHHHHHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCccccc
Q psy10677 111 KEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVL 190 (317)
Q Consensus 111 ~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~ 190 (317)
+++++++++.... ..+.++.+|+++++++.++++|++.||..| +++|.++++.++ +|+|++
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~---------~~~Q~~~i~~~~--~~~~~l--- 66 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLV---------TEIQKQTIGLAL--QGKDVL--- 66 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBC---------CHHHHHHHHHHH--TTCCEE---
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE---
Confidence 5677777776553 124567899999999999999999999999 999999999999 999999
Q ss_pred ceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc
Q psy10677 191 QKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL 270 (317)
Q Consensus 191 ~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~ 270 (317)
++||||||||++|++|+++++..... ....++++||++||++||.|+++.++++....++++.+++||.+...+...+
T Consensus 67 -i~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 144 (236)
T 2pl3_A 67 -GAAKTGSGKTLAFLVPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI 144 (236)
T ss_dssp -EECCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH
T ss_pred -EEeCCCCcHHHHHHHHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC
Confidence 99999999999999999999876432 2235789999999999999999999999988889999999999887776666
Q ss_pred cC--cEEECcHHHHHHHhcC------CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 271 RI--LTSATNTSLGIYLQQN------DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 271 ~~--ilv~TP~~l~~~l~~~------~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
.. |+|+||++|.+++..+ .+++.++||||++++ .||.+....
T Consensus 145 ~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~ 194 (236)
T 2pl3_A 145 NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILD-MGFADTMNA 194 (236)
T ss_dssp TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHH-TTTHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhc-CCcHHHHHH
Confidence 54 9999999999988763 566889999999999 898776554
No 10
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=7.3e-31 Score=232.06 Aligned_cols=168 Identities=21% Similarity=0.195 Sum_probs=136.6
Q ss_pred eecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 125 LIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 125 ~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+...++|.++.+|++++|++.++++|++.||..| +++|.++++.++ +|+|++ ++||||||||++|
T Consensus 20 ~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~---------~~~Q~~ai~~i~--~~~~~l----i~apTGsGKT~~~ 84 (237)
T 3bor_A 20 VIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKP---------SAIQQRAIIPCI--KGYDVI----AQAQSGTGKTATF 84 (237)
T ss_dssp -------CCCCSGGGSCCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--TTCCEE----ECCCSSHHHHHHH
T ss_pred cccCCCCCccCChhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCCcHHHHH
Confidence 3456678889999999999999999999999999 999999999999 999999 9999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc----CcEEECcHH
Q psy10677 205 ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR----ILTSATNTS 280 (317)
Q Consensus 205 ~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~ 280 (317)
++|+++.+... ..++++||++||++||.|+++.++++....++++..++||.+...+...+. .|+|+||++
T Consensus 85 ~l~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~ 159 (237)
T 3bor_A 85 AISILQQLEIE-----FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGR 159 (237)
T ss_dssp HHHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHH
T ss_pred HHHHHHHHHhc-----CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHH
Confidence 99999987543 346899999999999999999999999988999999999998877665553 489999999
Q ss_pred HHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 281 LGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 281 l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
|.+++..+ .+++.++||||++++ .||.+....
T Consensus 160 l~~~l~~~~~~~~~~~~lViDEah~~~~-~~~~~~l~~ 196 (237)
T 3bor_A 160 VFDMLNRRYLSPKWIKMFVLDEADEMLS-RGFKDQIYE 196 (237)
T ss_dssp HHHHHHTTSSCSTTCCEEEEESHHHHHH-TTCHHHHHH
T ss_pred HHHHHHhCCcCcccCcEEEECCchHhhc-cCcHHHHHH
Confidence 99998875 467889999999999 888776544
No 11
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.96 E-value=4.3e-30 Score=229.02 Aligned_cols=162 Identities=22% Similarity=0.255 Sum_probs=145.0
Q ss_pred CCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHH
Q psy10677 132 KPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYH 211 (317)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~ 211 (317)
.+..+|+++++++.++++|++.||..| +++|.+++|.++ +|+|++ ++||||||||++|++|++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~i~--~~~~~l----v~a~TGsGKT~~~~~~il~~ 104 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKP---------TKIQIEAIPLAL--QGRDII----GLAETGSGKTGAFALPILNA 104 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHHHHHHH
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--CCCCEE----EEcCCCCCchhHhHHHHHHH
Confidence 356789999999999999999999999 999999999999 999999 99999999999999999999
Q ss_pred HHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC
Q psy10677 212 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN 288 (317)
Q Consensus 212 l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~ 288 (317)
+... ..++++||++|||+||.|+++.++++....++++.+++||.+...+...+.. |+|+||++|.+++...
T Consensus 105 l~~~-----~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 179 (249)
T 3ber_A 105 LLET-----PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT 179 (249)
T ss_dssp HHHS-----CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHS
T ss_pred HhcC-----CCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC
Confidence 8764 2468999999999999999999999999889999999999998777665543 9999999999988762
Q ss_pred ------CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 289 ------DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 289 ------~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
.+++.++||||++++ .+|.++....
T Consensus 180 ~~~~l~~~~~lViDEah~l~~-~~~~~~l~~i 210 (249)
T 3ber_A 180 KGFNLRALKYLVMDEADRILN-MDFETEVDKI 210 (249)
T ss_dssp TTCCCTTCCEEEECSHHHHHH-TTCHHHHHHH
T ss_pred CCcCccccCEEEEcChhhhhc-cChHHHHHHH
Confidence 467889999999999 8998776544
No 12
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.96 E-value=2.7e-30 Score=225.39 Aligned_cols=160 Identities=19% Similarity=0.273 Sum_probs=140.8
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
|..+|+++++++.++++|++.||..| +++|.++++.++ +|+|++ ++||||||||++|++|+++++
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----v~a~TGsGKT~~~~~~~l~~l 66 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKP---------TEIQERIIPGAL--RGESMV----GQSQTGTGKTHAYLLPIMEKI 66 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--HTCCEE----EECCSSHHHHHHHHHHHHHHC
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHHHHHHHHHH
Confidence 45789999999999999999999999 999999999999 999999 999999999999999999988
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC----CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHH
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM----RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYL 285 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~----~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l 285 (317)
... ..++++||++||++||.|+++.++++.... ++++..++||.+...+...+.. |+|+||+++.+++
T Consensus 67 ~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l 141 (219)
T 1q0u_A 67 KPE-----RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFI 141 (219)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHH
T ss_pred HhC-----cCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHH
Confidence 643 346899999999999999999999999876 7899999999987766655543 8999999999998
Q ss_pred hcC-----CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 286 QQN-----DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 286 ~~~-----~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
..+ .+++.++||||++.+ .||.++...
T Consensus 142 ~~~~~~~~~~~~lViDEah~~~~-~~~~~~l~~ 173 (219)
T 1q0u_A 142 REQALDVHTAHILVVDEADLMLD-MGFITDVDQ 173 (219)
T ss_dssp HTTCCCGGGCCEEEECSHHHHHH-TTCHHHHHH
T ss_pred HcCCCCcCcceEEEEcCchHHhh-hChHHHHHH
Confidence 875 456788999999999 888766544
No 13
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.96 E-value=6.9e-30 Score=229.38 Aligned_cols=163 Identities=21% Similarity=0.245 Sum_probs=140.8
Q ss_pred ccccCCC--CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 135 KTLDETN--IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 135 ~~f~~~~--l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
.+|++++ +++.++++|++.||..| +++|.+++|.++ .|+|++ ++||||||||++|++|+++.+
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----v~a~TGsGKT~~~~l~~l~~l 116 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNM---------TEIQHKSIRPLL--EGRDLL----AAAKTGSGKTLAFLIPAVELI 116 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBC---------CHHHHHHHHHHH--HTCCCE----ECCCTTSCHHHHHHHHHHHHH
T ss_pred CChhHhccccCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCcEE----EEccCCCCchHHHHHHHHHHH
Confidence 4677776 99999999999999999 999999999999 999999 999999999999999999999
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc---CcEEECcHHHHHHHhcC-
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR---ILTSATNTSLGIYLQQN- 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~---~ilv~TP~~l~~~l~~~- 288 (317)
.+.+. ....++++||++|||+||.|+++.++++....++++..++||.....+...+. +|+|||||++.+++...
T Consensus 117 ~~~~~-~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~ 195 (262)
T 3ly5_A 117 VKLRF-MPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP 195 (262)
T ss_dssp HHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT
T ss_pred Hhccc-cccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC
Confidence 87532 12347899999999999999999999999999999999999999887776554 39999999999988764
Q ss_pred -----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 289 -----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 289 -----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
.+.+.++||||+|++ .||.++....
T Consensus 196 ~~~~~~l~~lViDEah~l~~-~~~~~~l~~i 225 (262)
T 3ly5_A 196 GFMYKNLQCLVIDEADRILD-VGFEEELKQI 225 (262)
T ss_dssp TCCCTTCCEEEECSHHHHHH-TTCHHHHHHH
T ss_pred CcccccCCEEEEcChHHHhh-hhHHHHHHHH
Confidence 477889999999999 8998776543
No 14
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.96 E-value=1.2e-29 Score=221.61 Aligned_cols=165 Identities=23% Similarity=0.215 Sum_probs=139.7
Q ss_pred CCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHH
Q psy10677 128 QNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILP 207 (317)
Q Consensus 128 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp 207 (317)
.+.|+++.+|+++++++.++++|++.||..| +++|.++++.++ +|+|++ ++||||||||++|++|
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----v~~pTGsGKT~~~~~~ 71 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEP---------SAIQQRAIMPII--EGHDVL----AQAQSGTGKTGTFSIA 71 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSHHHHHHHH
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCC---------cHHHHHHHHHHh--cCCCEE----EECCCCCcHHHHHHHH
Confidence 3467788999999999999999999999999 999999999999 999999 9999999999999999
Q ss_pred HHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHHH
Q psy10677 208 ALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIYL 285 (317)
Q Consensus 208 ~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~l 285 (317)
+++++... ..++++||++||++||.|+++.++++....++++..++||.+...+...+.. |+|+||++|.+++
T Consensus 72 ~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~ 146 (224)
T 1qde_A 72 ALQRIDTS-----VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNI 146 (224)
T ss_dssp HHHHCCTT-----CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHH
T ss_pred HHHHHhcc-----CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHH
Confidence 99988643 3478999999999999999999999999889999999999988777766544 9999999999998
Q ss_pred hcC-----CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 286 QQN-----DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 286 ~~~-----~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
..+ .+++.++||||++.+ .+|.+....
T Consensus 147 ~~~~~~~~~~~~iViDEah~~~~-~~~~~~l~~ 178 (224)
T 1qde_A 147 QRRRFRTDKIKMFILDEADEMLS-SGFKEQIYQ 178 (224)
T ss_dssp HTTSSCCTTCCEEEEETHHHHHH-TTCHHHHHH
T ss_pred HhCCcchhhCcEEEEcChhHHhh-hhhHHHHHH
Confidence 875 467888999999999 888776544
No 15
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=2.1e-29 Score=217.16 Aligned_cols=158 Identities=17% Similarity=0.182 Sum_probs=141.9
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+|++++|++.++++|++.||..| +++|.++++.++ +|+|++ ++||||||||++|++|++.++..
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----v~apTGsGKT~~~~~~~~~~~~~ 67 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKP---------SPIQEESIPIAL--SGRDIL----ARAKNGTGKSGAYLIPLLERLDL 67 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCSSSTTHHHHHHHHHHHCCT
T ss_pred CChhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHc--cCCCEE----EECCCCCchHHHHHHHHHHHhcc
Confidence 479999999999999999999999 999999999999 999999 99999999999999999998754
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC--
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN-- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~-- 288 (317)
. ..++++||++||++|+.|+++.++++.+.. ++++..++||.+..++...+.. |+|+||+++.+++..+
T Consensus 68 ~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~ 142 (206)
T 1vec_A 68 K-----KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVA 142 (206)
T ss_dssp T-----SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCS
T ss_pred c-----CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCc
Confidence 3 356899999999999999999999999877 7999999999998887776654 9999999999998875
Q ss_pred ---CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 289 ---DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 289 ---~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
.+++.++||||++.+ .+|......
T Consensus 143 ~~~~~~~lViDEah~~~~-~~~~~~l~~ 169 (206)
T 1vec_A 143 KVDHVQMIVLDEADKLLS-QDFVQIMED 169 (206)
T ss_dssp CCTTCCEEEEETHHHHTS-TTTHHHHHH
T ss_pred CcccCCEEEEEChHHhHh-hCcHHHHHH
Confidence 567889999999999 788765443
No 16
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=4.8e-29 Score=217.34 Aligned_cols=166 Identities=15% Similarity=0.183 Sum_probs=138.9
Q ss_pred cCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHH
Q psy10677 127 GQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYIL 206 (317)
Q Consensus 127 g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~l 206 (317)
|...+....+|++++|++.++++|++.||..| +++|.++++.++ +|+|++ ++||||||||++|++
T Consensus 6 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----i~~~TGsGKT~~~~~ 70 (220)
T 1t6n_A 6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHP---------SEVQHECIPQAI--LGMDVL----CQAKSGMGKTAVFVL 70 (220)
T ss_dssp --------CCSTTSCCCHHHHHHHHHTTCCCC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHH
T ss_pred CCcccccCCCHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCCchhhhhhH
Confidence 44444455679999999999999999999999 999999999999 999999 999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHcc----CcEEECcHHH
Q psy10677 207 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLR----ILTSATNTSL 281 (317)
Q Consensus 207 p~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l 281 (317)
|++..+... ..++++||++||++|+.|+++.++++.+.. ++++..++||.+...+...+. +|+|+||+++
T Consensus 71 ~~~~~~~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l 145 (220)
T 1t6n_A 71 ATLQQLEPV-----TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRI 145 (220)
T ss_dssp HHHHHCCCC-----TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHH
T ss_pred HHHHhhhcc-----CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHH
Confidence 999987542 246799999999999999999999998876 799999999999877766553 4999999999
Q ss_pred HHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHH
Q psy10677 282 GIYLQQN-----DAHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 282 ~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
.+++..+ .+++.++||||++++..+|.....
T Consensus 146 ~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 181 (220)
T 1t6n_A 146 LALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQ 181 (220)
T ss_dssp HHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHH
T ss_pred HHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHH
Confidence 9998875 456788999999987456655443
No 17
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.95 E-value=3e-28 Score=209.94 Aligned_cols=158 Identities=23% Similarity=0.310 Sum_probs=138.5
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+|+++++++.++++|++.||..| +++|.++++.++ +|+|++ ++||||||||++|++|+++++...
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~---------~~~Q~~~i~~~~--~~~~~l----i~~~TGsGKT~~~~~~~~~~l~~~ 66 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTP---------TPIQAAALPLAL--EGKDLI----GQARTGTGKTLAFALPIAERLAPS 66 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHHHHHHHCCCC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHc--CCCCEE----EECCCCChHHHHHHHHHHHHHhhc
Confidence 69999999999999999999999 999999999999 999999 999999999999999999998653
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc---CcEEECcHHHHHHHhcC----
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR---ILTSATNTSLGIYLQQN---- 288 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~---~ilv~TP~~l~~~l~~~---- 288 (317)
. ....++++||++||++|+.|+++.++++... +++..++||.+...+...+. .|+|+||+++.+++..+
T Consensus 67 ~--~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~ 142 (207)
T 2gxq_A 67 Q--ERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDL 142 (207)
T ss_dssp C--CTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCC
T ss_pred c--ccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcch
Confidence 2 1245789999999999999999999999875 78889999998766655443 49999999999998874
Q ss_pred -CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 289 -DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 289 -~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
.+++.++||||++++ .+|.+....
T Consensus 143 ~~~~~iViDEah~~~~-~~~~~~~~~ 167 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLS-MGFEEEVEA 167 (207)
T ss_dssp TTCSEEEEESHHHHHH-TTCHHHHHH
T ss_pred hhceEEEEEChhHhhc-cchHHHHHH
Confidence 567889999999999 888776544
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.95 E-value=1e-27 Score=227.15 Aligned_cols=167 Identities=17% Similarity=0.156 Sum_probs=147.3
Q ss_pred cCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHH
Q psy10677 127 GQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYIL 206 (317)
Q Consensus 127 g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~l 206 (317)
....+.+..+|++++|++.++++|++.||..| +|+|.+++|.++ +|+|++ ++||||||||++|++
T Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~ai~~i~--~~~~~l----v~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 29 TSEEVDVTPTFDTMGLREDLLRGIYAYGFEKP---------SAIQQRAIKQII--KGRDVI----AQSQSGTGKTATFSI 93 (410)
T ss_dssp CCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSHHHHHHH
T ss_pred CCCCccCCCCHhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCCCchHHHHH
Confidence 33445667899999999999999999999999 999999999999 999999 999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc---CcEEECcHHHHH
Q psy10677 207 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR---ILTSATNTSLGI 283 (317)
Q Consensus 207 p~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~---~ilv~TP~~l~~ 283 (317)
|+++.+... ..++++||++||++||.|+++.++++....++++..++||.+...+...+. .|+|+||++|.+
T Consensus 94 ~~~~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~ 168 (410)
T 2j0s_A 94 SVLQCLDIQ-----VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFD 168 (410)
T ss_dssp HHHHTCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHH
T ss_pred HHHHHHhhc-----cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHH
Confidence 999887532 346899999999999999999999999999999999999999888776654 499999999999
Q ss_pred HHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 284 YLQQN-----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 284 ~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
++..+ .+++.++||||++++ .+|.+.....
T Consensus 169 ~l~~~~~~~~~~~~vViDEah~~~~-~~~~~~~~~i 203 (410)
T 2j0s_A 169 MIRRRSLRTRAIKMLVLDEADEMLN-KGFKEQIYDV 203 (410)
T ss_dssp HHHTTSSCCTTCCEEEEETHHHHTS-TTTHHHHHHH
T ss_pred HHHhCCccHhheeEEEEccHHHHHh-hhhHHHHHHH
Confidence 99875 466789999999999 8887665443
No 19
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.93 E-value=7.4e-27 Score=226.37 Aligned_cols=170 Identities=15% Similarity=0.198 Sum_probs=141.5
Q ss_pred ceeecCCCCCC---cccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC--cCcccccceeccCC
Q psy10677 123 ITLIGQNIPKP---VKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA--KKFISVLQKKAEVQ 197 (317)
Q Consensus 123 i~~~g~~~~~~---~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~tG 197 (317)
+.+.+.+.+.| +.+|++++|++.++++|+++||..| +|+|.++||.++ .| +|++ ++||||
T Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p---------~~~Q~~ai~~il--~~~~~~~l----~~a~TG 141 (479)
T 3fmp_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRP---------SKIQENALPLML--AEPPQNLI----AQSQSG 141 (479)
T ss_dssp EEEECSSTTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHT--SBSCCEEE----EECCSS
T ss_pred ceecCCCCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHH--cCCCCcEE----EEcCCC
Confidence 34455555544 5789999999999999999999999 999999999999 66 9999 999999
Q ss_pred ChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccCcEEE
Q psy10677 198 SRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRILTSA 276 (317)
Q Consensus 198 sGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~ilv~ 276 (317)
||||++|++|+++++... ..++++|||+||++||.|+++.++.+.+.. ++.+...+|+.........-..|+||
T Consensus 142 sGKT~~~~l~il~~l~~~-----~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~ 216 (479)
T 3fmp_B 142 TGKTAAFVLAMLSQVEPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIG 216 (479)
T ss_dssp SSHHHHHHHHHHTTCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEE
T ss_pred CchhHHHHHHHHHHHhhc-----CCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEE
Confidence 999999999999887543 346799999999999999999999998864 68888888887654433333349999
Q ss_pred CcHHHHHHHhc------CCCCCCCCchhHHHhhhcCCcHHHH
Q psy10677 277 TNTSLGIYLQQ------NDAHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 277 TP~~l~~~l~~------~~~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
|||+|.+++.. ..+.+.++||+|++++..||.....
T Consensus 217 Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~ 258 (479)
T 3fmp_B 217 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258 (479)
T ss_dssp CHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHH
T ss_pred CchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHH
Confidence 99999999865 3577889999999998567665544
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.93 E-value=4.4e-26 Score=215.69 Aligned_cols=168 Identities=22% Similarity=0.197 Sum_probs=149.6
Q ss_pred ecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHH
Q psy10677 126 IGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 126 ~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
...+++....+|+++++++.+++.|++.||..| +++|.++|+.++ +|+|++ ++||||||||++|+
T Consensus 31 ~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~---------~~~Q~~~i~~~~--~~~~~l----v~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 31 IESNWNEIVDSFDDMNLSESLLRGIYAYGFEKP---------SAIQQRAILPCI--KGYDVI----AQAQSGTGKTATFA 95 (414)
T ss_dssp CCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE----ECCCSCSSSHHHHH
T ss_pred cCCCccchhcCHhhCCCCHHHHHHHHHcCCCCC---------CHHHHHHhHHHh--CCCCEE----EECCCCCcccHHHH
Confidence 455667788999999999999999999999999 999999999999 999999 99999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc----CcEEECcHHH
Q psy10677 206 LPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR----ILTSATNTSL 281 (317)
Q Consensus 206 lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l 281 (317)
+|+++.+... ..+.++||++||++||.|+++.++++....++.+..++||.+...+...+. .|+|+||++|
T Consensus 96 ~~~~~~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l 170 (414)
T 3eiq_A 96 ISILQQIELD-----LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRV 170 (414)
T ss_dssp HHHHHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHH
T ss_pred HHHHHHHhhc-----CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHH
Confidence 9999987643 246799999999999999999999999989999999999999888877665 3999999999
Q ss_pred HHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHHhh
Q psy10677 282 GIYLQQN-----DAHSPCLSVWRRLQDILGLTEETCVN 314 (317)
Q Consensus 282 ~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~~~ 314 (317)
.+++..+ .+++.++||||++.+ .+|.......
T Consensus 171 ~~~l~~~~~~~~~~~~vViDEah~~~~-~~~~~~~~~~ 207 (414)
T 3eiq_A 171 FDMLNRRYLSPKYIKMFVLDEADEMLS-RGFKDQIYDI 207 (414)
T ss_dssp HHHHHHTSSCSTTCCEEEECSHHHHHH-TTTHHHHHHH
T ss_pred HHHHHcCCcccccCcEEEEECHHHhhc-cCcHHHHHHH
Confidence 9998875 367889999999998 8887665543
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.93 E-value=5.9e-26 Score=213.28 Aligned_cols=163 Identities=23% Similarity=0.214 Sum_probs=144.7
Q ss_pred CCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHH
Q psy10677 130 IPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPAL 209 (317)
Q Consensus 130 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l 209 (317)
...+..+|++++|++.++++|.+.||..| +|+|.++++.++ .|+|++ ++||||||||++|++|++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~i~--~~~~~l----v~~~TGsGKT~~~~~~~~ 80 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEP---------SAIQQRAIMPII--EGHDVL----AQAQSGTGKTGTFSIAAL 80 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--HTCCEE----ECCCSSHHHHHHHHHHHH
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--CCCCEE----EECCCCChHHHHHHHHHH
Confidence 45667899999999999999999999999 999999999999 999999 999999999999999999
Q ss_pred HHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc--CcEEECcHHHHHHHhc
Q psy10677 210 YHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR--ILTSATNTSLGIYLQQ 287 (317)
Q Consensus 210 ~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~--~ilv~TP~~l~~~l~~ 287 (317)
..+... ..++++||++||++|+.|+++.+.++....++++..++||.+..++...+. .|+|+||++|.+.+..
T Consensus 81 ~~l~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~ 155 (394)
T 1fuu_A 81 QRIDTS-----VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR 155 (394)
T ss_dssp HHCCTT-----CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT
T ss_pred HHhhcc-----CCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh
Confidence 987643 347899999999999999999999999988999999999999877666543 4999999999999886
Q ss_pred C-----CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 288 N-----DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 288 ~-----~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
+ .+++.++||||.+.+ .+|.+....
T Consensus 156 ~~~~~~~~~~vIiDEah~~~~-~~~~~~~~~ 185 (394)
T 1fuu_A 156 RRFRTDKIKMFILDEADEMLS-SGFKEQIYQ 185 (394)
T ss_dssp TSSCCTTCCEEEEETHHHHHH-TTCHHHHHH
T ss_pred CCcchhhCcEEEEEChHHhhC-CCcHHHHHH
Confidence 4 567889999999998 787765443
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.93 E-value=6.3e-26 Score=225.12 Aligned_cols=157 Identities=19% Similarity=0.217 Sum_probs=136.3
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCC
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEG 221 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~ 221 (317)
|++.++++|++.||..| +|+|.++||.++...|+|++ ++||||||||+||++|+++++...+. ...
T Consensus 28 l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~il~~~~~dvl----v~apTGsGKTl~~~lpil~~l~~~~~-~~~ 93 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGL---------TPVQQKTIKPILSSEDHDVI----ARAKTGTGKTFAFLIPIFQHLINTKF-DSQ 93 (579)
T ss_dssp SCHHHHHHHHTTTCSSC---------CHHHHHHHHHHHCSSSEEEE----EECCTTSCHHHHHHHHHHHHHHHTTT-SST
T ss_pred CCHHHHHHHHHCCCCCC---------CHHHHHHHHHHHccCCCeEE----EEcCCCcHHHHHHHHHHHHHHHhccc-ccc
Confidence 99999999999999999 99999999999854478999 99999999999999999999987542 234
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcC----CCcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHHHHhc------
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISIFSRT----MRIRHACLYGGTSKMYQVILLR----ILTSATNTSLGIYLQQ------ 287 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~l~~~----~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~~l~~------ 287 (317)
.++++|||+||++||.|+++.++++... ..+.+..++||.+...+...+. .|+||||++|.+++..
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 5789999999999999999999998742 3578899999999888776653 3999999999988765
Q ss_pred CCCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 288 NDAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 288 ~~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
..+.++++||||+|++ +||.++...
T Consensus 174 ~~~~~lViDEah~l~~-~gf~~~~~~ 198 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLE-IGFRDDLET 198 (579)
T ss_dssp TTCCEEEEETHHHHTS-TTTHHHHHH
T ss_pred ccCCEEEEEChHHhhc-CCCHHHHHH
Confidence 4688889999999999 999887654
No 23
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.92 E-value=5.7e-26 Score=214.62 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=138.2
Q ss_pred CCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC--cCcccccceeccCCChhHHHHHHHH
Q psy10677 131 PKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA--KKFISVLQKKAEVQSRSVFTYILPA 208 (317)
Q Consensus 131 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~tGsGKTla~~lp~ 208 (317)
..++.+|+++++++.++++|++.||..| +|+|.+++|.++ +| +|++ ++||||||||++|++|+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~~~l----v~apTGsGKT~~~~~~~ 85 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRP---------SKIQENALPLML--AEPPQNLI----AQSQSGTGKTAAFVLAM 85 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--SSSCCCEE----EECCTTSCHHHHHHHHH
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--cCCCCeEE----EECCCCchHHHHHHHHH
Confidence 3457899999999999999999999999 999999999999 76 9999 99999999999999999
Q ss_pred HHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc
Q psy10677 209 LYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ 287 (317)
Q Consensus 209 l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~ 287 (317)
++++... ..++++||++||++||.|+++.++++.... ++++....|+.........-..|+|+||++|.+++..
T Consensus 86 ~~~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~ 160 (412)
T 3fht_A 86 LSQVEPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSK 160 (412)
T ss_dssp HHHCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTT
T ss_pred HHHhhhc-----CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHh
Confidence 9988653 346799999999999999999999998864 6888888888776544433345999999999999866
Q ss_pred ------CCCCCCCCchhHHHhhhcCCcHHH
Q psy10677 288 ------NDAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 288 ------~~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
..+++.++||+|.+++..+|....
T Consensus 161 ~~~~~~~~~~~iViDEah~~~~~~~~~~~~ 190 (412)
T 3fht_A 161 LKFIDPKKIKVFVLDEADVMIATQGHQDQS 190 (412)
T ss_dssp SCSSCGGGCCEEEEETHHHHHSTTTTHHHH
T ss_pred cCCcChhhCcEEEEeCHHHHhhcCCcHHHH
Confidence 357788999999999856665544
No 24
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.92 E-value=6.9e-26 Score=223.70 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=138.2
Q ss_pred cccccCCC-CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 134 VKTLDETN-IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 134 ~~~f~~~~-l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+.+|.+.+ |++.++++|.+.||..| +|+|.++||.++...|+|++ ++||||||||+||++|+++++
T Consensus 70 ~~~l~~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~l~~~~~~~l----v~apTGsGKTl~~~lpil~~l 136 (563)
T 3i5x_A 70 LDSLLEEGVLDKEIHKAITRMEFPGL---------TPVQQKTIKPILSSEDHDVI----ARAKTGTGKTFAFLIPIFQHL 136 (563)
T ss_dssp HHHHHHTTSSCHHHHHHHHTTCCSSC---------CHHHHHHHHHHHSSSSEEEE----EECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHhcCCCCeEE----EECCCCCCccHHHHHHHHHHH
Confidence 33443333 99999999999999999 99999999999843468999 999999999999999999999
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcC----CCcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHHH
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT----MRIRHACLYGGTSKMYQVILLR----ILTSATNTSLGIY 284 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~----~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~~ 284 (317)
...+. ....++++|||+||++||.|+++.++++... ..+.+..++||.+...+...+. .|+||||++|.++
T Consensus 137 ~~~~~-~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~ 215 (563)
T 3i5x_A 137 INTKF-DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDV 215 (563)
T ss_dssp HHTTT-SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHH
T ss_pred Hhccc-cccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHH
Confidence 87542 2234689999999999999999999998653 2577899999999887776553 3999999999988
Q ss_pred Hhc------CCCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 285 LQQ------NDAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 285 l~~------~~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
+.. ..+++.++||||+|++ .||.++...
T Consensus 216 l~~~~~~~~~~~~~lViDEah~l~~-~~f~~~~~~ 249 (563)
T 3i5x_A 216 LEKYSNKFFRFVDYKVLDEADRLLE-IGFRDDLET 249 (563)
T ss_dssp HHHHHHHHCTTCCEEEEETHHHHTS-TTTHHHHHH
T ss_pred HHhccccccccceEEEEeCHHHHhc-cchHHHHHH
Confidence 765 4688899999999999 999887654
No 25
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.92 E-value=1.2e-25 Score=212.18 Aligned_cols=157 Identities=14% Similarity=0.174 Sum_probs=137.9
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
...+|++++|++.++++|.+.||..| +|+|.++++.++ +|+|++ ++||||||||++|++|++.++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~i~--~~~~~l----i~a~TGsGKT~~~~~~~~~~~ 83 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKP---------SPIQEEAIPVAI--TGRDIL----ARAKNGTGKTAAFVIPTLEKV 83 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--HTCCEE----EECCTTSCHHHHHHHHHHHHC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--cCCCEE----EECCCCcHHHHHHHHHHHHHH
Confidence 44689999999999999999999999 999999999999 999999 999999999999999999987
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC---cEEECcHHHHHHHhcC-
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI---LTSATNTSLGIYLQQN- 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~---ilv~TP~~l~~~l~~~- 288 (317)
... ..++++||++||++|+.|+++.++++....++++..++||.....+...+.. |+|+||++|.+++..+
T Consensus 84 ~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~ 158 (400)
T 1s2m_A 84 KPK-----LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV 158 (400)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC
T ss_pred hhc-----cCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC
Confidence 542 2467999999999999999999999999889999999999998877665543 8999999999988875
Q ss_pred ----CCCCCCCchhHHHhhhcCCcHH
Q psy10677 289 ----DAHSPCLSVWRRLQDILGLTEE 310 (317)
Q Consensus 289 ----~~~~~~lde~d~l~~~~gf~~~ 310 (317)
.+++.++||||++.+ .+|...
T Consensus 159 ~~~~~~~~vIiDEaH~~~~-~~~~~~ 183 (400)
T 1s2m_A 159 ADLSDCSLFIMDEADKMLS-RDFKTI 183 (400)
T ss_dssp SCCTTCCEEEEESHHHHSS-HHHHHH
T ss_pred cccccCCEEEEeCchHhhh-hchHHH
Confidence 467888999999887 455443
No 26
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.92 E-value=2e-25 Score=209.57 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=136.9
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+|++++|++.++++|++.||..| +|+|.++++.++ .|+|++ +.||||||||++|++|++..+..
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~l----v~a~TGsGKT~~~~~~~~~~l~~ 72 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHP---------SEVQHECIPQAI--LGMDVL----CQAKSGMGKTAVFVLATLQQLEP 72 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSC---------CHHHHHHHHHHT--TTCCEE----EECSSCSSHHHHHHHHHHHHCCC
T ss_pred CChhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHh--cCCcEE----EECCCCCcHHHHHHHHHHHhhcc
Confidence 579999999999999999999999 999999999999 999999 99999999999999999988754
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC-CcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHHHHhcC-
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQVILLR----ILTSATNTSLGIYLQQN- 288 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~~l~~~- 288 (317)
. ..++++||++||++|+.|+++.++++.... ++++..++||.+...+...+. .|+|+||+++.+++..+
T Consensus 73 ~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~ 147 (391)
T 1xti_A 73 V-----TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS 147 (391)
T ss_dssp C-----TTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS
T ss_pred c-----CCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC
Confidence 3 346799999999999999999999998876 899999999999877766553 49999999999988775
Q ss_pred ----CCCCCCCchhHHHhhhcCCcHHH
Q psy10677 289 ----DAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 289 ----~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
.+++.++||||.+.+..+|....
T Consensus 148 ~~~~~~~~vViDEaH~~~~~~~~~~~~ 174 (391)
T 1xti_A 148 LNLKHIKHFILDECDKMLEQLDMRRDV 174 (391)
T ss_dssp SCCTTCSEEEECSHHHHTSSHHHHHHH
T ss_pred ccccccCEEEEeCHHHHhhccchHHHH
Confidence 45678899999998744554433
No 27
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.91 E-value=8e-25 Score=203.24 Aligned_cols=158 Identities=20% Similarity=0.281 Sum_probs=140.0
Q ss_pred cccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC-cCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 134 VKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA-KKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
..+|++++|++.++++|++.||..| +|+|.++++.++ +| ++++ +.||||||||++|++|++..+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~---------~~~Q~~~i~~~~--~~~~~~l----~~~~TGsGKT~~~~~~~~~~~ 69 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKP---------TDIQMKVIPLFL--NDEYNIV----AQARTGSGKTASFAIPLIELV 69 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSC---------CHHHHHHHHHHH--HTCSEEE----EECCSSSSHHHHHHHHHHHHS
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--CCCCCEE----EECCCCChHHHHHHHHHHHHh
Confidence 4689999999999999999999999 999999999999 77 7999 999999999999999999877
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHHHhcC--
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIYLQQN-- 288 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~l~~~-- 288 (317)
.. ..++++||++||++|+.|+++.++++....++++..++||.+...+...+.. |+|+||+++.+++..+
T Consensus 70 ~~------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~ 143 (367)
T 1hv8_A 70 NE------NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTL 143 (367)
T ss_dssp CS------SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCS
T ss_pred cc------cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCc
Confidence 54 2478999999999999999999999998888999999999998777665544 9999999999998875
Q ss_pred ---CCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 289 ---DAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 289 ---~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
.+++.++||||.+.+ .+|......
T Consensus 144 ~~~~~~~iIiDEah~~~~-~~~~~~~~~ 170 (367)
T 1hv8_A 144 NLKNVKYFILDEADEMLN-MGFIKDVEK 170 (367)
T ss_dssp CTTSCCEEEEETHHHHHT-TTTHHHHHH
T ss_pred ccccCCEEEEeCchHhhh-hchHHHHHH
Confidence 456788999999998 787665443
No 28
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.91 E-value=5.1e-25 Score=206.52 Aligned_cols=157 Identities=16% Similarity=0.216 Sum_probs=134.6
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC--cCcccccceeccCCChhHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA--KKFISVLQKKAEVQSRSVFTYILPALY 210 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g--~dvi~~~~~~a~tGsGKTla~~lp~l~ 210 (317)
...+|++++|++.++++|.+.||..| +|+|.++++.++ .| +|++ ++||||||||++|++|++.
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~---------~~~Q~~~i~~~~--~~~~~~~l----v~a~TGsGKT~~~~~~~~~ 67 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKP---------SKIQERALPLLL--HNPPRNMI----AQSQSGTGKTAAFSLTMLT 67 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--CSSCCCEE----EECCTTSCHHHHHHHHHHH
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHH--cCCCCeEE----EECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999999999 999999999999 77 9999 9999999999999999999
Q ss_pred HHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC--
Q psy10677 211 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-- 288 (317)
Q Consensus 211 ~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-- 288 (317)
++... ..++++||++||++|+.|+++.++++....++.+...+|+....... .-..|+|+||+++.+++..+
T Consensus 68 ~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~~~~ 141 (395)
T 3pey_A 68 RVNPE-----DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQ-INAQVIVGTPGTVLDLMRRKLM 141 (395)
T ss_dssp HCCTT-----CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSC-BCCSEEEECHHHHHHHHHTTCB
T ss_pred HhccC-----CCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhcc-CCCCEEEEcHHHHHHHHHcCCc
Confidence 87643 35789999999999999999999999998889988888876543221 12349999999999998765
Q ss_pred ---CCCCCCCchhHHHhhhcCCcHH
Q psy10677 289 ---DAHSPCLSVWRRLQDILGLTEE 310 (317)
Q Consensus 289 ---~~~~~~lde~d~l~~~~gf~~~ 310 (317)
.+++.++||||.+.+..+|...
T Consensus 142 ~~~~~~~iIiDEah~~~~~~~~~~~ 166 (395)
T 3pey_A 142 QLQKIKIFVLDEADNMLDQQGLGDQ 166 (395)
T ss_dssp CCTTCCEEEEETHHHHHHSTTHHHH
T ss_pred ccccCCEEEEEChhhhcCccccHHH
Confidence 5678899999999985565443
No 29
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.91 E-value=3.4e-25 Score=223.14 Aligned_cols=169 Identities=15% Similarity=0.072 Sum_probs=131.5
Q ss_pred ccCCCCHHHHHHHHHHCCcee-ecCCCCCCcccccCCCCChhhh---ccc-CcCCCCCCCcCCCCCCCCchhhhhccccc
Q psy10677 105 HLQGKTKEEIDSFRKEHNITL-IGQNIPKPVKTLDETNIPSYIL---GPM-KPKTTNNENNHNKNKKCGDKESKNWTIPL 179 (317)
Q Consensus 105 ~i~~~~~~~i~~~~~~~~i~~-~g~~~~~~~~~f~~~~l~~~l~---~~l-~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l 179 (317)
.+..++++++.....+.+..+ .|. +++++ |++.+. ++. +..|| .| |++|..++|.++
T Consensus 35 ~~~~lsd~el~~~t~~~~~~~~~g~-------~ld~~-l~ea~a~vrea~~r~lG~-~p---------t~VQ~~~ip~ll 96 (844)
T 1tf5_A 35 DYENLSDDALKHKTIEFKERLEKGA-------TTDDL-LVEAFAVVREASRRVTGM-FP---------FKVQLMGGVALH 96 (844)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHTTC-------CHHHH-HHHHHHHHHHHHHHHHSC-CC---------CHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcCC-------ChHHH-HHHHHHHHHHHHHHHcCC-CC---------cHHHHHhhHHHh
Confidence 367788899977666655443 232 23332 222211 111 14799 89 999999999999
Q ss_pred cccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEEC
Q psy10677 180 NFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 259 (317)
Q Consensus 180 ~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~g 259 (317)
+|+ + +.|+||||||+||.+|++.+.. .++.++||+||||||.|+++++..+.+.+|+++.+++|
T Consensus 97 --~G~--I----aea~TGeGKTlaf~LP~~l~aL--------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~g 160 (844)
T 1tf5_A 97 --DGN--I----AEMKTGEGKTLTSTLPVYLNAL--------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLN 160 (844)
T ss_dssp --TTS--E----EECCTTSCHHHHHHHHHHHHHT--------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCT
T ss_pred --CCC--E----EEccCCcHHHHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeC
Confidence 999 8 9999999999999999986543 25789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHc-cCcEEECcHHH-HHHHhc-----------CCCCCCCCchhHHHh-hhcCCc
Q psy10677 260 GTSKMYQVILL-RILTSATNTSL-GIYLQQ-----------NDAHSPCLSVWRRLQ-DILGLT 308 (317)
Q Consensus 260 g~~~~~~~~~~-~~ilv~TP~~l-~~~l~~-----------~~~~~~~lde~d~l~-~~~gf~ 308 (317)
|.+...+.... .+|+||||||| .|+|.. ..+++.+|||||+|| | +++.
T Consensus 161 g~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiD-ea~t 222 (844)
T 1tf5_A 161 SMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILID-EART 222 (844)
T ss_dssp TSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTT-TTTC
T ss_pred CCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhh-cccc
Confidence 99987665544 34999999999 566543 356789999999999 7 7654
No 30
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.90 E-value=1.8e-23 Score=192.02 Aligned_cols=145 Identities=23% Similarity=0.281 Sum_probs=129.8
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCC
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEG 221 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~ 221 (317)
|++.+.++|++.||..| +|+|.++++.++ +|++++ +.||||||||++|++|+++.
T Consensus 1 l~~~i~~~l~~~g~~~l---------~~~Q~~~i~~i~--~~~~~l----v~~~TGsGKT~~~~~~~~~~---------- 55 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNF---------TEVQSKTIPLML--QGKNVV----VRAKTGSGKTAAYAIPILEL---------- 55 (337)
T ss_dssp CCHHHHHHHHHTTCCSC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSHHHHHHHHHHHH----------
T ss_pred CCHHHHHHHHHcCCCCC---------CHHHHHHHHHHh--cCCCEE----EEcCCCCcHHHHHHHHHHhh----------
Confidence 57899999999999999 999999999999 999999 99999999999999999863
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC--cEEECcHHHHHHHhcC-----CCCCCC
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI--LTSATNTSLGIYLQQN-----DAHSPC 294 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~--ilv~TP~~l~~~l~~~-----~~~~~~ 294 (317)
+.++||++||++|+.|+++.++++....++++..++||.+...+...+.. |+|+||++|.+++..+ .+++.+
T Consensus 56 -~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iV 134 (337)
T 2z0m_A 56 -GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVI 134 (337)
T ss_dssp -TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEE
T ss_pred -cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEE
Confidence 46899999999999999999999999889999999999998877766654 9999999999998865 456788
Q ss_pred CchhHHHhhhcCCcHHHHh
Q psy10677 295 LSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 295 lde~d~l~~~~gf~~~~~~ 313 (317)
+||||.+.+ .+|......
T Consensus 135 iDEah~~~~-~~~~~~~~~ 152 (337)
T 2z0m_A 135 IDEADLMFE-MGFIDDIKI 152 (337)
T ss_dssp EESHHHHHH-TTCHHHHHH
T ss_pred EEChHHhhc-cccHHHHHH
Confidence 999999998 888665443
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.88 E-value=2.8e-23 Score=197.39 Aligned_cols=140 Identities=14% Similarity=0.066 Sum_probs=118.5
Q ss_pred hhcccCcC-CCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCc
Q psy10677 146 ILGPMKPK-TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGP 224 (317)
Q Consensus 146 l~~~l~~~-g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~ 224 (317)
+.+.+++. || .| +|+|.+++|.++ +|+|++ ++||||||||++|++|++..+. .++
T Consensus 10 ~~~~l~~~~~~-~~---------~~~Q~~~i~~i~--~~~~~l----v~apTGsGKT~~~l~~~~~~~~--------~~~ 65 (414)
T 3oiy_A 10 FRSFFKKKFGK-DL---------TGYQRLWAKRIV--QGKSFT----MVAPTGVGKTTFGMMTALWLAR--------KGK 65 (414)
T ss_dssp HHHHHHHHHSS-CC---------CHHHHHHHHHHT--TTCCEE----CCSCSSSSHHHHHHHHHHHHHT--------TTC
T ss_pred HHHHHHHhcCC-CC---------CHHHHHHHHHHh--cCCCEE----EEeCCCCCHHHHHHHHHHHHhc--------CCC
Confidence 34445543 55 68 999999999999 999999 9999999999999999988762 368
Q ss_pred eEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCH---HHHHHHc----cCcEEECcHHHHHHHh---cCCCCCCC
Q psy10677 225 IALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK---MYQVILL----RILTSATNTSLGIYLQ---QNDAHSPC 294 (317)
Q Consensus 225 ~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~---~~~~~~~----~~ilv~TP~~l~~~l~---~~~~~~~~ 294 (317)
++||++||++||.|+++.+++++. .++++..++||.+. ..+...+ ..|+|+||++|.+++. ...+++.+
T Consensus 66 ~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iV 144 (414)
T 3oiy_A 66 KSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVF 144 (414)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEE
Confidence 999999999999999999999988 89999999999998 4444444 3499999999976544 46889999
Q ss_pred Cchh----------HHHhhhcCCcHH
Q psy10677 295 LSVW----------RRLQDILGLTEE 310 (317)
Q Consensus 295 lde~----------d~l~~~~gf~~~ 310 (317)
+||| |+|++.+||.++
T Consensus 145 iDEaH~~~~~~~~~d~~l~~~~~~~~ 170 (414)
T 3oiy_A 145 VDDVDAVLKASRNIDTLLMMVGIPEE 170 (414)
T ss_dssp ESCHHHHHHCHHHHHHHHHHTTCCHH
T ss_pred EeChHhhhhccchhhhHHhhcCCcHH
Confidence 9999 777777899887
No 32
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.88 E-value=2.9e-23 Score=208.83 Aligned_cols=125 Identities=17% Similarity=0.025 Sum_probs=108.1
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|..++|.++ +|+ + +.++||||||+||++|++.+.. .+++++||+||||||.|+++++..+.
T Consensus 76 ~~VQ~~~i~~ll--~G~--I----aem~TGsGKTlaf~LP~l~~~l--------~g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 76 FDVQLLGGMVLN--ERC--I----AEMRTGEGKTLTATLPAYLNAL--------TGKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp CHHHHHHHHHHH--SSE--E----EECCTTSCHHHHHHHHHHHHHT--------TSSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred ChHHHhhccccc--CCe--e----eeecCCchHHHHHHHHHHHHHH--------cCCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 999999999999 998 8 8999999999999999997653 25789999999999999999999999
Q ss_pred cCCCcEEEEEECCCCHHHHHHHc-cCcEEECcHHH-HHHHhcC-----------CCCCCCCchhHHHhhhcCCc
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILL-RILTSATNTSL-GIYLQQN-----------DAHSPCLSVWRRLQDILGLT 308 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~-~~ilv~TP~~l-~~~l~~~-----------~~~~~~lde~d~l~~~~gf~ 308 (317)
+.+++++++++||.+...+.... .+|+||||||| .|+|..+ .+.+.+|||||+||.-.|+.
T Consensus 140 ~~lgl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~t 213 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEART 213 (853)
T ss_dssp HHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTC
T ss_pred HhcCCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcc
Confidence 99999999999999976554433 34999999999 6887643 56788999999999326653
No 33
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.86 E-value=2.2e-22 Score=202.82 Aligned_cols=164 Identities=15% Similarity=0.142 Sum_probs=127.0
Q ss_pred cCCCCHHHH----HHHHHHCCceeecCCCCCCcccccCCCCChhh---hcccC-cCCCCCCCcCCCCCCCCchhhhhccc
Q psy10677 106 LQGKTKEEI----DSFRKEHNITLIGQNIPKPVKTLDETNIPSYI---LGPMK-PKTTNNENNHNKNKKCGDKESKNWTI 177 (317)
Q Consensus 106 i~~~~~~~i----~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l---~~~l~-~~g~~~p~~~~~~~~~t~iQ~~~ip~ 177 (317)
+..++++++ ..|+......+.|. +++++ ||+.+ .++.+ ..|+ +| |++|..++|.
T Consensus 61 ~~~Lsd~eL~~kt~efk~rl~~~~~ge-------~ld~~-lpeafA~vrEa~~R~lG~-rP---------~~VQ~~~ip~ 122 (922)
T 1nkt_A 61 VEKLTDAELRAKTDEFKRRLADQKNPE-------TLDDL-LPEAFAVAREAAWRVLDQ-RP---------FDVQVMGAAA 122 (922)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHCSSSCC-------CHHHH-HHHHHHHHHHHHHHHHSC-CC---------CHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhcccCC-------CHHHH-HHHHHHHHHHHHHHHcCC-CC---------CHHHHHHHHh
Confidence 456667766 56665543222232 34443 33332 12222 3688 89 9999999999
Q ss_pred cccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEE
Q psy10677 178 PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACL 257 (317)
Q Consensus 178 ~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~ 257 (317)
++ +|+ + +.++||+|||++|.+|++..... +.+++||+||++||.|+++++..+.+.+|+++.++
T Consensus 123 Ll--~G~--I----aem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i 186 (922)
T 1nkt_A 123 LH--LGN--V----AEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVI 186 (922)
T ss_dssp HH--TTE--E----EECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred Hh--cCC--E----EEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99 998 8 99999999999999999765542 46899999999999999999999999999999999
Q ss_pred ECCCCHHHHHHHc-cCcEEECcHHH-HHHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 258 YGGTSKMYQVILL-RILTSATNTSL-GIYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 258 ~gg~~~~~~~~~~-~~ilv~TP~~l-~~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
+||.+...+.... .+|++||||+| .|+|..+ .+++.+|||||+||.
T Consensus 187 ~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLi 245 (922)
T 1nkt_A 187 LATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILI 245 (922)
T ss_dssp CTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHT
T ss_pred eCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHH
Confidence 9999976655544 34999999999 6777654 577889999999993
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.86 E-value=2.6e-22 Score=196.15 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=107.5
Q ss_pred HHHHHHHHHHCCcee-ecCCCCCCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccC--cCcc
Q psy10677 111 KEEIDSFRKEHNITL-IGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA--KKFI 187 (317)
Q Consensus 111 ~~~i~~~~~~~~i~~-~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g--~dvi 187 (317)
.++.+.+....++.. .....|.+...|+..++++.+++.|.+.||..| +++|.+||+.++ +| ++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p---------~~~Q~~ai~~i~--~~~~~~~l 162 (508)
T 3fho_A 94 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XKIQEKALPLLL--SNPPRNMI 162 (508)
T ss_dssp ---------------------------------------------CEEC---------CCTTSSSHHHHH--CSSCCCEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCc---------HHHHHHHHHHHH--cCCCCCEE
Confidence 455566655555433 333345566778888999999999999999999 999999999999 77 9999
Q ss_pred cccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHH
Q psy10677 188 SVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267 (317)
Q Consensus 188 ~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~ 267 (317)
++||||||||++|++|++.++... ..++++||++||++|+.|+++.++++....++.+...+++.......
T Consensus 163 ----l~apTGsGKT~~~~~~il~~l~~~-----~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (508)
T 3fho_A 163 ----GQSQSGTGKTAAFALTMLSRVDAS-----VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAK 233 (508)
T ss_dssp ----EECCSSTTSHHHHHHHHHHHSCTT-----CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC----------C
T ss_pred ----EECCCCccHHHHHHHHHHHHHHhC-----CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccccc
Confidence 999999999999999999988653 34679999999999999999999999988888877777765543321
Q ss_pred HHccCcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHHHH
Q psy10677 268 ILLRILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 268 ~~~~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
.-..|+|+||++|.+++..+ .+++.++||+|.+.+..+|.....
T Consensus 234 -~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~ 282 (508)
T 3fho_A 234 -IDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSM 282 (508)
T ss_dssp -CCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHH
T ss_pred -CCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHH
Confidence 12349999999999988765 466788999999988566655443
No 35
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.85 E-value=1.1e-21 Score=197.42 Aligned_cols=130 Identities=15% Similarity=0.046 Sum_probs=112.4
Q ss_pred CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 153 KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 153 ~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
.|+ .| |++|..++|.++ +|+ + +.++||||||++|.+|++..... |.+++|++||
T Consensus 76 lG~-~P---------t~VQ~~~ip~Ll--qG~--I----aeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPT 129 (997)
T 2ipc_A 76 LGM-RH---------FDVQLIGGAVLH--EGK--I----AEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVN 129 (997)
T ss_dssp TCC-CC---------CHHHHHHHHHHH--TTS--E----EECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESS
T ss_pred hCC-CC---------cHHHHhhccccc--CCc--e----eeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCC
Confidence 688 89 999999999999 998 8 89999999999999999755442 4589999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc-CcEEECcHHH-HHHHhcC--------------CCCCCCCc
Q psy10677 233 RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR-ILTSATNTSL-GIYLQQN--------------DAHSPCLS 296 (317)
Q Consensus 233 reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~-~ilv~TP~~l-~~~l~~~--------------~~~~~~ld 296 (317)
++||.|+++++..+.+.+|+++.+++||.+...+..... +|+|||||+| .|+|..+ .+.+.++|
T Consensus 130 reLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIID 209 (997)
T 2ipc_A 130 DYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIID 209 (997)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEe
Confidence 999999999999999999999999999999766555443 3999999999 7888765 56778899
Q ss_pred hhHHHhhhcCCc
Q psy10677 297 VWRRLQDILGLT 308 (317)
Q Consensus 297 e~d~l~~~~gf~ 308 (317)
|+|+||.--+..
