Query psy10678
Match_columns 136
No_of_seqs 142 out of 329
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 15:51:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05694 SBP56: 56kDa selenium 100.0 1.8E-34 3.9E-39 253.9 8.1 105 12-134 3-125 (461)
2 KOG0918|consensus 100.0 2.9E-32 6.4E-37 238.5 10.4 58 78-135 319-376 (476)
3 PF05694 SBP56: 56kDa selenium 99.9 4.8E-25 1E-29 194.5 4.7 78 47-124 285-365 (461)
4 KOG0918|consensus 99.5 6.2E-15 1.3E-19 130.1 6.5 113 1-133 3-133 (476)
5 PF08309 LVIVD: LVIVD repeat; 97.7 7.9E-05 1.7E-09 46.8 4.5 33 79-112 8-40 (42)
6 TIGR02276 beta_rpt_yvtn 40-res 96.2 0.016 3.4E-07 33.8 4.8 34 80-116 1-34 (42)
7 PF02239 Cytochrom_D1: Cytochr 94.7 0.078 1.7E-06 45.6 5.9 65 45-118 16-80 (369)
8 TIGR02658 TTQ_MADH_Hv methylam 94.3 0.32 7E-06 42.3 8.8 82 26-116 256-343 (352)
9 PF02239 Cytochrom_D1: Cytochr 94.3 0.071 1.5E-06 45.8 4.7 91 13-119 33-123 (369)
10 PRK11028 6-phosphogluconolacto 93.7 0.4 8.6E-06 38.8 7.8 84 26-116 236-320 (330)
11 PRK11028 6-phosphogluconolacto 93.5 0.76 1.6E-05 37.2 9.1 91 18-115 176-273 (330)
12 PF09826 Beta_propel: Beta pro 92.7 0.38 8.2E-06 43.7 6.7 78 31-117 337-426 (521)
13 PF10282 Lactonase: Lactonase, 92.6 1 2.2E-05 37.6 8.7 79 26-110 253-332 (345)
14 TIGR02658 TTQ_MADH_Hv methylam 92.6 0.94 2E-05 39.5 8.8 92 19-116 49-148 (352)
15 COG5276 Uncharacterized conser 92.1 0.24 5.1E-06 43.7 4.6 45 70-117 86-130 (370)
16 COG5276 Uncharacterized conser 91.9 0.85 1.8E-05 40.4 7.7 77 29-117 138-215 (370)
17 COG2706 3-carboxymuconate cycl 91.2 0.95 2.1E-05 39.9 7.3 84 27-120 200-294 (346)
18 PF10282 Lactonase: Lactonase, 89.2 0.67 1.5E-05 38.6 4.6 45 74-118 248-293 (345)
19 PF09826 Beta_propel: Beta pro 88.9 0.54 1.2E-05 42.7 4.1 31 91-121 96-126 (521)
20 TIGR03866 PQQ_ABC_repeats PQQ- 86.6 7.1 0.00015 29.5 8.4 63 45-116 229-291 (300)
21 PF01731 Arylesterase: Arylest 82.6 1.5 3.1E-05 31.2 2.9 25 76-100 59-83 (86)
22 COG4880 Secreted protein conta 67.4 5.4 0.00012 37.1 3.1 26 92-117 448-473 (603)
23 PRK02888 nitrous-oxide reducta 67.1 17 0.00038 34.5 6.4 69 46-115 297-374 (635)
24 COG2706 3-carboxymuconate cycl 59.7 9.7 0.00021 33.8 3.1 24 78-101 152-175 (346)
25 PF06977 SdiA-regulated: SdiA- 53.2 44 0.00096 27.7 5.9 57 43-116 5-63 (248)
26 TIGR03866 PQQ_ABC_repeats PQQ- 44.6 1.3E+02 0.0029 22.5 7.6 25 78-102 80-104 (300)
27 PF08450 SGL: SMP-30/Gluconola 41.8 48 0.001 25.7 4.2 24 78-101 141-164 (246)
28 PF13570 PQQ_3: PQQ-like domai 41.4 39 0.00085 19.5 2.9 22 79-101 18-39 (40)
29 TIGR01221 rmlC dTDP-4-dehydror 39.3 44 0.00095 26.4 3.7 19 46-64 79-97 (176)
30 PF00400 WD40: WD domain, G-be 37.2 51 0.0011 18.0 2.8 21 78-99 19-39 (39)
31 PF00908 dTDP_sugar_isom: dTDP 36.3 41 0.00089 26.5 3.1 55 45-109 78-140 (176)
32 PF11302 DUF3104: Protein of u 35.4 35 0.00076 24.2 2.3 22 40-67 42-63 (75)
33 PHA02095 hypothetical protein 34.6 31 0.00068 24.8 1.9 38 30-67 39-79 (84)
34 COG3391 Uncharacterized conser 34.4 2.1E+02 0.0046 24.4 7.3 76 26-116 82-160 (381)
35 smart00135 LY Low-density lipo 32.7 54 0.0012 18.1 2.4 23 78-100 16-38 (43)
36 TIGR03032 conserved hypothetic 32.3 1.3E+02 0.0028 26.8 5.7 66 21-100 157-230 (335)
37 PF09112 N-glycanase_N: Peptid 30.2 17 0.00036 29.5 -0.1 37 81-118 125-161 (177)
38 COG0257 RpmJ Ribosomal protein 27.7 45 0.00097 20.9 1.6 15 91-105 19-33 (38)
39 PRK00465 rpmJ 50S ribosomal pr 27.4 43 0.00094 20.8 1.5 14 91-105 19-32 (37)
40 KOG0315|consensus 26.3 50 0.0011 28.9 2.2 29 78-108 48-77 (311)
41 PF06433 Me-amine-dh_H: Methyl 25.6 1.5E+02 0.0032 26.3 5.0 90 26-119 44-141 (342)
42 cd04864 LigD_Pol_like_1 LigD_P 24.3 56 0.0012 27.3 2.0 22 40-62 96-117 (228)
43 PF15232 DUF4585: Domain of un 23.1 94 0.002 22.1 2.7 23 82-108 8-30 (75)
44 KOG2315|consensus 22.6 2.9E+02 0.0063 26.3 6.4 25 78-102 319-345 (566)
45 KOG2110|consensus 22.1 65 0.0014 29.1 2.1 23 78-102 93-115 (391)
46 COG3864 Uncharacterized protei 21.9 41 0.00089 30.2 0.8 19 78-96 244-262 (396)
47 PF07433 DUF1513: Protein of u 21.8 3.7E+02 0.008 23.4 6.6 65 45-116 28-98 (305)
48 PF13964 Kelch_6: Kelch motif 21.4 1.1E+02 0.0023 18.2 2.4 20 81-100 11-35 (50)
49 KOG2055|consensus 21.3 1.5E+02 0.0032 27.8 4.2 39 60-100 335-373 (514)
50 PF03736 EPTP: EPTP domain; I 21.0 80 0.0017 19.0 1.8 19 81-99 24-43 (44)
51 KOG1645|consensus 20.8 86 0.0019 28.9 2.6 29 80-108 245-273 (463)
52 KOG0266|consensus 20.7 2.8E+02 0.006 24.3 5.7 22 78-100 296-317 (456)
53 COG1898 RfbC dTDP-4-dehydrorha 20.6 1.1E+02 0.0023 24.6 2.9 21 46-66 79-99 (173)
54 PF08662 eIF2A: Eukaryotic tra 20.6 1.1E+02 0.0023 23.8 2.8 27 75-101 105-133 (194)
55 PRK00831 rpmJ 50S ribosomal pr 20.3 79 0.0017 20.0 1.7 15 91-105 22-36 (41)
56 PF07646 Kelch_2: Kelch motif; 20.2 1.3E+02 0.0028 17.9 2.6 21 80-100 10-37 (49)
No 1
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=100.00 E-value=1.8e-34 Score=253.89 Aligned_cols=105 Identities=45% Similarity=0.693 Sum_probs=69.4
Q ss_pred CCCCCCCHHHHHhcCCCCceeEEEEecCCCC--CCCeEEEEeeCCCCCcccccccccc--------------cCCCcc-c
Q psy10678 12 KGPGYRTPVDAMRYGPRETLLYVICIQPNGQ--HPDYLAVIDVDPQSKTYQQVRNTLR--------------AGLAMV-T 74 (136)
Q Consensus 12 ~~~~y~sp~~Am~~ap~Ek~dYvatldvd~~--spdyl~VIdv~p~s~~y~ev~~~~~--------------a~~~~~-g 74 (136)
++|+|+||++||+ +|+|+++||+|++++.. .||||||||++|.|+||+||+||+. ||++|+ +
T Consensus 3 ~~p~y~SP~~A~~-~p~E~l~YV~~~~~~~~~~~pD~LatVDvdP~S~tYgqVIhrl~mp~~GDElHH~GWNaCSsc~~~ 81 (461)
T PF05694_consen 3 PGPGYASPLDAMK-GPREKLLYVWCLYPGTGIDKPDYLATVDVDPDSPTYGQVIHRLPMPNRGDELHHSGWNACSSCHYG 81 (461)
T ss_dssp --TT-SSHHHHHT-S---SEEEEEEE-TTTT-----EEEEEE--TTSTTTTSEEEEEE-SSS---B---EES--GGSTT-
T ss_pred CCcCCCCHHHHhh-CCCceEEEEEeecCCCCCCCCCeEEEEECCCCCCCcccEEEEEeCCCCCCccccccCcccccccCC
Confidence 3556999999998 99999999999998765 8999999999998888888865542 455555 4
Q ss_pred cccCCCCCCeEEEccCCCCcEEEEeC-CCCCCCeEeEEEeecceeccCCceEEcCCCcccc
Q psy10678 75 DILISLDDRYLYTSNWMHGDIRQYDI-RDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDV 134 (136)
