Query psy10680
Match_columns 537
No_of_seqs 164 out of 1916
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 15:55:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331|consensus 100.0 1.2E-57 2.7E-62 456.7 29.6 385 23-513 92-478 (519)
2 PTZ00110 helicase; Provisional 100.0 2.6E-54 5.6E-59 456.0 27.0 387 19-515 127-516 (545)
3 KOG0330|consensus 100.0 2.4E-54 5.1E-59 406.3 22.9 362 20-499 59-423 (476)
4 PLN00206 DEAD-box ATP-dependen 100.0 4.7E-52 1E-56 437.7 29.9 382 18-510 117-502 (518)
5 KOG0336|consensus 100.0 1.7E-51 3.8E-56 388.3 21.4 387 16-516 214-605 (629)
6 KOG0328|consensus 100.0 5.1E-51 1.1E-55 368.1 22.7 370 20-506 25-396 (400)
7 KOG0335|consensus 100.0 7.1E-51 1.5E-55 401.0 25.7 390 23-511 75-472 (482)
8 KOG0333|consensus 100.0 6.8E-51 1.5E-55 395.7 21.0 380 19-507 242-649 (673)
9 COG0513 SrmB Superfamily II DN 100.0 1.7E-50 3.6E-55 422.9 24.5 368 22-506 29-407 (513)
10 PRK04837 ATP-dependent RNA hel 100.0 1.7E-50 3.7E-55 418.2 24.2 368 21-498 7-377 (423)
11 PRK10590 ATP-dependent RNA hel 100.0 3.5E-49 7.5E-54 411.1 27.1 362 23-497 2-366 (456)
12 PRK11776 ATP-dependent RNA hel 100.0 4.2E-49 9.1E-54 412.2 26.5 354 22-497 4-363 (460)
13 KOG0339|consensus 100.0 2.5E-49 5.4E-54 382.9 22.4 395 11-516 212-608 (731)
14 KOG0340|consensus 100.0 7.6E-49 1.6E-53 365.0 21.1 385 20-519 5-413 (442)
15 PRK04537 ATP-dependent RNA hel 100.0 2.8E-48 6E-53 411.4 27.3 366 22-497 9-378 (572)
16 KOG0338|consensus 100.0 1.5E-48 3.2E-53 378.1 21.5 363 21-495 180-545 (691)
17 PRK11192 ATP-dependent RNA hel 100.0 7.7E-48 1.7E-52 400.3 27.8 363 23-497 2-366 (434)
18 PRK11634 ATP-dependent RNA hel 100.0 3.4E-48 7.5E-53 412.7 25.1 355 21-496 5-365 (629)
19 KOG0341|consensus 100.0 3.3E-48 7.1E-53 363.8 20.1 392 10-515 158-561 (610)
20 KOG0342|consensus 100.0 4.7E-48 1E-52 374.4 20.7 366 18-492 78-446 (543)
21 PRK01297 ATP-dependent RNA hel 100.0 2.4E-47 5.3E-52 400.0 26.0 368 21-498 86-457 (475)
22 KOG0345|consensus 100.0 1.8E-47 3.9E-52 367.8 22.7 352 22-484 4-365 (567)
23 KOG0348|consensus 100.0 1.4E-47 3E-52 373.3 22.1 406 13-495 127-566 (708)
24 KOG0326|consensus 100.0 2.8E-48 6.1E-53 356.0 15.6 370 18-506 81-452 (459)
25 PTZ00424 helicase 45; Provisio 100.0 1E-46 2.2E-51 389.1 26.9 362 20-498 26-389 (401)
26 KOG0334|consensus 100.0 2.8E-46 6E-51 392.9 19.8 396 10-516 353-753 (997)
27 KOG0347|consensus 100.0 2.8E-46 6E-51 365.3 18.0 390 21-499 180-586 (731)
28 KOG0343|consensus 100.0 8E-44 1.7E-48 348.1 23.9 356 20-487 67-426 (758)
29 TIGR03817 DECH_helic helicase/ 100.0 1.5E-43 3.2E-48 384.5 24.4 395 26-528 18-440 (742)
30 PLN03137 ATP-dependent DNA hel 100.0 8.3E-43 1.8E-47 375.9 22.9 376 26-529 441-852 (1195)
31 KOG0346|consensus 100.0 5.1E-43 1.1E-47 334.2 17.8 367 21-496 18-423 (569)
32 TIGR00614 recQ_fam ATP-depende 100.0 1.2E-42 2.7E-47 362.9 21.6 363 37-529 3-382 (470)
33 KOG0332|consensus 100.0 2E-42 4.3E-47 324.0 17.4 379 13-511 81-473 (477)
34 KOG0344|consensus 100.0 5.2E-42 1.1E-46 340.2 19.7 375 27-511 141-523 (593)
35 KOG4284|consensus 100.0 2.6E-41 5.6E-46 335.5 17.7 352 23-485 26-381 (980)
36 KOG0350|consensus 100.0 1.6E-40 3.5E-45 321.9 22.0 378 39-497 153-554 (620)
37 KOG0327|consensus 100.0 2.4E-41 5.2E-46 319.7 15.3 366 22-506 26-393 (397)
38 PRK11057 ATP-dependent DNA hel 100.0 2.4E-40 5.3E-45 354.5 24.3 363 35-530 15-393 (607)
39 KOG0337|consensus 100.0 7.3E-41 1.6E-45 318.0 15.7 362 21-498 20-383 (529)
40 TIGR01389 recQ ATP-dependent D 100.0 6.3E-40 1.4E-44 352.5 23.8 362 36-529 4-381 (591)
41 PRK13767 ATP-dependent helicas 100.0 4.2E-40 9.1E-45 364.5 20.0 354 28-482 17-397 (876)
42 PRK02362 ski2-like helicase; P 100.0 1E-39 2.2E-44 358.4 21.3 345 23-483 2-397 (737)
43 COG1201 Lhr Lhr-like helicases 100.0 3.2E-38 7E-43 334.2 20.3 348 28-482 7-361 (814)
44 COG1111 MPH1 ERCC4-like helica 100.0 2E-37 4.4E-42 303.1 22.1 388 45-484 15-482 (542)
45 PRK00254 ski2-like helicase; P 100.0 1.5E-37 3.1E-42 340.5 22.2 340 24-484 3-389 (720)
46 COG0514 RecQ Superfamily II DN 100.0 4E-37 8.7E-42 314.8 22.4 368 35-529 7-387 (590)
47 TIGR00580 mfd transcription-re 100.0 1.5E-36 3.3E-41 332.6 23.1 319 30-483 437-770 (926)
48 PRK10917 ATP-dependent DNA hel 100.0 4.7E-36 1E-40 324.7 25.4 320 31-483 248-589 (681)
49 TIGR00643 recG ATP-dependent D 100.0 1.5E-35 3.4E-40 318.8 26.9 336 32-497 223-580 (630)
50 PRK01172 ski2-like helicase; P 100.0 4.5E-36 9.8E-41 327.4 20.6 336 24-483 3-378 (674)
51 PRK10689 transcription-repair 100.0 1E-34 2.2E-39 324.8 23.1 318 32-483 588-919 (1147)
52 KOG0354|consensus 100.0 6.4E-34 1.4E-38 294.4 22.6 391 44-486 61-532 (746)
53 PRK09751 putative ATP-dependen 100.0 2.8E-34 6E-39 322.7 20.6 315 65-470 1-371 (1490)
54 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.3E-33 2.7E-38 301.1 21.2 317 40-481 11-389 (844)
55 PHA02558 uvsW UvsW helicase; P 100.0 6.6E-33 1.4E-37 291.2 23.9 335 44-480 113-449 (501)
56 COG1204 Superfamily II helicas 100.0 3.2E-32 6.9E-37 292.8 20.1 347 36-480 22-405 (766)
57 KOG0329|consensus 100.0 2.7E-32 5.7E-37 243.6 14.3 330 21-505 41-378 (387)
58 PRK13766 Hef nuclease; Provisi 100.0 3E-31 6.4E-36 294.9 24.7 388 44-484 14-480 (773)
59 COG1202 Superfamily II helicas 100.0 3E-32 6.4E-37 268.5 14.7 351 17-483 189-553 (830)
60 PRK09401 reverse gyrase; Revie 100.0 6.5E-31 1.4E-35 295.0 21.8 302 37-469 73-430 (1176)
61 KOG0352|consensus 100.0 7.9E-31 1.7E-35 249.9 17.3 345 32-491 6-370 (641)
62 COG1205 Distinct helicase fami 100.0 8.3E-31 1.8E-35 285.8 19.9 338 33-482 59-421 (851)
63 PRK14701 reverse gyrase; Provi 100.0 1.8E-30 3.8E-35 297.2 19.2 310 35-477 70-450 (1638)
64 TIGR01587 cas3_core CRISPR-ass 100.0 2.5E-30 5.4E-35 262.6 18.0 303 62-485 1-338 (358)
65 KOG0351|consensus 100.0 4.4E-30 9.4E-35 278.0 20.2 342 29-495 248-604 (941)
66 PHA02653 RNA helicase NPH-II; 100.0 6.6E-30 1.4E-34 271.4 20.2 327 47-485 166-516 (675)
67 TIGR00603 rad25 DNA repair hel 100.0 2.2E-29 4.7E-34 266.2 22.7 347 44-496 254-622 (732)
68 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.1E-29 4.4E-34 273.9 20.5 303 50-485 7-338 (819)
69 COG1200 RecG RecG-like helicas 100.0 7.1E-29 1.5E-33 253.4 23.2 340 27-497 245-605 (677)
70 PRK09200 preprotein translocas 100.0 8.9E-29 1.9E-33 264.1 23.9 394 36-484 70-542 (790)
71 PRK11664 ATP-dependent RNA hel 100.0 1.9E-29 4.1E-34 274.8 17.3 305 50-485 10-341 (812)
72 PRK12898 secA preprotein trans 100.0 2.5E-28 5.3E-33 255.3 24.5 391 39-484 98-587 (656)
73 PRK05580 primosome assembly pr 100.0 9E-29 1.9E-33 267.0 21.6 372 45-489 144-555 (679)
74 KOG0952|consensus 100.0 1.1E-29 2.4E-34 265.8 13.9 361 40-509 105-513 (1230)
75 KOG0349|consensus 100.0 1.4E-28 3E-33 234.9 19.5 312 131-482 286-614 (725)
76 TIGR00963 secA preprotein tran 100.0 4.1E-28 8.8E-33 254.9 20.3 379 35-484 47-518 (745)
77 TIGR03714 secA2 accessory Sec 100.0 5.4E-28 1.2E-32 255.6 20.5 108 373-484 422-538 (762)
78 TIGR01054 rgy reverse gyrase. 100.0 5.9E-28 1.3E-32 271.6 20.3 286 40-455 74-409 (1171)
79 KOG0353|consensus 100.0 1.8E-28 4E-33 230.5 11.2 343 25-493 74-477 (695)
80 TIGR03158 cas3_cyano CRISPR-as 100.0 1.3E-27 2.8E-32 240.4 17.6 311 49-468 1-357 (357)
81 COG1061 SSL2 DNA or RNA helica 99.9 5.7E-27 1.2E-31 241.5 19.4 329 45-469 36-375 (442)
82 TIGR00595 priA primosomal prot 99.9 2.2E-26 4.9E-31 239.9 18.9 349 64-485 1-383 (505)
83 COG1197 Mfd Transcription-repa 99.9 1.3E-25 2.9E-30 241.8 24.6 322 29-484 579-914 (1139)
84 PRK04914 ATP-dependent helicas 99.9 2.7E-25 5.9E-30 243.2 21.4 123 374-497 492-617 (956)
85 KOG0947|consensus 99.9 1.8E-25 3.8E-30 231.9 15.4 364 40-483 293-723 (1248)
86 cd00268 DEADc DEAD-box helicas 99.9 7E-25 1.5E-29 204.4 16.6 184 24-250 1-185 (203)
87 KOG0951|consensus 99.9 8.2E-26 1.8E-30 239.7 11.1 379 24-486 291-705 (1674)
88 PRK11131 ATP-dependent RNA hel 99.9 7.3E-25 1.6E-29 243.0 18.0 309 47-486 76-414 (1294)
89 COG4581 Superfamily II RNA hel 99.9 2.1E-24 4.5E-29 232.6 19.4 166 39-259 114-283 (1041)
90 PRK11448 hsdR type I restricti 99.9 4.6E-24 9.9E-29 238.7 20.4 346 45-472 413-802 (1123)
91 PRK09694 helicase Cas3; Provis 99.9 7.5E-23 1.6E-27 222.8 24.4 334 43-472 284-664 (878)
92 KOG0948|consensus 99.9 4.9E-24 1.1E-28 216.2 12.7 357 39-482 124-538 (1041)
93 PRK13104 secA preprotein trans 99.9 8.7E-23 1.9E-27 217.7 19.8 376 40-484 78-588 (896)
94 TIGR01967 DEAH_box_HrpA ATP-de 99.9 3.4E-23 7.4E-28 230.6 16.1 307 51-486 73-407 (1283)
95 PF00270 DEAD: DEAD/DEAH box h 99.9 5.3E-23 1.2E-27 185.8 14.3 162 47-250 1-163 (169)
96 PRK12899 secA preprotein trans 99.9 4E-22 8.7E-27 212.3 18.5 150 25-219 65-229 (970)
97 COG4098 comFA Superfamily II D 99.9 7.1E-22 1.5E-26 184.6 17.2 300 45-475 97-406 (441)
98 PRK12904 preprotein translocas 99.9 1.6E-21 3.6E-26 207.9 19.3 377 36-484 73-574 (830)
99 PLN03142 Probable chromatin-re 99.9 6.1E-21 1.3E-25 209.8 23.2 374 45-479 169-593 (1033)
100 PRK12906 secA preprotein trans 99.9 3.1E-21 6.8E-26 205.0 18.5 394 35-484 71-554 (796)
101 KOG0950|consensus 99.9 7.7E-22 1.7E-26 206.5 12.7 351 33-490 211-618 (1008)
102 COG1198 PriA Primosomal protei 99.9 1.5E-21 3.3E-26 206.4 14.8 365 44-491 197-611 (730)
103 KOG0949|consensus 99.9 3.1E-20 6.7E-25 193.6 20.0 165 45-257 511-682 (1330)
104 PRK13107 preprotein translocas 99.8 1.4E-20 3E-25 200.4 15.8 110 372-484 446-592 (908)
105 COG4096 HsdR Type I site-speci 99.8 2E-19 4.4E-24 186.8 12.4 330 44-470 164-525 (875)
106 COG0556 UvrB Helicase subunit 99.8 1.1E-18 2.4E-23 172.3 15.1 143 363-507 433-590 (663)
107 COG1203 CRISPR-associated heli 99.8 1.6E-18 3.5E-23 189.4 15.7 337 45-493 195-560 (733)
108 TIGR00631 uvrb excinuclease AB 99.8 4.5E-18 9.8E-23 181.9 18.4 132 373-506 440-585 (655)
109 KOG0385|consensus 99.8 1.5E-17 3.3E-22 170.1 20.4 377 45-482 167-598 (971)
110 TIGR00348 hsdR type I site-spe 99.8 8.3E-18 1.8E-22 182.0 15.9 153 45-251 238-404 (667)
111 COG1643 HrpA HrpA-like helicas 99.8 4.3E-18 9.4E-23 183.0 12.4 305 46-484 51-388 (845)
112 PRK05298 excinuclease ABC subu 99.7 5.1E-17 1.1E-21 175.2 19.5 133 373-507 444-590 (652)
113 COG4889 Predicted helicase [Ge 99.7 1.1E-16 2.3E-21 165.6 18.8 424 5-500 125-618 (1518)
114 COG1110 Reverse gyrase [DNA re 99.7 8.7E-17 1.9E-21 169.8 16.7 318 39-455 77-417 (1187)
115 smart00487 DEXDc DEAD-like hel 99.7 1.5E-16 3.2E-21 147.1 16.6 169 40-253 3-174 (201)
116 KOG0922|consensus 99.7 1.1E-16 2.4E-21 162.9 14.6 83 403-486 293-393 (674)
117 KOG0390|consensus 99.7 7.1E-16 1.5E-20 162.7 18.5 390 45-479 238-701 (776)
118 KOG0387|consensus 99.7 5.2E-16 1.1E-20 159.8 15.8 386 45-482 205-657 (923)
119 PF00271 Helicase_C: Helicase 99.7 4.7E-17 1E-21 126.5 5.9 77 395-471 2-78 (78)
120 TIGR01407 dinG_rel DnaQ family 99.7 1.6E-15 3.4E-20 169.4 19.6 117 376-496 675-829 (850)
121 KOG0920|consensus 99.7 6.1E-16 1.3E-20 165.9 12.6 343 46-484 174-545 (924)
122 KOG0923|consensus 99.6 1.6E-15 3.5E-20 153.1 12.2 311 45-482 265-605 (902)
123 PRK12900 secA preprotein trans 99.6 2E-15 4.4E-20 161.9 13.5 109 373-484 596-712 (1025)
124 KOG0384|consensus 99.6 8.9E-15 1.9E-19 157.0 17.7 381 44-483 369-811 (1373)
125 KOG0953|consensus 99.6 4.4E-15 9.6E-20 147.4 14.1 259 62-472 193-463 (700)
126 KOG1123|consensus 99.6 2.6E-15 5.7E-20 147.0 11.9 321 44-471 301-635 (776)
127 KOG4150|consensus 99.6 8.5E-16 1.8E-20 152.3 7.2 386 35-528 276-695 (1034)
128 KOG0389|consensus 99.6 3E-14 6.4E-19 146.9 18.2 110 373-483 775-888 (941)
129 PRK12326 preprotein translocas 99.6 5E-14 1.1E-18 147.3 19.3 135 36-218 70-211 (764)
130 PRK13103 secA preprotein trans 99.6 1.5E-14 3.2E-19 154.9 15.2 131 40-218 78-215 (913)
131 cd00046 DEXDc DEAD-like helica 99.6 3.8E-14 8.1E-19 123.2 14.0 143 61-249 1-144 (144)
132 KOG0924|consensus 99.6 1.2E-14 2.6E-19 147.1 10.7 83 399-482 596-696 (1042)
133 KOG0951|consensus 99.6 6.5E-14 1.4E-18 150.3 16.6 363 4-492 1103-1503(1674)
134 PF04851 ResIII: Type III rest 99.6 1.2E-14 2.6E-19 132.9 9.5 153 45-251 3-184 (184)
135 cd00079 HELICc Helicase superf 99.5 1.4E-14 2.9E-19 124.7 6.4 104 375-479 28-131 (131)
136 KOG0392|consensus 99.5 5.8E-13 1.3E-17 142.9 16.8 103 374-476 1339-1445(1549)
137 PRK07246 bifunctional ATP-depe 99.5 4.4E-13 9.4E-18 147.9 15.7 120 373-496 645-798 (820)
138 KOG1000|consensus 99.5 7.8E-13 1.7E-17 129.8 15.5 360 44-479 197-597 (689)
139 PRK14873 primosome assembly pr 99.5 6.4E-13 1.4E-17 142.1 15.9 304 131-482 188-538 (665)
140 smart00490 HELICc helicase sup 99.5 7.7E-14 1.7E-18 109.2 6.1 78 394-471 5-82 (82)
141 KOG0926|consensus 99.4 2.7E-12 5.7E-17 132.6 16.6 82 401-483 605-704 (1172)
142 PRK12903 secA preprotein trans 99.4 6.9E-12 1.5E-16 133.3 13.9 134 37-218 71-211 (925)
143 KOG1002|consensus 99.3 3.3E-11 7.2E-16 118.4 16.9 145 353-500 613-764 (791)
144 CHL00122 secA preprotein trans 99.3 5.2E-11 1.1E-15 127.5 18.6 135 36-218 68-209 (870)
145 KOG0925|consensus 99.3 1.1E-11 2.4E-16 121.6 11.6 181 21-260 24-214 (699)
146 KOG4439|consensus 99.2 9.5E-11 2.1E-15 119.9 14.2 102 377-478 747-851 (901)
147 KOG0386|consensus 99.2 7.8E-11 1.7E-15 124.9 11.2 117 375-492 726-845 (1157)
148 PRK12902 secA preprotein trans 99.2 9.4E-10 2E-14 117.8 19.1 132 39-218 80-218 (939)
149 PF00176 SNF2_N: SNF2 family N 99.1 2.7E-10 5.8E-15 112.8 10.4 146 59-249 24-172 (299)
150 TIGR02562 cas3_yersinia CRISPR 99.1 7.4E-10 1.6E-14 120.3 14.4 90 380-472 761-881 (1110)
151 COG1199 DinG Rad3-related DNA 99.1 1.1E-09 2.4E-14 120.2 15.9 72 40-153 10-85 (654)
152 TIGR03117 cas_csf4 CRISPR-asso 99.1 3.9E-10 8.4E-15 119.5 11.1 107 374-483 469-616 (636)
153 KOG0391|consensus 99.1 4.5E-09 9.7E-14 112.8 16.7 136 375-518 1276-1415(1958)
154 COG0553 HepA Superfamily II DN 99.1 1.6E-09 3.4E-14 123.5 14.6 127 371-498 705-835 (866)
155 smart00489 DEXDc3 DEAD-like he 99.0 1.2E-09 2.6E-14 106.6 10.7 76 41-154 5-84 (289)
156 smart00488 DEXDc2 DEAD-like he 99.0 1.2E-09 2.6E-14 106.6 10.7 76 41-154 5-84 (289)
157 PF07652 Flavi_DEAD: Flaviviru 99.0 1.2E-09 2.7E-14 92.0 8.6 105 59-217 3-107 (148)
158 KOG0388|consensus 99.0 6.5E-09 1.4E-13 106.5 14.2 99 377-476 1046-1145(1185)
159 PRK08074 bifunctional ATP-depe 98.9 6.4E-09 1.4E-13 117.3 12.3 122 374-496 751-908 (928)
160 PF06862 DUF1253: Protein of u 98.8 3.2E-07 6.9E-12 92.8 18.8 117 376-493 301-425 (442)
161 PRK12901 secA preprotein trans 98.8 6.3E-08 1.4E-12 105.2 14.0 108 373-484 626-742 (1112)
162 COG0610 Type I site-specific r 98.8 8.6E-08 1.9E-12 107.7 15.2 114 61-219 274-390 (962)
163 PF02399 Herpes_ori_bp: Origin 98.8 1.6E-07 3.4E-12 100.1 15.5 105 371-483 278-388 (824)
164 KOG1015|consensus 98.6 1E-06 2.2E-11 93.5 16.6 80 400-479 1188-1271(1567)
165 KOG2340|consensus 98.6 1.1E-06 2.3E-11 88.1 15.9 113 379-492 556-677 (698)
166 PF07517 SecA_DEAD: SecA DEAD- 98.6 1.7E-07 3.7E-12 89.1 9.4 132 39-218 72-210 (266)
167 PRK11747 dinG ATP-dependent DN 98.6 2E-07 4.2E-12 102.1 10.1 115 376-495 535-688 (697)
