RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10677
         (317 letters)



>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional.
          Length = 545

 Score =  122 bits (307), Expect = 4e-31
 Identities = 61/163 (37%), Positives = 87/163 (53%), Gaps = 16/163 (9%)

Query: 110 TKEEIDSFRKEHNITLI-GQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCG 168
           + +E+D  RKE  IT+I G+N+PKPV + + T+ P YIL  +K         +    +  
Sbjct: 104 SSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLK---------NAGFTEPT 154

Query: 169 DKESKNWTIPLNFQAKKFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALV 228
             + + W I L+   +  I      AE  S     ++LPA+ HI   P L  GDGPI LV
Sbjct: 155 PIQVQGWPIALS--GRDMIG----IAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLV 208

Query: 229 LAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQVILLR 271
           LAPTRELA+QI+   + F  + +IR+   YGG  K  Q+  LR
Sbjct: 209 LAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALR 251



 Score = 71.3 bits (175), Expect = 9e-14
 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 1/53 (1%)

Query: 1   MWSATWPREIQKLAKEFLSD-PIQLNVGSANLAANPNIKQFVEICHEYEKPAK 52
           MWSATWP+E+Q LA++   + P+ +NVGS +L A  NIKQ V +  E+EK  K
Sbjct: 313 MWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGK 365


>gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases. A diverse family of proteins
           involved in ATP-dependent RNA unwinding, needed in a
           variety of cellular processes including splicing,
           ribosome biogenesis and RNA degradation. The name
           derives from the sequence of the Walker  B motif (motif
           II). This domain contains the ATP- binding region.
          Length = 203

 Score = 76.8 bits (190), Expect = 1e-16
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 202 FTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261
             +++P L  +   PK    DGP AL+LAPTRELA QI  V     +   ++   +YGGT
Sbjct: 51  AAFLIPILEKLDPSPKK---DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGT 107

Query: 262 SKMYQVILLR 271
           S   Q+  L+
Sbjct: 108 SIDKQIRKLK 117



 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 10/25 (40%), Positives = 21/25 (84%)

Query: 1   MWSATWPREIQKLAKEFLSDPIQLN 25
           ++SAT P+E++ LA++FL +P+++ 
Sbjct: 179 LFSATMPKEVRDLARKFLRNPVRIL 203


>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
           replication, recombination, and repair / Transcription /
           Translation, ribosomal structure and biogenesis].
          Length = 513

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 202 FTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR-TMRIRHACLYGG 260
             ++LP L  ILK     E     AL+LAPTRELA QI   +    +    +R A +YGG
Sbjct: 81  AAFLLPLLQKILK---SVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGG 137

Query: 261 TSKMYQVILLR 271
            S   Q+  L+
Sbjct: 138 VSIRKQIEALK 148



 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 1   MWSATWPREIQKLAKEFLSDPIQLNVGSANLA-ANPNIKQFVEICHEYEK 49
           ++SAT P +I++LA+ +L+DP+++ V    L      IKQF       E+
Sbjct: 210 LFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEE 259


>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase.  Members of this family
           include the DEAD and DEAH box helicases. Helicases are
           involved in unwinding nucleic acids. The DEAD box
           helicases are involved in various aspects of RNA
           metabolism, including nuclear transcription, pre mRNA
           splicing, ribosome biogenesis, nucleocytoplasmic
           transport, translation, RNA decay and organellar gene
           expression.
          Length = 169

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 204 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 263
           ++LP L  +L      +  GP ALVLAPTRELA+QI   +    + + +R A L GGTS 
Sbjct: 31  FLLPILQALLP-----KKGGPQALVLAPTRELAEQIYEELKKLFKILGLRVALLTGGTSL 85

Query: 264 MYQVILLR 271
             Q   L+
Sbjct: 86  KEQARKLK 93


>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily. 
          Length = 201

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 202 FTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 261
              +LPAL  + +      G G   LVL PTRELA+Q    +     ++ ++   LYGG 
Sbjct: 39  LAALLPALEALKR------GKGGRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGD 92