Q Consensus 75 D~l~s~drr~L~vp~l~sgrIyv~Dv-sDP~~PkL~~~v~~gg~~~~~~~vkvie~~el~~ 134 (136)
| .+++|||||+|||+||||||+|| +||++|+| +||||++||++
T Consensus 82 ~--~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l---------------~KvIe~~ev~~ 125 (461)
T PF05694_consen 82 D--PSKERRYLILPGLRSSRIYVIDTKTDPRKPRL---------------HKVIEPEEVFE 125 (461)
T ss_dssp ---TT--S-EEEEEBTTT--EEEEE--S-TTS-EE---------------EEEE-HHHHHH
T ss_pred C--CcccCCcEEeeeeccCcEEEEECCCCCCCCce---------------EeeeCHHHHHh
Confidence 3 56899999999999999999999 79999999 99999999874
No 2
>KOG0918|consensus
Probab=99.97 E-value=2.9e-32 Score=238.48 Aligned_cols=58 Identities=62% Similarity=1.071 Sum_probs=56.2
Q ss_pred CCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecceeccCCceEEcCCCccccc
Q psy10678 78 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELDVS 135 (136)
Q Consensus 78 ~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~~~~~~~vkvie~~el~~~ 135 (136)
+|+||||||++||+||+|+||||+||.+|+|+|||||||+++++++|||+|++++++|
T Consensus 319 ISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~ 376 (476)
T KOG0918|consen 319 ISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQ 376 (476)
T ss_pred EeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCC
Confidence 7999999999999999999999999999999999999999999999999999988765
No 3
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=99.91 E-value=4.8e-25 Score=194.47 Aligned_cols=78 Identities=49% Similarity=0.816 Sum_probs=47.5
Q ss_pred EEEEeeCCCCCccc---ccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecceeccCCc
Q psy10678 47 LAVIDVDPQSKTYQ---QVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSG 123 (136)
Q Consensus 47 l~VIdv~p~s~~y~---ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~~~~~~~ 123 (136)
-.||++.+.+.... +++.++.+++++++||++|+|||||||+||++|+|+|||||||++|||+|||||||+++++.+
T Consensus 285 ~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~ 364 (461)
T PF05694_consen 285 EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDH 364 (461)
T ss_dssp EEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--
T ss_pred eEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCC
Confidence 34666665533322 223344445666777778999999999999999999999999999999999999999999844
Q ss_pred e
Q psy10678 124 V 124 (136)
Q Consensus 124 v 124 (136)
.
T Consensus 365 ~ 365 (461)
T PF05694_consen 365 P 365 (461)
T ss_dssp T
T ss_pred c
Confidence 3
No 4
>KOG0918|consensus
Probab=99.55 E-value=6.2e-15 Score=130.06 Aligned_cols=113 Identities=29% Similarity=0.453 Sum_probs=99.2
Q ss_pred CCCCCCCccCCCCCCCCCHHHHHhcCCCCc---------------eeEEEEecCCCCCCCeEEEEeeCCCCCccccc--c
Q psy10678 1 MTPNPTSCCSGKGPGYRTPVDAMRYGPRET---------------LLYVICIQPNGQHPDYLAVIDVDPQSKTYQQV--R 63 (136)
Q Consensus 1 ~~~~~~~~~~~~~~~y~sp~~Am~~ap~Ek---------------~dYvatldvd~~spdyl~VIdv~p~s~~y~ev--~ 63 (136)
|......||+.. ++|+||.+||+ .|+|+ +||++|||+||+||+||+|||+.+++..+||+ +
T Consensus 3 ~~~~~~~~~~~g-p~~~tP~~a~~-gpre~l~~~~~~~~~~g~~~~d~latVdvdp~s~t~c~vI~r~~~~~~gdelhhs 80 (476)
T KOG0918|consen 3 MNGISGDCCKSG-PGYATPLAAMS-GPREKLIYVVAVYTGTGYEKPDYLATVDVDPSSPTYCQVIHRLPMPYLGDELHHS 80 (476)
T ss_pred ccccccchhccC-CCcCCchHhhh-CccceeEEEeccccCCCCcCCcceeEEecCCCCCcceeeEEEeccCcccchhccc
Confidence 344556666444 99999999998 88865 78889999999999999999999999999999 6
Q ss_pred cccccCCCccccccCCCCCCeEEEccCCCCcEEEEeC-CCCCCCeEeEEEeecceeccCCceEEcCCCccc
Q psy10678 64 NTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDI-RDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELD 133 (136)
Q Consensus 64 ~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~Dv-sDP~~PkL~~~v~~gg~~~~~~~vkvie~~el~ 133 (136)
||| +|++|++| .+.+||+|++|++.|+||||||+ ++|++|.| +|+|+++.|.
T Consensus 81 gwn-~~ssc~~~--~~~~R~~LVlp~l~S~riyvid~~~ep~~~~l---------------~k~i~~~il~ 133 (476)
T KOG0918|consen 81 GWN-SCSSCHGD--SSFKRRYLVLPSLNSGRIYVIDVKTEPRKPSL---------------EKTIDPDILE 133 (476)
T ss_pred chh-hhhhhccC--cchhhhheeecccccCceEEEEeccCcCccce---------------eeeechhhHh
Confidence 688 79999999 68899999999999999999999 89999999 7777775554
No 5
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=97.70 E-value=7.9e-05 Score=46.78 Aligned_cols=33 Identities=30% Similarity=0.591 Sum_probs=28.2
Q ss_pred CCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEE
Q psy10678 79 SLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQI 112 (136)
Q Consensus 79 s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v 112 (136)
....+|+|+..+..| +.++|||||.+|++++++
T Consensus 8 ~v~g~yaYva~~~~G-l~IvDISnPs~P~~v~~~ 40 (42)
T PF08309_consen 8 AVSGNYAYVADGNNG-LVIVDISNPSNPVLVGSY 40 (42)
T ss_pred EEECCEEEEEeCCCC-EEEEECCCCCCCEEEEEe
Confidence 456889999977654 899999999999998886
No 6
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=96.19 E-value=0.016 Score=33.76 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=28.5
Q ss_pred CCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecc
Q psy10678 80 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 116 (136)
Q Consensus 80 ~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg 116 (136)
++.++||+.++.++.|.++|. ..-++.++|.+|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~---~~~~~~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDT---ATNKVIATIPVGG 34 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEEC---CCCeEEEEEECCC
Confidence 367899999999999999988 3457888898864
No 7
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=94.73 E-value=0.078 Score=45.58 Aligned_cols=65 Identities=31% Similarity=0.423 Sum_probs=43.5
Q ss_pred CeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeeccee
Q psy10678 45 DYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKI 118 (136)
Q Consensus 45 dyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~~ 118 (136)
..++|||..-. ++++.++..-..++....+.|.||||+.+ ++|.|.+||+.. -+++++|.+|+..
