Query psy10679
Match_columns 62
No_of_seqs 108 out of 152
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 15:53:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ece_A 462AA long hypothetical 99.9 1.1E-24 3.7E-29 165.6 5.1 49 4-58 414-462 (462)
2 1fgl_B HIV-1 GAG protein; cycl 52.2 4.5 0.00016 20.3 0.7 18 34-54 7-24 (26)
3 3t4l_A Histidine kinase 4; PAS 33.3 20 0.00069 24.4 1.8 17 24-44 247-263 (270)
4 1ym0_B Fibrinotic enzyme compo 32.4 14 0.00046 18.8 0.6 10 43-52 4-13 (27)
5 2vrq_A Alpha-L-arabinofuranosi 30.6 26 0.00089 25.8 2.1 16 40-56 65-80 (496)
6 2vdw_B MRNA-capping enzyme sma 21.3 20 0.00069 26.5 0.0 9 49-57 183-191 (287)
7 2g45_A Ubiquitin carboxyl-term 19.8 29 0.001 22.0 0.6 10 52-61 94-103 (129)
8 3feo_A MBT domain-containing p 19.6 65 0.0022 24.1 2.5 18 43-60 188-206 (437)
9 3ug3_A Alpha-L-arabinofuranosi 18.9 34 0.0012 26.1 0.8 22 9-30 23-44 (504)
10 3vny_A Beta-glucuronidase; TIM 17.8 35 0.0012 25.1 0.6 50 8-59 21-89 (488)
No 1
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.90 E-value=1.1e-24 Score=165.62 Aligned_cols=49 Identities=41% Similarity=0.734 Sum_probs=46.6
Q ss_pred cCceEEEEeccCCCCceEecCcceeeCCCCCCCcceeeeeeeCCCCCCceeeeec
Q psy10679 4 SGSALVKINVNTEQGGLTLDEDFIVDLGLEPNGPALAHEIRYPGGDCTSDIWLVP 58 (62)
Q Consensus 4 ~G~~m~kiDvd~~~GGl~ld~~F~VDFg~~p~Gp~raHeiR~pGGDcsSDiw~~~ 58 (62)
.+++|+++|||+++| |++|++|+||||+ +|||||||||||||||||||+
T Consensus 414 ~~~~~~~~~vd~~~G-L~~~~~f~vdf~~-----~~~h~~r~~ggd~~sd~~~~~ 462 (462)
T 2ece_A 414 LKGWMVKLNANPSGG-LEIDKEFFVDFGE-----ARSHQVRLSGGDASSDSYCYP 462 (462)
T ss_dssp CCCEEEEEEECTTSC-EEEEEEEEEECTT-----SEEEEEEETTCCTTTCCCSCC
T ss_pred CceEEEEEEecCCCC-ceeCCCEEeeccc-----CcceeeecCCCCcCccccccC
Confidence 588999999998888 9999999999988 999999999999999999995
No 2
>1fgl_B HIV-1 GAG protein; cyclophilin, binding protein for cyclosporin A, AIDS, isomer peptide complex; 1.80A {Human immunodeficiency virus type 1}
Probab=52.16 E-value=4.5 Score=20.30 Aligned_cols=18 Identities=44% Similarity=0.746 Sum_probs=14.6
Q ss_pred CCCcceeeeeeeCCCCCCcee
Q psy10679 34 PNGPALAHEIRYPGGDCTSDI 54 (62)
Q Consensus 34 p~Gp~raHeiR~pGGDcsSDi 54 (62)
+-||+-+=|||-|.| |||
T Consensus 7 ~agp~p~gq~R~P~G---sDI 24 (26)
T 1fgl_B 7 HAGPIAPGQLREPRG---SDI 24 (26)
T ss_pred cCCCCCCCCccCCCc---ccc
Confidence 458888889999998 565
No 3
>3t4l_A Histidine kinase 4; PAS domain, hormone receptor, endop reticulum; HET: ZEA; 1.53A {Arabidopsis thaliana} PDB: 3t4k_A* 3t4j_A* 3t4o_A* 3t4q_A* 3t4s_A* 3t4t_A*
Probab=33.25 E-value=20 Score=24.44 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=13.8
Q ss_pred CcceeeCCCCCCCcceeeeee
Q psy10679 24 EDFIVDLGLEPNGPALAHEIR 44 (62)
Q Consensus 24 ~~F~VDFg~~p~Gp~raHeiR 44 (62)
..+-++||+ |+|-|||+
T Consensus 247 ~~~~l~~g~----~~~~~~~~ 263 (270)
T 3t4l_A 247 HESKLDFGD----PFRKHKMI 263 (270)
T ss_dssp EEEEECCSC----TTCCEEEE
T ss_pred EEEEeecCC----chhhhhee
Confidence 357779977 79999996
No 4
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=32.36 E-value=14 Score=18.79 Aligned_cols=10 Identities=50% Similarity=1.345 Sum_probs=8.2
Q ss_pred eeeCCCCCCc
Q psy10679 43 IRYPGGDCTS 52 (62)
Q Consensus 43 iR~pGGDcsS 52 (62)
+-||||-|.-
T Consensus 4 vwypggqcgv 13 (27)
T 1ym0_B 4 VWYPGGQCGV 13 (27)
T ss_dssp CSCTTSCCSC
T ss_pred eeccCCcccc
Confidence 5699999964
No 5
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A
Probab=30.63 E-value=26 Score=25.85 Aligned_cols=16 Identities=38% Similarity=0.899 Sum_probs=11.6
Q ss_pred eeeeeeCCCCCCceeee
Q psy10679 40 AHEIRYPGGDCTSDIWL 56 (62)
Q Consensus 40 aHeiR~pGGDcsSDiw~ 56 (62)
+.-+||||| |-+|.|-
T Consensus 65 ~~~lR~PGG-~~~~~y~ 80 (496)
T 2vrq_A 65 IPVLRWPGG-CFADEYH 80 (496)
T ss_dssp CCEEEESCS-GGGGTCC
T ss_pred CCeEEeCCC-cccccee
Confidence 478999987 5666654
No 6
>2vdw_B MRNA-capping enzyme small subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=21.29 E-value=20 Score=26.52 Aligned_cols=9 Identities=56% Similarity=1.243 Sum_probs=7.1
Q ss_pred CCCceeeee
Q psy10679 49 DCTSDIWLV 57 (62)
Q Consensus 49 DcsSDiw~~ 57 (62)
-|+||||+.
