RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10678
(136 letters)
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller,
structural genomics, unknown function; 2.00A {Sulfolobus
tokodaii}
Length = 462
Score = 76.8 bits (188), Expect = 1e-17
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 34 VICIQPNGQHPDYLAVIDVDPQSKTY--QQVRNTLRAGLAMVTDILISLDDRYLYTSNWM 91
+ + VI++ + ++ +A +VTDI ISLDD++LY S W
Sbjct: 282 IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG 341
Query: 92 HGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGV 124
G++RQYDI + PVL G++ LGG
Sbjct: 342 IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHP 374
Score = 67.1 bits (163), Expect = 3e-14
Identities = 29/143 (20%), Positives = 58/143 (40%), Gaps = 28/143 (19%)
Query: 1 MTPNPTSCCSGKGPGYRTPVDAMRYGPRETLLYVICIQPNG--QHPDYLAVIDVDPQSKT 58
+PT Y +P AM+ P E L YV C+ D++AV+DV+P+S+T
Sbjct: 6 FKRDPT--------FYPSPKMAMK-APPEDLAYVACLYTGTGINRADFIAVVDVNPKSET 56
Query: 59 YQQVRNTLR---------------AGLAMVTDILISLDDRYLYTSNWMHGDIRQYDI-RD 102
Y ++ + + A+ + +++ R+L I D +
Sbjct: 57 YSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPN 116
Query: 103 TAHPVLVGQIFLGGKIQSDSGVT 125
P ++ ++ +++ SG +
Sbjct: 117 PREPKII-KVIEPEEVKKVSGYS 138
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118,
structural genomics, PSI-2, protein structure
initiative; 1.96A {Lactobacillus plantarum}
Length = 347
Score = 37.8 bits (88), Expect = 4e-04
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 23 MRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQ--QVRNTLRAGLAMVT---DIL 77
+ + P ++ + + Q +A + D Q+ + + T+ A I
Sbjct: 192 LVFSPDGQYAFLAG-ELSSQ----IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246
Query: 78 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK 117
+S D +LY SN + + + + H L+ QI G
Sbjct: 247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD 286
Score = 32.4 bits (74), Expect = 0.034
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 7/91 (7%)
Query: 27 PRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLY 86
++ L V G +A +D Q+ NT+ A + + + +Y
Sbjct: 49 AKDCLYSVDKEDDEGG----IAAWQIDGQTAH---KLNTVVAPGTPPAYVAVDEARQLVY 101
Query: 87 TSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK 117
++N+ G I L + G
Sbjct: 102 SANYHKGTAEVMKIAADGALTLTDTVQHSGH 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 35.5 bits (82), Expect = 0.003
Identities = 7/71 (9%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 45 DYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA 104
+ + +D + + + G +I + D + + +N + I + ++
Sbjct: 151 NTVRRFKIDADGVLFDTGQEFISGG-TRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209
Query: 105 HPVLVGQIFLG 115
+ L+ +
Sbjct: 210 NITLLNAVGTN 220
Score = 30.5 bits (69), Expect = 0.14
Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 45 DYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTA 104
L I+ + V +M D+ I+ DD++ T ++
Sbjct: 62 QTLVQIETQLEPPK---VVAIQEGQSSM-ADVDITPDDQFAVTVTGLNHPFNMQSY-SFL 116
Query: 105 HPVLVGQIFLG 115
+ I +
Sbjct: 117 KNKFISTIPIP 127
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed
beta-propeller, structural genomics, joint center F
structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides
fragilis} PDB: 3fgb_A
Length = 361
Score = 34.0 bits (78), Expect = 0.009
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 7/95 (7%)
Query: 23 MRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDD 82
+ + Y+I + G + Q DI +S D
Sbjct: 216 LIFNSDGKFAYLIN-EIGGT----VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG 270
Query: 83 RYLYTSNWMHGD-IRQYDI-RDTAHPVLVGQIFLG 115
+YLY SN + D + + + VG G
Sbjct: 271 KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTG 305
Score = 29.8 bits (67), Expect = 0.25