T Consensus 16 ~~v~viD~~t~-----~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~---~~~v~~i~~G~~~ 80 (369)
T PF02239_consen 16 GSVAVIDGATN-----KVVARIPTGGAPHAGLKFSPDGRYLYVAN-RDGTVSVIDLAT---GKVVATIKVGGNP 80 (369)
T ss_dssp TEEEEEETTT------SEEEEEE-STTEEEEEE-TT-SSEEEEEE-TTSEEEEEETTS---SSEEEEEE-SSEE
T ss_pred CEEEEEECCCC-----eEEEEEcCCCCceeEEEecCCCCEEEEEc-CCCeEEEEECCc---ccEEEEEecCCCc
Confidence 46788886653 66666643233355444788999999998 689999999832 2489999998754
No 8
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.34 E-value=0.32 Score=42.34 Aligned_cols=82 Identities=17% Similarity=0.240 Sum_probs=57.5
Q ss_pred CCCCceeEEEEecCC----CCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCC-eEEEccCCCCcEEEEeC
Q psy10678 26 GPRETLLYVICIQPN----GQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDR-YLYTSNWMHGDIRQYDI 100 (136)
Q Consensus 26 ap~Ek~dYvatldvd----~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr-~L~vp~l~sgrIyv~Dv 100 (136)
.+..+..||++.... ...-+.++|||..- .+++..+...-... -+..|+|.+ .||+.+..++.|.+||+
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-----~kvi~~i~vG~~~~-~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-----GKRLRKIELGHEID-SINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCC-----CeEEEEEeCCCcee-eEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 577888999987554 23347999999755 36666553111111 123688999 99999999999999997
Q ss_pred CCCCCCeEeEEE-eecc
Q psy10678 101 RDTAHPVLVGQI-FLGG 116 (136)
Q Consensus 101 sDP~~PkL~~~v-~~gg 116 (136)
..-|++++| .+|+
T Consensus 330 ---~t~k~i~~i~~vg~ 343 (352)
T TIGR02658 330 ---ETGKELSSVNQLGR 343 (352)
T ss_pred ---cCCeEEeeeccCCC
Confidence 444778888 6664
No 9
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=94.29 E-value=0.071 Score=45.82 Aligned_cols=91 Identities=25% Similarity=0.316 Sum_probs=55.3
Q ss_pred CCCCCCHHHHHhcCCCCceeEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCC
Q psy10678 13 GPGYRTPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMH 92 (136)
Q Consensus 13 ~~~y~sp~~Am~~ap~Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~s 92 (136)
+++++.+....- +|-.+.+||+. -| -.+.+||.... +++....++...+| +-.|.|.||||+.|+..
T Consensus 33 ~~~~~~h~~~~~-s~Dgr~~yv~~--rd----g~vsviD~~~~-----~~v~~i~~G~~~~~-i~~s~DG~~~~v~n~~~ 99 (369)
T PF02239_consen 33 PTGGAPHAGLKF-SPDGRYLYVAN--RD----GTVSVIDLATG-----KVVATIKVGGNPRG-IAVSPDGKYVYVANYEP 99 (369)
T ss_dssp E-STTEEEEEE--TT-SSEEEEEE--TT----SEEEEEETTSS-----SEEEEEE-SSEEEE-EEE--TTTEEEEEEEET
T ss_pred cCCCCceeEEEe-cCCCCEEEEEc--CC----CeEEEEECCcc-----cEEEEEecCCCcce-EEEcCCCCEEEEEecCC
Confidence 344443333333 67788899974 22 37999998875 56555533333333 33688999999999999
Q ss_pred CcEEEEeCCCCCCCeEeEEEeecceec
Q psy10678 93 GDIRQYDIRDTAHPVLVGQIFLGGKIQ 119 (136)
Q Consensus 93 grIyv~DvsDP~~PkL~~~v~~gg~~~ 119 (136)
+.+.++|... =+++++|..+|.-.
T Consensus 100 ~~v~v~D~~t---le~v~~I~~~~~~~ 123 (369)
T PF02239_consen 100 GTVSVIDAET---LEPVKTIPTGGMPV 123 (369)
T ss_dssp TEEEEEETTT-----EEEEEE--EE-T
T ss_pred CceeEecccc---ccceeecccccccc
Confidence 9999999833 25678888877654
No 10
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.74 E-value=0.4 Score=38.82 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=55.4
Q ss_pred CCCCceeEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeCC-CCC
Q psy10678 26 GPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIR-DTA 104 (136)
Q Consensus 26 ap~Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~Dvs-DP~ 104 (136)
.|.++..|++. ...+-+.|++++..... -++++... .-....++.++++.++||+.+..++.|.+|++. +-.
T Consensus 236 ~pdg~~lyv~~-----~~~~~I~v~~i~~~~~~-~~~~~~~~-~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g 308 (330)
T PRK11028 236 TPDGRHLYACD-----RTASLISVFSVSEDGSV-LSFEGHQP-TETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETG 308 (330)
T ss_pred CCCCCEEEEec-----CCCCeEEEEEEeCCCCe-EEEeEEEe-ccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCC
Confidence 57788888862 33457889998765321 12333331 112334555788999999999999999999984 334
Q ss_pred CCeEeEEEeecc
Q psy10678 105 HPVLVGQIFLGG 116 (136)
Q Consensus 105 ~PkL~~~v~~gg 116 (136)
+.+.++++.+|+
T Consensus 309 ~l~~~~~~~~g~ 320 (330)
T PRK11028 309 LLTELGRYAVGQ 320 (330)
T ss_pred cEEEccccccCC
Confidence 567777776654
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.53 E-value=0.76 Score=37.20 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=54.2
Q ss_pred CHHHHHhcCCCCceeEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCCC-----cc-ccccCCCCCCeEEEccCC
Q psy10678 18 TPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLA-----MV-TDILISLDDRYLYTSNWM 91 (136)
Q Consensus 18 sp~~Am~~ap~Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~-----~~-gD~l~s~drr~L~vp~l~ 91 (136)
.|+...- .|..+..|++.- .-+-+.++++++...+. +++......+. .. -++.++++.||||+.+..
T Consensus 176 ~p~~~~~-~pdg~~lyv~~~-----~~~~v~v~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~ 248 (330)
T PRK11028 176 GPRHMVF-HPNQQYAYCVNE-----LNSSVDVWQLKDPHGEI-ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT 248 (330)
T ss_pred CCceEEE-CCCCCEEEEEec-----CCCEEEEEEEeCCCCCE-EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC
Confidence 3443333 566777777642 13556666666432222 22222211111 01 134467899999999999
Q ss_pred CCcEEEEeC-CCCCCCeEeEEEeec
Q psy10678 92 HGDIRQYDI-RDTAHPVLVGQIFLG 115 (136)
Q Consensus 92 sgrIyv~Dv-sDP~~PkL~~~v~~g 115 (136)
++.|.+||+ ++-..-++.+.+..|
T Consensus 249 ~~~I~v~~i~~~~~~~~~~~~~~~~ 273 (330)
T PRK11028 249 ASLISVFSVSEDGSVLSFEGHQPTE 273 (330)
T ss_pred CCeEEEEEEeCCCCeEEEeEEEecc
Confidence 999999999 565566788888765
No 12
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=92.66 E-value=0.38 Score=43.71 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=43.6
Q ss_pred eeEEEEec-CCCCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCc-----------EEEE
Q psy10678 31 LLYVICIQ-PNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGD-----------IRQY 98 (136)
Q Consensus 31 ~dYvatld-vd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgr-----------Iyv~ 98 (136)
-+|++|+- +|| |=|||+..- .-=+|+|.+. -|.+.+-|--.++.+|+-=|..... |=.|
T Consensus 337 ~~Y~VTFrqvDP-----LfviDLsdP--~~P~vlGeLK--IPGfS~YLHP~~e~~LlGiG~~~~~~~~~~~~~GlKisLF 407 (521)
T PF09826_consen 337 RAYLVTFRQVDP-----LFVIDLSDP--ANPKVLGELK--IPGFSDYLHPYDENHLLGIGKDTDEDEGTGWTQGLKISLF 407 (521)
T ss_pred eEEEEEEeecCc-----eEEEECCCC--CCCceeeEEE--CccchhceeECCCCeEEEEcccCcccccccccceeEEEEE
Confidence 47888762 232 444554321 1114445442 2333333222245555544443333 6789
Q ss_pred eCCCCCCCeEeEEEeecce
Q psy10678 99 DIRDTAHPVLVGQIFLGGK 117 (136)
Q Consensus 99 DvsDP~~PkL~~~v~~gg~ 117 (136)
|||||.+|+...++.||+.