T Consensus 210 EaDsmLiDeart 221 (997)
T 2ipc_A 210 EVDSILIDEART 221 (997)
T ss_dssp THHHHTTSSTTS
T ss_pred chHHHHHhCCCC
Confidence 999998535544
No 36
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.85 E-value=1.5e-21 Score=205.74 Aligned_cols=128 Identities=14% Similarity=0.071 Sum_probs=113.7
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
||+|.+++|.++ .|+|++ ++||||||||++|++|++..+. .++++|||+||||||.|+++.+++++
T Consensus 80 t~iQ~~ai~~il--~g~dvl----v~ApTGSGKTl~~l~~il~~~~--------~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 80 TGYQRLWAKRIV--QGKSFT----MVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp CHHHHHHHHHHT--TTCCEE----ECCSTTCCHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHH--cCCCEE----EEeCCCCcHHHHHHHHHHHHHh--------cCCeEEEEechHHHHHHHHHHHHHhh
Confidence 999999999999 999999 9999999999999999888762 36899999999999999999999988
Q ss_pred cCCCcEEEEEECCCCH---HHHHHHcc----CcEEECcHHHHHHH---hcCCCCCCCCchh----------HHHhhhcCC
Q psy10677 248 RTMRIRHACLYGGTSK---MYQVILLR----ILTSATNTSLGIYL---QQNDAHSPCLSVW----------RRLQDILGL 307 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~---~~~~~~~~----~ilv~TP~~l~~~l---~~~~~~~~~lde~----------d~l~~~~gf 307 (317)
..+++++.++||.+. ..+...+. +|+|||||+|.+++ ..+.+++.++||| |+|++.+||
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf 224 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGI 224 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSC
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCC
Confidence 779999999999988 55555553 38999999997664 4578999999999 889998999
Q ss_pred cHH
Q psy10677 308 TEE 310 (317)
Q Consensus 308 ~~~ 310 (317)
.++
T Consensus 225 ~~~ 227 (1104)
T 4ddu_A 225 PEE 227 (1104)
T ss_dssp CHH
T ss_pred CHH
Confidence 988
No 37
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.84 E-value=1e-21 Score=192.61 Aligned_cols=148 Identities=13% Similarity=0.105 Sum_probs=126.9
Q ss_pred cccccCCCCChhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 134 VKTLDETNIPSYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+.+|++++|++.+.+.|++ .||..| +|+|.++|+.++ +|+|++ +++|||||||+||++|++..
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~---------r~~Q~~~i~~il--~g~d~l----v~apTGsGKTl~~~lp~l~~- 64 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQF---------RPGQEEIIDTVL--SGRDCL----VVMPTGGGKSLCYQIPALLL- 64 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSC---------CTTHHHHHHHHH--TTCCEE----EECSCHHHHHHHHHHHHHHS-
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCC---------CHHHHHHHHHHH--cCCCEE----EECCCCcHHHHHHHHHHHHh-
Confidence 4689999999999999998 799999 999999999999 999999 99999999999999999842
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc-------cCcEEECcHHHH---
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL-------RILTSATNTSLG--- 282 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~-------~~ilv~TP~~l~--- 282 (317)
...+||++|+++|+.|+.+.++.+ ++++..+.|+.+..+..... .+++++||++|.
T Consensus 65 ----------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~ 130 (523)
T 1oyw_A 65 ----------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDN 130 (523)
T ss_dssp ----------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTT
T ss_pred ----------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChH
Confidence 257999999999999999988874 78888999988876554322 238999999985
Q ss_pred --HHHhcCCCCCCCCchhHHHhhhcC--CcHHHH
Q psy10677 283 --IYLQQNDAHSPCLSVWRRLQDILG--LTEETC 312 (317)
Q Consensus 283 --~~l~~~~~~~~~lde~d~l~~~~g--f~~~~~ 312 (317)
+.+....+.+.++||||.+.+ .| |.++..
T Consensus 131 ~~~~l~~~~~~~vViDEaH~i~~-~g~~fr~~~~ 163 (523)
T 1oyw_A 131 FLEHLAHWNPVLLAVDEAHCISQ-WGHDFRPEYA 163 (523)
T ss_dssp HHHHHTTSCEEEEEESSGGGGCT-TSSCCCHHHH
T ss_pred HHHHHhhCCCCEEEEeCccccCc-CCCccHHHHH
Confidence 556668899999999999988 76 666543
No 38
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.84 E-value=1.6e-21 Score=197.92 Aligned_cols=154 Identities=12% Similarity=0.121 Sum_probs=131.2
Q ss_pred CcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccc-cccccCcCcccccceeccCCChhHHHHHHHHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTI-PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYH 211 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~-~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~ 211 (317)
...+|++++|++.+.+.+++.||..| +++|.++++. +. +|++++ ++||||||||++|.+|+++.
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l---------~~~Q~~~i~~~~~--~~~~~l----v~apTGsGKT~~~~l~il~~ 70 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKL---------NPPQTEAVKKGLL--EGNRLL----LTSPTGSGKTLIAEMGIISF 70 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBC---------CHHHHHHHHTTTT--TTCCEE----EECCTTSCHHHHHHHHHHHH
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCC---------CHHHHHHHHHHhc--CCCcEE----EEcCCCCcHHHHHHHHHHHH
Confidence 34689999999999999999999999 9999999999 77 899999 99999999999999999998
Q ss_pred HHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC---
Q psy10677 212 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN--- 288 (317)
Q Consensus 212 l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~--- 288 (317)
+... +.+++|++|+|+||.|+++.++.+.. .|+++..++|+....+....-..|+|+|||++..++..+
T Consensus 71 ~~~~-------~~~il~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~ 142 (715)
T 2va8_A 71 LLKN-------GGKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEW 142 (715)
T ss_dssp HHHS-------CSEEEEECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGG
T ss_pred HHHC-------CCeEEEEeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhH
Confidence 8742 57999999999999999999965544 489999999988765543333349999999999988875
Q ss_pred --CCCCCCCchhHHHhhhcCCcHH
Q psy10677 289 --DAHSPCLSVWRRLQDILGLTEE 310 (317)
Q Consensus 289 --~~~~~~lde~d~l~~~~gf~~~ 310 (317)
.+++.++||++.+.+ .++...
T Consensus 143 l~~~~~vIiDE~H~l~~-~~~~~~ 165 (715)
T 2va8_A 143 LNEVNYFVLDELHYLND-PERGPV 165 (715)
T ss_dssp GGGEEEEEECSGGGGGC-TTTHHH
T ss_pred hhccCEEEEechhhcCC-cccchH
Confidence 456889999999876 555443
No 39
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.84 E-value=4e-21 Score=190.83 Aligned_cols=146 Identities=13% Similarity=0.102 Sum_probs=123.8
Q ss_pred ccCCCCChhhhcccCc-CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 137 LDETNIPSYILGPMKP-KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 137 f~~~~l~~~l~~~l~~-~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
++++++++.+.+.|++ .||..| +|+|.++|+.++ +|+|++ +++|||+|||+||++|++..
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~---------rp~Q~~~i~~il--~g~d~l----v~~pTGsGKTl~~~lpal~~---- 83 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKF---------RPLQLETINVTM--AGKEVF----LVMPTGGGKSLCYQLPALCS---- 83 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSC---------CTTHHHHHHHHH--TTCCEE----EECCTTSCTTHHHHHHHHTS----
T ss_pred cccCCCCHHHHHHHHHHhCCCCC---------CHHHHHHHHHHH--cCCCEE----EEECCCChHHHHHHHHHHHc----
Confidence 4468899999999998 599999 999999999999 999999 99999999999999999741
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc---------cCcEEECcHHHH----
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL---------RILTSATNTSLG---- 282 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~---------~~ilv~TP~~l~---- 282 (317)
...+||++||++|+.|+.+.++++ ++++..++|+.+..++...+ ..|+|+||++|.
T Consensus 84 -------~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~ 152 (591)
T 2v1x_A 84 -------DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM 152 (591)
T ss_dssp -------SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHH
T ss_pred -------CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHH
Confidence 358999999999999999999887 78899999999887654322 228999999873
Q ss_pred --HHHh----cCCCCCCCCchhHHHhhhcC--CcHHHHh
Q psy10677 283 --IYLQ----QNDAHSPCLSVWRRLQDILG--LTEETCV 313 (317)
Q Consensus 283 --~~l~----~~~~~~~~lde~d~l~~~~g--f~~~~~~ 313 (317)
+.+. .+.+.+.++||||.+.+ .| |.++...
T Consensus 153 ~~~~l~~~~~~~~i~~iViDEAH~is~-~g~dfr~~~~~ 190 (591)
T 2v1x_A 153 FMSRLEKAYEARRFTRIAVDEVHCCSQ-WGHDFRPDYKA 190 (591)
T ss_dssp HHHHHHHHHHTTCEEEEEEETGGGGST-TCTTCCGGGGG
T ss_pred HHHHHHhhhhccCCcEEEEECcccccc-cccccHHHHHH
Confidence 3333 35889999999999998 88 8777543
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.83 E-value=1.2e-21 Score=198.95 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=129.7
Q ss_pred cccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccc-cccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTI-PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~-~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+|++++|++.+.+.+++.||..| +++|.++++. +. +|++++ ++||||||||++|.+|+++.+..
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l---------~~~Q~~~i~~~~~--~~~~~l----v~apTGsGKT~~~~l~il~~~~~ 66 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESF---------YPPQAEALKSGIL--EGKNAL----ISIPTASGKTLIAEIAMVHRILT 66 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBC---------CHHHHHHHTTTGG--GTCEEE----EECCGGGCHHHHHHHHHHHHHHH
T ss_pred cHhhcCCCHHHHHHHHHCCCCCC---------CHHHHHHHHHHhc--CCCcEE----EEcCCccHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999 9999999998 78 899999 99999999999999999998874
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----C
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----D 289 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~ 289 (317)
. +.+++|++|||+||.|+++.++++.. .|+++..++|+.+.......-..|+|+||+++..++..+ .
T Consensus 67 ~-------~~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~ 138 (720)
T 2zj8_A 67 Q-------GGKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKD 138 (720)
T ss_dssp H-------CSEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGG
T ss_pred C-------CCEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhc
Confidence 2 57999999999999999999976655 489999999988765443333349999999999888764 4
Q ss_pred CCCCCCchhHHHhhhcCCcHH
Q psy10677 290 AHSPCLSVWRRLQDILGLTEE 310 (317)
Q Consensus 290 ~~~~~lde~d~l~~~~gf~~~ 310 (317)
+++.++||++.+.+ .++...
T Consensus 139 ~~~vIiDE~H~l~~-~~r~~~ 158 (720)
T 2zj8_A 139 VKILVADEIHLIGS-RDRGAT 158 (720)
T ss_dssp EEEEEEETGGGGGC-TTTHHH
T ss_pred CCEEEEECCcccCC-CcccHH
Confidence 56889999999877 555443
No 41
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.83 E-value=4.2e-21 Score=193.89 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=113.5
Q ss_pred hcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceE
Q psy10677 147 LGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIA 226 (317)
Q Consensus 147 ~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~a 226 (317)
..+|...||..| +++|.++++.++ .|+|++ +++|||||||++|++|+++++...+. ..++++
T Consensus 3 ~~~l~~~g~~~l---------r~~Q~~~i~~~l--~g~~~i----v~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~ 64 (696)
T 2ykg_A 3 VSDTNLYSPFKP---------RNYQLELALPAM--KGKNTI----ICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKV 64 (696)
T ss_dssp ----CTTC--CC---------CHHHHHHHHHHH--TTCCEE----EECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCE
T ss_pred CCcccccCCCCc---------cHHHHHHHHHHH--cCCCEE----EEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeE
Confidence 456788899999 999999999999 999999 99999999999999999999876531 234789
Q ss_pred EEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc---cCcEEECcHHHHHHHhcCC------CCCCCCch
Q psy10677 227 LVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL---RILTSATNTSLGIYLQQND------AHSPCLSV 297 (317)
Q Consensus 227 lil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~---~~ilv~TP~~l~~~l~~~~------~~~~~lde 297 (317)
||++||++|+.|+.+.++++....++++..++||.+...+...+ .+|+|+|||+|.+++..+. +++.++||
T Consensus 65 lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDE 144 (696)
T 2ykg_A 65 VFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 144 (696)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEET
T ss_pred EEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeC
Confidence 99999999999999999999988899999999998654333322 3499999999999998764 36888999
Q ss_pred hHHH
Q psy10677 298 WRRL 301 (317)
Q Consensus 298 ~d~l 301 (317)
||++
T Consensus 145 aH~~ 148 (696)
T 2ykg_A 145 CHNT 148 (696)
T ss_dssp GGGC
T ss_pred CCcc
Confidence 9994
No 42
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.83 E-value=3.9e-21 Score=188.40 Aligned_cols=130 Identities=14% Similarity=0.033 Sum_probs=109.5
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
++|+|.++++.++ .|+|++ +++|||||||++|++|+++.+...+ ...++++||++||++|+.|+++.++++
T Consensus 8 ~~~~Q~~~i~~~~--~~~~~l----~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~ 78 (556)
T 4a2p_A 8 ARSYQIELAQPAI--NGKNAL----ICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 78 (556)
T ss_dssp CCHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCCCEE----EEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3999999999999 999999 9999999999999999999987653 233789999999999999999999999
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHc---cCcEEECcHHHHHHHhcCC------CCCCCCchhHHHhhhcC
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILL---RILTSATNTSLGIYLQQND------AHSPCLSVWRRLQDILG 306 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~---~~ilv~TP~~l~~~l~~~~------~~~~~lde~d~l~~~~g 306 (317)
....++++..++||.+...+...+ ..|+|+||++|.+++..+. +++.++||||++.+ .+
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~-~~ 146 (556)
T 4a2p_A 79 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG-NH 146 (556)
T ss_dssp HGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCST-TS
T ss_pred hcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCC-cc
Confidence 998899999999999766544333 3499999999999998764 46889999999987 44
No 43
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.83 E-value=4.9e-21 Score=187.33 Aligned_cols=128 Identities=16% Similarity=0.073 Sum_probs=112.5
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
++|+|.++++.++ .|+|++ +++|||||||++|++|+++.+...+ ...++++||++||++|+.|+++.++++
T Consensus 5 ~~~~Q~~~i~~~~--~~~~~l----~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 5 PRNYQLELALPAK--KGKNTI----ICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHh--CCCCEE----EEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 3999999999999 999999 9999999999999999999998653 234789999999999999999999999
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHc---cCcEEECcHHHHHHHhcCC------CCCCCCchhHHHhh
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILL---RILTSATNTSLGIYLQQND------AHSPCLSVWRRLQD 303 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~---~~ilv~TP~~l~~~l~~~~------~~~~~lde~d~l~~ 303 (317)
....++++..++||.+...+...+ ..|+|+||++|.+++..+. +++.++||||++.+
T Consensus 76 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~ 141 (555)
T 3tbk_A 76 FERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSK 141 (555)
T ss_dssp HHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCST
T ss_pred hccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCC
Confidence 998899999999999766543333 3499999999999998764 46889999999987
No 44
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.83 E-value=8.3e-22 Score=199.69 Aligned_cols=149 Identities=12% Similarity=0.116 Sum_probs=125.5
Q ss_pred cccCCC--CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 136 TLDETN--IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 136 ~f~~~~--l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
+|++++ |++.+.+.+++.||..| +|+|.++++.++ +|+|++ ++||||||||++|.+|+++.+.
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l---------~~~Q~~~i~~i~--~~~~~l----v~apTGsGKT~~~~l~il~~~~ 66 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEEL---------FPPQAEAVEKVF--SGKNLL----LAMPTAAGKTLLAEMAMVREAI 66 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CC---------CCCCHHHHHHHT--TCSCEE----EECSSHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCC---------CHHHHHHHHHHh--CCCcEE----EEcCCccHHHHHHHHHHHHHHH
Confidence 688998 99999999999999999 999999999999 999999 9999999999999999999876
Q ss_pred cCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----
Q psy10677 214 KMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN----- 288 (317)
Q Consensus 214 ~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~----- 288 (317)
. +.+++|++|||+||.|+++.++.+.. .|+++..++|+....+....-.+|+|+|||++..++..+
T Consensus 67 ~--------~~~~l~i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~ 137 (702)
T 2p6r_A 67 K--------GGKSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIK 137 (702)
T ss_dssp T--------TCCEEEEESSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGG
T ss_pred h--------CCcEEEEeCcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHh
Confidence 3 46899999999999999999975544 589999999988765432222349999999999998875
Q ss_pred CCCCCCCchhHHHhhhcCCcH
Q psy10677 289 DAHSPCLSVWRRLQDILGLTE 309 (317)
Q Consensus 289 ~~~~~~lde~d~l~~~~gf~~ 309 (317)
.+++.++||++.+.+ .++..
T Consensus 138 ~~~~vIiDE~H~l~~-~~r~~ 157 (702)
T 2p6r_A 138 AVSCLVVDEIHLLDS-EKRGA 157 (702)
T ss_dssp GCCEEEETTGGGGGC-TTTHH
T ss_pred hcCEEEEeeeeecCC-CCccc
Confidence 457889999999887 55544
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.81 E-value=1.8e-20 Score=192.48 Aligned_cols=133 Identities=14% Similarity=0.049 Sum_probs=110.2
Q ss_pred CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 153 KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 153 ~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
.|+..| +|+|.++++.++ .|+|++ +++|||||||++|++|++..+...+ ...++++|||+||
T Consensus 244 ~g~~~l---------~~~Q~~~i~~~l--~~~~~l----l~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt 305 (797)
T 4a2q_A 244 YETKKA---------RSYQIELAQPAI--NGKNAL----ICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATK 305 (797)
T ss_dssp ----CC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSS
T ss_pred cCCCCC---------CHHHHHHHHHHH--hCCCEE----EEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCC
Confidence 467778 999999999999 999999 9999999999999999999998652 2347899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc---cCcEEECcHHHHHHHhcCCC------CCCCCchhHHHhh
Q psy10677 233 RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL---RILTSATNTSLGIYLQQNDA------HSPCLSVWRRLQD 303 (317)
Q Consensus 233 reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~---~~ilv~TP~~l~~~l~~~~~------~~~~lde~d~l~~ 303 (317)
++|+.|+++.++++....++++..++||.+...+...+ ..|+|+||++|.+++..+.+ ++.++||||++.+
T Consensus 306 ~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~ 385 (797)
T 4a2q_A 306 VPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 385 (797)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCST
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCC
Confidence 99999999999999998899999999999776544433 34999999999999988755 7889999999876
No 46
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.81 E-value=1.4e-20 Score=197.93 Aligned_cols=121 Identities=13% Similarity=0.034 Sum_probs=108.5
Q ss_pred chhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q psy10677 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR 248 (317)
Q Consensus 169 ~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~ 248 (317)
++|.++||.++ +|+|++ ++||||||||+ |.+|++.++.. .++++|||+|||+||.|+++.+++++.
T Consensus 59 ~iQ~~ai~~il--~g~dvl----v~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~~l~~l~~ 124 (1054)
T 1gku_B 59 AIQKMWAKRIL--RKESFA----ATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAETIRKYAE 124 (1054)
T ss_dssp HHHHHHHHHHH--TTCCEE----CCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--hCCCEE----EEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 89999999999 999999 99999999998 99999998875 368999999999999999999999999
Q ss_pred CCCc----EEEEEECCCCHHHHH---HHc--cCcEEECcHHHHHHHhc-CCCCCCCCchhHHHhh
Q psy10677 249 TMRI----RHACLYGGTSKMYQV---ILL--RILTSATNTSLGIYLQQ-NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 249 ~~~~----~~~~~~gg~~~~~~~---~~~--~~ilv~TP~~l~~~l~~-~~~~~~~lde~d~l~~ 303 (317)
.+++ ++.+++||.+...+. ..+ .+|+|||||+|.+++.. +.+++.++||||+|++
T Consensus 125 ~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 125 KAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp TTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHT
T ss_pred hcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhh
Confidence 8888 999999999987743 222 34999999999998874 5777999999999998
No 47
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.1e-20 Score=199.16 Aligned_cols=146 Identities=8% Similarity=-0.088 Sum_probs=125.4
Q ss_pred ccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 135 KTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.+|+.+++++.+...+...++..| +++|.++|+.++ .|+|++ ++||||||||++|.+|++..+..
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~l---------tp~Q~~AI~~i~--~g~dvL----V~ApTGSGKTlva~l~i~~~l~~ 226 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTL---------DPFQDTAISCID--RGESVL----VSAHTSAGKTVVAEYAIAQSLKN 226 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCC---------CHHHHHHHHHHT--TTCCEE----EECCSSSHHHHHHHHHHHHHHHT
T ss_pred CCcccCCCChhhhHHHHHhCCCCC---------CHHHHHHHHHHH--cCCCEE----EECCCCCChHHHHHHHHHHHHhc
Confidence 478889999999999988877788 999999999999 999999 99999999999999999998853
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----C
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----D 289 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~ 289 (317)
+.+++|++|||+||.|+++.+.++.. .+..++|+.+.... ..|+|+|||+|.+++..+ .
T Consensus 227 --------g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~~~~----~~IlV~Tpe~L~~~L~~~~~~l~~ 290 (1108)
T 3l9o_A 227 --------KQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITINPD----AGCLVMTTEILRSMLYRGSEVMRE 290 (1108)
T ss_dssp --------TCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBCCCS----CSEEEEEHHHHHHHHHHCSSHHHH
T ss_pred --------CCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCccccCCC----CCEEEeChHHHHHHHHcCcccccc
Confidence 57999999999999999999999876 56778888874321 349999999999998876 4
Q ss_pred CCCCCCchhHHHhhhcCCcHHHH
Q psy10677 290 AHSPCLSVWRRLQDILGLTEETC 312 (317)
Q Consensus 290 ~~~~~lde~d~l~~~~gf~~~~~ 312 (317)
+.++++||||+|.+ .+|.....
T Consensus 291 l~lVVIDEaH~l~d-~~rg~~~e 312 (1108)
T 3l9o_A 291 VAWVIFDEVHYMRD-KERGVVWE 312 (1108)
T ss_dssp EEEEEEETGGGTTS-HHHHHHHH
T ss_pred CCEEEEhhhhhccc-cchHHHHH
Confidence 57899999999988 56554433
No 48
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.80 E-value=1e-20 Score=163.27 Aligned_cols=134 Identities=16% Similarity=0.021 Sum_probs=101.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHH-HHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQ-IQAVISIF 246 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Q-i~~~~~~l 246 (317)
+++|.++++.++ +|++++ +.+|||||||++|++|++..+..... ...++++||++||++|+.| +.+.++.+
T Consensus 35 ~~~Q~~~i~~~~--~~~~~l----i~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 35 RPYQMEVAQPAL--EGKNII----ICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CHHHHHHHHHHH--TTCCEE----EECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHh--cCCCEE----EEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 999999999999 999999 99999999999999999988765321 1246799999999999999 78889988
Q ss_pred hcCCCcEEEEEECCCCHHHHHH---HccCcEEECcHHHHHHHhcC-----------CCCCCCCchhHHHhhhcCCcHHH
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVI---LLRILTSATNTSLGIYLQQN-----------DAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~---~~~~ilv~TP~~l~~~l~~~-----------~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
... ++++..++|+.+...+.. .-..|+|+||+++.+++... .+++.++||||.+.+ .++....
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~-~~~~~~~ 183 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK-EAVYNNI 183 (216)
T ss_dssp HTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHH
T ss_pred hcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc-CCcHHHH
Confidence 876 788888888876543222 22459999999999988763 557889999999987 6666554
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.80 E-value=1.2e-19 Score=197.80 Aligned_cols=142 Identities=11% Similarity=0.073 Sum_probs=118.9
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCC
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEG 221 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~ 221 (317)
|.+...+++...+|..+ +|+|+++++.+++ ++.|++ ++||||||||++|.+|+++.+.+.
T Consensus 911 L~~~~~e~l~~~~f~~f---------npiQ~q~~~~l~~-~~~nvl----v~APTGSGKTliaelail~~l~~~------ 970 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFF---------NPIQTQVFNTVYN-SDDNVF----VGAPTGSGKTICAEFAILRMLLQS------ 970 (1724)
T ss_dssp SCCHHHHTTTTTTCSBC---------CHHHHHHHHHHHS-CCSCEE----EECCTTSCCHHHHHHHHHHHHHHC------
T ss_pred ccCHHHHHHHHhcCCCC---------CHHHHHHHHHHhc-CCCcEE----EEeCCCCCchHHHHHHHHHHHHhC------
Confidence 34455666777778877 9999999999984 667899 999999999999999999999864
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHH-HhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc-------CCCCCC
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISI-FSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ-------NDAHSP 293 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~-l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~-------~~~~~~ 293 (317)
.+.++||++|||+||.|+++.+++ |.+.+|+++..++|+++.+.....-.+|+||||+++..++.+ ..+.+.
T Consensus 971 ~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lv 1050 (1724)
T 4f92_B 971 SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLF 1050 (1724)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEE
T ss_pred CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEE
Confidence 356899999999999999999975 566689999999999877655544456999999999777754 268899
Q ss_pred CCchhHHHhh
Q psy10677 294 CLSVWRRLQD 303 (317)
Q Consensus 294 ~lde~d~l~~ 303 (317)
++||+|.|.|
T Consensus 1051 ViDE~H~l~d 1060 (1724)
T 4f92_B 1051 VVDEVHLIGG 1060 (1724)
T ss_dssp EECCGGGGGS
T ss_pred EeechhhcCC
Confidence 9999998766
No 50
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.78 E-value=8.3e-20 Score=190.23 Aligned_cols=133 Identities=14% Similarity=0.049 Sum_probs=108.9
Q ss_pred CCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 153 KTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 153 ~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
.|+..| +++|.++++.++ .|+|++ +++|||||||++|++|++..+...+ ...++++|||+||
T Consensus 244 ~~~~~~---------r~~Q~~ai~~il--~g~~~l----l~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt 305 (936)
T 4a2w_A 244 YETKKA---------RSYQIELAQPAI--NGKNAL----ICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATK 305 (936)
T ss_dssp ----CC---------CHHHHHHHHHHH--TTCCEE----EECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSS
T ss_pred cCCCCC---------CHHHHHHHHHHH--cCCCEE----EEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCC
Confidence 467778 999999999999 999999 9999999999999999998876542 2336789999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc---cCcEEECcHHHHHHHhcCCC------CCCCCchhHHHhh
Q psy10677 233 RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL---RILTSATNTSLGIYLQQNDA------HSPCLSVWRRLQD 303 (317)
Q Consensus 233 reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~---~~ilv~TP~~l~~~l~~~~~------~~~~lde~d~l~~ 303 (317)
++|+.|+++.++++....++++..++||.+...+...+ .+|+|+||++|.+++..+.+ ++.++||||++..
T Consensus 306 ~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~ 385 (936)
T 4a2w_A 306 VPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 385 (936)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCST
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCC
Confidence 99999999999999998899999999999766543332 34999999999999988654 7889999999776
No 51
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.78 E-value=7.3e-20 Score=186.26 Aligned_cols=128 Identities=14% Similarity=0.027 Sum_probs=112.1
Q ss_pred cCcCCCCCCCcCCCCCCCCchhhhhccccccccC------cCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCC
Q psy10677 150 MKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQA------KKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDG 223 (317)
Q Consensus 150 l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g------~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~ 223 (317)
+...+| .| |++|.++|+.++ .+ +|++ ++||||||||++|++|++..+.. +
T Consensus 362 ~~~lpf-~l---------t~~Q~~ai~~I~--~~l~~~~~~~~L----l~a~TGSGKTlvall~il~~l~~--------g 417 (780)
T 1gm5_A 362 IKSLPF-KL---------TNAQKRAHQEIR--NDMISEKPMNRL----LQGDVGSGKTVVAQLAILDNYEA--------G 417 (780)
T ss_dssp HHHSSS-CC---------CHHHHHHHHHHH--HHHHSSSCCCCE----EECCSSSSHHHHHHHHHHHHHHH--------T
T ss_pred HHhCCC-CC---------CHHHHHHHHHHH--hhccccCCCcEE----EEcCCCCCHHHHHHHHHHHHHHc--------C
Confidence 455677 67 999999999998 55 5899 99999999999999999998863 5
Q ss_pred ceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc-------cCcEEECcHHHHHHHhcCCCCCCCCc
Q psy10677 224 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL-------RILTSATNTSLGIYLQQNDAHSPCLS 296 (317)
Q Consensus 224 ~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~-------~~ilv~TP~~l~~~l~~~~~~~~~ld 296 (317)
.+++|++||++||.|+++.++++...++++++.++||.+..++...+ ..|+||||+++.+.+....+.+.++|
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEec
Confidence 79999999999999999999999998899999999999887654332 23899999999887777899999999
Q ss_pred hhHHH
Q psy10677 297 VWRRL 301 (317)
Q Consensus 297 e~d~l 301 (317)
|+|++
T Consensus 498 EaHr~ 502 (780)
T 1gm5_A 498 EQHRF 502 (780)
T ss_dssp SCCCC
T ss_pred ccchh
Confidence 99985
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.76 E-value=8e-19 Score=191.30 Aligned_cols=144 Identities=17% Similarity=0.115 Sum_probs=116.1
Q ss_pred CChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCC---
Q psy10677 142 IPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKL--- 218 (317)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~--- 218 (317)
||+....++. ||+.+ +++|++++|.+++ +++|++ ++||||||||++|.+|++..+.+....
T Consensus 66 Lp~~~~~~f~--g~~~l---------n~iQs~~~~~al~-~~~N~l----v~APTGsGKTlva~l~il~~l~~~~~~~~~ 129 (1724)
T 4f92_B 66 LPKYAQAGFE--GFKTL---------NRIQSKLYRAALE-TDENLL----LCAPTGAGKTNVALMCMLREIGKHINMDGT 129 (1724)
T ss_dssp SCGGGSTTCT--TCSBC---------CHHHHHTHHHHHT-CCCCEE----EECCTTSCCHHHHHHHHHHHHGGGCCTTSS
T ss_pred cCHHHHHhcC--CCCCC---------CHHHHHHHHHHHc-CCCcEE----EEeCCcchHHHHHHHHHHHHHHhhcccccc
Confidence 5555444442 68888 9999999999884 789999 999999999999999999999764321
Q ss_pred CCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc-------CCCC
Q psy10677 219 EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ-------NDAH 291 (317)
Q Consensus 219 ~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~-------~~~~ 291 (317)
....+.++|+++|||+||.|+++.+++..+.+|+++..++||++...+...-.+|+|+||+++-.++.. +.+.
T Consensus 130 ~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~ 209 (1724)
T 4f92_B 130 INVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVR 209 (1724)
T ss_dssp CCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEE
T ss_pred ccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcC
Confidence 123578999999999999999999999988899999999999886554333345999999997555443 3577
Q ss_pred CCCCchhHHH
Q psy10677 292 SPCLSVWRRL 301 (317)
Q Consensus 292 ~~~lde~d~l 301 (317)
+.++||++-+
T Consensus 210 ~vIiDEvH~l 219 (1724)
T 4f92_B 210 LIILDEIHLL 219 (1724)
T ss_dssp EEEETTGGGG
T ss_pred EEEEecchhc
Confidence 8999999744
No 53
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.71 E-value=1.1e-18 Score=157.73 Aligned_cols=123 Identities=12% Similarity=-0.043 Sum_probs=100.8
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|.++++.++ .+.+.+ +++|||||||+++++++...+... ..++||++||++|+.|+++.++++.
T Consensus 115 ~~~Q~~ai~~~l--~~~~~l----l~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 115 HWYQKDAVFEGL--VNRRRI----LNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CHHHHHHHHHHH--HHSEEE----ECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHH--hcCCeE----EEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhc
Confidence 999999999999 888888 999999999999999988877542 3489999999999999999999998
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHh--cCCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQ--QNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~--~~~~~~~~lde~d~l~~ 303 (317)
...+.++..++||.+.......-..|+|+||+++..... ...+++.++||||++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~ 239 (282)
T 1rif_A 182 LFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG 239 (282)
T ss_dssp SCCGGGEEECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCH
T ss_pred ccccceEEEEeCCCcchhhhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCc
Confidence 777788889989876643111223399999998876522 24678999999999765
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.70 E-value=1.3e-18 Score=175.80 Aligned_cols=128 Identities=16% Similarity=0.023 Sum_probs=103.0
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHH-HHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI-QAVISI 245 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi-~~~~~~ 245 (317)
++|+|.++++.++ .|+|++ +++|||||||++|++|++..+...+. .+.+.++||++||++|+.|+ .+.+++
T Consensus 8 l~~~Q~~~i~~il--~g~~~l----l~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~ 79 (699)
T 4gl2_A 8 LRPYQMEVAQPAL--EGKNII----ICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQP 79 (699)
T ss_dssp CCHHHHHHHHHHH--SSCCEE----ECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHH
T ss_pred ccHHHHHHHHHHH--hCCCEE----EEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 4999999999999 999999 99999999999999999998875321 12347899999999999999 999999
Q ss_pred HhcCCCcEEEEEECCCCHHHHHHH---ccCcEEECcHHHHHHHh-----------cCCCCCCCCchhHHHhh
Q psy10677 246 FSRTMRIRHACLYGGTSKMYQVIL---LRILTSATNTSLGIYLQ-----------QNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 246 l~~~~~~~~~~~~gg~~~~~~~~~---~~~ilv~TP~~l~~~l~-----------~~~~~~~~lde~d~l~~ 303 (317)
+... ++++..++|+.+...+... -..|+|+||++|.+++. ...+++.++||||++..
T Consensus 80 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~ 150 (699)
T 4gl2_A 80 FLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 150 (699)
T ss_dssp HHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT
T ss_pred HcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc
Confidence 9886 5899999999876543322 23499999999998873 23577889999998754
No 55
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.5e-17 Score=173.83 Aligned_cols=118 Identities=8% Similarity=-0.043 Sum_probs=102.5
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|.++++.++ +|++++ ++||||||||++|.+|++..+.. +.++||++||++|+.|+++.+.++.
T Consensus 88 ~~~Q~eai~~l~--~g~~vL----V~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 88 DPFQDTAISCID--RGESVL----VSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp CHHHHHHHHHHH--HTCEEE----EECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--cCCCEE----EECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHHh
Confidence 999999999999 999999 99999999999999999988752 5799999999999999999999887
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCc
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLT 308 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~ 308 (317)
. ++..++|+.+.... ..|+|+||++|.+++.++ .+.+.++||+|.|.+ .++.
T Consensus 154 ~----~vglltGd~~~~~~----~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d-~~rg 210 (1010)
T 2xgj_A 154 G----DVGLMTGDITINPD----AGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD-KERG 210 (1010)
T ss_dssp S----CEEEECSSCEECTT----CSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC-TTTH
T ss_pred C----CEEEEeCCCccCCC----CCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcc-cchh
Confidence 6 57788898875431 349999999999988765 566889999999988 5543
No 56
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.69 E-value=5.6e-18 Score=149.10 Aligned_cols=130 Identities=10% Similarity=-0.094 Sum_probs=99.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|.++++.+. +|++++ ++||||||||++|.+++++.+..... ..++++++++|||+||.|+.+.+....
T Consensus 63 ~~~q~~~i~~i~--~g~~~~----i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 63 KKFESEILEAIS--QNSVVI----IRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp GGGHHHHHHHHH--HCSEEE----EECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh--cCCEEE----EEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHHh
Confidence 899999999999 999999 99999999999999999998776432 345799999999999999988887654
Q ss_pred c-CCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc--CCCCCCCCchhHHH-hhhcCCcH
Q psy10677 248 R-TMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ--NDAHSPCLSVWRRL-QDILGLTE 309 (317)
Q Consensus 248 ~-~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~--~~~~~~~lde~d~l-~~~~gf~~ 309 (317)
. ..+..+........... ..-.+|+|||||+|++++.. ..+++.++||||++ ++ ++|..
T Consensus 134 ~~~~~~~~g~~~~~~~~~~--~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~-~~~~~ 196 (235)
T 3llm_A 134 GEEPGKSCGYSVRFESILP--RPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDIN-TDFLL 196 (235)
T ss_dssp TCCTTSSEEEEETTEEECC--CSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHH-HHHHH
T ss_pred ccccCceEEEeechhhccC--CCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcc-hHHHH
Confidence 4 23444333222111000 00123999999999999975 57889999999996 77 66663
No 57
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.68 E-value=6.4e-18 Score=176.58 Aligned_cols=122 Identities=9% Similarity=-0.059 Sum_probs=104.1
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|.++|+.++ +|+|++ ++||||||||++|++|+...+. .++++||++||++|+.|+++.+.++.
T Consensus 41 ~~~Q~~aI~~il--~g~~vl----v~apTGsGKTlv~~~~i~~~~~--------~g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 41 DTFQKEAVYHLE--QGDSVF----VAAHTSAGKTVVAEYAIAMAHR--------NMTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CHHHHHHHHHHH--TTCEEE----EECCTTSCSHHHHHHHHHHHHH--------TTCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHH--cCCCEE----EEECCCCcHHHHHHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 999999999999 999999 9999999999999999987654 35799999999999999999998875
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhhhcCCcHH
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQDILGLTEE 310 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~~~gf~~~ 310 (317)
. ++++..++|+.+...+ ..|+|+||++|.+++..+ .+.+.++||||++.+ .+|...
T Consensus 107 ~--~~~v~~l~G~~~~~~~----~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d-~~~g~~ 167 (997)
T 4a4z_A 107 D--DVNIGLITGDVQINPD----ANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND-QDRGVV 167 (997)
T ss_dssp ----CCEEEECSSCEECTT----SSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT-TCTTCC
T ss_pred C--CCeEEEEeCCCccCCC----CCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccc-cchHHH
Confidence 4 6788999998865432 359999999999988765 567889999999988 666554
No 58
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.66 E-value=1.5e-16 Score=151.88 Aligned_cols=123 Identities=15% Similarity=0.046 Sum_probs=105.6
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
++|+|.++++.++ .+ +++ +.+|||+|||++++++++..+.. .+.++||++||++|+.|..+.+.++
T Consensus 10 l~~~Q~~~i~~~~--~~-~~l----l~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 10 PRIYQEVIYAKCK--ET-NCL----IVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCHHHHHHHHHGG--GS-CEE----EECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHh--hC-CEE----EEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHH
Confidence 3999999999999 88 999 99999999999999999988762 3578999999999999999999999
Q ss_pred hcCCCcEEEEEECCCCHHHHHHHc--cCcEEECcHHHHHHHhcC-----CCCCCCCchhHHHhh
Q psy10677 247 SRTMRIRHACLYGGTSKMYQVILL--RILTSATNTSLGIYLQQN-----DAHSPCLSVWRRLQD 303 (317)
Q Consensus 247 ~~~~~~~~~~~~gg~~~~~~~~~~--~~ilv~TP~~l~~~l~~~-----~~~~~~lde~d~l~~ 303 (317)
....+.++..++|+.+........ ..|+|+||++|...+..+ .+++.++|||+.+.+
T Consensus 76 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 76 FNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVG 139 (494)
T ss_dssp BCSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCST
T ss_pred hCcchhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCC
Confidence 865566899999998877655443 349999999999987754 567889999998875
No 59
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.65 E-value=2.2e-17 Score=164.60 Aligned_cols=142 Identities=10% Similarity=-0.025 Sum_probs=97.5
Q ss_pred cccC-CCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 136 TLDE-TNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 136 ~f~~-~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.|+. +++++.++++|... ...| +|+|++++|.++ +|+|++ ++||||||||++|++|+++++..
T Consensus 150 ~~~~~l~~~~~~~~~l~~~-~~~~---------lpiq~~~i~~l~--~g~dvl----v~a~TGSGKT~~~~lpil~~l~~ 213 (618)
T 2whx_A 150 YGNGVVTKSGDYVSAITQA-ERIG---------EPDYEVDEDIFR--KKRLTI----MDLHPGAGKTKRILPSIVREALK 213 (618)
T ss_dssp CCC---------CEECBCC-CCCC---------CCCCCCCGGGGS--TTCEEE----ECCCTTSSTTTTHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHhhc-cccC---------CCccccCHHHHh--cCCeEE----EEcCCCCCHHHHHHHHHHHHHHh
Confidence 3444 67888888888875 5788 999999999999 999999 99999999999999999999875
Q ss_pred CCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc-cCcEEECcHHHHHHHh----cCC
Q psy10677 215 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL-RILTSATNTSLGIYLQ----QND 289 (317)
Q Consensus 215 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~-~~ilv~TP~~l~~~l~----~~~ 289 (317)
.++++||++||||||.|+++.++. ..+. ..++. .. ..... ..+.+.|.+.+...+. ...
T Consensus 214 -------~~~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~-l~-~~~tp~~~i~~~t~~~l~~~l~~~~~l~~ 277 (618)
T 2whx_A 214 -------RRLRTLILAPTRVVAAEMEEALRG------LPIR-YQTPA-VK-SDHTGREIVDLMCHATFTTRLLSSTRVPN 277 (618)
T ss_dssp -------TTCCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTT-SS-CCCCSSSCEEEEEHHHHHHHHHHCSSCCC
T ss_pred -------CCCeEEEEcChHHHHHHHHHHhcC------Ccee-Eeccc-ce-eccCCCceEEEEChHHHHHHHhccccccC
Confidence 368999999999999999988762 2222 11111 00 00000 1145566666654433 267
Q ss_pred CCCCCCchhHHHhhhcCCcHHH
Q psy10677 290 AHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 290 ~~~~~lde~d~l~~~~gf~~~~ 311 (317)
+++.++||||++ + ++|....
T Consensus 278 ~~~iViDEah~~-~-~~~~~~~ 297 (618)
T 2whx_A 278 YNLIVMDEAHFT-D-PCSVAAR 297 (618)
T ss_dssp CSEEEEESTTCC-S-HHHHHHH
T ss_pred CeEEEEECCCCC-C-ccHHHHH
Confidence 889999999998 5 5555443
No 60
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.64 E-value=2.7e-17 Score=160.21 Aligned_cols=123 Identities=12% Similarity=-0.055 Sum_probs=104.1
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
++.|.+|++.++ .++|++ +++|||||||++|++|+...+... ..++|||+||++|+.|+++.++++.
T Consensus 115 ~~~Q~~ai~~~~--~~~~~l----l~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~ 181 (510)
T 2oca_A 115 HWYQKDAVFEGL--VNRRRI----LNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYR 181 (510)
T ss_dssp CHHHHHHHHHHH--HHSEEE----EECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHH--hcCCcE----EEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhh
Confidence 999999999999 889999 999999999999999999887642 3599999999999999999999997
Q ss_pred cCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHH--HhcCCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIY--LQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~--l~~~~~~~~~lde~d~l~~ 303 (317)
...++++..++||.+..++...-..|+|+||+.|... ...+.+.+.++||++++..
T Consensus 182 ~~~~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~ 239 (510)
T 2oca_A 182 LFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG 239 (510)
T ss_dssp SSCGGGEEECGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCH
T ss_pred cCCccceEEEecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCc
Confidence 7777899999999887665322234999999988754 2234678999999998765
No 61
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.63 E-value=2.1e-16 Score=167.40 Aligned_cols=139 Identities=14% Similarity=-0.032 Sum_probs=111.6
Q ss_pred CCChhhhcccC-cCCCCCCCcCCCCCCCCchhhhhccccccc--cCc--CcccccceeccCCChhHHHHHHHHHHHHHcC
Q psy10677 141 NIPSYILGPMK-PKTTNNENNHNKNKKCGDKESKNWTIPLNF--QAK--KFISVLQKKAEVQSRSVFTYILPALYHILKM 215 (317)
Q Consensus 141 ~l~~~l~~~l~-~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~--~g~--dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~ 215 (317)
+.++...+.+. ..+|. | ||+|.+|++.++.+ +|+ |++ ++|+||||||++|+++++..+.
T Consensus 587 ~~~~~~~~~~~~~f~~~-~---------t~~Q~~ai~~il~~~~~g~p~d~l----l~~~TGsGKT~val~aa~~~~~-- 650 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-T---------TPDQAQAINAVLSDMCQPLAMDRL----VCGDVGFGKTEVAMRAAFLAVD-- 650 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-C---------CHHHHHHHHHHHHHHHSSSCCEEE----EECCCCTTTHHHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHhCCCC-C---------CHHHHHHHHHHHHHHhcCCcCcEE----EECCCCCCHHHHHHHHHHHHHH--
Confidence 34555555553 34665 7 99999999999831 165 999 9999999999999999987654
Q ss_pred CCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc-------cCcEEECcHHHHHHHhcC
Q psy10677 216 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL-------RILTSATNTSLGIYLQQN 288 (317)
Q Consensus 216 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~-------~~ilv~TP~~l~~~l~~~ 288 (317)
.+.+++|++||++||.|+++.++++....++++..++|+.+..++...+ .+|+||||+.+...+..+
T Consensus 651 ------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~ 724 (1151)
T 2eyq_A 651 ------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 724 (1151)
T ss_dssp ------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCS
T ss_pred ------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccc
Confidence 3569999999999999999999998888889999999888776554332 238999998876656667
Q ss_pred CCCCCCCchhHHH
Q psy10677 289 DAHSPCLSVWRRL 301 (317)
Q Consensus 289 ~~~~~~lde~d~l 301 (317)
.+.+.++||+|++
T Consensus 725 ~l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 725 DLGLLIVDEEHRF 737 (1151)
T ss_dssp SEEEEEEESGGGS
T ss_pred ccceEEEechHhc
Confidence 8889999999983
No 62
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.63 E-value=8.2e-17 Score=154.98 Aligned_cols=117 Identities=10% Similarity=0.011 Sum_probs=89.0
Q ss_pred CCCCCCcCCCCCCCCchhhhhccccccccCcCc-ccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 154 TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKF-ISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 154 g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dv-i~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
|+..| +|+|. ++|.++ +|+|+ + ++||||||||++|++|++.++.. .++++||++||
T Consensus 1 G~~q~---------~~iq~-~i~~~l--~~~~~~l----v~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Pt 57 (451)
T 2jlq_A 1 GSAMG---------EPDYE-VDEDIF--RKKRLTI----MDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPT 57 (451)
T ss_dssp CCCCC---------SCCCC-CCGGGG--STTCEEE----ECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESS
T ss_pred CCCCC---------CCcHH-HHHHHH--hcCCeEE----EECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCC
Confidence 67788 99986 799999 99888 8 89999999999999999998775 35899999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhHHH
Q psy10677 233 RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWRRL 301 (317)
Q Consensus 233 reLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~l 301 (317)
||||.|+++.+. ++.+....+.... ....-..+.++|||.+...+.. ..+++.++||||++
T Consensus 58 r~La~Q~~~~l~------g~~v~~~~~~~~~--~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~ 122 (451)
T 2jlq_A 58 RVVAAEMEEALR------GLPIRYQTPAVKS--DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT 122 (451)
T ss_dssp HHHHHHHHHHTT------TSCEEECCTTCSC--CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC
T ss_pred HHHHHHHHHHhc------Cceeeeeeccccc--cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC
Confidence 999999999874 2222221111111 0001112789999999877664 47789999999975
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.58 E-value=1e-15 Score=147.70 Aligned_cols=113 Identities=19% Similarity=0.090 Sum_probs=96.9
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+|.|.++++.++ .+.+++ +++|||||||++|+.++... +.++||++||++|+.|.++.+++|
T Consensus 95 ~~~Q~~ai~~i~--~~~~~l----l~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 95 RDYQEKALERWL--VDKRGC----IVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CHHHHHHHHHHT--TTTEEE----EECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CHHHHHHHHHHH--hcCCEE----EEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 999999999999 888999 99999999999999998753 468999999999999999988884
Q ss_pred cCCCcE-EEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc--CCCCCCCCchhHHHhhhcCCc
Q psy10677 248 RTMRIR-HACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ--NDAHSPCLSVWRRLQDILGLT 308 (317)
Q Consensus 248 ~~~~~~-~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~--~~~~~~~lde~d~l~~~~gf~ 308 (317)
+++ +..++|+.+. ...|+|+||+.+...+.. +.+.+.++||++++.+ .+|.
T Consensus 157 ---~~~~v~~~~g~~~~------~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~-~~~~ 210 (472)
T 2fwr_A 157 ---GEEYVGEFSGRIKE------LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPA-ESYV 210 (472)
T ss_dssp ---CGGGEEEBSSSCBC------CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTS-TTTH
T ss_pred ---CCcceEEECCCcCC------cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCC-hHHH
Confidence 678 8888777653 245999999999877653 5689999999999887 5554
No 64
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.56 E-value=2.3e-15 Score=148.41 Aligned_cols=119 Identities=15% Similarity=-0.013 Sum_probs=95.3
Q ss_pred Cchhhhhccc----cccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 168 GDKESKNWTI----PLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 168 t~iQ~~~ip~----~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.|.|.+++.. +. .|+|++ +.||||||||+||++|++. .+++++|++||++|+.|+.+.+
T Consensus 5 r~~Q~~~~~~v~~~l~--~~~~~~----~~a~TGtGKT~~~l~p~l~-----------~~~~v~i~~pt~~l~~q~~~~~ 67 (551)
T 3crv_A 5 RDWQEKLKDKVIEGLR--NNFLVA----LNAPTGSGKTLFSLLVSLE-----------VKPKVLFVVRTHNEFYPIYRDL 67 (551)
T ss_dssp CHHHHHHHHHHHHHHH--TTCEEE----EECCTTSSHHHHHHHHHHH-----------HCSEEEEEESSGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--cCCcEE----EECCCCccHHHHHHHHHHh-----------CCCeEEEEcCCHHHHHHHHHHH
Confidence 8999987654 45 899999 9999999999999999997 2579999999999999999999
Q ss_pred HHHhcCCCcEEEEEECCCCH---------------------------------HHHHHH---------------------
Q psy10677 244 SIFSRTMRIRHACLYGGTSK---------------------------------MYQVIL--------------------- 269 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~---------------------------------~~~~~~--------------------- 269 (317)
..+.+..+++++.+.|+.+. ......
T Consensus 68 ~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~ 147 (551)
T 3crv_A 68 TKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY 147 (551)
T ss_dssp TTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG
T ss_pred HHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh
Confidence 99988888999988774321 111111
Q ss_pred ccCcEEECcHHHHHHHhcCC------CCCCCCchhHHHhh
Q psy10677 270 LRILTSATNTSLGIYLQQND------AHSPCLSVWRRLQD 303 (317)
Q Consensus 270 ~~~ilv~TP~~l~~~l~~~~------~~~~~lde~d~l~~ 303 (317)
-.+|||+|+++|.+...++. ....++||||.|.|
T Consensus 148 ~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 148 KADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred cCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 22499999999998755442 33578999999987
No 65
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.55 E-value=4.9e-17 Score=163.39 Aligned_cols=118 Identities=8% Similarity=-0.010 Sum_probs=86.4
Q ss_pred hcccCcCCCC-----CCCcCCCCCCCCchhh-----hhcccccc----ccCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 147 LGPMKPKTTN-----NENNHNKNKKCGDKES-----KNWTIPLN----FQAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 147 ~~~l~~~g~~-----~p~~~~~~~~~t~iQ~-----~~ip~~l~----~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+.+|...||. .| |+||. ++||.++. .+|+|++ ++||||||||++|++|+++.+
T Consensus 200 ~~~l~~~Gf~~~~~~~p---------t~IQ~~~r~~~aIp~~l~~~~l~~g~dvl----v~apTGSGKTl~~ll~il~~l 266 (673)
T 2wv9_A 200 IIGLYGNGVILGNGAYV---------SAIVQGERVEEPVPEAYNPEMLKKRQLTV----LDLHPGAGKTRRILPQIIKDA 266 (673)
T ss_dssp EEEEEEEEEECSSSCEE---------EEEECC-------CCCCCGGGGSTTCEEE----ECCCTTTTTTTTHHHHHHHHH
T ss_pred eEEeeeccccccCCCcc---------CceeeccccccchHHHhhHHHHhcCCeEE----EEeCCCCCHHHHHHHHHHHHH
Confidence 3477778887 78 99999 99998761 2699999 999999999999999999987
Q ss_pred HcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHh------
Q psy10677 213 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQ------ 286 (317)
Q Consensus 213 ~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~------ 286 (317)
.. .++++||++|||+||.|+++.++.+ ++. ...+.. . .++||+++++++.
T Consensus 267 ~~-------~~~~~lilaPTr~La~Q~~~~l~~~----~i~--~~~~~l---------~--~v~tp~~ll~~l~~~~l~~ 322 (673)
T 2wv9_A 267 IQ-------KRLRTAVLAPTRVVAAEMAEALRGL----PVR--YLTPAV---------Q--REHSGNEIVDVMCHATLTH 322 (673)
T ss_dssp HH-------TTCCEEEEESSHHHHHHHHHHTTTS----CCE--ECCC--------------CCCCSCCCEEEEEHHHHHH
T ss_pred Hh-------CCCcEEEEccHHHHHHHHHHHHhcC----Cee--eecccc---------c--ccCCHHHHHHHHHhhhhHH
Confidence 75 3689999999999999999888744 232 111100 0 1566666542221
Q ss_pred -------cCCCCCCCCchhHHH
Q psy10677 287 -------QNDAHSPCLSVWRRL 301 (317)
Q Consensus 287 -------~~~~~~~~lde~d~l 301 (317)
...+.+.++||+|++
T Consensus 323 ~l~~~~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 323 RLMSPLRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp HHHSSSCCCCCSEEEEESTTCC
T ss_pred HHhcccccccceEEEEeCCccc
Confidence 357889999999998
No 66
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.54 E-value=6.5e-16 Score=153.91 Aligned_cols=117 Identities=14% Similarity=-0.071 Sum_probs=85.9
Q ss_pred chhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhc
Q psy10677 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR 248 (317)
Q Consensus 169 ~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~ 248 (317)
+.|.++++.+. +++|++ ++||||||||++|.+|+++ .+.++||++||||||.|+++.+.+..