Query: 262 SKMYQ 266
           SK  Q
Sbjct: 93  SKREQ 97



 Score = 34.8 bits (80), Expect = 0.030
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 1   MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQF 40
           + SAT P EI+ L + FL+DP+ ++VG         I+QF
Sbjct: 165 LLSATPPEEIENLLELFLNDPVFIDVGF---TPLEPIEQF 201


>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.
          Length = 456

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 202 FTYILPALYHILKMPKLEEGDGPI-ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 260
           FT  LP L H++      +G  P+ AL+L PTRELA QI   +  +S+ + IR   ++GG
Sbjct: 55  FT--LPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGG 112

Query: 261 TSKMYQVILLR 271
            S   Q++ LR
Sbjct: 113 VSINPQMMKLR 123



 Score = 31.3 bits (71), Expect = 0.72
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 1   MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFV 41
           ++SAT+  +I+ LA++ L +P+++ V   N  A+  + Q V
Sbjct: 185 LFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHV 224


>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
           of proteins involved in ATP-dependent RNA or DNA
           unwinding. This domain contains the ATP-binding region.
          Length = 144

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 202 FTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS-IFSRTMRIRHACLYGG 260
              +LP L  +          G   LVLAPTRELA Q+   +  +F   +++    L GG
Sbjct: 15  LAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGEGIKV--GYLIGG 66

Query: 261 TSKMYQVILLR 271
           TS   Q  LL 
Sbjct: 67  TSIKQQEKLLS 77


>gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional.
          Length = 401

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 22/38 (57%), Positives = 28/38 (73%), Gaps = 2/38 (5%)

Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTS 262
           AL+LAPTRELAQQIQ V+      +++R HAC+ GGT 
Sbjct: 99  ALILAPTRELAQQIQKVVLALGDYLKVRCHACV-GGTV 135



 Score = 29.8 bits (67), Expect = 2.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 1   MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQF 40
           ++SAT P EI +L  +F+ DP ++ V    L     I+QF
Sbjct: 206 LFSATMPNEILELTTKFMRDPKRILVKKDELTLE-GIRQF 244


>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.
          Length = 629

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 12/82 (14%)

Query: 194 AEVQSRSVFTYILPALYHI---LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM 250
           A+  S     + LP L+++   LK P++        LVLAPTRELA Q+   ++ FS+ M
Sbjct: 50  AQTGSGKTAAFSLPLLHNLDPELKAPQI--------LVLAPTRELAVQVAEAMTDFSKHM 101

Query: 251 R-IRHACLYGGTSKMYQVILLR 271
           R +    LYGG     Q+  LR
Sbjct: 102 RGVNVVALYGGQRYDVQLRALR 123



 Score = 30.2 bits (68), Expect = 1.6
 Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 1   MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQ 39
           ++SAT P  I+++ + F+ +P ++ + S+ +   P+I Q
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSS-VTTRPDISQ 222


>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
          Length = 434

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 204 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQI 239
           ++LPAL H+L  P+ + G  P  L+L PTRELA Q+
Sbjct: 55  FLLPALQHLLDFPRRKSGP-PRILILTPTRELAMQV 89


>gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional.
          Length = 460

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 3   SATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQ-FVEI 43
           SAT+P  I  +++ F  DP+++ V S +    P I+Q F E+
Sbjct: 185 SATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEV 224



 Score = 32.1 bits (74), Expect = 0.33
 Identities = 11/14 (78%), Positives = 12/14 (85%)

Query: 226 ALVLAPTRELAQQI 239
           ALVL PTRELA Q+
Sbjct: 75  ALVLCPTRELADQV 88


>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
          Length = 572

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 193 KAEVQSRSVFTYILPALYHILKMPKL--EEGDGPIALVLAPTRELAQQIQAVISIFSRTM 250
           +A+  +     +++  +  +L  P L   + + P AL+LAPTRELA QI      F   +
Sbjct: 52  QAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL 111

Query: 251 RIRHACLYGGTSKMYQVILLR 271
            +R A +YGG     Q  LL+
Sbjct: 112 GLRFALVYGGVDYDKQRELLQ 132


>gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional.
          Length = 423

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 211 HILKMPKLEEG--DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTS 262
           ++L  P  E+   + P AL++APTRELA QI A     ++   ++    YGG  
Sbjct: 69  YLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDG 122