T Consensus 408 DVSD~~~P~e~~~~~iG~~ 426 (521)
T PF09826_consen 408 DVSDPANPKELDKEVIGDR 426 (521)
T ss_pred ecCCCCCccEeEEEEcCCC
Confidence 9999999999999999653
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.57 E-value=1 Score=37.60 Aligned_cols=79 Identities=30% Similarity=0.455 Sum_probs=51.7
Q ss_pred CCCCceeEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeC-CCCC
Q psy10678 26 GPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDI-RDTA 104 (136)
Q Consensus 26 ap~Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~Dv-sDP~ 104 (136)
.|..++.||..-. .+-++++++++...+-.. +.+....-...-++.++++.+|||+.+-.|++|.+|++ .+--
T Consensus 253 spdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~-~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 253 SPDGRFLYVSNRG-----SNSISVFDLDPATGTLTL-VQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp -TTSSEEEEEECT-----TTEEEEEEECTTTTTEEE-EEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred ecCCCEEEEEecc-----CCEEEEEEEecCCCceEE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 6888888887654 788999999876433222 44442111223455578899999999999999999998 3433
Q ss_pred CCeEeE
Q psy10678 105 HPVLVG 110 (136)
Q Consensus 105 ~PkL~~ 110 (136)
.-+.++
T Consensus 327 ~l~~~~ 332 (345)
T PF10282_consen 327 KLTPVG 332 (345)
T ss_dssp EEEEEE
T ss_pred cEEEec
Confidence 334333
No 14
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=92.56 E-value=0.94 Score=39.49 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=62.3
Q ss_pred HHHHHhcCCCCceeEEEEecC----CCCCCCeEEEEeeCCCCCccccccccccc--CCCccccccCCCCCCeEEEccCC-
Q psy10678 19 PVDAMRYGPRETLLYVICIQP----NGQHPDYLAVIDVDPQSKTYQQVRNTLRA--GLAMVTDILISLDDRYLYTSNWM- 91 (136)
Q Consensus 19 p~~Am~~ap~Ek~dYvatldv----d~~spdyl~VIdv~p~s~~y~ev~~~~~a--~~~~~gD~l~s~drr~L~vp~l~- 91 (136)
|+- +. +|-.+..|++.-.- =+++-|+++|||..-......-.++--+. ..+.....-+|.|.|+||+.++-
T Consensus 49 P~~-~~-spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p 126 (352)
T TIGR02658 49 PNP-VV-ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP 126 (352)
T ss_pred Cce-eE-CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC
Confidence 444 34 78888999998843 24667999999998863332222221100 01111223378899999999999
Q ss_pred CCcEEEEeC-CCCCCCeEeEEEeecc
Q psy10678 92 HGDIRQYDI-RDTAHPVLVGQIFLGG 116 (136)
Q Consensus 92 sgrIyv~Dv-sDP~~PkL~~~v~~gg 116 (136)
...|-++|+ +. |++++|-++|
T Consensus 127 ~~~V~VvD~~~~----kvv~ei~vp~ 148 (352)
T TIGR02658 127 SPAVGVVDLEGK----AFVRMMDVPD 148 (352)
T ss_pred CCEEEEEECCCC----cEEEEEeCCC
Confidence 999999999 34 7889998877
No 15
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.14 E-value=0.24 Score=43.74 Aligned_cols=45 Identities=27% Similarity=0.654 Sum_probs=36.3
Q ss_pred CCccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecce
Q psy10678 70 LAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK 117 (136)
Q Consensus 70 ~~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~ 117 (136)
..++-| ....+.|.|+..|-+| ++++|+|+|.+|++.++..+.|.
T Consensus 86 ~~l~~D--v~vse~yvyvad~ssG-L~IvDIS~P~sP~~~~~lnt~gy 130 (370)
T COG5276 86 RDLFAD--VRVSEEYVYVADWSSG-LRIVDISTPDSPTLIGFLNTDGY 130 (370)
T ss_pred hhhhhe--eEecccEEEEEcCCCc-eEEEeccCCCCcceeccccCCce
Confidence 345556 3557999999998666 89999999999999998887543
No 16
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.90 E-value=0.85 Score=40.35 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=48.9
Q ss_pred CceeEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCCCcc-ccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCe
Q psy10678 29 ETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMV-TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPV 107 (136)
Q Consensus 29 Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~-gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~Pk 107 (136)
.+.+||+-+ -+-+-+||+-.-+ --+|.++. +.++.- -|. .-.-+|-|+.+|.- -+-++|+|||..|+
T Consensus 138 Gn~aYVadl------ddgfLivdvsdps--sP~lagry-a~~~~d~~~v--~ISGn~AYvA~~d~-GL~ivDVSnp~sPv 205 (370)
T COG5276 138 GNYAYVADL------DDGFLIVDVSDPS--SPQLAGRY-ALPGGDTHDV--AISGNYAYVAWRDG-GLTIVDVSNPHSPV 205 (370)
T ss_pred CCEEEEeec------cCcEEEEECCCCC--Cceeeeee-ccCCCCceeE--EEecCeEEEEEeCC-CeEEEEccCCCCCe
Confidence 345666655 3556677764322 12566666 233321 132 33567778876654 47899999999999
Q ss_pred EeEEEeecce
Q psy10678 108 LVGQIFLGGK 117 (136)
Q Consensus 108 L~~~v~~gg~ 117 (136)
|.+....||.
T Consensus 206 li~~~n~g~g 215 (370)
T COG5276 206 LIGSYNTGPG 215 (370)
T ss_pred EEEEEecCCc
Confidence 9999999953
No 17
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=91.19 E-value=0.95 Score=39.94 Aligned_cols=84 Identities=30% Similarity=0.378 Sum_probs=63.1
Q ss_pred CCCceeEEEE-----ecC---CC--CCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEE
Q psy10678 27 PRETLLYVIC-----IQP---NG--QHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIR 96 (136)
Q Consensus 27 p~Ek~dYvat-----ldv---d~--~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIy 96 (136)
|..|++|+++ |+| ++ ..=+=+|+|+..|.-.++. .|. .++.++.+-||||+++=.++-|.
T Consensus 200 pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~---~~~-------aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 200 PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT---NWA-------AAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC---Cce-------eEEEECCCCCEEEEecCCCCeEE
Confidence 6689999974 444 44 3445678888888753221 233 56778999999999999999999
Q ss_pred EEeC-CCCCCCeEeEEEeecceecc
Q psy10678 97 QYDI-RDTAHPVLVGQIFLGGKIQS 120 (136)
Q Consensus 97 v~Dv-sDP~~PkL~~~v~~gg~~~~ 120 (136)
+|-| .+-.+=.++++...+|..-|
T Consensus 270 ~f~V~~~~g~L~~~~~~~teg~~PR 294 (346)
T COG2706 270 VFSVDPDGGKLELVGITPTEGQFPR 294 (346)
T ss_pred EEEEcCCCCEEEEEEEeccCCcCCc
Confidence 9999 56677888999999998433
No 18
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.22 E-value=0.67 Score=38.63 Aligned_cols=45 Identities=38% Similarity=0.548 Sum_probs=38.5
Q ss_pred ccccCCCCCCeEEEccCCCCcEEEEeC-CCCCCCeEeEEEeeccee
Q psy10678 74 TDILISLDDRYLYTSNWMHGDIRQYDI-RDTAHPVLVGQIFLGGKI 118 (136)
Q Consensus 74 gD~l~s~drr~L~vp~l~sgrIyv~Dv-sDP~~PkL~~~v~~gg~~ 118 (136)
.++.+++|.||||+++-.++.|-+|++ .+-.+.++++.+..||..
