RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10679
         (62 letters)



>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3
          {Escherichia coli [TaxId: 562]}
          Length = 65

 Score = 22.7 bits (49), Expect = 2.6
 Identities = 6/15 (40%), Positives = 7/15 (46%)

Query: 43 IRYPGGDCTSDIWLV 57
           R PGG  T+  W  
Sbjct: 4  CRLPGGVITTKQWQA 18


>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 22.7 bits (48), Expect = 3.5
 Identities = 6/52 (11%), Positives = 12/52 (23%)

Query: 5  GSALVKINVNTEQGGLTLDEDFIVDLGLEPNGPALAHEIRYPGGDCTSDIWL 56
          GSA       +   G+    +  V   +              G    ++   
Sbjct: 19 GSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSR 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 237,678
Number of extensions: 8238
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 2
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.4 bits)