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 11/109 (10%)
Query: 5 PTSCCSGKGPGYRTPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRN 64
P S P Y + +Y + Q ++ D + T + N
Sbjct: 43 PLSDAEVANPSY------LIPSADGKFVYSVNEFSKDQA--AVSAFAFDKEKGTLHLL-N 93
Query: 65 TLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIF 113
T + A + + + + + T+N+ G I + I + +
Sbjct: 94 TQKTMGADPCYL--TTNGKNIVTANYSGGSITVFPIGQDGALLPASDVI 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.00A {Escherichia coli} SCOP:
b.69.11.1
Length = 343
Score = 32.7 bits (75), Expect = 0.025
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 10/100 (10%)
Query: 23 MRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQ--QVRNTLRAGLAMVT---DIL 77
M + P E Y + + + V ++ + Q + + + DI
Sbjct: 183 MVFHPNEQYAYCVN-----ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH 237
Query: 78 ISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGK 117
I+ D R+LY + I + + + +
Sbjct: 238 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET 277
Score = 26.6 bits (59), Expect = 2.9
Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 7/76 (9%)
Query: 27 PRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLY 86
P + LYV + + P ++ T I ++++
Sbjct: 47 PDKRYLYVGVRPEFR-----VLAYRIAPDDGALTFA-AESALPGSL-THISTDHQGQFVF 99
Query: 87 TSNWMHGDIRQYDIRD 102
++ G++ + D
Sbjct: 100 VGSYNAGNVSVTRLED 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 31.0 bits (70), Expect = 0.088
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 13/97 (13%)
Query: 20 VDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILIS 79
P L+V + + + V D+ KT + T+ +L
Sbjct: 171 FVETISIPEHNELWV-----SQMQANAVHVFDL----KTLA-YKATVDLTGKWSKILLYD 220
Query: 80 LDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 116
+Y SNW+ DI + D + + + G
Sbjct: 221 PIRDLVYCSNWISEDI---SVIDRKTKLEIRKTDKIG 254
Score = 30.6 bits (69), Expect = 0.13
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 23 MRYGPRETLLYVICIQPNGQHP--DYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISL 80
+ LY+ + Q L + +D + ++ +T+ I+
Sbjct: 259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE-----KLIDTIGPP-GNKRHIVSGN 312
Query: 81 DDRYLYTSNWMHGDIRQYDIR 101
+ +Y S+ I YD++
Sbjct: 313 TENKIYVSDMCCSKIEVYDLK 333
Score = 30.3 bits (68), Expect = 0.15
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 15/91 (16%)
Query: 21 DAMRYGPRETLLYVICIQPN---------GQHPDYLAVIDVDPQSKTYQQVRNTLRAGLA 71
+ + P LYV C PN G + VID T V+ AG
Sbjct: 348 NTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT----TTDT-VKEFWEAG-N 401
Query: 72 MVTDILISLDDRYLYTSNWMHGDIRQYDIRD 102
T + +S D+RYL S+++ IR Y
Sbjct: 402 QPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 30.1 bits (68), Expect = 0.18
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 9/81 (11%)
Query: 22 AMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLD 81
+ P T YV ++ + +++ID T + + G I ++ D
Sbjct: 204 GIAVNPEGTKAYVTN---VDKYFNTVSMIDT----GTNKITA-RIPVG-PDPAGIAVTPD 254
Query: 82 DRYLYTSNWMHGDIRQYDIRD 102
+ +Y + + D
Sbjct: 255 GKKVYVALSFXNTVSVIDTAT 275
Score = 26.3 bits (58), Expect = 4.4
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 30/122 (24%)
Query: 23 MRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDD 82
+ P +YV L+VID T V T++ G + +S D
Sbjct: 79 VAVSPDGKQVYV-----TNMASSTLSVIDT-----TSNTVAGTVKTG-KSPLGLALSPDG 127
Query: 83 RYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQS----------------DSGVTV 126
+ LY +N + +T ++ + +G + ++V
Sbjct: 128 KKLYVTNNGDKTVSVI---NTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184
Query: 127 ID 128
ID
Sbjct: 185 ID 186
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 28.6 bits (64), Expect = 0.63
