BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10678
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q52KZ7|SBP1A_XENLA Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-a PE=2
SV=1
Length = 472
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 52/63 (82%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
++TDILISLDDR+LY SNW+HGDIRQYDI DT +P LVGQIFLGG IQ VTV++D
Sbjct: 308 GLITDILISLDDRFLYFSNWLHGDIRQYDITDTRNPKLVGQIFLGGSIQRGGPVTVLEDK 367
Query: 131 ELD 133
EL+
Sbjct: 368 ELE 370
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 9 CSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKTYQQVRNTL 66
C GPGY++P+DAM+ GPRE ++Y+ CI + PDYLA +DVDP+S +Y QV + L
Sbjct: 4 CGSCGPGYKSPLDAMK-GPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPSYSQVIHRL 62
>sp|Q6PHD9|SBP1_DANRE Selenium-binding protein 1 OS=Danio rerio GN=selenbp1 PE=2 SV=1
Length = 457
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 50/63 (79%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
++TDILISLDDR+LY SNW+HGDIRQYDI D +P +VGQ+FLGG + D V V++D
Sbjct: 309 GLITDILISLDDRFLYFSNWLHGDIRQYDITDRKNPRMVGQVFLGGSVLKDGPVKVLEDK 368
Query: 131 ELD 133
ELD
Sbjct: 369 ELD 371
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Query: 6 TSCCSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKTYQQVR 63
S CSG GPGY+TP+DAM+ GPRE ++Y+ CI N Q PDYLA +D++PQS + +V
Sbjct: 2 ASTCSGCGPGYKTPLDAMK-GPREEIVYLPCIYRNTDIQKPDYLATVDINPQSPNFCKVI 60
Query: 64 NTL 66
+ L
Sbjct: 61 HRL 63
>sp|Q569D5|SBP1_XENTR Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2
SV=1
Length = 472
Score = 89.4 bits (220), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/63 (65%), Positives = 50/63 (79%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
++TDILISLDDR+LY SNW+HGDIRQYDI D +P LVGQIFLGG I VTV++D
Sbjct: 308 GLITDILISLDDRFLYFSNWLHGDIRQYDITDPRNPKLVGQIFLGGSILRGGPVTVLEDK 367
Query: 131 ELD 133
+L+
Sbjct: 368 DLE 370
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 9 CSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKTYQQVRNTL 66
C GPGY+TP+DAM+ GPRE +LY+ CI N PDYLA +DV+P+S Y QV + L
Sbjct: 4 CGSCGPGYKTPLDAMK-GPREEILYLPCIYRNTGINKPDYLATVDVNPKSPKYSQVIHRL 62
>sp|Q6DCH7|SBP1B_XENLA Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-b PE=2
SV=1
Length = 472
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 49/63 (77%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
++TDILISLDDR+LY SNW+HGDIRQYDI + +P LVGQIFLGG IQ V V +D
Sbjct: 308 GLITDILISLDDRFLYFSNWLHGDIRQYDITNIRNPKLVGQIFLGGSIQKGGPVAVQEDK 367
Query: 131 ELD 133
EL+
Sbjct: 368 ELE 370
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 9 CSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKTYQQVRNTL 66
C GPGY++P+DAM+ GPRE ++Y+ CI + PDYLA +DVDP+S TY QV + L
Sbjct: 4 CGSCGPGYKSPLDAMK-GPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPTYSQVIHRL 62
>sp|Q2KJ32|SBP1_BOVIN Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1
Length = 472
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 48/62 (77%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
+++TDIL+SLDDR+LY SNW+HGD+RQYDI D P LVGQIFLGG I V V++D
Sbjct: 308 SLITDILLSLDDRFLYFSNWLHGDLRQYDISDPKRPRLVGQIFLGGSIVKGGPVQVLEDQ 367
Query: 131 EL 132
EL
Sbjct: 368 EL 369
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 9 CSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKTYQQVRNTL 66
C GPGY +P++AM+ GPRE L+Y+ CI N + PDYLA +DV+P+S Y QV + L
Sbjct: 5 CGKCGPGYPSPLEAMK-GPREELVYLPCIYRNTGTEAPDYLATVDVNPKSPQYSQVIHRL 63