T Consensus 183 K~~sDSWlK 191 (287)
T 2vdw_B 183 KCVSDSWLK 191 (287)
T ss_dssp ECTTSCSSS
T ss_pred eccccchhc
Confidence 489999974
No 7
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=19.84 E-value=29 Score=22.02 Aligned_cols=10 Identities=20% Similarity=0.581 Sum_probs=8.1
Q ss_pred ceeeeecCCC
Q psy10679 52 SDIWLVPNDE 61 (62)
Q Consensus 52 SDiw~~~~~~ 61 (62)
.++|||..|+
T Consensus 94 ~~vwcY~cd~ 103 (129)
T 2g45_A 94 ADVYSYDEDD 103 (129)
T ss_dssp CCEEETTTTE
T ss_pred CeEEECCCCC
Confidence 6899998764
No 8
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=19.64 E-value=65 Score=24.07 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=14.2
Q ss_pred eeeCCC-CCCceeeeecCC
Q psy10679 43 IRYPGG-DCTSDIWLVPND 60 (62)
Q Consensus 43 iR~pGG-DcsSDiw~~~~~ 60 (62)
+||.|. |++.|-||..+.
T Consensus 188 Lry~g~~d~~~dFW~~~~S 206 (437)
T 3feo_A 188 LVYEESEDRTDDFWCHMHS 206 (437)
T ss_dssp EEESSCSSTTCEEEEETTC
T ss_pred EEEeCCCCCCCCeEEeCCC
Confidence 589887 788899997654
No 9
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A
Probab=18.93 E-value=34 Score=26.07 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=15.1
Q ss_pred EEEeccCCCCceEecCcceeeC
Q psy10679 9 VKINVNTEQGGLTLDEDFIVDL 30 (62)
Q Consensus 9 ~kiDvd~~~GGl~ld~~F~VDF 30 (62)
++|-||+....=++|+++|=-|
T Consensus 23 ~~i~v~~~~~~~~i~~~i~G~f 44 (504)
T 3ug3_A 23 YGIVVDPKEVVKPISRHIYGHF 44 (504)
T ss_dssp CEEEEEEEEEEEECCGGGGBEE
T ss_pred eEEEEecCCCcCccCHHHcccc
Confidence 5566666656668999987633
No 10
>3vny_A Beta-glucuronidase; TIM barrel, greek-KEY, glycoside hydrolase family 79, hydrol; 1.50A {Acidobacterium capsulatum} PDB: 3vnz_A* 3vo0_A*
Probab=17.81 E-value=35 Score=25.11 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=30.4
Q ss_pred EEEEeccCCCCceEecCccee---eCCCCCC--C-----c--------cee-eeeeeCCCCCCceeeeecC
Q psy10679 8 LVKINVNTEQGGLTLDEDFIV---DLGLEPN--G-----P--------ALA-HEIRYPGGDCTSDIWLVPN 59 (62)
Q Consensus 8 m~kiDvd~~~GGl~ld~~F~V---DFg~~p~--G-----p--------~ra-HeiR~pGGDcsSDiw~~~~ 59 (62)
=+.|+|++...+=++|++|+= |+..-++ . | +.+ =-+|| |.|.+|.+.|.+
T Consensus 21 ~~~v~v~~~~~~~~v~~~f~g~~~e~s~i~~~~~~~~~~~~v~~l~k~L~~~~~lR~--GG~~~d~~~w~~ 89 (488)
T 3vny_A 21 RVGLSVDASALGHTIPPDYTGLSYEQAQMANPNYFSGANTQLAGFLRTLGRQGVLRI--GGNTSEYTFWNR 89 (488)
T ss_dssp EEEEEEEEEEEEEEECTTCCEEEEEGGGGGCTTTSSTTCHHHHHHHHHHCSSCEEEE--ESGGGGSEEECT
T ss_pred cEEEEEcCCCCCCccCccceEeeeeHhhccCccccCcCCHHHHHHHHHhCCCeEEEe--CccccceEEEcC
Confidence 355666666666677777752 2222121 1 0 112 45899 889999998875
Done!