RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10677
(317 letters)
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 46.8 bits (110), Expect = 1e-06
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVG 27
M+SAT+P+EIQKLA +FL + I + VG
Sbjct: 212 MFSATFPKEIQKLAADFLYNYIFMTVG 238
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 45.0 bits (105), Expect = 3e-06
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVG 27
++SAT+P +++ + L P ++N+
Sbjct: 179 LFSATFPLTVKEFMVKHLHKPYEINLM 205
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 44.4 bits (104), Expect = 5e-06
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVG 27
+ SAT P EI ++ +F++DPI++ V
Sbjct: 195 LISATLPHEILEMTNKFMTDPIRILVK 221
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 44.1 bits (103), Expect = 6e-06
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNV 26
M+SAT +EI+ + ++F+ DP+++ V
Sbjct: 182 MFSATLSKEIRPVCRKFMQDPMEIFV 207
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 43.1 bits (100), Expect = 1e-05
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNV 26
++SAT P +++ K+++ +P ++V
Sbjct: 183 VFSATIPEKLKPFLKKYMENPTFVHV 208
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 43.3 bits (101), Expect = 1e-05
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVG 27
+ SAT P ++ ++ K+F+ DPI++ V
Sbjct: 191 LLSATMPSDVLEVTKKFMRDPIRILVK 217
Score = 35.6 bits (81), Expect = 0.005
Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 20/147 (13%)
Query: 125 LIGQNIPKPVKTLDETNIPSYILGPMKPKTTNNENNHNKNKKCGDKESKNWTIPLNFQAK 184
+I N + V + D+ N+ +L + + + P Q +
Sbjct: 2 VIESNWNEIVDSFDDMNLSESLLRGIY--------------------AYGFEKPSAIQQR 41
Query: 185 KFISVLQKKAEVQSRSVFTYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 244
+ ++ + T + + ALVLAPTRELAQQIQ V+
Sbjct: 42 AILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVM 101
Query: 245 IFSRTMRIRHACLYGGTSKMYQVILLR 271
M GGT+ +V L+
Sbjct: 102 ALGDYMGASCHACIGGTNVRAEVQKLQ 128
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 42.7 bits (100), Expect = 2e-05
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNV 26
++SAT PREI LAK+++ D +
Sbjct: 181 LFSATMPREILNLAKKYMGDYSFIKA 206
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 42.3 bits (98), Expect = 3e-05
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLN 25
++SAT+P +QK L P ++N
Sbjct: 182 LYSATFPLSVQKFMNSHLEKPYEIN 206
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 41.3 bits (96), Expect = 5e-05
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNV 26
+ SAT P ++ ++ +F+ +P+++ V
Sbjct: 187 LLSATMPNDVLEVTTKFMRNPVRILV 212
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 40.3 bits (93), Expect = 2e-04
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 204 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 263
Y+ + +K G L+LAPTR +A +++ + + +
Sbjct: 26 YLPAIVREAIK-------RGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAEHTGRE 78
Query: 264 MYQVILLRIL 273
+ ++
Sbjct: 79 IVDLMCHATF 88
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 29.5 bits (65), Expect = 0.43
Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 1 MWSATWPREIQKLAKEFLSDPIQLNVGSANL 31
+ +AT + + L + ++GS+ +
Sbjct: 209 VSTATAKKGKKAELFRQL---LNFDIGSSRI 236
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 85
Score = 26.9 bits (60), Expect = 0.86
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 167 CGDKESKNWTIPLNFQAKKFISVL 190
G KE + WT+ + A K +V+
Sbjct: 7 AGVKEVRAWTVSVGATAPKAAAVI 30
>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 82
Score = 26.6 bits (59), Expect = 1.1
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 167 CGDKESKNWTIPLNFQA----KKFISVLQK---KAEVQS 198
CG+ E ++WTI +A + +K E+
Sbjct: 7 CGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMH 45
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 27.6 bits (60), Expect = 1.5
Identities = 11/101 (10%), Positives = 23/101 (22%), Gaps = 13/101 (12%)
Query: 171 ESKNWTIPLNFQAKKFISVLQKK-----AEVQSRSVFTYILPALYHILKMPKLEEGDGPI 225
+ + QA+ V K + + + +K K
Sbjct: 19 KEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSL------ 72
Query: 226 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ 266
+ P R LA + + + S+
Sbjct: 73 --YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEH 111
>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA
{Escherichia coli [TaxId: 562]}
Length = 511
Score = 27.8 bits (61), Expect = 2.1
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 73 GFLLSAVSFSLPFRDDKTSVVTVPSYPDPSV-----NHLQGKTKEEIDSFRKEH 121
G L + V + F D KT VP+ DP + Q ++ ++ F +
Sbjct: 9 GPLFNDVQNAKLFPDQKTFADAVPNS-DPLMILADYRMQQNQSGFDLRHFVNVN 61
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
(P-protein) {Thermus thermophilus [TaxId: 274]}
Length = 471
Score = 25.9 bits (56), Expect = 7.0
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 16/58 (27%)
Query: 97 SYPDPSVNHL-----QGKTKEEIDSF-------RKEHNITLIGQNIPK--PVKTLDET 140
+P L + + KE +++F K+ L +N P PV+ LDE
Sbjct: 404 YFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPKEWL--ENAPYSTPVRRLDEL 459
>d1v97a3 d.41.1.1 (A:537-694) Xanthine oxidase, domain 5 (?) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 25.1 bits (54), Expect = 8.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 224 PIALVLAPTRELAQQIQAVISI 245
I V+A T E A++ V+ +
Sbjct: 130 IIGAVVADTPEHAERAAHVVKV 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.398
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,146,883
Number of extensions: 51058
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 23
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)