T Consensus 220 ~~q~~i~~~L~--~~~~vl----v~ApTGSGKT~a~~l~ll~-----------~g~~vLVl~PTReLA~Qia~~l~~~~- 281 (666)
T 3o8b_A 220 TDNSSPPAVPQ--SFQVAH----LHAPTGSGKSTKVPAAYAA-----------QGYKVLVLNPSVAATLGFGAYMSKAH- 281 (666)
T ss_dssp CCCCSCCCCCS--SCEEEE----EECCTTSCTTTHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHH--cCCeEE----EEeCCchhHHHHHHHHHHH-----------CCCeEEEEcchHHHHHHHHHHHHHHh-
Confidence 44555555555 889999 9999999999999999885 24689999999999999998766554
Q ss_pred CCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHH--HhcCCCCCCCCchhHHHhhhcCCcHHH
Q psy10677 249 TMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIY--LQQNDAHSPCLSVWRRLQDILGLTEET 311 (317)
Q Consensus 249 ~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~--l~~~~~~~~~lde~d~l~~~~gf~~~~ 311 (317)
+.++...+|+... ..-.+|+|+|||+|+.- +....+++.++||| .+++ ++|.++.
T Consensus 282 --g~~vg~~vG~~~~----~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEA-H~l~-~~~~~~l 338 (666)
T 3o8b_A 282 --GIDPNIRTGVRTI----TTGAPVTYSTYGKFLADGGCSGGAYDIIICDEC-HSTD-STTILGI 338 (666)
T ss_dssp --SCCCEEECSSCEE----CCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTT-TCCS-HHHHHHH
T ss_pred --CCCeeEEECcEec----cCCCCEEEECcHHHHhCCCcccCcccEEEEccc-hhcC-ccHHHHH
Confidence 4456677777552 11123999999998431 11235778999999 6777 6665543
No 67
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.51 E-value=6.2e-15 Score=129.96 Aligned_cols=109 Identities=19% Similarity=0.100 Sum_probs=91.8
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+++|.++++.++ .+++++ +++|||+|||++++.++... +.+++|++||++|+.|.++.+.++
T Consensus 95 ~~~Q~~ai~~~~--~~~~~l----l~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~- 156 (237)
T 2fz4_A 95 RDYQEKALERWL--VDKRGC----IVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF- 156 (237)
T ss_dssp CHHHHHHHHHHT--TTSEEE----EEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHH--hCCCEE----EEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC-
Confidence 999999999999 888899 99999999999998887642 457999999999999999888873
Q ss_pred cCCCcE-EEEEECCCCHHHHHHHccCcEEECcHHHHHHHhc--CCCCCCCCchhHHHhh
Q psy10677 248 RTMRIR-HACLYGGTSKMYQVILLRILTSATNTSLGIYLQQ--NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~-~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~--~~~~~~~lde~d~l~~ 303 (317)
+++ +..+.|+... ...|+|+||+.+...+.. +.+.+.++||++.+.+
T Consensus 157 ---~~~~v~~~~g~~~~------~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~ 206 (237)
T 2fz4_A 157 ---GEEYVGEFSGRIKE------LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPA 206 (237)
T ss_dssp ---CGGGEEEESSSCBC------CCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCT
T ss_pred ---CCCeEEEEeCCCCC------cCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCC
Confidence 677 7777776543 345999999999876654 5689999999998876
No 68
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.49 E-value=1.2e-15 Score=146.41 Aligned_cols=95 Identities=9% Similarity=0.012 Sum_probs=74.3
Q ss_pred ccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEE
Q psy10677 177 IPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHAC 256 (317)
Q Consensus 177 ~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~ 256 (317)
.++ +|+|++ ++||||||||++|++|+++.+... +++++|++||++||.|+++.++.+ ++. .
T Consensus 4 ~l~--~g~~vl----v~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~----~v~--~ 64 (440)
T 1yks_A 4 MLK--KGMTTV----LDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGL----DVK--F 64 (440)
T ss_dssp TTS--TTCEEE----ECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS----CEE--E
T ss_pred Hhh--CCCCEE----EEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcC----CeE--E
Confidence 456 899999 999999999999999999988753 689999999999999999988733 222 1
Q ss_pred EECCCCHHHHHHHccCcEEECcHHHHHHHh-------------cCCCCCCCCchhHHH
Q psy10677 257 LYGGTSKMYQVILLRILTSATNTSLGIYLQ-------------QNDAHSPCLSVWRRL 301 (317)
Q Consensus 257 ~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~-------------~~~~~~~~lde~d~l 301 (317)
..+.. -.|+||+++++++. ...+.+.++||+|++
T Consensus 65 ~~~~~-----------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~ 111 (440)
T 1yks_A 65 HTQAF-----------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL 111 (440)
T ss_dssp ESSCC-----------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC
T ss_pred ecccc-----------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc
Confidence 11111 14888888764333 367889999999998
No 69
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.49 E-value=2.3e-15 Score=153.66 Aligned_cols=149 Identities=9% Similarity=-0.000 Sum_probs=107.2
Q ss_pred CCcccccCCCCChhhhcccCcCCCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHH
Q psy10677 132 KPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYH 211 (317)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~ 211 (317)
.++.+|+++++++.+.+.+++.+ ..| +++|.++|+.++. .|++++ ++||||||||+ ++|++..
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP---------~~~q~~~i~~~l~-~~~~vi----i~gpTGSGKTt--llp~ll~ 131 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELP---------VHAQRDEFLKLYQ-NNQIMV----FVGETGSGKTT--QIPQFVL 131 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSG---------GGGGHHHHHHHHH-HCSEEE----EECCTTSSHHH--HHHHHHH
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCC---------hHHHHHHHHHHHh-CCCeEE----EECCCCCCHHH--HHHHHHH
Confidence 45678999999999999999888 789 9999999999883 556799 99999999999 6777733
Q ss_pred HHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC-CHHHHHHHccCcEEECcHHHHHHHhc---
Q psy10677 212 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT-SKMYQVILLRILTSATNTSLGIYLQQ--- 287 (317)
Q Consensus 212 l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~-~~~~~~~~~~~ilv~TP~~l~~~l~~--- 287 (317)
.... ..+.+++++|++|||+||.|+++.+.... ++++...+|+. ........-..|+++|||++.+.+..
T Consensus 132 ~~~~---~~~~g~~ilvl~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~ 205 (773)
T 2xau_A 132 FDEM---PHLENTQVACTQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHD 205 (773)
T ss_dssp HHHC---GGGGTCEEEEEESCHHHHHHHHHHHHHHT---TCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTT
T ss_pred Hhcc---ccCCCceEEecCchHHHHHHHHHHHHHHh---CCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCcc
Confidence 2221 11236789999999999999988665543 22222222211 11100011223999999999987654
Q ss_pred -CCCCCCCCchhHH-Hhh
Q psy10677 288 -NDAHSPCLSVWRR-LQD 303 (317)
Q Consensus 288 -~~~~~~~lde~d~-l~~ 303 (317)
..+.+.++||+|. +++
T Consensus 206 l~~~~~lIlDEah~R~ld 223 (773)
T 2xau_A 206 LSRYSCIILDEAHERTLA 223 (773)
T ss_dssp CTTEEEEEECSGGGCCHH
T ss_pred ccCCCEEEecCccccccc
Confidence 4677899999995 665
No 70
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.42 E-value=6.3e-14 Score=134.03 Aligned_cols=143 Identities=20% Similarity=0.300 Sum_probs=119.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||+|++++++++.++.+|..+.++..+ ....++.|.++.++..+|...|.+++.
T Consensus 241 ~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~ 319 (434)
T 2db3_A 241 MFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKYAKRSKLIEILSEQADGTIVFVETKRGADFLASF 319 (434)
T ss_dssp EEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEEECCGGGHHHHHHHHHHHCCTTEEEECSSHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEEEeCcHHHHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH
Confidence 589999999999999999999999998777 677899999999998889888887774
Q ss_pred ----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHH
Q psy10677 59 ----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDS 116 (317)
Q Consensus 59 ----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~ 116 (317)
+||+++| +|++|+.+|||| +||+|+ .++..|++|++|... ++++++
T Consensus 320 L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi------~~v~~VI~~d~p~~~------~~y~qr 387 (434)
T 2db3_A 320 LSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDI------KNIKHVINYDMPSKI------DDYVHR 387 (434)
T ss_dssp HHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCC------TTCCEEEESSCCSSH------HHHHHH
T ss_pred HHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCc------ccCCEEEEECCCCCH------HHHHHH
Confidence 9999998 999999999999 999999 899999999998754 789999
Q ss_pred HHHHCCceeecCCCCCCccc-ccCCCCChhhhcccCcCCCCCC
Q psy10677 117 FRKEHNITLIGQNIPKPVKT-LDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 117 ~~~~~~i~~~g~~~~~~~~~-f~~~~l~~~l~~~l~~~g~~~p 158 (317)
.+|.+|.+-.|..+ .+.+ -++..+...+.+.|++.+-..|
T Consensus 388 iGR~gR~g~~G~a~--~~~~~~~~~~~~~~l~~~l~~~~~~vp 428 (434)
T 2db3_A 388 IGRTGRVGNNGRAT--SFFDPEKDRAIAADLVKILEGSGQTVP 428 (434)
T ss_dssp HTTSSCTTCCEEEE--EEECTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred hcccccCCCCCEEE--EEEeccccHHHHHHHHHHHHHcCCCCC
Confidence 99998887666543 1212 2344566677788877777666
No 71
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.40 E-value=9.4e-14 Score=133.91 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=80.8
Q ss_pred cccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEE
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHA 255 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~ 255 (317)
..+. +|++++ ++||||||||++|++|+++++.. .++++||++|||+||.|+++.++ +..+.
T Consensus 16 ~~l~--~~~~vl----v~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~ 76 (459)
T 2z83_A 16 NMLR--KRQMTV----LDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALR------GLPVR 76 (459)
T ss_dssp GGGS--TTCEEE----ECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTT------TSCEE
T ss_pred HHHh--cCCcEE----EECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhc------CceEe
Confidence 3455 899999 99999999999999999998875 35899999999999999999886 22222
Q ss_pred EEECCCCHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhHH-----HhhhcCCcHHH
Q psy10677 256 CLYGGTSKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWRR-----LQDILGLTEET 311 (317)
Q Consensus 256 ~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~-----l~~~~gf~~~~ 311 (317)
...+..... ...-..+.+.|.+.+...+.. +.+.+.++||||+ +++ +||..+.
T Consensus 77 ~~~~~~~~~--~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~-~~~~~~~ 138 (459)
T 2z83_A 77 YQTSAVQRE--HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAA-RGYIATK 138 (459)
T ss_dssp ECC----------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHH-HHHHHHH
T ss_pred EEecccccC--CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHH-HHHHHHH
Confidence 221111110 011112567888887655543 4788999999998 677 7776554
No 72
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.35 E-value=9.2e-14 Score=139.44 Aligned_cols=117 Identities=11% Similarity=-0.014 Sum_probs=81.7
Q ss_pred hhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCC
Q psy10677 171 ESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM 250 (317)
Q Consensus 171 Q~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~ 250 (317)
|.......+ +|++++ ++||||||||+ +++..+... ..++|++|||+||.|+++.++++
T Consensus 145 ~~~p~ar~l--~rk~vl----v~apTGSGKT~----~al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~---- 202 (677)
T 3rc3_A 145 NWYPDARAM--QRKIIF----HSGPTNSGKTY----HAIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA---- 202 (677)
T ss_dssp GGCHHHHTS--CCEEEE----EECCTTSSHHH----HHHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----
T ss_pred hhCHHHHhc--CCCEEE----EEcCCCCCHHH----HHHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----
Confidence 333344567 999999 99999999998 555666543 34599999999999999998775
Q ss_pred CcEEEEEECCCCHHHHH-HHccCcEEECcHHHHHHHhcCCCCCCCCchhHHHhhhcCCcHHHHh
Q psy10677 251 RIRHACLYGGTSKMYQV-ILLRILTSATNTSLGIYLQQNDAHSPCLSVWRRLQDILGLTEETCV 313 (317)
Q Consensus 251 ~~~~~~~~gg~~~~~~~-~~~~~ilv~TP~~l~~~l~~~~~~~~~lde~d~l~~~~gf~~~~~~ 313 (317)
++++..++||.+..... .....++++|+..+. ....+.+.++||+|+++| .+|......
T Consensus 203 g~~v~lltG~~~~iv~TpGr~~~il~~T~e~~~---l~~~v~lvVIDEaH~l~d-~~~g~~~~~ 262 (677)
T 3rc3_A 203 GVPCDLVTGEERVTVQPNGKQASHVSCTVEMCS---VTTPYEVAVIDEIQMIRD-PARGWAWTR 262 (677)
T ss_dssp TCCEEEECSSCEECCSTTCCCCSEEEEEGGGCC---SSSCEEEEEECSGGGGGC-TTTHHHHHH
T ss_pred CCcEEEEECCeeEEecCCCcccceeEecHhHhh---hcccCCEEEEecceecCC-ccchHHHHH
Confidence 67889999987651000 001224555553221 124568899999999998 888765543
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.33 E-value=3.2e-13 Score=141.07 Aligned_cols=121 Identities=12% Similarity=-0.067 Sum_probs=93.3
Q ss_pred CCchhhhhccccccc------------cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHH
Q psy10677 167 CGDKESKNWTIPLNF------------QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRE 234 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~------------~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptre 234 (317)
++|+|..|++.++.. .+++.+ +.++||||||+++ ++++..+... ....++|||||+++
T Consensus 272 ~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gl----i~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~e 341 (1038)
T 2w00_A 272 MRPYQIAATERILWKIKSSFTAKNWSKPESGGY----IWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKD 341 (1038)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEE----EEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGG
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCCCEE----EEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHH
Confidence 499999999998820 147889 9999999999997 7777555432 23469999999999
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHcc----CcEEECcHHHHHHHhcC-------CCCCCCCchhHHHhh
Q psy10677 235 LAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR----ILTSATNTSLGIYLQQN-------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 235 La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~----~ilv~TP~~l~~~l~~~-------~~~~~~lde~d~l~~ 303 (317)
|+.|+.+.++.+... .+.|+.+.......+. .|+|+||++|.++++.. ...+.++|||+++..
T Consensus 342 L~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp CCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc
Confidence 999999999988764 1346666665555552 38999999999987643 345778999999875
No 74
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.32 E-value=6e-13 Score=127.27 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=71.7
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.|+|++ ++||||||||++|++|+++++.. .+++++|++||++||.|+++.++ ++.+....|+.
T Consensus 1 kg~~~l----v~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~ 63 (431)
T 2v6i_A 1 KRELTV----LDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAV 63 (431)
T ss_dssp -CCEEE----EECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC----
T ss_pred CCCEEE----EEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCc
Confidence 478899 99999999999999999987765 36799999999999999998775 34555555543
Q ss_pred CHHHHHHHc-cCcEEECcHHHHHHHhc----CCCCCCCCchhHHH
Q psy10677 262 SKMYQVILL-RILTSATNTSLGIYLQQ----NDAHSPCLSVWRRL 301 (317)
Q Consensus 262 ~~~~~~~~~-~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~l 301 (317)
.. ...- ..+.+.|.|.+...+.. ..+.+.++||+|++
T Consensus 64 ~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~ 105 (431)
T 2v6i_A 64 QS---ERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFL 105 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCC
T ss_pred cc---cCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccC
Confidence 22 1111 12566788877654443 47889999999986
No 75
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.31 E-value=9.4e-13 Score=129.41 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=58.2
Q ss_pred Cchhhhhcc----ccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 168 GDKESKNWT----IPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 168 t~iQ~~~ip----~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
+|+|.+++. .+. .|++++ +.||||||||+||++|++.. +++++|++||++|+.|+.+.+
T Consensus 9 r~~Q~~~~~~v~~~~~--~~~~~~----~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 9 RQWQAEKLGEAINALK--HGKTLL----LNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp CCHHHHHHHHHHHHHH--TTCEEE----EECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--cCCCEE----EEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 999999864 455 889999 99999999999999999753 479999999999999999887
Q ss_pred HHHhcCCCcEEEEEEC
Q psy10677 244 SIFSRTMRIRHACLYG 259 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~g 259 (317)
..+ +++++.+.|
T Consensus 72 ~~l----~~~~~~l~g 83 (540)
T 2vl7_A 72 KLL----GLKTGFLIG 83 (540)
T ss_dssp GGG----TCCEEEC--
T ss_pred Hhc----CCcEEEecC
Confidence 774 455555444
No 76
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.30 E-value=3.4e-13 Score=133.69 Aligned_cols=122 Identities=12% Similarity=0.045 Sum_probs=70.8
Q ss_pred CCCchhhhhcccccccc----C-cCcccccceeccCCChhHHHHHHHHHHHHHcCC--CCCCCCCceEEEEcCcHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQ----A-KKFISVLQKKAEVQSRSVFTYILPALYHILKMP--KLEEGDGPIALVLAPTRELAQQ 238 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~----g-~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~--~~~~~~~~~alil~PtreLa~Q 238 (317)
.++++|.++++.++ . | ++++ ++++||||||+++ ++++.++.... ......++++|||+||++|+.|
T Consensus 178 ~lr~~Q~~ai~~~~--~~~~~~~~~~l----l~~~TGsGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q 250 (590)
T 3h1t_A 178 SPRYYQQIAINRAV--QSVLQGKKRSL----ITMATGTGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDD 250 (590)
T ss_dssp -CCHHHHHHHHHHH--HHHHTTCSEEE----EEECTTSCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-------
T ss_pred CchHHHHHHHHHHH--HHHhcCCCceE----EEecCCCChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHH
Confidence 34999999999988 5 4 5688 9999999999996 45556655432 0111257899999999999999
Q ss_pred HH-HHHHHHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHHHh---------cCCCCCCCCchhHHHhh
Q psy10677 239 IQ-AVISIFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIYLQ---------QNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 239 i~-~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~l~---------~~~~~~~~lde~d~l~~ 303 (317)
++ +.++.+.. .+..+.++... .-..|+|+||++|...+. ...+++.++||||++..
T Consensus 251 ~~~~~~~~~~~----~~~~~~~~~~~-----~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~ 316 (590)
T 3h1t_A 251 PKDKTFTPFGD----ARHKIEGGKVV-----KSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSA 316 (590)
T ss_dssp ----CCTTTCS----SEEECCC--CC-----SSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----
T ss_pred HHHHHHHhcch----hhhhhhccCCC-----CCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccc
Confidence 99 77766543 33333333211 122499999999988753 23577899999999876
No 77
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.15 E-value=1.7e-11 Score=122.25 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=72.7
Q ss_pred Cchhhhhcc----ccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 168 GDKESKNWT----IPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 168 t~iQ~~~ip----~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.|.|.+.+. .+. .|++++ +.||||||||+||++|++.++.. .+++++|++||++|+.|+.+.+
T Consensus 5 R~~Q~~~~~~v~~~l~--~~~~~~----~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQ--KSYGVA----LESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp CHHHHHHHHHHHHHHH--HSSEEE----EECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--cCCCEE----EECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHH
Confidence 889988874 456 899999 99999999999999999999865 2579999999999999999999
Q ss_pred HHHhcCCCcEEEEEECCCC
Q psy10677 244 SIFSRTMRIRHACLYGGTS 262 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~ 262 (317)
..+.+..+++++.++|+.+
T Consensus 72 ~~l~~~~~~~~~~l~gr~~ 90 (620)
T 4a15_A 72 RSLSSTMKIRAIPMQGRVN 90 (620)
T ss_dssp HHHHHHSCCCEEECCCHHH
T ss_pred HHHhhccCeEEEEEECCCc
Confidence 9999877899999888654
No 78
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.12 E-value=2e-11 Score=115.10 Aligned_cols=143 Identities=27% Similarity=0.335 Sum_probs=112.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||+|.+++.++..++.+|..+.+.... ....++.|.+..++..+|...|.++++
T Consensus 215 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~ 293 (417)
T 2i4i_A 215 MFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLE 293 (417)
T ss_dssp EEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHH
Confidence 489999999999999999999998887766 567889999999998888888877774
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||++++ +|++|+.+|||| ++|+|+ .++..+++|+.|... ..++
T Consensus 294 ~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi------p~v~~Vi~~~~p~s~------~~~~ 361 (417)
T 2i4i_A 294 DFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDI------SNVKHVINFDLPSDI------EEYV 361 (417)
T ss_dssp HHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCC------CCEEEEEESSCCSSH------HHHH
T ss_pred HHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCc------ccCCEEEEEcCCCCH------HHHH
Confidence 8999997 899999999999 999999 889999999988654 6788
Q ss_pred HHHHHHCCceeecCCCCCCcccccCCCCChhhhcccCcCCCCCC
Q psy10677 115 DSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p 158 (317)
++.++.++.+-.|..+ .+.+-++...-..+.+.+...+...|
T Consensus 362 Qr~GR~gR~g~~g~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 403 (417)
T 2i4i_A 362 HRIGRTGRVGNLGLAT--SFFNERNINITKDLLDLLVEAKQEVP 403 (417)
T ss_dssp HHHTTBCC--CCEEEE--EEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred HhcCccccCCCCceEE--EEEccccHHHHHHHHHHHHHhcCcCC
Confidence 8888887775555443 33444566666777777776665555
No 79
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.10 E-value=1.1e-10 Score=116.06 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=99.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.++|..+.-.+. +|+ + +...||+|||+++.+|++-..+. |..+.|++||++||.|-.+++..+.
T Consensus 77 ~dvQligg~~L~--~G~--i----aEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 77 FDVQVMGGIALH--EGK--V----AEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp CHHHHHHHHHHH--TTC--E----EECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHh--CCC--h----hhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHH
Confidence 999999998888 888 7 88999999999999999866543 5679999999999999999999999
Q ss_pred cCCCcEEEEEEC--------------------------------------------------CCCHHHHHHHccC-cEEE
Q psy10677 248 RTMRIRHACLYG--------------------------------------------------GTSKMYQVILLRI-LTSA 276 (317)
Q Consensus 248 ~~~~~~~~~~~g--------------------------------------------------g~~~~~~~~~~~~-ilv~ 276 (317)
+.+|+++++++. +.+..+...+... |+-|
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYg 220 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYG 220 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEc
Confidence 999999999998 3343444444433 9999
Q ss_pred CcHHHH-HHHhcC-----------CCCCCCCchhHHHhh
Q psy10677 277 TNTSLG-IYLQQN-----------DAHSPCLSVWRRLQD 303 (317)
Q Consensus 277 TP~~l~-~~l~~~-----------~~~~~~lde~d~l~~ 303 (317)
|+..+. |+|..+ .+++..+||+|.+|=
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLI 259 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLI 259 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHT
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceee
Confidence 999986 666643 567888999998763
No 80
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.09 E-value=8.8e-12 Score=106.11 Aligned_cols=102 Identities=18% Similarity=0.117 Sum_probs=71.1
Q ss_pred HHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc--------------------------------CCCC
Q psy10677 15 KEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN--------------------------------GHYP 62 (317)
Q Consensus 15 ~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~--------------------------------lhg~ 62 (317)
-.||++|+.|.++..+ .+..+|+|+|+.+++.+|...|.+++. +||+
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 4689999999998877 688899999999999999999998885 9999
Q ss_pred ccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCC
Q psy10677 63 KSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQN 129 (317)
Q Consensus 63 ~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~ 129 (317)
|++ +|++|+.+|||| +||+|+ .++..+++|+.|... ..++++.++.++.+-.|..
T Consensus 88 ~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi------~~v~~VI~~d~p~~~------~~~~qr~GR~gR~g~~g~~ 154 (191)
T 2p6n_A 88 KDQEERTKAIEAFREGKKDVLVATDVASKGLDF------PAIQHVINYDMPEEI------ENYVHRIGRTGCSGNTGIA 154 (191)
T ss_dssp SCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCC------CCCSEEEESSCCSSH------HHHHHHHTTSCC---CCEE
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCc------ccCCEEEEeCCCCCH------HHHHHHhCccccCCCCcEE
Confidence 998 999999999999 999999 788999999988654 6788888888877665543
No 81
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.98 E-value=1.8e-10 Score=111.59 Aligned_cols=122 Identities=12% Similarity=0.050 Sum_probs=89.3
Q ss_pred CCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
++|+|.++++.+.. ..|++++ ++.+||+|||+..+. ++..+... .....+||+||+ .|+.|..++++
T Consensus 38 L~~~Q~~~v~~l~~~~~~~~~~i----lad~~GlGKT~~ai~-~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~ 106 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMNKLGFGIC----LADDMGLGKTLQTIA-VFSDAKKE-----NELTPSLVICPL-SVLKNWEEELS 106 (500)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCEE----ECCCTTSCHHHHHHH-HHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCCCEE----EEeCCCCcHHHHHHH-HHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHH
Confidence 39999999987631 1688999 999999999999654 45555432 234689999995 58999999999
Q ss_pred HHhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHHHH--HhcCCCCCCCCchhHHHhh
Q psy10677 245 IFSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLGIY--LQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 245 ~l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~~--l~~~~~~~~~lde~d~l~~ 303 (317)
++.. ++++..+.|+.... ...-..|+|+|++++... +.....++.++|||+++-+
T Consensus 107 ~~~~--~~~v~~~~g~~~~~--~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn 163 (500)
T 1z63_A 107 KFAP--HLRFAVFHEDRSKI--KLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKN 163 (500)
T ss_dssp HHCT--TSCEEECSSSTTSC--CGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSC
T ss_pred HHCC--CceEEEEecCchhc--cccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCC
Confidence 9876 45666666665321 111123899999999754 4556778999999999865
No 82
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.93 E-value=2.7e-10 Score=109.81 Aligned_cols=123 Identities=19% Similarity=0.246 Sum_probs=25.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC-CCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE-YEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~-~~K~~~L~~ll~--------------------- 58 (317)
+||||+|.++..++..++.+|..+.+.... .....+.|.++.++. ..|...|..++.
T Consensus 272 ~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~ 350 (479)
T 3fmp_B 272 LFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 350 (479)
T ss_dssp EEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------------------------------
T ss_pred EEeCCCCHHHHHHHHHHcCCCeEEeccccc-cCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHH
Confidence 589999999999999999999999988776 567788888888765 456666666554
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|++ .|++|+.+|||| ++|+|+ .++..|++|+.|.......-...++
T Consensus 351 ~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDi------p~v~~VI~~d~p~~~~~~~s~~~~~ 424 (479)
T 3fmp_B 351 AELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV------EQVSVVINFDLPVDKDGNPDNETYL 424 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcc------ccCCEEEEecCCCCCccCCCHHHHH
Confidence 9999997 999999999999 999999 8899999999885431111125678
Q ss_pred HHHHHHCCceeecCCC
Q psy10677 115 DSFRKEHNITLIGQNI 130 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~~ 130 (317)
++.+|.+|.+-.|..+
T Consensus 425 Qr~GRagR~g~~G~~i 440 (479)
T 3fmp_B 425 HRIGRTGRFGKRGLAV 440 (479)
T ss_dssp ----------------
T ss_pred HHhcccccCCCCceEE
Confidence 8888887766666543
No 83
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.85 E-value=9.7e-10 Score=114.83 Aligned_cols=122 Identities=11% Similarity=-0.080 Sum_probs=88.8
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+|+|.+++..++...+.+++ ++++||+|||+.++..+...+... ...++|||||+ .|+.|..+.+.+..
T Consensus 155 rpyQ~eav~~~l~~~~~~~L----Lad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f 223 (968)
T 3dmq_A 155 IPHQLNIAHDVGRRHAPRVL----LADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF 223 (968)
T ss_dssp CHHHHHHHHHHHHSSSCEEE----ECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhcCCCEE----EECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh
Confidence 99999999988843355788 899999999999988776665432 23479999999 99999998886654
Q ss_pred cCCCcEEEEEECCCCHHHHHHH---c--cCcEEECcHHHH------HHHhcCCCCCCCCchhHHHhh
Q psy10677 248 RTMRIRHACLYGGTSKMYQVIL---L--RILTSATNTSLG------IYLQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 248 ~~~~~~~~~~~gg~~~~~~~~~---~--~~ilv~TP~~l~------~~l~~~~~~~~~lde~d~l~~ 303 (317)
++++..+.|+......... + ..|+|+|++.+. ..+....+++.++|||+++-.
T Consensus 224 ---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn 287 (968)
T 3dmq_A 224 ---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVW 287 (968)
T ss_dssp ---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCC
T ss_pred ---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcC
Confidence 4565555443322211111 1 128999999884 346667899999999998754
No 84
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.85 E-value=7.4e-10 Score=104.16 Aligned_cols=115 Identities=25% Similarity=0.310 Sum_probs=96.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCC-chhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYE-KPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~-K~~~L~~ll~--------------------- 58 (317)
+||||+|.++.++++.++.+|..+.+.... ....++.|.+..++..+ |.+.|..++.
T Consensus 215 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~ 293 (410)
T 2j0s_A 215 LISATLPHEILEMTNKFMTDPIRILVKRDE-LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLT 293 (410)
T ss_dssp EEESCCCHHHHTTGGGTCSSCEEECCCGGG-CSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHHcCCCEEEEecCcc-ccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHH
Confidence 589999999999999999999998887666 56778999988887655 7777777664
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||++++ +|++|+.+|||| ++|+|+ .++..+++|+.|... ..++
T Consensus 294 ~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi------~~v~~Vi~~~~p~s~------~~~~ 361 (410)
T 2j0s_A 294 EKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV------PQVSLIINYDLPNNR------ELYI 361 (410)
T ss_dssp HHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCC------TTEEEEEESSCCSSH------HHHH
T ss_pred HHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCc------ccCCEEEEECCCCCH------HHHH
Confidence 9999997 999999999999 999999 889999999988654 6788
Q ss_pred HHHHHHCCceeecC
Q psy10677 115 DSFRKEHNITLIGQ 128 (317)
Q Consensus 115 ~~~~~~~~i~~~g~ 128 (317)
++.++.++.+-.|.
T Consensus 362 Qr~GR~gR~g~~g~ 375 (410)
T 2j0s_A 362 HRIGRSGRYGRKGV 375 (410)
T ss_dssp HHHTTSSGGGCCEE
T ss_pred HhcccccCCCCceE
Confidence 88888777654553
No 85
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.72 E-value=8.9e-09 Score=95.83 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=94.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
++|||+|..++.++..++.+|..+.+..........+.+++..++..+|...|..+++
T Consensus 189 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~ 268 (391)
T 1xti_A 189 MFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQ 268 (391)
T ss_dssp EEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHH
T ss_pred EEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHH
Confidence 4899999999999999999999888776543455788999988888888887777664
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||++++ +|++|+.++||| ++|+|+ .+...+++|+.|... ..+++
T Consensus 269 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi------~~~~~Vi~~~~p~s~------~~~~Q 336 (391)
T 1xti_A 269 LLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDI------ERVNIAFNYDMPEDS------DTYLH 336 (391)
T ss_dssp HHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCC------TTEEEEEESSCCSSH------HHHHH
T ss_pred HHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCc------ccCCEEEEeCCCCCH------HHHHH
Confidence 9999987 999999999999 999999 788999999988644 57777
Q ss_pred HHHHHCCceeec
Q psy10677 116 SFRKEHNITLIG 127 (317)
Q Consensus 116 ~~~~~~~i~~~g 127 (317)
+.+|.++.+-.|
T Consensus 337 r~GR~~R~g~~g 348 (391)
T 1xti_A 337 RVARAGRFGTKG 348 (391)
T ss_dssp HHCBCSSSCCCC
T ss_pred hcccccCCCCce
Confidence 777766654333
No 86
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.72 E-value=2.3e-08 Score=100.07 Aligned_cols=129 Identities=10% Similarity=0.118 Sum_probs=92.0
Q ss_pred Cchhhhhcccccc-------ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN-------FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 240 (317)
Q Consensus 168 t~iQ~~~ip~~l~-------~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~ 240 (317)
.|+|.+++..++. ..+...+ +..++|+|||+..+..+...+...+. ......++||+||+ .|+.|..
T Consensus 57 rpyQ~~gv~~l~~~~~~~~~~~~~g~I----Lad~mGlGKT~~~i~~i~~l~~~~~~-~~p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 57 RPHQREGVKFLWDCVTGRRIENSYGCI----MADEMGLGKTLQCITLIWTLLKQSPD-CKPEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSSSTTCCEEE----ECCCTTSCHHHHHHHHHHHHHHCCTT-SSCSCSCEEEEECH-HHHHHHH
T ss_pred cHHHHHHHHHHHHhhhcccccCCCCeE----eeeCCCchHHHHHHHHHHHHHHhCcc-ccCCCCcEEEEecH-HHHHHHH
Confidence 8999999987641 1556788 89999999999987766655543321 11223469999997 8899999
Q ss_pred HHHHHHhcCCCcEEEEEECCCCHHHHH--HH-c--------cCcEEECcHHHHHH---HhcCCCCCCCCchhHHHhh
Q psy10677 241 AVISIFSRTMRIRHACLYGGTSKMYQV--IL-L--------RILTSATNTSLGIY---LQQNDAHSPCLSVWRRLQD 303 (317)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~gg~~~~~~~--~~-~--------~~ilv~TP~~l~~~---l~~~~~~~~~lde~d~l~~ 303 (317)
+++.++... .+.+..++||....... .. + ..|+|+|++.+... +.....++.++|||+++-.
T Consensus 131 ~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 131 NEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCT
T ss_pred HHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCC
Confidence 999999875 56777777776443221 11 1 23899999988754 3345778899999998743
No 87
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.70 E-value=7.9e-09 Score=96.77 Aligned_cols=120 Identities=19% Similarity=0.248 Sum_probs=94.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC-CCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE-YEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~-~~K~~~L~~ll~--------------------- 58 (317)
++|||++..+..++..++.+|..+.+.... .....+.+.+..+.. .+|...|..++.
T Consensus 205 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 283 (412)
T 3fht_A 205 LFSATFEDSVWKFAQKVVPDPNVIKLKREE-ETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLA 283 (412)
T ss_dssp EEESCCCHHHHHHHHHHSSSCEEECCCGGG-SSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHH
T ss_pred EEEeecCHHHHHHHHHhcCCCeEEeecccc-ccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHH
Confidence 489999999999999999999998887666 567788888887765 346666666553
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|++ +|++|+.+|||| ++|+|+ .+...+++|+.|.......-..+++
T Consensus 284 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi------p~~~~Vi~~~~p~~~~~~~s~~~~~ 357 (412)
T 3fht_A 284 AELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV------EQVSVVINFDLPVDKDGNPDNETYL 357 (412)
T ss_dssp HHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCC------TTEEEEEESSCCBCSSSSBCHHHHH
T ss_pred HHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCc------cCCCEEEEECCCCCCCCCcchheee
Confidence 9999997 999999999999 999999 7899999999885432111225778
Q ss_pred HHHHHHCCceeec
Q psy10677 115 DSFRKEHNITLIG 127 (317)
Q Consensus 115 ~~~~~~~~i~~~g 127 (317)
++.+|.++.+-.|
T Consensus 358 Qr~GR~gR~g~~g 370 (412)
T 3fht_A 358 HRIGRTGRFGKRG 370 (412)
T ss_dssp HHHTTSSCTTCCE
T ss_pred cccCcccCCCCCc
Confidence 8877777654444
No 88
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.69 E-value=5.9e-09 Score=97.79 Aligned_cols=115 Identities=23% Similarity=0.306 Sum_probs=82.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCC-chhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYE-KPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~-K~~~L~~ll~--------------------- 58 (317)
++|||+|..+.++++.++.+|..+.+.... .....+.+.+..++..+ |...|..++.
T Consensus 219 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 297 (414)
T 3eiq_A 219 LLSATMPSDVLEVTKKFMRDPIRILVKKEE-LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLT 297 (414)
T ss_dssp EECSCCCHHHHHHHTTTCSSCEEECCCCCC-CCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHH
T ss_pred EEEEecCHHHHHHHHHHcCCCEEEEecCCc-cCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHH
Confidence 489999999999999999999998887666 56778888888877544 7777776654
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|++ .|++|+.+|||| ++|+|+ .++..+++|+.|... ..++
T Consensus 298 ~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi------p~v~~Vi~~~~p~s~------~~~~ 365 (414)
T 3eiq_A 298 EKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDV------QQVSLVINYDLPTNR------ENYI 365 (414)
T ss_dssp HHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCG------GGCSCEEESSCCSST------HHHH
T ss_pred HHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCc------cCCCEEEEeCCCCCH------HHhh
Confidence 9999997 899999999999 999999 788889999988644 5677
Q ss_pred HHHHHHCCceeecC
Q psy10677 115 DSFRKEHNITLIGQ 128 (317)
Q Consensus 115 ~~~~~~~~i~~~g~ 128 (317)
++.+|.++.+-.|.
T Consensus 366 Qr~GR~gR~g~~g~ 379 (414)
T 3eiq_A 366 HRIGRGGRFGRKGV 379 (414)
T ss_dssp HHSCCC-------C
T ss_pred hhcCcccCCCCCce
Confidence 77666665544443
No 89
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.64 E-value=4.3e-09 Score=104.67 Aligned_cols=120 Identities=13% Similarity=0.041 Sum_probs=78.2
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhH--HHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSV--FTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKT--la~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
++.|.+|++.++ .+++++ ++|++||||| ++++++.+..+.. ..+.++++++||+++|.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~l--~~~~~v----i~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVAL--TRRISV----ISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHH--TBSEEE----EECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHh--cCCCEE----EEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHH
Confidence 789999999999 999999 9999999999 7899998876532 2367999999999999999999888
Q ss_pred HhcCCCcEEEEEECCCCHHHHHHHccCcEEECcHHHH-HHHhc--CCCCCCCCchhHHHhh
Q psy10677 246 FSRTMRIRHACLYGGTSKMYQVILLRILTSATNTSLG-IYLQQ--NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 246 l~~~~~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~-~~l~~--~~~~~~~lde~d~l~~ 303 (317)
+...++++.... .+.+ .+...+..++-.+|+... .+... ...+++++|||+ |++
T Consensus 219 ~~~~l~l~~~~~-~~~~--~~~~Tih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAs-ml~ 275 (608)
T 1w36_D 219 ALRQLPLTDEQK-KRIP--EDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEAS-MID 275 (608)
T ss_dssp HHHHSSCCSCCC-CSCS--CCCBTTTSCC-----------CTTSCCSCSEEEECSGG-GCB
T ss_pred HHhcCCCCHHHH-hccc--hhhhhhHhhhccCCCchHHHhccCCCCCCCEEEEechh-hCC
Confidence 776555432111 1110 011122223434454321 11111 156788999998 665
No 90
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.63 E-value=1.1e-08 Score=95.12 Aligned_cols=116 Identities=22% Similarity=0.266 Sum_probs=25.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCC-chhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYE-KPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~-K~~~L~~ll~--------------------- 58 (317)
++|||+|..+.++...++.+|..+.+.... ....++.+.+..++..+ |...+..+++
T Consensus 198 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~ 276 (394)
T 1fuu_A 198 LLSATMPNDVLEVTTKFMRNPVRILVKKDE-LTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELT 276 (394)
T ss_dssp EECSSCCHHHHHHHHHHCCSCEEEEECC----------------------------------------------------
T ss_pred EEEEecCHHHHHHHHHhcCCCeEEEecCcc-ccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHH
Confidence 479999999999999999999998887665 45567777777666543 6666655553
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||++++ .|++|+.++||| ++|+|+ .+...+++|+.|... .+.+
T Consensus 277 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi------~~~~~Vi~~~~p~s~------~~~~ 344 (394)
T 1fuu_A 277 TKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV------QQVSLVINYDLPANK------ENYI 344 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCc------ccCCEEEEeCCCCCH------HHHH
Confidence 9999986 999999999999 999999 788889999887643 5678
Q ss_pred HHHHHHCCceeecCC
Q psy10677 115 DSFRKEHNITLIGQN 129 (317)
Q Consensus 115 ~~~~~~~~i~~~g~~ 129 (317)
++.+|.++.+-.|..
T Consensus 345 Qr~GR~~R~g~~g~~ 359 (394)
T 1fuu_A 345 HRIGRGGRFGRKGVA 359 (394)
T ss_dssp ---------------
T ss_pred HHcCcccCCCCCceE
Confidence 888877776555544
No 91
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.61 E-value=4e-09 Score=89.04 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=75.3
Q ss_pred CCCcCcEEEEEEccCCCchhhhhhhcc----------------------------------CCCCccc--------eeec
Q psy10677 32 AANPNIKQFVEICHEYEKPAKWWDSNN----------------------------------GHYPKSV--------RFVL 69 (317)
Q Consensus 32 ~~~~~i~q~~~~~~~~~K~~~L~~ll~----------------------------------lhg~~~q--------~F~~ 69 (317)
.++++|+|+|+.|+..+|...|.++++ +||+|++ +|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 567899999999999999999988885 9999987 8999
Q ss_pred Ccccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCCCChh
Q psy10677 70 GTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSY 145 (317)
Q Consensus 70 g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~l~~~ 145 (317)
|+.++||| ++|+|+ .+...+++|+.|... ..++++.++.++.+-.|..+ .+.+-.+...-..
T Consensus 95 g~~~vLvaT~~~~~Gldi------~~~~~VI~~d~p~s~------~~~~Qr~GR~~R~g~~g~~~--~~~~~~~~~~~~~ 160 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDI------SNVKHVINFDLPSDI------EEYVHRIGRTGRVGNLGLAT--SFFNERNINITKD 160 (185)
T ss_dssp TSSSEEEEEC------CC------CSBSEEEESSCCSSH------HHHHHHHTTBCCTTSCEEEE--EEECGGGGGGHHH
T ss_pred CCCeEEEEcChhhcCCCc------ccCCEEEEeCCCCCH------HHHHHHccccCCCCCCcEEE--EEEchhhHHHHHH
Confidence 99999999 999999 788899999988654 67888888777765444332 2233344445555
Q ss_pred hhcccCcCCCC
Q psy10677 146 ILGPMKPKTTN 156 (317)
Q Consensus 146 l~~~l~~~g~~ 156 (317)
+.+.+...+-.
T Consensus 161 l~~~l~~~~~~ 171 (185)
T 2jgn_A 161 LLDLLVEAKQE 171 (185)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHhccCC
Confidence 55555544333
No 92
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.61 E-value=2.3e-08 Score=93.49 Aligned_cols=114 Identities=17% Similarity=0.250 Sum_probs=92.9
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
++|||+|..+.++...++.+|..+.+... ....++.+++..++...|...+..++.
T Consensus 199 ~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~ 276 (400)
T 1s2m_A 199 LFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAK 276 (400)
T ss_dssp EEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHH
Confidence 48999999999999999999988766533 355688999988888888887777664
Q ss_pred -----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHH
Q psy10677 59 -----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 59 -----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~ 115 (317)
+||+|++ .|++|+.+|||| ++|+|+ .+...+++|+.|... ...++
T Consensus 277 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidi------p~~~~Vi~~~~p~s~------~~~~Q 344 (400)
T 1s2m_A 277 KITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDI------QAVNVVINFDFPKTA------ETYLH 344 (400)
T ss_dssp HHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCC------TTEEEEEESSCCSSH------HHHHH
T ss_pred HHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCc------cCCCEEEEeCCCCCH------HHHHH
Confidence 8999987 899999999999 999999 788899999988643 57778
Q ss_pred HHHHHCCceeecC
Q psy10677 116 SFRKEHNITLIGQ 128 (317)
Q Consensus 116 ~~~~~~~i~~~g~ 128 (317)
+.+|.+|.+-.|.
T Consensus 345 r~GR~gR~g~~g~ 357 (400)
T 1s2m_A 345 RIGRSGRFGHLGL 357 (400)
T ss_dssp HHCBSSCTTCCEE
T ss_pred hcchhcCCCCCce
Confidence 8777766654443
No 93
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.60 E-value=8.6e-08 Score=98.28 Aligned_cols=125 Identities=9% Similarity=-0.017 Sum_probs=89.7
Q ss_pred CCCchhhhhcccccc--ccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLN--FQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~--~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.|.|.|.+++..++. ..|++.+ ++.++|+|||+..+..+...+... .....+||+|| ..|+.|..+++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~I----LademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~ 305 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGI----LADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTF 305 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEE----ECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEE----EEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHH
Confidence 449999999964431 2788899 999999999998766655444332 12345899999 67888999999
Q ss_pred HHHhcCCCcEEEEEECCCCHHHHHHHc---------------cCcEEECcHHHHH---HHhcCCCCCCCCchhHHHh
Q psy10677 244 SIFSRTMRIRHACLYGGTSKMYQVILL---------------RILTSATNTSLGI---YLQQNDAHSPCLSVWRRLQ 302 (317)
Q Consensus 244 ~~l~~~~~~~~~~~~gg~~~~~~~~~~---------------~~ilv~TP~~l~~---~l~~~~~~~~~lde~d~l~ 302 (317)
.++.. ++++.+.+|+.......... ..|+|+|++.+.. .+..-...+.++|||+++-
T Consensus 306 ~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 306 EKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLK 380 (800)
T ss_dssp HHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGC
T ss_pred HHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhc
Confidence 99875 46777776665544433221 1289999999975 3444567889999999974
No 94
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.58 E-value=2.2e-08 Score=83.36 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=72.1
Q ss_pred CCcCcEEEEEEccCCCchhhhhhhcc---------------------------------CCCCccc--------eeecCc
Q psy10677 33 ANPNIKQFVEICHEYEKPAKWWDSNN---------------------------------GHYPKSV--------RFVLGT 71 (317)
Q Consensus 33 ~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g~ 71 (317)
+..+|+|+|+.++..+|...|.++++ +||+|++ +|++|.
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 34689999999999999999998885 9999997 999999
Q ss_pred ccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecC
Q psy10677 72 AGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQ 128 (317)
Q Consensus 72 ~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~ 128 (317)
.++||| ++|+|+ .+...+++|+.|... ..++++.++.++.+-.|.
T Consensus 82 ~~vLvaT~~~~~Gldi------~~~~~Vi~~d~p~~~------~~~~qr~GR~~R~g~~g~ 130 (172)
T 1t5i_A 82 RRILVATNLFGRGMDI------ERVNIAFNYDMPEDS------DTYLHRVARAGRFGTKGL 130 (172)
T ss_dssp CSEEEESSCCSTTCCG------GGCSEEEESSCCSSH------HHHHHHHHHHTGGGCCCE
T ss_pred CcEEEECCchhcCcch------hhCCEEEEECCCCCH------HHHHHHhcccccCCCCcE
Confidence 999999 999999 788999999998754 789999999988765554
No 95
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.52 E-value=4.6e-08 Score=90.77 Aligned_cols=120 Identities=19% Similarity=0.253 Sum_probs=92.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC-CCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE-YEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~-~~K~~~L~~ll~--------------------- 58 (317)
++|||++..+..+++.++.++..+.+.... .....+.+.+..+.. ..|...+..++.
T Consensus 182 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~ 260 (395)
T 3pey_A 182 LFSATFADAVRQYAKKIVPNANTLELQTNE-VNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLY 260 (395)
T ss_dssp EEESCCCHHHHHHHHHHSCSCEEECCCGGG-CSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHhCCCCeEEEccccc-cccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHH
Confidence 489999999999999999999888776665 456778888877754 346666655543
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||+|++ +|++|+.+|||| ++|+|+ .+...+++|+.|.......-....+
T Consensus 261 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi------p~~~~Vi~~~~p~~~~~~~s~~~~~ 334 (395)
T 3pey_A 261 GKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI------PTVSMVVNYDLPTLANGQADPATYI 334 (395)
T ss_dssp HHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCC------TTEEEEEESSCCBCTTSSBCHHHHH
T ss_pred HHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCc------ccCCEEEEcCCCCCCcCCCCHHHhh
Confidence 9999997 999999999999 999999 7899999999886321111126778
Q ss_pred HHHHHHCCceeec
Q psy10677 115 DSFRKEHNITLIG 127 (317)
Q Consensus 115 ~~~~~~~~i~~~g 127 (317)
++.+|.++.+-.|
T Consensus 335 Qr~GR~gR~g~~g 347 (395)
T 3pey_A 335 HRIGRTGRFGRKG 347 (395)
T ss_dssp HHHTTSSCTTCCE
T ss_pred HhccccccCCCCc
Confidence 8887777755444
No 96
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.51 E-value=3.2e-08 Score=81.51 Aligned_cols=84 Identities=18% Similarity=0.108 Sum_probs=71.0
Q ss_pred CCCcCcEEEEEEccCCCchhhhhhhcc---------------------------------CCCCccc--------eeecC
Q psy10677 32 AANPNIKQFVEICHEYEKPAKWWDSNN---------------------------------GHYPKSV--------RFVLG 70 (317)
Q Consensus 32 ~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g 70 (317)
....+|+|+|+.++.++|.+.|.++++ +||+|++ +|++|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 356789999999999999999998885 9999997 99999
Q ss_pred cccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeec
Q psy10677 71 TAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 71 ~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
+.++||| ++|+|+ .+...+++|+.|... ..++++.++.++.+-.|
T Consensus 85 ~~~vlv~T~~~~~Gld~------~~~~~Vi~~~~p~~~------~~~~qr~GR~~R~g~~g 133 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDI------ENISLVINYDLPLEK------ESYVHRTGRTGRAGNKG 133 (163)
T ss_dssp SCSEEEECGGGTTTCCC------SCCSEEEESSCCSSH------HHHHHHTTTSSCTTCCE
T ss_pred CCeEEEECChhhcCCch------hcCCEEEEeCCCCCH------HHHHHhccccCcCCCCc
Confidence 9999999 999999 788999999988654 67788877776664444
No 97
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.47 E-value=6.9e-08 Score=95.34 Aligned_cols=117 Identities=22% Similarity=0.208 Sum_probs=87.9
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCC---CCCCcCcEEEEEEccCCC--chhhhhhhcc-----------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSAN---LAANPNIKQFVEICHEYE--KPAKWWDSNN----------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~---~~~~~~i~q~~~~~~~~~--K~~~L~~ll~----------------- 58 (317)
+||||+|+.+++++..++.+|..+.+.... ......+.|.+..++... +...+..+..
T Consensus 218 ~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t 297 (579)
T 3sqw_A 218 LFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPT 297 (579)
T ss_dssp EEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSS
T ss_pred EEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCc
Confidence 589999999999999999999777654321 134567777777666432 1122211110
Q ss_pred -----------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCc
Q psy10677 59 -----------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSV 103 (317)
Q Consensus 59 -----------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~ 103 (317)
+||+|++ +|++|+.+|||| +||+|+ .++..|++|+.|..
T Consensus 298 ~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDi------p~v~~VI~~~~p~s 371 (579)
T 3sqw_A 298 VKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF------PNVHEVLQIGVPSE 371 (579)
T ss_dssp HHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCC------TTCCEEEEESCCSS
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCc------ccCCEEEEcCCCCC
Confidence 8999998 899999999999 999999 78999999998875
Q ss_pred cccCCCCHHHHHHHHHHCCceeecCC
Q psy10677 104 NHLQGKTKEEIDSFRKEHNITLIGQN 129 (317)
Q Consensus 104 ~~i~~~~~~~i~~~~~~~~i~~~g~~ 129 (317)
. +.++++.++.++.+-.|..
T Consensus 372 ~------~~y~Qr~GRagR~g~~g~~ 391 (579)
T 3sqw_A 372 L------ANYIHRIGRTARSGKEGSS 391 (579)
T ss_dssp T------THHHHHHTTSSCTTCCEEE
T ss_pred H------HHhhhhccccccCCCCceE
Confidence 4 6889999988887655543
No 98
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.42 E-value=1.3e-07 Score=86.76 Aligned_cols=110 Identities=23% Similarity=0.228 Sum_probs=88.1
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
++|||+|.++.++++.++.++..+... ...++.+.++.++..+|...|..+++
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~ 257 (367)
T 1hv8_A 183 LFSATMPREILNLAKKYMGDYSFIKAK-----INANIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASM 257 (367)
T ss_dssp EECSSCCHHHHHHHHHHCCSEEEEECC-----SSSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHH
T ss_pred EEeeccCHHHHHHHHHHcCCCeEEEec-----CCCCceEEEEEeChHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHH
Confidence 479999999999999999998776553 23478888888888888888877764
Q ss_pred ----------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHH
Q psy10677 59 ----------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDS 116 (317)
Q Consensus 59 ----------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~ 116 (317)
+||++++ .|++|+.++||| ++|+|+ .+...+++|+.|... .+.+++
T Consensus 258 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~------~~~~~Vi~~~~~~s~------~~~~Q~ 325 (367)
T 1hv8_A 258 LRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDV------NDLNCVINYHLPQNP------ESYMHR 325 (367)
T ss_dssp HHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCC------SCCSEEEESSCCSCH------HHHHHH
T ss_pred HHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCc------ccCCEEEEecCCCCH------HHhhhc
Confidence 8999987 899999999999 899999 788899999887643 566777
Q ss_pred HHHHCCceeec
Q psy10677 117 FRKEHNITLIG 127 (317)
Q Consensus 117 ~~~~~~i~~~g 127 (317)
.+|.++.+-.|
T Consensus 326 ~GR~~R~g~~g 336 (367)
T 1hv8_A 326 IGRTGRAGKKG 336 (367)
T ss_dssp STTTCCSSSCC
T ss_pred ccccccCCCcc
Confidence 66666554333
No 99
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.41 E-value=1.3e-07 Score=92.85 Aligned_cols=117 Identities=22% Similarity=0.214 Sum_probs=86.8
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCC---CCCCcCcEEEEEEccCCC-c-hhhhhhhcc-----------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSAN---LAANPNIKQFVEICHEYE-K-PAKWWDSNN----------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~---~~~~~~i~q~~~~~~~~~-K-~~~L~~ll~----------------- 58 (317)
+||||+|..+++++..++.+|..+.+.... ......+.+.+..++... + ...+..+..