168 TIGR00604 rad3 DNA repair heli 98.5 2.8E-07 6.1E-12 101.6 10.1 75 40-154 5-83 (705)
169 PF13086 AAA_11: AAA domain; P 98.5 4.1E-07 8.9E-12 86.3 8.2 72 46-153 2-75 (236)
170 KOG0952|consensus 98.4 1.6E-07 3.5E-12 100.8 3.4 172 4-220 887-1061(1230)
171 KOG1802|consensus 98.0 1.8E-05 4E-10 81.5 8.9 72 40-153 405-476 (935)
172 PF12340 DUF3638: Protein of u 98.0 2.4E-05 5.1E-10 72.2 8.8 152 22-219 3-186 (229)
173 PRK15483 type III restriction- 98.0 3.4E-05 7.3E-10 85.0 11.3 73 426-498 501-583 (986)
174 PF13604 AAA_30: AAA domain; P 97.9 1.2E-05 2.5E-10 74.0 5.0 63 45-150 1-65 (196)
175 COG0653 SecA Preprotein transl 97.9 0.00033 7E-09 75.8 15.5 130 41-218 77-213 (822)
176 KOG0921|consensus 97.9 2.8E-05 6.1E-10 82.7 7.3 81 401-482 675-773 (1282)
177 TIGR00376 DNA helicase, putati 97.8 7.6E-05 1.7E-09 80.9 9.8 67 44-153 156-223 (637)
178 COG3587 Restriction endonuclea 97.8 0.00092 2E-08 71.5 16.5 73 425-497 482-567 (985)
179 TIGR00596 rad1 DNA repair prot 97.8 0.00028 6E-09 77.8 12.9 53 180-232 6-58 (814)
180 KOG1001|consensus 97.8 6.7E-05 1.5E-09 80.7 8.0 101 377-478 541-643 (674)
181 PF09848 DUF2075: Uncharacteri 97.7 6.2E-05 1.3E-09 76.1 7.2 95 62-219 3-97 (352)
182 KOG1803|consensus 97.7 0.0002 4.4E-09 73.7 9.7 66 44-152 184-250 (649)
183 PF02562 PhoH: PhoH-like prote 97.7 4.1E-05 8.9E-10 70.0 4.2 34 43-76 2-35 (205)
184 KOG1016|consensus 97.6 0.0065 1.4E-07 64.3 19.1 89 405-493 766-857 (1387)
185 PF13245 AAA_19: Part of AAA d 97.6 0.00015 3.2E-09 55.3 5.1 53 60-151 10-62 (76)
186 PF13872 AAA_34: P-loop contai 97.5 0.00048 1E-08 66.1 9.6 153 45-248 37-219 (303)
187 KOG1132|consensus 97.3 0.00085 1.8E-08 72.0 8.8 40 36-76 13-56 (945)
188 PRK10536 hypothetical protein; 97.3 0.0017 3.6E-08 61.3 9.6 36 41-76 55-90 (262)
189 PF13307 Helicase_C_2: Helicas 97.2 0.00064 1.4E-08 60.8 5.6 105 376-483 10-150 (167)
190 TIGR01447 recD exodeoxyribonuc 97.1 0.002 4.4E-08 69.0 9.8 69 47-153 147-215 (586)
191 TIGR01448 recD_rel helicase, p 97.1 0.0016 3.6E-08 71.8 8.3 35 41-76 320-354 (720)
192 PRK10875 recD exonuclease V su 97.0 0.0023 4.9E-08 68.9 8.8 68 47-153 154-221 (615)
193 KOG1805|consensus 97.0 0.0012 2.7E-08 71.4 6.0 160 7-220 638-811 (1100)
194 TIGR02768 TraA_Ti Ti-type conj 96.9 0.0018 3.9E-08 71.7 6.7 32 45-76 352-384 (744)
195 PF00580 UvrD-helicase: UvrD/R 96.8 0.0019 4.1E-08 64.1 5.9 123 46-215 1-125 (315)
196 PF05970 PIF1: PIF1-like helic 96.8 0.0016 3.6E-08 66.0 5.2 31 46-76 2-38 (364)
197 PRK08181 transposase; Validate 96.7 0.0075 1.6E-07 58.1 9.1 31 46-76 88-122 (269)
198 PF13401 AAA_22: AAA domain; P 96.7 0.001 2.3E-08 56.6 2.6 18 59-76 3-20 (131)
199 PRK13889 conjugal transfer rel 96.7 0.0024 5.2E-08 71.9 6.1 35 41-76 343-378 (988)
200 PRK06526 transposase; Provisio 96.6 0.0051 1.1E-07 58.8 7.1 22 55-76 93-114 (254)
201 PF14617 CMS1: U3-containing 9 96.4 0.0066 1.4E-07 57.3 6.0 87 129-216 124-212 (252)
202 COG1875 NYN ribonuclease and A 96.3 0.0073 1.6E-07 59.0 5.8 66 39-144 222-289 (436)
203 KOG1131|consensus 96.3 0.018 3.8E-07 58.6 8.5 36 41-76 12-51 (755)
204 smart00492 HELICc3 helicase su 96.2 0.013 2.9E-07 50.5 6.6 74 409-482 30-137 (141)
205 PRK08074 bifunctional ATP-depe 96.2 0.0086 1.9E-07 68.3 6.6 65 42-149 255-323 (928)
206 PRK06921 hypothetical protein; 96.1 0.02 4.2E-07 55.3 7.8 17 60-76 117-133 (266)
207 cd00009 AAA The AAA+ (ATPases 96.1 0.023 5E-07 48.8 7.4 17 60-76 19-35 (151)
208 COG1484 DnaC DNA replication p 96.0 0.011 2.5E-07 56.5 5.8 69 40-152 78-153 (254)
209 smart00491 HELICc2 helicase su 96.0 0.018 4E-07 49.7 6.2 68 415-482 33-138 (142)
210 PRK13826 Dtr system oriT relax 95.9 0.014 3E-07 66.4 6.7 32 45-76 381-413 (1102)
211 smart00382 AAA ATPases associa 95.9 0.005 1.1E-07 52.6 2.3 17 60-76 2-18 (148)
212 PRK07952 DNA replication prote 95.9 0.048 1E-06 51.8 9.0 30 203-232 160-190 (244)
213 PF13871 Helicase_C_4: Helicas 95.8 0.03 6.6E-07 53.6 7.5 58 417-474 52-117 (278)
214 PF05621 TniB: Bacterial TniB 95.8 0.038 8.3E-07 53.4 8.2 16 61-76 62-77 (302)
215 PRK04296 thymidine kinase; Pro 95.8 0.0066 1.4E-07 55.5 2.8 16 61-76 3-18 (190)
216 PRK12723 flagellar biosynthesi 95.8 0.045 9.7E-07 55.6 8.9 16 61-76 175-190 (388)
217 KOG0298|consensus 95.7 0.022 4.7E-07 63.9 6.6 111 131-249 420-550 (1394)
218 PRK12377 putative replication 95.7 0.056 1.2E-06 51.4 8.6 16 61-76 102-117 (248)
219 PRK06835 DNA replication prote 95.4 0.05 1.1E-06 54.1 7.7 18 59-76 182-199 (329)
220 PRK11331 5-methylcytosine-spec 95.3 0.041 8.9E-07 56.4 6.9 31 46-76 180-210 (459)
221 PRK11054 helD DNA helicase IV; 95.3 0.025 5.4E-07 62.0 5.7 72 44-156 195-266 (684)
222 PRK11747 dinG ATP-dependent DN 95.3 0.047 1E-06 60.3 7.8 64 42-148 23-95 (697)
223 PRK08727 hypothetical protein; 95.3 0.039 8.5E-07 52.2 6.1 16 61-76 42-57 (233)
224 TIGR01075 uvrD DNA helicase II 95.2 0.034 7.3E-07 61.9 6.3 72 44-156 3-74 (715)
225 PRK10919 ATP-dependent DNA hel 95.1 0.027 5.9E-07 62.0 5.3 71 45-156 2-72 (672)
226 COG3421 Uncharacterized protei 95.1 0.017 3.6E-07 59.8 3.3 41 180-220 80-127 (812)
227 PRK00149 dnaA chromosomal repl 95.1 0.089 1.9E-06 55.1 8.9 16 61-76 149-164 (450)
228 PRK05642 DNA replication initi 95.0 0.061 1.3E-06 51.0 6.6 42 204-248 96-138 (234)
229 TIGR00362 DnaA chromosomal rep 95.0 0.11 2.4E-06 53.7 9.1 15 62-76 138-152 (405)
230 PRK09183 transposase/IS protei 95.0 0.1 2.3E-06 50.2 8.3 21 56-76 98-118 (259)
231 cd01122 GP4d_helicase GP4d_hel 95.0 0.13 2.8E-06 50.0 9.0 44 32-76 3-46 (271)
232 PRK11773 uvrD DNA-dependent he 94.9 0.058 1.3E-06 60.1 7.1 71 45-156 9-79 (721)
233 PRK08116 hypothetical protein; 94.9 0.17 3.8E-06 48.9 9.5 16 61-76 115-130 (268)
234 cd01120 RecA-like_NTPases RecA 94.8 0.13 2.8E-06 45.2 7.9 17 203-219 83-99 (165)
235 KOG0989|consensus 94.5 0.059 1.3E-06 51.7 5.1 32 202-234 126-157 (346)
236 PTZ00112 origin recognition co 94.5 0.12 2.7E-06 56.8 8.0 27 204-231 868-894 (1164)
237 PRK06893 DNA replication initi 94.4 0.092 2E-06 49.6 6.3 31 204-234 90-121 (229)
238 PF00308 Bac_DnaA: Bacterial d 94.4 0.044 9.6E-07 51.3 4.0 33 203-235 95-128 (219)
239 PRK14722 flhF flagellar biosyn 94.4 0.076 1.7E-06 53.5 5.8 18 59-76 136-153 (374)
240 TIGR00604 rad3 DNA repair heli 94.3 0.13 2.7E-06 57.3 8.0 125 376-510 523-692 (705)
241 PRK08084 DNA replication initi 94.3 0.077 1.7E-06 50.3 5.5 16 61-76 46-61 (235)
242 PRK12422 chromosomal replicati 94.3 0.18 3.8E-06 52.6 8.5 30 204-233 201-231 (445)
243 TIGR01074 rep ATP-dependent DN 94.2 0.05 1.1E-06 60.2 4.6 70 46-156 2-71 (664)
244 cd01124 KaiC KaiC is a circadi 94.2 0.11 2.5E-06 47.0 6.2 14 63-76 2-15 (187)
245 TIGR03346 chaperone_ClpB ATP-d 94.1 0.13 2.8E-06 58.3 7.7 16 61-76 195-210 (852)
246 TIGR02785 addA_Gpos recombinat 94.1 0.1 2.2E-06 61.6 7.0 123 46-216 2-126 (1232)
247 PRK00411 cdc6 cell division co 94.0 0.21 4.6E-06 51.4 8.6 16 61-76 56-71 (394)
248 PF05496 RuvB_N: Holliday junc 94.0 0.07 1.5E-06 49.3 4.3 15 62-76 52-66 (233)
249 KOG0331|consensus 94.0 0.13 2.8E-06 53.5 6.7 74 240-313 214-288 (519)
250 PRK14088 dnaA chromosomal repl 93.9 0.25 5.4E-06 51.5 8.8 16 61-76 131-146 (440)
251 PRK08939 primosomal protein Dn 93.8 0.25 5.5E-06 48.7 8.2 17 60-76 156-172 (306)
252 PRK11823 DNA repair protein Ra 93.8 0.29 6.4E-06 51.0 9.0 18 59-76 79-96 (446)
253 COG3973 Superfamily I DNA and 93.8 0.16 3.5E-06 53.1 6.8 71 47-155 214-284 (747)
254 PF13177 DNA_pol3_delta2: DNA 93.7 0.23 4.9E-06 44.1 6.9 53 204-261 101-154 (162)
255 TIGR03420 DnaA_homol_Hda DnaA 93.7 0.25 5.4E-06 46.4 7.7 18 59-76 37-54 (226)
256 KOG0339|consensus 93.7 0.14 3.1E-06 52.1 6.1 76 240-315 345-420 (731)
257 TIGR03117 cas_csf4 CRISPR-asso 93.7 0.21 4.6E-06 53.9 7.9 60 55-155 11-70 (636)
258 PRK14087 dnaA chromosomal repl 93.6 0.25 5.3E-06 51.6 8.1 33 203-235 204-237 (450)
259 cd01121 Sms Sms (bacterial rad 93.5 0.35 7.6E-06 49.0 8.7 18 59-76 81-98 (372)
260 CHL00095 clpC Clp protease ATP 93.4 0.16 3.5E-06 57.4 6.7 16 61-76 201-216 (821)
261 PRK10865 protein disaggregatio 93.3 0.35 7.5E-06 54.8 9.3 16 61-76 200-215 (857)
262 PRK14712 conjugal transfer nic 93.3 0.1 2.2E-06 61.6 5.2 32 45-76 835-868 (1623)
263 TIGR01073 pcrA ATP-dependent D 93.3 0.15 3.2E-06 57.0 6.3 71 45-156 4-74 (726)
264 PF05876 Terminase_GpA: Phage 93.3 0.13 2.8E-06 55.2 5.5 126 45-219 16-148 (557)
265 PHA03333 putative ATPase subun 93.3 0.42 9.2E-06 51.3 9.1 65 50-156 177-241 (752)
266 PRK13833 conjugal transfer pro 93.2 0.1 2.2E-06 51.7 4.3 32 45-76 128-160 (323)
267 PF01695 IstB_IS21: IstB-like 93.2 0.11 2.3E-06 47.0 4.1 22 55-76 42-63 (178)
268 KOG0701|consensus 93.1 0.018 3.9E-07 67.1 -1.3 56 415-470 343-398 (1606)
269 PRK14086 dnaA chromosomal repl 93.1 0.27 5.7E-06 52.7 7.4 33 203-235 375-408 (617)
270 PRK11889 flhF flagellar biosyn 93.1 0.79 1.7E-05 46.4 10.3 16 61-76 242-257 (436)
271 COG1419 FlhF Flagellar GTP-bin 93.1 0.18 4E-06 50.6 5.9 18 59-76 202-219 (407)
272 PHA02533 17 large terminase pr 93.1 0.16 3.4E-06 54.1 5.7 123 45-219 59-183 (534)
273 cd00984 DnaB_C DnaB helicase C 93.1 0.25 5.3E-06 47.0 6.7 21 56-76 9-29 (242)
274 PRK05707 DNA polymerase III su 93.1 0.29 6.3E-06 48.8 7.3 32 45-76 3-38 (328)
275 TIGR02760 TraI_TIGR conjugativ 93.0 0.18 4E-06 61.8 6.8 32 45-76 429-462 (1960)
276 COG0470 HolB ATPase involved i 93.0 0.24 5.2E-06 49.3 6.8 53 203-260 107-160 (325)
277 PHA02544 44 clamp loader, smal 93.0 0.2 4.4E-06 49.8 6.2 28 205-232 100-127 (316)
278 PRK06995 flhF flagellar biosyn 92.8 0.32 7E-06 50.8 7.4 17 60-76 256-272 (484)
279 COG2256 MGS1 ATPase related to 92.7 0.28 6.1E-06 49.0 6.5 16 61-76 49-64 (436)
280 COG2804 PulE Type II secretory 92.6 0.12 2.7E-06 53.1 4.0 30 47-76 243-274 (500)
281 PRK14956 DNA polymerase III su 92.6 0.15 3.2E-06 53.0 4.6 15 62-76 42-56 (484)
282 PRK12402 replication factor C 92.5 0.25 5.5E-06 49.5 6.2 15 62-76 38-52 (337)
283 COG1435 Tdk Thymidine kinase [ 92.5 0.61 1.3E-05 42.0 7.7 35 184-219 62-96 (201)
284 TIGR01547 phage_term_2 phage t 92.5 0.22 4.7E-06 51.4 5.7 137 62-251 3-142 (396)
285 COG1474 CDC6 Cdc6-related prot 92.4 0.12 2.6E-06 52.2 3.7 30 203-233 121-150 (366)
286 KOG0744|consensus 92.4 0.72 1.6E-05 44.8 8.5 17 60-76 177-193 (423)
287 PRK08769 DNA polymerase III su 92.4 0.31 6.8E-06 48.2 6.4 33 44-76 3-42 (319)
288 TIGR02782 TrbB_P P-type conjug 92.2 0.2 4.4E-06 49.2 4.9 31 46-76 117-148 (299)
289 COG2255 RuvB Holliday junction 92.2 0.38 8.3E-06 45.8 6.3 16 61-76 53-68 (332)
290 PF03796 DnaB_C: DnaB-like hel 92.2 0.49 1.1E-05 45.5 7.5 45 204-248 129-177 (259)
291 PRK11034 clpA ATP-dependent Cl 92.1 0.28 6.1E-06 54.4 6.3 16 61-76 208-223 (758)
292 KOG0330|consensus 92.1 0.25 5.5E-06 48.8 5.2 75 240-314 178-253 (476)
293 PF10593 Z1: Z1 domain; Inter 92.1 0.3 6.4E-06 46.2 5.6 86 427-519 136-223 (239)
294 TIGR03345 VI_ClpV1 type VI sec 92.1 0.34 7.5E-06 54.7 7.0 16 61-76 209-224 (852)
295 PLN03025 replication factor C 92.0 0.4 8.6E-06 47.8 6.8 16 61-76 35-50 (319)
296 PRK07003 DNA polymerase III su 91.9 0.33 7.1E-06 53.0 6.2 17 204-220 118-134 (830)
297 KOG1133|consensus 91.9 0.12 2.5E-06 54.7 2.8 97 425-531 686-819 (821)
298 PRK13894 conjugal transfer ATP 91.9 0.17 3.7E-06 50.2 3.9 31 46-76 133-164 (319)
299 TIGR03600 phage_DnaB phage rep 91.8 0.56 1.2E-05 48.7 7.8 35 42-76 176-210 (421)
300 COG2805 PilT Tfp pilus assembl 91.7 0.22 4.8E-06 47.8 4.2 15 62-76 127-141 (353)
301 KOG0991|consensus 91.6 0.17 3.6E-06 46.6 3.2 16 61-76 49-64 (333)
302 COG4962 CpaF Flp pilus assembl 91.6 0.16 3.5E-06 49.7 3.3 35 42-76 154-189 (355)
303 TIGR03499 FlhF flagellar biosy 91.6 0.25 5.4E-06 48.2 4.6 17 60-76 194-210 (282)
304 KOG0741|consensus 91.3 0.85 1.8E-05 47.2 8.1 134 61-273 257-402 (744)
305 TIGR02639 ClpA ATP-dependent C 91.3 0.97 2.1E-05 50.5 9.5 16 61-76 204-219 (731)
306 PF06733 DEAD_2: DEAD_2; Inte 91.2 0.15 3.2E-06 45.8 2.5 44 176-219 114-159 (174)
307 TIGR02760 TraI_TIGR conjugativ 91.2 0.42 9E-06 58.8 6.9 32 45-76 1019-1052(1960)
308 KOG0734|consensus 91.1 0.43 9.3E-06 49.3 5.8 53 204-256 395-456 (752)
309 PRK13709 conjugal transfer nic 91.0 0.34 7.3E-06 58.2 5.7 32 45-76 967-1000(1747)
310 PRK07940 DNA polymerase III su 91.0 0.48 1E-05 48.5 6.2 51 204-259 116-167 (394)
311 cd01126 TraG_VirD4 The TraG/Tr 91.0 0.26 5.7E-06 50.5 4.4 47 62-153 1-47 (384)
312 KOG0336|consensus 91.0 0.43 9.4E-06 47.4 5.5 78 240-317 342-419 (629)
313 PTZ00293 thymidine kinase; Pro 90.9 0.46 1E-05 43.8 5.4 18 59-76 3-20 (211)
314 PF03354 Terminase_1: Phage Te 90.9 0.51 1.1E-05 49.9 6.5 58 61-157 23-80 (477)
315 TIGR02928 orc1/cdc6 family rep 90.8 0.52 1.1E-05 47.9 6.4 16 61-76 41-56 (365)
316 PRK14949 DNA polymerase III su 90.8 0.34 7.4E-06 53.9 5.2 16 204-219 118-133 (944)
317 PRK05703 flhF flagellar biosyn 90.8 0.53 1.2E-05 48.7 6.4 18 59-76 220-237 (424)
318 KOG0342|consensus 90.7 0.43 9.3E-06 48.6 5.4 77 241-317 205-282 (543)
319 PRK14960 DNA polymerase III su 90.7 0.6 1.3E-05 50.4 6.7 15 62-76 39-53 (702)
320 PRK06904 replicative DNA helic 90.7 1.2 2.6E-05 46.8 9.0 25 52-76 213-237 (472)
321 PRK14962 DNA polymerase III su 90.7 0.49 1.1E-05 49.7 6.1 15 62-76 38-52 (472)
322 PRK09112 DNA polymerase III su 90.7 0.61 1.3E-05 47.0 6.5 20 57-76 39-61 (351)
323 PHA03368 DNA packaging termina 90.7 1.3 2.7E-05 47.7 8.9 133 59-248 253-389 (738)
324 TIGR02012 tigrfam_recA protein 90.6 0.49 1.1E-05 46.7 5.7 20 57-76 52-71 (321)
325 KOG0328|consensus 90.6 0.47 1E-05 44.8 5.2 72 240-311 144-215 (400)
326 PRK14964 DNA polymerase III su 90.6 0.27 5.8E-06 51.5 4.0 16 61-76 36-51 (491)
327 PRK14974 cell division protein 90.5 0.57 1.2E-05 46.7 6.1 16 61-76 141-156 (336)
328 PRK13851 type IV secretion sys 90.4 0.21 4.6E-06 49.9 3.0 21 56-76 158-178 (344)
329 KOG0341|consensus 90.3 0.25 5.4E-06 48.6 3.2 74 240-313 301-374 (610)
330 TIGR00665 DnaB replicative DNA 90.1 1.2 2.5E-05 46.6 8.4 25 52-76 187-211 (434)
331 COG1219 ClpX ATP-dependent pro 90.1 0.14 3E-06 49.4 1.3 17 60-76 97-113 (408)
332 PF01443 Viral_helicase1: Vira 90.1 0.12 2.6E-06 48.8 0.9 14 63-76 1-14 (234)
333 PRK06067 flagellar accessory p 90.1 2.3 4.9E-05 40.2 9.7 18 59-76 24-41 (234)
334 PF02534 T4SS-DNA_transf: Type 90.1 0.36 7.8E-06 51.0 4.6 49 61-154 45-93 (469)
335 PF05127 Helicase_RecD: Helica 90.0 0.073 1.6E-06 47.6 -0.6 87 132-232 27-113 (177)
336 PRK13342 recombination factor 90.0 0.82 1.8E-05 47.3 7.1 16 61-76 37-52 (413)
337 PRK13897 type IV secretion sys 90.0 0.44 9.4E-06 51.4 5.1 57 61-166 159-215 (606)
338 PF05707 Zot: Zonular occluden 89.9 0.93 2E-05 41.5 6.6 54 205-258 79-135 (193)
339 KOG0338|consensus 89.8 0.4 8.7E-06 49.1 4.3 76 242-317 303-379 (691)
340 PRK14958 DNA polymerase III su 89.8 0.92 2E-05 48.1 7.3 17 204-220 118-134 (509)
341 PRK14952 DNA polymerase III su 89.8 0.89 1.9E-05 48.9 7.2 18 203-220 116-133 (584)
342 PRK05748 replicative DNA helic 89.7 1.7 3.7E-05 45.5 9.2 35 42-76 185-219 (448)
343 PF00448 SRP54: SRP54-type pro 89.6 0.32 6.9E-06 44.6 3.2 14 63-76 4-17 (196)