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~ 293 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF 293 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC
Confidence 456689999999999999999999999 555789999999998874
No 19
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=88.90 E-value=0.54 Score=42.70 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=27.6
Q ss_pred CCCcEEEEeCCCCCCCeEeEEEeecceeccC
Q psy10678 91 MHGDIRQYDIRDTAHPVLVGQIFLGGKIQSD 121 (136)
Q Consensus 91 ~sgrIyv~DvsDP~~PkL~~~v~~gg~~~~~ 121 (136)
..-+|++|||+||.+|++.+++.+-|.+...
T Consensus 96 ~~t~i~vYDIsD~~~P~~~~~~~~~G~yvsS 126 (521)
T PF09826_consen 96 SSTKITVYDISDPSNPKLLREIEIEGSYVSS 126 (521)
T ss_pred ceeEEEEEECCCCCCceEEEEEEeeeEEEeE
Confidence 3668999999999999999999999988664
No 20
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=86.60 E-value=7.1 Score=29.48 Aligned_cols=63 Identities=24% Similarity=0.323 Sum_probs=39.2
Q ss_pred CeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecc
Q psy10678 45 DYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 116 (136)
Q Consensus 45 dyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg 116 (136)
+-++++|+... +++.... .......+..+++.++||+.+=.++.|.+||+.. -+.+++|.+|+
T Consensus 229 ~~i~v~d~~~~-----~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~---~~~~~~~~~~~ 291 (300)
T TIGR03866 229 NRVAVVDAKTY-----EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA---LKVIKSIKVGR 291 (300)
T ss_pred CeEEEEECCCC-----cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC---CcEEEEEEccc
Confidence 35777876532 3322110 1112233446778889999887899999999843 45667777654
No 21
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=82.56 E-value=1.5 Score=31.22 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=22.6
Q ss_pred ccCCCCCCeEEEccCCCCcEEEEeC
Q psy10678 76 ILISLDDRYLYTSNWMHGDIRQYDI 100 (136)
Q Consensus 76 ~l~s~drr~L~vp~l~sgrIyv~Dv 100 (136)
|..++++++|||+......|++|..
T Consensus 59 I~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 59 IAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred EEEcCCCCEEEEEeccCCeEEEEEe
Confidence 4468899999999999999999987
No 22
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=67.38 E-value=5.4 Score=37.12 Aligned_cols=26 Identities=15% Similarity=0.374 Sum_probs=22.6
Q ss_pred CCcEEEEeCCCCCCCeEeEEEeecce
Q psy10678 92 HGDIRQYDIRDTAHPVLVGQIFLGGK 117 (136)
Q Consensus 92 sgrIyv~DvsDP~~PkL~~~v~~gg~ 117 (136)
.+-.+++|++||.+||+.|-..|-|.
T Consensus 448 tDPlfviDlsNPenPkvlGeLKIPGf 473 (603)
T COG4880 448 TDPLFVIDLSNPENPKVLGELKIPGF 473 (603)
T ss_pred cCceEEEEcCCCCCCceeEEEecCCc
Confidence 45578999999999999999999874
No 23
>PRK02888 nitrous-oxide reductase; Validated
Probab=67.11 E-value=17 Score=34.53 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=43.4
Q ss_pred eEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeCCCCC---------CCeEeEEEeec
Q psy10678 46 YLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA---------HPVLVGQIFLG 115 (136)
Q Consensus 46 yl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~---------~PkL~~~v~~g 115 (136)
-..|||....+....+++..++..-+-+|= -.|+|-+|||+.|.+|..+-|||++.-. +=.++++|.+|
T Consensus 297 ~V~VID~~t~~~~~~~v~~yIPVGKsPHGV-~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 297 KVPVVDGRKAANAGSALTRYVPVPKNPHGV-NTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred EEEEEECCccccCCcceEEEEECCCCccce-EECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 366777665222233554444322222331 2689999999999999999999993211 12478888874
No 24
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=59.74 E-value=9.7 Score=33.77 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=22.2
Q ss_pred CCCCCCeEEEccCCCCcEEEEeCC
Q psy10678 78 ISLDDRYLYTSNWMHGDIRQYDIR 101 (136)
Q Consensus 78 ~s~drr~L~vp~l~sgrIyv~Dvs 101 (136)
.+++-|||+++.|..+||++||.+
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~ 175 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLD 175 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcc
Confidence 577899999999999999999995
No 25
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=53.16 E-value=44 Score=27.69 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=37.8
Q ss_pred CCCeEEEEeeCCCCCccccccc--ccccCCCccccccCCCCCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeecc
Q psy10678 43 HPDYLAVIDVDPQSKTYQQVRN--TLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 116 (136)
Q Consensus 43 spdyl~VIdv~p~s~~y~ev~~--~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg 116 (136)
-|+|-++|+..+.+..-++++| |+ ++++.||+=.=..+.|+.+|.+ =++..+|.++|
T Consensus 5 ~~~y~~~i~~~~l~g~~~e~SGLTy~-------------pd~~tLfaV~d~~~~i~els~~----G~vlr~i~l~g 63 (248)
T PF06977_consen 5 LPDYRVVIEAKPLPGILDELSGLTYN-------------PDTGTLFAVQDEPGEIYELSLD----GKVLRRIPLDG 63 (248)
T ss_dssp -TT-EEEEEEEE-TT--S-EEEEEEE-------------TTTTEEEEEETTTTEEEEEETT------EEEEEE-SS
T ss_pred cCCcEEEEeeeECCCccCCccccEEc-------------CCCCeEEEEECCCCEEEEEcCC----CCEEEEEeCCC
Confidence 3788899998787777777755 33 4677888888888999999863 25778899988
No 26
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=44.65 E-value=1.3e+02 Score=22.52 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCCCCCeEEEccCCCCcEEEEeCCC
Q psy10678 78 ISLDDRYLYTSNWMHGDIRQYDIRD 102 (136)
Q Consensus 78 ~s~drr~L~vp~l~sgrIyv~DvsD 102 (136)
.+.+.++||+.+...+.|++||++.
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCC
Confidence 5678889999998889999999953
No 27
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=41.76 E-value=48 Score=25.70 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=22.3
Q ss_pred CCCCCCeEEEccCCCCcEEEEeCC
Q psy10678 78 ISLDDRYLYTSNWMHGDIRQYDIR 101 (136)
Q Consensus 78 ~s~drr~L~vp~l~sgrIyv~Dvs 101 (136)
.+++.+.||+..-..++|+.||..
T Consensus 141 ~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 141 FSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EETTSSEEEEEETTTTEEEEEEEE
T ss_pred ECCcchheeecccccceeEEEecc
Confidence 678999999999999999999994
No 28
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=41.44 E-value=39 Score=19.52 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=17.1
Q ss_pred CCCCCeEEEccCCCCcEEEEeCC
Q psy10678 79 SLDDRYLYTSNWMHGDIRQYDIR 101 (136)
Q Consensus 79 s~drr~L~vp~l~sgrIyv~Dvs 101 (136)
...+..||+.+. .|++|.+|..
T Consensus 18 ~v~~g~vyv~~~-dg~l~ald~~ 39 (40)
T PF13570_consen 18 AVAGGRVYVGTG-DGNLYALDAA 39 (40)
T ss_dssp EECTSEEEEE-T-TSEEEEEETT
T ss_pred EEECCEEEEEcC-CCEEEEEeCC
Confidence 346778999987 9999999974
No 29
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=39.28 E-value=44 Score=26.45 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=13.8
Q ss_pred eEEEEeeCCCCCccccccc
Q psy10678 46 YLAVIDVDPQSKTYQQVRN 64 (136)
Q Consensus 46 yl~VIdv~p~s~~y~ev~~ 64 (136)
+..+||..+.|+||++...