T Consensus 269 ~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s 348 (563)
T 3i5x_A 269 LFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPT 348 (563)
T ss_dssp EEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSC
T ss_pred EEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCc
Confidence 589999999999999999998777654321 134566777776665432 1 111111110
Q ss_pred -----------------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCc
Q psy10677 59 -----------------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSV 103 (317)
Q Consensus 59 -----------------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~ 103 (317)
+||+|++ .|++|+.+|||| ++|+|+ .++..|++|+.|..
T Consensus 349 ~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDi------p~v~~VI~~~~p~s 422 (563)
T 3i5x_A 349 VKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDF------PNVHEVLQIGVPSE 422 (563)
T ss_dssp HHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCC------TTCCEEEEESCCSS
T ss_pred HHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCc------ccCCEEEEECCCCc
Confidence 8999998 999999999999 999999 78999999998875
Q ss_pred cccCCCCHHHHHHHHHHCCceeecCC
Q psy10677 104 NHLQGKTKEEIDSFRKEHNITLIGQN 129 (317)
Q Consensus 104 ~~i~~~~~~~i~~~~~~~~i~~~g~~ 129 (317)
. .+++++.++.++..-.|..
T Consensus 423 ~------~~y~Qr~GRagR~g~~g~~ 442 (563)
T 3i5x_A 423 L------ANYIHRIGRTARSGKEGSS 442 (563)
T ss_dssp T------THHHHHHTTSSCTTCCEEE
T ss_pred h------hhhhhhcCccccCCCCceE
Confidence 4 6889999888887555543
No 100
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.41 E-value=6.5e-08 Score=80.53 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=67.2
Q ss_pred CCcCcEEEEEEccCCC-chhhhhhhcc---------------------------------CCCCccc--------eeecC
Q psy10677 33 ANPNIKQFVEICHEYE-KPAKWWDSNN---------------------------------GHYPKSV--------RFVLG 70 (317)
Q Consensus 33 ~~~~i~q~~~~~~~~~-K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g 70 (317)
+..+|+|+|+.|+..+ |...|..+++ +||+|++ +|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 5678999999999765 9999988885 9999998 99999
Q ss_pred cccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeec
Q psy10677 71 TAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 71 ~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
..++||| ++|+|+ .+...+++|+.|.......-...++++.++.++..-.|
T Consensus 84 ~~~vLvaT~~~~~Gid~------~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g 138 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDV------KQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKG 138 (175)
T ss_dssp SCSEEEECCSCCTTTCC------TTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCE
T ss_pred CCeEEEEecchhcCCCc------ccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCc
Confidence 9999999 999999 78999999998843211122267778777666654334
No 101
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=97.64 E-value=7.7e-08 Score=79.73 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=49.2
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLI 126 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~ 126 (317)
+||+|++ +|++|+.++||| ++|+|+ .+...+++|+.|... ..++++.++.++.+-.
T Consensus 60 ~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~------~~~~~Vi~~~~p~~~------~~~~qr~GR~~R~g~~ 127 (170)
T 2yjt_D 60 LEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDI------PDVSHVFNFDMPRSG------DTYLHRIGRTARAGRK 127 (170)
Confidence 9999987 999999999999 999999 788999999988644 5778888887776555
Q ss_pred cCC
Q psy10677 127 GQN 129 (317)
Q Consensus 127 g~~ 129 (317)
|..
T Consensus 128 g~~ 130 (170)
T 2yjt_D 128 GTA 130 (170)
Confidence 543
No 102
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.24 E-value=3e-07 Score=89.37 Aligned_cols=120 Identities=18% Similarity=0.228 Sum_probs=69.6
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC-CCchhhhhhhcc---------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE-YEKPAKWWDSNN--------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~-~~K~~~L~~ll~--------------------- 58 (317)
++|||++..++.++..++.++..+.+.... .....+.+.+..+.. ..|...+..++.
T Consensus 296 ~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~ 374 (508)
T 3fho_A 296 LFSATFSERVEKYAERFAPNANEIRLKTEE-LSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIA 374 (508)
T ss_dssp EEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHH
T ss_pred EEeCCCCHHHHHHHHHhcCCCeEEEecccc-CCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHH
Confidence 479999999999999999999888776655 455566666666543 335555555443
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHH
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i 114 (317)
+||++++ .|++|+.+|||| ++|+|+ .+...+++|+.|.......-..+.+
T Consensus 375 ~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDi------p~v~~VI~~~~p~~~~~~~s~~~~~ 448 (508)
T 3fho_A 375 RRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDV------SQVNLVVNYDMPLDQAGRPDPQTYL 448 (508)
T ss_dssp HHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCC------TTCCEEEC----CC-----CTHHHH
T ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCc------cCCCEEEEECCCCcccCCCCHHHHH
Confidence 8999986 899999999999 999999 7888899998874331111225566
Q ss_pred HHHHHHCCceeec
Q psy10677 115 DSFRKEHNITLIG 127 (317)
Q Consensus 115 ~~~~~~~~i~~~g 127 (317)
++.+|.+|..-.|
T Consensus 449 Qr~GRagR~g~~g 461 (508)
T 3fho_A 449 HRIGRTGRFGRVG 461 (508)
T ss_dssp HTTSCCC-----C
T ss_pred HHhhhcCCCCCCc
Confidence 6655555543333
No 103
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.24 E-value=9.2e-08 Score=78.83 Aligned_cols=81 Identities=23% Similarity=0.189 Sum_probs=61.3
Q ss_pred cCcEEEEEEccCCC-chhhhhhhcc---------------------------------CCCCccc--------eeecCcc
Q psy10677 35 PNIKQFVEICHEYE-KPAKWWDSNN---------------------------------GHYPKSV--------RFVLGTA 72 (317)
Q Consensus 35 ~~i~q~~~~~~~~~-K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g~~ 72 (317)
++|+|+|+.++.++ |.+.|.++++ +||+|++ .|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 47899999998877 9999988875 9999997 9999999
Q ss_pred cceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeec
Q psy10677 73 GFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIG 127 (317)
Q Consensus 73 ~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g 127 (317)
++||| ++|+|+ .+...+++|+.|... .+++++.++.++.+-.|
T Consensus 82 ~vlv~T~~~~~G~d~------~~~~~Vi~~~~p~~~------~~~~qr~GR~gR~g~~g 128 (165)
T 1fuk_A 82 RILISTDLLARGIDV------QQVSLVINYDLPANK------ENYIHRIGRGGRFGRKG 128 (165)
T ss_dssp SEEEEEGGGTTTCCC------CSCSEEEESSCCSSG------GGGGGSSCSCC-----C
T ss_pred EEEEEcChhhcCCCc------ccCCEEEEeCCCCCH------HHHHHHhcccccCCCCc
Confidence 99999 999999 788899999988643 34555555555443333
No 104
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.23 E-value=3.9e-07 Score=82.74 Aligned_cols=82 Identities=15% Similarity=0.012 Sum_probs=67.0
Q ss_pred CcEEEEEEccCCCchhhhhhhcc---------------------------------CCCCccc--------eeecCcccc
Q psy10677 36 NIKQFVEICHEYEKPAKWWDSNN---------------------------------GHYPKSV--------RFVLGTAGF 74 (317)
Q Consensus 36 ~i~q~~~~~~~~~K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g~~~i 74 (317)
+++|+++.++.++|.++|.++++ +||+|+| .|++|+.+|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 47889999999999999998875 9999998 899999999
Q ss_pred eec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCC
Q psy10677 75 LLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQN 129 (317)
Q Consensus 75 Lva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~ 129 (317)
||| +||+|+ .++..|++|+.|... ..++++.++.++.+-.|..
T Consensus 82 LVaT~va~~Gidi------~~v~~VI~~d~p~s~------~~y~Qr~GRagR~g~~G~~ 128 (300)
T 3i32_A 82 LVATDVAARGLDI------PQVDLVVHYRMPDRA------EAYQHRSGRTGRAGRGGRV 128 (300)
T ss_dssp EEECSTTTCSTTC------CCCSEEEESSCCSST------THHHHHHTCCC-----CEE
T ss_pred EEEechhhcCccc------cceeEEEEcCCCCCH------HHHHHHccCcCcCCCCceE
Confidence 999 999999 788999999998754 6888888877777555543
No 105
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.14 E-value=1.8e-06 Score=78.23 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=81.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCch--hhh---------------------hhhc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKP--AKW---------------------WDSN 57 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~--~~L---------------------~~ll 57 (317)
++|||+|..+.+....++.++..+... ....++.+.++.++...+. ..+ ...+
T Consensus 165 ~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l 240 (337)
T 2z0m_A 165 LFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLF 240 (337)
T ss_dssp EEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTC
T ss_pred EEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHh
Confidence 479999999999999999998777432 2345677777766654321 111 1111
Q ss_pred c----CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHC
Q psy10677 58 N----GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEH 121 (317)
Q Consensus 58 ~----lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~ 121 (317)
. +||++++ +|++|+.++||| ++|+|+ .+...+++|+.|... .+.+++.+|.+
T Consensus 241 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~------~~~~~Vi~~~~~~s~------~~~~Q~~GR~g 308 (337)
T 2z0m_A 241 DNAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDI------PLVEKVINFDAPQDL------RTYIHRIGRTG 308 (337)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCC------CCBSEEEESSCCSSH------HHHHHHHTTBC
T ss_pred hhhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCc------cCCCEEEEecCCCCH------HHhhHhcCccc
Confidence 1 9999987 999999999999 999999 788899999988643 56777777766
Q ss_pred Cceeec
Q psy10677 122 NITLIG 127 (317)
Q Consensus 122 ~i~~~g 127 (317)
+.+-.|
T Consensus 309 R~g~~g 314 (337)
T 2z0m_A 309 RMGRKG 314 (337)
T ss_dssp GGGCCE
T ss_pred cCCCCc
Confidence 654444
No 106
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.12 E-value=9.9e-07 Score=75.80 Aligned_cols=82 Identities=15% Similarity=0.005 Sum_probs=64.4
Q ss_pred CcEEEEEEccCCCchhhhhhhcc---------------------------------CCCCccc--------eeecCcccc
Q psy10677 36 NIKQFVEICHEYEKPAKWWDSNN---------------------------------GHYPKSV--------RFVLGTAGF 74 (317)
Q Consensus 36 ~i~q~~~~~~~~~K~~~L~~ll~---------------------------------lhg~~~q--------~F~~g~~~i 74 (317)
.+++.++.++.++|.+.|.+++. +||+|++ .|++|..+|
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 34566666666677777776664 9999998 999999999
Q ss_pred eec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCC
Q psy10677 75 LLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQN 129 (317)
Q Consensus 75 Lva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~ 129 (317)
||| +||+|+ .++..|++|+.|... ..++++.++.++.+-.|..
T Consensus 85 lvaT~~~~~Gidi------~~v~~Vi~~~~p~~~------~~~~qr~GR~gR~g~~g~~ 131 (212)
T 3eaq_A 85 LVATDVAARGLDI------PQVDLVVHYRLPDRA------EAYQHRSGRTGRAGRGGRV 131 (212)
T ss_dssp EEECTTTTCSSSC------CCBSEEEESSCCSSH------HHHHHHHTTBCCCC--BEE
T ss_pred EEecChhhcCCCC------ccCcEEEECCCCcCH------HHHHHHhcccCCCCCCCeE
Confidence 999 999999 789999999998754 6888888888777655543
No 107
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.07 E-value=1.5e-07 Score=95.29 Aligned_cols=90 Identities=3% Similarity=-0.053 Sum_probs=61.1
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCC--cccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKT--SVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~--d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
|||++.| +|+.| .|+|| |||+||++.+.-. +..+|++|+.|... +.++|+.+++.+.+
T Consensus 462 Lhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~------r~y~hr~GRTGRqG 533 (844)
T 1tf5_A 462 LNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESR------RIDNQLRGRSGRQG 533 (844)
T ss_dssp ECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSH------HHHHHHHTTSSGGG
T ss_pred eeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCH------HHHHhhcCccccCC
Confidence 9999887 45555 68999 9999996543222 56789999999876 78999999999888
Q ss_pred eecCCCCCCcccccCCCC----ChhhhcccCcCCCCCC
Q psy10677 125 LIGQNIPKPVKTLDETNI----PSYILGPMKPKTTNNE 158 (317)
Q Consensus 125 ~~g~~~~~~~~~f~~~~l----~~~l~~~l~~~g~~~p 158 (317)
-.|..+ .+.+.+|-.+ ...+...+...|....
T Consensus 534 ~~G~s~--~~vs~eD~l~r~f~~~~~~~~~~~~~~~~~ 569 (844)
T 1tf5_A 534 DPGITQ--FYLSMEDELMRRFGAERTMAMLDRFGMDDS 569 (844)
T ss_dssp CCEEEE--EEEETTSSGGGSSHHHHHHHHHHHHTCCSS
T ss_pred CCCeEE--EEecHHHHHHHHHhHHHHHHHHHhcCCCCc
Confidence 888654 3444454211 2234444444455443
No 108
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.99 E-value=4.1e-06 Score=82.90 Aligned_cols=113 Identities=10% Similarity=-0.039 Sum_probs=76.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccC--CCchhhhhhhcc--------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHE--YEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~--~~K~~~L~~ll~-------------------- 58 (317)
+||||++..+++.+..++..+..+.+.... ...++...+...+. .++...|..++.
T Consensus 205 ~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~--~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~ 282 (591)
T 2v1x_A 205 GLTATATNHVLTDAQKILCIEKCFTFTASF--NRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQ 282 (591)
T ss_dssp EEESSCCHHHHHHHHHHTTCCSCEEEECCC--CCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHH
T ss_pred EEecCCCHHHHHHHHHHhCCCCcEEEecCC--CCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHH
Confidence 489999999999988888754333222221 22344433322221 112333333331
Q ss_pred --------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHH
Q psy10677 59 --------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKE 112 (317)
Q Consensus 59 --------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~ 112 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..|++|++|... ++
T Consensus 283 la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~------p~V~~VI~~~~p~s~------~~ 350 (591)
T 2v1x_A 283 VTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDK------PDVRFVIHHSMSKSM------EN 350 (591)
T ss_dssp HHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCC------SCEEEEEESSCCSSH------HH
T ss_pred HHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCc------ccccEEEEeCCCCCH------HH
Confidence 9999997 999999999999 999999 899999999998754 67
Q ss_pred HHHHHHHHCCceeec
Q psy10677 113 EIDSFRKEHNITLIG 127 (317)
Q Consensus 113 ~i~~~~~~~~i~~~g 127 (317)
++++.++.++.+..|
T Consensus 351 y~Qr~GRaGR~G~~g 365 (591)
T 2v1x_A 351 YYQESGRAGRDDMKA 365 (591)
T ss_dssp HHHHHTTSCTTSSCE
T ss_pred HHHHhccCCcCCCCc
Confidence 888887777654333
No 109
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=97.94 E-value=7.9e-07 Score=89.98 Aligned_cols=107 Identities=7% Similarity=-0.028 Sum_probs=73.8
Q ss_pred EEccCCCchhhhhhhcc-----------------------------------CCCCccc--------eeecCcccceec-
Q psy10677 42 EICHEYEKPAKWWDSNN-----------------------------------GHYPKSV--------RFVLGTAGFLLS- 77 (317)
Q Consensus 42 ~~~~~~~K~~~L~~ll~-----------------------------------lhg~~~q--------~F~~g~~~iLva- 77 (317)
+++..++|.++|.+.+. |||++.+ +|+.| .|+||
T Consensus 419 v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIAT 496 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIAT 496 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEec
Confidence 55666778888887663 9999877 78888 69999
Q ss_pred ---ccccCCcCCCC--------C------------------Ccc-----cccCCCCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 78 ---AVSFSLPFRDD--------K------------------TSV-----VTVPSYPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 78 ---arg~~~~lr~~--------~------------------~d~-----~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
+||+||++... + ..+ .+|++|+.|... ..++++.+++.+.
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~------riy~qr~GRTGRq 570 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESR------RIDNQLRGRSGRQ 570 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSH------HHHHHHHTTSSGG
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCH------HHHHhhccccccC
Confidence 99999954210 0 012 589999999765 7889999999888
Q ss_pred eeecCCCCCCcccccCCCC----ChhhhcccCcCCCCCC
Q psy10677 124 TLIGQNIPKPVKTLDETNI----PSYILGPMKPKTTNNE 158 (317)
Q Consensus 124 ~~~g~~~~~~~~~f~~~~l----~~~l~~~l~~~g~~~p 158 (317)
+-.|... .+.+.+|-.+ +..+...+...|....
T Consensus 571 Gd~G~s~--~fls~eD~l~r~f~~~~~~~~~~~~~~~~~ 607 (853)
T 2fsf_A 571 GDAGSSR--FYLSMEDALMRIFASDRVSGMMRKLGMKPG 607 (853)
T ss_dssp GCCEEEE--EEEETTSGGGGTTCCHHHHTTGGGGCCCTT
T ss_pred CCCeeEE--EEecccHHHHHHhhHHHHHHHHHhhCCCCc
Confidence 8777654 3444444211 4555555666666544
No 110
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.71 E-value=2.2e-06 Score=90.31 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=68.4
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc----------------------
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+||||++.. +.++..++.++..+.+.... ....++.|.++ ..+|...|..+++
T Consensus 220 l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~~L~~ll~~~~~~~LVF~~t~~~a~~l~~~ 294 (1054)
T 1gku_B 220 LMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESISTLSSILEKLGTGGIIYARTGEEAEEIYES 294 (1054)
T ss_dssp EEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTTTTHHHHTTSCSCEEEEESSHHHHHHHHHT
T ss_pred EEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHHHHHHHHhhcCCCEEEEEcCHHHHHHHHHH
Confidence 589999998 77777777776666665554 45567887765 3455566655553
Q ss_pred ---------CCCCccc---eeecCcccceec--------ccccCCcCCCCCCcc-cccCCCCCC
Q psy10677 59 ---------GHYPKSV---RFVLGTAGFLLS--------AVSFSLPFRDDKTSV-VTVPSYPDP 101 (317)
Q Consensus 59 ---------lhg~~~q---~F~~g~~~iLva--------arg~~~~lr~~~~d~-~~v~nf~~p 101 (317)
+||+|++ +|++|+.+|||| +||+|+ .++ ..|++|+.|
T Consensus 295 L~~~~~v~~lhg~~~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDi------p~VI~~VI~~~~P 352 (1054)
T 1gku_B 295 LKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDL------PERIRFAVFVGCP 352 (1054)
T ss_dssp TTTSSCEEECTTSSSHHHHHHHHTSCSEEEEECC------CCSCC------TTTCCEEEEESCC
T ss_pred HhhccCeeEEeccHHHHHHHHHcCCCcEEEEecCCCCeeEecccc------CCcccEEEEeCCC
Confidence 8999987 999999999996 799999 784 889999988
No 111
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.63 E-value=4.1e-05 Score=74.62 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=74.5
Q ss_pred CcccCCChHHHHHHHHh--cCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc--------------------
Q psy10677 1 MWSATWPREIQKLAKEF--LSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~--l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~-------------------- 58 (317)
++|||.+..+.+-.... +.+|..+ +.... ..++.. ..++..++...|.+++.
T Consensus 179 ~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~---r~~l~~--~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l 252 (523)
T 1oyw_A 179 ALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD---RPNIRY--MLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDT 252 (523)
T ss_dssp EEESCCCHHHHHHHHHHHTCCSCEEE-ECCCC---CTTEEE--EEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHhCCCCCeEE-eCCCC---CCceEE--EEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHH
Confidence 47999999876544333 3566543 32221 234432 33344455555555543
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEE 113 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~ 113 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..|++|+.|... +++
T Consensus 253 ~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~------p~v~~VI~~~~p~s~------~~y 320 (523)
T 1oyw_A 253 AARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK------PNVRFVVHFDIPRNI------ESY 320 (523)
T ss_dssp HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCC------TTCCEEEESSCCSSH------HHH
T ss_pred HHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCc------cCccEEEEECCCCCH------HHH
Confidence 9999997 999999999999 999999 889999999988754 677
Q ss_pred HHHHHHHCCceeec
Q psy10677 114 IDSFRKEHNITLIG 127 (317)
Q Consensus 114 i~~~~~~~~i~~~g 127 (317)
+++.++.++.+-.|
T Consensus 321 ~Qr~GRaGR~g~~~ 334 (523)
T 1oyw_A 321 YQETGRAGRDGLPA 334 (523)
T ss_dssp HHHHTTSCTTSSCE
T ss_pred HHHhccccCCCCCc
Confidence 78777776654333
No 112
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.58 E-value=1.3e-05 Score=80.01 Aligned_cols=143 Identities=8% Similarity=-0.062 Sum_probs=96.1
Q ss_pred cccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEE-EEEEccCCCchhhhhhhcc----------------------
Q psy10677 2 WSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQ-FVEICHEYEKPAKWWDSNN---------------------- 58 (317)
Q Consensus 2 FSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q-~~~~~~~~~K~~~L~~ll~---------------------- 58 (317)
+|+|...+.+++.+.|--+ .+.+. .+ .....+.+ ..+++...+|..++...+.
T Consensus 415 MTGTa~te~~Ef~~iY~l~--vv~IP-tn-kp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~L 490 (822)
T 3jux_A 415 MTGTAKTEESEFVQVYGME--VVVIP-TH-KPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELL 490 (822)
T ss_dssp EESSCGGGHHHHHHHSCCC--EEECC-CS-SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHH
T ss_pred ECCCCchHHHHHHHHhCCe--EEEEC-CC-CCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHH
Confidence 5899999999998887433 34443 33 33344554 3456677778888877664
Q ss_pred -------------CCCCccc--------eeecCcccceec----ccccCCcCCCCCC--cccccCCCCCCCccccCCCCH
Q psy10677 59 -------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKT--SVVTVPSYPDPSVNHLQGKTK 111 (317)
Q Consensus 59 -------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~--d~~~v~nf~~p~~~~i~~~~~ 111 (317)
|||+..+ .|+.| .|+|| +||+||++...-. +..+|++|+.|... .
T Consensus 491 s~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~------r 562 (822)
T 3jux_A 491 SSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESR------R 562 (822)
T ss_dssp HHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSH------H
T ss_pred HHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCH------H
Confidence 8998666 44445 69999 9999997644322 55689999999866 7
Q ss_pred HHHHHHHHHCCceeecCCCCCCcccccCC----CCChhhhcccCcCCCCCC
Q psy10677 112 EEIDSFRKEHNITLIGQNIPKPVKTLDET----NIPSYILGPMKPKTTNNE 158 (317)
Q Consensus 112 ~~i~~~~~~~~i~~~g~~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~p 158 (317)
.++++.+++.+.+-.|..+ .+.+.+|- .-+..+...+...|...-
T Consensus 563 ~y~qriGRTGRqG~~G~a~--~fvsleD~l~r~fg~~~~~~~m~~~~~~~~ 611 (822)
T 3jux_A 563 IDNQLRGRAGRQGDPGESI--FFLSLEDDLLRIFGSEQIGKVMNILKIEEG 611 (822)
T ss_dssp HHHHHHTTSSCSSCCCEEE--EEEETTSHHHHHTTHHHHHHHHHHSSCCSS
T ss_pred HHHHhhCccccCCCCeeEE--EEechhHHHHHhhhHHHHHHHHHHcCCCCC
Confidence 8999999999888888654 34444441 123455555555666544
No 113
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.50 E-value=2.6e-05 Score=73.20 Aligned_cols=104 Identities=20% Similarity=0.196 Sum_probs=73.3
Q ss_pred CcccC-CChHHH-HHHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc--------------------
Q psy10677 1 MWSAT-WPREIQ-KLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT-~~~~v~-~l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~-------------------- 58 (317)
+|||| +|+.+. .+.+.++. +.+.... ....++.|.++.++ |.+.|..+++
T Consensus 198 ~~SAT~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i~~~~~~~~---~~~~l~~~l~~~~~~~lVF~~~~~~~~~l~ 269 (414)
T 3oiy_A 198 VSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISSR---SKEKLVELLEIFRDGILIFAQTEEEGKELY 269 (414)
T ss_dssp ESSCCSSCCSSTTHHHHHHHS----CCSSCCC-CCCCSEEEEEESSC---CHHHHHHHHHHHCSSEEEEESSHHHHHHHH
T ss_pred EEecCCCcchhHHHHHHHhhc----cCcCccc-cccccchheeeccC---HHHHHHHHHHHcCCCEEEEECCHHHHHHHH
Confidence 58999 787766 44444443 2333333 45677888877663 4455554443
Q ss_pred -------------CCCCccc--eeecCcccceec--------ccccCCcCCCCCCc-ccccCCCCCC--CccccCCCCHH
Q psy10677 59 -------------GHYPKSV--RFVLGTAGFLLS--------AVSFSLPFRDDKTS-VVTVPSYPDP--SVNHLQGKTKE 112 (317)
Q Consensus 59 -------------lhg~~~q--~F~~g~~~iLva--------arg~~~~lr~~~~d-~~~v~nf~~p--~~~~i~~~~~~ 112 (317)
+||+..+ +|++|+.+|||| +||+|+ .+ +..|++|+.| ... ..
T Consensus 270 ~~L~~~~~~~~~~~h~~~r~~~~f~~g~~~vLvat~s~T~~~~~GiDi------p~~v~~VI~~~~p~~~~~------~~ 337 (414)
T 3oiy_A 270 EYLKRFKFNVGETWSEFEKNFEDFKVGKINILIGVQAYYGKLTRGVDL------PERIKYVIFWGTPSGPDV------YT 337 (414)
T ss_dssp HHHHHTTCCEEESSSCHHHHHHHHHTTSCSEEEEECCTTCCCCCCCCC------TTTCCEEEEESCCTTTCH------HH
T ss_pred HHHHHcCCceehhhcCcchHHHHHhCCCCeEEEEecCcCchhhccCcc------ccccCEEEEECCCCCCCH------HH
Confidence 6775322 899999999997 899999 78 8999999999 433 68
Q ss_pred HHHHHHHHCCce
Q psy10677 113 EIDSFRKEHNIT 124 (317)
Q Consensus 113 ~i~~~~~~~~i~ 124 (317)
++++.++.++.+
T Consensus 338 y~qr~GR~gR~g 349 (414)
T 3oiy_A 338 YIQASGRSSRIL 349 (414)
T ss_dssp HHHHHGGGCCEE
T ss_pred HHHHhCccccCC
Confidence 899998888775
No 114
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.33 E-value=4e-05 Score=80.96 Aligned_cols=88 Identities=23% Similarity=0.251 Sum_probs=63.5
Q ss_pred CcccC-CChHHHH-HHHHhcCCCEEEEEcCCCCCCCcCcEEEEEEccCCCchhhhhhhcc--------------------
Q psy10677 1 MWSAT-WPREIQK-LAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWDSNN-------------------- 58 (317)
Q Consensus 1 lFSAT-~~~~v~~-l~~~~l~~p~~i~v~~~~~~~~~~i~q~~~~~~~~~K~~~L~~ll~-------------------- 58 (317)
+|||| .|+.++. +.+.++. +.+.... ....++.|.++.+ +|...|.++++
T Consensus 255 l~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~---~k~~~L~~ll~~~~~~~LVF~~s~~~a~~l~ 326 (1104)
T 4ddu_A 255 VSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS---RSKEKLVELLEIFRDGILIFAQTEEEGKELY 326 (1104)
T ss_dssp EECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC---CCHHHHHHHHHHHCSSEEEEESSSHHHHHHH
T ss_pred EEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec---CHHHHHHHHHHhcCCCEEEEECcHHHHHHHH
Confidence 58999 7877763 3344333 4455444 4667888888776 35555555553
Q ss_pred -------------CCCCccc--eeecCcccceec--------ccccCCcCCCCCCc-ccccCCCCCCC
Q psy10677 59 -------------GHYPKSV--RFVLGTAGFLLS--------AVSFSLPFRDDKTS-VVTVPSYPDPS 102 (317)
Q Consensus 59 -------------lhg~~~q--~F~~g~~~iLva--------arg~~~~lr~~~~d-~~~v~nf~~p~ 102 (317)
+||+..+ +|++|+.+|||| +||+|+ .+ +..|++|++|.
T Consensus 327 ~~L~~~g~~~~~~lhg~rr~l~~F~~G~~~VLVatas~TdvlarGIDi------p~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 327 EYLKRFKFNVGETWSEFEKNFEDFKVGKINILIGVQAYYGKLTRGVDL------PERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHHHTTCCEEESSSSHHHHHHHHHHTSCSEEEEETTTHHHHCCSCCC------TTTCCEEEEESCCE
T ss_pred HHHHhCCCCeeeEecCcHHHHHHHHCCCCCEEEEecCCCCeeEecCcC------CCCCCEEEEECCCC
Confidence 6774322 899999999998 899999 88 89999999997
No 115
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.32 E-value=2.9e-05 Score=74.16 Aligned_cols=109 Identities=8% Similarity=-0.068 Sum_probs=73.0
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCC-C----C----CcCcEEEEEEccCCCchhhhhhhcc--------CCCCc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANL-A----A----NPNIKQFVEICHEYEKPAKWWDSNN--------GHYPK 63 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~-~----~----~~~i~q~~~~~~~~~K~~~L~~ll~--------lhg~~ 63 (317)
+||||+|.++..+ +..++..+.+...-. . . ...-.+.+++|+..+..+.+...|+ +||++
T Consensus 146 ~~SAT~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~ 222 (451)
T 2jlq_A 146 FMTATPPGSTDPF---PQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT 222 (451)
T ss_dssp EECSSCTTCCCSS---CCCSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT
T ss_pred EEccCCCccchhh---hcCCCceEecCccCCchhhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH
Confidence 5899999876543 345665555432110 0 0 0011356778887766666666664 99998
Q ss_pred cc----eeecCcccceec----ccccCCcCCCCCCcccccCCCC--------------------CCCccccCCCCHHHHH
Q psy10677 64 SV----RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYP--------------------DPSVNHLQGKTKEEID 115 (317)
Q Consensus 64 ~q----~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~--------------------~p~~~~i~~~~~~~i~ 115 (317)
.+ +|++|+.+|||| +||+|+ .+ ..|++|+ .|.. ..++++
T Consensus 223 ~~~~~~~f~~g~~~vLVaT~v~~~GiDi------p~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s------~~~y~Q 289 (451)
T 2jlq_A 223 FDTEYPKTKLTDWDFVVTTDISEMGANF------RA-GRVIDPRRCLKPVILTDGPERVILAGPIPVT------PASAAQ 289 (451)
T ss_dssp HHHHGGGGGSSCCSEEEECGGGGSSCCC------CC-SEEEECCEEEEEEEECSSSCEEEEEEEEECC------HHHHHH
T ss_pred HHHHHHhhccCCceEEEECCHHHhCcCC------CC-CEEEECCCcccccccccccceeeecccccCC------HHHHHH
Confidence 87 999999999999 999999 56 7777776 3322 257888
Q ss_pred HHHHHCCcee
Q psy10677 116 SFRKEHNITL 125 (317)
Q Consensus 116 ~~~~~~~i~~ 125 (317)
+.++.++..-
T Consensus 290 r~GRaGR~g~ 299 (451)
T 2jlq_A 290 RRGRIGRNPA 299 (451)
T ss_dssp HHTTSSCCTT
T ss_pred hccccCCCCC
Confidence 8887776643
No 116
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.11 E-value=0.00011 Score=73.65 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=58.3
Q ss_pred EEEEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS 97 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n 97 (317)
.+.+++|......+.|...|. +||+++| +|++|+++|||| +||+|+ .++..+++
T Consensus 446 ~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDi------p~v~lVi~ 519 (661)
T 2d7d_A 446 ERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDI------PEVSLVAI 519 (661)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCC------TTEEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCccc------CCCCEEEE
Confidence 356667776666666666664 8999987 799999999998 999999 78888988
Q ss_pred CCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 98 YPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 98 f~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
++.+.... ..-...++++.++.++.
T Consensus 520 ~d~d~~G~-p~s~~~~iQr~GRagR~ 544 (661)
T 2d7d_A 520 LDADKEGF-LRSERSLIQTIGRAARN 544 (661)
T ss_dssp TTTTCCTT-TTSHHHHHHHHHTTTTS
T ss_pred eCcccccC-CCCHHHHHHHhCcccCC
Confidence 88632110 00126789999988875
No 117
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.05 E-value=5.9e-05 Score=72.23 Aligned_cols=109 Identities=10% Similarity=0.007 Sum_probs=67.1
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCC-CC-------cCcEEEEEEccCCCchhhhhhhcc--------CCCCcc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLA-AN-------PNIKQFVEICHEYEKPAKWWDSNN--------GHYPKS 64 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~-~~-------~~i~q~~~~~~~~~K~~~L~~ll~--------lhg~~~ 64 (317)
+||||+|.++..++.. +.|+.+........ .. ..-.+..++|+..+..+.+...|+ +||+.-
T Consensus 148 l~SAT~~~~~~~~~~~--~~pi~~~~~~~~~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R 225 (459)
T 2z83_A 148 FMTATPPGTTDPFPDS--NAPIHDLQDEIPDRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSY 225 (459)
T ss_dssp EECSSCTTCCCSSCCC--SSCEEEEECCCCSSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCC
T ss_pred EEEcCCCcchhhhccC--CCCeEEecccCCcchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHH
Confidence 5899999887655432 45654321111000 00 012356778887766666666664 999744
Q ss_pred c----eeecCcccceec----ccccCCcCCCCCCcccccCC--------------------CCCCCccccCCCCHHHHHH
Q psy10677 65 V----RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS--------------------YPDPSVNHLQGKTKEEIDS 116 (317)
Q Consensus 65 q----~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n--------------------f~~p~~~~i~~~~~~~i~~ 116 (317)
+ +|++|+.+|||| ++|+|+ .+ ..|++ |+.|... .+++++
T Consensus 226 ~~~~~~f~~g~~~iLVaT~v~~~GiDi------p~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~------~~~~QR 292 (459)
T 2z83_A 226 DTEYPKCKNGDWDFVITTDISEMGANF------GA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITS------ASAAQR 292 (459)
T ss_dssp CCCGGGSSSCCCSEEEESSCC---CCC------SC-SEEEECCEECCEEEECSSSCEEEECSCEECCH------HHHHHH
T ss_pred HHHHhhccCCCceEEEECChHHhCeec------CC-CEEEECCcccccccccccccccccccCCCCCH------HHHHHh
Confidence 3 999999999999 999999 44 55555 4444433 678888
Q ss_pred HHHHCCce
Q psy10677 117 FRKEHNIT 124 (317)
Q Consensus 117 ~~~~~~i~ 124 (317)
.++.++..
T Consensus 293 ~GRaGR~g 300 (459)
T 2z83_A 293 RGRVGRNP 300 (459)
T ss_dssp HTTSSCCT
T ss_pred ccccCCCC
Confidence 88877664
No 118
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.99 E-value=9e-05 Score=73.91 Aligned_cols=84 Identities=11% Similarity=0.021 Sum_probs=58.1
Q ss_pred EEEEEEccCCCchhhhhhhcc--------CCCCccc-eeecCcccceec----ccccCCcCCCCC---CcccccCCCC--
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------GHYPKSV-RFVLGTAGFLLS----AVSFSLPFRDDK---TSVVTVPSYP-- 99 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------lhg~~~q-~F~~g~~~iLva----arg~~~~lr~~~---~d~~~v~nf~-- 99 (317)
.+.+++|+..+..+.+...|+ +||+|+| +|+++..+|||| +||+|++.+-+. ....++.||+
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er~~~~~~VLVATdVaerGIDIdV~~VI~~Gl~~~~ViNyDyd 476 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLD 476 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGSCSSSCEEEEECTTHHHHCCCCBSEEEECCEEEEEEEECCCS
T ss_pred CcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHhCCCcEEEECChHHccCCCCCcEEEecCcccccccccccc
Confidence 456778887777777777664 9999999 777777899999 999998322111 1223455777
Q ss_pred ---------CCCccccCCCCHHHHHHHHHHCCceeecC
Q psy10677 100 ---------DPSVNHLQGKTKEEIDSFRKEHNITLIGQ 128 (317)
Q Consensus 100 ---------~p~~~~i~~~~~~~i~~~~~~~~i~~~g~ 128 (317)
.|... ++++++.+|.++ ...|.
T Consensus 477 P~~gl~~~~~P~s~------~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 477 PTFTIETTTVPQDA------VSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp SSCEEEEEEEECBH------HHHHHHHTTBCS-SSCEE
T ss_pred cccccccccCcCCH------HHHHHHhccCCC-CCCCE
Confidence 44433 688888888877 44553
No 119
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.90 E-value=0.0013 Score=65.51 Aligned_cols=68 Identities=13% Similarity=0.151 Sum_probs=52.6
Q ss_pred CCCCchhhhhccccccccCcC-cccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 165 KKCGDKESKNWTIPLNFQAKK-FISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 165 ~~~t~iQ~~~ip~~l~~~g~d-vi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
..|++-|.+|+-.++ ..++ .+ +.||+|||||.+.. -++.++.+. +.+.|+.+||..-|.++.+.+
T Consensus 188 ~~LN~~Q~~AV~~al--~~~~~~l----I~GPPGTGKT~ti~-~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL 253 (646)
T 4b3f_X 188 TCLDTSQKEAVLFAL--SQKELAI----IHGPPGTGKTTTVV-EIILQAVKQ-------GLKVLCCAPSNIAVDNLVERL 253 (646)
T ss_dssp TTCCHHHHHHHHHHH--HCSSEEE----EECCTTSCHHHHHH-HHHHHHHHT-------TCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh--cCCCceE----EECCCCCCHHHHHH-HHHHHHHhC-------CCeEEEEcCchHHHHHHHHHH
Confidence 467999999999988 6665 45 78999999998754 344445442 568999999999999888776
Q ss_pred HHH
Q psy10677 244 SIF 246 (317)
Q Consensus 244 ~~l 246 (317)
...
T Consensus 254 ~~~ 256 (646)
T 4b3f_X 254 ALC 256 (646)
T ss_dssp HHT
T ss_pred Hhc
Confidence 554
No 120
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.87 E-value=6.4e-05 Score=74.71 Aligned_cols=115 Identities=8% Similarity=-0.036 Sum_probs=73.2
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCC----CC-CCC----cCcEEEEEEccCCCchhhhhhhcc--------CCCCc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSA----NL-AAN----PNIKQFVEICHEYEKPAKWWDSNN--------GHYPK 63 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~----~~-~~~----~~i~q~~~~~~~~~K~~~L~~ll~--------lhg~~ 63 (317)
+||||+|..+++++. .+|..+.+... .. ... ..-.+.+++|+..+..+.+...|+ +||+.
T Consensus 313 l~SAT~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~ll~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 389 (618)
T 2whx_A 313 FMTATPPGSTDPFPQ---SNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT 389 (618)
T ss_dssp EECSSCTTCCCSSCC---CSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTT
T ss_pred EEECCCchhhhhhhc---cCCceeeecccCCHHHHHHHHHHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChHH
Confidence 589999998775544 35655555431 10 000 112356778887777777766664 99974
Q ss_pred cc----eeecCcccceec----ccccCCcCCCC-------------CCcccccCCCCCCCccccCCCCHHHHHHHHHHCC
Q psy10677 64 SV----RFVLGTAGFLLS----AVSFSLPFRDD-------------KTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHN 122 (317)
Q Consensus 64 ~q----~F~~g~~~iLva----arg~~~~lr~~-------------~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~ 122 (317)
.+ +|++|+.+|||| +||+|++..-+ +.+...+++|+.|... ++++++.++..+
T Consensus 390 R~~~l~~F~~g~~~VLVaTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~------~~yiQR~GRaGR 463 (618)
T 2whx_A 390 FDTEYPKTKLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTP------ASAAQRRGRIGR 463 (618)
T ss_dssp HHHHTTHHHHSCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCH------HHHHHHHTTSSC
T ss_pred HHHHHHhhcCCCcEEEEECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCH------HHHHHhccccCC
Confidence 43 999999999999 99999942211 1111123555555543 688999888887
Q ss_pred ce
Q psy10677 123 IT 124 (317)
Q Consensus 123 i~ 124 (317)
..
T Consensus 464 ~g 465 (618)
T 2whx_A 464 NP 465 (618)
T ss_dssp CT
T ss_pred CC
Confidence 73
No 121
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.84 E-value=0.0004 Score=73.76 Aligned_cols=93 Identities=14% Similarity=0.013 Sum_probs=63.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcCCCCCCC---------------------cCcEEEEEEccCCCchhhhhhhcc-
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANLAAN---------------------PNIKQFVEICHEYEKPAKWWDSNN- 58 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~---------------------~~i~q~~~~~~~~~K~~~L~~ll~- 58 (317)
++|||.++....++...+.++..|...+.. ... ..-.|.+++|+..+..+.+...|+
T Consensus 756 ~lSATp~p~~l~~~~~~~~~~~~i~~~~~~-r~~i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~ 834 (1151)
T 2eyq_A 756 TLTATPIPRTLNMAMSGMRDLSIIATPPAR-RLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 834 (1151)
T ss_dssp EEESSCCCHHHHHHHTTTSEEEECCCCCCB-CBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHH
T ss_pred EEcCCCChhhHHHHHhcCCCceEEecCCCC-ccccEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH
Confidence 489998888888888777766544332211 000 011455666766555554444442
Q ss_pred ---------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCC
Q psy10677 59 ---------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPD 100 (317)
Q Consensus 59 ---------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~ 100 (317)
+||+|++ +|++|+.+|||| ++|+|+ .+...++.++.
T Consensus 835 ~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi------p~v~~VIi~~~ 891 (1151)
T 2eyq_A 835 LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI------PTANTIIIERA 891 (1151)
T ss_dssp HCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC------TTEEEEEETTT
T ss_pred hCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc------cCCcEEEEeCC
Confidence 9999997 899999999999 999999 77887776654
No 122
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.79 E-value=0.0022 Score=64.20 Aligned_cols=67 Identities=18% Similarity=0.087 Sum_probs=50.0
Q ss_pred Cchhhhhcccccc--ccCc-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN--FQAK-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
++.|.+++..+.. ..|. ... +.+.||||||+++.- ++.++. . .+|||+|+..+|.|.++.++
T Consensus 10 ~~~q~~ai~~l~~~~~~~~~~~~----l~g~tgs~kt~~~a~-~~~~~~---------~-~~lvv~~~~~~A~ql~~el~ 74 (664)
T 1c4o_A 10 KGDQPKAIAGLVEALRDGERFVT----LLGATGTGKTVTMAK-VIEALG---------R-PALVLAPNKILAAQLAAEFR 74 (664)
T ss_dssp CTTHHHHHHHHHHHHHTTCSEEE----EEECTTSCHHHHHHH-HHHHHT---------C-CEEEEESSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhcCCCcEE----EEcCCCcHHHHHHHH-HHHHhC---------C-CEEEEecCHHHHHHHHHHHH
Confidence 9999999887652 1232 355 789999999987642 333331 2 38999999999999999999
Q ss_pred HHhcC
Q psy10677 245 IFSRT 249 (317)
Q Consensus 245 ~l~~~ 249 (317)
.|...
T Consensus 75 ~~~~~ 79 (664)
T 1c4o_A 75 ELFPE 79 (664)
T ss_dssp HHCTT
T ss_pred HHCCC
Confidence 99753
No 123
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.62 E-value=8.9e-05 Score=70.61 Aligned_cols=108 Identities=11% Similarity=0.009 Sum_probs=63.5
Q ss_pred CcccCCChHHHHHHHHhcCCCEEE-EEc--CCCC-CCC----cCcEEEEEEccCCCchhhhhhhcc--------CCCCcc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQL-NVG--SANL-AAN----PNIKQFVEICHEYEKPAKWWDSNN--------GHYPKS 64 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i-~v~--~~~~-~~~----~~i~q~~~~~~~~~K~~~L~~ll~--------lhg~~~ 64 (317)
+||||+|+.+.+++.. ..|+.. ... .... ... ..-.+.+++|+..+..+.+...|+ +||+..
T Consensus 135 ~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R 212 (440)
T 1yks_A 135 LMTATPPGTSDEFPHS--NGEIEDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTF 212 (440)
T ss_dssp EECSSCTTCCCSSCCC--SSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSC
T ss_pred EEeCCCCchhhhhhhc--CCCeeEeeeccChHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhH
Confidence 5899999887765542 233322 111 1110 000 112467788887766666666554 999644
Q ss_pred c----eeecCcccceec----ccccCCcCCCCCCcccccC-------------------CCCCCCccccCCCCHHHHHHH
Q psy10677 65 V----RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVP-------------------SYPDPSVNHLQGKTKEEIDSF 117 (317)
Q Consensus 65 q----~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~-------------------nf~~p~~~~i~~~~~~~i~~~ 117 (317)
+ +|++|+.+|||| ++|+|+ . +..|+ +|+.|... .+++++.
T Consensus 213 ~~~~~~F~~g~~~vLVaT~v~e~GiDi------p-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~------~~~~Qr~ 279 (440)
T 1yks_A 213 EREYPTIKQKKPDFILATDIAEMGANL------C-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISA------SSAAQRR 279 (440)
T ss_dssp C--------CCCSEEEESSSTTCCTTC------C-CSEEEECCEEEEEEEETTTTEEEEEEEEECCH------HHHHHHH
T ss_pred HHHHhhhcCCCceEEEECChhheeecc------C-ceEEEeCCccceeeecccccceeeccccccCH------HHHHHhc
Confidence 4 999999999999 999999 3 44443 35555432 5777877
Q ss_pred HHHCCc
Q psy10677 118 RKEHNI 123 (317)
Q Consensus 118 ~~~~~i 123 (317)
++.++.
T Consensus 280 GR~GR~ 285 (440)
T 1yks_A 280 GRIGRN 285 (440)
T ss_dssp TTSSCC
T ss_pred cccCCC
Confidence 777665
No 124
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.55 E-value=0.0025 Score=63.30 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=53.6
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+++-|.+|+-.++ .+.-.+ +.||+|||||... .-++.++.+. .+.++++++||...|.++.+.+.+
T Consensus 180 ~ln~~Q~~av~~~l--~~~~~l----i~GppGTGKT~~~-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVL--QRPLSL----IQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHH--TCSEEE----EECCTTSCHHHHH-HHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh--cCCCeE----EECCCCCCHHHHH-HHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 35999999999988 777778 9999999999764 3445555542 356899999999999998887765
Q ss_pred H
Q psy10677 246 F 246 (317)
Q Consensus 246 l 246 (317)
.
T Consensus 247 ~ 247 (624)
T 2gk6_A 247 T 247 (624)
T ss_dssp T
T ss_pred c
Confidence 3
No 125
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.55 E-value=0.0024 Score=60.96 Aligned_cols=78 Identities=6% Similarity=0.056 Sum_probs=50.6
Q ss_pred CCCCCcCCCCCCCCchhhhhccccccc--c-CcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcC
Q psy10677 155 TNNENNHNKNKKCGDKESKNWTIPLNF--Q-AKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAP 231 (317)
Q Consensus 155 ~~~p~~~~~~~~~t~iQ~~~ip~~l~~--~-g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~P 231 (317)
|..++....+..+++-|.+|+-.+++. + ...++ +.|+.|||||.. +..++..+.... ...+++++|
T Consensus 14 ~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~l----i~G~aGTGKT~l-l~~~~~~l~~~~------~~~il~~a~ 82 (459)
T 3upu_A 14 LVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVT----INGPAGTGATTL-TKFIIEALISTG------ETGIILAAP 82 (459)
T ss_dssp -------CCSSCCCHHHHHHHHHHHHHHHSSSCEEE----EECCTTSCHHHH-HHHHHHHHHHTT------CCCEEEEES
T ss_pred CccccCCCccccCCHHHHHHHHHHHHHHhcCCCEEE----EEeCCCCCHHHH-HHHHHHHHHhcC------CceEEEecC
Confidence 334444445555699999999877621 1 23788 999999999953 345666665531 247899999
Q ss_pred cHHHHHHHHHHH
Q psy10677 232 TRELAQQIQAVI 243 (317)
Q Consensus 232 treLa~Qi~~~~ 243 (317)
|...|..+.+.+
T Consensus 83 T~~Aa~~l~~~~ 94 (459)
T 3upu_A 83 THAAKKILSKLS 94 (459)
T ss_dssp SHHHHHHHHHHH
T ss_pred cHHHHHHHHhhh
Confidence 999887776544
No 126
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=96.53 E-value=0.00027 Score=70.85 Aligned_cols=107 Identities=10% Similarity=0.075 Sum_probs=67.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEcC----CCC-CC----CcCcEEEEEEccCCCchhhhhhhcc--------CCCCc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVGS----ANL-AA----NPNIKQFVEICHEYEKPAKWWDSNN--------GHYPK 63 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~~----~~~-~~----~~~i~q~~~~~~~~~K~~~L~~ll~--------lhg~~ 63 (317)
+||||+|..+.+++.. +.|+. .+.. ... .. ...-.+.+++|+..+..+.+...|+ +||+.
T Consensus 368 ~~SAT~~~~i~~~~~~--~~~i~-~v~~~~~~~~~~~~l~~l~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~e 444 (673)
T 2wv9_A 368 FMTATPPGTSDPFPDT--NSPVH-DVSSEIPDRAWSSGFEWITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKS 444 (673)
T ss_dssp EECSSCTTCCCSSCCC--SSCEE-EEECCCCSSCCSSCCHHHHSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred EEcCCCChhhhhhccc--CCceE-EEeeecCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChHH
Confidence 5899999887665432 23432 2221 110 00 0112467788887766666666654 99964
Q ss_pred cc----eeecCcccceec----ccccCCcCCCCCCcccccCC--------------------CCCCCccccCCCCHHHHH
Q psy10677 64 SV----RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS--------------------YPDPSVNHLQGKTKEEID 115 (317)
Q Consensus 64 ~q----~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n--------------------f~~p~~~~i~~~~~~~i~ 115 (317)
.+ +|++|+.+|||| ++|+|+ . +..|++ |+.|... .++++
T Consensus 445 R~~v~~~F~~g~~~VLVaTdv~e~GIDi------p-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~------~~y~Q 511 (673)
T 2wv9_A 445 YDTEYPKCKNGDWDFVITTDISEMGANF------G-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITS------ASAAQ 511 (673)
T ss_dssp HHHHGGGGGTCCCSEEEECGGGGTTCCC------C-CSEEEECCEECCEEEECSTTCEEEECCSEECCH------HHHHH
T ss_pred HHHHHHHHHCCCceEEEECchhhcceee------C-CcEEEECCCcccceeeecccccceecccCCCCH------HHHHH
Confidence 33 999999999999 999999 4 555554 3334322 67788
Q ss_pred HHHHHCCc
Q psy10677 116 SFRKEHNI 123 (317)
Q Consensus 116 ~~~~~~~i 123 (317)
+.++..+.
T Consensus 512 r~GRaGR~ 519 (673)
T 2wv9_A 512 RRGRVGRN 519 (673)
T ss_dssp HHTTSSCC
T ss_pred HhhccCCC
Confidence 87777765
No 127
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0021 Score=67.97 Aligned_cols=60 Identities=12% Similarity=0.017 Sum_probs=44.1
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccc-cCC-CCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNH-LQG-KTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~-i~~-~~~~~i~~~~~~~~i~ 124 (317)
+||+|++ .|++|..+|||| ++|+|+ .++..|+++..+.... ... -..+++++.+|.++.+
T Consensus 510 ~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDi------P~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 510 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM------PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp ECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--------CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred ecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCC------CCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 6999998 899999999999 999999 6777788776443221 001 1267899999988776
No 128
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.47 E-value=0.0052 Score=60.89 Aligned_cols=71 Identities=10% Similarity=0.026 Sum_probs=54.1
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+++-|.+|+. . .+..++ +.|+.|||||...+--+...+.... ...-+.|++++|+..|.++.+.+.+
T Consensus 9 ~Ln~~Q~~av~--~--~~~~~l----V~a~aGsGKT~~l~~ri~~l~~~~~----~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 9 SLNDKQREAVA--A--PRSNLL----VLAGAGSGKTRVLVHRIAWLMSVEN----CSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TCCHHHHHHHT--C--CSSCEE----EEECTTSCHHHHHHHHHHHHHHTSC----CCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh--C--CCCCEE----EEECCCCCHHHHHHHHHHHHHHhCC----CChhhEEEEeccHHHHHHHHHHHHH
Confidence 45999999996 2 456688 9999999999876655555444321 1224899999999999999999988
Q ss_pred Hhc
Q psy10677 246 FSR 248 (317)
Q Consensus 246 l~~ 248 (317)
+..