344 PRK06645 DNA polymerase III su 89.5 0.78 1.7E-05 48.5 6.4 15 62-76 45-59 (507)
345 KOG1807|consensus 89.5 0.74 1.6E-05 49.5 6.1 72 45-153 378-449 (1025)
346 PRK08506 replicative DNA helic 89.3 1.3 2.8E-05 46.6 7.9 35 42-76 174-208 (472)
347 PRK06964 DNA polymerase III su 89.3 1.1 2.3E-05 44.9 6.9 30 47-76 3-37 (342)
348 PRK07994 DNA polymerase III su 89.2 0.61 1.3E-05 50.6 5.5 17 204-220 118-134 (647)
349 PRK12323 DNA polymerase III su 89.2 0.58 1.3E-05 50.3 5.2 18 203-220 122-139 (700)
350 PRK04195 replication factor C 89.2 1.1 2.3E-05 47.6 7.2 17 60-76 39-55 (482)
351 COG0513 SrmB Superfamily II DN 89.2 0.7 1.5E-05 49.3 5.9 68 242-309 151-218 (513)
352 PRK09354 recA recombinase A; P 89.1 0.71 1.5E-05 46.1 5.5 18 59-76 59-76 (349)
353 PRK07004 replicative DNA helic 89.0 1.3 2.8E-05 46.5 7.6 35 42-76 195-229 (460)
354 PRK06871 DNA polymerase III su 89.0 0.99 2.2E-05 44.8 6.4 30 47-76 4-40 (325)
355 PF06745 KaiC: KaiC; InterPro 88.8 0.62 1.4E-05 43.7 4.7 20 57-76 16-35 (226)
356 PRK14961 DNA polymerase III su 88.8 1.5 3.2E-05 44.6 7.7 15 62-76 40-54 (363)
357 PRK05973 replicative DNA helic 88.7 0.73 1.6E-05 43.4 5.1 31 45-76 50-80 (237)
358 cd01128 rho_factor Transcripti 88.4 0.63 1.4E-05 44.3 4.5 21 56-76 12-32 (249)
359 PRK14959 DNA polymerase III su 88.4 0.46 9.9E-06 51.1 3.8 16 61-76 39-54 (624)
360 PRK14965 DNA polymerase III su 88.4 1.2 2.5E-05 48.3 7.0 17 203-219 117-133 (576)
361 PRK08840 replicative DNA helic 88.4 2.2 4.8E-05 44.7 8.9 35 42-76 199-233 (464)
362 PRK07993 DNA polymerase III su 88.3 1.6 3.5E-05 43.6 7.5 31 46-76 3-40 (334)
363 COG0593 DnaA ATPase involved i 88.2 1.1 2.4E-05 45.5 6.3 31 205-235 175-206 (408)
364 KOG0058|consensus 88.2 0.98 2.1E-05 48.6 6.0 36 202-237 619-654 (716)
365 PRK14950 DNA polymerase III su 88.0 1.4 3.1E-05 47.7 7.5 15 62-76 40-54 (585)
366 KOG0739|consensus 88.0 0.16 3.6E-06 48.4 0.2 66 61-138 167-232 (439)
367 KOG2228|consensus 88.0 3.3 7.2E-05 40.6 8.9 44 192-235 124-167 (408)
368 PRK10263 DNA translocase FtsK; 87.9 0.88 1.9E-05 52.5 5.8 41 207-248 1142-1182(1355)
369 PRK14723 flhF flagellar biosyn 87.9 1.4 3E-05 48.7 7.1 17 60-76 185-201 (767)
370 PRK13900 type IV secretion sys 87.9 0.34 7.3E-06 48.4 2.3 19 58-76 158-176 (332)
371 KOG0730|consensus 87.7 0.96 2.1E-05 48.1 5.6 55 19-76 428-484 (693)
372 PRK06090 DNA polymerase III su 87.7 1.5 3.3E-05 43.4 6.8 32 45-76 3-41 (319)
373 PRK12727 flagellar biosynthesi 87.5 0.93 2E-05 47.7 5.3 20 57-76 347-366 (559)
374 TIGR03877 thermo_KaiC_1 KaiC d 87.4 0.69 1.5E-05 43.9 4.1 19 58-76 19-37 (237)
375 PRK07764 DNA polymerase III su 87.2 0.84 1.8E-05 51.2 5.1 50 204-258 119-169 (824)
376 PRK09111 DNA polymerase III su 87.2 1.5 3.3E-05 47.3 7.0 15 62-76 48-62 (598)
377 PRK13850 type IV secretion sys 87.2 0.8 1.7E-05 50.1 4.9 48 61-153 140-187 (670)
378 TIGR00635 ruvB Holliday juncti 87.1 0.48 1E-05 46.8 3.0 16 61-76 31-46 (305)
379 TIGR02688 conserved hypothetic 87.1 1.3 2.8E-05 45.2 6.0 22 55-76 204-225 (449)
380 PRK13341 recombination factor 87.1 1.5 3.2E-05 48.6 6.9 16 61-76 53-68 (725)
381 PRK14948 DNA polymerase III su 87.0 1.8 3.9E-05 47.1 7.4 16 61-76 39-54 (620)
382 PRK13880 conjugal transfer cou 86.9 1.1 2.4E-05 48.9 5.8 47 61-152 176-222 (636)
383 PLN00020 ribulose bisphosphate 86.9 0.37 8.1E-06 48.1 2.0 16 61-76 149-164 (413)
384 cd01129 PulE-GspE PulE/GspE Th 86.9 0.7 1.5E-05 44.6 3.8 30 47-76 65-96 (264)
385 PRK07471 DNA polymerase III su 86.8 1.9 4.2E-05 43.6 7.1 15 62-76 43-57 (365)
386 PRK10689 transcription-repair 86.8 2.2 4.8E-05 49.9 8.4 79 131-217 809-891 (1147)
387 PRK08760 replicative DNA helic 86.8 2.4 5.1E-05 44.7 8.0 23 54-76 223-245 (476)
388 PRK08006 replicative DNA helic 86.7 3.5 7.5E-05 43.4 9.2 25 52-76 216-240 (471)
389 cd01130 VirB11-like_ATPase Typ 86.6 0.49 1.1E-05 43.0 2.5 32 45-76 9-41 (186)
390 PRK14963 DNA polymerase III su 86.5 1.1 2.5E-05 47.4 5.5 14 63-76 39-52 (504)
391 TIGR00767 rho transcription te 86.4 1.8 4E-05 43.9 6.6 20 57-76 165-184 (415)
392 cd01131 PilT Pilus retraction 86.4 0.65 1.4E-05 42.7 3.2 15 62-76 3-17 (198)
393 PRK09376 rho transcription ter 86.3 1.4 3E-05 44.6 5.6 18 59-76 168-185 (416)
394 TIGR00580 mfd transcription-re 86.3 2.3 5E-05 48.5 8.0 79 131-217 660-742 (926)
395 PRK07399 DNA polymerase III su 86.3 1.6 3.4E-05 43.3 6.0 63 191-260 111-174 (314)
396 PRK05595 replicative DNA helic 86.2 2.3 5.1E-05 44.4 7.6 35 42-76 183-217 (444)
397 PRK10436 hypothetical protein; 86.1 0.7 1.5E-05 48.3 3.6 30 47-76 203-234 (462)
398 COG1132 MdlB ABC-type multidru 86.1 1.3 2.8E-05 48.0 5.9 33 202-234 480-512 (567)
399 PF03237 Terminase_6: Terminas 86.0 3.4 7.4E-05 41.7 8.6 16 204-219 96-111 (384)
400 KOG0326|consensus 86.0 1 2.2E-05 43.5 4.2 75 242-316 204-278 (459)
401 KOG2004|consensus 86.0 2.6 5.7E-05 45.4 7.6 48 183-233 486-533 (906)
402 PRK00440 rfc replication facto 85.9 2.2 4.7E-05 42.3 7.0 15 62-76 40-54 (319)
403 PRK14721 flhF flagellar biosyn 85.6 1.1 2.3E-05 46.1 4.6 18 59-76 190-207 (420)
404 PRK14951 DNA polymerase III su 85.5 2.1 4.4E-05 46.4 6.8 17 204-220 123-139 (618)
405 COG1197 Mfd Transcription-repa 85.4 6.2 0.00014 45.2 10.6 151 50-218 732-886 (1139)
406 TIGR00678 holB DNA polymerase 85.3 1.8 4E-05 39.2 5.6 15 62-76 16-30 (188)
407 COG4178 ABC-type uncharacteriz 85.3 2.2 4.9E-05 45.5 6.8 32 201-232 529-560 (604)
408 PRK08691 DNA polymerase III su 85.2 1.3 2.7E-05 48.3 5.0 15 62-76 40-54 (709)
409 PRK05563 DNA polymerase III su 85.2 1.7 3.7E-05 46.7 6.1 17 203-219 117-133 (559)
410 TIGR00064 ftsY signal recognit 85.1 3.9 8.5E-05 39.6 8.0 16 61-76 73-88 (272)
411 PF02456 Adeno_IVa2: Adenoviru 85.0 0.52 1.1E-05 45.4 1.8 13 63-75 90-102 (369)
412 PRK13876 conjugal transfer cou 85.0 1.2 2.7E-05 48.6 5.0 48 61-153 145-192 (663)
413 PF00437 T2SE: Type II/IV secr 85.0 0.47 1E-05 45.9 1.6 19 58-76 125-143 (270)
414 COG3972 Superfamily I DNA and 84.9 1.5 3.2E-05 45.1 5.0 73 42-156 159-231 (660)
415 TIGR02533 type_II_gspE general 84.9 0.81 1.7E-05 48.3 3.4 30 47-76 227-258 (486)
416 PRK14955 DNA polymerase III su 84.8 2.9 6.3E-05 43.0 7.4 18 202-219 124-141 (397)
417 PF12775 AAA_7: P-loop contain 84.8 0.36 7.8E-06 46.8 0.7 20 57-76 30-49 (272)
418 PF13555 AAA_29: P-loop contai 84.8 0.37 8E-06 34.8 0.6 27 50-76 13-39 (62)
419 PF12846 AAA_10: AAA-like doma 84.7 0.92 2E-05 44.4 3.6 17 60-76 1-17 (304)
420 KOG0733|consensus 84.7 0.43 9.4E-06 50.1 1.2 57 17-76 503-561 (802)
421 PF10412 TrwB_AAD_bind: Type I 84.7 1 2.2E-05 46.2 3.9 51 56-149 11-61 (386)
422 PRK05896 DNA polymerase III su 84.7 1 2.2E-05 48.3 4.0 16 61-76 39-54 (605)
423 KOG0651|consensus 84.7 2.2 4.7E-05 41.4 5.7 42 207-248 227-278 (388)
424 PHA03372 DNA packaging termina 84.7 5.5 0.00012 42.4 9.2 125 59-248 201-336 (668)
425 PRK09165 replicative DNA helic 84.5 4.2 9E-05 43.2 8.6 22 55-76 212-233 (497)
426 PRK07133 DNA polymerase III su 84.5 2.6 5.5E-05 46.4 7.0 17 203-219 116-132 (725)
427 TIGR01420 pilT_fam pilus retra 84.5 1 2.3E-05 45.2 3.9 18 59-76 121-138 (343)
428 TIGR02640 gas_vesic_GvpN gas v 84.0 0.52 1.1E-05 45.5 1.4 25 52-76 13-37 (262)
429 TIGR02525 plasmid_TraJ plasmid 83.9 1.1 2.3E-05 45.5 3.7 18 59-76 148-165 (372)
430 TIGR01425 SRP54_euk signal rec 83.9 6.7 0.00015 40.5 9.4 15 62-76 102-116 (429)
431 TIGR00416 sms DNA repair prote 83.8 4.3 9.4E-05 42.5 8.2 18 59-76 93-110 (454)
432 TIGR00763 lon ATP-dependent pr 83.6 4.2 9E-05 45.9 8.6 17 60-76 347-363 (775)
433 KOG0333|consensus 83.6 1.1 2.4E-05 46.2 3.5 61 238-298 369-429 (673)
434 PRK14957 DNA polymerase III su 83.4 3 6.5E-05 44.5 6.9 17 203-219 117-133 (546)
435 PRK12726 flagellar biosynthesi 83.2 2 4.3E-05 43.4 5.1 18 59-76 205-222 (407)
436 TIGR02868 CydC thiol reductant 82.9 1.3 2.9E-05 47.5 4.1 32 202-233 485-516 (529)
437 PRK14873 primosome assembly pr 82.7 2.9 6.2E-05 45.9 6.6 80 372-452 185-265 (665)
438 KOG0745|consensus 82.7 0.61 1.3E-05 47.0 1.3 16 61-76 227-242 (564)
439 COG0630 VirB11 Type IV secreto 82.6 0.89 1.9E-05 45.0 2.5 33 44-76 126-159 (312)
440 PRK06731 flhF flagellar biosyn 82.6 15 0.00033 35.4 10.9 18 59-76 74-91 (270)
441 TIGR03878 thermo_KaiC_2 KaiC d 82.5 2.4 5.2E-05 40.8 5.4 20 57-76 33-52 (259)
442 KOG2028|consensus 82.5 2.2 4.8E-05 42.2 4.9 16 61-76 163-178 (554)
443 COG4626 Phage terminase-like p 82.4 4.5 9.7E-05 42.5 7.5 73 45-156 61-143 (546)
444 PRK14969 DNA polymerase III su 82.2 3.8 8.2E-05 43.8 7.2 17 203-219 117-133 (527)
445 PF03969 AFG1_ATPase: AFG1-lik 82.2 5.4 0.00012 40.3 7.9 17 60-76 62-78 (362)
446 PRK12724 flagellar biosynthesi 82.1 5.9 0.00013 40.6 8.1 16 61-76 224-239 (432)
447 cd01127 TrwB Bacterial conjuga 82.1 0.98 2.1E-05 46.7 2.7 23 54-76 36-58 (410)
448 PF13481 AAA_25: AAA domain; P 82.1 2.2 4.7E-05 38.8 4.7 67 53-156 24-94 (193)
449 PRK08451 DNA polymerase III su 82.0 1 2.2E-05 47.7 2.8 17 203-219 115-131 (535)
450 PRK14953 DNA polymerase III su 82.0 4.4 9.5E-05 42.8 7.5 32 466-497 409-440 (486)
451 PRK10917 ATP-dependent DNA hel 81.9 1.8 3.9E-05 47.9 4.8 78 373-450 308-389 (681)
452 PRK13822 conjugal transfer cou 81.9 2.1 4.5E-05 46.7 5.1 58 61-167 225-282 (641)
453 PRK00771 signal recognition pa 81.9 3.2 6.8E-05 43.1 6.2 16 61-76 96-111 (437)
454 TIGR02538 type_IV_pilB type IV 81.8 0.83 1.8E-05 49.3 2.1 30 47-76 301-332 (564)
455 TIGR02767 TraG-Ti Ti-type conj 81.7 2 4.3E-05 46.6 4.9 49 61-154 212-260 (623)
456 PRK05636 replicative DNA helic 81.6 4.5 9.7E-05 42.9 7.4 24 53-76 258-281 (505)
457 PRK06647 DNA polymerase III su 81.6 1.4 3.1E-05 47.3 3.7 17 203-219 117-133 (563)
458 KOG0732|consensus 81.4 0.79 1.7E-05 51.7 1.7 55 20-76 260-315 (1080)
459 PHA00350 putative assembly pro 81.4 3.6 7.8E-05 41.9 6.3 14 63-76 4-17 (399)
460 PF07728 AAA_5: AAA domain (dy 81.3 0.66 1.4E-05 39.7 0.9 15 62-76 1-15 (139)
461 PRK05580 primosome assembly pr 81.2 2.7 5.9E-05 46.5 5.9 79 373-452 188-266 (679)
462 PF01078 Mg_chelatase: Magnesi 80.9 0.77 1.7E-05 42.1 1.2 18 59-76 21-38 (206)
463 PRK08533 flagellar accessory p 80.9 2.2 4.7E-05 40.2 4.3 20 57-76 21-40 (230)
464 KOG0348|consensus 80.8 2.7 5.8E-05 43.6 5.0 56 240-295 261-317 (708)
465 PF13207 AAA_17: AAA domain; P 80.7 0.74 1.6E-05 38.2 1.0 14 63-76 2-15 (121)
466 KOG0343|consensus 80.6 2.6 5.5E-05 43.9 4.9 77 240-316 189-266 (758)
467 PRK10416 signal recognition pa 80.6 6.5 0.00014 39.0 7.7 17 60-76 114-130 (318)
468 PRK06321 replicative DNA helic 80.5 7.6 0.00017 40.8 8.6 25 52-76 218-242 (472)
469 PRK04328 hypothetical protein; 80.5 2.1 4.5E-05 40.9 4.1 19 58-76 21-39 (249)
470 PF00004 AAA: ATPase family as 80.4 0.76 1.7E-05 38.6 1.0 17 205-221 58-74 (132)
471 COG0466 Lon ATP-dependent Lon 80.4 5 0.00011 43.4 7.1 66 165-235 382-447 (782)
472 COG0467 RAD55 RecA-superfamily 80.4 1.8 3.8E-05 41.7 3.6 57 57-157 20-76 (260)
473 TIGR02788 VirB11 P-type DNA tr 80.2 1.3 2.8E-05 43.8 2.7 20 57-76 141-160 (308)
474 COG1222 RPT1 ATP-dependent 26S 80.0 1.6 3.6E-05 43.0 3.2 44 205-248 244-297 (406)
475 COG0514 RecQ Superfamily II DN 79.8 41 0.00088 36.2 13.6 44 244-292 110-160 (590)
476 COG0210 UvrD Superfamily I DNA 79.7 3.7 7.9E-05 45.4 6.3 71 45-156 2-72 (655)
477 PRK14954 DNA polymerase III su 79.7 2.3 5E-05 46.2 4.5 15 62-76 40-54 (620)
478 COG2909 MalT ATP-dependent tra 79.7 1.8 4E-05 47.5 3.7 32 204-235 128-159 (894)
479 PRK05800 cobU adenosylcobinami 79.7 3.8 8.2E-05 36.6 5.3 16 61-76 2-17 (170)
480 COG1198 PriA Primosomal protei 79.6 3.5 7.6E-05 45.4 5.9 79 371-450 241-319 (730)
481 PTZ00110 helicase; Provisional 79.5 3.4 7.5E-05 44.4 5.8 67 241-307 253-319 (545)
482 TIGR00595 priA primosomal prot 79.3 2.8 6.2E-05 44.5 5.0 79 373-452 23-101 (505)
483 TIGR03881 KaiC_arch_4 KaiC dom 79.3 2.7 5.8E-05 39.5 4.4 20 57-76 17-36 (229)
484 TIGR03819 heli_sec_ATPase heli 78.8 1.8 3.9E-05 43.4 3.2 31 46-76 163-194 (340)
485 TIGR02397 dnaX_nterm DNA polym 78.8 7.2 0.00016 39.3 7.7 15 62-76 38-52 (355)
486 KOG0335|consensus 78.7 2.1 4.5E-05 44.1 3.6 59 237-295 198-257 (482)
487 COG3267 ExeA Type II secretory 78.6 2.4 5.2E-05 39.9 3.7 21 56-76 46-67 (269)
488 TIGR02524 dot_icm_DotB Dot/Icm 78.5 0.98 2.1E-05 45.6 1.2 18 59-76 133-150 (358)
489 KOG0345|consensus 78.5 4.3 9.2E-05 41.5 5.6 62 244-305 134-197 (567)
490 PF00154 RecA: recA bacterial 78.4 3.6 7.9E-05 40.6 5.1 49 60-151 53-101 (322)
491 KOG1513|consensus 78.2 3.3 7.2E-05 45.0 5.0 172 44-262 263-470 (1300)
492 cd03115 SRP The signal recogni 78.2 6.1 0.00013 35.1 6.3 14 63-76 3-16 (173)
493 cd00544 CobU Adenosylcobinamid 78.1 4 8.7E-05 36.4 4.9 23 131-153 24-46 (169)
494 PF04665 Pox_A32: Poxvirus A32 78.0 2.1 4.6E-05 40.4 3.2 15 62-76 15-29 (241)
495 COG1223 Predicted ATPase (AAA+ 77.9 1 2.2E-05 42.4 1.0 16 61-76 152-167 (368)
496 PF08423 Rad51: Rad51; InterP 77.9 3.2 7E-05 39.8 4.5 15 62-76 40-54 (256)
497 KOG1133|consensus 77.9 10 0.00022 40.8 8.3 33 45-77 15-51 (821)
498 PF14516 AAA_35: AAA-like doma 77.9 12 0.00027 37.3 8.9 29 48-76 18-47 (331)
499 KOG1533|consensus 77.8 2 4.3E-05 39.8 2.8 13 63-75 5-17 (290)
500 KOG0055|consensus 77.7 1 2.2E-05 51.6 1.2 38 202-239 1141-1178(1228)
No 1
>KOG0331|consensus
Probab=100.00 E-value=1.2e-57 Score=456.73 Aligned_cols=385 Identities=48% Similarity=0.702 Sum_probs=319.2
Q ss_pred CcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccccc
Q psy10680 23 YINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSW 102 (537)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (537)
.+....++..+.+.| +..||..|||+|...||.+++|+|++..|.||||||++
T Consensus 92 ~f~~~~ls~~~~~~l-k~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLa-------------------------- 144 (519)
T KOG0331|consen 92 AFQELGLSEELMKAL-KEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLA-------------------------- 144 (519)
T ss_pred hhhcccccHHHHHHH-HhcCCCCCchhhhcccceeccCCceEEEeccCCcchhh--------------------------
Confidence 566777888888888 56999999999999999999999999999999999999
Q ss_pred ccCccccccchhhHhHhhhc-CCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccC
Q psy10680 103 WNNNVVDVKYILPALYHILK-MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRG 181 (537)
Q Consensus 103 ~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (537)
|++|++.++.. ......+.+|++|||+|||+|+.|+.+.+..+...++++..+++||.+...|...+.++
T Consensus 145 ---------y~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~g 215 (519)
T KOG0331|consen 145 ---------YLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERG 215 (519)
T ss_pred ---------hhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcC
Confidence 88889888887 55666677999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHHHhhhCC
Q psy10680 182 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESGT 260 (537)
Q Consensus 182 ~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~~~~ 260 (537)
.+|+|+||+++..+++.+...++++.++|+||||+|++++|.++++.|+..++.... +..++||| |.++..+.....