>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase;
           Provisional.
          Length = 518

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 29/165 (17%), Positives = 66/165 (40%), Gaps = 27/165 (16%)

Query: 110 TKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGD 169
           +  + +  R++  I + G+ +P P+ +     +P  +L  +                   
Sbjct: 96  SSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNL------------------- 136

Query: 170 KESKNWTIPLNFQAKKFISVLQKK-----AEVQSRSVFTYILPALYH--ILKMPKLEEGD 222
            E+  +  P   Q +   + L  +     A+  S    ++++P +     ++     E  
Sbjct: 137 -ETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195

Query: 223 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQV 267
            P+A+VL PTREL  Q++    +  + +  + A + GG +   Q+
Sbjct: 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL 240



 Score = 35.1 bits (81), Expect = 0.037
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 1   MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKPAKWWD---SN 57
           ++SAT   E++K A     D I +++G+ N   N  +KQ        +K  K +D   S 
Sbjct: 305 LFSATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSK 363

Query: 58  NGHYPKSVRFV 68
               P +V FV
Sbjct: 364 QHFKPPAVVFV 374


>gnl|CDD|233376 TIGR01363, strep_his_triad, streptococcal histidine triad protein. 
           This model represents the N-terminal half of a family of
           Streptococcal proteins that contain a signal peptide and
           then up to five repeats of a region that includes a
           His-X-X-His-X-His (histidine triad) motif. Three repeats
           are found in the seed alignment. Members of this family
           from Streptococcus pneumoniae are suggested to cleave
           human C3, and the member PhpA has been shown in vaccine
           studies to be a protective antigen in mice [Cellular
           processes, Pathogenesis].
          Length = 348

 Score = 33.8 bits (77), Expect = 0.11
 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 13/107 (12%)

Query: 127 GQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKN--------WTIP 178
           G       +   + +IP     P +P      +      +  + + K         + +P
Sbjct: 239 GARPSDYRQGSRKASIPDVTPNPGQPAPPRPNDASQNKTQRQEFQGKTIKSLLDQLYRLP 298

Query: 179 LNFQAKKFISVLQKKAEVQSRSVFTYILPA--LYHIL---KMPKLEE 220
           L+++  +   ++   A++ SR+     +P    YH +   +M +LE 
Sbjct: 299 LSYRHVESDGLIFDPAQITSRTARGVAVPHGDHYHFIPYSQMSELEM 345


>gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative
           DEAH-box helicase.  A conserved gene neighborhood widely
           spread in the Actinobacteria contains this
           uncharacterized DEAH-box family helicase encoded
           convergently towards an operon of genes for protein
           homologous to type II secretion and pilus formation
           proteins. The context suggests that this helicase may
           play a role in conjugal transfer of DNA.
          Length = 742

 Score = 32.8 bits (75), Expect = 0.27
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 10/60 (16%)

Query: 204 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQ-QIQAVISIFSRTMRIRHACLYGGTS 262
           Y LP L        L +     AL LAPT+ LA  Q++AV  +   T+R      Y G +
Sbjct: 68  YQLPVL------SALADDPRATALYLAPTKALAADQLRAVREL---TLRGVRPATYDGDT 118


>gnl|CDD|217512 pfam03359, GKAP, Guanylate-kinase-associated protein (GKAP)
           protein. 
          Length = 342

 Score = 30.9 bits (70), Expect = 0.73
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 14/67 (20%)

Query: 2   WSATWPREIQ--KLAKEFLSDPIQLNVGSANLAANPNIKQFVEICHEYEKP--------- 50
             A   +E +  +L +E L   I+  VG A L  +   +QF  +C +   P         
Sbjct: 179 LCAEMEKEAEENELPEEVL-GLIRTAVGQARLLMSQKFQQFEGLCDQNLNPRAEPRTTSQ 237

Query: 51  --AKWWD 55
             A +WD
Sbjct: 238 DLAGFWD 244


>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
          Length = 475

 Score = 29.9 bits (67), Expect = 1.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)

