RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10679
         (62 letters)



>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller,
           structural genomics, unknown function; 2.00A {Sulfolobus
           tokodaii}
          Length = 462

 Score = 65.6 bits (159), Expect = 6e-15
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)

Query: 6   SALVKINVNTEQGGLTLDEDFIVDLGLEPNGPALAHEIRYPGGDCTSDIWLVP 58
             +VK+N N   GGL +D++F VD G      A +H++R  GGD +SD +  P
Sbjct: 416 GWMVKLNANPS-GGLEIDKEFFVDFG-----EARSHQVRLSGGDASSDSYCYP 462


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.7 bits (63), Expect = 0.10
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 14/75 (18%)

Query: 2   ILSGSALVKINVNTEQGGLTLDED---FIVDLGLEPNG-PALAHEI----------RYPG 47
            LS +    I+++     LT DE     +  L   P   P                    
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 48  GDCTSDIWLVPNDEQ 62
           G  T D W   N ++
Sbjct: 340 GLATWDNWKHVNCDK 354


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.3 bits (54), Expect = 1.3
 Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 15/35 (42%)

Query: 7  ALVKINVNTEQGGLTLDEDFIVDLGLEPN-GPALA 40
          AL K+     Q  L L            +  PALA
Sbjct: 21 ALKKL-----QASLKL---------YADDSAPALA 41


>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
          transcription factor, DNA-binding, DNA-directed RNA
          polymerase; 4.30A {Saccharomyces cerevisiae}
          Length = 197

 Score = 24.6 bits (53), Expect = 2.1
 Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 8/36 (22%)

Query: 5  GSALVKINVNTEQG-------GLTLDEDFIVDLGLE 33
               KI     +G       GL L +  +VD   E
Sbjct: 28 KVYPPKIVERFSEGDVVCALCGLVLSDK-LVDTRSE 62


>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical
          protein, JW0472, structural genomics, NPPSFA; 2.25A
          {Escherichia coli}
          Length = 113

 Score = 24.4 bits (53), Expect = 2.4
 Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)

Query: 19 GLTLDEDFIVDLGLEPNGPALAHEIRYP 46
          G  L  +++  L L+ N   LA  +   
Sbjct: 12 GDILLYEYLEPLDLKIN--ELAELLHVH 37


>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi
          tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles
          gambiae}
          Length = 365

 Score = 23.1 bits (50), Expect = 6.9
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 7/42 (16%)

Query: 5  GSALVKINVNTEQGGLTLDEDFIVDLGLEPNGPALAHEIRYP 46
          G+ L+ I+          ++D +    ++PN   LA E   P
Sbjct: 30 GNPLLDISAVV-------EKDLLNKYDMQPNNAILAEEKHMP 64


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 983,360
Number of extensions: 45632
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 7
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)