T Consensus 216 vdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r--Qtlm~saTwp~~v~~lA~~fl 293 (519)
T KOG0331|consen 216 VDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR--QTLMFSATWPKEVRQLAEDFL 293 (519)
T ss_pred CcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc--cEEEEeeeccHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999944221 44499999 877766555422
Q ss_pred cccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhc
Q psy10680 261 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLD 340 (537)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (537)
. +.......... .......-.++...... ..+...+...+.
T Consensus 294 ~--~~~~i~ig~~~-~~~a~~~i~qive~~~~--------------~~K~~~l~~lL~---------------------- 334 (519)
T KOG0331|consen 294 N--NPIQINVGNKK-ELKANHNIRQIVEVCDE--------------TAKLRKLGKLLE---------------------- 334 (519)
T ss_pred c--CceEEEecchh-hhhhhcchhhhhhhcCH--------------HHHHHHHHHHHH----------------------
Confidence 2 22222211111 00000000011111100 122222222221
Q ss_pred CCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHH
Q psy10680 341 MGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLR 420 (537)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 420 (537)
... ...+.+.||||+++..++++ +..+...++++..+||+.++.+|..+++
T Consensus 335 ---------------------------~~~-~~~~~KvIIFc~tkr~~~~l-~~~l~~~~~~a~~iHGd~sQ~eR~~~L~ 385 (519)
T KOG0331|consen 335 ---------------------------DIS-SDSEGKVIIFCETKRTCDEL-ARNLRRKGWPAVAIHGDKSQSERDWVLK 385 (519)
T ss_pred ---------------------------HHh-ccCCCcEEEEecchhhHHHH-HHHHHhcCcceeeecccccHHHHHHHHH
Confidence 011 22345677999999999999 9999999999999999999999999999
Q ss_pred HHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHHccc
Q psy10680 421 DFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQ 500 (537)
Q Consensus 421 ~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~~~~ 500 (537)
.|++|+..|||||+++++|+|+|++++||+||+|.+..+|+||+||+||+|+.|.++.|+...+......+.+.+++.++
T Consensus 386 ~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q 465 (519)
T KOG0331|consen 386 GFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQ 465 (519)
T ss_pred hcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhcC
Q psy10680 501 FVPDRLLLLAAKN 513 (537)
Q Consensus 501 ~~~~~l~~~~~~~ 513 (537)
.+|+.|.+++...
T Consensus 466 ~v~~~l~~~~~~~ 478 (519)
T KOG0331|consen 466 TVPPDLLEYARVS 478 (519)
T ss_pred CCChHHHHHHhhc
Confidence 9999999885443
No 2
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.6e-54 Score=455.96 Aligned_cols=387 Identities=44% Similarity=0.670 Sum_probs=312.2
Q ss_pred eecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccc
Q psy10680 19 FRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98 (537)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 98 (537)
.+...|..+.+++.+.+.|. ..||+.||++|.++||.+++|+|+|++||||||||++
T Consensus 127 ~p~~~f~~~~l~~~l~~~l~-~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTla---------------------- 183 (545)
T PTZ00110 127 KPVVSFEYTSFPDYILKSLK-NAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLA---------------------- 183 (545)
T ss_pred cccCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHH----------------------
Confidence 35667888899999999995 6999999999999999999999999999999999999
Q ss_pred ccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh
Q psy10680 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL 178 (537)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 178 (537)
|++|++.++...+......++.+|||+||++|+.|+.+.++.+....++++..++|+.+...+...+
T Consensus 184 -------------ylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l 250 (545)
T PTZ00110 184 -------------FLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL 250 (545)
T ss_pred -------------HHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH
Confidence 8888888877654444455889999999999999999999999888889999999999988888888
Q ss_pred ccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHh
Q psy10680 179 CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFL 256 (537)
Q Consensus 179 ~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l 256 (537)
..+++|+|+||++|.+++......+.++++||+||||++++++|...+..++..+++ ++.+ ++||| |.....+.
T Consensus 251 ~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l----~~SAT~p~~v~~l~ 326 (545)
T PTZ00110 251 RRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTL----MWSATWPKEVQSLA 326 (545)
T ss_pred HcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEE----EEEeCCCHHHHHHH
Confidence 889999999999999999988889999999999999999999999999999987754 4444 89999 65554443
Q ss_pred hhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhh
Q psy10680 257 ESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEAD 336 (537)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (537)
...... ..+... ..... .. . ...............+...+..
T Consensus 327 ~~l~~~-~~v~i~-vg~~~-l~-------------~-~~~i~q~~~~~~~~~k~~~L~~--------------------- 368 (545)
T PTZ00110 327 RDLCKE-EPVHVN-VGSLD-LT-------------A-CHNIKQEVFVVEEHEKRGKLKM--------------------- 368 (545)
T ss_pred HHHhcc-CCEEEE-ECCCc-cc-------------c-CCCeeEEEEEEechhHHHHHHH---------------------
Confidence 321100 000000 00000 00 0 0000000000000000111111
Q ss_pred hhhcCCChhHHHHHhhhccccceeechhhHHHHHHhH-hCceeEEEEeeccCccccccccccccccccccccCCCCHHHH
Q psy10680 337 RMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILV-AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNR 415 (537)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r 415 (537)
.+.... .+.+.+|||.+...++.+ ...|...++.+..+||+++..+|
T Consensus 369 -------------------------------ll~~~~~~~~k~LIF~~t~~~a~~l-~~~L~~~g~~~~~ihg~~~~~eR 416 (545)
T PTZ00110 369 -------------------------------LLQRIMRDGDKILIFVETKKGADFL-TKELRLDGWPALCIHGDKKQEER 416 (545)
T ss_pred -------------------------------HHHHhcccCCeEEEEecChHHHHHH-HHHHHHcCCcEEEEECCCcHHHH
Confidence 111111 345667999999999998 88888889999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHH
Q psy10680 416 DQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDIL 495 (537)
Q Consensus 416 ~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l 495 (537)
..+++.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|..|.+++|+++.+...+.++.+.+
T Consensus 417 ~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l 496 (545)
T PTZ00110 417 TWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVL 496 (545)
T ss_pred HHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccccccHHHHHHHhcCCC
Q psy10680 496 NEAHQFVPDRLLLLAAKNKP 515 (537)
Q Consensus 496 ~~~~~~~~~~l~~~~~~~~~ 515 (537)
.+..+.+|++|.+++...+.
T Consensus 497 ~~~~q~vp~~l~~~~~~~~~ 516 (545)
T PTZ00110 497 REAKQPVPPELEKLSNERSN 516 (545)
T ss_pred HHccCCCCHHHHHHHHHhcC
Confidence 99999999999999987775
No 3
>KOG0330|consensus
Probab=100.00 E-value=2.4e-54 Score=406.27 Aligned_cols=362 Identities=33% Similarity=0.502 Sum_probs=301.3
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
....|.++++++.+.+++. ..|++.||++|+++||.++.|+++|..|.||||||.+
T Consensus 59 ~~~sf~dLgv~~~L~~ac~-~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~a----------------------- 114 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQ-ELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGA----------------------- 114 (476)
T ss_pred hhcchhhcCcCHHHHHHHH-HhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhh-----------------------
Confidence 5578899999999999995 5889999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|++|++++++.+++ .+.++|++||++|+.|+...+..++...|+++..+.||.+...+...+.
T Consensus 115 ------------faLPIl~~LL~~p~-----~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~ 177 (476)
T KOG0330|consen 115 ------------FALPILQRLLQEPK-----LFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLS 177 (476)
T ss_pred ------------hHHHHHHHHHcCCC-----CceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhh
Confidence 88999999988664 5889999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEeCCchhHHHHh-cCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHh
Q psy10680 180 RGAEIVVATPGRLIDFLE-SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFL 256 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~-~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l 256 (537)
+.++|+|+||++|.+.+. .+-+.+..++++|+||||+++++.|...+..|+..+|. ++.. ++||| |..+....
T Consensus 178 kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~----LfsATMt~kv~kL~ 253 (476)
T KOG0330|consen 178 KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTF----LFSATMTKKVRKLQ 253 (476)
T ss_pred cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEE----EEEeecchhhHHHH
Confidence 999999999999999887 56778999999999999999999999999999999986 4455 99999 77665554
Q ss_pred hhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhh
Q psy10680 257 ESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEAD 336 (537)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (537)
......+..+.. ....+ .+..+... +.-+ ...++...++.+
T Consensus 254 rasl~~p~~v~~---s~ky~--------tv~~lkQ~----ylfv----~~k~K~~yLV~l-------------------- 294 (476)
T KOG0330|consen 254 RASLDNPVKVAV---SSKYQ--------TVDHLKQT----YLFV----PGKDKDTYLVYL-------------------- 294 (476)
T ss_pred hhccCCCeEEec---cchhc--------chHHhhhh----eEec----cccccchhHHHH--------------------
Confidence 332221111110 00000 00000000 0000 001111111111
Q ss_pred hhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHH
Q psy10680 337 RMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRD 416 (537)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~ 416 (537)
.....+...+|||++......+ +..|+..|+....+||.|+...|.
T Consensus 295 ---------------------------------l~e~~g~s~iVF~~t~~tt~~l-a~~L~~lg~~a~~LhGqmsq~~Rl 340 (476)
T KOG0330|consen 295 ---------------------------------LNELAGNSVIVFCNTCNTTRFL-ALLLRNLGFQAIPLHGQMSQSKRL 340 (476)
T ss_pred ---------------------------------HHhhcCCcEEEEEeccchHHHH-HHHHHhcCcceecccchhhHHHHH
Confidence 1133445667999999999999 999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHH
Q psy10680 417 QTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILN 496 (537)
Q Consensus 417 ~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~ 496 (537)
-.++.|++|..+||+||++.+||+|+|.+++|||||.|.+..+|+||+||+||+|..|.++.+++.-|.+.+++|...+.
T Consensus 341 g~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~g 420 (476)
T KOG0330|consen 341 GALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALG 420 (476)
T ss_pred HHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred Hcc
Q psy10680 497 EAH 499 (537)
Q Consensus 497 ~~~ 499 (537)
+..
T Consensus 421 kkl 423 (476)
T KOG0330|consen 421 KKL 423 (476)
T ss_pred cCC
Confidence 754
No 4
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.7e-52 Score=437.70 Aligned_cols=382 Identities=27% Similarity=0.429 Sum_probs=299.4
Q ss_pred ceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcc
Q psy10680 18 YFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSK 97 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~ 97 (537)
..+-..|...++++.+...|. ..||..||++|.++|+.+++|+|+++++|||||||++
T Consensus 117 p~pi~~f~~~~l~~~l~~~L~-~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTla--------------------- 174 (518)
T PLN00206 117 PPPILSFSSCGLPPKLLLNLE-TAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTAS--------------------- 174 (518)
T ss_pred CchhcCHHhCCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHH---------------------
Confidence 356778888999999999994 6899999999999999999999999999999999999
Q ss_pred cccccccCccccccchhhHhHhhhcCCC--CCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhH
Q psy10680 98 EESSWWNNNVVDVKYILPALYHILKMPK--LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQT 175 (537)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
|++|++.++..... .....++++|||+||++|+.|+.+.++.+....++++..++||.....+.
T Consensus 175 --------------yllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~ 240 (518)
T PLN00206 175 --------------FLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL 240 (518)
T ss_pred --------------HHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH
Confidence 77777776653221 11234789999999999999999999998888888999999998888777
Q ss_pred HHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHH
Q psy10680 176 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLID 254 (537)
Q Consensus 176 ~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~ 254 (537)
..+..+++|+|+||++|.+++......++++++||+||||++++++|...+..++..++..+.. ++||| +..+..
T Consensus 241 ~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l----~~SATl~~~v~~ 316 (518)
T PLN00206 241 YRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVL----LFSATVSPEVEK 316 (518)
T ss_pred HHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEE----EEEeeCCHHHHH
Confidence 7787889999999999999999888899999999999999999999999999999888766555 99999 554443
Q ss_pred HhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecch
Q psy10680 255 FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDE 334 (537)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (537)
+........ . .+........ ...............+...+...+.
T Consensus 317 l~~~~~~~~--~-~i~~~~~~~~----------------~~~v~q~~~~~~~~~k~~~l~~~l~---------------- 361 (518)
T PLN00206 317 FASSLAKDI--I-LISIGNPNRP----------------NKAVKQLAIWVETKQKKQKLFDILK---------------- 361 (518)
T ss_pred HHHHhCCCC--E-EEEeCCCCCC----------------CcceeEEEEeccchhHHHHHHHHHH----------------
Confidence 333211110 0 0000000000 0000000000000000001111110
Q ss_pred hhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccc-ccccccccccCCCCHH
Q psy10680 335 ADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVS-SSLYRAMGIHGDKSQW 413 (537)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~ 413 (537)
.......+.+|||.+...++.+ ...+. ..++++..+||+++..
T Consensus 362 -----------------------------------~~~~~~~~~iVFv~s~~~a~~l-~~~L~~~~g~~~~~~Hg~~~~~ 405 (518)
T PLN00206 362 -----------------------------------SKQHFKPPAVVFVSSRLGADLL-ANAITVVTGLKALSIHGEKSMK 405 (518)
T ss_pred -----------------------------------hhcccCCCEEEEcCCchhHHHH-HHHHhhccCcceEEeeCCCCHH
Confidence 0001123456999999998888 55554 4688899999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHH
Q psy10680 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLID 493 (537)
Q Consensus 414 ~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~ 493 (537)
+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|..|.+++|+++.+...+.++.+
T Consensus 406 eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~ 485 (518)
T PLN00206 406 ERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVA 485 (518)
T ss_pred HHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccccccHHHHHHH
Q psy10680 494 ILNEAHQFVPDRLLLLA 510 (537)
Q Consensus 494 ~l~~~~~~~~~~l~~~~ 510 (537)
.++..++.+|++|.+..
T Consensus 486 ~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 486 LLKSSGAAIPRELANSR 502 (518)
T ss_pred HHHHcCCCCCHHHHhCh
Confidence 99999999999998544
No 5
>KOG0336|consensus
Probab=100.00 E-value=1.7e-51 Score=388.32 Aligned_cols=387 Identities=40% Similarity=0.619 Sum_probs=313.8
Q ss_pred ccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCC
Q psy10680 16 LPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNT 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~ 95 (537)
.|..+..+-......+++...+ ++.||.+|||+|.+|||.+++|.|.+.+|.||+|||++
T Consensus 214 IPnP~ctFddAFq~~pevmenI-kK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~------------------- 273 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENI-KKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLA------------------- 273 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHH-HhccCCCCCcchhcccceeecCcceEEEEecCCCcCHH-------------------
Confidence 4555677777777888999999 56999999999999999999999999999999999999
Q ss_pred cccccccccCccccccchhhHhHhhhcCCCCC-CCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHh
Q psy10680 96 SKEESSWWNNNVVDVKYILPALYHILKMPKLE-EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ 174 (537)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
|++|.+-++..++... ...++.+|++.||++|+.|+.-+.+.+. .-++..++++|+.+..++
T Consensus 274 ----------------~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eq 336 (629)
T KOG0336|consen 274 ----------------FLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQ 336 (629)
T ss_pred ----------------HhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhH
Confidence 8888887777665433 3457899999999999999988887664 348889999999999999
Q ss_pred HHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhH
Q psy10680 175 TRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRL 252 (537)
Q Consensus 175 ~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~ 252 (537)
...+.++.+|+|+||.+|..+.....+++..+.++|+||||.|++++|.+++++++-.+++ ++.. +.||| |...
T Consensus 337 ie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtv----mTSATWP~~V 412 (629)
T KOG0336|consen 337 IEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTV----MTSATWPEGV 412 (629)
T ss_pred HHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceee----eecccCchHH
Confidence 9999999999999999999999999999999999999999999999999999999866655 6666 88999 8766
Q ss_pred HHHhhhCCccccccee--eeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeee
Q psy10680 253 IDFLESGTTNVNRITY--LVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYL 330 (537)
Q Consensus 253 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (537)
.....+-.-....+.. +.+..+..+. +.+ +-..-.++...+..++
T Consensus 413 rrLa~sY~Kep~~v~vGsLdL~a~~sVk-------------------Q~i-~v~~d~~k~~~~~~f~------------- 459 (629)
T KOG0336|consen 413 RRLAQSYLKEPMIVYVGSLDLVAVKSVK-------------------QNI-IVTTDSEKLEIVQFFV------------- 459 (629)
T ss_pred HHHHHHhhhCceEEEecccceeeeeeee-------------------eeE-EecccHHHHHHHHHHH-------------
Confidence 5544431111110100 0000000000 000 0000011111111111
Q ss_pred ecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCC
Q psy10680 331 VLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDK 410 (537)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 410 (537)
..-....+.||||..+..+..+ +..+.-.|+.+..+||+-
T Consensus 460 ---------------------------------------~~ms~ndKvIiFv~~K~~AD~L-SSd~~l~gi~~q~lHG~r 499 (629)
T KOG0336|consen 460 ---------------------------------------ANMSSNDKVIIFVSRKVMADHL-SSDFCLKGISSQSLHGNR 499 (629)
T ss_pred ---------------------------------------HhcCCCceEEEEEechhhhhhc-cchhhhcccchhhccCCh
Confidence 1122345666999999999888 888888899999999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHH
Q psy10680 411 SQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQD 490 (537)
Q Consensus 411 ~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~ 490 (537)
++.+|...++.|++|+.+|||||+++++|+|+|++++|++||+|.+..+|+||+||+||+|..|.++.|+.-.|-.-+..
T Consensus 500 ~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~e 579 (629)
T KOG0336|consen 500 EQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEE 579 (629)
T ss_pred hhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccccHHHHHHHhcCCCC
Q psy10680 491 LIDILNEAHQFVPDRLLLLAAKNKPI 516 (537)
Q Consensus 491 ~~~~l~~~~~~~~~~l~~~~~~~~~~ 516 (537)
++++|++.+|.+|+.|..+++..+..
T Consensus 580 LI~ILe~aeQevPdeL~~mAeryk~~ 605 (629)
T KOG0336|consen 580 LIQILERAEQEVPDELVRMAERYKLK 605 (629)
T ss_pred HHHHHHHhhhhCcHHHHHHHHHHHhh
Confidence 99999999999999999998776655
No 6
>KOG0328|consensus
Probab=100.00 E-value=5.1e-51 Score=368.10 Aligned_cols=370 Identities=29% Similarity=0.445 Sum_probs=302.5
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
....|+..++.+.+.++++ ..||..|+.+|+.|++.+++|+||+.++..|+|||.+
T Consensus 25 v~~~F~~Mgl~edlLrgiY-~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~----------------------- 80 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIY-AYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTAT----------------------- 80 (400)
T ss_pred cccchhhcCchHHHHHHHH-HhccCCchHHHhhhhhhhhcccceEEEecCCCCceEE-----------------------
Confidence 5668899999999999996 6999999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|.+.++..+....+ .-+++++.||++|+.|+...+..++..+++.+..+.||.+..+....+.
T Consensus 81 ------------~si~vlq~~d~~~r-----~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld 143 (400)
T KOG0328|consen 81 ------------FSISVLQSLDISVR-----ETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLD 143 (400)
T ss_pred ------------EEeeeeeecccccc-----eeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhc
Confidence 66666665543322 3569999999999999999999999999999999999999888888888
Q ss_pred cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHhh
Q psy10680 180 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFLE 257 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l~ 257 (537)
.+.++|.|||++++.+++.+.+.-..++++|+||+|.+++.+|..++..++.++++ .+.+ ++||| |..+.....
T Consensus 144 ~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv----~~SATlp~eilemt~ 219 (400)
T KOG0328|consen 144 YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVV----LVSATLPHEILEMTE 219 (400)
T ss_pred ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEE----EEeccCcHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999996 6666 99999 888777655
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
...... +..+ .+-++....|........-.+ ..+.+.+....