>sp|Q8VIF7|SBP1_RAT Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1
SV=1
Length = 472
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 46/62 (74%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
++TDIL+SLDDR+LY SNW+HGDIRQYDI + P L GQIFLGG I V V++D
Sbjct: 308 GLITDILLSLDDRFLYFSNWLHGDIRQYDISNPKKPRLTGQIFLGGSIVKGGSVQVLEDQ 367
Query: 131 EL 132
EL
Sbjct: 368 EL 369
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 9 CSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKTYQQVRNTL 66
C+ GPGY TP++AM+ GPRE ++Y+ CI N + PDYLA +DVDP+S Y QV + L
Sbjct: 5 CTKCGPGYATPLEAMK-GPREEIVYLPCIYRNTGIEAPDYLATVDVDPKSPHYSQVIHRL 63
>sp|P17563|SBP1_MOUSE Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2
Length = 472
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 46/62 (74%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
++TDIL+SLDDR+LY SNW+HGDIRQYDI + P L GQIFLGG I V V++D
Sbjct: 308 GLITDILLSLDDRFLYFSNWLHGDIRQYDISNPQKPRLAGQIFLGGSIVRGGSVQVLEDQ 367
Query: 131 EL 132
EL
Sbjct: 368 EL 369
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 9 CSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKTYQQVRNTL 66
C+ GPGY TP++AM+ GPRE ++Y+ CI N + PDYLA +DVDP+S Y QV + L
Sbjct: 5 CTKCGPGYSTPLEAMK-GPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRL 63
>sp|Q63836|SBP2_MOUSE Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2
Length = 472
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 46/62 (74%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
++TDIL+SLDDR+LY SNW+HGDIRQYDI + P L GQIFLGG I V V++D
Sbjct: 308 GLITDILLSLDDRFLYFSNWLHGDIRQYDISNPQKPRLTGQIFLGGSIVRGGSVQVLEDQ 367
Query: 131 EL 132
EL
Sbjct: 368 EL 369
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 9 CSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKTYQQVRNTL 66
C+ GPGY TP++AM+ GPRE ++Y+ CI N + PDYLA +DVDP+S Y QV + L
Sbjct: 5 CTKCGPGYPTPLEAMK-GPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRL 63
>sp|Q13228|SBP1_HUMAN Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2
Length = 472
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 46/62 (74%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
++TDIL+SLDDR+LY SNW+HGD+RQYDI D P L GQ+FLGG I V V++D
Sbjct: 308 GLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDE 367
Query: 131 EL 132
EL
Sbjct: 368 EL 369
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 9 CSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKTYQQVRNTL 66
C GPGY TP++AM+ GPRE ++Y+ CI N + PDYLA +DVDP+S Y QV + L
Sbjct: 5 CGNCGPGYSTPLEAMK-GPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRL 63
>sp|Q5RF48|SBP1_PONAB Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1
Length = 472
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 46/62 (74%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
++TDIL+SLDDR+LY SNW+HGD+RQYDI D P L GQ+F+GG I V V++D
Sbjct: 308 GLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFVGGSIVKGGPVQVLEDQ 367
Query: 131 EL 132
EL
Sbjct: 368 EL 369
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 9 CSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKTYQQVRNTL 66
C GPGY TP++AM+ GPRE ++Y+ CI N + PDYLA +DVDP+S Y QV + L
Sbjct: 5 CGNCGPGYSTPLEAMK-GPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRL 63
>sp|Q9LK38|SEBP3_ARATH Selenium-binding protein 3 OS=Arabidopsis thaliana GN=SBP3 PE=2
SV=1
Length = 480
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/59 (57%), Positives = 43/59 (72%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD 129
