RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10678
(136 letters)
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing
enzyme {Neurospora crassa [TaxId: 5141]}
Length = 365
Score = 35.2 bits (80), Expect = 0.001
Identities = 12/115 (10%), Positives = 28/115 (24%), Gaps = 3/115 (2%)
Query: 1 MTPNPTSCCSGKGPGYRTPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSK-TY 59
+ P + D ++ + Y+A +
Sbjct: 238 LIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK 297
Query: 60 QQVRNTLRAGLAMVTDILIS-LDDRYLYTSNWMHGDIRQYDIRD-TAHPVLVGQI 112
Q + + D ++ ++ G + Y +D H V +I
Sbjct: 298 QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRI 352
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 32.1 bits (72), Expect = 0.016
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 32 LYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWM 91
L+ + ++ GQ +A+ID TY+ L G A V +S RYL+
Sbjct: 33 LFSVTLRDAGQ----IALIDGS----TYEIKT-VLDTGYA-VHISRLSASGRYLFVIGR- 81
Query: 92 HGDIRQYDIRDTAHPVLVGQIFLGG 116
G + D+ P V +I +G
Sbjct: 82 DGKVNMIDL-WMKEPTTVAEIKIGS 105
Score = 27.1 bits (59), Expect = 0.74
Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 6/80 (7%)
Query: 20 VDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILIS 79
V R L+VI + +ID+ + T ++ T +
Sbjct: 64 VHISRLSASGRYLFVIG------RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG 117
Query: 80 LDDRYLYTSNWMHGDIRQYD 99
+D+Y + D
Sbjct: 118 WEDKYAIAGAYWPPQYVIMD 137
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 340
Score = 30.1 bits (67), Expect = 0.078
Identities = 9/48 (18%), Positives = 16/48 (33%)
Query: 69 GLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGG 116
G I IS D +Y+Y + + I Y+ + +
Sbjct: 204 GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDT 251
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 29.7 bits (65), Expect = 0.11
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 51 DVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNW 90
++DP + + R TLR LA + + D R L +++
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQ 75
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 29.0 bits (63), Expect = 0.15
Identities = 9/82 (10%), Positives = 20/82 (24%), Gaps = 3/82 (3%)
Query: 36 CIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDI 95
+ + + V V + + +YL + I
Sbjct: 243 HLYACDRTASLITVFSVSEDGSVLSKEGFQ--PTETQPRGFNVDHSGKYLIAAGQKSHHI 300
Query: 96 RQYDI-RDTAHPVLVGQIFLGG 116
Y+I + G+ +G
Sbjct: 301 SVYEIVGEQGLLHEKGRYAVGQ 322
Score = 27.9 bits (60), Expect = 0.44
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 49 VIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDI-RDTAHPV 107
V +++ + + + V +++S D RYLY + Y I D
Sbjct: 18 VWNLNHEGA--LTLTQVVDVP-GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT 74
Query: 108 LVGQIFLGG 116
+ L G
Sbjct: 75 FAAESALPG 83
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 29.1 bits (63), Expect = 0.18
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 45 DYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDI 100
D ++VIDV +V T+ G + +IS D +Y +N D+ D
Sbjct: 12 DNISVIDVTSN-----KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
Score = 27.1 bits (58), Expect = 0.74
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 73 VTDILISLDDRYLYTSNWMHGDIRQYDIRD 102
I ++ D + +Y + + D
Sbjct: 246 PAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 28.2 bits (61), Expect = 0.35
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 41 GQHPDYLAVIDVDPQSKTYQQVRN-TLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYD 99
PD L VID + + T+ +++ R Y + + + D
Sbjct: 7 PARPDKLVVIDT----EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 100 IR 101
+
Sbjct: 63 LV 64
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 28.0 bits (61), Expect = 0.39
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 32 LYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWM 91
L+ + ++ GQ +A++D D +++ + G V +S RYL
Sbjct: 33 LFSVTLRDAGQ----IALVDGD-----SKKIVKVIDTG-YAVHISRMSASGRYLLVIGR- 81
Query: 92 HGDIRQYDIRDTAHPVLVGQI 112
I D P V +I
Sbjct: 82 DARIDMID-LWAKEPTKVAEI 101
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 654
Score = 26.3 bits (57), Expect = 1.5
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 55 QSKTYQQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLVGQIFL 114
K Y V+ L + ++ + L + ++ H D+R Y RD A +VG+ +L
Sbjct: 332 LLKEYFPVQVVTHGLLGIYQEL-LGLAFHHEEGASAWHEDVRLYTARDAASGEVVGKFYL 390
Query: 115 G 115
Sbjct: 391 D 391
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 25.7 bits (55), Expect = 2.4
Identities = 9/112 (8%), Positives = 31/112 (27%), Gaps = 16/112 (14%)
Query: 22 AMRYGPRETLLYVICIQPNGQH---PDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTDILI 78
+ + ++ ++ + + + + Q + G I+
Sbjct: 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA----SVGQTSG-PISNG-HDSDAIIA 321
Query: 79 SLDDR-YLYTSNWMHGDIRQYDIRDTAHPVLVGQIFLGGKIQSDSGVTVIDD 129
+ D Y ++ + YD + L + ++V ++
Sbjct: 322 AQDGASDNYANSAGTEVLDIYDAASDQ---DQSSVELD---KGPESLSVQNE 367
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 301
Score = 25.5 bits (55), Expect = 2.8
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 60 QQVRNTLRAGLAMVTDILISLDDRYLYTSNWMHGDIRQYDIRDTAHPVLV 109
Q+ T L+ + +LY S+ D+ +D TA +
Sbjct: 155 QRPVGWYTGRTGPNTRRLVMEEGGFLYDSDTYDDDLPYWDPASTAEKPHL 204
>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 327
Score = 24.5 bits (52), Expect = 5.1
Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 5/90 (5%)
Query: 16 YRTPVDAMRYGPRETLLYVICIQPNGQHPDYLAVIDVDPQSKTYQQVRNTLRAGLAMVTD 75
P+ A++Y V + + + ++ T+ + +
Sbjct: 226 VMGPIPAIKYDE-SRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLR 284
Query: 76 ILISLDDRYLYTSNWMHGDIRQYDIRDTAH 105
IL + W GD+ D H
Sbjct: 285 IL----EEECVAVPWQRGDVLLIDNWAVLH 310
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 140
Score = 23.5 bits (51), Expect = 8.9
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 52 VDPQSKTYQQVRNTLRAG 69
V Q+ Y+ V LRAG
Sbjct: 9 VYAQAPVYRSVVEELRAG 26
>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein
{Bacteroides fragilis [TaxId: 817]}
Length = 161
Score = 23.5 bits (50), Expect = 9.6
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 34 VICIQPNGQHPDYLAVIDV--DPQSKTYQQVRNTLRAGLAMVTDILISL 80
+ + + DV PQS + N + ++ +L +L
Sbjct: 106 AYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENL 154
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 163
Score = 23.5 bits (50), Expect = 9.7
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 33 YVICIQPNGQHPDYLAVIDV--DPQSKTYQQVRNTLRAGLAMVTDIL 77
+ + H DV P S + Q N L A A++ ++
Sbjct: 113 DYMFMHCLPAHRGEEVTDDVIDSPNSVVWDQAENRLHAQKAVLALVM 159
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.429
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 555,186
Number of extensions: 24160
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 26
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)