T Consensus 220 kfmtdp--vril--vkrdeltlEgIKqf~v~ve~E--------------ewKfdtLcdLY-------------------- 261 (400)
T KOG0328|consen 220 KFMTDP--VRIL--VKRDELTLEGIKQFFVAVEKE--------------EWKFDTLCDLY-------------------- 261 (400)
T ss_pred HhcCCc--eeEE--EecCCCchhhhhhheeeechh--------------hhhHhHHHHHh--------------------
Confidence 422221 2211 111111111100000000000 11222222221
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQ 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~ 417 (537)
..-.....+|||++++.+..+ ...+...++.+...||+|+.++|..
T Consensus 262 ---------------------------------d~LtItQavIFcnTk~kVdwL-tekm~~~nftVssmHGDm~qkERd~ 307 (400)
T KOG0328|consen 262 ---------------------------------DTLTITQAVIFCNTKRKVDWL-TEKMREANFTVSSMHGDMEQKERDK 307 (400)
T ss_pred ---------------------------------hhhehheEEEEecccchhhHH-HHHHHhhCceeeeccCCcchhHHHH
Confidence 111122334999999999999 8888888999999999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 418 TLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 418 ~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
++.+||+|+.+|||+|+.-++|+|+|.+++||+||.|.+...|+||+||.||.|.+|.++.|+..+|...+.++.+.+.-
T Consensus 308 im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst 387 (400)
T KOG0328|consen 308 IMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYST 387 (400)
T ss_pred HHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccccccHHH
Q psy10680 498 AHQFVPDRL 506 (537)
Q Consensus 498 ~~~~~~~~l 506 (537)
.-...|-.+
T Consensus 388 ~i~emp~nv 396 (400)
T KOG0328|consen 388 QIDEMPMNV 396 (400)
T ss_pred hcccccchh
Confidence 655555543
No 7
>KOG0335|consensus
Probab=100.00 E-value=7.1e-51 Score=401.00 Aligned_cols=390 Identities=39% Similarity=0.565 Sum_probs=308.0
Q ss_pred CcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccccc
Q psy10680 23 YINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSW 102 (537)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (537)
.+....+...+..++ +..|+..|||+|+.+||.+..|++.++||+||+|||.+
T Consensus 75 ~f~~~~l~~~l~~ni-~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~a-------------------------- 127 (482)
T KOG0335|consen 75 TFDEAILGEALAGNI-KRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAA-------------------------- 127 (482)
T ss_pred cccccchhHHHhhcc-ccccccCCCcceeeccceeecCCceEEEccCCCcchHH--------------------------
Confidence 556777888888887 56899999999999999999999999999999999999
Q ss_pred ccCccccccchhhHhHhhhcCCCCCC-----CCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH
Q psy10680 103 WNNNVVDVKYILPALYHILKMPKLEE-----GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD 177 (537)
Q Consensus 103 ~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
|++|++..++....... ...|.++|++||++|+.|++.+.+++....+++....||+.+...+...
T Consensus 128 ---------FLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~ 198 (482)
T KOG0335|consen 128 ---------FLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRF 198 (482)
T ss_pred ---------HHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhh
Confidence 77777777776643211 2358999999999999999999999999999999999999999999999
Q ss_pred hccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhh-CCChHHHHHHHhhccc-cccccCCceeecC-chhHHH
Q psy10680 178 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLID 254 (537)
Q Consensus 178 l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~-~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~ 254 (537)
+.++++|+|+||++|.++++.+.+.+.+++++|+||||.|++ .+|++.+++++..... ..-.+++.+|||| |..+..
T Consensus 199 ~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~ 278 (482)
T KOG0335|consen 199 IKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQR 278 (482)
T ss_pred hccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhh
Confidence 999999999999999999999999999999999999999999 9999999999987644 3333445599999 776654
Q ss_pred HhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecch
Q psy10680 255 FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDE 334 (537)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (537)
........ + ...+-..... ....+.........-.++...++..+.........
T Consensus 279 l~~~fl~~-~-yi~laV~rvg----------------~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~-------- 332 (482)
T KOG0335|consen 279 LAADFLKD-N-YIFLAVGRVG----------------STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSD-------- 332 (482)
T ss_pred hHHHHhhc-c-ceEEEEeeec----------------cccccceeEeeeecchhhHHHHHHHhhcccCCccc--------
Confidence 22211110 0 0000000000 00000000000011122233333333111100000
Q ss_pred hhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHH
Q psy10680 335 ADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414 (537)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 414 (537)
. .+...+..|||++.+.+..+ ...+...++++..+||.-++.+
T Consensus 333 -----------------------~-------------~~~~e~tlvFvEt~~~~d~l-~~~l~~~~~~~~sIhg~~tq~e 375 (482)
T KOG0335|consen 333 -----------------------G-------------EPKWEKTLVFVETKRGADEL-AAFLSSNGYPAKSIHGDRTQIE 375 (482)
T ss_pred -----------------------C-------------CcccceEEEEeeccchhhHH-HHHHhcCCCCceeecchhhhhH
Confidence 0 00011334999999999999 9999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHH
Q psy10680 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDI 494 (537)
Q Consensus 415 r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~ 494 (537)
|.+.++.|++|.+.+||||+++++|+|+|++++||+||+|.+..+|+||+||+||+|+.|.+..|++..+.....++.++
T Consensus 376 r~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~ 455 (482)
T KOG0335|consen 376 REQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEI 455 (482)
T ss_pred HHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccccccHHHHHHHh
Q psy10680 495 LNEAHQFVPDRLLLLAA 511 (537)
Q Consensus 495 l~~~~~~~~~~l~~~~~ 511 (537)
+.++++.+|+||.+++.
T Consensus 456 l~ea~q~vP~wl~~~~~ 472 (482)
T KOG0335|consen 456 LTEANQEVPQWLSELSR 472 (482)
T ss_pred HHHhcccCcHHHHhhhh
Confidence 99999999999998443
No 8
>KOG0333|consensus
Probab=100.00 E-value=6.8e-51 Score=395.72 Aligned_cols=380 Identities=36% Similarity=0.562 Sum_probs=300.8
Q ss_pred eecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccc
Q psy10680 19 FRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98 (537)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 98 (537)
.+-.+|+.++++..+.+.+ +.-||+.|+|+|+.|+|..++++|+|..|.||||||.+
T Consensus 242 nplrnwEE~~~P~e~l~~I-~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaa---------------------- 298 (673)
T KOG0333|consen 242 NPLRNWEESGFPLELLSVI-KKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAA---------------------- 298 (673)
T ss_pred ccccChhhcCCCHHHHHHH-HhcCCCCCchHHHhhccchhccCCeeeEEeccCCcccc----------------------
Confidence 4667899999999999977 56999999999999999999999999999999999999
Q ss_pred ccccccCccccccchhhHhHhhhcCCCCCC----CCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHh
Q psy10680 99 ESSWWNNNVVDVKYILPALYHILKMPKLEE----GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQ 174 (537)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
|++|++..+...++... -.||.+++++||++|+.|+..+-.++...++++++.+.||...+++
T Consensus 299 -------------f~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq 365 (673)
T KOG0333|consen 299 -------------FLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQ 365 (673)
T ss_pred -------------chhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhh
Confidence 55555555544442221 2489999999999999999999999999999999999999999999
Q ss_pred HHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccc-----------------
Q psy10680 175 TRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRD----------------- 237 (537)
Q Consensus 175 ~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~----------------- 237 (537)
-..+..+|+|+|+||.+|...|.+..+-++...+||+|||++|.+++|.+.+..++...|...
T Consensus 366 ~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~ 445 (673)
T KOG0333|consen 366 GFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKN 445 (673)
T ss_pred hhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhh
Confidence 889999999999999999999999888999999999999999999999999999998877521
Q ss_pred -----cccCCceeecC-chhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHH
Q psy10680 238 -----LCRGAEIVVAT-PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311 (537)
Q Consensus 238 -----~~~~~~~~saT-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (537)
..+++..++|| |+.+...+.. .+.- -.+..+...+.. .+.+.+.+.+ ...+.+.+
T Consensus 446 ~~~~k~yrqT~mftatm~p~verlar~-ylr~--pv~vtig~~gk~-----~~rveQ~v~m-----------~~ed~k~k 506 (673)
T KOG0333|consen 446 FSSSKKYRQTVMFTATMPPAVERLARS-YLRR--PVVVTIGSAGKP-----TPRVEQKVEM-----------VSEDEKRK 506 (673)
T ss_pred cccccceeEEEEEecCCChHHHHHHHH-HhhC--CeEEEeccCCCC-----ccchheEEEE-----------ecchHHHH
Confidence 22455577777 4444332222 1110 011111111100 0011111000 01122233
Q ss_pred HHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccc
Q psy10680 312 TILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTET 391 (537)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l 391 (537)
.+..++.+. .....|||++.++.++.+
T Consensus 507 kL~eil~~~-----------------------------------------------------~~ppiIIFvN~kk~~d~l 533 (673)
T KOG0333|consen 507 KLIEILESN-----------------------------------------------------FDPPIIIFVNTKKGADAL 533 (673)
T ss_pred HHHHHHHhC-----------------------------------------------------CCCCEEEEEechhhHHHH
Confidence 333333111 123344999999999999
Q ss_pred ccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCC
Q psy10680 392 KHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARST 471 (537)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~ 471 (537)
++.|.+.|++++.+||+-++++|...++.|++|..+|||||+++++|||+|++++||+||++++..+|.||+||+||+|
T Consensus 534 -Ak~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAG 612 (673)
T KOG0333|consen 534 -AKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAG 612 (673)
T ss_pred -HHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecCCCcchHHHHHHHHHH-ccccccHHHH
Q psy10680 472 KTGISYTLFTPLNGNKAQDLIDILNE-AHQFVPDRLL 507 (537)
Q Consensus 472 ~~g~~~~l~~~~~~~~~~~~~~~l~~-~~~~~~~~l~ 507 (537)
+.|.++.|+++.|..-+.++.+.+.+ .....|..|.
T Consensus 613 k~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela 649 (673)
T KOG0333|consen 613 KSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELA 649 (673)
T ss_pred cCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhc
Confidence 99999999999998888888888874 3444555554
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-50 Score=422.91 Aligned_cols=368 Identities=35% Similarity=0.527 Sum_probs=295.0
Q ss_pred CCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccc
Q psy10680 22 GYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESS 101 (537)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (537)
..|..+++++.+.+++. ..||..||++|..+||.++.|+|+++.|+||||||++
T Consensus 29 ~~F~~l~l~~~ll~~l~-~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~A------------------------- 82 (513)
T COG0513 29 PEFASLGLSPELLQALK-DLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAA------------------------- 82 (513)
T ss_pred CCHhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHH-------------------------
Confidence 67888999999999996 4999999999999999999999999999999999999
Q ss_pred cccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcchhHhHHHhcc
Q psy10680 102 WWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQTRDLCR 180 (537)
Q Consensus 102 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 180 (537)
|++|+++.+..... ....+ +||++||++|+.|+++.+..+.... ++++..++||.+...+...+..
T Consensus 83 ----------f~lP~l~~l~~~~~--~~~~~-aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~ 149 (513)
T COG0513 83 ----------FLLPLLQKILKSVE--RKYVS-ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR 149 (513)
T ss_pred ----------HHHHHHHHHhcccc--cCCCc-eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc
Confidence 78888888653211 01111 9999999999999999999999888 7999999999999999988888
Q ss_pred CCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHhhh
Q psy10680 181 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFLES 258 (537)
Q Consensus 181 ~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l~~ 258 (537)
+++|||+||+++++.+..+.+.++.+.++|+||||+|++.+|...+..++..++. ++.. ++||| |..+..+...
T Consensus 150 ~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtl----lfSAT~~~~i~~l~~~ 225 (513)
T COG0513 150 GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTL----LFSATMPDDIRELARR 225 (513)
T ss_pred CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEE----EEecCCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999987 4444 99999 7665555444
Q ss_pred CCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhh----hHHHHHHHHhhccccccceeeeecch
Q psy10680 259 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISE----RRDTILHFLESGTTNVNRITYLVLDE 334 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (537)
... ++.. +..... ........+........ +...+...+
T Consensus 226 ~l~--~p~~-i~v~~~-----------------~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll----------------- 268 (513)
T COG0513 226 YLN--DPVE-IEVSVE-----------------KLERTLKKIKQFYLEVESEEEKLELLLKLL----------------- 268 (513)
T ss_pred Hcc--CCcE-EEEccc-----------------cccccccCceEEEEEeCCHHHHHHHHHHHH-----------------
Confidence 221 1111 100000 00000000000000000 111111111
Q ss_pred hhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHH
Q psy10680 335 ADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414 (537)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 414 (537)
........+|||+++..+..+ +..+...|+++..+||+|++.+
T Consensus 269 ------------------------------------~~~~~~~~IVF~~tk~~~~~l-~~~l~~~g~~~~~lhG~l~q~~ 311 (513)
T COG0513 269 ------------------------------------KDEDEGRVIVFVRTKRLVEEL-AESLRKRGFKVAALHGDLPQEE 311 (513)
T ss_pred ------------------------------------hcCCCCeEEEEeCcHHHHHHH-HHHHHHCCCeEEEecCCCCHHH
Confidence 111112356999999999998 8999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCC-CcchHHHHHH
Q psy10680 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPL-NGNKAQDLID 493 (537)
Q Consensus 415 r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~-~~~~~~~~~~ 493 (537)
|.++++.|++|+.+|||||++++||||+|++++||+||.|.++..|+||+||+||+|..|.++.|+.+. +...+..+..
T Consensus 312 R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~ 391 (513)
T COG0513 312 RDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEK 391 (513)
T ss_pred HHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 8888888888
Q ss_pred HHHHc---cccccHHH
Q psy10680 494 ILNEA---HQFVPDRL 506 (537)
Q Consensus 494 ~l~~~---~~~~~~~l 506 (537)
.+.+. ...+|...
T Consensus 392 ~~~~~~~~~~~~~~~~ 407 (513)
T COG0513 392 RLERKLPSAVLLPLDE 407 (513)
T ss_pred HHhccccccccCCcch
Confidence 87664 23444443
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-50 Score=418.20 Aligned_cols=368 Identities=30% Similarity=0.438 Sum_probs=285.8
Q ss_pred cCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccc
Q psy10680 21 SGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (537)
...|..+++++.+.++|. .+||..||++|.++||.+++|+|++++||||||||++
T Consensus 7 ~~~f~~~~l~~~l~~~l~-~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla------------------------ 61 (423)
T PRK04837 7 EQKFSDFALHPQVVEALE-KKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMA------------------------ 61 (423)
T ss_pred CCCHhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHH------------------------
Confidence 357888999999999995 5999999999999999999999999999999999999
Q ss_pred ccccCccccccchhhHhHhhhcCCCC--CCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh
Q psy10680 101 SWWNNNVVDVKYILPALYHILKMPKL--EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL 178 (537)
Q Consensus 101 ~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 178 (537)
|++|++..+...+.. ....++++|||+||++|+.|+.+.+..+....++++..++|+.....+...+
T Consensus 62 -----------~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l 130 (423)
T PRK04837 62 -----------FLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL 130 (423)
T ss_pred -----------HHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh
Confidence 788888777654321 1124678999999999999999999999888899999999998887777777
Q ss_pred ccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHHHhh
Q psy10680 179 CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLE 257 (537)
Q Consensus 179 ~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~ 257 (537)
..+++|+|+||+++..++......+.++++||+||||++++.+|...+..++..++.... ....++||| +........
T Consensus 131 ~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~-~~~~l~SAT~~~~~~~~~~ 209 (423)
T PRK04837 131 ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQ-RLNMLFSATLSYRVRELAF 209 (423)
T ss_pred cCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccc-eeEEEEeccCCHHHHHHHH
Confidence 778999999999999999888889999999999999999999999999999888764211 112388999 544443332
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
...... . ......... . ........+...... ...
T Consensus 210 ~~~~~p--~-~i~v~~~~~-~------------------~~~i~~~~~~~~~~~-k~~---------------------- 244 (423)
T PRK04837 210 EHMNNP--E-YVEVEPEQK-T------------------GHRIKEELFYPSNEE-KMR---------------------- 244 (423)
T ss_pred HHCCCC--E-EEEEcCCCc-C------------------CCceeEEEEeCCHHH-HHH----------------------
Confidence 211100 0 000000000 0 000000000000000 000
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQ 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~ 417 (537)
.+..+.......+.+|||.+...++.+ ...|...|+++..+||+|+..+|..
T Consensus 245 ---------------------------~l~~ll~~~~~~~~lVF~~t~~~~~~l-~~~L~~~g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 245 ---------------------------LLQTLIEEEWPDRAIIFANTKHRCEEI-WGHLAADGHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred ---------------------------HHHHHHHhcCCCeEEEEECCHHHHHHH-HHHHHhCCCcEEEecCCCChhHHHH
Confidence 000001111234567999999999988 8888888999999999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 418 TLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 418 ~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
+++.|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+.+.+...+..+.+.+..
T Consensus 297 ~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~ 376 (423)
T PRK04837 297 ILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGH 376 (423)
T ss_pred HHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888887766654
Q ss_pred c
Q psy10680 498 A 498 (537)
Q Consensus 498 ~ 498 (537)
.
T Consensus 377 ~ 377 (423)
T PRK04837 377 S 377 (423)
T ss_pred C
Confidence 3
No 11
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.5e-49 Score=411.09 Aligned_cols=362 Identities=35% Similarity=0.513 Sum_probs=282.8
Q ss_pred CcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccccc
Q psy10680 23 YINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSW 102 (537)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (537)
+|..+++++.+...|. ..||..||++|.++|+.+++|+|+++++|||+|||++
T Consensus 2 ~f~~l~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla-------------------------- 54 (456)
T PRK10590 2 SFDSLGLSPDILRAVA-EQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAG-------------------------- 54 (456)
T ss_pred CHHHcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH--------------------------
Confidence 5778889999999995 5999999999999999999999999999999999999
Q ss_pred ccCccccccchhhHhHhhhcCCCC-CCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccC
Q psy10680 103 WNNNVVDVKYILPALYHILKMPKL-EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRG 181 (537)
Q Consensus 103 ~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (537)
|++|++..+...... ......++|||+||++|+.|+.+.++.+....++++..++|+.+...+...+...
T Consensus 55 ---------~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~ 125 (456)
T PRK10590 55 ---------FTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGG 125 (456)
T ss_pred ---------HHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCC
Confidence 777777776543221 1122457999999999999999999999888889999999999988887788888
Q ss_pred CcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHhhhC
Q psy10680 182 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFLESG 259 (537)
Q Consensus 182 ~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l~~~ 259 (537)
++|+|+||++|.+++......++++++||+||||+++++++...+..++..++. .+.. ++||| +..+..+....
T Consensus 126 ~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l----~~SAT~~~~~~~l~~~~ 201 (456)
T PRK10590 126 VDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNL----LFSATFSDDIKALAEKL 201 (456)
T ss_pred CcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEE----EEeCCCcHHHHHHHHHH
Confidence 999999999999999888888999999999999999999999999999887765 3344 89999 44444333221
Q ss_pred CcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhh
Q psy10680 260 TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRML 339 (537)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (537)
.... ......... ................ ...
T Consensus 202 ~~~~--~~i~~~~~~--------------------~~~~~i~~~~~~~~~~-~k~------------------------- 233 (456)
T PRK10590 202 LHNP--LEIEVARRN--------------------TASEQVTQHVHFVDKK-RKR------------------------- 233 (456)
T ss_pred cCCC--eEEEEeccc--------------------ccccceeEEEEEcCHH-HHH-------------------------
Confidence 1110 000000000 0000000000000000 000
Q ss_pred cCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHH
Q psy10680 340 DMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTL 419 (537)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~ 419 (537)
..+..+.........+|||.+...++.+ ...|...++.+..+||+|+..+|..++
T Consensus 234 ------------------------~~l~~l~~~~~~~~~lVF~~t~~~~~~l-~~~L~~~g~~~~~lhg~~~~~~R~~~l 288 (456)
T PRK10590 234 ------------------------ELLSQMIGKGNWQQVLVFTRTKHGANHL-AEQLNKDGIRSAAIHGNKSQGARTRAL 288 (456)
T ss_pred ------------------------HHHHHHHHcCCCCcEEEEcCcHHHHHHH-HHHHHHCCCCEEEEECCCCHHHHHHHH
Confidence 0000111111223456999999999988 888888899999999999999999999
Q ss_pred HHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 420 RDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 420 ~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
+.|++|+++|||||+++++|||+|++++||+||.|.+..+|+||+||+||.|..|.+++++...+...+..+...+..
T Consensus 289 ~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 289 ADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366 (456)
T ss_pred HHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999988888888777664
No 12
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.2e-49 Score=412.24 Aligned_cols=354 Identities=34% Similarity=0.493 Sum_probs=283.3
Q ss_pred CCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccc
Q psy10680 22 GYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESS 101 (537)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (537)
.+|..+++++.+.++|. ..||..||++|.+||+.++.|+|++++||||||||++
T Consensus 4 ~~f~~l~l~~~l~~~l~-~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a------------------------- 57 (460)
T PRK11776 4 TAFSTLPLPPALLANLN-ELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAA------------------------- 57 (460)
T ss_pred CChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHH-------------------------
Confidence 56888889999999995 6999999999999999999999999999999999999
Q ss_pred cccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcchhHhHHHhcc
Q psy10680 102 WWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQTRDLCR 180 (537)
Q Consensus 102 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 180 (537)
|.+|++..+.... .++++||++||++|+.|+.+.++.+.... ++++..++|+.+...+...+..
T Consensus 58 ----------~~lpil~~l~~~~-----~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~ 122 (460)
T PRK11776 58 ----------FGLGLLQKLDVKR-----FRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEH 122 (460)
T ss_pred ----------HHHHHHHHhhhcc-----CCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcC
Confidence 7888888774322 24579999999999999999999876544 6889999999998888888888
Q ss_pred CCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHhhh
Q psy10680 181 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFLES 258 (537)
Q Consensus 181 ~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l~~ 258 (537)
+++|+|+||+++..++..+...++++++||+||||++++.+|...+..++..++. ++.. ++||| |..+..+...
T Consensus 123 ~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~l----l~SAT~~~~~~~l~~~ 198 (460)
T PRK11776 123 GAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTL----LFSATYPEGIAAISQR 198 (460)
T ss_pred CCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEE----EEEecCcHHHHHHHHH
Confidence 9999999999999999988888999999999999999999999999999988876 4444 89999 5555444333
Q ss_pred CCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeeh---hhhHHHHHHHHhhccccccceeeeecchh
Q psy10680 259 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFI---SERRDTILHFLESGTTNVNRITYLVLDEA 335 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (537)
..... ..... ..... ........+. ..+...+.