T Consensus 79 ~dV~VDlR~~SpTfG~~~~ 97 (176)
T TIGR01221 79 FDVAVDLRRNSPTFGKWVG 97 (176)
T ss_pred EEEEEECCCCcCCCCeEEE
Confidence 4567888888888887644
No 30
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=37.22 E-value=51 Score=18.02 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=13.4
Q ss_pred CCCCCCeEEEccCCCCcEEEEe
Q psy10678 78 ISLDDRYLYTSNWMHGDIRQYD 99 (136)
Q Consensus 78 ~s~drr~L~vp~l~sgrIyv~D 99 (136)
.+++.++|+..+ ..+.|++||
T Consensus 19 ~~~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 19 WSPDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp EETTSSEEEEEE-TTSEEEEEE
T ss_pred EecccccceeeC-CCCEEEEEC
Confidence 445555555444 778888887
No 31
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=36.27 E-value=41 Score=26.52 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=28.6
Q ss_pred CeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEcc--------CCCCcEEEEeCCCCCCCeEe
Q psy10678 45 DYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSN--------WMHGDIRQYDIRDTAHPVLV 109 (136)
Q Consensus 45 dyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~--------l~sgrIyv~DvsDP~~PkL~ 109 (136)
=+-++||..+.|+||++...-.. ++ .+++.||+|. |-..-+.+|-++++.+|.--
T Consensus 78 i~dV~vDlR~~SpTfg~~~~~~L------s~----~n~~~l~IP~G~aHGf~~l~d~a~v~Y~~t~~y~p~~e 140 (176)
T PF00908_consen 78 IFDVAVDLRKGSPTFGKWVSVEL------SA----ENPRQLYIPPGVAHGFQTLEDDAEVLYKVTNYYDPEDE 140 (176)
T ss_dssp EEEEEEE-BTTSTTTT-EEEEEE------ET----TT--EEEE-TTEEEEEEESSSEEEEEEEESS---GGGE
T ss_pred EEEEEEECCCCCCCCCEEEEEEe------Cc----cccCEEEeCCcceeeEEeccCceEEEEecCCccCcccc
Confidence 35568888899999988755331 11 2566777763 33334567766777777653
No 32
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=35.37 E-value=35 Score=24.18 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=18.4
Q ss_pred CCCCCCeEEEEeeCCCCCcccccccccc
Q psy10678 40 NGQHPDYLAVIDVDPQSKTYQQVRNTLR 67 (136)
Q Consensus 40 d~~spdyl~VIdv~p~s~~y~ev~~~~~ 67 (136)
||+.|+..||.|+|. -++.|.+
T Consensus 42 ~P~~~tlFQVadVDt------G~I~wVn 63 (75)
T PF11302_consen 42 DPKVPTLFQVADVDT------GVIRWVN 63 (75)
T ss_pred CCCCCceEEEEEccC------CeEEEEE
Confidence 799999999999997 4677775
No 33
>PHA02095 hypothetical protein
Probab=34.59 E-value=31 Score=24.75 Aligned_cols=38 Identities=18% Similarity=0.486 Sum_probs=29.3
Q ss_pred ceeEEEEecCCCCCC--CeEEEEeeC-CCCCcccccccccc
Q psy10678 30 TLLYVICIQPNGQHP--DYLAVIDVD-PQSKTYQQVRNTLR 67 (136)
Q Consensus 30 k~dYvatldvd~~sp--dyl~VIdv~-p~s~~y~ev~~~~~ 67 (136)
+.|=+.|+.-|.++| ||--||++. .++..|.+|+.|..
T Consensus 39 rvdgilciegd~~~pm~~f~~ii~vp~~~~~dyn~ii~wa~ 79 (84)
T PHA02095 39 RVDGILCIEGDKEHPMPDFEHIVEVPDEMAGDYNEIISWAE 79 (84)
T ss_pred eccEEEEecCCCCCCchhheeeeeCchhhcccHHHHHHHHH
Confidence 456677776666664 999999985 47889999999974
No 34
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=34.36 E-value=2.1e+02 Score=24.42 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=48.0
Q ss_pred CCCCceeEEEEecCCCCCCCeEEEEeeCCCCCcccccccccccCCCccccccCCCCCCeEEEccC--CCCcEEEEeC-CC
Q psy10678 26 GPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNW--MHGDIRQYDI-RD 102 (136)
Q Consensus 26 ap~Ek~dYvatldvd~~spdyl~VIdv~p~s~~y~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l--~sgrIyv~Dv-sD 102 (136)
.+..+..|+.+.+ -+-..|||..- ..+.+... .-...-.+..+.+..++|+.+- .++.|.++|. ++
T Consensus 82 ~~~~~~vyv~~~~-----~~~v~vid~~~-----~~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 82 NPAGNKVYVTTGD-----SNTVSVIDTAT-----NTVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred CCCCCeEEEecCC-----CCeEEEEcCcc-----cceeeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 4566668888777 45566777222 22222221 1112233336788999999999 5899999987 45
Q ss_pred CCCCeEeEEEeecc
Q psy10678 103 TAHPVLVGQIFLGG 116 (136)
Q Consensus 103 P~~PkL~~~v~~gg 116 (136)
++...+++|.
T Consensus 151 ----~~~~~~~vG~ 160 (381)
T COG3391 151 ----KVTATIPVGN 160 (381)
T ss_pred ----eEEEEEecCC
Confidence 6666788875
No 35
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=32.73 E-value=54 Score=18.12 Aligned_cols=23 Identities=17% Similarity=0.331 Sum_probs=19.8
Q ss_pred CCCCCCeEEEccCCCCcEEEEeC
Q psy10678 78 ISLDDRYLYTSNWMHGDIRQYDI 100 (136)
Q Consensus 78 ~s~drr~L~vp~l~sgrIyv~Dv 100 (136)
....+++||...+....|++.+.
T Consensus 16 ~d~~~~~lYw~D~~~~~I~~~~~ 38 (43)
T smart00135 16 VDWIEGRLYWTDWGLDVIEVANL 38 (43)
T ss_pred EeecCCEEEEEeCCCCEEEEEeC
Confidence 45678899999999999999987
No 36
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=32.35 E-value=1.3e+02 Score=26.76 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=46.1
Q ss_pred HHHhcCCCCceeEEEEecC-C------CCCCCeEEEEeeCCCCCccccc-ccccccCCCccccccCCCCCCeEEEccCCC
Q psy10678 21 DAMRYGPRETLLYVICIQP-N------GQHPDYLAVIDVDPQSKTYQQV-RNTLRAGLAMVTDILISLDDRYLYTSNWMH 92 (136)
Q Consensus 21 ~Am~~ap~Ek~dYvatldv-d------~~spdyl~VIdv~p~s~~y~ev-~~~~~a~~~~~gD~l~s~drr~L~vp~l~s 92 (136)
+||. . .++.||.++.. | ...-+--.|||+... |+ ...+ + |+. + +---+..||+.++..
T Consensus 157 lA~~-~--g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~-----evl~~GL-s-mPh-S---PRWhdgrLwvldsgt 222 (335)
T TIGR03032 157 MALD-D--GEPRYVTALSQSDVADGWREGRRDGGCVIDIPSG-----EVVASGL-S-MPH-S---PRWYQGKLWLLNSGR 222 (335)
T ss_pred eeee-C--CeEEEEEEeeccCCcccccccccCCeEEEEeCCC-----CEEEcCc-c-CCc-C---CcEeCCeEEEEECCC
Confidence 6787 2 56899999865 2 356678889999875 55 3344 1 221 0 112477899999999
Q ss_pred CcEEEEeC
Q psy10678 93 GDIRQYDI 100 (136)
Q Consensus 93 grIyv~Dv 100 (136)
|+|+.+|-
T Consensus 223 Gev~~vD~ 230 (335)
T TIGR03032 223 GELGYVDP 230 (335)
T ss_pred CEEEEEcC
Confidence 99999986
No 37
>PF09112 N-glycanase_N: Peptide-N-glycosidase F, N terminal; InterPro: IPR015196 This domain adopts an eight-stranded antiparallel beta jelly roll configuration, with the beta strands arranged into two sheets. It is similar in topology to many viral capsid proteins, as well as lectins and several glucanases. This domain allows the protein to bind sugars and catalyses the complete removal of N-linked oligosaccharide chains from glycoproteins []. ; PDB: 3PMS_A 3KS7_D 1PNF_A 1PNG_A 1PGS_A.
