Query psy10679
Match_columns 62
No_of_seqs 108 out of 152
Neff 2.9
Searched_HMMs 13730
Date Fri Aug 16 15:53:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10679.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10679hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qw9a2 c.1.8.3 (A:18-384) Alp 58.9 1.2 8.8E-05 30.6 0.6 16 40-56 48-63 (367)
2 d1aopa1 d.58.36.1 (A:81-145) S 53.8 0.54 3.9E-05 25.2 -1.6 14 42-55 3-16 (65)
3 d1pb5a_ g.65.1.1 (A:) Neurogen 43.5 1.4 0.00011 22.5 -0.8 13 39-51 23-35 (35)
4 d1k8kg_ a.118.13.1 (G:) Arp2/3 38.9 1.8 0.00013 27.3 -1.1 23 10-38 5-27 (143)
5 d1pg6a_ b.82.5.2 (A:) Hypothet 35.8 11 0.00083 23.7 2.5 39 3-48 150-188 (227)
6 d3c0na1 d.169.1.2 (A:2-84) Pro 29.8 10 0.00073 22.2 1.3 13 49-61 67-79 (83)
7 d1jmxb_ b.69.2.2 (B:) Quinohem 26.2 15 0.0011 20.5 1.7 15 38-52 324-338 (346)
8 d1jbja1 b.1.1.4 (A:101-186) CD 23.6 13 0.00095 21.6 1.0 24 3-26 8-31 (86)
9 d1oz2a1 b.34.9.3 (A:204-313) L 21.9 26 0.0019 19.8 2.2 18 43-60 67-84 (110)
10 d1t9fa_ b.42.6.1 (A:) Hypothet 19.2 65 0.0047 18.9 3.7 28 2-48 7-34 (178)
No 1
>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=58.94 E-value=1.2 Score=30.63 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=11.4
Q ss_pred eeeeeeCCCCCCceeee
Q psy10679 40 AHEIRYPGGDCTSDIWL 56 (62)
Q Consensus 40 aHeiR~pGGDcsSDiw~ 56 (62)
+--+||||| |-||.|-
T Consensus 48 ~~~lR~PGG-~~~~~y~ 63 (367)
T d1qw9a2 48 VPIIRYPGG-NFVSGYN 63 (367)
T ss_dssp CCEEEESCS-GGGGGCC
T ss_pred CCEEeeCCc-cccCccc
Confidence 446899997 6666664
No 2
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=53.78 E-value=0.54 Score=25.17 Aligned_cols=14 Identities=43% Similarity=0.895 Sum_probs=11.7
Q ss_pred eeeeCCCCCCceee
Q psy10679 42 EIRYPGGDCTSDIW 55 (62)
Q Consensus 42 eiR~pGGDcsSDiw 55 (62)
.+|.|||.+|++-|
T Consensus 3 RiriPgG~it~~ql 16 (65)
T d1aopa1 3 RCRLPGGVITTKQW 16 (65)
T ss_dssp ECCCGGGEEEHHHH
T ss_pred EEecCCCCcCHHHH
Confidence 47999999998865
No 3
>d1pb5a_ g.65.1.1 (A:) Neurogenic locus notch homolog protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.46 E-value=1.4 Score=22.47 Aligned_cols=13 Identities=38% Similarity=0.894 Sum_probs=10.3
Q ss_pred eeeeeeeCCCCCC
Q psy10679 39 LAHEIRYPGGDCT 51 (62)
Q Consensus 39 raHeiR~pGGDcs 51 (62)
--|.--|-|||||
T Consensus 23 NnhaCgWDgGDCS 35 (35)
T d1pb5a_ 23 NNHACGWDGGDCS 35 (35)
T ss_dssp CSTTTTGGGGSCC
T ss_pred cccccCCCCCCCC
Confidence 3477778999997
No 4
>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taurus) [TaxId: 9913]}
Probab=38.90 E-value=1.8 Score=27.27 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=15.0
Q ss_pred EEeccCCCCceEecCcceeeCCCCCCCcc
Q psy10679 10 KINVNTEQGGLTLDEDFIVDLGLEPNGPA 38 (62)
Q Consensus 10 kiDvd~~~GGl~ld~~F~VDFg~~p~Gp~ 38 (62)
+|||| .+||+.|+|+-..+.+|.