T Consensus 199 ~~~~~--~~i~~-~~~~~--------------------~~~i~~~~~~~~~~~k~~~l~--------------------- 234 (460)
T PRK11776 199 FQRDP--VEVKV-ESTHD--------------------LPAIEQRFYEVSPDERLPALQ--------------------- 234 (460)
T ss_pred hcCCC--EEEEE-CcCCC--------------------CCCeeEEEEEeCcHHHHHHHH---------------------
Confidence 11110 00000 00000 0000000000 00000000
Q ss_pred hhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHH
Q psy10680 336 DRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNR 415 (537)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r 415 (537)
.+.........+|||.+...++.+ ...|...++.+..+||+|++.+|
T Consensus 235 --------------------------------~ll~~~~~~~~lVF~~t~~~~~~l-~~~L~~~~~~v~~~hg~~~~~eR 281 (460)
T PRK11776 235 --------------------------------RLLLHHQPESCVVFCNTKKECQEV-ADALNAQGFSALALHGDLEQRDR 281 (460)
T ss_pred --------------------------------HHHHhcCCCceEEEECCHHHHHHH-HHHHHhCCCcEEEEeCCCCHHHH
Confidence 011111233456999999999999 88888899999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHH
Q psy10680 416 DQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDIL 495 (537)
Q Consensus 416 ~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l 495 (537)
..+++.|++|+.+|||||+++++|+|+|++++||+||.|.+...|+||+||+||+|..|.+++++.+.+...+..+.+.+
T Consensus 282 ~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~ 361 (460)
T PRK11776 282 DQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYL 361 (460)
T ss_pred HHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888777777766
Q ss_pred HH
Q psy10680 496 NE 497 (537)
Q Consensus 496 ~~ 497 (537)
..
T Consensus 362 ~~ 363 (460)
T PRK11776 362 GR 363 (460)
T ss_pred CC
Confidence 54
No 13
>KOG0339|consensus
Probab=100.00 E-value=2.5e-49 Score=382.86 Aligned_cols=395 Identities=39% Similarity=0.590 Sum_probs=326.9
Q ss_pred eeeecccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhcccccc
Q psy10680 11 SLEARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQC 90 (537)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~ 90 (537)
.+.+..|..+-.+++..+....+..+.. +..|.+||++|.+++|..+.|++|+-.|.||||||-+
T Consensus 212 rv~g~s~~rpvtsfeh~gfDkqLm~air-k~Ey~kptpiq~qalptalsgrdvigIAktgSgktaA-------------- 276 (731)
T KOG0339|consen 212 RVSGSSPPRPVTSFEHFGFDKQLMTAIR-KSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAA-------------- 276 (731)
T ss_pred eeccCCCCCCcchhhhcCchHHHHHHHh-hhhcccCCcccccccccccccccchheeeccCcchhH--------------
Confidence 3444456667788999999999998884 5889999999999999999999999999999999999
Q ss_pred CCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcc
Q psy10680 91 GRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTS 170 (537)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 170 (537)
|+.|++.+++.++....+.||..||+|||++|+.|+..++++|++..+++++++|||.+
T Consensus 277 ---------------------fi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgs 335 (731)
T KOG0339|consen 277 ---------------------FIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGS 335 (731)
T ss_pred ---------------------HHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCc
Confidence 99999999999998888899999999999999999999999999999999999999999
Q ss_pred hhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-
Q psy10680 171 KMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT- 248 (537)
Q Consensus 171 ~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT- 248 (537)
.++|...+..++.||||||++|..++.-+..++.+++++||||+++|++.+|..+++.|.+.+++ ++.+ ++|||
T Consensus 336 k~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtl----lFsaTf 411 (731)
T KOG0339|consen 336 KWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTL----LFSATF 411 (731)
T ss_pred HHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEE----Eeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999998877 5555 99999
Q ss_pred chhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhcccccccee
Q psy10680 249 PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRIT 328 (537)
Q Consensus 249 p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (537)
+..+...........-++..-...++.+ .+.+ ..+........+.++
T Consensus 412 ~~kIe~lard~L~dpVrvVqg~vgean~--------dITQ--------------~V~V~~s~~~Kl~wl----------- 458 (731)
T KOG0339|consen 412 KKKIEKLARDILSDPVRVVQGEVGEANE--------DITQ--------------TVSVCPSEEKKLNWL----------- 458 (731)
T ss_pred hHHHHHHHHHHhcCCeeEEEeehhcccc--------chhh--------------eeeeccCcHHHHHHH-----------
Confidence 5555443333211111111111111000 0000 011111111111111
Q ss_pred eeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccC
Q psy10680 329 YLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHG 408 (537)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~ 408 (537)
+..+-......+.++|+.....++++ +..|.-.++++..+||
T Consensus 459 -------------------------------------~~~L~~f~S~gkvlifVTKk~~~e~i-~a~Lklk~~~v~llhg 500 (731)
T KOG0339|consen 459 -------------------------------------LRHLVEFSSEGKVLIFVTKKADAEEI-AANLKLKGFNVSLLHG 500 (731)
T ss_pred -------------------------------------HHHhhhhccCCcEEEEEeccCCHHHH-HHHhccccceeeeecC
Confidence 11111112223455888888888888 8888899999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchH
Q psy10680 409 DKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKA 488 (537)
Q Consensus 409 ~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~ 488 (537)
+|++.+|.+++-.|+++...|+|+|+...+|+|+|++..||+||+-.++..|.||+||+||+|.+|.++.++++.|....
T Consensus 501 dkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fA 580 (731)
T KOG0339|consen 501 DKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFA 580 (731)
T ss_pred chhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccccccHHHHHHHhcCCCC
Q psy10680 489 QDLIDILNEAHQFVPDRLLLLAAKNKPI 516 (537)
Q Consensus 489 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 516 (537)
..+.+.|+..+|++|+.|.++++..-..
T Consensus 581 G~LVnnLe~agQnVP~~l~dlamk~s~f 608 (731)
T KOG0339|consen 581 GHLVNNLEGAGQNVPDELMDLAMKSSWF 608 (731)
T ss_pred hHHHHHHhhccccCChHHHHHHhhhhhh
Confidence 9999999999999999999999876433
No 14
>KOG0340|consensus
Probab=100.00 E-value=7.6e-49 Score=364.97 Aligned_cols=385 Identities=31% Similarity=0.407 Sum_probs=307.1
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
+...|..+++++|+.+.+ +.+|++.|||+|..+||.++.|+|+|-+|.||||||.+
T Consensus 5 t~~~F~~LGl~~Wlve~l-~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~A----------------------- 60 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQL-KALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAA----------------------- 60 (442)
T ss_pred ccCchhhcCccHHHHHHH-HHhcCCCCCchHhhhhHHHhcccccccccccCCCcchh-----------------------
Confidence 456788999999999999 57999999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|.+|+++.+...+. |-.++|+.||++|+-|+.+.|..++...++++.+++||++.-.+...+.
T Consensus 61 ------------FaLPil~rLsedP~-----giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~ 123 (442)
T KOG0340|consen 61 ------------FALPILNRLSEDPY-----GIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILS 123 (442)
T ss_pred ------------hhHHHHHhhccCCC-----cceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcc
Confidence 78888888776653 7789999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEeCCchhHHHHhcC----cccccceeEEEecchhhhhhCCChHHHHHHHhhcccc-ccccCCceeecCchhHHH
Q psy10680 180 RGAEIVVATPGRLIDFLESG----TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTR-DLCRGAEIVVATPGRLID 254 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~----~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~-~~~~~~~~~saTp~~~~~ 254 (537)
.++++||+||+++...+... ...++++.++|+|||+.+++..|..++..+...+|.. +.. ++|||-.....
T Consensus 124 ~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtL----lfSATitd~i~ 199 (442)
T KOG0340|consen 124 DRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTL----LFSATITDTIK 199 (442)
T ss_pred cCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCccceE----EEEeehhhHHH
Confidence 99999999999999887654 3367999999999999999999999999999999884 444 99999655555
Q ss_pred HhhhCCcccccceeeec-cchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecc
Q psy10680 255 FLESGTTNVNRITYLVL-DEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLD 333 (537)
Q Consensus 255 ~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (537)
.+.......+....+.. +... ....+... +-..+ ...+..
T Consensus 200 ql~~~~i~k~~a~~~e~~~~vs---------tvetL~q~----yI~~~----~~vkda---------------------- 240 (442)
T KOG0340|consen 200 QLFGCPITKSIAFELEVIDGVS---------TVETLYQG----YILVS----IDVKDA---------------------- 240 (442)
T ss_pred HhhcCCcccccceEEeccCCCC---------chhhhhhh----eeecc----hhhhHH----------------------
Confidence 44443433321111110 0000 00000000 00000 000001
Q ss_pred hhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhH--hCceeEEEEeeccCccccccccccccccccccccCCCC
Q psy10680 334 EADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILV--AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKS 411 (537)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 411 (537)
+++..+.... .....+||+++...++.+ ...|....+++..+|+.|+
T Consensus 241 ------------------------------YLv~~Lr~~~~~~~~simIFvnttr~cQ~l-~~~l~~le~r~~~lHs~m~ 289 (442)
T KOG0340|consen 241 ------------------------------YLVHLLRDFENKENGSIMIFVNTTRECQLL-SMTLKNLEVRVVSLHSQMP 289 (442)
T ss_pred ------------------------------HHHHHHhhhhhccCceEEEEeehhHHHHHH-HHHHhhhceeeeehhhcch
Confidence 1111111122 244556999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHH
Q psy10680 412 QWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDL 491 (537)
Q Consensus 412 ~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~ 491 (537)
+.+|...+-+|+++..+|||||+++++|+|+|.+.+||+||.|++|.+|+||.||++|+|..|.++.++++.|.+.++.+
T Consensus 290 Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~ai 369 (442)
T KOG0340|consen 290 QKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAI 369 (442)
T ss_pred HHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccccc----------------cHHHHHHHhcCCCCChh
Q psy10680 492 IDILNEAHQFV----------------PDRLLLLAAKNKPITTR 519 (537)
Q Consensus 492 ~~~l~~~~~~~----------------~~~l~~~~~~~~~~~~~ 519 (537)
.+..++.-... .++-.++++.++...++
T Consensus 370 E~~igkKl~e~~~~~~~~~~~~t~V~~akrea~m~m~~~~F~er 413 (442)
T KOG0340|consen 370 EEEIGKKLTEYNKVQRTVELYVTQVTVAKREAEMKMDNNGFGER 413 (442)
T ss_pred HHHHhcccccccccchhhheehhhHHHHHHHHHHHhhhcchhHH
Confidence 88887643222 33444566666666553
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-48 Score=411.38 Aligned_cols=366 Identities=31% Similarity=0.499 Sum_probs=283.3
Q ss_pred CCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccc
Q psy10680 22 GYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESS 101 (537)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (537)
..|..+.+++.+.++|. ..||..||++|.++||.+++|+|+++++|||||||++
T Consensus 9 ~~f~~l~l~~~l~~~L~-~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTla------------------------- 62 (572)
T PRK04537 9 LTFSSFDLHPALLAGLE-SAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLA------------------------- 62 (572)
T ss_pred CChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHH-------------------------
Confidence 46888889999999995 6999999999999999999999999999999999999
Q ss_pred cccCccccccchhhHhHhhhcCCCC--CCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 102 WWNNNVVDVKYILPALYHILKMPKL--EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 102 ~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|++|++..+...... ....++++|||+||++|+.|+++.+..+....++++..++|+.....+...+.
T Consensus 63 ----------fllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~ 132 (572)
T PRK04537 63 ----------FLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ 132 (572)
T ss_pred ----------HHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh
Confidence 788888777643221 11225789999999999999999999999888999999999998888777777
Q ss_pred cCCcEEEeCCchhHHHHhcC-cccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHHHhh
Q psy10680 180 RGAEIVVATPGRLIDFLESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLE 257 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~-~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~ 257 (537)
.+++|+|+||++|.+.+... .+.+..+++|||||||++++.+|...+..++..++... ..+..++||| +..+.....
T Consensus 133 ~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~-~~q~ll~SATl~~~v~~l~~ 211 (572)
T PRK04537 133 QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERG-TRQTLLFSATLSHRVLELAY 211 (572)
T ss_pred CCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhccccc-CceEEEEeCCccHHHHHHHH
Confidence 78999999999999988764 46788999999999999999999999999988877421 1233489999 554444332
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
...... ..... .. .... ................+
T Consensus 212 ~~l~~p--~~i~v-~~-~~~~------------------~~~i~q~~~~~~~~~k~------------------------ 245 (572)
T PRK04537 212 EHMNEP--EKLVV-ET-ETIT------------------AARVRQRIYFPADEEKQ------------------------ 245 (572)
T ss_pred HHhcCC--cEEEe-cc-cccc------------------ccceeEEEEecCHHHHH------------------------
Confidence 211000 00000 00 0000 00000000000000000
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQ 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~ 417 (537)
..+..+.....+.+.+|||++...++.+ ...|...++.+..+||+|+..+|..
T Consensus 246 --------------------------~~L~~ll~~~~~~k~LVF~nt~~~ae~l-~~~L~~~g~~v~~lhg~l~~~eR~~ 298 (572)
T PRK04537 246 --------------------------TLLLGLLSRSEGARTMVFVNTKAFVERV-ARTLERHGYRVGVLSGDVPQKKRES 298 (572)
T ss_pred --------------------------HHHHHHHhcccCCcEEEEeCCHHHHHHH-HHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 0001111122345667999999999998 8888888999999999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 418 TLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 418 ~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
+++.|++|+++|||||+++++|||+|++++||+||.|.+..+|+||+||+||.|..|.+++|+.+.+...+.++.+.+..
T Consensus 299 il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 299 LLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred HHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777777666554
No 16
>KOG0338|consensus
Probab=100.00 E-value=1.5e-48 Score=378.05 Aligned_cols=363 Identities=33% Similarity=0.444 Sum_probs=291.3
Q ss_pred cCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccc
Q psy10680 21 SGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (537)
..+|..+.+|..+.+++. ..||..|||+|...||..+-|+|+..||.||||||.+
T Consensus 180 ~~sF~~mNLSRPlLka~~-~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAA------------------------ 234 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACS-TLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAA------------------------ 234 (691)
T ss_pred hhhHHhcccchHHHHHHH-hcCCCCCCchhhhcccHHhhcchhhheecccCCchhh------------------------
Confidence 568899999999999995 7999999999999999999999999999999999999
Q ss_pred ccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhcc
Q psy10680 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCR 180 (537)
Q Consensus 101 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 180 (537)
|.+|+|.+++-.+.. ...-++||||||++|+.|+.+..+++....++.++.+.||.+...|...++.
T Consensus 235 -----------F~lPiLERLlYrPk~--~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs 301 (691)
T KOG0338|consen 235 -----------FALPILERLLYRPKK--VAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS 301 (691)
T ss_pred -----------hHHHHHHHHhcCccc--CcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh
Confidence 888888888866543 2245799999999999999999999999889999999999999999999999
Q ss_pred CCcEEEeCCchhHHHHhc-CcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHhh
Q psy10680 181 GAEIVVATPGRLIDFLES-GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFLE 257 (537)
Q Consensus 181 ~~~Ivv~Tp~~l~~~l~~-~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l~ 257 (537)
.+||||+||++|.+-+.+ ..+.++++.++|+||||+|++.+|...+..|+..++. ++.. ++||| ...+.+...
T Consensus 302 ~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTm----LFSATMteeVkdL~s 377 (691)
T KOG0338|consen 302 RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTM----LFSATMTEEVKDLAS 377 (691)
T ss_pred CCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccce----eehhhhHHHHHHHHH
Confidence 999999999999987754 5678999999999999999999999999999999887 5555 99999 444433322
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
- .+. .++...+-....... .+. ..++...
T Consensus 378 l-SL~-kPvrifvd~~~~~a~------~Lt--------------------------QEFiRIR----------------- 406 (691)
T KOG0338|consen 378 L-SLN-KPVRIFVDPNKDTAP------KLT--------------------------QEFIRIR----------------- 406 (691)
T ss_pred h-hcC-CCeEEEeCCccccch------hhh--------------------------HHHheec-----------------
Confidence 1 111 112211111111000 000 0011000
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQ 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~ 417 (537)
.+.-..-...+..+...--....+||+.++..+..+ .-++.-.|+++..+||.+++.+|..
T Consensus 407 ------------------~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl-~IllGLlgl~agElHGsLtQ~QRle 467 (691)
T KOG0338|consen 407 ------------------PKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRL-RILLGLLGLKAGELHGSLTQEQRLE 467 (691)
T ss_pred ------------------cccccccHHHHHHHHHHhcccceEEEEehHHHHHHH-HHHHHHhhchhhhhcccccHHHHHH
Confidence 000000011111111111244556999999999998 8888889999999999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHH
Q psy10680 418 TLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDIL 495 (537)
Q Consensus 418 ~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l 495 (537)
.++.|+.+++++||||+++++|+||+.+..||||.+|.++..|+||+||++|+|..|.++.|+.+++...+..+....
T Consensus 468 sL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 468 SLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred HHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999888888777764
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=7.7e-48 Score=400.29 Aligned_cols=363 Identities=30% Similarity=0.491 Sum_probs=282.5
Q ss_pred CcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccccc
Q psy10680 23 YINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSW 102 (537)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (537)
.|+.+.+++.+.+.|. ..||..|+++|.++|+.++.|+|++++||||+|||++
T Consensus 2 ~f~~l~l~~~l~~~l~-~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~-------------------------- 54 (434)
T PRK11192 2 TFSELELDESLLEALQ-DKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAA-------------------------- 54 (434)
T ss_pred CHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHH--------------------------
Confidence 4778889999999995 5999999999999999999999999999999999999
Q ss_pred ccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCC
Q psy10680 103 WNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGA 182 (537)
Q Consensus 103 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (537)
|++|++..+...+.. ...++++||++||++|+.|+.+.+..+....++++..++|+.....+...+..++
T Consensus 55 ---------~~lp~l~~l~~~~~~-~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~ 124 (434)
T PRK11192 55 ---------FLLPALQHLLDFPRR-KSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQ 124 (434)
T ss_pred ---------HHHHHHHHHhhcccc-CCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCC
Confidence 788888777654321 2235689999999999999999999998888999999999998888877777789
Q ss_pred cEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCch-h-HHHHhhhCC
Q psy10680 183 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPG-R-LIDFLESGT 260 (537)
Q Consensus 183 ~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~-~-~~~~l~~~~ 260 (537)
+|+|+||++|...+....+.+.++++|||||||++++++|...+..+....+.. .+..++|||+. . +..+.....
T Consensus 125 ~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~---~q~~~~SAT~~~~~~~~~~~~~~ 201 (434)
T PRK11192 125 DIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWR---KQTLLFSATLEGDAVQDFAERLL 201 (434)
T ss_pred CEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccc---cEEEEEEeecCHHHHHHHHHHHc
Confidence 999999999999998888889999999999999999999999998888766542 23348999942 2 333222211
Q ss_pred cccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhc
Q psy10680 261 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLD 340 (537)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (537)
.. .... ...... ....................
T Consensus 202 ~~--~~~i-~~~~~~-------------------~~~~~i~~~~~~~~~~~~k~-------------------------- 233 (434)
T PRK11192 202 ND--PVEV-EAEPSR-------------------RERKKIHQWYYRADDLEHKT-------------------------- 233 (434)
T ss_pred cC--CEEE-EecCCc-------------------ccccCceEEEEEeCCHHHHH--------------------------
Confidence 00 0000 000000 00000000000000000000
Q ss_pred CCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHH
Q psy10680 341 MGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLR 420 (537)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 420 (537)
..+..+.......+.+|||.+...+..+ +..|...++.+..+||+|+..+|..+++
T Consensus 234 -----------------------~~l~~l~~~~~~~~~lVF~~s~~~~~~l-~~~L~~~~~~~~~l~g~~~~~~R~~~l~ 289 (434)
T PRK11192 234 -----------------------ALLCHLLKQPEVTRSIVFVRTRERVHEL-AGWLRKAGINCCYLEGEMVQAKRNEAIK 289 (434)
T ss_pred -----------------------HHHHHHHhcCCCCeEEEEeCChHHHHHH-HHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 0011111112335567999999999999 8888888999999999999999999999
Q ss_pred HHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 421 DFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 421 ~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
.|++|+++|||||+++++|+|+|++++||+||.|.+...|+||+||+||+|..|.++++++..|...+..+.+.+.+
T Consensus 290 ~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 290 RLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred HHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888776654
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.4e-48 Score=412.73 Aligned_cols=355 Identities=34% Similarity=0.521 Sum_probs=280.7
Q ss_pred cCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccc
Q psy10680 21 SGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (537)
...|..+.+++.+.++|. .+||..|+++|.++|+.++.|+++|++||||+|||++
T Consensus 5 ~~~f~~l~L~~~ll~al~-~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~a------------------------ 59 (629)
T PRK11634 5 ETTFADLGLKAPILEALN-DLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA------------------------ 59 (629)
T ss_pred cCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHH------------------------
Confidence 345788889999999995 5999999999999999999999999999999999999
Q ss_pred ccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcchhHhHHHhc
Q psy10680 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 101 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|.+|++..+.... .++++|||+||++|+.|+++.++.+.... ++.+..++|+.+...+...+.
T Consensus 60 -----------f~lpll~~l~~~~-----~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~ 123 (629)
T PRK11634 60 -----------FSLPLLHNLDPEL-----KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR 123 (629)
T ss_pred -----------HHHHHHHHhhhcc-----CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc
Confidence 7888887764322 25689999999999999999999887654 788999999998888888888
Q ss_pred cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHhh
Q psy10680 180 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFLE 257 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l~ 257 (537)
.+++|+|+||+++...+......++++++||+||||++++.+|...+..++..++. .+.. ++||| |..+.....