Probab=30.19 E-value=17 Score=29.50 Aligned_cols=37 Identities=27% Similarity=0.502 Sum_probs=25.6
Q ss_pred CCCeEEEccCCCCcEEEEeCCCCCCCeEeEEEeeccee
Q psy10678 81 DDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKI 118 (136)
Q Consensus 81 drr~L~vp~l~sgrIyv~DvsDP~~PkL~~~v~~gg~~ 118 (136)
..+-++.+.|..+.-|..|||| ..|.|.|.+++|=.+
T Consensus 125 ~~~~v~~~~W~~~v~w~qDIT~-L~plL~ge~~igi~i 161 (177)
T PF09112_consen 125 NYNPVYGPKWEDSVPWRQDITD-LYPLLKGEVYIGIFI 161 (177)
T ss_dssp TCC-TT-----STCEEEEE-GG-GTTTSSEEEEEEEEE
T ss_pred ccccccccCccccceeEEEchH-hHHhhCCCeEEEEEE
Confidence 3568999999999999999988 889999999998444
No 38
>COG0257 RpmJ Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]
Probab=27.75 E-value=45 Score=20.93 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=12.4
Q ss_pred CCCcEEEEeCCCCCC
Q psy10678 91 MHGDIRQYDIRDTAH 105 (136)
Q Consensus 91 ~sgrIyv~DvsDP~~ 105 (136)
+.|+|||+-.+||++
T Consensus 19 RkGrv~VIck~~prh 33 (38)
T COG0257 19 RKGRVYVICKKNPKH 33 (38)
T ss_pred ecCEEEEEeCCCcch
Confidence 569999998888874
No 39
>PRK00465 rpmJ 50S ribosomal protein L36; Reviewed
Probab=27.38 E-value=43 Score=20.76 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=11.2
Q ss_pred CCCcEEEEeCCCCCC
Q psy10678 91 MHGDIRQYDIRDTAH 105 (136)
Q Consensus 91 ~sgrIyv~DvsDP~~ 105 (136)
+.|++||+- +||++
T Consensus 19 R~gr~~Vic-~nprh 32 (37)
T PRK00465 19 RKGVVRVIC-ENPKH 32 (37)
T ss_pred ECCEEEEEc-CCCCc
Confidence 468999998 78874
No 40
>KOG0315|consensus
Probab=26.33 E-value=50 Score=28.88 Aligned_cols=29 Identities=31% Similarity=0.563 Sum_probs=22.7
Q ss_pred CCCCCCeEEEccCCCCcEEEEeC-CCCCCCeE
Q psy10678 78 ISLDDRYLYTSNWMHGDIRQYDI-RDTAHPVL 108 (136)
Q Consensus 78 ~s~drr~L~vp~l~sgrIyv~Dv-sDP~~PkL 108 (136)
+++++++|-+.|+-+ |+.||+ |+--+|+.
T Consensus 48 iTpdk~~LAaa~~qh--vRlyD~~S~np~Pv~ 77 (311)
T KOG0315|consen 48 ITPDKKDLAAAGNQH--VRLYDLNSNNPNPVA 77 (311)
T ss_pred EcCCcchhhhccCCe--eEEEEccCCCCCcee
Confidence 678999999999876 777888 54445876
No 41
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=25.55 E-value=1.5e+02 Score=26.30 Aligned_cols=90 Identities=20% Similarity=0.254 Sum_probs=62.9
Q ss_pred CCCCceeEEEEecCC----CCCCCeEEEEeeCCCCCccccccc---ccccCCCccccccCCCCCCeEEEccCC-CCcEEE
Q psy10678 26 GPRETLLYVICIQPN----GQHPDYLAVIDVDPQSKTYQQVRN---TLRAGLAMVTDILISLDDRYLYTSNWM-HGDIRQ 97 (136)
Q Consensus 26 ap~Ek~dYvatldvd----~~spdyl~VIdv~p~s~~y~ev~~---~~~a~~~~~gD~l~s~drr~L~vp~l~-sgrIyv 97 (136)
+|..+..|++.-.-. +++-|++.+.|..-.+++++-++= +.. +.+..+..-.|.|.|||||-|+- +.-|-|
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~-~~~~~~~~~ls~dgk~~~V~N~TPa~SVtV 122 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ-VVPYKNMFALSADGKFLYVQNFTPATSVTV 122 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B---BS--GGGEEE-TTSSEEEEEEESSSEEEEE
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe-ecccccceEEccCCcEEEEEccCCCCeEEE
Confidence 578888998876552 688899999999998888766532 542 34455555577899999998875 456889
Q ss_pred EeCCCCCCCeEeEEEeecceec
Q psy10678 98 YDIRDTAHPVLVGQIFLGGKIQ 119 (136)
Q Consensus 98 ~DvsDP~~PkL~~~v~~gg~~~ 119 (136)
+|+.. =|.++.|-+-|..+
T Consensus 123 VDl~~---~kvv~ei~~PGC~~ 141 (342)
T PF06433_consen 123 VDLAA---KKVVGEIDTPGCWL 141 (342)
T ss_dssp EETTT---TEEEEEEEGTSEEE
T ss_pred EECCC---CceeeeecCCCEEE
Confidence 99832 27788888887654
No 42
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=24.25 E-value=56 Score=27.28 Aligned_cols=22 Identities=36% Similarity=0.754 Sum_probs=18.9
Q ss_pred CCCCCCeEEEEeeCCCCCccccc
Q psy10678 40 NGQHPDYLAVIDVDPQSKTYQQV 62 (136)
Q Consensus 40 d~~spdyl~VIdv~p~s~~y~ev 62 (136)
+++.||++ |+|.||....+.++
T Consensus 96 ~~e~PD~~-vfDLDP~~~~f~~v 117 (228)
T cd04864 96 DLEHPDLM-VFDLDPSADDIEAV 117 (228)
T ss_pred CCCCCCEE-EEecCCCCCCHHHH
Confidence 57899998 99999997777777
No 43
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=23.12 E-value=94 Score=22.09 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=17.6
Q ss_pred CCeEEEccCCCCcEEEEeCCCCCCCeE
Q psy10678 82 DRYLYTSNWMHGDIRQYDIRDTAHPVL 108 (136)
Q Consensus 82 rr~L~vp~l~sgrIyv~DvsDP~~PkL 108 (136)
|+.|.=| .||+-|++|+ |++|++
T Consensus 8 rKvL~DP--~SG~Yy~vd~--P~Qp~~ 30 (75)
T PF15232_consen 8 RKVLQDP--ESGQYYVVDA--PVQPKT 30 (75)
T ss_pred ccEeecC--CCCCEEEEec--CCCcce
Confidence 4554433 5999999999 888887
No 44
>KOG2315|consensus
Probab=22.62 E-value=2.9e+02 Score=26.30 Aligned_cols=25 Identities=12% Similarity=0.453 Sum_probs=21.4
Q ss_pred CCCCCCeEEEccC--CCCcEEEEeCCC
Q psy10678 78 ISLDDRYLYTSNW--MHGDIRQYDIRD 102 (136)
Q Consensus 78 ~s~drr~L~vp~l--~sgrIyv~DvsD 102 (136)
.++.-++|.+.|+ +.|.|=+||+.|
T Consensus 319 fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred ECCCCCEEEEeecCCCCCceEEEeccc
Confidence 6778889998877 579999999977
No 45
>KOG2110|consensus
Probab=22.12 E-value=65 Score=29.15 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=17.1
Q ss_pred CCCCCCeEEEccCCCCcEEEEeCCC
Q psy10678 78 ISLDDRYLYTSNWMHGDIRQYDIRD 102 (136)
Q Consensus 78 ~s~drr~L~vp~l~sgrIyv~DvsD 102 (136)
.-+.|++|+|. |..+ |||||++|
T Consensus 93 VrmNr~RLvV~-Lee~-IyIydI~~ 115 (391)
T KOG2110|consen 93 VRMNRKRLVVC-LEES-IYIYDIKD 115 (391)
T ss_pred EEEccceEEEE-Eccc-EEEEeccc
Confidence 35689999884 3333 99999976
No 46
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.90 E-value=41 Score=30.23 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=16.0
Q ss_pred CCCCCCeEEEccCCCCcEE
Q psy10678 78 ISLDDRYLYTSNWMHGDIR 96 (136)
Q Consensus 78 ~s~drr~L~vp~l~sgrIy 96 (136)
.-.+||++|+++|++..+-
T Consensus 244 ~R~~rR~~yL~g~~~e~l~ 262 (396)
T COG3864 244 TRKDRRQPYLRGKLSEHLI 262 (396)
T ss_pred cccccccccccccchhhhh
Confidence 3568999999999998764
No 47
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.79 E-value=3.7e+02 Score=23.42 Aligned_cols=65 Identities=26% Similarity=0.265 Sum_probs=40.8
Q ss_pred CeEEEEeeCCCCCcccccccccccCCC--ccccccCCCCCCeEEEc----cCCCCcEEEEeCCCCCCCeEeEEEeecc
Q psy10678 45 DYLAVIDVDPQSKTYQQVRNTLRAGLA--MVTDILISLDDRYLYTS----NWMHGDIRQYDIRDTAHPVLVGQIFLGG 116 (136)
Q Consensus 45 dyl~VIdv~p~s~~y~ev~~~~~a~~~--~~gD~l~s~drr~L~vp----~l~sgrIyv~DvsDP~~PkL~~~v~~gg 116 (136)
+|+.|+|..- +++..|..+... ++|--.+|.|-|+||.. .=..|.|-|||.. +.-+.++...-+|
T Consensus 28 ~~~~v~D~~~-----g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~--~~~~ri~E~~s~G 98 (305)
T PF07433_consen 28 TFALVFDCRT-----GQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA--RGYRRIGEFPSHG 98 (305)
T ss_pred cEEEEEEcCC-----CceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc--CCcEEEeEecCCC
Confidence 6777777754 355555532111 22444479999999998 4457899999997 2334455555544
No 48
>PF13964 Kelch_6: Kelch motif
Probab=21.44 E-value=1.1e+02 Score=18.21 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=14.1
Q ss_pred CCCeEEEccCCC-----CcEEEEeC
Q psy10678 81 DDRYLYTSNWMH-----GDIRQYDI 100 (136)
Q Consensus 81 drr~L~vp~l~s-----grIyv~Dv 100 (136)
+.+..++.|+.. +++++||.