T Consensus 77 ~~~ 79 (647)
T 3lfu_A 77 LMG 79 (647)
T ss_dssp HHC
T ss_pred Hhc
Confidence 764
No 129
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.40 E-value=0.0013 Score=66.95 Aligned_cols=59 Identities=7% Similarity=-0.107 Sum_probs=44.2
Q ss_pred CCCCccc--------eee-----cCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccC-----------CCC
Q psy10677 59 GHYPKSV--------RFV-----LGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQ-----------GKT 110 (317)
Q Consensus 59 lhg~~~q--------~F~-----~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~-----------~~~ 110 (317)
+||+|++ .|+ +|..+|+|| ++|+|+ .++..|++++++...... -.+
T Consensus 344 lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidI------p~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S 417 (773)
T 2xau_A 344 LYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI------DGIVYVVDPGFSKQKVYNPRIRVESLLVSPIS 417 (773)
T ss_dssp ECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCC------TTEEEEEECSEEEEEEEETTTTEEEEEEEECC
T ss_pred eCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCc------CCeEEEEeCCCccceeeccccCccccccccCC
Confidence 8999997 898 999999999 999999 788888887652110000 112
Q ss_pred -HHHHHHHHHHCCc
Q psy10677 111 -KEEIDSFRKEHNI 123 (317)
Q Consensus 111 -~~~i~~~~~~~~i 123 (317)
.+.+++.++.++.
T Consensus 418 ~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 418 KASAQQRAGRAGRT 431 (773)
T ss_dssp HHHHHHHHHGGGSS
T ss_pred HHHHHhhccccCCC
Confidence 6788888888876
No 130
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=96.32 E-value=0.0015 Score=66.51 Aligned_cols=141 Identities=10% Similarity=-0.054 Sum_probs=88.1
Q ss_pred ccCCChHHHHHHHHhcCCCEEEEEcCCCCCCCcCcEE-EEEEccCCCchhhhhhhcc-----------------------
Q psy10677 3 SATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQ-FVEICHEYEKPAKWWDSNN----------------------- 58 (317)
Q Consensus 3 SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~~i~q-~~~~~~~~~K~~~L~~ll~----------------------- 58 (317)
+.|...+..++.+.|--+ .+.|. .+ .....+.+ .++++..++|..+|...+.
T Consensus 402 TGTa~te~~Ef~~iY~l~--vv~IP-tn-~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls 477 (922)
T 1nkt_A 402 TGTAQTEAAELHEIYKLG--VVSIP-TN-MPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLS 477 (922)
T ss_dssp ESCCGGGHHHHHHHHCCE--EEECC-CS-SCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred ccCchhHHHHHHHHhCCC--eEEeC-CC-CCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence 677777788888877322 34442 33 23233333 2455666678877766552
Q ss_pred ------------CCCCccc--------eeecCcccceec----ccccCCcCCCC------------CCc-----------
Q psy10677 59 ------------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDD------------KTS----------- 91 (317)
Q Consensus 59 ------------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~------------~~d----------- 91 (317)
|||++.+ .|+.| .|+|| +||+||++... ..+
T Consensus 478 ~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (922)
T 1nkt_A 478 RQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAA 555 (922)
T ss_dssp HHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHH
T ss_pred HHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHH
Confidence 9999876 67777 68999 99999976421 000
Q ss_pred ------------------c-----cccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCC----CCh
Q psy10677 92 ------------------V-----VTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETN----IPS 144 (317)
Q Consensus 92 ------------------~-----~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~----l~~ 144 (317)
+ .+|++|+.|... ..+++..+++.+.+-.|... .+.|.+|-- -+.
T Consensus 556 ~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~------riy~qr~GRTGRqGdpG~s~--fflSleD~l~r~f~~~ 627 (922)
T 1nkt_A 556 WHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESR------RIDNQLRGRSGRQGDPGESR--FYLSLGDELMRRFNGA 627 (922)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSH------HHHHHHHHTSSGGGCCEEEE--EEEETTSHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCH------HHHHHHhcccccCCCCeeEE--EEechhHHHHHHhhhH
Confidence 1 488999998765 78899999999888888654 344444421 123
Q ss_pred hhhcccCcCCCCC
Q psy10677 145 YILGPMKPKTTNN 157 (317)
Q Consensus 145 ~l~~~l~~~g~~~ 157 (317)
.+...+...|...
T Consensus 628 ~~~~~~~~~~~~~ 640 (922)
T 1nkt_A 628 ALETLLTRLNLPD 640 (922)
T ss_dssp HHHHHHHHTTCCT
T ss_pred HHHHHHHHhCCCC
Confidence 3444444555543
No 131
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.25 E-value=0.0049 Score=62.97 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=53.6
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+++-|.+|+-.++ .+.-.+ +.||+|||||... .-++.++... .+.++++++||..-|.++.+.+..
T Consensus 356 ~Ln~~Q~~Av~~~l--~~~~~l----I~GppGTGKT~ti-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVL--QRPLSL----IQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHH--TSSEEE----EECCTTSCHHHHH-HHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhc--cCCeEE----EEcCCCCCHHHHH-HHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 35999999999988 777778 9999999999764 4455555542 356899999999999988877765
Q ss_pred H
Q psy10677 246 F 246 (317)
Q Consensus 246 l 246 (317)
.
T Consensus 423 ~ 423 (800)
T 2wjy_A 423 T 423 (800)
T ss_dssp T
T ss_pred h
Confidence 3
No 132
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.17 E-value=0.006 Score=59.97 Aligned_cols=62 Identities=11% Similarity=-0.007 Sum_probs=49.3
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
+++-|.+++..++ .+..++ +.|+.|||||.. +..++..+.. .+..+++++||...|..+.+.
T Consensus 190 L~~~Q~~Av~~~~--~~~~~~----I~G~pGTGKTt~-i~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 190 LSEEQASVLDQLA--GHRLVV----LTGGPGTGKSTT-TKAVADLAES-------LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp CCHHHHHHHHHHT--TCSEEE----EECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--hCCEEE----EEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEecCcHHHHHHhHhh
Confidence 4999999999999 888899 999999999965 2334444443 256899999999999887653
No 133
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0059 Score=62.38 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=53.5
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.+++-|.+|+-.++ .+.-++ +.||+|||||.... -++.++.+. .+.+.|+++||..-|.++.+.+.+
T Consensus 360 ~Ln~~Q~~Av~~~l--~~~~~l----I~GppGTGKT~~i~-~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 360 QLNSSQSNAVSHVL--QRPLSL----IQGPPGTGKTVTSA-TIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCHHHHHHHHHHT--TCSEEE----EECSTTSSHHHHHH-HHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh--cCCCEE----EECCCCCCHHHHHH-HHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHh
Confidence 45999999999998 776678 99999999997643 344444431 246899999999999999888876
Q ss_pred H
Q psy10677 246 F 246 (317)
Q Consensus 246 l 246 (317)
.
T Consensus 427 ~ 427 (802)
T 2xzl_A 427 L 427 (802)
T ss_dssp T
T ss_pred h
Confidence 5
No 134
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.68 E-value=0.0022 Score=61.95 Aligned_cols=70 Identities=7% Similarity=0.002 Sum_probs=33.3
Q ss_pred EEEEEEccCCCchhhhhhhcc--------------------CCCCccc--------eeec-Ccccceec----ccccCCc
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------------------GHYPKSV--------RFVL-GTAGFLLS----AVSFSLP 84 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------------------lhg~~~q--------~F~~-g~~~iLva----arg~~~~ 84 (317)
....++|+..+-.+.|.+.|. +||+|++ +|++ |..+|||| ++|+|+
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDi- 469 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI- 469 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC---------
T ss_pred ceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCc-
Confidence 345677776666666665552 5788987 9999 99999999 999999
Q ss_pred CCCCCCcccccCCCCCCCccccCCCCHHHHHHHHH
Q psy10677 85 FRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRK 119 (317)
Q Consensus 85 lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~ 119 (317)
.++..|++|+.|... ..++++.+|
T Consensus 470 -----p~v~~VI~~d~p~s~------~~~~Qr~GR 493 (556)
T 4a2p_A 470 -----VQCNLVVLYEYSGNV------TKMIQVRGR 493 (556)
T ss_dssp --------CEEEEETCCSCH------HHHHHC---
T ss_pred -----hhCCEEEEeCCCCCH------HHHHHhcCC
Confidence 899999999998654 677777777
No 135
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.51 E-value=0.00078 Score=63.84 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=51.3
Q ss_pred CcccCCChHHHHHHHHhcCCCEEEEEc----CCCC-CCC----cCcEEEEEEccCCCchhhhhhhcc--------CCCCc
Q psy10677 1 MWSATWPREIQKLAKEFLSDPIQLNVG----SANL-AAN----PNIKQFVEICHEYEKPAKWWDSNN--------GHYPK 63 (317)
Q Consensus 1 lFSAT~~~~v~~l~~~~l~~p~~i~v~----~~~~-~~~----~~i~q~~~~~~~~~K~~~L~~ll~--------lhg~~ 63 (317)
+||||++..+.++... +.|+ +.+. .... ... ..-.+.+++|+..+..+.+...|+ +||++
T Consensus 129 ~~SAT~~~~~~~~~~~--~~~i-~~~~~~~~~~~~~~~~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~ 205 (431)
T 2v6i_A 129 FMTATPPGTTEAFPPS--NSPI-IDEETRIPDKAWNSGYEWITEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKT 205 (431)
T ss_dssp EEESSCTTCCCSSCCC--SSCC-EEEECCCCSSCCSSCCHHHHSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTT
T ss_pred EEeCCCCcchhhhcCC--CCce-eeccccCCHHHHHHHHHHHHcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 5899999876654432 2232 2221 1110 000 112356778887666666665554 99986
Q ss_pred cc----eeecCcccceec----ccccCCc
Q psy10677 64 SV----RFVLGTAGFLLS----AVSFSLP 84 (317)
Q Consensus 64 ~q----~F~~g~~~iLva----arg~~~~ 84 (317)
.+ +|++|+.+|||| ++|+|+|
T Consensus 206 r~~~~~~f~~g~~~vLVaT~v~e~GiDip 234 (431)
T 2v6i_A 206 FESEYPKCKSEKWDFVITTDISEMGANFK 234 (431)
T ss_dssp HHHHTTHHHHSCCSEEEECGGGGTSCCCC
T ss_pred HHHHHHhhcCCCCeEEEECchHHcCcccC
Confidence 65 999999999999 9999994
No 136
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.02 Score=60.01 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=41.6
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCC----CCCCCccccCCCCHHHHHHHHHHCC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS----YPDPSVNHLQGKTKEEIDSFRKEHN 122 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n----f~~p~~~~i~~~~~~~i~~~~~~~~ 122 (317)
+||+|++ .|++|.++|||| ++|+|+ .+...|++ |+.+..... -..++++..++.++
T Consensus 412 ~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDi------P~~~vVI~~~~kfd~~~~rp~--s~~~y~Qr~GRAGR 483 (1010)
T 2xgj_A 412 HHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM------PAKTVVFTSVRKWDGQQFRWV--SGGEYIQMSGRAGR 483 (1010)
T ss_dssp ESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTC------CBSEEEESCSEEECSSCEEEC--CHHHHHHHHTTBCC
T ss_pred ECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCC------CCceEEEeCCcccCCcCCccC--CHHHHhHhhhhccc
Confidence 3899987 899999999999 999999 66677776 765321000 12577777777766
Q ss_pred ce
Q psy10677 123 IT 124 (317)
Q Consensus 123 i~ 124 (317)
.+
T Consensus 484 ~G 485 (1010)
T 2xgj_A 484 RG 485 (1010)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 137
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.28 E-value=0.02 Score=57.24 Aligned_cols=70 Identities=7% Similarity=-0.103 Sum_probs=53.5
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+++-|.+++-. .+..++ +.|+.|||||.+..-=+...+.... ......|+++.|+..|.++.+.+.+.
T Consensus 3 L~~~Q~~av~~----~~~~~l----V~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 3 LNPGQQQAVEF----VTGPCL----VLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCHHHHHHHHC----CSSEEE----ECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC----CCCCEE----EEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 58999998854 346778 8999999999877665555554311 12357999999999999999999887
Q ss_pred hc
Q psy10677 247 SR 248 (317)
Q Consensus 247 ~~ 248 (317)
..
T Consensus 71 l~ 72 (673)
T 1uaa_A 71 LG 72 (673)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 138
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.19 E-value=0.036 Score=55.92 Aligned_cols=70 Identities=9% Similarity=0.001 Sum_probs=53.1
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
+++-|.+|+-. .+..++ +.|+.|||||.+..-=+...+.... ......|+++.|+..|..+.+.+.++
T Consensus 12 Ln~~Q~~av~~----~~g~~l----V~AgAGSGKT~vL~~ri~~ll~~~~----~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 12 LNKEQQEAVRT----TEGPLL----IMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp SCHHHHHHHHC----CSSCEE----EEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC----CCCCEE----EEEcCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 49999998854 345778 9999999999887666555554321 12347999999999999999988887
Q ss_pred hc
Q psy10677 247 SR 248 (317)
Q Consensus 247 ~~ 248 (317)
..
T Consensus 80 l~ 81 (724)
T 1pjr_A 80 LG 81 (724)
T ss_dssp HG
T ss_pred hc
Confidence 54
No 139
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=95.14 E-value=0.0077 Score=62.84 Aligned_cols=57 Identities=14% Similarity=0.004 Sum_probs=49.4
Q ss_pred CCCCccc--------eeecCc--ccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGT--AGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~--~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
+||+|++ +|++|+ ++|||| ++|+|+ .+...+++|+.|... ..++++.++.++++
T Consensus 534 lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl------~~~~~VI~~d~p~~~------~~~~Q~~GR~~R~G 601 (968)
T 3dmq_A 534 FHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNF------QFASHMVMFDLPFNP------DLLEQRIGRLDRIG 601 (968)
T ss_dssp ECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCC------TTCCEEECSSCCSSH------HHHHHHHHTTSCSS
T ss_pred EeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCc------ccCcEEEEecCCCCH------HHHHHHhhccccCC
Confidence 9999998 999998 999999 999999 788999999988644 67888888888876
Q ss_pred eec
Q psy10677 125 LIG 127 (317)
Q Consensus 125 ~~g 127 (317)
-.|
T Consensus 602 q~~ 604 (968)
T 3dmq_A 602 QAH 604 (968)
T ss_dssp SCS
T ss_pred CCc
Confidence 554
No 140
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.95 E-value=0.0074 Score=60.37 Aligned_cols=79 Identities=10% Similarity=0.038 Sum_probs=57.5
Q ss_pred EEEEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS 97 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n 97 (317)
.+.+++|......+.|...|. +||+|++ +|++|+++|||| ++|+|+ .++..+++
T Consensus 440 ~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDi------p~v~lVI~ 513 (664)
T 1c4o_A 440 ERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDI------PEVSLVAI 513 (664)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCC------TTEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccC------CCCCEEEE
Confidence 355666766666666666554 8999987 799999999998 999999 78888988
Q ss_pred CCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 98 YPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 98 f~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
++.+..... .-..+++++.++.++.
T Consensus 514 ~d~d~~G~p-~s~~~~iQr~GRagR~ 538 (664)
T 1c4o_A 514 LDADKEGFL-RSERSLIQTIGRAARN 538 (664)
T ss_dssp TTTTSCSGG-GSHHHHHHHHGGGTTS
T ss_pred eCCcccCCC-CCHHHHHHHHCccCcC
Confidence 886321100 0125788888888775
No 141
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.87 E-value=0.038 Score=59.09 Aligned_cols=104 Identities=16% Similarity=0.049 Sum_probs=70.1
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
++|+-|.++|-. .+.+++ +.|..|||||.+.+--++..+..... ....-+.|++++|+..|..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~----~~~~~~----v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS----TGQDIL----VAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC----CSSCEE----EEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC----CCCCEE----EEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHH
Confidence 459999998753 678999 99999999999887777766654210 11234899999999999999988887
Q ss_pred HhcCC-CcEEEEEECCCCHHHHHHHccCcEEECcHHHHH
Q psy10677 246 FSRTM-RIRHACLYGGTSKMYQVILLRILTSATNTSLGI 283 (317)
Q Consensus 246 l~~~~-~~~~~~~~gg~~~~~~~~~~~~ilv~TP~~l~~ 283 (317)
..... +-. -.......+...+.++-|+|=..++.
T Consensus 80 ~l~~~~~~~----~~~~~~~~~~~~~~~~~i~T~hsf~~ 114 (1232)
T 3u4q_A 80 ALEKELVQR----PGSLHIRRQLSLLNRASISTLHSFCL 114 (1232)
T ss_dssp HHHHHHHHS----TTCHHHHHHHHHTTTSEEECHHHHHH
T ss_pred HHHHHhhcC----cchHHHHHHHhccCCCeEEeHHHHHH
Confidence 54321 000 00112344555566678888666653
No 142
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=94.59 E-value=0.0098 Score=59.41 Aligned_cols=70 Identities=7% Similarity=-0.001 Sum_probs=51.8
Q ss_pred EEEEEEccCCCchhhhhhhcc--------------CCCC--------ccc--------eeecCcccceec----ccccCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------------GHYP--------KSV--------RFVLGTAGFLLS----AVSFSL 83 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------------lhg~--------~~q--------~F~~g~~~iLva----arg~~~ 83 (317)
....++|...+..+.|...|. +||+ |++ +|++|+.+|||| ++|+|+
T Consensus 401 ~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDi 480 (699)
T 4gl2_A 401 ARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDI 480 (699)
T ss_dssp CCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCC
T ss_pred CcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcc
Confidence 345677777665666555432 8999 997 999999999999 999999
Q ss_pred cCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHH
Q psy10677 84 PFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRK 119 (317)
Q Consensus 84 ~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~ 119 (317)
.++..|++|++|... ..++++.+|
T Consensus 481 ------p~v~~VI~~d~p~s~------~~~~Qr~GR 504 (699)
T 4gl2_A 481 ------KECNIVIRYGLVTNE------IAMVQARGR 504 (699)
T ss_dssp ------CSCCCCEEESCCCCH------HHHHHHHTT
T ss_pred ------ccCCEEEEeCCCCCH------HHHHHHcCC
Confidence 899999999998654 567776665
No 143
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=94.37 E-value=0.0073 Score=61.59 Aligned_cols=70 Identities=7% Similarity=0.002 Sum_probs=36.6
Q ss_pred EEEEEEccCCCchhhhhhhcc--------------------CCCCccc--------eeec-Ccccceec----ccccCCc
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------------------GHYPKSV--------RFVL-GTAGFLLS----AVSFSLP 84 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------------------lhg~~~q--------~F~~-g~~~iLva----arg~~~~ 84 (317)
....++|+..+-.+.|.+.|+ +||+|++ +|++ |..+|||| ++|+|+
T Consensus 632 ~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDl- 710 (797)
T 4a2q_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI- 710 (797)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC--------
T ss_pred CeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCc-
Confidence 345677777666666665551 6888987 9999 99999999 999999
Q ss_pred CCCCCCcccccCCCCCCCccccCCCCHHHHHHHHH
Q psy10677 85 FRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRK 119 (317)
Q Consensus 85 lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~ 119 (317)
.++..|++|+.|... ..++++.+|
T Consensus 711 -----p~v~~VI~yd~p~s~------~~~iQr~GR 734 (797)
T 4a2q_A 711 -----VQCNLVVLYEYSGNV------TKMIQVRGR 734 (797)
T ss_dssp -----CCCSEEEEESCCSCH------HHHHTC---
T ss_pred -----hhCCEEEEeCCCCCH------HHHHHhcCC
Confidence 899999999998654 577777766
No 144
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=94.34 E-value=0.0091 Score=57.39 Aligned_cols=61 Identities=8% Similarity=-0.006 Sum_probs=38.0
Q ss_pred EEEEEEccCCCchhhhhhhcc--------------------CCCCccc--------eeec-Ccccceec----ccccCCc
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------------------GHYPKSV--------RFVL-GTAGFLLS----AVSFSLP 84 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------------------lhg~~~q--------~F~~-g~~~iLva----arg~~~~ 84 (317)
....++|+..+-.+.|...|. +||+|++ +|++ |..+|||| ++|+|+
T Consensus 390 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDl- 468 (555)
T 3tbk_A 390 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDI- 468 (555)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEET-
T ss_pred ceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCcc-
Confidence 456677877666666655542 5678887 9999 99999999 999999
Q ss_pred CCCCCCcccccCCCCCCCcc
Q psy10677 85 FRDDKTSVVTVPSYPDPSVN 104 (317)
Q Consensus 85 lr~~~~d~~~v~nf~~p~~~ 104 (317)
.++..|++|+.|...
T Consensus 469 -----p~v~~VI~~d~p~s~ 483 (555)
T 3tbk_A 469 -----AECNLVILYEYVGNV 483 (555)
T ss_dssp -----TSCSEEEEESCCSSC
T ss_pred -----ccCCEEEEeCCCCCH
Confidence 899999999988543
No 145
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.67 E-value=0.022 Score=54.01 Aligned_cols=54 Identities=11% Similarity=0.016 Sum_probs=46.8
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
+||++++ +|++|+.+|||| ++|+|+ .+...+++|+.|... ...+++.++.++..
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldl------p~~~~Vi~~~~~~s~------~~~~Q~~GR~~R~g 439 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDV------PDANVGVIMSGSGSA------REYIQRLGRILRPS 439 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCS------CCBSEEEEECCSSCC------HHHHHHHHHSBCCC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCccc------ccCcEEEEECCCCCH------HHHHHHHhhccCCC
Confidence 9999986 899999999999 999999 788889988877543 68888888888776
No 146
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=93.64 E-value=0.013 Score=61.00 Aligned_cols=70 Identities=7% Similarity=0.002 Sum_probs=36.8
Q ss_pred EEEEEEccCCCchhhhhhhcc--------------------CCCCccc--------eeec-Ccccceec----ccccCCc
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------------------GHYPKSV--------RFVL-GTAGFLLS----AVSFSLP 84 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------------------lhg~~~q--------~F~~-g~~~iLva----arg~~~~ 84 (317)
....++|+..+-.+.|.+.|. +||+|++ +|++ |..+|||| ++|+|+
T Consensus 632 ~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDl- 710 (936)
T 4a2w_A 632 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI- 710 (936)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------C-
T ss_pred CeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcc-
Confidence 445667776555555555442 5888997 9999 99999999 999999
Q ss_pred CCCCCCcccccCCCCCCCccccCCCCHHHHHHHHH
Q psy10677 85 FRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRK 119 (317)
Q Consensus 85 lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~ 119 (317)
.++..|++|+.|... ..++++.+|
T Consensus 711 -----p~v~~VI~yD~p~s~------~~~iQr~GR 734 (936)
T 4a2w_A 711 -----VQCNLVVLYEYSGNV------TKMIQVRGR 734 (936)
T ss_dssp -----CCCSEEEEESCCSCS------HHHHCC---
T ss_pred -----hhCCEEEEeCCCCCH------HHHHHhcCC
Confidence 899999999988654 677777776
No 147
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=93.33 E-value=0.01 Score=59.30 Aligned_cols=70 Identities=9% Similarity=-0.011 Sum_probs=35.9
Q ss_pred EEEEEEccCCCchhhhhhhcc------------C--------CCCccc--------eeec-Ccccceec----ccccCCc
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN------------G--------HYPKSV--------RFVL-GTAGFLLS----AVSFSLP 84 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~------------l--------hg~~~q--------~F~~-g~~~iLva----arg~~~~ 84 (317)
.+..++|+..+..+.|...|+ + ||+|++ +|++ |..+|||| ++|+|+
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDi- 477 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI- 477 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC----
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcC-
Confidence 356778887766666665553 4 669987 9998 99999999 999999
Q ss_pred CCCCCCcccccCCCCCCCccccCCCCHHHHHHHHH
Q psy10677 85 FRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRK 119 (317)
Q Consensus 85 lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~ 119 (317)
.++..|++|+.|... +.++++.+|
T Consensus 478 -----p~v~~VI~~d~p~s~------~~~~Qr~GR 501 (696)
T 2ykg_A 478 -----AQCNLVILYEYVGNV------IKMIQTRGR 501 (696)
T ss_dssp -----CCCSEEEEESCC--C------CCC------
T ss_pred -----ccCCEEEEeCCCCCH------HHHHHhhcc
Confidence 889999999988643 344566555
No 148
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=93.08 E-value=0.03 Score=49.53 Aligned_cols=55 Identities=18% Similarity=0.016 Sum_probs=34.7
Q ss_pred CCCCccc--------eeecC-ccc-ceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLG-TAG-FLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g-~~~-iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
+||++++ +|++| ..+ +|++ ++|+|+ .....+++|+.|-.. ..++++..+.++++
T Consensus 143 l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl------~~a~~VI~~d~~wnp------~~~~Q~~gR~~R~G 210 (271)
T 1z5z_A 143 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINL------TSANRVIHFDRWWNP------AVEDQATDRVYRIG 210 (271)
T ss_dssp ECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCC------TTCSEEEECSCCSCT------TTC-----------
T ss_pred EECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCc------ccCCEEEEECCCCCh------hHHHHHHHhccccC
Confidence 8999987 99999 777 5666 999999 788999999987543 24556666666554
Q ss_pred e
Q psy10677 125 L 125 (317)
Q Consensus 125 ~ 125 (317)
-
T Consensus 211 q 211 (271)
T 1z5z_A 211 Q 211 (271)
T ss_dssp -
T ss_pred C
Confidence 3
No 149
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=92.96 E-value=0.31 Score=39.46 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=40.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|++-|..+++.+.. .++.+..++|+.+..++...+.. ++|||.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 46899999999999888877765 37789999999998776654432 688883
No 150
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.75 E-value=0.04 Score=56.03 Aligned_cols=58 Identities=12% Similarity=-0.040 Sum_probs=43.2
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLI 126 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~ 126 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..+++++.|... .....++.++.++..-.
T Consensus 619 lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDi------P~v~~VIi~d~~r~~-----l~~l~Qr~GRaGR~g~~ 687 (780)
T 1gm5_A 619 MHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV------PRANVMVIENPERFG-----LAQLHQLRGRVGRGGQE 687 (780)
T ss_dssp CCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC------TTCCEEEBCSCSSSC-----TTHHHHHHHTSCCSSTT
T ss_pred EeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccC------CCCCEEEEeCCCCCC-----HHHHHHHhcccCcCCCC
Confidence 9999997 999999999999 999999 888889888876422 02333466655554433
Q ss_pred c
Q psy10677 127 G 127 (317)
Q Consensus 127 g 127 (317)
|
T Consensus 688 g 688 (780)
T 1gm5_A 688 A 688 (780)
T ss_dssp C
T ss_pred C
Confidence 3
No 151
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=92.66 E-value=0.21 Score=49.03 Aligned_cols=71 Identities=7% Similarity=-0.063 Sum_probs=56.8
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
+|.|...+-.+. ..+-++ +..+-|+|||.+...-++..+... .+..+++++||++.|..+.+.++.+.
T Consensus 165 ~p~Q~~i~~~l~--~~r~~~----i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 165 RDYQRDMLKIMS--SKRMTV----CNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CHHHHHHHHHHH--HCSEEE----EEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhc--cccEEE----EEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 999999887665 667788 899999999998776666555542 35689999999999999999888876
Q ss_pred cCC
Q psy10677 248 RTM 250 (317)
Q Consensus 248 ~~~ 250 (317)
+..
T Consensus 233 ~~~ 235 (592)
T 3cpe_A 233 ELL 235 (592)
T ss_dssp TTS
T ss_pred HhC
Confidence 543
No 152
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.48 E-value=0.022 Score=53.23 Aligned_cols=74 Identities=14% Similarity=0.032 Sum_probs=51.7
Q ss_pred EEEEEEccCCCchhhhhhhcc--------CCC--------Cccc--------eeecCcccceec----ccccCCcCCCCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN--------GHY--------PKSV--------RFVLGTAGFLLS----AVSFSLPFRDDK 89 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~--------lhg--------~~~q--------~F~~g~~~iLva----arg~~~~lr~~~ 89 (317)
....++|+..+-.+.|.+.|. +|| +|++ +|++|..+|||| ++|+|+
T Consensus 362 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl------ 435 (494)
T 1wp9_A 362 SKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDV------ 435 (494)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGS------
T ss_pred CeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCc------
Confidence 345667777666666666554 899 8876 999999999999 999999
Q ss_pred CcccccCCCCCCCccccCCCCHHHHHHHHHHCCc
Q psy10677 90 TSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 90 ~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i 123 (317)
.+...|+.|+.|... ..++++.+|.++.
T Consensus 436 ~~~~~Vi~~d~~~~~------~~~~Qr~GR~~R~ 463 (494)
T 1wp9_A 436 PEVDLVVFYEPVPSA------IRSIQRRGRTGRH 463 (494)
T ss_dssp TTCCEEEESSCCHHH------HHHHHHHTTSCSC
T ss_pred hhCCEEEEeCCCCCH------HHHHHHHhhccCC
Confidence 788889989877533 3455555554444
No 153
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=92.37 E-value=0.45 Score=39.32 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=41.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEEC
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSAT 277 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~T 277 (317)
++++||.|+|++-|..+.+.++.. ++++..++|+.+..++...+.. ++|+|
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 111 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 111 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 457999999999999998888765 6788999999998776654433 79998
No 154
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=91.99 E-value=0.052 Score=51.97 Aligned_cols=57 Identities=5% Similarity=-0.113 Sum_probs=47.2
Q ss_pred CCCCccc--------eeecCcccceec-----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCcee
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS-----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITL 125 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva-----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~ 125 (317)
+||+|++ +|++|+.+|||| ++|+|+ .++..++.++.|... ...++..+|.++..-
T Consensus 377 ~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDi------p~v~~vi~~~~~~s~------~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 377 VSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISV------KNLHHVVLAHGVKSK------IIVLQTIGRVLRKHG 444 (510)
T ss_dssp ESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCC------CSEEEEEESSCCCSC------CHHHHHHHHHHTTTC
T ss_pred EECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccc------ccCcEEEEeCCCCCH------HHHHHHHhcccccCC
Confidence 9999996 899999999999 799999 788889888877533 477888888877764
Q ss_pred ec
Q psy10677 126 IG 127 (317)
Q Consensus 126 ~g 127 (317)
.|
T Consensus 445 ~~ 446 (510)
T 2oca_A 445 SK 446 (510)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 155
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.93 E-value=0.4 Score=38.80 Aligned_cols=52 Identities=8% Similarity=0.046 Sum_probs=41.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|++-|..+++.+... ++.+..++|+.+..++...+.. ++|||.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 89 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 458999999999999988887764 6788999999988776654433 788884
No 156
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=91.92 E-value=0.31 Score=39.00 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=41.4
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|++-|..+.+.+... ++.+..++|+.+..++...+.. ++|+|.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~ 93 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD 93 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 458999999999999988887764 6789999999987766654432 788883
No 157
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.78 E-value=0.2 Score=49.96 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=48.5
Q ss_pred Cchhhhhcccccc--ccCc-CcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLN--FQAK-KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g~-dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 244 (317)
+..|..++..+.. ..|. ... +.+-||||||++..- ++.... . ..|||+|+.++|.|.++.++
T Consensus 14 ~~~Q~~~i~~l~~~~~~~~~~~~----l~g~~gs~k~~~~a~-~~~~~~---------~-~~lvv~~~~~~A~~l~~el~ 78 (661)
T 2d7d_A 14 QGDQPKAIEKLVKGIQEGKKHQT----LLGATGTGKTFTVSN-LIKEVN---------K-PTLVIAHNKTLAGQLYSEFK 78 (661)
T ss_dssp CTTHHHHHHHHHHHHHTTCSEEE----EEECTTSCHHHHHHH-HHHHHC---------C-CEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCcEE----EECcCCcHHHHHHHH-HHHHhC---------C-CEEEEECCHHHHHHHHHHHH
Confidence 9999888876552 1332 355 679999999876532 333321 2 38999999999999999999
Q ss_pred HHhcC
Q psy10677 245 IFSRT 249 (317)
Q Consensus 245 ~l~~~ 249 (317)
.|...
T Consensus 79 ~~~~~ 83 (661)
T 2d7d_A 79 EFFPN 83 (661)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 99753
No 158
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=91.63 E-value=0.39 Score=38.42 Aligned_cols=52 Identities=10% Similarity=0.194 Sum_probs=41.1
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|++-|..+.+.+... ++.+..++|+.+..++...+.. ++|||.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 88 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 468999999999998888877663 6788999999997766554432 789983
No 159
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=91.63 E-value=0.32 Score=45.13 Aligned_cols=70 Identities=7% Similarity=-0.079 Sum_probs=54.8
Q ss_pred CCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 167 CGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 167 ~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
++|.|...+-.+. ..+-++ +..+-+.|||.+...-++..+... .+..+++++||++-|..+.+.++.+
T Consensus 164 L~p~Qk~il~~l~--~~R~~v----i~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 164 LRDYQRDMLKIMS--SKRMTV----CNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp CCHHHHHHHHHHH--HSSEEE----EEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhc--cCcEEE----EEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 3999998886654 456677 899999999998777666555432 3568999999999999888888877
Q ss_pred hc
Q psy10677 247 SR 248 (317)
Q Consensus 247 ~~ 248 (317)
.+
T Consensus 232 i~ 233 (385)
T 2o0j_A 232 IE 233 (385)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 160
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.05 E-value=0.44 Score=39.99 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=42.0
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|++-+..+.+.+... ++.+..++|+.+..++...+.. ++|||.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 458999999999999888887764 6788999999998777655533 789983
No 161
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=91.00 E-value=0.058 Score=53.99 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=51.4
Q ss_pred EEEccCCCchhhhhhhcc--------CCCCccc--------eeec--Ccccceec----ccccCCcCCCCCCcccccCCC
Q psy10677 41 VEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVL--GTAGFLLS----AVSFSLPFRDDKTSVVTVPSY 98 (317)
Q Consensus 41 ~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~--g~~~iLva----arg~~~~lr~~~~d~~~v~nf 98 (317)
.++|...+..+.+...|. +||+|++ .|++ |+.+|||| ++|+|+ ++..|+++
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-------~v~~VI~~ 396 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-------SIRRIIFY 396 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-------CBSEEEES
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-------CccEEEEC
Confidence 455665555666665554 9999997 8999 99999999 999997 56677777
Q ss_pred CCCCcc-------ccCCCC-HHHHHHHHHHCCcee
Q psy10677 99 PDPSVN-------HLQGKT-KEEIDSFRKEHNITL 125 (317)
Q Consensus 99 ~~p~~~-------~i~~~~-~~~i~~~~~~~~i~~ 125 (317)
+.+... .....+ .+.+++.+|.++...
T Consensus 397 ~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~ 431 (677)
T 3rc3_A 397 SLIKPSINEKGERELEPITTSQALQIAGRAGRFSS 431 (677)
T ss_dssp CSBC-----------CBCCHHHHHHHHTTBTCTTS
T ss_pred CccccccccCCccccccCCHHHHHHHhcCCCCCCC
Confidence 664310 011122 566777666666543
No 162
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=89.35 E-value=0.12 Score=50.63 Aligned_cols=75 Identities=11% Similarity=0.045 Sum_probs=55.8
Q ss_pred EEEEEEccCCCchhhhhhhcc----------------CCCCccc-------eeecCccc---ceec----ccccCCcCCC
Q psy10677 38 KQFVEICHEYEKPAKWWDSNN----------------GHYPKSV-------RFVLGTAG---FLLS----AVSFSLPFRD 87 (317)
Q Consensus 38 ~q~~~~~~~~~K~~~L~~ll~----------------lhg~~~q-------~F~~g~~~---iLva----arg~~~~lr~ 87 (317)
.+.+++|...+..+.+...|. +||++++ +|++|+.+ |||| ++|+|+
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi---- 515 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDA---- 515 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC----
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECChhhcCccc----
Confidence 456778877665555555442 8999875 99998766 7777 899999
Q ss_pred CCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 88 DKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 88 ~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
.++..+++++.+... ..+++..+|.++..
T Consensus 516 --p~v~~Vi~~~~~~s~------~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 516 --PTCKNVVLARVVNSM------SEFKQIVGRGTRLR 544 (590)
T ss_dssp --TTEEEEEEESCCCCH------HHHHHHHTTSCCCB
T ss_pred --hheeEEEEEecCCCh------HHHHHHHhhhcccC
Confidence 889999988887644 56678887777764
No 163
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.09 E-value=0.16 Score=44.44 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=15.9
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. ++||||||||...
T Consensus 24 ~g~~v~----i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLIL----VTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEE----EECSTTCSHHHHH
T ss_pred CCCEEE----EECCCCccHHHHH
Confidence 677778 9999999999753
No 164
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=87.74 E-value=0.55 Score=43.90 Aligned_cols=44 Identities=9% Similarity=0.199 Sum_probs=32.6
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQ 237 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~ 237 (317)
...+++ +.|+||||||.+. -+++..+... +..++|+=|..|+..
T Consensus 52 ~~~h~~----i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLL----VNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEE----EEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEE----EECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 566788 9999999999874 4555555542 457888888888864
No 165
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.15 E-value=0.49 Score=38.80 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=34.3
Q ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 222 DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 222 ~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
.+.++||.|+|++-|..+.+.++.. ++.+..++|+.+..++...+.. ++|||.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 104 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 104 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3568999999999999888877663 6789999999876654433322 788883
No 166
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.96 E-value=0.45 Score=45.00 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=30.4
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
+.|+.|||||.... +.+ .. -..+|++||++++..+.+.+.+
T Consensus 166 I~G~aGsGKTt~I~----~~~-~~--------~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 166 VDGVPGCGKTKEIL----SRV-NF--------EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEECTTSCHHHHHH----HHC-CT--------TTCEEEESCHHHHHHHHHHHTT
T ss_pred EEcCCCCCHHHHHH----HHh-cc--------CCeEEEeCCHHHHHHHHHHhhh
Confidence 78999999997652 211 11 1459999999999998887753
No 167
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=85.16 E-value=0.27 Score=48.81 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=53.4
Q ss_pred EEEEEccCCCchhhhhhhcc--------CCCCccc--------eeecCccc---ceec----ccccCCcCCCCCCccccc
Q psy10677 39 QFVEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAG---FLLS----AVSFSLPFRDDKTSVVTV 95 (317)
Q Consensus 39 q~~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~---iLva----arg~~~~lr~~~~d~~~v 95 (317)
..++++...+-.+.|...+. +||++++ +|++|... +|++ +.|+|+ .....+
T Consensus 418 k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl------~~a~~V 491 (644)
T 1z3i_X 418 KVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL------IGANRL 491 (644)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCC------TTEEEE
T ss_pred EEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccc------ccCCEE
Confidence 34455665555555555553 9999987 89998764 6666 899999 788999
Q ss_pred CCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 96 PSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 96 ~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
++|+.+-.. ..+..+..+.++++
T Consensus 492 i~~d~~wnp------~~~~Qa~gR~~R~G 514 (644)
T 1z3i_X 492 VMFDPDWNP------ANDEQAMARVWRDG 514 (644)
T ss_dssp EECSCCSSH------HHHHHHHTTSSSTT
T ss_pred EEECCCCCc------cHHHHHHHhhhhcC
Confidence 999988543 56777777766663
No 168
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=84.87 E-value=1.1 Score=39.83 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=40.9
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEECc
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSATN 278 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~TP 278 (317)
+.++||.|+|++-+..+.+.+.. .++.+..++|+.+..++...+.. |+|||.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD 86 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec
Confidence 46899999999998887776654 37889999999998776655533 799984
No 169
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=83.79 E-value=0.24 Score=47.04 Aligned_cols=54 Identities=19% Similarity=0.026 Sum_probs=39.4
Q ss_pred CCCCccc--------eeecC-ccc-ceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 59 GHYPKSV--------RFVLG-TAG-FLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 59 lhg~~~q--------~F~~g-~~~-iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
+||++++ +|++| ..+ +|++ ++|+|+ .....+++|+.|-.. ..++++.+|.++++
T Consensus 372 ~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl------~~~~~vi~~d~~~~~------~~~~Q~~gR~~R~G 439 (500)
T 1z63_A 372 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINL------TSANRVIHFDRWWNP------AVEDQATDRVYRIG 439 (500)
T ss_dssp EETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCC------TTCSEEEESSCCSCC---------CHHHHTTTTTT
T ss_pred EECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCch------hhCCEEEEeCCCCCc------chHHHHHHHHHHcC
Confidence 8999986 89998 566 5666 899999 788889999887543 46677777777663
No 170
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.78 E-value=0.46 Score=37.10 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+.+++ +.||+|+|||..
T Consensus 26 ~~~~vl----l~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVF----LTGEAGSPFETV 43 (143)
T ss_dssp CSSCEE----EEEETTCCHHHH
T ss_pred CCCcEE----EECCCCccHHHH
Confidence 678899 999999999964
No 171
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=82.55 E-value=0.55 Score=36.72 Aligned_cols=19 Identities=0% Similarity=-0.253 Sum_probs=16.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+.+++ +.||+|+|||...
T Consensus 23 ~~~~vl----l~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVW----LYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEE----EESSTTSSHHHHH
T ss_pred CCCCEE----EECCCCCCHHHHH
Confidence 778899 9999999999754
No 172
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=83.11 E-value=0.26 Score=39.75 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=39.6
Q ss_pred CceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHccC-------cEEEC
Q psy10677 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLRI-------LTSAT 277 (317)
Q Consensus 223 ~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~~~-------ilv~T 277 (317)
+.++||.|+|++-|..+++.++.. ++.+..++|+.+..++...+.. ++|||
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 468999999999998888777654 6788899999887665554433 68888
No 173
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=81.75 E-value=2 Score=40.34 Aligned_cols=80 Identities=14% Similarity=-0.021 Sum_probs=41.4
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc-C-cHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHH----H
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA-P-TRELAQQIQAVISIFSRTMRIRHACLYGGTSKM----Y 265 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~-P-treLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~----~ 265 (317)
++|++|+|||....- +...+... +-+++++. . .|.-+ .+++..+....++.+.....+.+.. .
T Consensus 102 lvG~~GsGKTTt~~k-LA~~l~~~-------G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~ 170 (433)
T 3kl4_A 102 LVGVQGSGKTTTAGK-LAYFYKKR-------GYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQNPIEIAKK 170 (433)
T ss_dssp ECCCTTSCHHHHHHH-HHHHHHHT-------TCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCSCHHHHHHH
T ss_pred EECCCCCCHHHHHHH-HHHHHHHc-------CCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccCCHHHHHHH
Confidence 889999999975422 22233322 33444443 3 34333 3445555565566554443344422 1
Q ss_pred HHHHcc--C---cEEECcHHHH
Q psy10677 266 QVILLR--I---LTSATNTSLG 282 (317)
Q Consensus 266 ~~~~~~--~---ilv~TP~~l~ 282 (317)
...... . ++|=|||++.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHhcCCCEEEEECCCCcc
Confidence 222222 1 7999999743
No 174
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=80.87 E-value=2 Score=40.58 Aligned_cols=79 Identities=14% Similarity=-0.090 Sum_probs=42.5
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc--CcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHH---
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA--PTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ--- 266 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~--PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~--- 266 (317)
+++++|+|||.... -+..++.+. |-++++++ |-|.-| .++++.+....++.+.....+.+....
T Consensus 105 ivG~~G~GKTTt~~-kLA~~l~~~-------G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~ 173 (443)
T 3dm5_A 105 MVGIQGSGKTTTVA-KLARYFQKR-------GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEKDAIKLAKE 173 (443)
T ss_dssp EECCTTSSHHHHHH-HHHHHHHTT-------TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCCCHHHHHHH
T ss_pred EECcCCCCHHHHHH-HHHHHHHHC-------CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCCCHHHHHHH
Confidence 89999999997542 223333332 33444444 334433 445666666667766554444442211
Q ss_pred -HHH-----ccCcEEECcHHH
Q psy10677 267 -VIL-----LRILTSATNTSL 281 (317)
Q Consensus 267 -~~~-----~~~ilv~TP~~l 281 (317)
... ..-+||=|||++
T Consensus 174 al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 174 GVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHhCCCCEEEEECCCcc
Confidence 111 112788899975
No 175
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=80.74 E-value=1.3 Score=37.34 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=29.3
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.|.-++ +.|++|+|||... +-++..+... +-.++++. +.+-..++.+.+..
T Consensus 22 ~G~~~~----i~G~~GsGKTtl~-~~~~~~~~~~-------~~~v~~~~-~e~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVL----LSGGPGTGKTIFS-QQFLWNGLKM-------GEPGIYVA-LEEHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEE----EEECTTSSHHHHH-HHHHHHHHHT-------TCCEEEEE-SSSCHHHHHHHHHT
T ss_pred CCcEEE----EECCCCCCHHHHH-HHHHHHHHhc-------CCeEEEEE-ccCCHHHHHHHHHH
Confidence 667778 9999999999653 3333333321 23456654 33334555555543
No 176
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=79.33 E-value=0.65 Score=37.48 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=28.7
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.|+.++ +.||+|+|||...- .+...+... .+..+ +..+..++...+...+
T Consensus 37 ~g~~~~----l~G~~G~GKTtL~~-~i~~~~~~~------~g~~~-~~~~~~~~~~~~~~~~ 86 (180)
T 3ec2_A 37 EGKGLT----FVGSPGVGKTHLAV-ATLKAIYEK------KGIRG-YFFDTKDLIFRLKHLM 86 (180)
T ss_dssp GCCEEE----ECCSSSSSHHHHHH-HHHHHHHHH------SCCCC-CEEEHHHHHHHHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHHH-HHHHHHHHH------cCCeE-EEEEHHHHHHHHHHHh
Confidence 578888 99999999996443 233333211 12222 3345667766655443
No 177
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=79.11 E-value=10 Score=29.67 Aligned_cols=19 Identities=5% Similarity=-0.143 Sum_probs=15.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +.||+|+|||...
T Consensus 42 ~~~~vl----l~G~~G~GKT~la 60 (187)
T 2p65_A 42 TKNNPI----LLGDPGVGKTAIV 60 (187)
T ss_dssp SSCEEE----EESCGGGCHHHHH
T ss_pred CCCceE----EECCCCCCHHHHH
Confidence 456778 9999999999643
No 178
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.73 E-value=0.41 Score=45.16 Aligned_cols=54 Identities=7% Similarity=0.026 Sum_probs=34.4
Q ss_pred CCcccccCCCCChhhhcccCcC---CCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHH
Q psy10677 132 KPVKTLDETNIPSYILGPMKPK---TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|-.+|+|.+--+...+.|.+. -+.+| .-.+...++ ..+.++ +.||+|+|||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~p---------e~f~~~g~~-----~prGvL----LyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRA---------DKFKDMGIR-----APKGAL----MYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCS---------HHHHHHCCC-----CCCEEE----EESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCH---------HHHHhCCCC-----CCCeeE----EECcCCCCHHHH
Confidence 4556899988666666666543 23334 333333332 235678 999999999975
No 179
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=78.39 E-value=0.61 Score=46.61 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=36.3
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCC----CCCCCccccCCCC-HHHHHHHHHHC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS----YPDPSVNHLQGKT-KEEIDSFRKEH 121 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n----f~~p~~~~i~~~~-~~~i~~~~~~~ 121 (317)
+||+|++ .|++|..+|+|| ++|+|+ .+...|+. |+..........+ .+.+++.++.+
T Consensus 318 ~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidi------p~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaG 391 (715)
T 2va8_A 318 HHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNL------PARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAG 391 (715)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCC------CBSEEEECCC--------------CHHHHHHHHTTBC
T ss_pred ECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCC------CceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcC
Confidence 8999997 799999999999 999999 66666665 5521111111122 45566665555
Q ss_pred Cc
Q psy10677 122 NI 123 (317)
Q Consensus 122 ~i 123 (317)
+.
T Consensus 392 R~ 393 (715)
T 2va8_A 392 RP 393 (715)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 180
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=77.65 E-value=0.7 Score=43.32 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=15.3
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-++ ++||||||||...
T Consensus 166 ~ggii~----I~GpnGSGKTTlL 184 (418)
T 1p9r_A 166 PHGIIL----VTGPTGSGKSTTL 184 (418)
T ss_dssp SSEEEE----EECSTTSCHHHHH
T ss_pred cCCeEE----EECCCCCCHHHHH
Confidence 556678 9999999999653
No 181
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=77.53 E-value=1.7 Score=36.32 Aligned_cols=96 Identities=9% Similarity=-0.073 Sum_probs=52.5
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc------CcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCH--
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA------PTRELAQQIQAVISIFSRTMRIRHACLYGGTSK-- 263 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~------PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~-- 263 (317)
+..++|.|||.+.+--.+..+.. |-+++|+- .+-|. +.+..+ ++.....--|...
T Consensus 33 v~tG~GkGKTTaA~GlalRA~g~--------G~rV~~vQF~Kg~~~~gE~-----~~l~~L----~v~~~~~g~gf~~~~ 95 (196)
T 1g5t_A 33 VFTGNGKGKTTAAFGTAARAVGH--------GKNVGVVQFIKGTWPNGER-----NLLEPH----GVEFQVMATGFTWET 95 (196)
T ss_dssp EEESSSSCHHHHHHHHHHHHHHT--------TCCEEEEESSCCSSCCHHH-----HHHGGG----TCEEEECCTTCCCCG
T ss_pred EECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEeeCCCCCccHH-----HHHHhC----CcEEEEcccccccCC
Confidence 88999999999887666665543 55777772 22221 122222 2332221112111
Q ss_pred ---HHHHHHccCcEEECcHHHHHHHhcCCCCCCCCchhHHHhhhcCCcH
Q psy10677 264 ---MYQVILLRILTSATNTSLGIYLQQNDAHSPCLSVWRRLQDILGLTE 309 (317)
Q Consensus 264 ---~~~~~~~~~ilv~TP~~l~~~l~~~~~~~~~lde~d~l~~~~gf~~ 309 (317)
.++... .-..=.+..+.+..+..++++|||+--.+. +|+.+
T Consensus 96 ~~~~~~~~~----a~~~l~~a~~~l~~~~yDlvILDEi~~al~-~g~l~ 139 (196)
T 1g5t_A 96 QNREADTAA----CMAVWQHGKRMLADPLLDMVVLDELTYMVA-YDYLP 139 (196)
T ss_dssp GGHHHHHHH----HHHHHHHHHHHTTCTTCSEEEEETHHHHHH-TTSSC
T ss_pred CCcHHHHHH----HHHHHHHHHHHHhcCCCCEEEEeCCCcccc-CCCCC
Confidence 111111 111222344566678899999999977777 66544
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=76.68 E-value=0.62 Score=41.73 Aligned_cols=52 Identities=2% Similarity=-0.167 Sum_probs=30.0
Q ss_pred cccccCCCCChhhhcccCcCC---CCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 134 VKTLDETNIPSYILGPMKPKT---TNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g---~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
-.+|+++.-.....+.|++.= ...| ...+. ... ..+.++ +.||+|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~---------~~~~~----~~~--~~~~vL----l~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFP---------HLFKG----NRK--PTSGIL----LYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCG---------GGCCT----TCC--CCCEEE----EECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCH---------HHHhc----CCC--CCCeEE----EECCCCCcHHHHH
Confidence 357888876666666665531 1111 11111 111 345678 9999999999753
No 183
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=75.56 E-value=1.2 Score=35.83 Aligned_cols=19 Identities=0% Similarity=-0.218 Sum_probs=16.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.++.++ ++|++|||||...
T Consensus 10 ~~~~i~----i~G~~GsGKst~~ 28 (180)
T 3iij_A 10 LLPNIL----LTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCEE----EECSTTSSHHHHH
T ss_pred cCCeEE----EEeCCCCCHHHHH
Confidence 667788 9999999999754
No 184
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=75.08 E-value=0.76 Score=45.99 Aligned_cols=56 Identities=11% Similarity=0.100 Sum_probs=38.9
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCC----CCCCCccccCCCC-HHHHHHHHHHC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS----YPDPSVNHLQGKT-KEEIDSFRKEH 121 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n----f~~p~~~~i~~~~-~~~i~~~~~~~ 121 (317)
+||+|++ .|++|..+|||| ++|+|+ .+...+++ |+.. . ....+ .+.+++.+|.+
T Consensus 300 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdi------p~~~~VI~~~~~yd~~--g-~~~~s~~~~~Qr~GRaG 370 (720)
T 2zj8_A 300 HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINT------PAFRVIIRDIWRYSDF--G-MERIPIIEVHQMLGRAG 370 (720)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCC------CBSEEEECCSEECCSS--S-CEECCHHHHHHHHTTBC
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCC------CceEEEEcCCeeecCC--C-CccCCHHHHHHHHhhcC
Confidence 8999997 899999999999 999999 56666665 5410 0 00112 46667766666
Q ss_pred Cc
Q psy10677 122 NI 123 (317)
Q Consensus 122 ~i 123 (317)
+.