T Consensus 124 ~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~l----lfSAT~p~~i~~i~~ 199 (629)
T PRK11634 124 QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA----LFSATMPEAIRRITR 199 (629)
T ss_pred CCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEE----EEEccCChhHHHHHH
Confidence 88999999999999999888889999999999999999999999999999988875 4444 99999 655443332
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceee---hhhhHHHHHHHHhhccccccceeeeecch
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLF---ISERRDTILHFLESGTTNVNRITYLVLDE 334 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (537)
...... ... ..... ............ ...+...+..
T Consensus 200 ~~l~~~--~~i-~i~~~-------------------~~~~~~i~q~~~~v~~~~k~~~L~~------------------- 238 (629)
T PRK11634 200 RFMKEP--QEV-RIQSS-------------------VTTRPDISQSYWTVWGMRKNEALVR------------------- 238 (629)
T ss_pred HHcCCC--eEE-EccCc-------------------cccCCceEEEEEEechhhHHHHHHH-------------------
Confidence 211000 000 00000 000000000000 0000011111
Q ss_pred hhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHH
Q psy10680 335 ADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414 (537)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 414 (537)
+.........+|||.++..+..+ ...|...++.+..+||+|++.+
T Consensus 239 ----------------------------------~L~~~~~~~~IVF~~tk~~a~~l-~~~L~~~g~~~~~lhgd~~q~~ 283 (629)
T PRK11634 239 ----------------------------------FLEAEDFDAAIIFVRTKNATLEV-AEALERNGYNSAALNGDMNQAL 283 (629)
T ss_pred ----------------------------------HHHhcCCCCEEEEeccHHHHHHH-HHHHHhCCCCEEEeeCCCCHHH
Confidence 01111223466999999999998 8888889999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHH
Q psy10680 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDI 494 (537)
Q Consensus 415 r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~ 494 (537)
|..+++.|++|+++|||||+++++|||+|++++||+||.|.+...|+||+||+||.|+.|.+++++.+.+...+..+.+.
T Consensus 284 R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~ 363 (629)
T PRK11634 284 REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 363 (629)
T ss_pred HHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887777766655
Q ss_pred HH
Q psy10680 495 LN 496 (537)
Q Consensus 495 l~ 496 (537)
+.
T Consensus 364 ~~ 365 (629)
T PRK11634 364 MK 365 (629)
T ss_pred hC
Confidence 44
No 19
>KOG0341|consensus
Probab=100.00 E-value=3.3e-48 Score=363.84 Aligned_cols=392 Identities=37% Similarity=0.542 Sum_probs=316.1
Q ss_pred EeeeecccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccc
Q psy10680 10 VSLEARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQ 89 (537)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~ 89 (537)
|.++..-...+-.+|...-.+..+.+.|. +.|+.+|||+|.+-+|.+++|+|.|-.|-||||||++
T Consensus 158 I~veGd~ipPPIksF~eMKFP~~~L~~lk-~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlv------------- 223 (610)
T KOG0341|consen 158 ILVEGDDIPPPIKSFKEMKFPKPLLRGLK-KKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV------------- 223 (610)
T ss_pred EEeeCCCCCCchhhhhhccCCHHHHHHHH-hcCCCCCCceeecCcceEeecCceeeEEeecCCceEE-------------
Confidence 45555554557778888888888899995 5999999999999999999999999999999999999
Q ss_pred cCCCCCcccccccccCccccccchhhHhHhhhcCC---CCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc------ee
Q psy10680 90 CGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP---KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM------RI 160 (537)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~ 160 (537)
|++|++-..+.+. .+.++.||..||+||+++|+.|+...+..+...+ .+
T Consensus 224 ----------------------FvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~l 281 (610)
T KOG0341|consen 224 ----------------------FVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPEL 281 (610)
T ss_pred ----------------------EeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 6666665554432 3456679999999999999999999888766543 47
Q ss_pred eEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccc
Q psy10680 161 RHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLC 239 (537)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~ 239 (537)
+...+.||.+..++....+++.+|+|+||++|.++|..+..++.-.+++.+||||+|.+.+|...++.++..+.. ++..
T Consensus 282 Rs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTL 361 (610)
T KOG0341|consen 282 RSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTL 361 (610)
T ss_pred hhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhhee
Confidence 888999999999999999999999999999999999999999998999999999999999999999999998876 6665
Q ss_pred cCCceeecC-chhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHh
Q psy10680 240 RGAEIVVAT-PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLE 318 (537)
Q Consensus 240 ~~~~~~saT-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (537)
++||| |..+..|..+..... +..-+......-+ ++.+-+.... ....++..+
T Consensus 362 ----LFSATMP~KIQ~FAkSALVKP--vtvNVGRAGAAsl------dViQevEyVk--------------qEaKiVylL- 414 (610)
T KOG0341|consen 362 ----LFSATMPKKIQNFAKSALVKP--VTVNVGRAGAASL------DVIQEVEYVK--------------QEAKIVYLL- 414 (610)
T ss_pred ----eeeccccHHHHHHHHhhcccc--eEEecccccccch------hHHHHHHHHH--------------hhhhhhhHH-
Confidence 99999 999998888754332 1111110000000 1111111100 000111111
Q ss_pred hccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccc
Q psy10680 319 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSS 398 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~ 398 (537)
-+.........|||+.+..+..+ ..+|.-
T Consensus 415 --------------------------------------------------eCLQKT~PpVLIFaEkK~DVD~I-hEYLLl 443 (610)
T KOG0341|consen 415 --------------------------------------------------ECLQKTSPPVLIFAEKKADVDDI-HEYLLL 443 (610)
T ss_pred --------------------------------------------------HHhccCCCceEEEeccccChHHH-HHHHHH
Confidence 01111223445999999999999 777777
Q ss_pred cccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEE
Q psy10680 399 SLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYT 478 (537)
Q Consensus 399 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~ 478 (537)
.|..++.+|||-++++|...++.|+.|+.+|||||++++.|+|+|++.+||+||+|.....|+||+||+||.|+.|.+-.
T Consensus 444 KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATT 523 (610)
T KOG0341|consen 444 KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATT 523 (610)
T ss_pred ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCC-CcchHHHHHHHHHHccccccHHHHHHHhcCCC
Q psy10680 479 LFTPL-NGNKAQDLIDILNEAHQFVPDRLLLLAAKNKP 515 (537)
Q Consensus 479 l~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 515 (537)
|+... +...+.++..++.+..|.+|+.|.+++-....
T Consensus 524 fINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~~E~ 561 (610)
T KOG0341|consen 524 FINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGPMEE 561 (610)
T ss_pred eecccchHHHHHHHHHHHHHhhccCCHHHHHhCCCccc
Confidence 88875 66778999999999999999999988866553
No 20
>KOG0342|consensus
Probab=100.00 E-value=4.7e-48 Score=374.41 Aligned_cols=366 Identities=29% Similarity=0.434 Sum_probs=290.4
Q ss_pred ceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcc
Q psy10680 18 YFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSK 97 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~ 97 (537)
+.+...++...+++...+++ +.+||..+|++|..+++.++.|+|+++.|.||+|||++
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi-~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlA--------------------- 135 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAI-KEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLA--------------------- 135 (543)
T ss_pred hhhhhHhhccccCHHHHHHH-HhcCccchhHHHHhhcCccCCCccceeeeccCCCceee---------------------
Confidence 45667788999999999999 57999999999999999999999999999999999999
Q ss_pred cccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcchhHhHH
Q psy10680 98 EESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQTR 176 (537)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 176 (537)
|++|+++.+...+...+ ++-.++|++||++|+.|++.+++.+.... ++.+..+.||........
T Consensus 136 --------------FLiPaie~l~k~~~~~r-~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~ 200 (543)
T KOG0342|consen 136 --------------FLLPAIELLRKLKFKPR-NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD 200 (543)
T ss_pred --------------ehhHHHHHHHhcccCCC-CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH
Confidence 88888888776654333 46679999999999999999999988887 889999999999887778
Q ss_pred HhccCCcEEEeCCchhHHHHhcCcc-cccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHH
Q psy10680 177 DLCRGAEIVVATPGRLIDFLESGTT-NVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLID 254 (537)
Q Consensus 177 ~l~~~~~Ivv~Tp~~l~~~l~~~~~-~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~ 254 (537)
++.++++|+|+||++|...+++... ...+++++|+||||++++.+|...+.+|+..++. .++..++||| |..+.+
T Consensus 201 kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk---~rqt~LFSAT~~~kV~~ 277 (543)
T KOG0342|consen 201 KLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPK---QRQTLLFSATQPSKVKD 277 (543)
T ss_pred HhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccc---cceeeEeeCCCcHHHHH
Confidence 8878999999999999999976544 5577789999999999999999999999999985 2344499999 776665
Q ss_pred HhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecch
Q psy10680 255 FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDE 334 (537)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (537)
.......+ .+...-+.+..+..... ..............+...
T Consensus 278 l~~~~L~~-d~~~v~~~d~~~~~The------------------~l~Qgyvv~~~~~~f~ll------------------ 320 (543)
T KOG0342|consen 278 LARGALKR-DPVFVNVDDGGERETHE------------------RLEQGYVVAPSDSRFSLL------------------ 320 (543)
T ss_pred HHHHhhcC-CceEeecCCCCCcchhh------------------cccceEEeccccchHHHH------------------
Confidence 54442222 32332232222211100 000001111111111100
Q ss_pred hhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHH
Q psy10680 335 ADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414 (537)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 414 (537)
+.++.......+.+|||.+......+ +.+|+...+++..+||++++..
T Consensus 321 -------------------------------~~~LKk~~~~~KiiVF~sT~~~vk~~-~~lL~~~dlpv~eiHgk~~Q~k 368 (543)
T KOG0342|consen 321 -------------------------------YTFLKKNIKRYKIIVFFSTCMSVKFH-AELLNYIDLPVLEIHGKQKQNK 368 (543)
T ss_pred -------------------------------HHHHHHhcCCceEEEEechhhHHHHH-HHHHhhcCCchhhhhcCCcccc
Confidence 00111111124556999888888887 9999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHH
Q psy10680 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLI 492 (537)
Q Consensus 415 r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~ 492 (537)
|..+...|++.+.-||+||++.+||+|+|++++||+||+|.++.+|+||+||+||.|..|.+++++.|.+...++-+.
T Consensus 369 RT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 369 RTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred cchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877666665
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.4e-47 Score=399.95 Aligned_cols=368 Identities=31% Similarity=0.468 Sum_probs=282.0
Q ss_pred cCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccc
Q psy10680 21 SGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (537)
...|..+.+++.+..+|. .+||..|+++|.++|+.+++|+|+|+++|||||||++
T Consensus 86 ~~~f~~~~l~~~l~~~l~-~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTla------------------------ 140 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIH-DLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAA------------------------ 140 (475)
T ss_pred CCCHhHCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHH------------------------
Confidence 445777889999999996 5999999999999999999999999999999999999
Q ss_pred ccccCccccccchhhHhHhhhcCCCCC--CCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh
Q psy10680 101 SWWNNNVVDVKYILPALYHILKMPKLE--EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL 178 (537)
Q Consensus 101 ~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 178 (537)
|++|++..+...+... ...++++|||+||++|+.|+.+.++.+....++++..++|+.+...+...+
T Consensus 141 -----------y~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~ 209 (475)
T PRK01297 141 -----------FLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQL 209 (475)
T ss_pred -----------HHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHH
Confidence 7888888776543211 112578999999999999999999999888889999999998777666665
Q ss_pred c-cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHHHh
Q psy10680 179 C-RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFL 256 (537)
Q Consensus 179 ~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l 256 (537)
. ..++|+|+||++|..++......++++++|||||+|++.+.++...+..++...+... ..+..++||| +.......
T Consensus 210 ~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~-~~q~i~~SAT~~~~~~~~~ 288 (475)
T PRK01297 210 EARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKE-ERQTLLFSATFTDDVMNLA 288 (475)
T ss_pred hCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCC-CceEEEEEeecCHHHHHHH
Confidence 4 4689999999999998888888899999999999999999999998998888765311 1233489999 55444433
Q ss_pred hhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhh
Q psy10680 257 ESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEAD 336 (537)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (537)
....... ... .... ... ......... ......+
T Consensus 289 ~~~~~~~--~~v-~~~~-~~~------------------~~~~~~~~~-------------------------~~~~~~~ 321 (475)
T PRK01297 289 KQWTTDP--AIV-EIEP-ENV------------------ASDTVEQHV-------------------------YAVAGSD 321 (475)
T ss_pred HHhccCC--EEE-Eecc-CcC------------------CCCcccEEE-------------------------EEecchh
Confidence 3311110 000 0000 000 000000000 0000000
Q ss_pred hhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHH
Q psy10680 337 RMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRD 416 (537)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~ 416 (537)
.. ..+..........+.+|||.+...++.+ ...+...++.+..+||+++..+|.
T Consensus 322 ---------k~----------------~~l~~ll~~~~~~~~IVF~~s~~~~~~l-~~~L~~~~~~~~~~~g~~~~~~R~ 375 (475)
T PRK01297 322 ---------KY----------------KLLYNLVTQNPWERVMVFANRKDEVRRI-EERLVKDGINAAQLSGDVPQHKRI 375 (475)
T ss_pred ---------HH----------------HHHHHHHHhcCCCeEEEEeCCHHHHHHH-HHHHHHcCCCEEEEECCCCHHHHH
Confidence 00 0000011111234567999999999988 778888889999999999999999
Q ss_pred HHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHH
Q psy10680 417 QTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILN 496 (537)
Q Consensus 417 ~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~ 496 (537)
++++.|++|++++||||+++++|||+|++++||+||+|.+..+|+||+||+||.|..|.+++|+.+.|...+..+.+++.
T Consensus 376 ~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~ 455 (475)
T PRK01297 376 KTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLG 455 (475)
T ss_pred HHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877888877776
Q ss_pred Hc
Q psy10680 497 EA 498 (537)
Q Consensus 497 ~~ 498 (537)
..
T Consensus 456 ~~ 457 (475)
T PRK01297 456 RK 457 (475)
T ss_pred CC
Confidence 54
No 22
>KOG0345|consensus
Probab=100.00 E-value=1.8e-47 Score=367.82 Aligned_cols=352 Identities=32% Similarity=0.470 Sum_probs=262.7
Q ss_pred CCcceeee--hhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 22 GYINVLIA--SDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 22 ~~~~~~~~--~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
..|..+.. ++++..++. .+||+..||+|..+||.+++++||++.++||||||++
T Consensus 4 ~~~~~l~~~L~~~l~~~l~-~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlA----------------------- 59 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALD-ESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLA----------------------- 59 (567)
T ss_pred cchhhcCCCccHHHHHHHH-hcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhh-----------------------
Confidence 34554444 499999995 6999999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhccc-ceeeEEEEEcCcchhHhHHHh
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT-MRIRHACLYGGTSKMYQTRDL 178 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 178 (537)
|++|++..+...........--+|||+||++|+.|+...+..|... .++++.++.||.+..+....+
T Consensus 60 ------------FllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~f 127 (567)
T KOG0345|consen 60 ------------FLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTF 127 (567)
T ss_pred ------------HHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHH
Confidence 8889998885443222111235899999999999999999988877 578899999998877777666
Q ss_pred c-cCCcEEEeCCchhHHHHhcCcc--cccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHH
Q psy10680 179 C-RGAEIVVATPGRLIDFLESGTT--NVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLI 253 (537)
Q Consensus 179 ~-~~~~Ivv~Tp~~l~~~l~~~~~--~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~ 253 (537)
. .+++|+||||++|..++.+... ++..+.++|+||||++++.+|...++.|+..+|. +... ++||| .....
T Consensus 128 kee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTG----LFSATq~~~v~ 203 (567)
T KOG0345|consen 128 KEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTG----LFSATQTQEVE 203 (567)
T ss_pred HHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccc----cccchhhHHHH
Confidence 5 4788999999999999988555 4559999999999999999999999999999987 4444 99999 44444
Q ss_pred HHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecc
Q psy10680 254 DFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLD 333 (537)
Q Consensus 254 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (537)
+......-+..++. +-.+.. . ..| ......|+.+.
T Consensus 204 dL~raGLRNpv~V~--V~~k~~--------------------~--~tP---------------------S~L~~~Y~v~~ 238 (567)
T KOG0345|consen 204 DLARAGLRNPVRVS--VKEKSK--------------------S--ATP---------------------SSLALEYLVCE 238 (567)
T ss_pred HHHHhhccCceeee--eccccc--------------------c--cCc---------------------hhhcceeeEec
Confidence 43332111111111 100000 0 000 00011111111
Q ss_pred hhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccc--cccccccccCCCC
Q psy10680 334 EADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSS--SLYRAMGIHGDKS 411 (537)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~ 411 (537)
...+.. ++..+.......+.+||+.+...++.. ...+.. ....++.+||.|+
T Consensus 239 a~eK~~-------------------------~lv~~L~~~~~kK~iVFF~TCasVeYf-~~~~~~~l~~~~i~~iHGK~~ 292 (567)
T KOG0345|consen 239 ADEKLS-------------------------QLVHLLNNNKDKKCIVFFPTCASVEYF-GKLFSRLLKKREIFSIHGKMS 292 (567)
T ss_pred HHHHHH-------------------------HHHHHHhccccccEEEEecCcchHHHH-HHHHHHHhCCCcEEEecchhc
Confidence 111100 000001112234566888888877665 333333 3467888999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 412 QWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 412 ~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
...|..+++.|+.....+|+||+++++|||+|++++||+||+|.++..|.||+||+||.|..|.+++|+.+.+
T Consensus 293 q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E 365 (567)
T KOG0345|consen 293 QKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPRE 365 (567)
T ss_pred chhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccH
Confidence 9999999999999888999999999999999999999999999999999999999999999999999999844
No 23
>KOG0348|consensus
Probab=100.00 E-value=1.4e-47 Score=373.26 Aligned_cols=406 Identities=30% Similarity=0.429 Sum_probs=287.8
Q ss_pred eecccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCC
Q psy10680 13 EARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGR 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~ 92 (537)
+.....|....|-.+++++.+...|...++|..||.+|.++||.++.|+|++|.++||||||++
T Consensus 127 ~v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLA---------------- 190 (708)
T KOG0348|consen 127 QVSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLA---------------- 190 (708)
T ss_pred cccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHH----------------
Confidence 3344557888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCccccccchhhHhHhhhcC-CCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcc
Q psy10680 93 SNTSKEESSWWNNNVVDVKYILPALYHILKM-PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTS 170 (537)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~ 170 (537)
|++|+++.+..+ ++..+..|+.+||||||++|+.|+++.+.++...+ -+-.+.+.||..
T Consensus 191 -------------------YllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEk 251 (708)
T KOG0348|consen 191 -------------------YLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEK 251 (708)
T ss_pred -------------------HHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccc
Confidence 788888888765 45567789999999999999999999999887754 345577888888
Q ss_pred hhHhHHHhccCCcEEEeCCchhHHHHhc-CcccccceeEEEecchhhhhhCCChHHHHHHHhhccc--cc------c--c
Q psy10680 171 KMYQTRDLCRGAEIVVATPGRLIDFLES-GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT--RD------L--C 239 (537)
Q Consensus 171 ~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~--~~------~--~ 239 (537)
......+++++++|+|+||++|.+-|.+ ..+.++++++|||||+|++++.+|+..+..|+..+.. .. . .
T Consensus 252 kKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q 331 (708)
T KOG0348|consen 252 KKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQ 331 (708)
T ss_pred cccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHH
Confidence 8888899999999999999999987765 5568899999999999999999999999999988743 10 1 1
Q ss_pred cCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhh
Q psy10680 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLES 319 (537)
Q Consensus 240 ~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (537)
.+-.++|||-..-...+....+. . -.++.+|+.+.-.. +.. ....+............+. ..+
T Consensus 332 ~q~mLlSATLtd~V~rLa~~sLk-D-pv~I~ld~s~~~~~----p~~-~a~~ev~~~~~~~~l~~~~--iPe-------- 394 (708)
T KOG0348|consen 332 LQNMLLSATLTDGVNRLADLSLK-D-PVYISLDKSHSQLN----PKD-KAVQEVDDGPAGDKLDSFA--IPE-------- 394 (708)
T ss_pred HHhHhhhhhhHHHHHHHhhcccc-C-ceeeeccchhhhcC----cch-hhhhhcCCccccccccccc--CcH--------
Confidence 22336788833322222221111 1 11111333322211 000 0000000000000000000 000
Q ss_pred ccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccc-
Q psy10680 320 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSS- 398 (537)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~- 398 (537)
.-...+......-.++.+..++.-.+..+...+.+||+.+...++..+......
T Consensus 395 -------------------------qL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 395 -------------------------QLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred -------------------------HhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhh
Confidence 000111111112223333333333344444456678887766665442111110
Q ss_pred --------------------cccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChh
Q psy10680 399 --------------------SLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTE 458 (537)
Q Consensus 399 --------------------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~ 458 (537)
.+.++..+||+|++++|..++..|+...-.||+||++++||+|+|++++||+||+|.++.
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~a 529 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTA 529 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHH
Confidence 124566789999999999999999998888999999999999999999999999999999
Q ss_pred hhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHH
Q psy10680 459 NYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDIL 495 (537)
Q Consensus 459 ~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l 495 (537)
+|+||+||++|.|.+|.+++|..|.+.+.+..+...-
T Consensus 530 dylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 530 DYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred HHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 9999999999999999999999999887555554443
No 24
>KOG0326|consensus
Probab=100.00 E-value=2.8e-48 Score=355.97 Aligned_cols=370 Identities=28% Similarity=0.450 Sum_probs=304.5
Q ss_pred ceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcc
Q psy10680 18 YFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSK 97 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~ 97 (537)
......|+...+.+++..++. ..||..|+|+|.++||..+.|+|++..|..|+|||-+
T Consensus 81 ~TkG~efEd~~Lkr~LLmgIf-e~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a--------------------- 138 (459)
T KOG0326|consen 81 ATKGNEFEDYCLKRELLMGIF-EKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAA--------------------- 138 (459)
T ss_pred cccCccHHHhhhhHHHHHHHH-HhccCCCCCccccccceeecchhhhhhccCCCCCccc---------------------
Confidence 345677888999999999996 4899999999999999999999999999999999999
Q ss_pred cccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH
Q psy10680 98 EESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD 177 (537)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
|++|+++.+.... ..-+++++|||++|+.|+.+.++.+++++++.+...+||++..+...+
T Consensus 139 --------------~~IP~Lekid~~~-----~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~R 199 (459)
T KOG0326|consen 139 --------------YCIPVLEKIDPKK-----NVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMR 199 (459)
T ss_pred --------------eechhhhhcCccc-----cceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceee
Confidence 7888888775432 245689999999999999999999999999999999999998887777
Q ss_pred hccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHH
Q psy10680 178 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDF 255 (537)
Q Consensus 178 l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~ 255 (537)
+....+++|+||++++++...+.-.+++..++|+||||.+++..|...+.+++..+|. ++.. ++||| |-....|
T Consensus 200 l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQil----lySATFP~tVk~F 275 (459)
T KOG0326|consen 200 LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQIL----LYSATFPLTVKGF 275 (459)
T ss_pred ecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceee----EEecccchhHHHH
Confidence 8888999999999999999999999999999999999999999999999999999998 5555 99999 8777777
Q ss_pred hhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchh
Q psy10680 256 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEA 335 (537)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (537)
+........ .++-.+++...+ ......+.. +.