T Consensus 11 ~~~iyv~GG~~~~~~~~~~v~~yd~ 35 (50)
T PF13964_consen 11 GGKIYVFGGYDNSGKYSNDVERYDP 35 (50)
T ss_pred CCEEEEECCCCCCCCccccEEEEcC
Confidence 455556666655 78999988
No 49
>KOG2055|consensus
Probab=21.27 E-value=1.5e+02 Score=27.85 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=27.0
Q ss_pred cccccccccCCCccccccCCCCCCeEEEccCCCCcEEEEeC
Q psy10678 60 QQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDI 100 (136)
Q Consensus 60 ~ev~~~~~a~~~~~gD~l~s~drr~L~vp~l~sgrIyv~Dv 100 (136)
.|+++.. +..+.+.|+.++-+-+.||++| ..|.||+||+
T Consensus 335 ~eli~s~-KieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl 373 (514)
T KOG2055|consen 335 KELITSF-KIEGVVSDFTFSSDSKELLASG-GTGEVYVWNL 373 (514)
T ss_pred hhhhhee-eeccEEeeEEEecCCcEEEEEc-CCceEEEEec
Confidence 3445544 3455566766777778888877 5669999999
No 50
>PF03736 EPTP: EPTP domain; InterPro: IPR005492 Mutations in the LGI/EPT gene can result in a special form of epilepsy, autosomal dominant lateral temporal epilepsy. The Epitempin protein (also known as Leucine-rich glioma-inactivated protein) was seen to contain a 130 amino acid repeat in its C-terminal section, although a sub-domain of 50 amino acids has now been further defined within this. The architecture and structural features of this repeat make it a likely member 7-bladed beta-propeller fold []. This protein has now been found in a number of proteins associated with neurological disorders suggesting that it may play a role in the development of epilepsy and other related conditions [].
Probab=20.95 E-value=80 Score=19.04 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=13.6
Q ss_pred CCCeEEEccCCC-CcEEEEe
Q psy10678 81 DDRYLYTSNWMH-GDIRQYD 99 (136)
Q Consensus 81 drr~L~vp~l~s-grIyv~D 99 (136)
++-||++.+... +.||.||
T Consensus 24 ~~~fl~~a~~~~~s~Iy~Wd 43 (44)
T PF03736_consen 24 GDQFLAVASFFGDSQIYRWD 43 (44)
T ss_pred CEEEEEEEeCCCCCEEEEeC
Confidence 577888876654 4788886
No 51
>KOG1645|consensus
Probab=20.80 E-value=86 Score=28.94 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=22.8
Q ss_pred CCCCeEEEccCCCCcEEEEeCCCCCCCeE
Q psy10678 80 LDDRYLYTSNWMHGDIRQYDIRDTAHPVL 108 (136)
Q Consensus 80 ~drr~L~vp~l~sgrIyv~DvsDP~~PkL 108 (136)
+|.+..+-.|+..|-||+||...|..|..
T Consensus 245 lde~h~IYaGl~nG~VlvyD~R~~~~~~~ 273 (463)
T KOG1645|consen 245 LDERHVIYAGLQNGMVLVYDMRQPEGPLM 273 (463)
T ss_pred cCCcceeEEeccCceEEEEEccCCCchHh
Confidence 34455555789999999999998888864
No 52
>KOG0266|consensus
Probab=20.68 E-value=2.8e+02 Score=24.32 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=20.0
Q ss_pred CCCCCCeEEEccCCCCcEEEEeC
Q psy10678 78 ISLDDRYLYTSNWMHGDIRQYDI 100 (136)
Q Consensus 78 ~s~drr~L~vp~l~sgrIyv~Dv 100 (136)
.+.++++|+..+. .+.|++||+
T Consensus 296 f~~d~~~l~s~s~-d~~i~vwd~ 317 (456)
T KOG0266|consen 296 FSPDGNLLVSASY-DGTIRVWDL 317 (456)
T ss_pred ECCCCCEEEEcCC-CccEEEEEC
Confidence 6779999999987 999999999
No 53
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=20.65 E-value=1.1e+02 Score=24.58 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=15.2
Q ss_pred eEEEEeeCCCCCccccccccc
Q psy10678 46 YLAVIDVDPQSKTYQQVRNTL 66 (136)
Q Consensus 46 yl~VIdv~p~s~~y~ev~~~~ 66 (136)
+-+.+|....|+||++..+-.
T Consensus 79 ~dv~vDlR~~SpTyg~~~~~~ 99 (173)
T COG1898 79 FDVAVDLRKDSPTYGKWVGVV 99 (173)
T ss_pred EEEEEEccCCCCCcceEEEEE
Confidence 556788888888888775543
No 54
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=20.56 E-value=1.1e+02 Score=23.78 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=22.5
Q ss_pred cccCCCCCCeEEEccCC--CCcEEEEeCC
Q psy10678 75 DILISLDDRYLYTSNWM--HGDIRQYDIR 101 (136)
Q Consensus 75 D~l~s~drr~L~vp~l~--sgrIyv~Dvs 101 (136)
.+.-|++-+||.+.++. .|.|.+||+.
T Consensus 105 ~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 105 TISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred EEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 34578999999999876 5799999995
No 55
>PRK00831 rpmJ 50S ribosomal protein L36; Validated
Probab=20.34 E-value=79 Score=20.04 Aligned_cols=15 Identities=7% Similarity=0.195 Sum_probs=12.1
Q ss_pred CCCcEEEEeCCCCCC
Q psy10678 91 MHGDIRQYDIRDTAH 105 (136)
Q Consensus 91 ~sgrIyv~DvsDP~~ 105 (136)
+.|+|||+--+||++
T Consensus 22 R~grv~Vick~nprh 36 (41)
T PRK00831 22 RKGRVYVINKKNPRF 36 (41)
T ss_pred eCCEEEEEcCCCCcc
Confidence 569999997778874
No 56
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=20.20 E-value=1.3e+02 Score=17.92 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=13.6
Q ss_pred CCCCeEEEccC-------CCCcEEEEeC
Q psy10678 80 LDDRYLYTSNW-------MHGDIRQYDI 100 (136)
Q Consensus 80 ~drr~L~vp~l-------~sgrIyv~Dv 100 (136)
.+++.+++.|. .++++++||+
T Consensus 10 ~~~kiyv~GG~~~~~~~~~~~~v~~~d~ 37 (49)
T PF07646_consen 10 LDGKIYVFGGYGTDNGGSSSNDVWVFDT 37 (49)
T ss_pred ECCEEEEECCcccCCCCcccceeEEEEC
Confidence 35555666555 4567888887
Done!