Query: 224 PIALVLAPTRELAQQI 239
           P AL++APTREL  QI
Sbjct: 163 PRALIIAPTRELVVQI 178



 Score = 29.1 bits (65), Expect = 3.8
 Identities = 12/41 (29%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 1   MWSATWPREIQKLAKEFLSDPIQLNVGSANLAANPNIKQFV 41
           ++SAT+  ++  LAK++ +DP  + +   N+A++  ++Q V
Sbjct: 275 LFSATFTDDVMNLAKQWTTDPAIVEIEPENVASD-TVEQHV 314


>gnl|CDD|214971 smart01008, Ald_Xan_dh_C, Aldehyde oxidase and xanthine
           dehydrogenase, a/b hammerhead domain.  Aldehyde oxidase
           catalyses the conversion of an aldehyde in the presence
           of oxygen and water to an acid and hydrogen peroxide.
           The enzyme is a homodimer, and requires FAD, molybdenum
           and two 2FE-2S clusters as cofactors. Xanthine
           dehydrogenase catalyses the hydrogenation of xanthine to
           urate, and also requires FAD, molybdenum and two 2FE-2S
           clusters as cofactors. This activity is often found in a
           bifunctional enzyme with xanthine oxidase activity too.
           The enzyme can be converted from the dehydrogenase form
           to the oxidase form irreversibly by proteolysis or
           reversibly through oxidation of sulphydryl groups.
          Length = 107

 Score = 27.5 bits (62), Expect = 3.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 224 PIALVLAPTRELAQQ 238
           P+A V+A T E A+ 
Sbjct: 80  PVAAVVAETEEAARD 94


>gnl|CDD|213917 TIGR04304, GeoRSP_SPASM, GeoRSP system SPASM domain protein.
           Members of this protein family are encoded by one of two
           consecutive genes for SPASM domain proteins. The two are
           closely homologous in the SPASM domain regions, and also
           in a small N-terminal region, but the other family
           (TIGR04303) has an intact radical SAM domain (pfam04055)
           that this "quasi-rSAM" protein lacks. A PqqD-family
           protein, TIGR04302, is always adjacent.
          Length = 293

 Score = 28.7 bits (64), Expect = 4.1
 Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 10/48 (20%)

Query: 205 ILPALYH----------ILKMPKLEEGDGPIALVLAPTRELAQQIQAV 242
            LP L            +L M +L  G+ P  L     REL+  + A 
Sbjct: 128 ELPELVSYCLDRGITRLVLPMQRLYGGEPPFFLTRNERRELSNALDAE 175


>gnl|CDD|182157 PRK09940, PRK09940, transcriptional regulator YdeO; Provisional.
          Length = 253

 Score = 28.1 bits (62), Expect = 5.6
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 95  VPSYPDPSVNHLQ--GKTKEEIDSFRKEHNITLIGQNIPKPVKTLDETNIPSYILGPMKP 152
           V ++ +P   H +  G  +  I  + +  NI  +   +P P K L  +N+P+ +L  M  
Sbjct: 37  VRTHFEPYERHFKEIGFNENTIKKYLQCTNIQTV--TVPVPAKFLRASNVPTGLLNEMIA 94

Query: 153 KTTNNENNHN 162
              + E NH+
Sbjct: 95  YLNSEERNHH 104


>gnl|CDD|224621 COG1707, COG1707, ACT domain-containing protein [General function
           prediction only].
          Length = 218

 Score = 27.9 bits (62), Expect = 7.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 108 GKTKEEIDSFRKEHNITLIGQNIPKPV 134
           GK  E +   R+EH I +I  N+   V
Sbjct: 154 GKITEAVKELREEHGIPVISLNMFGSV 180


>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
           subunit alpha; Reviewed.
          Length = 708

 Score = 27.6 bits (62), Expect = 9.9
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 80  SFSLPFRDDKTSVVTVPSYPDPSVNHLQGKTKEEI 114
           +F+L  R+D  +V+T+   P   +N L+ +  E++
Sbjct: 6   AFTLNVREDNIAVITI-DVPGEKMNTLKAEFAEQV 39


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0825    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,756,926
Number of extensions: 1461112
Number of successful extensions: 1378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1370
Number of HSP's successfully gapped: 39
Length of query: 317
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 220
Effective length of database: 6,635,264
Effective search space: 1459758080
Effective search space used: 1459758080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)