T Consensus 5 kiDVD------~~de~~f~~~d~~~~~~~ 27 (143)
T d1k8kg_ 5 KVDVD------EYDENKFVDEDDGGDGQA 27 (143)
T ss_dssp TSCGG------GGCTTSCCCCCCC----C
T ss_pred ecccc------cCCCccCCcccccCCCCC
Confidence 47888 689999999866555544
No 5
>d1pg6a_ b.82.5.2 (A:) Hypothetical protein SPyM3_0169 (SPyM18_0222, SPS0176) {Streptococcus pyogenes [TaxId: 1314]}
Probab=35.75 E-value=11 Score=23.69 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=28.2
Q ss_pred ccCceEEEEeccCCCCceEecCcceeeCCCCCCCcceeeeeeeCCC
Q psy10679 3 LSGSALVKINVNTEQGGLTLDEDFIVDLGLEPNGPALAHEIRYPGG 48 (62)
Q Consensus 3 ~~G~~m~kiDvd~~~GGl~ld~~F~VDFg~~p~Gp~raHeiR~pGG 48 (62)
+..|.+++++++ ++-+.+|++.+|=|-. -+-.++|..+|
T Consensus 150 ~~~G~i~~~~~~--~~~~~VD~~~~VA~~~-----~l~~~v~~~~g 188 (227)
T d1pg6a_ 150 NSFGSIKKITLD--GGTMTIDNAHVVAWSR-----ELDYDIHLENG 188 (227)
T ss_dssp ECSBCEEEEEEE--EEEEEEEGGGEEEEET-----TSEEEEECSSC
T ss_pred EcCCcEEEEEcC--CCcEEEeCCeEEEEcC-----CcceEEEEcCC
Confidence 445667888874 3469999999998854 56677777654
No 6
>d3c0na1 d.169.1.2 (A:2-84) Proaerolysin, N-terminal domain {Aeromonas hydrophila [TaxId: 644]}
Probab=29.79 E-value=10 Score=22.20 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=9.6
Q ss_pred CCCceeeeecCCC
Q psy10679 49 DCTSDIWLVPNDE 61 (62)
Q Consensus 49 DcsSDiw~~~~~~ 61 (62)
+-.||-|||++..
T Consensus 67 g~~~~TwCyP~~P 79 (83)
T d3c0na1 67 GTASNTWCYPTNP 79 (83)
T ss_dssp CCCSSEEEEESSC
T ss_pred CCCCCceeccCCC
Confidence 3456899999863
No 7
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=26.21 E-value=15 Score=20.49 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=12.1
Q ss_pred ceeeeeeeCCCCCCc
Q psy10679 38 ALAHEIRYPGGDCTS 52 (62)
Q Consensus 38 ~raHeiR~pGGDcsS 52 (62)
-...+|+.|||++|.
T Consensus 324 ~~i~~i~~p~g~~~~ 338 (346)
T d1jmxb_ 324 EKVKNIKLPGGDMST 338 (346)
T ss_dssp EEEEEEECSSSCCBT
T ss_pred CEEEEEECCCCCcce
Confidence 466789999999874
No 8
>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.55 E-value=13 Score=21.60 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=18.7
Q ss_pred ccCceEEEEeccCCCCceEecCcc
Q psy10679 3 LSGSALVKINVNTEQGGLTLDEDF 26 (62)
Q Consensus 3 ~~G~~m~kiDvd~~~GGl~ld~~F 26 (62)
++|..+|+||.+.++|-+.|.=++
T Consensus 8 ~~~~~~vkvdd~~~dGsV~L~Cn~ 31 (86)
T d1jbja1 8 NKAKNLVQVDGSRGDGSVLLTCGL 31 (86)
T ss_dssp CCCSSCCEECCCSSSCEEEEECSS
T ss_pred hccCccEEecccccCCeEEEEeCC
Confidence 567789999999888888775543
No 9
>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.94 E-value=26 Score=19.78 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=14.7
Q ss_pred eeeCCCCCCceeeeecCC
Q psy10679 43 IRYPGGDCTSDIWLVPND 60 (62)
Q Consensus 43 iR~pGGDcsSDiw~~~~~ 60 (62)
+||.|=+++.|-||..+.
T Consensus 67 v~~dg~~~~~dfw~~~~S 84 (110)
T d1oz2a1 67 LHFDGYSECHDFWVNANS 84 (110)
T ss_dssp EEETTSCGGGCEEEETTC
T ss_pred EEECCCCCCCCEEEECCC
Confidence 779999999999986543
No 10
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]}
Probab=19.18 E-value=65 Score=18.93 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=19.2
Q ss_pred cccCceEEEEeccCCCCceEecCcceeeCCCCCCCcceeeeeeeCCC
Q psy10679 2 ILSGSALVKINVNTEQGGLTLDEDFIVDLGLEPNGPALAHEIRYPGG 48 (62)
Q Consensus 2 ~~~G~~m~kiDvd~~~GGl~ld~~F~VDFg~~p~Gp~raHeiR~pGG 48 (62)
|.-||.+.-..+++ |+ -+-.|.++||.|
T Consensus 7 V~~Gs~i~l~~~~t--~~-----------------~LHSH~~~Y~~g 34 (178)
T d1t9fa_ 7 VTCYSVLKFINAND--GS-----------------RLHSHDVKYGSG 34 (178)
T ss_dssp CBTTCEEEEEETTT--CC-----------------EEEEEEEECSSS
T ss_pred EEECeEEEEEECCC--CC-----------------ceecCcccCCCC
Confidence 45577777777764 22 166889999987
Done!