++TD LISLDDR+LY SNW+HGDIRQY+I D PVL GQI +GG +Q S V + +
Sbjct: 316 GLITDFLISLDDRFLYCSNWLHGDIRQYNIEDPKTPVLTGQIHVGGLVQKGSLVLALGE 374
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 9 CSGKGPGYRTPVDAMRYGPRETLLYVICIQP-NGQ-HPDYLAVIDVDPQSKTYQQVRNTL 66
C GPGY TP+ AM GPRE L+YV I GQ PDYLA +DV+P S TY V + L
Sbjct: 12 CCKSGPGYATPLLAMS-GPREKLIYVAAIYTGTGQAKPDYLATVDVEPSSSTYSSVIHRL 70
>sp|O23264|SEBP1_ARATH Selenium-binding protein 1 OS=Arabidopsis thaliana GN=SBP1 PE=1
SV=1
Length = 490
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD 129
++TD LISLDDR++Y NW+HGDIRQY+I D +PVL GQI++GG +Q S V + +
Sbjct: 326 GLITDFLISLDDRFIYFVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGSPVKAVGE 384
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 52/112 (46%), Gaps = 19/112 (16%)
Query: 8 CCSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKTYQQVRNT 65
CC GPGY TP+ AM GP E L+YV + PDYLA +DVDP S +Y V +
Sbjct: 21 CCKYGGPGYATPLAAMS-GPSEKLIYVTAVYTGTGIDKPDYLATVDVDPSSPSYSSVIH- 78
Query: 66 LRAGLAMVTDIL--------------ISLDDRYLYTSNWMHGDIRQYDIRDT 103
R + V D L S+D RYL + + G I D ++
Sbjct: 79 -RLPMPFVGDELHHSGWNSCSSCHGDASVDRRYLVLPSLISGRIYAIDTKEN 129
>sp|Q93WN0|SEBP2_ARATH Selenium-binding protein 2 OS=Arabidopsis thaliana GN=SBP2 PE=2
SV=1
Length = 487
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 40/52 (76%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDS 122
++TD LISLDDR+ Y NW+HGDIRQY+I D +PVL GQI++GG +Q S
Sbjct: 323 GLITDFLISLDDRFFYFVNWLHGDIRQYNIEDPKNPVLTGQIWVGGLLQKGS 374
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 8 CCSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKTYQQVRNT 65
CC GPGY TP+ AM GPRE L+YV + PDYLA +DVDP S T+ V +
Sbjct: 19 CCK-SGPGYATPLAAMA-GPREKLIYVTALYSGTGRDKPDYLATVDVDPSSPTFSSVIHR 76
Query: 66 LR 67
L+
Sbjct: 77 LK 78
>sp|A8X2U9|SBP_CAEBR Putative selenium-binding protein OS=Caenorhabditis briggsae
GN=CBG06685 PE=3 SV=2
Length = 514
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTV 126
A++TD++IS+DDR+LY ++HG + ++DI+D L G+I LGG S V +
Sbjct: 347 ALLTDMIISMDDRWLYVCGFLHGIVWRFDIQDPFRVSLHGKINLGGVFDSSPEVRI 402
>sp|Q21950|SBP_CAEEL Putative selenium-binding protein OS=Caenorhabditis elegans
GN=R11G10.2 PE=3 SV=2
Length = 542
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 71 AMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQS 120
A++TD++IS+DDR+LY ++HG + ++DI+D L G+I LGG S
Sbjct: 375 ALLTDMIISMDDRWLYVCGFLHGVLWRFDIQDPFRVSLHGKINLGGIFDS 424
>sp|Q88EQ6|YCGR_PSEPK Flagellar brake protein YcgR OS=Pseudomonas putida (strain KT2440)
GN=ycgR PE=1 SV=1
Length = 247
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 54 PQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDI 95
PQ TY Q RN RA L + + I LD +L + M G +
Sbjct: 114 PQEVTYHQRRNAFRAALKLSQLVDIILDGAHLKGNGAMRGKL 155
>sp|P47480|TIG_MYCGE Trigger factor OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=tig PE=1 SV=1
Length = 444
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 31 LLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNW 90
LL+ + PN Q PDY + D+ P +K + N LA ++ + D+ L
Sbjct: 113 LLFYFDLIPNFQLPDYKKIKDLTPLTKLTEAEFNNEIEKLAKTKSTMVDVSDKKL----- 167
Query: 91 MHGDIRQYD 99
+GDI D
Sbjct: 168 ANGDIAIID 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,762,885
Number of Sequences: 539616
Number of extensions: 2335182
Number of successful extensions: 4411
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4355
Number of HSP's gapped (non-prelim): 33
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)