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 23 MRYGPRETLLYVICIQPNG-QHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLD 81
M Y +E L++ Q + +D T + + + L I+
Sbjct: 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPV----TLEVTQ-AIHNDLK-PFGATINNT 99
Query: 82 DRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 116
+ L+ N ++ + D + + G++ L
Sbjct: 100 TQTLWFGNTVNSAVTAIDAKTGE---VKGRLVLDD 131
Score = 27.8 bits (62), Expect = 1.2
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 22 AMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLD 81
A+ + P YV + ++VID K+Y+ V T + +S D
Sbjct: 276 AVLFNPARNEAYVTH-----RQAGKVSVIDA----KSYK-VVKTFDTP-THPNSLALSAD 324
Query: 82 DRYLYTSNWMHGDIRQYDIRD 102
+ LY S +Q +
Sbjct: 325 GKTLYVSVKQKSTKQQEATQP 345
Score = 25.5 bits (56), Expect = 7.8
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 13/104 (12%)
Query: 27 PRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLY 86
+Y+ I + V+D + G M T + + + + LY
Sbjct: 150 DATNTVYISGIGKESV----IWVVDG----GNIKLKTAIQNTG-KMSTGLALDSEGKRLY 200
Query: 87 TSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDP 130
T+N G++ D D ++ + L + + + D
Sbjct: 201 TTNA-DGELITIDTADNK---ILSRKKLLDDGKEHFFINISLDT 240
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer,
seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora
crassa} SCOP: b.69.10.1
Length = 365
Score = 28.7 bits (64), Expect = 0.65
Identities = 9/81 (11%), Positives = 24/81 (29%), Gaps = 19/81 (23%)
Query: 23 MRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTL--------------RA 68
+ P LY + + + + +DP + ++
Sbjct: 198 VAMHPTGNYLYALM-----EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGK 252
Query: 69 GLAMVTDILISLDDRYLYTSN 89
GL ++ +Y++ S+
Sbjct: 253 GLYRADVCALTFSGKYMFASS 273
Score = 27.6 bits (61), Expect = 1.6
Identities = 8/73 (10%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 44 PDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDT 103
P + + D + T + ++ T ++ + + + +Y + + ++
Sbjct: 13 PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM--KKWSSFAVKSP 70
Query: 104 AHPVLVGQIFLGG 116
V +GG
Sbjct: 71 TEIVHEASHPIGG 83
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
1v04_A* 3srg_A*
Length = 355
Score = 28.6 bits (63), Expect = 0.66
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 76 ILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 116
I IS D +Y+Y + + I Y+ + +
Sbjct: 226 INISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDT 266
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 27.4 bits (60), Expect = 1.5
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 51 DVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVG 110
DVD SK ++R I I+ DD + ++ GD+ DI
Sbjct: 131 DVDKTSKNVLKLRKR-FCFSKRPNAISIAEDDTTVIIADKF-GDVYSIDINSIPEEKFTQ 188
Query: 111 QIFLG 115
+ LG
Sbjct: 189 EPILG 193
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 2.3
Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 33/110 (30%)
Query: 25 YGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDD-- 82
+G E +L V P Q++ L T+ + D+
Sbjct: 13 HGSLEHVLLV----PTASFF-------------IASQLQEQFNKILPEPTEGFAADDEPT 55
Query: 83 -------RYL-YTSNWMH-GDIRQYDIRDTAHPVLVG--QIFLGGK-IQS 120
++L Y S+ + + Q+D + L +L G I +
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFD--QVLNLCLTEFENCYLEGNDIHA 103
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Length = 361
Score = 26.3 bits (58), Expect = 3.3
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 14/86 (16%)
Query: 49 VIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVL 108
+D DPQ N + L +Y + + T + +
Sbjct: 35 YVDCDPQC-------N-ATQLM------LTEEQTESIYLDGLNDEVAERNSLAKTVYAIF 80
Query: 109 VGQIFLGGKIQSDSGVTVIDDPELDV 134
V +I ++ + +DV
Sbjct: 81 VPLREGESQIAAEITPMRSERFGVDV 106
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel,
hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Length = 678
Score = 26.4 bits (59), Expect = 3.8
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 90 WMHGDIRQYDIRDTAHPVLVGQIFL 114
W + + Y ++D A ++GQ +L
Sbjct: 391 W-NKSVSLYTVKDKATGEVLGQFYL 414
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan,
TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter
pylori}
Length = 326
Score = 25.6 bits (56), Expect = 5.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 84 YLYTSNWMHGDIRQYDIRD 102
+ Y + MH D Y +R
Sbjct: 176 FKYDHSLMHNDFTPYYVRV 194
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Length = 674
Score = 25.7 bits (57), Expect = 6.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 90 WMHGDIRQYDIRDTAHPVLVGQIFL 114
W H D+R Y RD A +VG+ +L
Sbjct: 375 W-HEDVRLYTARDAASGEVVGKFYL 398
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 6.4
Identities = 11/102 (10%), Positives = 33/102 (32%), Gaps = 10/102 (9%)
Query: 35 ICIQPNG-QHPDYLAVIDVDPQSKTYQQ-VRNTLRAGLAMVTDIL------ISLD-DRYL 85
I + + L + Q + Q+ V LR + + S+ Y+
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 86 YTSNWMHGDIRQYDIRDTAHPVLVGQIFLG-GKIQSDSGVTV 126
+ ++ D + + + + ++ +++ V +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Score = 25.6 bits (55), Expect = 7.4
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 75 DILISLDDRYLYTSNWMH-GDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDDPELD 133
D++ D+Y Y+ H +I + V + FL KI+ DS L+
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 134 V 134
Sbjct: 523 T 523
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 25.5 bits (55), Expect = 7.4
Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 15/114 (13%)
Query: 19 PVDAMRYGPRETLLYVICIQPNGQHPDY-----LAVIDVDPQSKTYQQVRNTLRAGLAMV 73
+ L + P + Y LA D+ K + ++
Sbjct: 244 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL----KQRKLIKAANLDH--TY 297
Query: 74 TDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVI 127
+ LY D+ + + V I L G S + V
Sbjct: 298 YCVAFDKKGDKLYLGGTF-NDLAVF---NPDTLEKVKNIKLPGGDMSTTTPQVF 347
>1yn3_A EAP2, truncated cell surface protein MAP-W; virulence-factor,
toxin, extracellular-adherence protein, protein binding;
1.35A {Staphylococcus aureus}
Length = 98
Score = 24.4 bits (52), Expect = 8.1
Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 37 IQPNGQHPDYLAVIDVDPQSKT-YQQVRNTLRAGLAM---VTDILISLDDRYLYTSNWMH 92
I NG + L+ + + Y+ + +++ L +TD+ + L + YT N+ +
Sbjct: 8 ITVNGTSQNILSNLTFNKNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKN 67
Query: 93 GDIRQYDIRDTAHP 106
G + D++ +
Sbjct: 68 GTKKVIDLKSGIYT 81
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 25.1 bits (54), Expect = 8.9
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 63 RNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPV--LVGQIFLGGKIQS 120
R+ ++ ++D+ S RY+ T ++ ++ +D+ PV +L K+ S
Sbjct: 278 RSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335
Query: 121 DSGVTVIDDP 130
I D
Sbjct: 336 LYENDCIFDK 345
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA
repair, DNA-binding; HET: DNA DOC DCP; 1.92A
{Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A*
3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Length = 786
Score = 25.1 bits (55), Expect = 9.5
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 57 KTYQQVRNTLRAGLAMVTDIL---ISLDDRYLY-----TSNWMHGDIRQYDIRD 102
+ ++Q+ N + + + +RYL + W+ GD+ I +
Sbjct: 87 RAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVN 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.429
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,268,370
Number of extensions: 129792
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 45
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)