T Consensus 371 R~ 372 (720)
T 2zj8_A 371 RP 372 (720)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 185
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=75.04 E-value=0.86 Score=41.09 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=22.8
Q ss_pred cccccccCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+.+.+..+.+++ +.||+|+|||++. --++..+..
T Consensus 38 ~~i~~~~~~~ll----i~GpPGTGKT~~v-~~v~~~L~~ 71 (318)
T 3te6_A 38 DSLMSSQNKLFY----ITNADDSTKFQLV-NDVMDELIT 71 (318)
T ss_dssp HHHHTTCCCEEE----EECCCSHHHHHHH-HHHHHHHHH
T ss_pred HHhcCCCCCeEE----EECCCCCCHHHHH-HHHHHHHHH
Confidence 444434667888 9999999999754 334455543
No 186
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=75.00 E-value=1.1 Score=35.67 Aligned_cols=27 Identities=7% Similarity=-0.113 Sum_probs=18.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
.+..++ +.||+|+|||... --+...+.
T Consensus 42 ~~~~~l----l~G~~G~GKT~l~-~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPV----LIGEPGVGKTAIV-EGLAQRII 68 (195)
T ss_dssp SSCEEE----EECCTTSCHHHHH-HHHHHHHH
T ss_pred CCCceE----EECCCCCCHHHHH-HHHHHHHH
Confidence 345678 9999999999643 23344443
No 187
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=74.70 E-value=0.62 Score=40.89 Aligned_cols=54 Identities=7% Similarity=-0.014 Sum_probs=25.9
Q ss_pred CcccccCCCCChhhhcccCcC---CCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPK---TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
|-.+|+|.+-.+.+.+.|++. -+..| ...+...+. +- .| ++ +.||+|+|||+..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~---------~~l~~~~l~-~~--~G--vl----L~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNP---------DQFKALGLV-TP--AG--VL----LAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSH---------HHHHHTTCC-CC--SE--EE----EESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCH---------HHHHHcCCC-CC--Ce--EE----EECCCCCcHHHHH
Confidence 446889988666676666542 12222 212211111 11 33 78 9999999999643
No 188
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=74.61 E-value=1.1 Score=37.78 Aligned_cols=51 Identities=8% Similarity=0.177 Sum_probs=27.8
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHH-HHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYH-ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 245 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~-l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 245 (317)
.|.-++ +.|++|+|||. |++-++.+ +... +-.+++++ +.+-..++.+.+..
T Consensus 29 ~G~l~~----i~G~pG~GKT~-l~l~~~~~~~~~~-------~~~v~~~s-~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVL----LTGGTGTGKTT-FAAQFIYKGAEEY-------GEPGVFVT-LEERARDLRREMAS 80 (251)
T ss_dssp TTCEEE----EECCTTSSHHH-HHHHHHHHHHHHH-------CCCEEEEE-SSSCHHHHHHHHHT
T ss_pred CCeEEE----EEeCCCCCHHH-HHHHHHHHHHHhc-------CCCceeec-ccCCHHHHHHHHHH
Confidence 456677 99999999994 44433333 2221 23455554 33334455554443
No 189
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=74.59 E-value=1.1 Score=43.04 Aligned_cols=19 Identities=21% Similarity=0.027 Sum_probs=16.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|..++ ++||||||||...
T Consensus 259 ~g~~i~----I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFSAI----VVGETASGKTTTL 277 (511)
T ss_dssp TTCCEE----EEESTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 788899 9999999999653
No 190
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=73.41 E-value=0.69 Score=41.55 Aligned_cols=52 Identities=2% Similarity=-0.202 Sum_probs=30.2
Q ss_pred cccccCCCCChhhhcccCcCC---CCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 134 VKTLDETNIPSYILGPMKPKT---TNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g---~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
-.+|++++=.....+.|++.- ...| ...+. ... ..+.++ +.||+|+|||+..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~---------~~~~~----~~~--~~~~iL----L~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFP---------HLFTG----KRT--PWRGIL----LFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCG---------GGSCT----TCC--CCSEEE----EESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCH---------HHHhC----CCC--CCceEE----EECCCCccHHHHH
Confidence 358888876666666665431 1122 11110 112 346678 9999999999643
No 191
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=72.91 E-value=1.4 Score=35.67 Aligned_cols=19 Identities=5% Similarity=-0.118 Sum_probs=15.3
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|+-+. ++||+|||||...
T Consensus 4 ~g~~i~----i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLV----LLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 566677 9999999999743
No 192
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=72.87 E-value=4.9 Score=35.82 Aligned_cols=100 Identities=7% Similarity=-0.031 Sum_probs=49.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHH-HHHHHHHHHHHhcCCCcEEEEEECC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTREL-AQQIQAVISIFSRTMRIRHACLYGG 260 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreL-a~Qi~~~~~~l~~~~~~~~~~~~gg 260 (317)
.|.-++ +.|++|||||... +-++..+..... ..+.+-.++++.-...+ ..++.+.++.+. +
T Consensus 106 ~G~i~~----i~G~~GsGKT~la-~~la~~~~~~~~-~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g----~-------- 167 (324)
T 2z43_A 106 TRTMTE----FFGEFGSGKTQLC-HQLSVNVQLPPE-KGGLSGKAVYIDTEGTFRWERIENMAKALG----L-------- 167 (324)
T ss_dssp TTSEEE----EEESTTSSHHHHH-HHHHHHTTSCGG-GTCCSCEEEEEESSSCCCHHHHHHHHHHTT----C--------
T ss_pred CCcEEE----EECCCCCCHhHHH-HHHHHHHhcccc-cCCCCCeEEEEECCCCCCHHHHHHHHHHhC----C--------
Confidence 566677 9999999999533 333333221100 00113467776543211 344444444432 1
Q ss_pred CCHHHHHHHccCcEEECc---H-------HHHHHHhc-CCCCCCCCchhHHHhh
Q psy10677 261 TSKMYQVILLRILTSATN---T-------SLGIYLQQ-NDAHSPCLSVWRRLQD 303 (317)
Q Consensus 261 ~~~~~~~~~~~~ilv~TP---~-------~l~~~l~~-~~~~~~~lde~d~l~~ 303 (317)
+..+ .+.++.+..| . .+..++.+ ...++.++|....+..
T Consensus 168 -~~~~---~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 168 -DIDN---VMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp -CHHH---HHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred -CHHH---HhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 1111 1112333222 1 33455666 7788899998777764
No 193
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=72.77 E-value=0.85 Score=45.48 Aligned_cols=55 Identities=11% Similarity=0.028 Sum_probs=38.6
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCC----CCCCCccccCCCC-HHHHHHHHHHC
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPS----YPDPSVNHLQGKT-KEEIDSFRKEH 121 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~n----f~~p~~~~i~~~~-~~~i~~~~~~~ 121 (317)
+||+|++ .|++|..+|||| ++|+|+ .+...++. |+ .. ....+ .+.+++.+|.+
T Consensus 302 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidi------p~~~~VI~~~~~yd-~~---~~~~s~~~~~Qr~GRaG 371 (702)
T 2p6r_A 302 HHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNL------PARRVIVRSLYRFD-GY---SKRIKVSEYKQMAGRAG 371 (702)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCC------CBSEEEECCSEEES-SS---EEECCHHHHHHHHTTBS
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCC------CceEEEEcCceeeC-CC---CCcCCHHHHHHHhhhcC
Confidence 8999997 799999999999 999999 56666655 44 00 01112 46677776666
Q ss_pred Cc
Q psy10677 122 NI 123 (317)
Q Consensus 122 ~i 123 (317)
+.
T Consensus 372 R~ 373 (702)
T 2p6r_A 372 RP 373 (702)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 194
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=72.59 E-value=1.5 Score=44.45 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=51.0
Q ss_pred EEEccCCCchhhhhhhcc--------CCCCccc--------eeecCccc---ceec----ccccCCcCCCCCCcccccCC
Q psy10677 41 VEICHEYEKPAKWWDSNN--------GHYPKSV--------RFVLGTAG---FLLS----AVSFSLPFRDDKTSVVTVPS 97 (317)
Q Consensus 41 ~~~~~~~~K~~~L~~ll~--------lhg~~~q--------~F~~g~~~---iLva----arg~~~~lr~~~~d~~~v~n 97 (317)
++++....-.+.|...|. +||++++ +|+++... +|++ +.|+|+ .....++.
T Consensus 576 LIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL------~~a~~VI~ 649 (800)
T 3mwy_W 576 LIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINL------MTADTVVI 649 (800)
T ss_dssp EEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCC------TTCCEEEE
T ss_pred EEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCc------cccceEEE
Confidence 445554444455544443 9999987 99987654 6776 899999 78889999
Q ss_pred CCCCCccccCCCCHHHHHHHHHHCCce
Q psy10677 98 YPDPSVNHLQGKTKEEIDSFRKEHNIT 124 (317)
Q Consensus 98 f~~p~~~~i~~~~~~~i~~~~~~~~i~ 124 (317)
|+.+-.. ..++.+..|.+|++
T Consensus 650 ~D~~wnp------~~~~Qa~gR~~RiG 670 (800)
T 3mwy_W 650 FDSDWNP------QADLQAMARAHRIG 670 (800)
T ss_dssp SSCCSCS------HHHHHHHTTTSCSS
T ss_pred ecCCCCh------hhHHHHHHHHHhcC
Confidence 9877543 57788887777764
No 195
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=72.50 E-value=0.75 Score=40.01 Aligned_cols=19 Identities=5% Similarity=-0.031 Sum_probs=15.5
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.++.++ +.||+|+|||...
T Consensus 50 ~~~~~l----l~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGIL----LYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEE----EESSSSSSHHHHH
T ss_pred CCCeEE----EECCCCCcHHHHH
Confidence 556788 9999999999643
No 196
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=71.77 E-value=1.5 Score=36.55 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +.||+|+|||...
T Consensus 51 ~~~~~l----l~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIY----LWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEE----EECSTTSSHHHHH
T ss_pred CCCeEE----EECCCCCCHHHHH
Confidence 466788 9999999999743
No 197
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=71.55 E-value=1.5 Score=36.75 Aligned_cols=20 Identities=0% Similarity=-0.155 Sum_probs=16.0
Q ss_pred cCcCcccccceeccCCChhH-HHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSV-FTYI 205 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKT-la~~ 205 (317)
.|+-++ +.||||+||| +|..
T Consensus 33 ~g~~il----I~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 33 YGLGVL----ITGDSGVGKSETALE 53 (205)
T ss_dssp TTEEEE----EECCCTTTTHHHHHH
T ss_pred CCEEEE----EECCCCCCHHHHHHH
Confidence 677788 9999999997 4443
No 198
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=71.10 E-value=6.4 Score=34.96 Aligned_cols=52 Identities=4% Similarity=-0.047 Sum_probs=31.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 246 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 246 (317)
.|.=++ +.|++|+||| +|++-+..++..+ +-.+++++- .+-..|+...+...
T Consensus 67 ~G~l~l----i~G~pG~GKT-tl~l~ia~~~a~~-------g~~vl~~sl-E~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVL----IAARPSMGKT-AFALKQAKNMSDN-------DDVVNLHSL-EMGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEE----EECCTTSSHH-HHHHHHHHHHHTT-------TCEEEEEES-SSCHHHHHHHHHHH
T ss_pred CCcEEE----EEeCCCCCHH-HHHHHHHHHHHHc-------CCeEEEEEC-CCCHHHHHHHHHHH
Confidence 566677 9999999999 4555555555432 245666653 23344444444443
No 199
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=70.94 E-value=0.74 Score=39.42 Aligned_cols=15 Identities=0% Similarity=-0.201 Sum_probs=12.8
Q ss_pred cccccceeccCCChhHHHH
Q psy10677 186 FISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 186 vi~~~~~~a~tGsGKTla~ 204 (317)
++ +.||+|+|||...
T Consensus 52 ~l----l~G~~G~GKTtl~ 66 (254)
T 1ixz_A 52 VL----LVGPPGVGKTHLA 66 (254)
T ss_dssp EE----EECCTTSSHHHHH
T ss_pred EE----EECCCCCCHHHHH
Confidence 77 9999999999643
No 200
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=70.78 E-value=1.6 Score=38.20 Aligned_cols=19 Identities=0% Similarity=-0.167 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+.+++ +.||+|+|||...
T Consensus 66 ~~~~vl----l~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMS----FTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEE----EEECTTSSHHHHH
T ss_pred CCceEE----EECCCCCCHHHHH
Confidence 455788 9999999999754
No 201
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.58 E-value=1.6 Score=39.85 Aligned_cols=19 Identities=11% Similarity=0.039 Sum_probs=16.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|..+. ++||||||||...
T Consensus 174 ~G~~i~----ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERVIV----VAGETGSGKTTLM 192 (361)
T ss_dssp TTCCEE----EEESSSSCHHHHH
T ss_pred cCCEEE----EECCCCCCHHHHH
Confidence 888999 9999999999643
No 202
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=70.56 E-value=4.3 Score=33.04 Aligned_cols=33 Identities=9% Similarity=-0.057 Sum_probs=22.0
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
++|+.|||||...+ -++.++... +-+++++.|.
T Consensus 8 i~G~~gsGKTT~ll-~~~~~~~~~-------g~~v~~~~~~ 40 (184)
T 2orw_A 8 ITGPMYSGKTTELL-SFVEIYKLG-------KKKVAVFKPK 40 (184)
T ss_dssp EEESTTSSHHHHHH-HHHHHHHHT-------TCEEEEEEEC
T ss_pred EECCCCCCHHHHHH-HHHHHHHHC-------CCeEEEEeec
Confidence 88999999997754 334444322 3467777776
No 203
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=70.42 E-value=1.7 Score=35.83 Aligned_cols=19 Identities=0% Similarity=-0.062 Sum_probs=14.3
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|+-+. ++||+|||||...
T Consensus 3 ~g~~i~----lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVV----LSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 466677 9999999999754
No 204
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=70.27 E-value=3.5 Score=35.00 Aligned_cols=86 Identities=7% Similarity=-0.007 Sum_probs=46.5
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~ 261 (317)
.|.=++ ++|++|||||.+. +-++.++.. .+-+++++.|...= . . ...+....|+..
T Consensus 11 ~G~i~l----itG~mGsGKTT~l-l~~~~r~~~-------~g~kVli~~~~~d~--r-~--~~~i~srlG~~~------- 66 (223)
T 2b8t_A 11 IGWIEF----ITGPMFAGKTAEL-IRRLHRLEY-------ADVKYLVFKPKIDT--R-S--IRNIQSRTGTSL------- 66 (223)
T ss_dssp CCEEEE----EECSTTSCHHHHH-HHHHHHHHH-------TTCCEEEEEECCCG--G-G--CSSCCCCCCCSS-------
T ss_pred CcEEEE----EECCCCCcHHHHH-HHHHHHHHh-------cCCEEEEEEeccCc--h-H--HHHHHHhcCCCc-------
Confidence 444456 8899999999765 344444443 24567777665320 0 0 001122222211
Q ss_pred CHHHHHHHccCcEEECcHHHHHHHhc----CCCCCCCCchhHH
Q psy10677 262 SKMYQVILLRILTSATNTSLGIYLQQ----NDAHSPCLSVWRR 300 (317)
Q Consensus 262 ~~~~~~~~~~~ilv~TP~~l~~~l~~----~~~~~~~lde~d~ 300 (317)
..+-+.+...+++.+.. +..++..+||+.-
T Consensus 67 ---------~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~ 100 (223)
T 2b8t_A 67 ---------PSVEVESAPEILNYIMSNSFNDETKVIGIDEVQF 100 (223)
T ss_dssp ---------CCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGG
T ss_pred ---------cccccCCHHHHHHHHHHHhhCCCCCEEEEecCcc
Confidence 11234556667776665 3577888888753
No 205
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=69.33 E-value=1.2 Score=40.46 Aligned_cols=19 Identities=0% Similarity=-0.043 Sum_probs=15.3
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..+.++ +.||+|+|||+..
T Consensus 83 ~~~~iL----L~GppGtGKT~la 101 (355)
T 2qp9_X 83 PTSGIL----LYGPPGTGKSYLA 101 (355)
T ss_dssp CCCCEE----EECSTTSCHHHHH
T ss_pred CCceEE----EECCCCCcHHHHH
Confidence 345688 9999999999753
No 206
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=69.25 E-value=1.8 Score=35.46 Aligned_cols=25 Identities=4% Similarity=0.020 Sum_probs=17.8
Q ss_pred cCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
+.++ +.||+|+|||... -.+...+.
T Consensus 55 ~~~~----l~G~~GtGKT~la-~~i~~~~~ 79 (202)
T 2w58_A 55 KGLY----LHGSFGVGKTYLL-AAIANELA 79 (202)
T ss_dssp CEEE----EECSTTSSHHHHH-HHHHHHHH
T ss_pred CeEE----EECCCCCCHHHHH-HHHHHHHH
Confidence 6788 9999999999753 23444444
No 207
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=69.18 E-value=1.7 Score=34.84 Aligned_cols=20 Identities=5% Similarity=-0.200 Sum_probs=16.0
Q ss_pred cCcCcccccceeccCCChhHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
.|.=+. ++||+|||||..+-
T Consensus 8 ~gei~~----l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVV----LIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEE----EECCTTSCHHHHHH
T ss_pred CCEEEE----EECCCCCCHHHHHH
Confidence 566667 89999999997665
No 208
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=68.83 E-value=1.8 Score=34.46 Aligned_cols=18 Identities=6% Similarity=-0.057 Sum_probs=14.0
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
++-++ ++|++|||||...
T Consensus 3 ~~~i~----l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMII----LNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEE----EECCTTSSHHHHH
T ss_pred ceEEE----EECCCCCCHHHHH
Confidence 44566 9999999999753
No 209
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=68.68 E-value=1.7 Score=35.03 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=15.1
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-+. ++||+|||||..
T Consensus 8 ~g~~i~----l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILL----LSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEE----EEECTTSCHHHH
T ss_pred CCeEEE----EECCCCCCHHHH
Confidence 666777 999999999964
No 210
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=68.64 E-value=1 Score=47.01 Aligned_cols=59 Identities=15% Similarity=-0.032 Sum_probs=39.6
Q ss_pred CCCCccc--------eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCc---cccCCCCHHHHHHHHHHCCc
Q psy10677 59 GHYPKSV--------RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSV---NHLQGKTKEEIDSFRKEHNI 123 (317)
Q Consensus 59 lhg~~~q--------~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~---~~i~~~~~~~i~~~~~~~~i 123 (317)
+||+|++ .|++|..+|||| ++|+|+ .+ ..++.+..+.. ....--..++++..++.++.
T Consensus 405 ~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDi------P~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~ 477 (997)
T 4a4z_A 405 HHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNL------PT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 477 (997)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCC------CC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCT
T ss_pred ecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCC------CC-ceEEEeccccccCccCCCCCHHHHhHHhcccccC
Confidence 7999998 899999999999 999999 45 33333332210 00101126788888888775
Q ss_pred e
Q psy10677 124 T 124 (317)
Q Consensus 124 ~ 124 (317)
+
T Consensus 478 G 478 (997)
T 4a4z_A 478 G 478 (997)
T ss_dssp T
T ss_pred C
Confidence 4
No 211
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=68.55 E-value=4.3 Score=33.46 Aligned_cols=34 Identities=12% Similarity=-0.041 Sum_probs=23.6
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTR 233 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptr 233 (317)
++|+.|||||.+.+ -++.+... .+-+++++.|..
T Consensus 13 ~~G~mgsGKTT~ll-~~a~r~~~-------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 13 IVGPMYSGKSEELI-RRIRRAKI-------AKQKIQVFKPEI 46 (191)
T ss_dssp EECSTTSSHHHHHH-HHHHHHHH-------TTCCEEEEEEC-
T ss_pred EECCCCCcHHHHHH-HHHHHHHH-------CCCEEEEEEecc
Confidence 78999999997654 44544443 356788888863
No 212
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=68.55 E-value=1.8 Score=37.43 Aligned_cols=19 Identities=5% Similarity=-0.104 Sum_probs=15.2
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
....++ +.||+|+|||...
T Consensus 63 ~~~~vL----l~G~~GtGKT~la 81 (272)
T 1d2n_A 63 PLVSVL----LEGPPHSGKTALA 81 (272)
T ss_dssp SEEEEE----EECSTTSSHHHHH
T ss_pred CCeEEE----EECCCCCcHHHHH
Confidence 345678 9999999999754
No 213
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=68.35 E-value=1.7 Score=39.19 Aligned_cols=17 Identities=18% Similarity=0.003 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVF 202 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTl 202 (317)
.|..+. ++||||||||.
T Consensus 170 ~g~~v~----i~G~~GsGKTT 186 (330)
T 2pt7_A 170 IGKNVI----VCGGTGSGKTT 186 (330)
T ss_dssp HTCCEE----EEESTTSCHHH
T ss_pred CCCEEE----EECCCCCCHHH
Confidence 788999 99999999997
No 214
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=68.34 E-value=2 Score=36.88 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+..++ +.||+|+|||..
T Consensus 28 ~~~~vl----l~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVL----IIGERGTGKELI 45 (265)
T ss_dssp SCSCEE----EECCTTSCHHHH
T ss_pred CCCCEE----EECCCCCcHHHH
Confidence 567888 999999999964
No 215
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=67.78 E-value=2 Score=35.57 Aligned_cols=19 Identities=0% Similarity=-0.195 Sum_probs=15.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|+=++ ++||+|||||...
T Consensus 7 ~g~~i~----l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIV----LSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEE----EECCTTSCHHHHH
T ss_pred CCcEEE----EECcCCCCHHHHH
Confidence 566677 8999999999643
No 216
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=67.41 E-value=1.9 Score=39.61 Aligned_cols=19 Identities=11% Similarity=-0.020 Sum_probs=16.0
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-++ ++||||||||...
T Consensus 135 ~g~~i~----ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLIL----VTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEE----EECSSSSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 677788 9999999999753
No 217
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=67.39 E-value=2.1 Score=34.95 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=14.9
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.=+. +.||+|||||...
T Consensus 6 ~g~ii~----l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFI----ISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEE----EECCTTSCHHHHH
T ss_pred CCcEEE----EECcCCCCHHHHH
Confidence 455566 8999999999743
No 218
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=67.17 E-value=8.9 Score=36.46 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=38.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT 249 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~ 249 (317)
.|.... +.+-||||||++. .-+. ... +-..|||+|+...|.|.++.++.|...
T Consensus 13 ~~~~~~----l~g~~gs~ka~~~--a~l~--~~~-------~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRL----LGELTGAACATLV--AEIA--ERH-------AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEE----EECCCTTHHHHHH--HHHH--HHS-------SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEE----EeCCCchHHHHHH--HHHH--HHh-------CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 455566 7899999998643 2221 111 224789999999999999999998754
No 219
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=67.04 E-value=3.8 Score=37.51 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=27.7
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRE 234 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptre 234 (317)
.+.+++ +.|+||||||...-. ++..+.. .+.+++|+=|.++
T Consensus 34 ~~~~~~----i~G~~G~GKs~~~~~-~~~~~~~-------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWT----ILAKPGAGKSFTAKM-LLLREYM-------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEE----EECCTTSSHHHHHHH-HHHHHHT-------TTCCEEEEESSCC
T ss_pred ccCceE----EEcCCCCCHHHHHHH-HHHHHHH-------CCCEEEEEeCCcC
Confidence 456788 999999999965433 3333332 2567777777765
No 220
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=66.84 E-value=2.1 Score=35.16 Aligned_cols=19 Identities=0% Similarity=-0.151 Sum_probs=15.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|+.++ ++|++|||||...
T Consensus 24 ~~~~i~----l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIF----LTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEE----EECCTTSCHHHHH
T ss_pred CCCEEE----EEcCCCCCHHHHH
Confidence 566778 9999999999753
No 221
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.78 E-value=1.1 Score=41.69 Aligned_cols=54 Identities=17% Similarity=0.024 Sum_probs=31.7
Q ss_pred CcccccCCCCChhhhcccCcC---CCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPK---TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
|-.+|+|.+=-....+.|++. -+.+| --.+...++ ..+.++ ..||+|+|||+..
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~p---------e~f~~~gi~-----~prGvL----L~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHP---------ELFESLGIA-----QPKGVI----LYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCH---------HHHHHHTCC-----CCCCEE----EESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCH---------HHHHhCCCC-----CCCceE----EeCCCCCCHHHHH
Confidence 335899986444555555443 23334 333333322 335688 9999999999753
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=66.60 E-value=2.3 Score=37.10 Aligned_cols=19 Identities=5% Similarity=-0.085 Sum_probs=15.4
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +.||+|+|||...
T Consensus 49 ~~~~vl----l~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNIL----MIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEE----EECCTTSSHHHHH
T ss_pred CCceEE----EECCCCCCHHHHH
Confidence 456788 9999999999643
No 223
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=66.42 E-value=2.1 Score=33.68 Aligned_cols=19 Identities=5% Similarity=-0.102 Sum_probs=14.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|..++ +.+|+|+|||...
T Consensus 35 ~g~~~~----l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIY----VWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEE----EESSSTTTTCHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 456677 9999999998643
No 224
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=66.32 E-value=2.2 Score=37.26 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.++.++ +.||+|+|||...
T Consensus 53 ~~~~vl----l~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLL----LFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEE----EESSSSSCHHHHH
T ss_pred CCCeEE----EECcCCCCHHHHH
Confidence 456788 9999999999754
No 225
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=66.16 E-value=2.2 Score=36.31 Aligned_cols=19 Identities=5% Similarity=-0.136 Sum_probs=14.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..+.++ +.||+|+|||...
T Consensus 38 ~~~~vl----l~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGAL----LLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEE----EESCTTSSHHHHH
T ss_pred CCceEE----EECCCCCCHHHHH
Confidence 345677 9999999999643
No 226
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=66.14 E-value=2.2 Score=37.58 Aligned_cols=19 Identities=5% Similarity=-0.078 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.++.++ +.||+|+|||+..
T Consensus 48 ~~~~vL----L~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVL----FYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEE----EECSSSSSHHHHH
T ss_pred CCceEE----EECCCCcCHHHHH
Confidence 566788 9999999999753
No 227
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=66.14 E-value=2 Score=39.20 Aligned_cols=19 Identities=11% Similarity=-0.052 Sum_probs=15.0
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-++ ++||||||||...
T Consensus 122 ~~g~i~----I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVL----VTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEE----EECSTTSCHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 445677 9999999999653
No 228
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=66.10 E-value=2.3 Score=34.69 Aligned_cols=19 Identities=0% Similarity=-0.195 Sum_probs=15.3
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. ++||+|||||...
T Consensus 5 ~g~~i~----l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIV----LSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEE----EECSTTSCHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 566677 9999999998643
No 229
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.38 E-value=1 Score=42.39 Aligned_cols=54 Identities=7% Similarity=-0.071 Sum_probs=31.6
Q ss_pred CcccccCCCCChhhhcccCcC---CCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPK---TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
|-.+|+|.+=-....+.|++. -+.+| --.+...++ ..+.++ +.||+|+|||+..
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p---------~~f~~~g~~-----~prGvL----L~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNP---------EIFQRVGIK-----PPKGVL----LYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCH---------HHHHHHCCC-----CCCEEE----EESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCH---------HHHHhCCCC-----CCCeEE----EECCCCCcHHHHH
Confidence 345899987555555555443 12333 222222221 335678 9999999999753
No 230
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=65.33 E-value=2.1 Score=38.53 Aligned_cols=18 Identities=0% Similarity=-0.033 Sum_probs=14.9
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
++.++ +.||+|+|||...
T Consensus 70 ~~~vL----l~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVL----IAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEE----EEESTTSSHHHHH
T ss_pred CCEEE----EECCCCCCHHHHH
Confidence 45788 9999999999753
No 231
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=65.25 E-value=2.2 Score=35.51 Aligned_cols=18 Identities=6% Similarity=-0.049 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|+-++ ++||+|+|||..
T Consensus 18 ~g~~iv----l~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLV----LIGASGVGRSHI 35 (197)
T ss_dssp SCCEEE----EECCTTSSHHHH
T ss_pred CCCEEE----EECcCCCCHHHH
Confidence 677788 999999999964
No 232
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=65.22 E-value=2.6 Score=38.19 Aligned_cols=19 Identities=5% Similarity=-0.034 Sum_probs=15.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +.||+|+|||...
T Consensus 50 ~~~~vl----l~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNIL----LIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEE----EECCTTSSHHHHH
T ss_pred CCCeEE----EECCCCCCHHHHH
Confidence 456788 9999999999854
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=65.09 E-value=2.4 Score=34.86 Aligned_cols=18 Identities=0% Similarity=-0.193 Sum_probs=15.2
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|+-++ ++||+|||||..
T Consensus 11 ~~~~i~----l~G~sGsGKsTl 28 (204)
T 2qor_A 11 RIPPLV----VCGPSGVGKGTL 28 (204)
T ss_dssp CCCCEE----EECCTTSCHHHH
T ss_pred cCCEEE----EECCCCCCHHHH
Confidence 677778 999999999863
No 234
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=65.05 E-value=2.3 Score=36.41 Aligned_cols=18 Identities=6% Similarity=-0.038 Sum_probs=14.5
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+.++ +.||+|+|||...
T Consensus 44 ~~~vl----l~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVL----LVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCC----CBCSSCSSHHHHH
T ss_pred CceEE----EECCCCCcHHHHH
Confidence 44578 9999999999754
No 235
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=64.97 E-value=2.7 Score=34.07 Aligned_cols=13 Identities=0% Similarity=-0.199 Sum_probs=11.1
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.||+|||||...
T Consensus 6 l~GpsGaGKsTl~ 18 (186)
T 3a00_A 6 ISGPSGTGKSTLL 18 (186)
T ss_dssp EESSSSSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 7899999999743
No 236
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=64.81 E-value=2.7 Score=33.21 Aligned_cols=18 Identities=0% Similarity=0.003 Sum_probs=14.3
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+..+. ++|++|||||..
T Consensus 3 ~~~~i~----l~G~~GsGKSTl 20 (173)
T 1kag_A 3 EKRNIF----LVGPMGAGKSTI 20 (173)
T ss_dssp CCCCEE----EECCTTSCHHHH
T ss_pred CCCeEE----EECCCCCCHHHH
Confidence 345667 999999999864
No 237
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=64.77 E-value=2.8 Score=35.11 Aligned_cols=19 Identities=0% Similarity=-0.242 Sum_probs=15.9
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|+-+. +.||+|||||...
T Consensus 22 ~G~~~~----lvGpsGsGKSTLl 40 (218)
T 1z6g_A 22 NIYPLV----ICGPSGVGKGTLI 40 (218)
T ss_dssp CCCCEE----EECSTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 677778 9999999999643
No 238
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=64.68 E-value=2.3 Score=34.07 Aligned_cols=18 Identities=0% Similarity=-0.228 Sum_probs=14.3
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
++.++ ++|++|||||...
T Consensus 5 ~~~i~----l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIY----LIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEE----EECSTTSSHHHHH
T ss_pred CCEEE----EECCCCCCHHHHH
Confidence 45667 9999999999643
No 239
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=64.64 E-value=2.5 Score=34.21 Aligned_cols=18 Identities=0% Similarity=-0.047 Sum_probs=15.2
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+..++ ++|+.|||||..
T Consensus 9 ~~~~I~----l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINIL----ITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEE----EECSTTSSHHHH
T ss_pred CCCEEE----EECCCCCCHHHH
Confidence 566778 999999999975
No 240
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=64.56 E-value=2.1 Score=38.06 Aligned_cols=26 Identities=4% Similarity=-0.005 Sum_probs=18.4
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
+.+++ +.||+|+|||.... .+...+.
T Consensus 152 ~~~ll----l~G~~GtGKT~La~-aia~~~~ 177 (308)
T 2qgz_A 152 QKGLY----LYGDMGIGKSYLLA-AMAHELS 177 (308)
T ss_dssp CCEEE----EECSTTSSHHHHHH-HHHHHHH
T ss_pred CceEE----EECCCCCCHHHHHH-HHHHHHH
Confidence 57888 99999999996443 3344444
No 241
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=64.48 E-value=13 Score=39.43 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=43.1
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCC---C-CCCCCceEEEEcCcHHHHHHHHHHHHHHh
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPK---L-EEGDGPIALVLAPTRELAQQIQAVISIFS 247 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~---~-~~~~~~~alil~PtreLa~Qi~~~~~~l~ 247 (317)
.|.. + +.|.-|||||.+..-=++..|..... . ..-.-.+.|+|+=|+.=|....+.+.+..
T Consensus 16 ~g~~-l----V~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 16 QGER-L----IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SSCE-E----EECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCE-E----EEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 6666 6 89999999999888878877764310 0 01123489999999888877777776554
No 242
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=64.34 E-value=2.8 Score=37.17 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=14.8
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+..++ +.||+|+|||...
T Consensus 37 ~~~ll----l~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIF----IYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEE----EECSSSSSHHHHH
T ss_pred CCeEE----EECCCCCcHHHHH
Confidence 46788 9999999999653
No 243
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=64.03 E-value=1.3 Score=38.53 Aligned_cols=15 Identities=0% Similarity=-0.201 Sum_probs=12.8
Q ss_pred cccccceeccCCChhHHHH
Q psy10677 186 FISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 186 vi~~~~~~a~tGsGKTla~ 204 (317)
++ +.+|+|||||...
T Consensus 76 vl----l~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 76 VL----LVGPPGVGKTHLA 90 (278)
T ss_dssp EE----EECCTTSSHHHHH
T ss_pred EE----EECCCcChHHHHH
Confidence 77 9999999999643
No 244
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=63.92 E-value=2.8 Score=34.02 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=12.9
Q ss_pred CcccccceeccCCChhHHH
Q psy10677 185 KFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla 203 (317)
.++ +.||+|+|||..
T Consensus 40 ~~l----l~G~~G~GKT~l 54 (226)
T 2chg_A 40 HLL----FSGPPGTGKTAT 54 (226)
T ss_dssp CEE----EECSTTSSHHHH
T ss_pred eEE----EECCCCCCHHHH
Confidence 477 999999999964
No 245
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=63.80 E-value=2.7 Score=34.47 Aligned_cols=19 Identities=5% Similarity=-0.055 Sum_probs=15.3
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. ++|++|||||...
T Consensus 28 ~g~~i~----l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVV----VMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEE----EECCTTSCHHHHH
T ss_pred CCcEEE----EECCCCCCHHHHH
Confidence 466677 9999999999753
No 246
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=63.58 E-value=2.6 Score=34.60 Aligned_cols=25 Identities=4% Similarity=-0.336 Sum_probs=18.4
Q ss_pred hccccccccCcCcccccceeccCCChhHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+|.+- .|.-+. +.|++|||||...
T Consensus 14 ~~~~~~--~~~~i~----i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 14 LVPRGS--KTFIIG----ISGVTNSGKTTLA 38 (207)
T ss_dssp CCCCSC--CCEEEE----EEESTTSSHHHHH
T ss_pred ccccCC--CCeEEE----EECCCCCCHHHHH
Confidence 345555 666777 9999999999643
No 247
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=63.48 E-value=2.5 Score=33.09 Aligned_cols=12 Identities=8% Similarity=-0.332 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++|++|||||..
T Consensus 6 l~G~~GsGKsT~ 17 (179)
T 3lw7_A 6 ITGMPGSGKSEF 17 (179)
T ss_dssp EECCTTSCHHHH
T ss_pred EECCCCCCHHHH
Confidence 899999999973
No 248
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.33 E-value=1.3 Score=42.06 Aligned_cols=53 Identities=6% Similarity=-0.044 Sum_probs=32.1
Q ss_pred CcccccCCCCChhhhcccCcC---CCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPK---TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla 203 (317)
|-.+|+|.+=-....+.|++. -+..| -..+...++ ..+.++ +.||+|+|||+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~p---------e~f~~~Gi~-----pprGIL----LyGPPGTGKTlL 259 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSP---------ERFATLGID-----PPKGIL----LYGPPGTGKTLC 259 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCH---------HHHHHHTCC-----CCSEEE----ECSCTTSSHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCH---------HHHHHCCCC-----CCCceE----eeCCCCCcHHHH
Confidence 446899987656666666553 12333 222222221 345678 999999999974
No 249
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=63.09 E-value=2.7 Score=37.78 Aligned_cols=19 Identities=0% Similarity=-0.141 Sum_probs=15.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +.||+|+|||...
T Consensus 43 ~~~~vl----l~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNAL----LYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEE----ECBCTTSSHHHHH
T ss_pred CCCcEE----EECCCCCCHHHHH
Confidence 566788 9999999999653
No 250
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=63.02 E-value=2.6 Score=33.77 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=13.7
Q ss_pred CcCcccccceeccCCChhHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla 203 (317)
|.-++ +.|+.|||||..
T Consensus 3 ~~~I~----i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVV----VTGVPGVGSTTS 19 (192)
T ss_dssp CCEEE----EECCTTSCHHHH
T ss_pred CeEEE----EECCCCCCHHHH
Confidence 45566 899999999974
No 251
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=62.93 E-value=2.2 Score=38.78 Aligned_cols=16 Identities=6% Similarity=-0.054 Sum_probs=12.9
Q ss_pred cCcccccceeccCCChhHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla 203 (317)
+-++ ++||||||||..
T Consensus 41 ~lIv----I~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLV----LMGATGTGKSRL 56 (339)
T ss_dssp EEEE----EECSTTSSHHHH
T ss_pred ceEE----EECCCCCCHHHH
Confidence 3466 999999999953
No 252
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=62.76 E-value=3.1 Score=36.88 Aligned_cols=19 Identities=0% Similarity=0.015 Sum_probs=16.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +.|++|+|||...
T Consensus 24 ~~~~vL----i~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVL----IHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEE----EESCTTSCHHHHH
T ss_pred CCCcEE----EECCCCchHHHHH
Confidence 667888 9999999999753
No 253
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=62.75 E-value=2.7 Score=33.42 Aligned_cols=19 Identities=5% Similarity=-0.073 Sum_probs=15.0
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. ++|++|||||...
T Consensus 7 ~g~~i~----l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYV----LMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEE----EECSTTSCHHHHH
T ss_pred CCcEEE----EEcCCCCCHHHHH
Confidence 456677 9999999998753
No 254
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=62.65 E-value=2.9 Score=34.49 Aligned_cols=22 Identities=0% Similarity=-0.144 Sum_probs=16.1
Q ss_pred ccccccCcCcccccceeccCCChhHHHH
Q psy10677 177 IPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 177 ~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+- .|+=+. +.+|+|||||...
T Consensus 16 ~i~--~Gei~~----l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAA--VGRVVV----LSGPSAVGKSTVV 37 (207)
T ss_dssp -----CCCEEE----EECSTTSSHHHHH
T ss_pred CCC--CCCEEE----EECCCCCCHHHHH
Confidence 445 777778 9999999999754
No 255
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=62.54 E-value=1.9 Score=36.09 Aligned_cols=31 Identities=3% Similarity=-0.186 Sum_probs=23.8
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+.-|..++..+- .|.-+. +.+|+|||||.-+
T Consensus 9 ~~g~~~~l~~i~--~Ge~~~----liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAID--TNTIVF----GLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHH--HCSEEE----EECCTTSSTTHHH
T ss_pred CHhHHHHHHhcc--CCCEEE----EECCCCCCHHHHH
Confidence 444566666666 888888 9999999998754
No 256
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=62.48 E-value=7.2 Score=39.62 Aligned_cols=56 Identities=7% Similarity=-0.048 Sum_probs=32.2
Q ss_pred CcccccCCCCChhhhcccCcC-CCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPK-TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~-g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
|-.+|++.+.-.+..+.|++. -+... .|-+...+. +- ..+.++ +.+|+|+|||+..
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~---------~p~~f~~~g-~~--~~~gvL----l~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVE---------HPDKFLKFG-MT--PSKGVL----FYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTT---------CSGGGSSSC-CC--CCSCCE----EESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhh---------CHHHHHhcC-CC--CCceEE----EecCCCCCchHHH
Confidence 446788887777777777664 12111 111111111 11 345677 9999999999643
No 257
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=62.40 E-value=2.7 Score=34.56 Aligned_cols=16 Identities=0% Similarity=-0.033 Sum_probs=12.8
Q ss_pred cCcccccceeccCCChhHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla 203 (317)
|-++ ++||+|+|||..
T Consensus 2 RpIV----i~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIV----ISGPSGTGKSTL 17 (186)
T ss_dssp CCEE----EECCTTSSHHHH
T ss_pred CEEE----EECCCCCCHHHH
Confidence 3456 999999999863
No 258
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=62.05 E-value=2.8 Score=35.70 Aligned_cols=17 Identities=6% Similarity=-0.033 Sum_probs=13.8
Q ss_pred cCcccccceeccCCChhHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~ 204 (317)
+.++ +.||+|+|||...
T Consensus 46 ~~vl----l~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVL----MVGPPGTGKTLLA 62 (257)
T ss_dssp CEEE----EECCTTSCHHHHH
T ss_pred CeEE----EECcCCCCHHHHH
Confidence 3577 9999999999643
No 259
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=61.87 E-value=2.8 Score=37.81 Aligned_cols=26 Identities=12% Similarity=-0.066 Sum_probs=18.2
Q ss_pred ccccccccCcCcccccceeccCCChhHHHH
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+..++ +|.|.. +-..|+||||||.+.
T Consensus 70 v~~~l--~G~n~t--ifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVL--EGYNGT--IFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHH--TTCCEE--EEEECSTTSSHHHHH
T ss_pred HHHHh--CCCeEE--EEEECCCCCCCceEe
Confidence 34456 787743 116789999999876
No 260
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=61.75 E-value=7.6 Score=36.42 Aligned_cols=37 Identities=5% Similarity=0.029 Sum_probs=25.4
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLA 230 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~ 230 (317)
.|.=++ +.|++|+||| +|++-+..++... +-.+++++
T Consensus 196 ~G~lii----IaG~pG~GKT-tlal~ia~~~a~~-------g~~vl~fS 232 (444)
T 3bgw_A 196 RRNFVL----IAARPSMGKT-AFALKQAKNMSDN-------DDVVNLHS 232 (444)
T ss_dssp SSCEEE----EEECSSSSHH-HHHHHHHHHHHHT-------TCEEEEEC
T ss_pred CCcEEE----EEeCCCCChH-HHHHHHHHHHHHc-------CCEEEEEE
Confidence 566677 9999999999 4556666555542 34567665
No 261
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=61.65 E-value=3.1 Score=35.09 Aligned_cols=19 Identities=16% Similarity=0.055 Sum_probs=16.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|+-+. +.||+|||||.-+
T Consensus 15 ~G~ii~----l~GpsGsGKSTLl 33 (219)
T 1s96_A 15 QGTLYI----VSAPSGAGKSSLI 33 (219)
T ss_dssp CCCEEE----EECCTTSCHHHHH
T ss_pred CCcEEE----EECCCCCCHHHHH
Confidence 677778 9999999999754
No 262
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=61.40 E-value=2 Score=40.30 Aligned_cols=53 Identities=4% Similarity=-0.150 Sum_probs=30.3
Q ss_pred CcccccCCCCChhhhcccCcCC---CCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPKT---TNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g---~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
|-.+|+++.=.....+.|.+.- ...| ...+. ... ..+.++ +.||+|+|||+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~---------~~~~~----~~~--~~~~vL----L~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFP---------HLFTG----KRT--PWRGIL----LFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCT---------TTTSG----GGC--CCSEEE----EECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCH---------HHhhc----cCC--CCceEE----EECCCCCCHHHHH
Confidence 3457888765566666665431 1122 11111 112 346677 9999999999754
No 263
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=60.71 E-value=3.7 Score=34.43 Aligned_cols=20 Identities=0% Similarity=-0.077 Sum_probs=16.6
Q ss_pred cCcCcccccceeccCCChhHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
.|.-+. +.||+|||||.-..
T Consensus 29 ~G~~~~----l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 29 EGTTVL----LTGGTGTGKTTFAA 48 (251)
T ss_dssp TTCEEE----EECCTTSSHHHHHH
T ss_pred CCcEEE----EEeCCCCCHHHHHH
Confidence 777788 99999999997543
No 264
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=60.36 E-value=2.9 Score=38.25 Aligned_cols=27 Identities=7% Similarity=-0.009 Sum_probs=19.1
Q ss_pred hccccccccCcCcccccceeccCCChhHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +|.|+. +-..|+||||||.+.
T Consensus 96 lv~~~l--~G~N~t--ifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQAL--DGYNGT--IMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHH--TTCCEE--EEEEESTTSSHHHHH
T ss_pred HHHHHh--CCCCEE--EEEeCCCCCCccEEe
Confidence 345567 888754 115679999999875
No 265
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=60.29 E-value=3.2 Score=37.32 Aligned_cols=12 Identities=8% Similarity=-0.183 Sum_probs=10.6
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.||||||||..
T Consensus 8 i~GptgsGKt~l 19 (322)
T 3exa_A 8 IVGPTAVGKTKT 19 (322)
T ss_dssp EECCTTSCHHHH
T ss_pred EECCCcCCHHHH
Confidence 899999999954
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=60.25 E-value=2.9 Score=36.00 Aligned_cols=12 Identities=8% Similarity=-0.285 Sum_probs=10.6
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++||+|||||..
T Consensus 6 I~G~~GSGKSTl 17 (253)
T 2ze6_A 6 IYGPTCSGKTDM 17 (253)
T ss_dssp EECCTTSSHHHH
T ss_pred EECCCCcCHHHH
Confidence 899999999863
No 267
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=59.88 E-value=3.4 Score=36.34 Aligned_cols=18 Identities=0% Similarity=-0.210 Sum_probs=14.8
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
...++ +.||+|+|||...
T Consensus 38 ~~~vl----l~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLL----LFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCE----EECCTTCCCHHHH
T ss_pred CCcEE----EECCCCCCHHHHH
Confidence 36788 9999999999653
No 268
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=59.86 E-value=3.1 Score=34.39 Aligned_cols=18 Identities=6% Similarity=-0.189 Sum_probs=14.4
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-+. +.||+|||||..
T Consensus 21 ~g~~v~----I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVA----LSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEE----EECCTTSCTHHH
T ss_pred CCeEEE----EECCCCCCHHHH
Confidence 566666 899999999863
No 269
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=59.26 E-value=3.5 Score=36.96 Aligned_cols=12 Identities=8% Similarity=-0.164 Sum_probs=10.6
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++||||||||..
T Consensus 15 i~GptgsGKt~l 26 (316)
T 3foz_A 15 LMGPTASGKTAL 26 (316)
T ss_dssp EECCTTSCHHHH
T ss_pred EECCCccCHHHH
Confidence 899999999954
No 270
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=59.21 E-value=8 Score=40.90 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=27.4
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTR 233 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptr 233 (317)
+.|..|||||.+.+--+...+... ..+.+.|+|||..
T Consensus 6 V~agAGSGKT~~l~~ri~~ll~~~-----~~~~~il~lVP~q 42 (1166)
T 3u4q_B 6 LVGRSGSGKTKLIINSIQDELRRA-----PFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHC-----TTSSCEEEECCGG
T ss_pred EEeCCCCChHHHHHHHHHHHHHhC-----CCCCcEEEEecCc
Confidence 679999999987766666555542 2346889999976
No 271
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=59.07 E-value=7.6 Score=35.38 Aligned_cols=28 Identities=14% Similarity=0.008 Sum_probs=19.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.|.-+. +.+|+|||||. +++.++..+..
T Consensus 60 ~G~i~~----I~GppGsGKST-Lal~la~~~~~ 87 (356)
T 3hr8_A 60 RGRIVE----IFGQESSGKTT-LALHAIAEAQK 87 (356)
T ss_dssp TTEEEE----EEESTTSSHHH-HHHHHHHHHHH
T ss_pred CCcEEE----EECCCCCCHHH-HHHHHHHHHHh
Confidence 456667 99999999994 55566555543
No 272
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=58.97 E-value=2.5 Score=37.60 Aligned_cols=21 Identities=0% Similarity=-0.140 Sum_probs=17.5
Q ss_pred ccccccCcCcccccceeccCCChhHHH
Q psy10677 177 IPLNFQAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 177 ~~l~~~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+. .|.+++ +.||+|+|||..
T Consensus 42 ~l~--~~~~vl----l~G~pGtGKT~l 62 (331)
T 2r44_A 42 GIC--TGGHIL----LEGVPGLAKTLS 62 (331)
T ss_dssp HHH--HTCCEE----EESCCCHHHHHH
T ss_pred HHH--cCCeEE----EECCCCCcHHHH
Confidence 445 688999 999999999964
No 273
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=58.71 E-value=3.8 Score=34.90 Aligned_cols=18 Identities=6% Similarity=-0.175 Sum_probs=15.3
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-+. +.||+|||||.-
T Consensus 30 ~Ge~~~----iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVS----IMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEE----EECSTTSSHHHH
T ss_pred CCCEEE----EECCCCCcHHHH
Confidence 677778 999999999953
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=58.66 E-value=3.5 Score=32.37 Aligned_cols=13 Identities=0% Similarity=-0.371 Sum_probs=11.1
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
++|+.|||||...
T Consensus 6 l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 6 LEGPDCCFKSTVA 18 (173)
T ss_dssp EECSSSSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8999999999743
No 275
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=58.51 E-value=2.9 Score=33.49 Aligned_cols=18 Identities=6% Similarity=-0.169 Sum_probs=14.7
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-++ ++|+.|||||..
T Consensus 3 ~g~~I~----l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVI----FLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEE----EECCTTSCHHHH
T ss_pred CCeEEE----EECCCCCCHHHH
Confidence 456677 999999999974
No 276
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=58.26 E-value=3.6 Score=33.65 Aligned_cols=18 Identities=6% Similarity=-0.226 Sum_probs=15.2
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-+. +.|++|||||..
T Consensus 24 ~g~~i~----l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIW----VTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEE----EECSTTSSHHHH
T ss_pred CCeEEE----EECCCCCCHHHH
Confidence 567777 999999999964
No 277
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=58.18 E-value=3.5 Score=33.81 Aligned_cols=19 Identities=5% Similarity=-0.244 Sum_probs=14.0
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||...
T Consensus 5 ~~~~i~----i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIG----IAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEE----EEESTTSSHHHHH
T ss_pred CcEEEE----EECCCCCCHHHHH
Confidence 344455 8899999999743
No 278
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.90 E-value=5.7 Score=35.38 Aligned_cols=13 Identities=0% Similarity=-0.289 Sum_probs=11.5
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.||+|+|||...
T Consensus 41 l~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 41 LYGPNGTGKKTRC 53 (354)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 9999999999754
No 279
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=57.78 E-value=4.9 Score=36.53 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=20.1
Q ss_pred hccccccccCcCcccccceeccCCChhHHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
.+..++ +|.|.. +-..|+||||||.+..
T Consensus 76 lv~~~l--~G~n~t--ifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSL--DGYNVC--IFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGG--GTCCEE--EEEECCTTSSHHHHHH
T ss_pred HHHHhc--CCceeE--EEEECCCCCCCcEecc
Confidence 556677 888754 1156899999998763
No 280
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=57.67 E-value=4.8 Score=33.90 Aligned_cols=23 Identities=4% Similarity=0.015 Sum_probs=17.1
Q ss_pred CcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 185 KFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
.++ +.||.|+|||... ..++..+
T Consensus 60 ~il----i~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 60 CLV----FCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp EEE----EESCGGGCHHHHH-HHHHHHH
T ss_pred EEE----EECCCCCCHHHHH-HHHHHHh
Confidence 477 8999999999643 5556655
No 281
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=57.56 E-value=4.2 Score=36.88 Aligned_cols=19 Identities=5% Similarity=-0.001 Sum_probs=15.3
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +.||+|+|||...
T Consensus 71 ~~~~il----l~Gp~GtGKT~la 89 (376)
T 1um8_A 71 SKSNIL----LIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCEE----EECCTTSSHHHHH
T ss_pred CCCCEE----EECCCCCCHHHHH
Confidence 355788 9999999999653
No 282
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=57.30 E-value=4.4 Score=35.97 Aligned_cols=17 Identities=0% Similarity=-0.152 Sum_probs=14.1
Q ss_pred cCcccccceeccCCChhHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~ 204 (317)
..++ +.||+|+|||...
T Consensus 56 ~~vl----l~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHIL----FSGPAGLGKTTLA 72 (338)
T ss_dssp CCEE----EECSTTSSHHHHH
T ss_pred CeEE----EECcCCCCHHHHH
Confidence 4677 9999999999753
No 283
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=57.21 E-value=3.1 Score=39.88 Aligned_cols=25 Identities=4% Similarity=-0.106 Sum_probs=20.0
Q ss_pred hhccccccccCcCcccccceeccCCChhHHH
Q psy10677 173 KNWTIPLNFQAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 173 ~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+.-.+. .|.+++ +.||+|+|||..
T Consensus 33 ~l~~al~--~~~~VL----L~GpPGtGKT~L 57 (500)
T 3nbx_X 33 LCLLAAL--SGESVF----LLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHH--HTCEEE----EECCSSSSHHHH
T ss_pred HHHHHHh--cCCeeE----eecCchHHHHHH
Confidence 3444556 888999 999999999974
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=57.17 E-value=3.8 Score=32.40 Aligned_cols=12 Identities=8% Similarity=-0.349 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++|++|||||..
T Consensus 7 i~G~~GsGKST~ 18 (181)
T 1ly1_A 7 TIGCPGSGKSTW 18 (181)
T ss_dssp EECCTTSSHHHH
T ss_pred EecCCCCCHHHH
Confidence 899999999874
No 285
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=57.11 E-value=9 Score=34.97 Aligned_cols=28 Identities=11% Similarity=-0.020 Sum_probs=20.5
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.|.-++ +.|++||||| ++++.++..+..
T Consensus 73 ~G~li~----I~G~pGsGKT-tlal~la~~~~~ 100 (366)
T 1xp8_A 73 RGRITE----IYGPESGGKT-TLALAIVAQAQK 100 (366)
T ss_dssp TTSEEE----EEESTTSSHH-HHHHHHHHHHHH
T ss_pred CCcEEE----EEcCCCCChH-HHHHHHHHHHHH
Confidence 566677 8999999999 455666665543
No 286
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=57.05 E-value=3.1 Score=34.93 Aligned_cols=19 Identities=0% Similarity=-0.143 Sum_probs=11.5
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.=+. +.||+|||||...
T Consensus 26 ~G~ii~----l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILV----LSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEE----EECSCC----CHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 566677 8999999999653
No 287
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.00 E-value=2.3 Score=39.92 Aligned_cols=53 Identities=9% Similarity=0.033 Sum_probs=30.9
Q ss_pred CcccccCCCCChhhhcccCcC---CCCCCCcCCCCCCCCchhhhhccccccccCcCcccccceeccCCChhHHH
Q psy10677 133 PVKTLDETNIPSYILGPMKPK---TTNNENNHNKNKKCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~~~~~~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla 203 (317)
|-.+|+|.+=-....+.|++. -+.+| --.+...++ ..+.++ ..||+|+|||+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~p---------e~f~~~Gi~-----~prGvL----LyGPPGTGKTlL 232 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHP---------ELYEEMGIK-----PPKGVI----LYGAPGTGKTLL 232 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCC---------HHHHHHTCC-----CCSEEE----EESSTTTTHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCH---------HHHHhCCCC-----CCCCCc----eECCCCchHHHH
Confidence 446899986444444444442 13344 333333322 235678 999999999974
No 288
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=56.73 E-value=4 Score=35.84 Aligned_cols=16 Identities=6% Similarity=-0.205 Sum_probs=13.0
Q ss_pred cCcccccceeccCCChhHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla 203 (317)
+.++ +.||+|+|||..
T Consensus 37 ~~lL----l~GppGtGKT~l 52 (293)
T 3t15_A 37 LILG----IWGGKGQGKSFQ 52 (293)
T ss_dssp SEEE----EEECTTSCHHHH
T ss_pred eEEE----EECCCCCCHHHH
Confidence 4456 889999999974
No 289
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=56.67 E-value=9.3 Score=34.57 Aligned_cols=26 Identities=12% Similarity=-0.028 Sum_probs=17.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
.|.-++ +.|++|||||.-. +-++..+
T Consensus 60 ~G~iv~----I~G~pGsGKTtLa-l~la~~~ 85 (349)
T 2zr9_A 60 RGRVIE----IYGPESSGKTTVA-LHAVANA 85 (349)
T ss_dssp TTSEEE----EEESTTSSHHHHH-HHHHHHH
T ss_pred CCeEEE----EECCCCCCHHHHH-HHHHHHH
Confidence 566677 9999999999543 3333333
No 290
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=56.64 E-value=4.8 Score=33.15 Aligned_cols=18 Identities=11% Similarity=-0.081 Sum_probs=15.0
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-+. +.||+|||||..
T Consensus 22 ~G~~~~----i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIA----LTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEE----EECSTTSSHHHH
T ss_pred CCCEEE----EEcCCCCCHHHH
Confidence 667777 999999999953
No 291
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=56.51 E-value=3.4 Score=33.34 Aligned_cols=13 Identities=8% Similarity=-0.151 Sum_probs=11.2
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+++|+|||||...
T Consensus 7 l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 7 ITGPAGVGKSTTC 19 (189)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCcHHHHH
Confidence 8899999999743
No 292
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=56.24 E-value=4.8 Score=36.61 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=20.4
Q ss_pred hccccccccCcCcccccceeccCCChhHHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
.+..++ +|.|+. +-..|+||||||.+..
T Consensus 77 lv~~~l--~G~n~t--ifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSL--DGYNVC--IFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGG--TTCEEE--EEEECSTTSSHHHHHH
T ss_pred HHHHHH--CCccee--EEEeCCCCCCCceEeC
Confidence 556678 888764 1156899999998863
No 293
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=56.00 E-value=9.8 Score=34.58 Aligned_cols=27 Identities=7% Similarity=-0.135 Sum_probs=18.7
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
.|+-++ +.|++|||||... +-++..+.
T Consensus 62 ~G~ii~----I~G~pGsGKTtLa-l~la~~~~ 88 (356)
T 1u94_A 62 MGRIVE----IYGPESSGKTTLT-LQVIAAAQ 88 (356)
T ss_dssp TTSEEE----EECSTTSSHHHHH-HHHHHHHH
T ss_pred CCeEEE----EECCCCCCHHHHH-HHHHHHHH
Confidence 566677 9999999999643 44444443
No 294
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=55.95 E-value=9.5 Score=35.61 Aligned_cols=39 Identities=10% Similarity=-0.025 Sum_probs=25.4
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcC
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAP 231 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~P 231 (317)
.|.=++ +.|++|+||| +|++-+...+... .+-.++++..
T Consensus 199 ~G~l~i----i~G~pg~GKT-~lal~ia~~~a~~------~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNI----IAARPAMGKT-AFALTIAQNAALK------EGVGVGIYSL 237 (444)
T ss_dssp TTCEEE----EEECTTSCHH-HHHHHHHHHHHHT------TCCCEEEEES
T ss_pred CCcEEE----EEeCCCCCHH-HHHHHHHHHHHHh------CCCeEEEEEC
Confidence 566667 8999999999 5666666555432 1334666553
No 295
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=55.78 E-value=11 Score=34.07 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=28.9
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.|.=++ +.|++|+||| +|++-+..++... +-.+++++. ..-+.|+...+
T Consensus 45 ~G~Lii----IaG~pG~GKT-t~al~ia~~~a~~-------g~~Vl~fSl-Ems~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVI----IGARPSMGKT-SLMMNMVLSALND-------DRGVAVFSL-EMSAEQLALRA 93 (338)
T ss_dssp TTCEEE----EEECTTSCHH-HHHHHHHHHHHHT-------TCEEEEEES-SSCHHHHHHHH
T ss_pred CCcEEE----EEeCCCCCHH-HHHHHHHHHHHHc-------CCeEEEEeC-CCCHHHHHHHH
Confidence 455566 8999999999 4555555555442 345666653 22234444443
No 296
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=55.41 E-value=15 Score=34.23 Aligned_cols=13 Identities=15% Similarity=-0.232 Sum_probs=10.9
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+++++|+|||...
T Consensus 103 i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 103 LVGLQGSGKTTTA 115 (425)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 7799999999643
No 297
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=55.34 E-value=4.2 Score=38.19 Aligned_cols=19 Identities=0% Similarity=-0.085 Sum_probs=15.4
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.++.++ +.||+|+|||...
T Consensus 62 ~~~~iL----l~GppGtGKT~la 80 (456)
T 2c9o_A 62 AGRAVL----LAGPPGTGKTALA 80 (456)
T ss_dssp TTCEEE----EECCTTSSHHHHH
T ss_pred CCCeEE----EECCCcCCHHHHH
Confidence 446788 9999999999754
No 298
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=55.32 E-value=4.8 Score=33.20 Aligned_cols=19 Identities=11% Similarity=-0.246 Sum_probs=15.4
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.=+. +.+|+|||||...
T Consensus 24 ~G~~~~----l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITE----VFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEE----EEESTTSSHHHHH
T ss_pred CCcEEE----EECCCCCCHHHHH
Confidence 666677 9999999999644
No 299
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=55.16 E-value=4.5 Score=32.78 Aligned_cols=13 Identities=8% Similarity=-0.181 Sum_probs=11.3
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.||+|||||...
T Consensus 5 l~G~nGsGKTTLl 17 (178)
T 1ye8_A 5 ITGEPGVGKTTLV 17 (178)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 7899999999754
No 300
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=55.15 E-value=4.5 Score=36.59 Aligned_cols=19 Identities=5% Similarity=-0.071 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..+.++ +.||+|+|||...
T Consensus 116 ~~~~vL----l~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGIL----LFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEE----EESSTTSSHHHHH
T ss_pred CCceEE----EECCCCCCHHHHH
Confidence 456788 9999999999754
No 301
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=54.95 E-value=5 Score=32.86 Aligned_cols=17 Identities=6% Similarity=-0.072 Sum_probs=15.4
Q ss_pred cCcCcccccceeccCCChhHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVF 202 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTl 202 (317)
.|+-++ ++|++|+|||.
T Consensus 15 ~G~gvl----i~G~SGaGKSt 31 (181)
T 3tqf_A 15 DKMGVL----ITGEANIGKSE 31 (181)
T ss_dssp TTEEEE----EEESSSSSHHH
T ss_pred CCEEEE----EEcCCCCCHHH
Confidence 788899 99999999994
No 302
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=54.73 E-value=4.2 Score=34.29 Aligned_cols=18 Identities=6% Similarity=-0.195 Sum_probs=15.1
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-+. +.||+|||||.-
T Consensus 29 ~Ge~~~----iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVS----IIGASGSGKSTL 46 (224)
T ss_dssp TTCEEE----EEECTTSCHHHH
T ss_pred CCCEEE----EECCCCCCHHHH
Confidence 677777 899999999964
No 303
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=54.67 E-value=8.1 Score=39.23 Aligned_cols=18 Identities=6% Similarity=-0.042 Sum_probs=15.5
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.++.++ +.+|+|+|||..
T Consensus 510 ~~~~vL----L~GppGtGKT~L 527 (806)
T 1ypw_A 510 PSKGVL----FYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCC----CBCCTTSSHHHH
T ss_pred CCceeE----EECCCCCCHHHH
Confidence 567788 999999999974
No 304
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=54.36 E-value=4.8 Score=34.72 Aligned_cols=19 Identities=5% Similarity=-0.080 Sum_probs=16.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|+.+. ++|++|||||...
T Consensus 47 ~g~~i~----l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 47 NGRSMY----LVGMMGSGKTTVG 65 (250)
T ss_dssp TTCCEE----EECSTTSCHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 488999 9999999999764
No 305
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.31 E-value=4.7 Score=37.48 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=19.8
Q ss_pred hccccccccCcCcccccceeccCCChhHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +|.|+. +-..|+||||||.+.
T Consensus 132 lv~~~l--~G~N~t--ifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSL--DGYNVA--IFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHH--TTCCEE--EEEESCTTSSHHHHH
T ss_pred HHHHHh--CCcceE--EEEECCCCCCCceEe
Confidence 456667 888764 115679999999886
No 306
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=54.26 E-value=4.7 Score=32.16 Aligned_cols=13 Identities=8% Similarity=-0.353 Sum_probs=11.3
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.+|+|||||..+
T Consensus 31 i~G~NGsGKStll 43 (182)
T 3kta_A 31 IVGANGSGKSNIG 43 (182)
T ss_dssp EEECTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 7899999999754
No 307
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=54.03 E-value=4.4 Score=32.51 Aligned_cols=17 Identities=6% Similarity=-0.052 Sum_probs=13.7
Q ss_pred CcCcccccceeccCCChhHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla 203 (317)
+.-++ ++|+.|||||..
T Consensus 5 ~~~I~----l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALII----VTGHPATGKTTL 21 (193)
T ss_dssp CEEEE----EEESTTSSHHHH
T ss_pred CeEEE----EECCCCCCHHHH
Confidence 44566 899999999974
No 308
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=53.97 E-value=4.6 Score=35.22 Aligned_cols=16 Identities=6% Similarity=-0.118 Sum_probs=13.4
Q ss_pred CcccccceeccCCChhHHHH
Q psy10677 185 KFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla~ 204 (317)
.++ +.||+|+|||...
T Consensus 49 ~~l----l~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFL----FLGPTGVGKTELA 64 (311)
T ss_dssp EEE----EESCSSSSHHHHH
T ss_pred EEE----EECCCCcCHHHHH
Confidence 567 9999999999754
No 309
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=53.96 E-value=5.8 Score=32.48 Aligned_cols=19 Identities=5% Similarity=-0.296 Sum_probs=15.2
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-++ +.|++|||||...
T Consensus 19 ~G~~~~----i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 19 PGVLTQ----VYGPYASGKTTLA 37 (220)
T ss_dssp TTSEEE----EECSTTSSHHHHH
T ss_pred CCEEEE----EECCCCCCHHHHH
Confidence 566677 9999999999643
No 310
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=53.95 E-value=5 Score=34.13 Aligned_cols=19 Identities=5% Similarity=-0.097 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-.
T Consensus 30 ~Ge~~~----i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVA----VVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEE----EECSTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 777778 9999999998643
No 311
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=53.90 E-value=3.2 Score=36.93 Aligned_cols=18 Identities=0% Similarity=-0.145 Sum_probs=14.5
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+..++ +.||+|+|||...
T Consensus 45 ~~~vL----l~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVL----VFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEE----EECCGGGCTTHHH
T ss_pred CceEE----EECCCCccHHHHH
Confidence 44688 9999999999643
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=53.81 E-value=4.3 Score=32.48 Aligned_cols=13 Identities=0% Similarity=-0.322 Sum_probs=11.2
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
++|++|||||...
T Consensus 8 l~G~~GsGKsT~a 20 (196)
T 1tev_A 8 VLGGPGAGKGTQC 20 (196)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8999999998753
No 313
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=53.75 E-value=5 Score=31.41 Aligned_cols=12 Identities=8% Similarity=-0.247 Sum_probs=10.8
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.+|+|||||..
T Consensus 28 I~G~NGsGKSti 39 (149)
T 1f2t_A 28 IIGQNGSGKSSL 39 (149)
T ss_dssp EECCTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 789999999975
No 314
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=53.69 E-value=4.4 Score=36.79 Aligned_cols=26 Identities=8% Similarity=0.003 Sum_probs=18.0
Q ss_pred ccccccccCcCcccccceeccCCChhHHHH
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+..++ +|.|.. +-..++||||||.+.
T Consensus 76 v~~~l--~G~n~t--ifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFF--EGFNAT--VFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHH--TTCCEE--EEEESSTTSSHHHHH
T ss_pred HHHHH--hhcCee--EEEecccCCCceEee
Confidence 34556 787754 115679999999875
No 315
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=53.60 E-value=5.2 Score=36.97 Aligned_cols=25 Identities=8% Similarity=-0.013 Sum_probs=17.7
Q ss_pred cccccccCcCcccccceeccCCChhHHHH
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..++ +|.|.. +-..|+||||||.+.
T Consensus 92 ~~~l--~G~N~t--ifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLL--EGQNAS--VLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHT--TTCCEE--EEEESCTTSSHHHHH
T ss_pred HHhh--cCceee--EeeecCCCCCCCeEe
Confidence 3456 787754 115689999999876
No 316
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=53.59 E-value=4.5 Score=32.24 Aligned_cols=18 Identities=0% Similarity=-0.195 Sum_probs=14.7
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-+. ++++.|||||..
T Consensus 4 ~g~~i~----l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVW----LTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEE----EECCTTSSHHHH
T ss_pred CCcEEE----EECCCCCCHHHH
Confidence 466677 899999999874
No 317
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=53.55 E-value=4.5 Score=37.02 Aligned_cols=19 Identities=5% Similarity=-0.024 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.++.++ +.||+|+|||...
T Consensus 147 ~~~~vL----L~GppGtGKT~la 165 (389)
T 3vfd_A 147 PARGLL----LFGPPGNGKTMLA 165 (389)
T ss_dssp CCSEEE----EESSTTSCHHHHH
T ss_pred CCceEE----EECCCCCCHHHHH
Confidence 456788 9999999999743
No 318
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=53.46 E-value=5.8 Score=33.29 Aligned_cols=19 Identities=0% Similarity=-0.237 Sum_probs=16.0
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-+
T Consensus 34 ~Ge~~~----iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVN----FHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 777788 9999999999643
No 319
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=53.38 E-value=4.6 Score=36.82 Aligned_cols=27 Identities=7% Similarity=-0.086 Sum_probs=18.7
Q ss_pred hccccccccCcCcccccceeccCCChhHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +|.|.. +-..|+||||||.+.
T Consensus 97 lv~~~l--~G~n~t--ifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFL--NGYNCT--VLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHT--TTCCEE--EEEECCTTSSHHHHH
T ss_pred HHHHHh--CCCceE--EEEeCCCCCCceeee
Confidence 344566 787754 116689999999875
No 320
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=53.31 E-value=4.5 Score=37.08 Aligned_cols=25 Identities=16% Similarity=-0.028 Sum_probs=17.8
Q ss_pred cccccccCcCcccccceeccCCChhHHHH
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..++ +|.|.. +-..|+||||||.+.
T Consensus 78 ~~~l--~G~n~t--ifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVL--AGYNGT--IFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHH--TTCCEE--EEEECSTTSSHHHHH
T ss_pred HHHh--CCCceE--EEeecCCCCCCceEE
Confidence 4456 787754 116689999999885
No 321
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=53.31 E-value=4.7 Score=36.85 Aligned_cols=27 Identities=7% Similarity=-0.009 Sum_probs=19.0
Q ss_pred hccccccccCcCcccccceeccCCChhHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +|.|.. +-..++||||||.+.
T Consensus 95 lv~~~l--~G~N~t--IfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQAL--DGYNGT--IMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHH--TTCCEE--EEEEESTTSSHHHHH
T ss_pred HHHHHh--CCCceE--EEEECCCCCCCceEe
Confidence 445567 788764 115689999999885
No 322
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=53.23 E-value=5.3 Score=35.69 Aligned_cols=19 Identities=0% Similarity=-0.083 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +.||+|+|||...
T Consensus 44 ~~~~vl----i~G~~G~GKTtl~ 62 (386)
T 2qby_A 44 KPNNIF----IYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCEE----EEECTTSSHHHHH
T ss_pred CCCeEE----EECCCCCCHHHHH
Confidence 466788 9999999999753
No 323
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=53.20 E-value=4.7 Score=33.00 Aligned_cols=15 Identities=0% Similarity=-0.077 Sum_probs=12.8
Q ss_pred CcccccceeccCCChhHHH
Q psy10677 185 KFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla 203 (317)
.++ +.||+|+|||..
T Consensus 47 ~~l----l~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYL----FSGTRGVGKTSI 61 (250)
T ss_dssp EEE----EECSTTSCHHHH
T ss_pred EEE----EECCCCCCHHHH
Confidence 467 999999999964
No 324
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=53.11 E-value=5.3 Score=32.91 Aligned_cols=29 Identities=7% Similarity=-0.142 Sum_probs=21.0
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla 203 (317)
++.+... +.+. .|.-++ ++|+.|||||..
T Consensus 13 ~~~~r~~-~~~~--~~~~i~----~~G~~GsGKsT~ 41 (211)
T 1m7g_A 13 TRSERTE-LRNQ--RGLTIW----LTGLSASGKSTL 41 (211)
T ss_dssp CHHHHHH-HHTS--SCEEEE----EECSTTSSHHHH
T ss_pred CHHHhhc-ccCC--CCCEEE----EECCCCCCHHHH
Confidence 5555544 3445 777788 999999999864
No 325
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=53.05 E-value=5.4 Score=36.68 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=19.4
Q ss_pred hccccccccCcCcccccceeccCCChhHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +|.|.. +-..|+||||||.+.
T Consensus 107 lv~~~l--~G~N~t--ifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSAL--DGYPVC--IFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGG--GTCCEE--EEEECSTTSSHHHHH
T ss_pred HHHHhc--CCCceE--EEEeCCCCCCCceEe
Confidence 456677 888754 115679999999875
No 326
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=53.05 E-value=4.4 Score=36.77 Aligned_cols=12 Identities=8% Similarity=-0.216 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++||||||||..
T Consensus 12 I~GptgSGKTtl 23 (340)
T 3d3q_A 12 IVGPTASGKTEL 23 (340)
T ss_dssp EECSTTSSHHHH
T ss_pred EECCCcCcHHHH
Confidence 899999999953
No 327
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=52.96 E-value=5.6 Score=32.60 Aligned_cols=13 Identities=0% Similarity=-0.276 Sum_probs=11.4
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.+|+|+|||...
T Consensus 6 i~G~nG~GKTTll 18 (189)
T 2i3b_A 6 LTGPPGVGKTTLI 18 (189)
T ss_dssp EESCCSSCHHHHH
T ss_pred EECCCCChHHHHH
Confidence 8899999999754
No 328
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=52.74 E-value=13 Score=29.90 Aligned_cols=20 Identities=5% Similarity=-0.243 Sum_probs=13.5
Q ss_pred eeccCCChhHHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l 212 (317)
+.|++|||||.. +--++..+
T Consensus 9 i~G~sGsGKTTl-~~~L~~~l 28 (169)
T 1xjc_A 9 VVGYKHSGKTTL-MEKWVAAA 28 (169)
T ss_dssp EECCTTSSHHHH-HHHHHHHH
T ss_pred EECCCCCCHHHH-HHHHHHhh
Confidence 889999999863 33344444
No 329
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=52.72 E-value=4.8 Score=36.96 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=17.6
Q ss_pred cccccccCcCcccccceeccCCChhHHHH
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..++ +|.|.. +-..|+||||||.+.
T Consensus 95 ~~~l--~G~n~t--ifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 95 DSVL--QGFNGT--IFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHH--TTCCEE--EEEEESTTSSHHHHH
T ss_pred HHHh--CCCeee--EEeecCCCCCCCEeE
Confidence 4456 787754 115679999999875
No 330
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=52.70 E-value=4.8 Score=34.72 Aligned_cols=19 Identities=5% Similarity=-0.171 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-.
T Consensus 32 ~Ge~~~----liG~nGsGKSTLl 50 (257)
T 1g6h_A 32 KGDVTL----IIGPNGSGKSTLI 50 (257)
T ss_dssp TTCEEE----EECSTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 777777 9999999999643
No 331
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=52.67 E-value=4.6 Score=37.63 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=19.8
Q ss_pred hccccccccCcCcccccceeccCCChhHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +|.|+. +-..|+||||||.+.
T Consensus 130 lv~~~l--~G~n~t--ifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSAL--DGYNIC--IFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHH--TTCCEE--EEEESSTTSSHHHHH
T ss_pred HHHHHH--CCCceE--EEEecCCCCCCeeEe
Confidence 556677 888764 115679999999885
No 332
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=52.62 E-value=4.7 Score=36.78 Aligned_cols=27 Identities=7% Similarity=-0.006 Sum_probs=18.9
Q ss_pred hccccccccCcCcccccceeccCCChhHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +|.|.. +-..|+||||||.+.
T Consensus 84 lv~~~l--~G~n~t--ifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAF--DGYNAC--IFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHH--TTCCEE--EEEEECTTSSHHHHH
T ss_pred HHHHHh--CCceeE--EEeeCCCCCCCceEE
Confidence 345567 788764 115689999999876
No 333
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=52.54 E-value=5.1 Score=33.24 Aligned_cols=18 Identities=11% Similarity=-0.038 Sum_probs=14.4
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+..++ +.|+.|||||..
T Consensus 4 ~~~~I~----l~G~~GsGKsT~ 21 (217)
T 3be4_A 4 KKHNLI----LIGAPGSGKGTQ 21 (217)
T ss_dssp GCCEEE----EEECTTSSHHHH
T ss_pred CceEEE----EECCCCCCHHHH
Confidence 455677 899999999964
No 334
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=52.45 E-value=4.5 Score=36.41 Aligned_cols=12 Identities=0% Similarity=-0.255 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++||||||||..
T Consensus 10 i~GptGsGKTtl 21 (323)
T 3crm_A 10 LMGPTAAGKTDL 21 (323)
T ss_dssp EECCTTSCHHHH
T ss_pred EECCCCCCHHHH
Confidence 899999999963
No 335
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=52.39 E-value=5.1 Score=36.00 Aligned_cols=16 Identities=6% Similarity=-0.062 Sum_probs=13.8
Q ss_pred CcccccceeccCCChhHHHH
Q psy10677 185 KFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla~ 204 (317)
.++ +.||+|+|||...
T Consensus 46 ~~l----i~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RAT----LLGRPGTGKTVTL 61 (389)
T ss_dssp EEE----EECCTTSSHHHHH
T ss_pred eEE----EECCCCCCHHHHH
Confidence 678 9999999999754
No 336
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=52.33 E-value=5 Score=36.55 Aligned_cols=13 Identities=0% Similarity=-0.087 Sum_probs=11.7
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
++||||||||..+
T Consensus 28 i~G~NGaGKTTll 40 (365)
T 3qf7_A 28 VEGPNGAGKSSLF 40 (365)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8999999999765
No 337
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.07 E-value=5.1 Score=37.56 Aligned_cols=18 Identities=0% Similarity=-0.042 Sum_probs=14.4
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+.++ +.||+|+|||+..
T Consensus 206 prGiL----L~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVL----LYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEE----EESCTTTTHHHHH
T ss_pred CceEE----EECCCCCCHHHHH
Confidence 34577 9999999999753
No 338
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=51.98 E-value=6.4 Score=32.78 Aligned_cols=20 Identities=5% Similarity=-0.175 Sum_probs=16.1
Q ss_pred cCcCcccccceeccCCChhHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
.|.-+. +.||+|+|||....
T Consensus 23 ~G~~~~----i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 23 TGSITE----MFGEFRTGKTQICH 42 (243)
T ss_dssp TTSEEE----EECCTTSSHHHHHH
T ss_pred CCeEEE----EECCCCCcHHHHHH
Confidence 667777 99999999996543
No 339
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=51.52 E-value=9.9 Score=35.60 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=19.5
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
.|.=++ +.|++|+|||. |++-+...+.
T Consensus 202 ~G~lii----I~G~pG~GKTt-l~l~ia~~~~ 228 (454)
T 2r6a_A 202 RSDLII----VAARPSVGKTA-FALNIAQNVA 228 (454)
T ss_dssp TTCEEE----EECCTTSCHHH-HHHHHHHHHH
T ss_pred CCCEEE----EECCCCCCHHH-HHHHHHHHHH
Confidence 566677 99999999994 5555555544
No 340
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=51.38 E-value=5.8 Score=34.01 Aligned_cols=19 Identities=11% Similarity=-0.186 Sum_probs=16.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||.-+
T Consensus 34 ~Ge~~~----i~G~nGsGKSTLl 52 (247)
T 2ff7_A 34 QGEVIG----IVGRSGSGKSTLT 52 (247)
T ss_dssp TTCEEE----EECSTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 777788 9999999999654
No 341
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=51.35 E-value=5.8 Score=34.71 Aligned_cols=19 Identities=0% Similarity=-0.181 Sum_probs=15.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-.
T Consensus 33 ~Ge~~~----iiGpnGsGKSTLl 51 (275)
T 3gfo_A 33 RGEVTA----ILGGNGVGKSTLF 51 (275)
T ss_dssp TTSEEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 677777 8999999999643
No 342
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=51.31 E-value=5.4 Score=35.87 Aligned_cols=18 Identities=6% Similarity=-0.125 Sum_probs=14.6
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
++.++ +.||+|+|||...
T Consensus 45 ~~~vl----l~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNL----FLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEE----EEECTTSSHHHHH
T ss_pred CCcEE----EECCCCCCHHHHH
Confidence 45678 9999999999653
No 343
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=51.30 E-value=5.8 Score=33.49 Aligned_cols=19 Identities=0% Similarity=-0.062 Sum_probs=15.9
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||.-.
T Consensus 33 ~Ge~~~----i~G~nGsGKSTLl 51 (229)
T 2pze_A 33 RGQLLA----VAGSTGAGKTSLL 51 (229)
T ss_dssp TTCEEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 777788 9999999999643
No 344
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=51.07 E-value=15 Score=30.84 Aligned_cols=35 Identities=14% Similarity=0.011 Sum_probs=23.0
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRE 234 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptre 234 (317)
++|+-|||||.+.+=- +.+... .+-+++|+.|...
T Consensus 33 itG~MgsGKTT~lL~~-a~r~~~-------~g~kVli~k~~~d 67 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRR-VRRTQF-------AKQHAIVFKPCID 67 (214)
T ss_dssp EECSTTSCHHHHHHHH-HHHHHH-------TTCCEEEEECC--
T ss_pred EECCCCCcHHHHHHHH-HHHHHH-------CCCEEEEEEeccC
Confidence 6888899999765443 444433 2568899988753
No 345
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=50.87 E-value=5.4 Score=32.31 Aligned_cols=19 Identities=5% Similarity=-0.060 Sum_probs=15.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-++ ++|+.|||||..-
T Consensus 3 ~~~~I~----l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIV----FEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEE----EECCTTSSHHHHH
T ss_pred CCcEEE----EEcCCCCCHHHHH
Confidence 456677 9999999999643
No 346
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=50.85 E-value=5.7 Score=32.36 Aligned_cols=13 Identities=8% Similarity=-0.330 Sum_probs=11.4
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
++|+.|||||...
T Consensus 23 l~G~~GsGKSTla 35 (202)
T 3t61_A 23 VMGVSGSGKSSVG 35 (202)
T ss_dssp EECSTTSCHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8999999999753
No 347
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=50.73 E-value=20 Score=34.28 Aligned_cols=21 Identities=5% Similarity=-0.028 Sum_probs=16.7
Q ss_pred cCcCcccccceeccCCChhHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYIL 206 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~l 206 (317)
.+..++ +.|.||||||.+.-.
T Consensus 166 ~~pHlL----IaG~TGSGKSt~L~~ 186 (512)
T 2ius_A 166 KMPHLL----VAGTTGSGASVGVNA 186 (512)
T ss_dssp GSCSEE----EECCTTSSHHHHHHH
T ss_pred cCceEE----EECCCCCCHHHHHHH
Confidence 456778 999999999976533
No 348
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=50.70 E-value=5.8 Score=31.83 Aligned_cols=18 Identities=6% Similarity=-0.143 Sum_probs=14.5
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+.-++ ++|+.|||||..
T Consensus 8 ~~~~I~----l~G~~GsGKsT~ 25 (196)
T 2c95_A 8 KTNIIF----VVGGPGSGKGTQ 25 (196)
T ss_dssp TSCEEE----EEECTTSSHHHH
T ss_pred CCCEEE----EECCCCCCHHHH
Confidence 455677 999999999974
No 349
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=50.58 E-value=6.1 Score=34.15 Aligned_cols=19 Identities=5% Similarity=-0.160 Sum_probs=16.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||.-.
T Consensus 45 ~Ge~~~----i~G~nGsGKSTLl 63 (260)
T 2ghi_A 45 SGTTCA----LVGHTGSGKSTIA 63 (260)
T ss_dssp TTCEEE----EECSTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 777788 9999999999644
No 350
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=50.57 E-value=6.2 Score=32.69 Aligned_cols=13 Identities=8% Similarity=-0.028 Sum_probs=11.4
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
++|+.|||||+..
T Consensus 10 ~tG~pGsGKT~~a 22 (199)
T 2r2a_A 10 ITGTPGSGKTLKM 22 (199)
T ss_dssp EECCTTSSHHHHH
T ss_pred EEeCCCCCHHHHH
Confidence 8999999999853
No 351
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=50.57 E-value=6 Score=34.38 Aligned_cols=18 Identities=0% Similarity=-0.217 Sum_probs=15.4
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-+. +.||+|||||.-
T Consensus 36 ~Ge~~~----liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVA----IIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEE----EECCTTSCHHHH
T ss_pred CCCEEE----EECCCCCcHHHH
Confidence 677777 899999999964
No 352
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=50.48 E-value=6 Score=32.16 Aligned_cols=18 Identities=0% Similarity=-0.158 Sum_probs=14.4
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+.-++ ++|+.|||||..
T Consensus 19 ~~~~I~----l~G~~GsGKST~ 36 (201)
T 2cdn_A 19 SHMRVL----LLGPPGAGKGTQ 36 (201)
T ss_dssp SCCEEE----EECCTTSSHHHH
T ss_pred CCeEEE----EECCCCCCHHHH
Confidence 445577 899999999974
No 353
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=50.35 E-value=5.7 Score=33.86 Aligned_cols=19 Identities=0% Similarity=-0.123 Sum_probs=16.0
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||.-.
T Consensus 27 ~Ge~~~----i~G~nGsGKSTLl 45 (243)
T 1mv5_A 27 PNSIIA----FAGPSGGGKSTIF 45 (243)
T ss_dssp TTEEEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 777788 9999999999654
No 354
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=50.16 E-value=5.2 Score=32.52 Aligned_cols=18 Identities=6% Similarity=-0.224 Sum_probs=14.2
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-++ +.|+.|||||..
T Consensus 3 ~~~~I~----i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIA----FEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEE----EECCTTSSHHHH
T ss_pred CCeEEE----EEcCCCCCHHHH
Confidence 345567 899999999974
No 355
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=49.94 E-value=6.2 Score=36.07 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=15.8
Q ss_pred cCcC--cccccceeccCCChhHHHHH
Q psy10677 182 QAKK--FISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 182 ~g~d--vi~~~~~~a~tGsGKTla~~ 205 (317)
.|.+ ++ ..|+||||||.+..
T Consensus 82 ~G~n~tif----AYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCF----AYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEE----EECCTTSSHHHHHH
T ss_pred CCceeEEE----eeCCCCCCCCEEEe
Confidence 3776 57 88999999998763
No 356
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=49.82 E-value=6.3 Score=33.53 Aligned_cols=19 Identities=5% Similarity=-0.094 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||.-+
T Consensus 31 ~Ge~~~----l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVT----LIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEE----EECSTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 677777 8999999999643
No 357
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=49.79 E-value=5.6 Score=36.11 Aligned_cols=25 Identities=4% Similarity=0.009 Sum_probs=17.7
Q ss_pred cccccccCcCcccccceeccCCChhHHHH
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..++ +|.|.. +-..|+||||||.+.
T Consensus 88 ~~~l--~G~N~t--ifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLL--EGFQCT--ALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHH--HTCCEE--EEEESSTTSSHHHHH
T ss_pred hHhh--CCCceE--EEEecCCCCCCCeEE
Confidence 4456 777754 116689999999875
No 358
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=49.57 E-value=7.2 Score=34.73 Aligned_cols=19 Identities=0% Similarity=-0.116 Sum_probs=16.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||...
T Consensus 125 ~Ge~va----IvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLA----FIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEE----EECSSSSSHHHHH
T ss_pred CCCEEE----EECCCCCcHHHHH
Confidence 788888 9999999998643
No 359
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=49.54 E-value=5.6 Score=34.91 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=13.3
Q ss_pred CcCcccccceeccCCChhHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla 203 (317)
+.-++ ++||+|||||..
T Consensus 33 ~~liv----l~G~sGsGKSTl 49 (287)
T 1gvn_B 33 PTAFL----LGGQPGSGKTSL 49 (287)
T ss_dssp CEEEE----EECCTTSCTHHH
T ss_pred CeEEE----EECCCCCCHHHH
Confidence 34456 899999999864
No 360
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=49.51 E-value=5.8 Score=34.43 Aligned_cols=19 Identities=5% Similarity=-0.085 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-.
T Consensus 49 ~Gei~~----liG~NGsGKSTLl 67 (263)
T 2olj_A 49 EGEVVV----VIGPSGSGKSTFL 67 (263)
T ss_dssp TTCEEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EEcCCCCcHHHHH
Confidence 777777 8999999999643
No 361
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=49.47 E-value=6.4 Score=35.17 Aligned_cols=17 Identities=0% Similarity=-0.193 Sum_probs=14.0
Q ss_pred cCcccccceeccCCChhHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~ 204 (317)
..++ +.||+|+|||...
T Consensus 52 ~~~l----l~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVL----LAGPPGLGKTTLA 68 (334)
T ss_dssp CCEE----EESSTTSSHHHHH
T ss_pred CeEE----EECCCCCcHHHHH
Confidence 4577 9999999999754
No 362
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=49.26 E-value=6.6 Score=34.86 Aligned_cols=19 Identities=5% Similarity=-0.074 Sum_probs=14.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||...
T Consensus 101 ~g~vi~----lvG~nGsGKTTll 119 (304)
T 1rj9_A 101 KGRVVL----VVGVNGVGKTTTI 119 (304)
T ss_dssp SSSEEE----EECSTTSSHHHHH
T ss_pred CCeEEE----EECCCCCcHHHHH
Confidence 455566 8899999998754
No 363
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=49.15 E-value=6.6 Score=33.96 Aligned_cols=19 Identities=5% Similarity=-0.195 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-.
T Consensus 31 ~Ge~~~----liG~nGsGKSTLl 49 (262)
T 1b0u_A 31 AGDVIS----IIGSSGSGKSTFL 49 (262)
T ss_dssp TTCEEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 677777 8999999999643
No 364
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=49.11 E-value=6.9 Score=31.18 Aligned_cols=12 Identities=8% Similarity=-0.313 Sum_probs=10.9
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++|+.|||||..
T Consensus 7 l~G~~GsGKsT~ 18 (184)
T 2iyv_A 7 LVGLPGSGKSTI 18 (184)
T ss_dssp EECSTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 899999999974
No 365
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=48.95 E-value=5.9 Score=35.73 Aligned_cols=27 Identities=7% Similarity=-0.007 Sum_probs=19.2
Q ss_pred hccccccccCcCcccccceeccCCChhHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +|.|.. +-..|+||||||.+.
T Consensus 72 lv~~~l--~G~n~t--ifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCI--DGFNVC--IFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHH--TTCCEE--EEEESSTTSSHHHHH
T ss_pred HHHHHh--CCCEEE--EEeECCCCCCCcEEE
Confidence 445567 888754 116689999999876
No 366
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=48.91 E-value=5.7 Score=31.54 Aligned_cols=18 Identities=6% Similarity=-0.012 Sum_probs=14.5
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-+. +.+|.|+|||.-
T Consensus 32 ~Ge~v~----L~G~nGaGKTTL 49 (158)
T 1htw_A 32 KAIMVY----LNGDLGAGKTTL 49 (158)
T ss_dssp SCEEEE----EECSTTSSHHHH
T ss_pred CCCEEE----EECCCCCCHHHH
Confidence 566667 899999999964
No 367
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=48.91 E-value=6 Score=32.74 Aligned_cols=18 Identities=0% Similarity=-0.075 Sum_probs=14.2
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+..++ +.|+.|||||..
T Consensus 3 ~~~~I~----l~G~~GsGKsT~ 20 (220)
T 1aky_A 3 ESIRMV----LIGPPGAGKGTQ 20 (220)
T ss_dssp CCCEEE----EECCTTSSHHHH
T ss_pred CCcEEE----EECCCCCCHHHH
Confidence 345567 899999999964
No 368
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=48.74 E-value=6.3 Score=31.57 Aligned_cols=19 Identities=5% Similarity=-0.247 Sum_probs=15.0
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-++ ++|+.|||||...
T Consensus 12 ~~~~i~----l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVW----LTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEE----EECCTTSSHHHHH
T ss_pred CCcEEE----EEcCCCCCHHHHH
Confidence 455677 9999999999743
No 369
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=48.59 E-value=6.5 Score=32.48 Aligned_cols=12 Identities=0% Similarity=-0.280 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.|++|||||..
T Consensus 10 i~G~~GsGKSTl 21 (227)
T 1cke_A 10 IDGPSGAGKGTL 21 (227)
T ss_dssp EECCTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 899999999864
No 370
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=48.45 E-value=6.6 Score=36.50 Aligned_cols=20 Identities=0% Similarity=-0.190 Sum_probs=13.8
Q ss_pred eeccCCChhHHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l 212 (317)
+.||||||||.. ..-+..++
T Consensus 7 i~GptgsGKttl-a~~La~~~ 26 (409)
T 3eph_A 7 IAGTTGVGKSQL-SIQLAQKF 26 (409)
T ss_dssp EEECSSSSHHHH-HHHHHHHH
T ss_pred EECcchhhHHHH-HHHHHHHC
Confidence 889999999953 33344444
No 371
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=48.20 E-value=6.9 Score=33.51 Aligned_cols=19 Identities=0% Similarity=-0.249 Sum_probs=16.0
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||.-+
T Consensus 28 ~Ge~~~----l~G~nGsGKSTLl 46 (250)
T 2d2e_A 28 KGEVHA----LMGPNGAGKSTLG 46 (250)
T ss_dssp TTCEEE----EECSTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 677777 9999999999754
No 372
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=48.18 E-value=8.5 Score=36.78 Aligned_cols=15 Identities=0% Similarity=-0.201 Sum_probs=13.0
Q ss_pred cccccceeccCCChhHHHH
Q psy10677 186 FISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 186 vi~~~~~~a~tGsGKTla~ 204 (317)
++ +.+|+|+|||+..
T Consensus 67 vL----L~GppGtGKTtLa 81 (499)
T 2dhr_A 67 VL----LVGPPGVGKTHLA 81 (499)
T ss_dssp EE----EECSSSSSHHHHH
T ss_pred EE----EECCCCCCHHHHH
Confidence 77 9999999999754
No 373
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=48.18 E-value=6.3 Score=34.92 Aligned_cols=19 Identities=0% Similarity=-0.109 Sum_probs=15.2
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||...
T Consensus 99 ~g~vi~----lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIM----IVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEE----EECCTTSCHHHHH
T ss_pred CCcEEE----EEcCCCCCHHHHH
Confidence 566666 8999999999754
No 374
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=48.13 E-value=7 Score=33.90 Aligned_cols=19 Identities=5% Similarity=-0.223 Sum_probs=16.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-+
T Consensus 45 ~Ge~~~----l~G~NGsGKSTLl 63 (267)
T 2zu0_C 45 PGEVHA----IMGPNGSGKSTLS 63 (267)
T ss_dssp TTCEEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 777788 9999999999754
No 375
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=48.11 E-value=6.1 Score=36.23 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=19.2
Q ss_pred hccccccccCcCcccccceeccCCChhHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +|.|.. +-..|+||||||.+.
T Consensus 71 lv~~~l--~G~n~t--ifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAV--DGYNVC--IFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHH--TTCEEE--EEEEECTTSSHHHHH
T ss_pred hhHhhh--cCCceE--EEEECCCCCCCeEee
Confidence 445667 788754 115689999999886
No 376
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=48.10 E-value=7 Score=32.38 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=14.2
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+..++ +.|+.|||||..
T Consensus 4 ~~~~I~----l~G~~GsGKsT~ 21 (222)
T 1zak_A 4 DPLKVM----ISGAPASGKGTQ 21 (222)
T ss_dssp CSCCEE----EEESTTSSHHHH
T ss_pred CCeEEE----EECCCCCCHHHH
Confidence 345567 899999999974
No 377
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=48.01 E-value=6.2 Score=34.53 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=15.9
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||.-+
T Consensus 46 ~Ge~~~----liG~NGsGKSTLl 64 (279)
T 2ihy_A 46 KGDKWI----LYGLNGAGKTTLL 64 (279)
T ss_dssp TTCEEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EECCCCCcHHHHH
Confidence 777778 9999999999643
No 378
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=47.95 E-value=6.1 Score=33.43 Aligned_cols=17 Identities=6% Similarity=-0.199 Sum_probs=13.3
Q ss_pred cCcccccceeccCCChhHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~ 204 (317)
.-+. +.||+|||||...
T Consensus 28 ~~i~----l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAV----ILGPPGSGKGTVC 44 (246)
T ss_dssp CEEE----EECCTTSSHHHHH
T ss_pred cEEE----EECCCCCCHHHHH
Confidence 4456 8999999999643
No 379
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=47.95 E-value=7.1 Score=33.69 Aligned_cols=19 Identities=11% Similarity=-0.052 Sum_probs=15.9
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-.
T Consensus 40 ~Gei~~----l~G~NGsGKSTLl 58 (256)
T 1vpl_A 40 EGEIFG----LIGPNGAGKTTTL 58 (256)
T ss_dssp TTCEEE----EECCTTSSHHHHH
T ss_pred CCcEEE----EECCCCCCHHHHH
Confidence 777777 9999999999643
No 380
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=47.84 E-value=6.3 Score=35.95 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=17.6
Q ss_pred cccccccCcCcccccceeccCCChhHHHH
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..++ +|.|.. +-..|+||||||.+.
T Consensus 74 ~~~l--~G~n~t--ifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDIL--NGYNGT--VFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHT--TTCCEE--EEEECSTTSSHHHHH
T ss_pred HHHh--CCCcce--EEEECCCCCCcceEe
Confidence 3456 777754 116689999999875
No 381
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=47.84 E-value=6.8 Score=37.29 Aligned_cols=19 Identities=0% Similarity=-0.027 Sum_probs=15.5
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..+.++ +.||+|+|||+..
T Consensus 237 ~~~~vL----L~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGIL----LYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEE----EECSTTSSHHHHH
T ss_pred CCCcEE----EECcCCCCHHHHH
Confidence 445688 9999999999754
No 382
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=47.72 E-value=22 Score=34.52 Aligned_cols=26 Identities=8% Similarity=-0.065 Sum_probs=18.3
Q ss_pred CcCcccccceeccCCChhHHHHHHHHHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~~lp~l~~l 212 (317)
+..++ +.|.||||||.+.-.-++.-+
T Consensus 214 ~pHlL----IaG~TGSGKS~~L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLL----VAGTTGSGKSVGVNAMLLSIL 239 (574)
T ss_dssp SCCEE----EECCTTSSHHHHHHHHHHHHH
T ss_pred CCeeE----EECCCCCCHHHHHHHHHHHHH
Confidence 45677 999999999977544444333
No 383
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=47.72 E-value=6.2 Score=36.00 Aligned_cols=26 Identities=8% Similarity=0.043 Sum_probs=18.0
Q ss_pred ccccccccCcCcccccceeccCCChhHHHH
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+..++ +|.|.. +-..|+||||||.+.
T Consensus 81 v~~~l--~G~n~t--ifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVI--MGYNCT--IFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHH--TTCEEE--EEEEECTTSSHHHHH
T ss_pred HHHHh--CCCceE--EEEeCCCCCCCceEE
Confidence 34456 787654 116689999999875
No 384
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=47.66 E-value=6.1 Score=31.50 Aligned_cols=12 Identities=0% Similarity=-0.321 Sum_probs=10.6
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.|+.|||||..
T Consensus 6 i~G~~GsGKsT~ 17 (194)
T 1nks_A 6 VTGIPGVGKSTV 17 (194)
T ss_dssp EEECTTSCHHHH
T ss_pred EECCCCCCHHHH
Confidence 899999999864
No 385
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=47.65 E-value=7.1 Score=33.56 Aligned_cols=19 Identities=0% Similarity=-0.146 Sum_probs=15.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-+
T Consensus 30 ~Ge~~~----l~G~nGsGKSTLl 48 (253)
T 2nq2_C 30 KGDILA----VLGQNGCGKSTLL 48 (253)
T ss_dssp TTCEEE----EECCSSSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 677777 8999999999643
No 386
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=47.63 E-value=7.2 Score=33.51 Aligned_cols=19 Identities=0% Similarity=-0.209 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-+
T Consensus 25 ~Ge~~~----liG~NGsGKSTLl 43 (249)
T 2qi9_C 25 AGEILH----LVGPNGAGKSTLL 43 (249)
T ss_dssp TTCEEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EECCCCCcHHHHH
Confidence 777777 9999999999643
No 387
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=47.53 E-value=6.4 Score=35.82 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=17.8
Q ss_pred cccccccCcCcccccceeccCCChhHHHH
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..++ +|.|.. +-..|+||||||.+.
T Consensus 83 ~~~l--~G~n~t--ifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVL--EGFNST--IFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHH--TTCCEE--EEEECSTTSSHHHHH
T ss_pred HHHh--CCCcee--EEeecCCCCCCCEEe
Confidence 4456 777654 115689999999885
No 388
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=47.52 E-value=7.2 Score=33.76 Aligned_cols=19 Identities=5% Similarity=0.011 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-+
T Consensus 32 ~Ge~~~----liG~nGsGKSTLl 50 (266)
T 2yz2_A 32 EGECLL----VAGNTGSGKSTLL 50 (266)
T ss_dssp TTCEEE----EECSTTSSHHHHH
T ss_pred CCCEEE----EECCCCCcHHHHH
Confidence 677777 8999999999643
No 389
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=47.20 E-value=7.4 Score=33.21 Aligned_cols=19 Identities=5% Similarity=-0.202 Sum_probs=15.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||...
T Consensus 26 ~g~~I~----I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVIT----VDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEE----EECCTTSSHHHHH
T ss_pred CCcEEE----EECCCCCCHHHHH
Confidence 556677 9999999998654
No 390
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=47.15 E-value=7.1 Score=36.32 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=17.4
Q ss_pred cccccccCcCcccccceeccCCChhHHHH
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..++ +|.|.. +-..|+||||||.+.
T Consensus 148 ~~~l--~G~N~t--ifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIF--EGGKAT--CFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHH--TTCEEE--EEEEESTTSSHHHHH
T ss_pred HHHh--cCCcee--EEeecCCCCCCCeEe
Confidence 4456 777654 116689999999875
No 391
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=47.10 E-value=6.8 Score=35.62 Aligned_cols=13 Identities=15% Similarity=-0.031 Sum_probs=11.3
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
++|+||+|||..+
T Consensus 30 i~G~NGaGKT~il 42 (371)
T 3auy_A 30 IIGENGSGKSSIF 42 (371)
T ss_dssp EEECTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 6999999999764
No 392
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=46.91 E-value=7.5 Score=33.81 Aligned_cols=19 Identities=11% Similarity=-0.213 Sum_probs=15.9
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-+
T Consensus 44 ~Ge~~~----i~G~nGsGKSTLl 62 (271)
T 2ixe_A 44 PGKVTA----LVGPNGSGKSTVA 62 (271)
T ss_dssp TTCEEE----EECSTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 777788 9999999999643
No 393
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=46.83 E-value=6.8 Score=31.94 Aligned_cols=13 Identities=8% Similarity=-0.097 Sum_probs=11.1
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.|+.|||||...
T Consensus 7 l~G~~GsGKST~~ 19 (206)
T 1jjv_A 7 LTGGIGSGKTTIA 19 (206)
T ss_dssp EECSTTSCHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 7899999999743
No 394
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=46.76 E-value=6.6 Score=35.70 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=18.4
Q ss_pred ccccccccCcCcccccceeccCCChhHHHH
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+..++ +|.|.. +-..|+||||||.+.
T Consensus 70 v~~~l--~G~n~t--ifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAI--QGYNGT--IFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHH--TTCCEE--EEEEESTTSSHHHHH
T ss_pred HHHHH--cCCccc--eeeecCCCCCCCeEE
Confidence 34556 787654 115689999999886
No 395
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=46.69 E-value=7.5 Score=30.77 Aligned_cols=12 Identities=8% Similarity=-0.313 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++++.|||||..
T Consensus 9 i~G~~GsGKsTl 20 (175)
T 1via_A 9 FIGFMGSGKSTL 20 (175)
T ss_dssp EECCTTSCHHHH
T ss_pred EEcCCCCCHHHH
Confidence 899999999864
No 396
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=46.68 E-value=6.9 Score=32.57 Aligned_cols=17 Identities=6% Similarity=-0.189 Sum_probs=13.7
Q ss_pred CcCcccccceeccCCChhHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla 203 (317)
+.-++ +.|++|||||..
T Consensus 7 ~~~I~----l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAV----IMGAPGSGKGTV 23 (227)
T ss_dssp CCEEE----EEECTTSSHHHH
T ss_pred CcEEE----EECCCCCCHHHH
Confidence 34567 999999999974
No 397
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=46.58 E-value=7.2 Score=31.87 Aligned_cols=13 Identities=8% Similarity=-0.197 Sum_probs=11.2
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.|++|||||...
T Consensus 27 i~G~~GsGKstl~ 39 (201)
T 1rz3_A 27 IDGLSRSGKTTLA 39 (201)
T ss_dssp EEECTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8899999998743
No 398
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=46.57 E-value=7.3 Score=31.65 Aligned_cols=13 Identities=0% Similarity=-0.118 Sum_probs=11.3
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
++|++|||||...
T Consensus 6 i~G~~GsGKSTl~ 18 (204)
T 2if2_A 6 LTGNIGCGKSTVA 18 (204)
T ss_dssp EEECTTSSHHHHH
T ss_pred EECCCCcCHHHHH
Confidence 8899999999753
No 399
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=46.56 E-value=6.7 Score=35.89 Aligned_cols=26 Identities=4% Similarity=0.064 Sum_probs=18.0
Q ss_pred ccccccccCcCcccccceeccCCChhHHHH
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+..++ +|.|.. +-..|+||||||.+.
T Consensus 82 v~~~l--~G~N~t--ifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAF--EGYNVC--IFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHH--TTCCEE--EEEECSTTSSHHHHH
T ss_pred HHHHh--cCCeeE--EEEeCCCCCCCceEe
Confidence 34456 787754 115689999999875
No 400
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=46.53 E-value=6.4 Score=31.83 Aligned_cols=20 Identities=5% Similarity=-0.162 Sum_probs=13.4
Q ss_pred eeccCCChhHHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHI 212 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l 212 (317)
++|++|||||.. +--++..+
T Consensus 11 i~G~sGsGKTTl-~~~l~~~l 30 (174)
T 1np6_A 11 FAAWSGTGKTTL-LKKLIPAL 30 (174)
T ss_dssp EECCTTSCHHHH-HHHHHHHH
T ss_pred EEeCCCCCHHHH-HHHHHHhc
Confidence 889999999853 33334443
No 401
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=46.49 E-value=7.1 Score=30.62 Aligned_cols=12 Identities=0% Similarity=-0.277 Sum_probs=10.8
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++|+.|||||..
T Consensus 7 l~G~~GsGKsT~ 18 (173)
T 1e6c_A 7 MVGARGCGMTTV 18 (173)
T ss_dssp EESCTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 899999999874
No 402
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=46.36 E-value=7 Score=32.07 Aligned_cols=13 Identities=0% Similarity=-0.409 Sum_probs=11.2
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.|+.|||||...
T Consensus 5 l~G~~GsGKsT~a 17 (216)
T 3fb4_A 5 LMGLPGAGKGTQA 17 (216)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8999999999743
No 403
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=46.18 E-value=17 Score=30.08 Aligned_cols=33 Identities=9% Similarity=-0.088 Sum_probs=21.9
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
+.|+.|||||.-.+=. +.+.... +-+++++.|.
T Consensus 25 iyG~MgsGKTt~Ll~~-i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 25 ILGPMFSGKSTELMRR-VRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp EEECTTSCHHHHHHHH-HHHHHHT-------TCCEEEEEET
T ss_pred EECCCCCcHHHHHHHH-HHHHHHc-------CCeEEEEccc
Confidence 8999999999544433 4443332 3578888775
No 404
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=45.99 E-value=6.9 Score=35.91 Aligned_cols=25 Identities=8% Similarity=-0.016 Sum_probs=17.4
Q ss_pred cccccccCcCcccccceeccCCChhHHHH
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
..++ +|.|.. +-..|+||||||.+.
T Consensus 94 ~~~l--~G~n~t--ifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 94 EEVL--NGYNCT--VFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHH--HTCCEE--EEEECSTTSSHHHHH
T ss_pred HHHh--CCceEE--EEeecCCCCCcceec
Confidence 3456 777754 115689999999875
No 405
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=45.99 E-value=7.2 Score=31.04 Aligned_cols=12 Identities=8% Similarity=-0.305 Sum_probs=10.9
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++|+.|||||..
T Consensus 11 l~G~~GsGKsT~ 22 (194)
T 1qf9_A 11 VLGGPGSGKGTQ 22 (194)
T ss_dssp EEESTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 899999999974
No 406
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=45.88 E-value=8.6 Score=33.19 Aligned_cols=25 Identities=0% Similarity=-0.246 Sum_probs=18.9
Q ss_pred ccccccccCcCcccccceeccCCChhHHHHH
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
++-+. .|.-++ +.||+|||||....
T Consensus 24 lggl~--~G~i~~----i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 24 LPNMV--AGTVGA----LVSPGGAGKSMLAL 48 (279)
T ss_dssp ETTEE--TTSEEE----EEESTTSSHHHHHH
T ss_pred ECCcc--CCCEEE----EEcCCCCCHHHHHH
Confidence 34455 778888 99999999996543
No 407
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=45.87 E-value=8.1 Score=36.11 Aligned_cols=18 Identities=6% Similarity=-0.099 Sum_probs=14.7
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+..++ +.||+|+|||...
T Consensus 130 ~~~ll----l~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLF----IYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEE----EECSSSSSHHHHH
T ss_pred CCeEE----EECCCCCCHHHHH
Confidence 35678 9999999999754
No 408
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=45.86 E-value=7.6 Score=31.59 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=14.9
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-++ ++|+.|||||..
T Consensus 9 ~~~~I~----l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIV----FEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEE----EEESTTSSHHHH
T ss_pred cCCEEE----EEcCCCCCHHHH
Confidence 566677 999999999974
No 409
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=45.83 E-value=7.4 Score=31.26 Aligned_cols=17 Identities=12% Similarity=-0.152 Sum_probs=13.5
Q ss_pred CcCcccccceeccCCChhHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla 203 (317)
+.-++ ++|++|||||..
T Consensus 12 ~~~I~----l~G~~GsGKsT~ 28 (199)
T 2bwj_A 12 CKIIF----IIGGPGSGKGTQ 28 (199)
T ss_dssp SCEEE----EEECTTSSHHHH
T ss_pred CCEEE----EECCCCCCHHHH
Confidence 44566 899999999964
No 410
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=45.75 E-value=7 Score=36.07 Aligned_cols=26 Identities=12% Similarity=-0.077 Sum_probs=17.8
Q ss_pred cccccccCcCcccccceeccCCChhHHHHH
Q psy10677 176 TIPLNFQAKKFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 176 p~~l~~~g~dvi~~~~~~a~tGsGKTla~~ 205 (317)
..++ +|.|.. +-..|+||||||.+..
T Consensus 128 ~~~l--~G~N~t--ifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 128 QTIF--EGGKAT--CFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHH--TTCEEE--EEEESCTTSSHHHHHC
T ss_pred HHHh--cCCceE--EEEecCCCCCCCeEec
Confidence 4456 777644 1166899999998753
No 411
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=45.75 E-value=5.2 Score=32.29 Aligned_cols=13 Identities=8% Similarity=-0.161 Sum_probs=11.1
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+++++|||||...
T Consensus 7 IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 7 IVGTSDSGKTTLI 19 (171)
T ss_dssp EEESCHHHHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 7899999998654
No 412
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=45.59 E-value=5.9 Score=41.45 Aligned_cols=71 Identities=8% Similarity=0.114 Sum_probs=46.8
Q ss_pred eeecCcccceec----ccccCCcCCCCCCcccccCCCCCCCccccCCCCHHHHHHHHHHCCceeecCCCCCCcccccCCC
Q psy10677 66 RFVLGTAGFLLS----AVSFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETN 141 (317)
Q Consensus 66 ~F~~g~~~iLva----arg~~~~lr~~~~d~~~v~nf~~p~~~~i~~~~~~~i~~~~~~~~i~~~g~~~~~~~~~f~~~~ 141 (317)
+|++|+.++||+ ++|+|+ ... ++..++.|... ...++++.|.+|..-.+... .-+.+|-+
T Consensus 644 ~Fk~g~i~ILIvvd~lltGfDi------P~l-~tlylDkpl~~------~~liQaIGRtnR~~~~~K~~-G~IVdf~~-- 707 (1038)
T 2w00_A 644 RVKNQDIDLLIVVGMFLTGFDA------PTL-NTLFVDKNLRY------HGLMQAFSRTNRIYDATKTF-GNIVTFRD-- 707 (1038)
T ss_dssp HHHTTSSSEEEESSTTSSSCCC------TTE-EEEEEESCCCH------HHHHHHHHTTCCCCCTTCCS-EEEEESSC--
T ss_pred HHHcCCCeEEEEcchHHhCcCc------ccc-cEEEEccCCCc------cceeehhhccCcCCCCCCCc-EEEEEccc--
Confidence 799999999999 999999 666 55566666533 57899999988875321110 11234443
Q ss_pred CChhhhcccCc
Q psy10677 142 IPSYILGPMKP 152 (317)
Q Consensus 142 l~~~l~~~l~~ 152 (317)
+...+.++++.
T Consensus 708 ~~~~l~~Al~~ 718 (1038)
T 2w00_A 708 LERSTIDAITL 718 (1038)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 55666666554
No 413
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=45.58 E-value=8.4 Score=33.97 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=15.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|+-+. +.+++|+|||...
T Consensus 104 ~g~vi~----lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIV----LFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEE----EEESTTSSHHHHH
T ss_pred CCcEEE----EECCCCCCHHHHH
Confidence 566677 8999999999754
No 414
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=45.55 E-value=7.3 Score=32.65 Aligned_cols=18 Identities=0% Similarity=-0.154 Sum_probs=14.7
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+..++ +.|+.|||||..
T Consensus 15 ~~~~I~----l~G~~GsGKsT~ 32 (233)
T 1ak2_A 15 KGVRAV----LLGPPGAGKGTQ 32 (233)
T ss_dssp CCCEEE----EECCTTSSHHHH
T ss_pred CCeEEE----EECCCCCCHHHH
Confidence 456678 999999999964
No 415
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.45 E-value=8.5 Score=34.05 Aligned_cols=16 Identities=6% Similarity=-0.070 Sum_probs=13.4
Q ss_pred cCcccccceeccCCChhHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla 203 (317)
.+++ +.||+|+|||..
T Consensus 59 ~~~l----l~G~~G~GKT~l 74 (353)
T 1sxj_D 59 PHML----FYGPPGTGKTST 74 (353)
T ss_dssp CCEE----EECSTTSSHHHH
T ss_pred CEEE----EECCCCCCHHHH
Confidence 3477 999999999964
No 416
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=45.31 E-value=15 Score=34.87 Aligned_cols=50 Identities=4% Similarity=-0.073 Sum_probs=29.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 243 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 243 (317)
.|.=++ +.|++|+|||. |++-++.++... .+-.+++++- .+-..|+...+
T Consensus 241 ~G~l~l----i~G~pG~GKT~-lal~~a~~~a~~------~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIM----VTSGSGMVMST-FVRQQALQWGTA------MGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp TTCEEE----EEESSCHHHHH-HHHHHHHHHTTT------SCCCEEEEES-SSCHHHHHHHH
T ss_pred CCeEEE----EeecCCCCchH-HHHHHHHHHHHh------cCCcEEEEec-cCCHHHHHHHH
Confidence 566677 89999999994 555555555432 1335666643 22234444433
No 417
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=45.23 E-value=7.8 Score=34.47 Aligned_cols=19 Identities=0% Similarity=-0.108 Sum_probs=16.2
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +++|+|||||...
T Consensus 79 ~Ge~va----ivG~sGsGKSTLl 97 (306)
T 3nh6_A 79 PGQTLA----LVGPSGAGKSTIL 97 (306)
T ss_dssp TTCEEE----EESSSCHHHHHHH
T ss_pred CCCEEE----EECCCCchHHHHH
Confidence 788888 9999999999653
No 418
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=44.89 E-value=7.9 Score=32.74 Aligned_cols=13 Identities=8% Similarity=-0.112 Sum_probs=11.4
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.||+|||||...
T Consensus 30 I~G~~GsGKSTl~ 42 (245)
T 2jeo_A 30 VSGGTASGKSTVC 42 (245)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8899999999754
No 419
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=44.81 E-value=8 Score=31.48 Aligned_cols=19 Identities=0% Similarity=-0.085 Sum_probs=15.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-++ ++|+.|||||...
T Consensus 8 ~~~~I~----l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIV----LEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEE----EEESTTSSHHHHH
T ss_pred CCcEEE----EECCCCCCHHHHH
Confidence 456677 9999999999753
No 420
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=44.69 E-value=9.4 Score=33.18 Aligned_cols=19 Identities=0% Similarity=-0.165 Sum_probs=15.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.=++ +.|++|+|||...
T Consensus 34 ~G~~~~----i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 34 GGEVIM----VTSGSGMGKSTFV 52 (296)
T ss_dssp TTCEEE----EEESTTSSHHHHH
T ss_pred CCeEEE----EEeCCCCCHHHHH
Confidence 677777 9999999999644
No 421
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=44.65 E-value=7.7 Score=31.85 Aligned_cols=13 Identities=0% Similarity=-0.455 Sum_probs=11.2
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
++|+.|||||...
T Consensus 5 l~G~~GsGKsT~a 17 (216)
T 3dl0_A 5 LMGLPGAGKGTQG 17 (216)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8999999999753
No 422
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=44.39 E-value=8.2 Score=37.20 Aligned_cols=19 Identities=0% Similarity=-0.230 Sum_probs=15.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|..++ +.+|+|+|||...
T Consensus 107 ~g~~vl----l~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILC----LAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEE----EESSSSSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 467788 9999999999643
No 423
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=43.99 E-value=8.9 Score=34.26 Aligned_cols=20 Identities=0% Similarity=-0.210 Sum_probs=16.7
Q ss_pred cCcCcccccceeccCCChhH-HHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSV-FTYI 205 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKT-la~~ 205 (317)
.|+-++ +.|++|+||| +|..
T Consensus 146 ~g~gvl----i~G~sG~GKStlal~ 166 (312)
T 1knx_A 146 FGVGVL----LTGRSGIGKSECALD 166 (312)
T ss_dssp TTEEEE----EEESSSSSHHHHHHH
T ss_pred CCEEEE----EEcCCCCCHHHHHHH
Confidence 788899 9999999995 5543
No 424
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.92 E-value=8.1 Score=36.86 Aligned_cols=17 Identities=0% Similarity=-0.212 Sum_probs=13.9
Q ss_pred cCcccccceeccCCChhHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~ 204 (317)
+.++ +.||+|+|||...
T Consensus 78 ~~lL----L~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAM----LYGPPGIGKTTAA 94 (516)
T ss_dssp SEEE----EECSTTSSHHHHH
T ss_pred cEEE----EECCCCCCHHHHH
Confidence 4566 9999999999754
No 425
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=43.88 E-value=8 Score=36.45 Aligned_cols=19 Identities=5% Similarity=-0.162 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
...+++ +.||+|+|||...
T Consensus 200 ~~~~~L----L~G~pG~GKT~la 218 (468)
T 3pxg_A 200 TKNNPV----LIGEPGVGKTAIA 218 (468)
T ss_dssp SSCEEE----EESCTTTTTHHHH
T ss_pred CCCCeE----EECCCCCCHHHHH
Confidence 456788 9999999999754
No 426
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=43.66 E-value=8.9 Score=33.77 Aligned_cols=19 Identities=0% Similarity=-0.062 Sum_probs=16.2
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-+
T Consensus 63 ~Ge~~~----i~G~NGsGKSTLl 81 (290)
T 2bbs_A 63 RGQLLA----VAGSTGAGKTSLL 81 (290)
T ss_dssp TTCEEE----EEESTTSSHHHHH
T ss_pred CCCEEE----EECCCCCcHHHHH
Confidence 777788 9999999999754
No 427
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=43.63 E-value=8.1 Score=30.27 Aligned_cols=13 Identities=8% Similarity=-0.330 Sum_probs=11.2
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.++.|||||...
T Consensus 12 l~G~~GsGKSTva 24 (168)
T 1zuh_A 12 LIGFMGSGKSSLA 24 (168)
T ss_dssp EESCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8999999999743
No 428
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=43.56 E-value=45 Score=37.48 Aligned_cols=39 Identities=5% Similarity=-0.058 Sum_probs=25.4
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCc
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPT 232 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Pt 232 (317)
.|+.++ +.+|+|+|||.-.+--+.+.. . .|.+++++..-
T Consensus 1426 ~g~~vl----l~GppGtGKT~LA~ala~ea~-~-------~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1426 MGRIVE----IYGPESSGKTTLTLQVIAAAQ-R-------EGKTCAFIDAE 1464 (2050)
T ss_dssp TTSEEE----EECCTTSSHHHHHHHHHHHHH-T-------TTCCEEEECTT
T ss_pred CCeEEE----EECCCCCCHHHHHHHHHHHHH-H-------cCCcEEEEEcc
Confidence 578999 999999999975433333322 2 24566666543
No 429
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=43.34 E-value=8.9 Score=31.59 Aligned_cols=13 Identities=8% Similarity=-0.227 Sum_probs=11.3
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.||+|||||..+
T Consensus 28 I~G~NgsGKStil 40 (203)
T 3qks_A 28 IIGQNGSGKSSLL 40 (203)
T ss_dssp EECCTTSSHHHHH
T ss_pred EEcCCCCCHHHHH
Confidence 6899999999764
No 430
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=43.27 E-value=7.8 Score=31.18 Aligned_cols=12 Identities=8% Similarity=-0.169 Sum_probs=10.6
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.|+.|||||..
T Consensus 5 i~G~~GsGKsT~ 16 (205)
T 2jaq_A 5 IFGTVGAGKSTI 16 (205)
T ss_dssp EECCTTSCHHHH
T ss_pred EECCCccCHHHH
Confidence 889999999963
No 431
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=43.12 E-value=8.5 Score=31.20 Aligned_cols=13 Identities=0% Similarity=-0.322 Sum_probs=11.2
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
++|+.|||||...
T Consensus 20 l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 20 VLGGPGAGKGTQC 32 (203)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8999999999743
No 432
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=42.69 E-value=9.6 Score=35.83 Aligned_cols=18 Identities=6% Similarity=-0.090 Sum_probs=14.7
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.++++ +.+|+|+|||...
T Consensus 50 ~~~iL----l~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNIL----MIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEE----EECCTTSSHHHHH
T ss_pred CceEE----EEcCCCCCHHHHH
Confidence 45688 9999999998743
No 433
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=42.50 E-value=8.5 Score=36.12 Aligned_cols=16 Identities=6% Similarity=-0.159 Sum_probs=13.5
Q ss_pred CcccccceeccCCChhHHHH
Q psy10677 185 KFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla~ 204 (317)
.++ +.||+|+|||...
T Consensus 52 ~vL----L~GppGtGKTtlA 67 (447)
T 3pvs_A 52 SMI----LWGPPGTGKTTLA 67 (447)
T ss_dssp EEE----EECSTTSSHHHHH
T ss_pred EEE----EECCCCCcHHHHH
Confidence 567 9999999999754
No 434
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=42.45 E-value=8.8 Score=29.91 Aligned_cols=12 Identities=8% Similarity=-0.283 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.++.|||||..
T Consensus 5 l~G~~GsGKsT~ 16 (168)
T 2pt5_A 5 LIGFMCSGKSTV 16 (168)
T ss_dssp EESCTTSCHHHH
T ss_pred EECCCCCCHHHH
Confidence 899999999964
No 435
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=42.41 E-value=8.4 Score=36.22 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=18.2
Q ss_pred ccccccccCcCcccccceeccCCChhHHHH
Q psy10677 175 WTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 175 ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+..++ +|.|.. +-..|+||||||.+.
T Consensus 129 v~~~l--~GyN~t--IfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNF--EGYHTC--IFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHH--TTCCEE--EEEESSTTSSHHHHH
T ss_pred HHHhh--cCCceE--EEEeCCCCCCCCEEe
Confidence 34457 788754 115679999999886
No 436
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=42.28 E-value=8.2 Score=38.56 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=19.2
Q ss_pred hccccccccCcCcccccceeccCCChhHHHH
Q psy10677 174 NWTIPLNFQAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 174 ~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+..++ +|.|.. +-..|+||||||.+-
T Consensus 454 ~v~~~~--~G~n~~--i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSL--DGTNVC--VFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHH--TTCCEE--EEEESSTTSSHHHHH
T ss_pred HHHHHh--CCceEE--EEccCCCCCchhhcc
Confidence 455667 888754 115689999999875
No 437
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=42.25 E-value=64 Score=27.68 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHc
Q psy10677 196 VQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILL 270 (317)
Q Consensus 196 tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~~ 270 (317)
..|||-. .+.-++..+.. .+-++||.+.++..+..+.+.+.+- .|+.+..++|+++..+....+
T Consensus 93 ~~s~K~~-~L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i 156 (271)
T 1z5z_A 93 RRSGKMI-RTMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDII 156 (271)
T ss_dssp TTCHHHH-HHHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHH
T ss_pred ccCHHHH-HHHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHH
Confidence 4588864 44556655543 2468999999999988888777653 256778899999876655433
No 438
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=42.07 E-value=9.1 Score=36.32 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=13.9
Q ss_pred cCcccccceeccCCChhHHHH
Q psy10677 184 KKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 184 ~dvi~~~~~~a~tGsGKTla~ 204 (317)
+.++ +.||+|+|||+..
T Consensus 50 ~gvL----L~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGIL----LVGPPGTGKTLLA 66 (476)
T ss_dssp SEEE----EECCTTSSHHHHH
T ss_pred CeEE----EECCCCCCHHHHH
Confidence 3477 9999999999754
No 439
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=41.91 E-value=10 Score=32.83 Aligned_cols=12 Identities=8% Similarity=-0.141 Sum_probs=10.9
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.||+|+|||..
T Consensus 43 l~G~~G~GKt~l 54 (319)
T 2chq_A 43 FSGPPGTGKTAT 54 (319)
T ss_dssp EESSSSSSHHHH
T ss_pred EECcCCcCHHHH
Confidence 999999999964
No 440
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=41.52 E-value=9.2 Score=34.00 Aligned_cols=19 Identities=11% Similarity=-0.226 Sum_probs=14.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.=+. +.||+|||||...
T Consensus 89 ~g~ivg----I~G~sGsGKSTL~ 107 (312)
T 3aez_A 89 VPFIIG----VAGSVAVGKSTTA 107 (312)
T ss_dssp CCEEEE----EECCTTSCHHHHH
T ss_pred CCEEEE----EECCCCchHHHHH
Confidence 555566 8899999998654
No 441
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=41.31 E-value=9.2 Score=30.77 Aligned_cols=13 Identities=8% Similarity=-0.064 Sum_probs=11.2
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.+++|||||...
T Consensus 13 i~G~~GsGKST~~ 25 (203)
T 1uf9_A 13 ITGNIGSGKSTVA 25 (203)
T ss_dssp EEECTTSCHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8899999999753
No 442
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=41.24 E-value=9.4 Score=30.40 Aligned_cols=12 Identities=8% Similarity=-0.249 Sum_probs=10.6
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++|+.|||||..
T Consensus 5 l~G~~GsGKsT~ 16 (195)
T 2pbr_A 5 FEGIDGSGKTTQ 16 (195)
T ss_dssp EECSTTSCHHHH
T ss_pred EECCCCCCHHHH
Confidence 889999999864
No 443
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=41.23 E-value=10 Score=32.84 Aligned_cols=18 Identities=17% Similarity=-0.009 Sum_probs=14.7
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
|.-+. +.+|+|||||.-+
T Consensus 30 Ge~~~----i~G~NGsGKSTLl 47 (263)
T 2pjz_A 30 GEKVI----ILGPNGSGKTTLL 47 (263)
T ss_dssp SSEEE----EECCTTSSHHHHH
T ss_pred CEEEE----EECCCCCCHHHHH
Confidence 66667 8999999999654
No 444
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=41.20 E-value=9.4 Score=34.78 Aligned_cols=19 Identities=0% Similarity=-0.109 Sum_probs=15.2
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||...
T Consensus 156 ~g~vi~----lvG~nGsGKTTll 174 (359)
T 2og2_A 156 KPAVIM----IVGVNGGGKTTSL 174 (359)
T ss_dssp SSEEEE----EECCTTSCHHHHH
T ss_pred CCeEEE----EEcCCCChHHHHH
Confidence 555566 8999999999754
No 445
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=40.93 E-value=7.1 Score=30.93 Aligned_cols=18 Identities=6% Similarity=-0.114 Sum_probs=9.8
Q ss_pred CcCcccccceeccCCChhHHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla~ 204 (317)
+.-++ ++|+.|||||...
T Consensus 5 ~~~I~----l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIW----INGPFGVGKTHTA 22 (183)
T ss_dssp CCEEE----EECCC----CHHH
T ss_pred CeEEE----EECCCCCCHHHHH
Confidence 34456 8999999999753
No 446
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=40.85 E-value=11 Score=36.79 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=16.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|..++ +.+|+|+|||...
T Consensus 59 ~g~~vl----l~Gp~GtGKTtla 77 (604)
T 3k1j_A 59 QKRHVL----LIGEPGTGKSMLG 77 (604)
T ss_dssp TTCCEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EEeCCCCCHHHHH
Confidence 788999 9999999999654
No 447
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=40.81 E-value=9.9 Score=34.03 Aligned_cols=14 Identities=7% Similarity=-0.301 Sum_probs=11.9
Q ss_pred eeccCCChhHHHHH
Q psy10677 192 KKAEVQSRSVFTYI 205 (317)
Q Consensus 192 ~~a~tGsGKTla~~ 205 (317)
++||+|||||..+-
T Consensus 28 i~G~NGsGKS~lle 41 (339)
T 3qkt_A 28 IIGQNGSGKSSLLD 41 (339)
T ss_dssp EECCTTSSHHHHHH
T ss_pred EECCCCCCHHHHHH
Confidence 68999999998653
No 448
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=40.74 E-value=7.5 Score=33.14 Aligned_cols=18 Identities=6% Similarity=-0.021 Sum_probs=13.9
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+.-++ ++|++|||||..
T Consensus 31 ~~~~i~----l~G~~GsGKSTl 48 (253)
T 2p5t_B 31 QPIAIL----LGGQSGAGKTTI 48 (253)
T ss_dssp SCEEEE----EESCGGGTTHHH
T ss_pred CCeEEE----EECCCCCCHHHH
Confidence 344566 899999999974
No 449
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=40.49 E-value=10 Score=33.02 Aligned_cols=16 Identities=0% Similarity=-0.139 Sum_probs=13.3
Q ss_pred CcccccceeccCCChhHHHH
Q psy10677 185 KFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla~ 204 (317)
.++ +.||+|+|||...
T Consensus 48 ~~l----l~G~~G~GKT~la 63 (327)
T 1iqp_A 48 HLL----FAGPPGVGKTTAA 63 (327)
T ss_dssp EEE----EESCTTSSHHHHH
T ss_pred eEE----EECcCCCCHHHHH
Confidence 477 9999999999653
No 450
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=40.40 E-value=9.3 Score=30.57 Aligned_cols=13 Identities=8% Similarity=-0.273 Sum_probs=11.0
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.|+.|||||...
T Consensus 5 l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 5 FEGIDGSGKSTQI 17 (197)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 7899999998643
No 451
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=40.27 E-value=9.1 Score=32.04 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=14.0
Q ss_pred cCcCcccccceeccCCChhHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVF 202 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTl 202 (317)
.|.-+. +.|+.|||||.
T Consensus 19 ~g~~i~----i~G~~GsGKST 35 (230)
T 2vp4_A 19 QPFTVL----IEGNIGSGKTT 35 (230)
T ss_dssp CCEEEE----EECSTTSCHHH
T ss_pred CceEEE----EECCCCCCHHH
Confidence 555566 89999999996
No 452
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=40.10 E-value=12 Score=36.47 Aligned_cols=15 Identities=0% Similarity=-0.055 Sum_probs=13.6
Q ss_pred CcccccceeccCCChhHHH
Q psy10677 185 KFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla 203 (317)
+++ +.||+|+|||..
T Consensus 329 ~vL----L~GppGtGKT~L 343 (595)
T 3f9v_A 329 HIL----IIGDPGTAKSQM 343 (595)
T ss_dssp CEE----EEESSCCTHHHH
T ss_pred ceE----EECCCchHHHHH
Confidence 899 999999999964
No 453
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=39.87 E-value=9.8 Score=32.58 Aligned_cols=12 Identities=0% Similarity=-0.396 Sum_probs=10.9
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
++|++|||||..
T Consensus 9 l~G~pGSGKSTl 20 (260)
T 3a4m_A 9 LTGLPGVGKSTF 20 (260)
T ss_dssp EECCTTSSHHHH
T ss_pred EEcCCCCCHHHH
Confidence 899999999974
No 454
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=39.85 E-value=9.2 Score=32.40 Aligned_cols=18 Identities=11% Similarity=-0.029 Sum_probs=14.2
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.+..++ +.|+.|||||..
T Consensus 28 ~~~~I~----l~G~~GsGKsT~ 45 (243)
T 3tlx_A 28 PDGRYI----FLGAPGSGKGTQ 45 (243)
T ss_dssp CCEEEE----EECCTTSSHHHH
T ss_pred CCcEEE----EECCCCCCHHHH
Confidence 344577 999999999864
No 455
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=39.54 E-value=24 Score=31.76 Aligned_cols=21 Identities=10% Similarity=-0.017 Sum_probs=15.0
Q ss_pred eeccCCChhHHHHHHHHHHHHH
Q psy10677 192 KKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~ 213 (317)
+.+|+|||||. +++.++....
T Consensus 33 I~G~pGsGKTt-L~Lq~~~~~~ 53 (333)
T 3io5_A 33 LAGPSKSFKSN-FGLTMVSSYM 53 (333)
T ss_dssp EEESSSSSHHH-HHHHHHHHHH
T ss_pred EECCCCCCHHH-HHHHHHHHHH
Confidence 89999999995 4444554444
No 456
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=39.47 E-value=10 Score=31.16 Aligned_cols=13 Identities=8% Similarity=-0.107 Sum_probs=11.2
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.|+.|||||...
T Consensus 9 i~G~~GSGKST~~ 21 (218)
T 1vht_A 9 LTGGIGSGKSTVA 21 (218)
T ss_dssp EECCTTSCHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8999999999743
No 457
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=39.45 E-value=24 Score=29.80 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=22.9
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTR 233 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptr 233 (317)
++++-|||||.+.+ -.+.+... .+.+++|+.|..
T Consensus 33 itG~M~sGKTT~Ll-r~~~r~~~-------~g~kvli~kp~~ 66 (219)
T 3e2i_A 33 ITGSMFSGKSEELI-RRLRRGIY-------AKQKVVVFKPAI 66 (219)
T ss_dssp EEECTTSCHHHHHH-HHHHHHHH-------TTCCEEEEEEC-
T ss_pred EECCCCCCHHHHHH-HHHHHHHH-------cCCceEEEEecc
Confidence 78999999996543 34455543 246788888854
No 458
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=39.27 E-value=10 Score=34.52 Aligned_cols=19 Identities=5% Similarity=-0.174 Sum_probs=15.9
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||.-.
T Consensus 40 ~Ge~~~----llGpnGsGKSTLL 58 (355)
T 1z47_A 40 EGEMVG----LLGPSGSGKTTIL 58 (355)
T ss_dssp TTCEEE----EECSTTSSHHHHH
T ss_pred CCCEEE----EECCCCCcHHHHH
Confidence 777777 8999999999753
No 459
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=39.26 E-value=11 Score=34.28 Aligned_cols=18 Identities=0% Similarity=-0.138 Sum_probs=15.1
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-+. +.+|+|||||..
T Consensus 29 ~Ge~~~----llGpsGsGKSTL 46 (359)
T 3fvq_A 29 PGEILF----IIGASGCGKTTL 46 (359)
T ss_dssp TTCEEE----EEESTTSSHHHH
T ss_pred CCCEEE----EECCCCchHHHH
Confidence 677777 899999999864
No 460
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=39.14 E-value=11 Score=32.07 Aligned_cols=13 Identities=0% Similarity=-0.204 Sum_probs=11.2
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.||+|||||.-.
T Consensus 29 liG~nGsGKSTLl 41 (240)
T 2onk_A 29 LLGPTGAGKSVFL 41 (240)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 7899999999754
No 461
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=39.00 E-value=11 Score=33.84 Aligned_cols=19 Identities=11% Similarity=-0.158 Sum_probs=15.0
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||...
T Consensus 128 ~g~vi~----lvG~nGaGKTTll 146 (328)
T 3e70_C 128 KPYVIM----FVGFNGSGKTTTI 146 (328)
T ss_dssp SSEEEE----EECCTTSSHHHHH
T ss_pred CCeEEE----EECCCCCCHHHHH
Confidence 455667 8999999999743
No 462
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=38.85 E-value=10 Score=38.50 Aligned_cols=19 Identities=0% Similarity=-0.027 Sum_probs=15.9
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.++.++ +.||+|||||...
T Consensus 237 ~~~~vL----L~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGIL----LYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEE----ECSCTTSSHHHHH
T ss_pred CCCeEE----EECcCCCCHHHHH
Confidence 567788 9999999999643
No 463
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=38.70 E-value=11 Score=30.36 Aligned_cols=18 Identities=0% Similarity=-0.130 Sum_probs=15.0
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|..+. +.|++|+|||.-
T Consensus 25 ~~~~v~----lvG~~g~GKSTL 42 (210)
T 1pui_A 25 TGIEVA----FAGRSNAGKSSA 42 (210)
T ss_dssp CSEEEE----EEECTTSSHHHH
T ss_pred CCcEEE----EECCCCCCHHHH
Confidence 666778 999999999953
No 464
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=38.43 E-value=10 Score=31.43 Aligned_cols=11 Identities=0% Similarity=-0.405 Sum_probs=9.9
Q ss_pred eeccCCChhHH
Q psy10677 192 KKAEVQSRSVF 202 (317)
Q Consensus 192 ~~a~tGsGKTl 202 (317)
+.||+||||+.
T Consensus 5 l~GpPGsGKgT 15 (206)
T 3sr0_A 5 FLGPPGAGKGT 15 (206)
T ss_dssp EECSTTSSHHH
T ss_pred EECCCCCCHHH
Confidence 78999999975
No 465
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=38.19 E-value=11 Score=33.18 Aligned_cols=19 Identities=11% Similarity=-0.172 Sum_probs=14.1
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.=+. +.|++|||||...
T Consensus 79 ~g~iig----I~G~~GsGKSTl~ 97 (308)
T 1sq5_A 79 IPYIIS----IAGSVAVGKSTTA 97 (308)
T ss_dssp CCEEEE----EEECTTSSHHHHH
T ss_pred CCEEEE----EECCCCCCHHHHH
Confidence 444455 8899999998643
No 466
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=38.12 E-value=11 Score=37.82 Aligned_cols=19 Identities=5% Similarity=-0.162 Sum_probs=15.8
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
...+++ +.||+|+|||...
T Consensus 200 ~~~~vL----L~G~pGtGKT~la 218 (758)
T 3pxi_A 200 TKNNPV----LIGEPGVGKTAIA 218 (758)
T ss_dssp SSCEEE----EESCTTTTTHHHH
T ss_pred CCCCeE----EECCCCCCHHHHH
Confidence 456888 9999999999743
No 467
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=38.10 E-value=11 Score=30.91 Aligned_cols=12 Identities=0% Similarity=-0.338 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.|+.|||||..
T Consensus 5 l~G~~GsGKsT~ 16 (214)
T 1e4v_A 5 LLGAPVAGKGTQ 16 (214)
T ss_dssp EEESTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 899999999864
No 468
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=37.59 E-value=11 Score=34.59 Aligned_cols=18 Identities=0% Similarity=-0.164 Sum_probs=15.2
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-+. +.+|+|||||..
T Consensus 28 ~Ge~~~----llGpsGsGKSTL 45 (381)
T 3rlf_A 28 EGEFVV----FVGPSGCGKSTL 45 (381)
T ss_dssp TTCEEE----EECCTTSSHHHH
T ss_pred CCCEEE----EEcCCCchHHHH
Confidence 677777 899999999964
No 469
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=37.53 E-value=11 Score=36.54 Aligned_cols=18 Identities=0% Similarity=-0.199 Sum_probs=15.9
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-+. ++||+|||||.-
T Consensus 366 ~G~~~~----ivG~sGsGKSTl 383 (578)
T 4a82_A 366 KGETVA----FVGMSGGGKSTL 383 (578)
T ss_dssp TTCEEE----EECSTTSSHHHH
T ss_pred CCCEEE----EECCCCChHHHH
Confidence 788888 999999999964
No 470
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=37.51 E-value=12 Score=34.40 Aligned_cols=19 Identities=5% Similarity=-0.127 Sum_probs=16.2
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||...
T Consensus 46 ~Ge~~~----llGpsGsGKSTLL 64 (390)
T 3gd7_A 46 PGQRVG----LLGRTGSGKSTLL 64 (390)
T ss_dssp TTCEEE----EEESTTSSHHHHH
T ss_pred CCCEEE----EECCCCChHHHHH
Confidence 777788 9999999999754
No 471
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=37.46 E-value=13 Score=32.41 Aligned_cols=44 Identities=5% Similarity=-0.138 Sum_probs=27.8
Q ss_pred hhhhcccCcCCCCCCCcCCCCCCCCchhhhh-ccccccccCc-----CcccccceeccCCChhHHHHH
Q psy10677 144 SYILGPMKPKTTNNENNHNKNKKCGDKESKN-WTIPLNFQAK-----KFISVLQKKAEVQSRSVFTYI 205 (317)
Q Consensus 144 ~~l~~~l~~~g~~~p~~~~~~~~~t~iQ~~~-ip~~l~~~g~-----dvi~~~~~~a~tGsGKTla~~ 205 (317)
..+.+-|+-.||. | ++... +-..+ .|+ .++ +.||+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~-~-----------~~~~~~l~~~l--~~~~~~~n~~~----l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD-P-----------QYAASVFLGWA--TKKFGKRNTIW----LFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC-H-----------HHHHHHHHHHH--TTCSTTCCEEE----EECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC-H-----------HHHHHHHHHHH--hCCCCCCcEEE----EECCCCCCHHHHHH
Confidence 4567777766765 3 34222 33344 332 477 99999999998665
No 472
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=37.25 E-value=13 Score=33.13 Aligned_cols=42 Identities=5% Similarity=-0.162 Sum_probs=25.6
Q ss_pred Cchhhhhcccccc--ccCc---CcccccceeccCCChhHHHHHHHHHHHHHc
Q psy10677 168 GDKESKNWTIPLN--FQAK---KFISVLQKKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 168 t~iQ~~~ip~~l~--~~g~---dvi~~~~~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
.|.|..++..+.+ .+|+ -++ +.||.|+|||.... -+...+..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L----~~G~~G~GKt~~a~-~la~~l~~ 50 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALL----IQALPGMGDDALIY-ALSRYLLC 50 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEE----EECCTTSCHHHHHH-HHHHHHTC
T ss_pred CCchHHHHHHHHHHHHcCCcceeEE----EECCCCchHHHHHH-HHHHHHhC
Confidence 5677777655542 0232 367 89999999986433 33444543
No 473
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=37.06 E-value=12 Score=30.62 Aligned_cols=13 Identities=0% Similarity=-0.020 Sum_probs=11.1
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
++|+.|||||...
T Consensus 17 ltG~~GSGKSTva 29 (192)
T 2grj_A 17 VTGKIGTGKSTVC 29 (192)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8899999998753
No 474
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=36.86 E-value=13 Score=33.83 Aligned_cols=19 Identities=5% Similarity=-0.139 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||...
T Consensus 28 ~Ge~~~----llGpnGsGKSTLL 46 (359)
T 2yyz_A 28 DGEFVA----LLGPSGCGKTTTL 46 (359)
T ss_dssp TTCEEE----EECSTTSSHHHHH
T ss_pred CCCEEE----EEcCCCchHHHHH
Confidence 677777 8999999999743
No 475
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=36.76 E-value=13 Score=32.74 Aligned_cols=13 Identities=23% Similarity=0.059 Sum_probs=10.9
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
++|++|||||...
T Consensus 36 I~G~sGsGKSTla 48 (290)
T 1odf_A 36 FSGPQGSGKSFTS 48 (290)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8899999998643
No 476
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=36.74 E-value=16 Score=32.40 Aligned_cols=13 Identities=8% Similarity=-0.217 Sum_probs=11.3
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.||+|+|||...
T Consensus 51 l~Gp~G~GKTtla 63 (340)
T 1sxj_C 51 FYGPPGTGKTSTI 63 (340)
T ss_dssp EECSSSSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 9999999999654
No 477
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=36.58 E-value=20 Score=35.50 Aligned_cols=62 Identities=10% Similarity=-0.053 Sum_probs=41.3
Q ss_pred CCCchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 166 KCGDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 166 ~~t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
++|.-|.+++..++.....-.+ ++|+-|.|||.+.-+.+- .+. -.++|-+||.+=+..+.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~v----lta~RGRGKSa~lG~~~a-~~~----------~~~~vtAP~~~a~~~l~~~ 236 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAA----VTAARGRGKSALAGQLIS-RIA----------GRAIVTAPAKASTDVLAQF 236 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEE----EEECTTSSHHHHHHHHHH-HSS----------SCEEEECSSCCSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEE----EecCCCCCHHHHHHHHHH-HHH----------hCcEEECCCHHHHHHHHHH
Confidence 4499999999877731122346 899999999966555443 221 1358999998876655443
No 478
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=36.55 E-value=11 Score=31.23 Aligned_cols=12 Identities=8% Similarity=-0.352 Sum_probs=10.7
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.|+.|||||..
T Consensus 5 l~G~~GsGKsT~ 16 (223)
T 2xb4_A 5 IFGPNGSGKGTQ 16 (223)
T ss_dssp EECCTTSCHHHH
T ss_pred EECCCCCCHHHH
Confidence 889999999974
No 479
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=36.35 E-value=12 Score=37.35 Aligned_cols=19 Identities=5% Similarity=-0.120 Sum_probs=15.9
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.+.+++ +.||+|+|||...
T Consensus 206 ~~~~vl----L~G~~GtGKT~la 224 (758)
T 1r6b_X 206 RKNNPL----LVGESGVGKTAIA 224 (758)
T ss_dssp SSCEEE----EECCTTSSHHHHH
T ss_pred CCCCeE----EEcCCCCCHHHHH
Confidence 567888 9999999999653
No 480
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=36.33 E-value=13 Score=33.77 Aligned_cols=19 Identities=5% Similarity=-0.160 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||...
T Consensus 28 ~Ge~~~----llGpnGsGKSTLL 46 (362)
T 2it1_A 28 DGEFMA----LLGPSGSGKSTLL 46 (362)
T ss_dssp TTCEEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EECCCCchHHHHH
Confidence 677777 8999999999753
No 481
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=36.28 E-value=12 Score=34.30 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=15.0
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|+-+. +.||+|||||.-
T Consensus 168 ~~~~i~----l~G~~GsGKSTl 185 (377)
T 1svm_A 168 KKRYWL----FKGPIDSGKTTL 185 (377)
T ss_dssp TCCEEE----EECSTTSSHHHH
T ss_pred CCCEEE----EECCCCCCHHHH
Confidence 566778 999999999864
No 482
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=36.07 E-value=13 Score=33.01 Aligned_cols=19 Identities=0% Similarity=-0.172 Sum_probs=14.0
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.++-+. +++++|||||...
T Consensus 103 ~~~vi~----ivG~~GsGKTTl~ 121 (306)
T 1vma_A 103 PPFVIM----VVGVNGTGKTTSC 121 (306)
T ss_dssp SCEEEE----EECCTTSSHHHHH
T ss_pred CCeEEE----EEcCCCChHHHHH
Confidence 344456 8999999999643
No 483
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=36.06 E-value=6.9 Score=31.93 Aligned_cols=12 Identities=0% Similarity=-0.316 Sum_probs=10.6
Q ss_pred eeccCCChhHHH
Q psy10677 192 KKAEVQSRSVFT 203 (317)
Q Consensus 192 ~~a~tGsGKTla 203 (317)
+.|+.|||||..
T Consensus 5 i~G~~GsGKsTl 16 (214)
T 1gtv_A 5 IEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEHHHH
T ss_pred EEcCCCCCHHHH
Confidence 889999999964
No 484
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=35.73 E-value=12 Score=31.44 Aligned_cols=11 Identities=9% Similarity=-0.333 Sum_probs=9.9
Q ss_pred eeccCCChhHH
Q psy10677 192 KKAEVQSRSVF 202 (317)
Q Consensus 192 ~~a~tGsGKTl 202 (317)
+.||+||||+.
T Consensus 34 llGpPGsGKgT 44 (217)
T 3umf_A 34 VLGGPGSGKGT 44 (217)
T ss_dssp EECCTTCCHHH
T ss_pred EECCCCCCHHH
Confidence 88999999965
No 485
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=35.50 E-value=13 Score=33.13 Aligned_cols=13 Identities=0% Similarity=-0.337 Sum_probs=11.4
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.||+|+|||...
T Consensus 43 l~G~~G~GKT~la 55 (373)
T 1jr3_A 43 FSGTRGVGKTSIA 55 (373)
T ss_dssp EESCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 9999999999653
No 486
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=35.47 E-value=13 Score=32.30 Aligned_cols=13 Identities=0% Similarity=-0.299 Sum_probs=11.1
Q ss_pred eeccCCChhHHHH
Q psy10677 192 KKAEVQSRSVFTY 204 (317)
Q Consensus 192 ~~a~tGsGKTla~ 204 (317)
+.||+|+|||...
T Consensus 7 lvG~nGaGKSTLl 19 (270)
T 3sop_A 7 VVGQSGLGKSTLV 19 (270)
T ss_dssp EEESSSSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 8899999998653
No 487
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=35.35 E-value=12 Score=33.91 Aligned_cols=19 Identities=5% Similarity=0.085 Sum_probs=15.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||...
T Consensus 25 ~Ge~~~----llGpnGsGKSTLL 43 (348)
T 3d31_A 25 SGEYFV----ILGPTGAGKTLFL 43 (348)
T ss_dssp TTCEEE----EECCCTHHHHHHH
T ss_pred CCCEEE----EECCCCccHHHHH
Confidence 677777 8999999999753
No 488
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.32 E-value=15 Score=31.77 Aligned_cols=15 Identities=7% Similarity=-0.075 Sum_probs=12.7
Q ss_pred CcccccceeccCCChhHHH
Q psy10677 185 KFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 185 dvi~~~~~~a~tGsGKTla 203 (317)
.++ +.||+|+|||..
T Consensus 44 ~~l----l~G~~G~GKt~l 58 (323)
T 1sxj_B 44 HMI----ISGMPGIGKTTS 58 (323)
T ss_dssp CEE----EECSTTSSHHHH
T ss_pred eEE----EECcCCCCHHHH
Confidence 377 999999999964
No 489
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=35.27 E-value=12 Score=36.17 Aligned_cols=19 Identities=11% Similarity=-0.115 Sum_probs=16.3
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.||+|||||.-.
T Consensus 368 ~G~~~~----ivG~sGsGKSTLl 386 (582)
T 3b60_A 368 AGKTVA----LVGRSGSGKSTIA 386 (582)
T ss_dssp TTCEEE----EEECTTSSHHHHH
T ss_pred CCCEEE----EECCCCCCHHHHH
Confidence 788888 9999999999644
No 490
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=35.20 E-value=15 Score=30.68 Aligned_cols=19 Identities=5% Similarity=-0.062 Sum_probs=14.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. ++++.|||||...
T Consensus 15 ~~~~i~----i~G~~gsGKst~~ 33 (236)
T 1q3t_A 15 KTIQIA----IDGPASSGKSTVA 33 (236)
T ss_dssp CCCEEE----EECSSCSSHHHHH
T ss_pred CCcEEE----EECCCCCCHHHHH
Confidence 445566 8999999999754
No 491
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=35.20 E-value=11 Score=29.83 Aligned_cols=17 Identities=18% Similarity=0.008 Sum_probs=13.7
Q ss_pred cCcCcccccceeccCCChhHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVF 202 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTl 202 (317)
....++ +.|++|+|||.
T Consensus 20 ~~~~i~----v~G~~~~GKSs 36 (181)
T 2h17_A 20 QEHKVI----IVGLDNAGKTT 36 (181)
T ss_dssp -CEEEE----EEEETTSSHHH
T ss_pred ceeEEE----EECCCCCCHHH
Confidence 555778 99999999994
No 492
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=35.10 E-value=15 Score=32.81 Aligned_cols=21 Identities=5% Similarity=-0.091 Sum_probs=16.9
Q ss_pred cCcCcccccceeccCCChhH-HHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSV-FTYIL 206 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKT-la~~l 206 (317)
.|+-++ +.|++|+||+ +|..+
T Consensus 143 ~g~~vl----~~G~sG~GKSt~a~~l 164 (314)
T 1ko7_A 143 YGVGVL----ITGDSGIGKSETALEL 164 (314)
T ss_dssp TTEEEE----EEESTTSSHHHHHHHH
T ss_pred CCEEEE----EEeCCCCCHHHHHHHH
Confidence 688899 9999999995 55433
No 493
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=35.02 E-value=14 Score=33.09 Aligned_cols=21 Identities=19% Similarity=0.067 Sum_probs=14.5
Q ss_pred eeccCCChhHHHHHHHHHHHHHc
Q psy10677 192 KKAEVQSRSVFTYILPALYHILK 214 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~ 214 (317)
+.||+|||||... -.|..+..
T Consensus 97 I~GpsGSGKSTl~--~~L~~ll~ 117 (321)
T 3tqc_A 97 IAGSVAVGKSTTS--RVLKALLS 117 (321)
T ss_dssp EECCTTSSHHHHH--HHHHHHHT
T ss_pred EECCCCCCHHHHH--HHHHHHhc
Confidence 7899999999753 33444443
No 494
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=35.01 E-value=14 Score=33.69 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=15.7
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||...
T Consensus 28 ~Ge~~~----llGpnGsGKSTLL 46 (372)
T 1g29_1 28 DGEFMI----LLGPSGCGKTTTL 46 (372)
T ss_dssp TTCEEE----EECSTTSSHHHHH
T ss_pred CCCEEE----EECCCCcHHHHHH
Confidence 677777 8999999999753
No 495
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=34.72 E-value=22 Score=33.84 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=20.2
Q ss_pred cCcCcccccceeccCCChhHHHHHHHHHHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTYILPALYHIL 213 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~ 213 (317)
.|.-+. +.+|+|||||.-...-++.-+.
T Consensus 38 ~Ge~~~----l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGRSTL----VSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTSEEE----EEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEE----EEcCCCCCHHHHHHHHHHHHHH
Confidence 778888 9999999999765443334443
No 496
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=34.56 E-value=15 Score=33.61 Aligned_cols=19 Identities=5% Similarity=-0.038 Sum_probs=15.6
Q ss_pred cCcCcccccceeccCCChhHHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFTY 204 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla~ 204 (317)
.|.-+. +.+|+|||||...
T Consensus 36 ~Ge~~~----llGpnGsGKSTLL 54 (372)
T 1v43_A 36 DGEFLV----LLGPSGCGKTTTL 54 (372)
T ss_dssp TTCEEE----EECCTTSSHHHHH
T ss_pred CCCEEE----EECCCCChHHHHH
Confidence 677777 8999999999743
No 497
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=34.49 E-value=30 Score=29.43 Aligned_cols=34 Identities=9% Similarity=-0.055 Sum_probs=22.4
Q ss_pred eeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcH
Q psy10677 192 KKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTR 233 (317)
Q Consensus 192 ~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~Ptr 233 (317)
.+|+-|||||.+.+=- +.+... .+-+++++-|..
T Consensus 24 ~~G~MgsGKTT~lL~~-~~r~~~-------~g~kvli~kp~~ 57 (234)
T 2orv_A 24 ILGPMFSGKSTELMRR-VRRFQI-------AQYKCLVIKYAK 57 (234)
T ss_dssp EECCTTSCHHHHHHHH-HHHHHT-------TTCCEEEEEETT
T ss_pred EECCCCCcHHHHHHHH-HHHHHH-------CCCeEEEEeecC
Confidence 6788899999765444 333332 356788887754
No 498
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=34.17 E-value=54 Score=26.85 Aligned_cols=64 Identities=8% Similarity=-0.013 Sum_probs=44.1
Q ss_pred CchhhhhccccccccCcCcccccceeccCCChhHHHHHHHHHHHHHcCCCCCCCCCceEEEEcCcHHHHHHHHHH
Q psy10677 168 GDKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242 (317)
Q Consensus 168 t~iQ~~~ip~~l~~~g~dvi~~~~~~a~tGsGKTla~~lp~l~~l~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 242 (317)
++-|..+++.++.....=.+ +.++-||+|+-..+--++.--.. .|-++.+|+|+.+-+....+.
T Consensus 36 ~~~~~~a~~~l~~s~~~~~i----v~g~ggs~~~~~~~a~L~~~a~~-------~Gr~V~vLAp~~~s~~~l~~~ 99 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAI----VSGQGGAAGQRERVAELVMMARE-------QGREVQIIAADRRSQMNMKQD 99 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEEC----CBCSSCSHHHHHHHHHHHHHHHH-------TTCCEEEECSTTHHHHHHSCT
T ss_pred CccchhHHHHHhccCCceEE----EecccchHHHHHHHHHHHHHHHh-------cCeEEEEEcCchHHHHHHHhh
Confidence 56688999888832222334 56889999998875555443333 477999999998877665544
No 499
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=33.84 E-value=15 Score=33.04 Aligned_cols=17 Identities=18% Similarity=-0.038 Sum_probs=14.1
Q ss_pred CcCcccccceeccCCChhHHH
Q psy10677 183 AKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 183 g~dvi~~~~~~a~tGsGKTla 203 (317)
|.-+. +.|++|||||..
T Consensus 170 g~k~~----IvG~nGsGKSTL 186 (365)
T 1lw7_A 170 AKTVA----ILGGESSGKSVL 186 (365)
T ss_dssp CEEEE----EECCTTSHHHHH
T ss_pred hCeEE----EECCCCCCHHHH
Confidence 56667 899999999864
No 500
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=33.69 E-value=13 Score=31.21 Aligned_cols=18 Identities=6% Similarity=-0.165 Sum_probs=14.7
Q ss_pred cCcCcccccceeccCCChhHHH
Q psy10677 182 QAKKFISVLQKKAEVQSRSVFT 203 (317)
Q Consensus 182 ~g~dvi~~~~~~a~tGsGKTla 203 (317)
.|.-++ +.|+.|||||..
T Consensus 25 ~g~~i~----i~G~~GsGKsT~ 42 (229)
T 4eaq_A 25 MSAFIT----FEGPEGSGKTTV 42 (229)
T ss_dssp CCEEEE----EECCTTSCHHHH
T ss_pred CCeEEE----EEcCCCCCHHHH
Confidence 566677 999999999864
Done!