T Consensus 276 m~~~l~kPy-----~INLM~eLtl~G-----------------vtQyYafV~--------------------------e~ 307 (459)
T KOG0326|consen 276 MDRHLKKPY-----EINLMEELTLKG-----------------VTQYYAFVE--------------------------ER 307 (459)
T ss_pred HHHhccCcc-----eeehhhhhhhcc-----------------hhhheeeec--------------------------hh
Confidence 766322211 011111110000 000000001 10
Q ss_pred hhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHH
Q psy10680 336 DRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNR 415 (537)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r 415 (537)
++. ..+..++..-+-...+|||++...++.+ ++...+.|+.+..+|+.|-++.|
T Consensus 308 qKv-------------------------hCLntLfskLqINQsIIFCNS~~rVELL-AkKITelGyscyyiHakM~Q~hR 361 (459)
T KOG0326|consen 308 QKV-------------------------HCLNTLFSKLQINQSIIFCNSTNRVELL-AKKITELGYSCYYIHAKMAQEHR 361 (459)
T ss_pred hhh-------------------------hhHHHHHHHhcccceEEEeccchHhHHH-HHHHHhccchhhHHHHHHHHhhh
Confidence 000 0122223333334455999999999988 99999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHH
Q psy10680 416 DQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDIL 495 (537)
Q Consensus 416 ~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l 495 (537)
.++..+|+.|.++.||||+.+.+|||++++++||+||+|+++..|+||+||+||.|..|.++.+++-.|...+.++.+.+
T Consensus 362 NrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eL 441 (459)
T KOG0326|consen 362 NRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQEL 441 (459)
T ss_pred hhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999899998888
Q ss_pred HHccccccHHH
Q psy10680 496 NEAHQFVPDRL 506 (537)
Q Consensus 496 ~~~~~~~~~~l 506 (537)
...-.++|..+
T Consensus 442 GtEI~pip~~i 452 (459)
T KOG0326|consen 442 GTEIKPIPSNI 452 (459)
T ss_pred ccccccCCCcC
Confidence 87777777554
No 25
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1e-46 Score=389.06 Aligned_cols=362 Identities=30% Similarity=0.464 Sum_probs=278.8
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
...+|..+++++.+..+|. ++||..|+++|.++|+.+++|+|++++||||+|||++
T Consensus 26 ~~~~~~~l~l~~~~~~~l~-~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~----------------------- 81 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIY-SYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTAT----------------------- 81 (401)
T ss_pred ccCCHhhCCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHH-----------------------
Confidence 3477888899999999995 5899999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|++|++..+.... .++++||++|+++|+.|+.+.+..+....++.+..+.|+.........+.
T Consensus 82 ------------~~l~~l~~~~~~~-----~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 144 (401)
T PTZ00424 82 ------------FVIAALQLIDYDL-----NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLK 144 (401)
T ss_pred ------------HHHHHHHHhcCCC-----CCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHc
Confidence 7888877664221 25679999999999999999999888777888888899888777777777
Q ss_pred cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHhh
Q psy10680 180 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFLE 257 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l~ 257 (537)
.+++|+|+||+.+.+.+......++++++||+||||++.+.++...+..++..++. .+.. ++||| |........
T Consensus 145 ~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i----~~SAT~~~~~~~~~~ 220 (401)
T PTZ00424 145 AGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVA----LFSATMPNEILELTT 220 (401)
T ss_pred CCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEE----EEEecCCHHHHHHHH
Confidence 78899999999999999888888999999999999999998888888888877654 3444 88999 554443332
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
...... ..... .. .... ...................
T Consensus 221 ~~~~~~--~~~~~-~~-~~~~------------------~~~~~~~~~~~~~~~~~~~---------------------- 256 (401)
T PTZ00424 221 KFMRDP--KRILV-KK-DELT------------------LEGIRQFYVAVEKEEWKFD---------------------- 256 (401)
T ss_pred HHcCCC--EEEEe-CC-CCcc------------------cCCceEEEEecChHHHHHH----------------------
Confidence 211000 00000 00 0000 0000000000000000000
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQ 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~ 417 (537)
.+..........+.+|||.+...++.+ ...+...++.+..+||+++..+|..
T Consensus 257 ---------------------------~l~~~~~~~~~~~~ivF~~t~~~~~~l-~~~l~~~~~~~~~~h~~~~~~~R~~ 308 (401)
T PTZ00424 257 ---------------------------TLCDLYETLTITQAIIYCNTRRKVDYL-TKKMHERDFTVSCMHGDMDQKDRDL 308 (401)
T ss_pred ---------------------------HHHHHHHhcCCCeEEEEecCcHHHHHH-HHHHHHCCCcEEEEeCCCCHHHHHH
Confidence 000001111223456999999998888 7788888899999999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 418 TLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 418 ~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
+++.|++|+++|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|..|.+++++.+.+...+..+.+.++.
T Consensus 309 i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~ 388 (401)
T PTZ00424 309 IMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNT 388 (401)
T ss_pred HHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888887777776664
Q ss_pred c
Q psy10680 498 A 498 (537)
Q Consensus 498 ~ 498 (537)
.
T Consensus 389 ~ 389 (401)
T PTZ00424 389 Q 389 (401)
T ss_pred c
Confidence 3
No 26
>KOG0334|consensus
Probab=100.00 E-value=2.8e-46 Score=392.90 Aligned_cols=396 Identities=40% Similarity=0.614 Sum_probs=321.6
Q ss_pred EeeeecccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccc
Q psy10680 10 VSLEARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQ 89 (537)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~ 89 (537)
|.+.++--..+-.+|.+.+++..+..-+ +++||..|+++|.+|||++++|+++|.+|.||||||++
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tl-kkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~a------------- 418 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETL-KKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLA------------- 418 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHH-HHhcCCCCcchhhhhcchhccCcceEEeeccCCccchh-------------
Confidence 3344444445778999999999999999 77999999999999999999999999999999999999
Q ss_pred cCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCc
Q psy10680 90 CGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169 (537)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 169 (537)
|++|++.++..++..+.+.||.+||++||++|+.|+.++++.|...++++++++||+.
T Consensus 419 ----------------------f~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~ 476 (997)
T KOG0334|consen 419 ----------------------FLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGS 476 (997)
T ss_pred ----------------------hhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCc
Confidence 8999999999998888899999999999999999999999999999999999999999
Q ss_pred chhHhHHHhccCCcEEEeCCchhHHHHhcCc---ccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCcee
Q psy10680 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGT---TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIV 245 (537)
Q Consensus 170 ~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~---~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~ 245 (537)
....+...+++++.|+||||+++..++-... ..+.+..++|+||||+|++.+|.+.++.|++.+++ ++.. ++
T Consensus 477 ~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtv----lf 552 (997)
T KOG0334|consen 477 GISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTV----LF 552 (997)
T ss_pred cHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhh----hh
Confidence 9999999999999999999999999874333 35667779999999999999999999999998876 5555 99
Q ss_pred ecC-chhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccc
Q psy10680 246 VAT-PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNV 324 (537)
Q Consensus 246 saT-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (537)
||| |-.+ ..+...... .++..++... ..+ ...+.+ .+-+......+...++..
T Consensus 553 Satfpr~m-~~la~~vl~-~Pveiiv~~~--svV----~k~V~q----------~v~V~~~e~eKf~kL~eL-------- 606 (997)
T KOG0334|consen 553 SATFPRSM-EALARKVLK-KPVEIIVGGR--SVV----CKEVTQ----------VVRVCAIENEKFLKLLEL-------- 606 (997)
T ss_pred hhhhhHHH-HHHHHHhhc-CCeeEEEccc--eeE----eccceE----------EEEEecCchHHHHHHHHH--------
Confidence 999 5443 222221222 2222222110 000 000000 000000001122222222
Q ss_pred cceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccc
Q psy10680 325 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAM 404 (537)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~ 404 (537)
+.......+.+|||.....+..+ ...|.+.|+++.
T Consensus 607 --------------------------------------------l~e~~e~~~tiiFv~~qe~~d~l-~~~L~~ag~~~~ 641 (997)
T KOG0334|consen 607 --------------------------------------------LGERYEDGKTIIFVDKQEKADAL-LRDLQKAGYNCD 641 (997)
T ss_pred --------------------------------------------HHHHhhcCCEEEEEcCchHHHHH-HHHHHhcCcchh
Confidence 22222355666999999999999 666668999999
Q ss_pred cccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 405 GIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 405 ~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
.+||+.+..+|..++++|+++.+++||||+.+++|+|++++.+||+||+|..+.+|+||.||+||+|..|.+++|+++.+
T Consensus 642 slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 642 SLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred hhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHccccccHHHHHHHhcCCCC
Q psy10680 485 GNKAQDLIDILNEAHQFVPDRLLLLAAKNKPI 516 (537)
Q Consensus 485 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 516 (537)
.....+|.+.+...++++|+-|..+.....+.
T Consensus 722 ~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~ 753 (997)
T KOG0334|consen 722 LKYAGDLCKALELSKQPVPKLLQALSERFKAK 753 (997)
T ss_pred hhhHHHHHHHHHhccCCCchHHHHHHHHHHhh
Confidence 99999999999999999999988877655443
No 27
>KOG0347|consensus
Probab=100.00 E-value=2.8e-46 Score=365.30 Aligned_cols=390 Identities=31% Similarity=0.430 Sum_probs=290.1
Q ss_pred cCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccC-CcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 21 SGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSG-RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~-~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
-.-|..++++..+.++|. ..||..||++|.-++|.+..| .|++-.|.||||||++
T Consensus 180 vsAW~~l~lp~~iL~aL~-~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLA----------------------- 235 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALS-NLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLA----------------------- 235 (731)
T ss_pred hHHHhcCCCCHHHHHHHH-hcCCCCCccchhhcccHhhccchhcccccccCCCceee-----------------------
Confidence 346899999999999996 699999999999999999999 5999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCC--------CCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcch
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPK--------LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~--------~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (537)
|-+|+++.+..... +.....+.+||++|||+|+.|+.+-+..+....++++..+.||...
T Consensus 236 ------------FGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLav 303 (731)
T KOG0347|consen 236 ------------FGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAV 303 (731)
T ss_pred ------------ecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHH
Confidence 45555553332211 1111233599999999999999999999999999999999999999
Q ss_pred hHhHHHhccCCcEEEeCCchhHHHHhcCcc---cccceeEEEecchhhhhhCCChHHHHHHHhhccc--cccccCCceee
Q psy10680 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTT---NVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT--RDLCRGAEIVV 246 (537)
Q Consensus 172 ~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~---~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~--~~~~~~~~~~s 246 (537)
..|.+.+...++|||+||++|+.++..... .+++++++|+||+|+|.+.++...+..++..+.. ....++..++|
T Consensus 304 qKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFS 383 (731)
T KOG0347|consen 304 QKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFS 383 (731)
T ss_pred HHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEE
Confidence 999999989999999999999999965443 6788999999999999999999999999998885 22334555999
Q ss_pred cCch-hHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehh-hhHHHHHHHHhhccccc
Q psy10680 247 ATPG-RLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFIS-ERRDTILHFLESGTTNV 324 (537)
Q Consensus 247 aTp~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 324 (537)
||-. ....-+.. ..... ..+ ......+..++....-......+..... .....+...+.
T Consensus 384 ATlt~~~~~~~~~-----~~k~~-----~k~---~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I------ 444 (731)
T KOG0347|consen 384 ATLTLVLQQPLSS-----SRKKK-----DKE---DELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLI------ 444 (731)
T ss_pred EEeehhhcChhHH-----hhhcc-----chh---hhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhh------
Confidence 9932 11111110 00000 000 0011122222222211111111111111 01111111110
Q ss_pred cceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHH-HHhHhCceeEEEEeeccCcccccccccccccccc
Q psy10680 325 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFW-FILVAGIERWVFMEINHNGTETKHYGVSSSLYRA 403 (537)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~ 403 (537)
.|......+..+ +.-....+.+|||++...+..+ .-+|+..+++.
T Consensus 445 ---------------------------------~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRL-t~~L~~L~i~p 490 (731)
T KOG0347|consen 445 ---------------------------------ECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRL-TVLLNNLDIPP 490 (731)
T ss_pred ---------------------------------cCCccccceeEEEEEeecCCceEEEechHHHHHHH-HHHHhhcCCCC
Confidence 011111111111 1112234556999999999998 99999999999
Q ss_pred ccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCC
Q psy10680 404 MGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPL 483 (537)
Q Consensus 404 ~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~ 483 (537)
..+|+.|.+.+|...+++|+.....|||||++++||+|||.+.+||+|-.|.+..-|+||.||++|++..|..+.++.|.
T Consensus 491 ~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 491 LPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQ 570 (731)
T ss_pred chhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHcc
Q psy10680 484 NGNKAQDLIDILNEAH 499 (537)
Q Consensus 484 ~~~~~~~~~~~l~~~~ 499 (537)
+...+.+++..|++.+
T Consensus 571 e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 571 EVGPLKKLCKTLKKKE 586 (731)
T ss_pred HhHHHHHHHHHHhhcc
Confidence 9999999999998754
No 28
>KOG0343|consensus
Probab=100.00 E-value=8e-44 Score=348.11 Aligned_cols=356 Identities=29% Similarity=0.440 Sum_probs=275.9
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
....|.++.+++...++| +..+|..||.+|+.+||..+.|+|++-.|.||||||++
T Consensus 67 ~~~kF~dlpls~~t~kgL-ke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLA----------------------- 122 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGL-KEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLA----------------------- 122 (758)
T ss_pred hhhhHHhCCCchHHHHhH-hhcCCccHHHHHHhhcchhccCcccccccccCCCceee-----------------------
Confidence 445788899999999999 56899999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|++|+++++.... .....|--+|||.||++|+.|+...+..++...++..+.+.||.+......++
T Consensus 123 ------------FlvPvlE~L~r~k-Ws~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi- 188 (758)
T KOG0343|consen 123 ------------FLVPVLEALYRLK-WSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI- 188 (758)
T ss_pred ------------ehHHHHHHHHHcC-CCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-
Confidence 7788888776543 23344667999999999999999999999999999999999998866554444
Q ss_pred cCCcEEEeCCchhHHHHhc-CcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecCchhHHHHhh
Q psy10680 180 RGAEIVVATPGRLIDFLES-GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVATPGRLIDFLE 257 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~-~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saTp~~~~~~l~ 257 (537)
.+.+|+||||++|+.-+.. ..+.-.++.++|+||||++++++|...+..|+..+|. ++.. ++|||+..-...+.
T Consensus 189 ~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTL----LFSATqt~svkdLa 264 (758)
T KOG0343|consen 189 SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTL----LFSATQTKSVKDLA 264 (758)
T ss_pred hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheee----eeecccchhHHHHH
Confidence 4789999999999987754 4457789999999999999999999999999999998 6666 99999665544443
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
...+.=..... +...+.. .....+.+. ..-....++.+.+..++.
T Consensus 265 RLsL~dP~~vs-vhe~a~~----atP~~L~Q~-----------y~~v~l~~Ki~~L~sFI~------------------- 309 (758)
T KOG0343|consen 265 RLSLKDPVYVS-VHENAVA----ATPSNLQQS-----------YVIVPLEDKIDMLWSFIK------------------- 309 (758)
T ss_pred HhhcCCCcEEE-Eeccccc----cChhhhhhe-----------EEEEehhhHHHHHHHHHH-------------------
Confidence 32221111111 1100000 000011110 001111222333322221
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccc--ccccccccccCCCCHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVS--SSLYRAMGIHGDKSQWNR 415 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~~r 415 (537)
.....+.|||+.+...+..+ ...+. ..|++...+||+|++..|
T Consensus 310 ----------------------------------shlk~K~iVF~SscKqvkf~-~e~F~rlrpg~~l~~L~G~~~Q~~R 354 (758)
T KOG0343|consen 310 ----------------------------------SHLKKKSIVFLSSCKQVKFL-YEAFCRLRPGIPLLALHGTMSQKKR 354 (758)
T ss_pred ----------------------------------hccccceEEEEehhhHHHHH-HHHHHhcCCCCceeeeccchhHHHH
Confidence 11234566999999888777 44433 357889999999999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcch
Q psy10680 416 DQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNK 487 (537)
Q Consensus 416 ~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~ 487 (537)
..+...|.+...-||+||++++||+|+|.+++||++|.|.+..+|+||+||++|.+..|.+++++.|++...
T Consensus 355 ~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 355 IEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred HHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988543
No 29
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.5e-43 Score=384.50 Aligned_cols=395 Identities=18% Similarity=0.187 Sum_probs=262.5
Q ss_pred eeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccC
Q psy10680 26 VLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNN 105 (537)
Q Consensus 26 ~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (537)
+..+++.+.+.| +..||+.||++|.++|+.+++|+|+++++|||||||++
T Consensus 18 ~~~l~~~l~~~L-~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla----------------------------- 67 (742)
T TIGR03817 18 PAWAHPDVVAAL-EAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLA----------------------------- 67 (742)
T ss_pred CCcCCHHHHHHH-HHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHH-----------------------------
Confidence 345678888999 46899999999999999999999999999999999999
Q ss_pred ccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEE
Q psy10680 106 NVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIV 185 (537)
Q Consensus 106 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Iv 185 (537)
|++|++..+...+ +.++|||+||++|+.|+.+.++.+. ..++++..+.|+.+..+ ...+..+++|+
T Consensus 68 ------~~LPiL~~l~~~~------~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~-r~~i~~~~~Ii 133 (742)
T TIGR03817 68 ------YQLPVLSALADDP------RATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTEE-RRWAREHARYV 133 (742)
T ss_pred ------HHHHHHHHHhhCC------CcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHH-HHHHhcCCCEE
Confidence 8888888886532 5689999999999999999999886 44788888888776543 34556679999
Q ss_pred EeCCchhHHHH-hcC---cccccceeEEEecchhhhhhCCChHHHHHHHhhcccc----ccccCCceeecCchhHHHHhh
Q psy10680 186 VATPGRLIDFL-ESG---TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTR----DLCRGAEIVVATPGRLIDFLE 257 (537)
Q Consensus 186 v~Tp~~l~~~l-~~~---~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~----~~~~~~~~~saTp~~~~~~l~ 257 (537)
|+||+.+...+ ... ...++++++||+||+|.+.+ .|+..+..++..++.. ....+..++|||.......+.
T Consensus 134 vtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~ 212 (742)
T TIGR03817 134 LTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAAS 212 (742)
T ss_pred EEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHH
Confidence 99999987533 221 12478999999999999876 4777777776655431 112334488999222222222
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
.... .... ..+...... ............. ... . .... ..
T Consensus 213 ~l~g--~~~~--~i~~~~~~~-------------------~~~~~~~~~p~~~----~~~-~-~~~~-~~---------- 252 (742)
T TIGR03817 213 RLIG--APVV--AVTEDGSPR-------------------GARTVALWEPPLT----ELT-G-ENGA-PV---------- 252 (742)
T ss_pred HHcC--CCeE--EECCCCCCc-------------------CceEEEEecCCcc----ccc-c-cccc-cc----------
Confidence 2110 0011 111000000 0000000000000 000 0 0000 00
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccc--------ccccccccCC
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSS--------LYRAMGIHGD 409 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~ 409 (537)
. .................+.+.+|||++++.++.+ ...+... +..+..+||+
T Consensus 253 ----r---------------~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l-~~~l~~~l~~~~~~l~~~v~~~hgg 312 (742)
T TIGR03817 253 ----R---------------RSASAEAADLLADLVAEGARTLTFVRSRRGAELV-AAIARRLLGEVDPDLAERVAAYRAG 312 (742)
T ss_pred ----c---------------cchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHH-HHHHHHHHHhhccccccchhheecC
Confidence 0 0000000000111112345677999999999888 5444332 5678889999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCC--Ccch
Q psy10680 410 KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPL--NGNK 487 (537)
Q Consensus 410 ~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~--~~~~ 487 (537)
+++.+|.+++++|++|++++||||+++++|||+|++++||++|.|.+..+|+||+||+||.|+.|.++++..+. |...
T Consensus 313 ~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~ 392 (742)
T TIGR03817 313 YLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYL 392 (742)
T ss_pred CCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888643 4334
Q ss_pred HHHHHHHHHHcccc----------ccHHHHHHHhcCCCCChhhhhhHhhhh
Q psy10680 488 AQDLIDILNEAHQF----------VPDRLLLLAAKNKPITTRQWKREYWRR 528 (537)
Q Consensus 488 ~~~~~~~l~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~~~~ 528 (537)
+....+.++..-.. +..++. .+....+++... .++|..
T Consensus 393 ~~~~~~~~~~~~e~~~~~~~n~~il~~hl~-~aa~e~~l~~~~--~~~~~~ 440 (742)
T TIGR03817 393 VHHPEALFDRPVEATVFDPDNPYVLGPHLC-CAAAELPLTEAD--LELFGP 440 (742)
T ss_pred HhCHHHHhcCCCccceeCCCcHHHHHHHHH-HHHhcCCCChHH--HHhhch
Confidence 44444455432111 133444 334455776632 356654
No 30
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.3e-43 Score=375.87 Aligned_cols=376 Identities=18% Similarity=0.190 Sum_probs=259.4
Q ss_pred eeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccC
Q psy10680 26 VLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNN 105 (537)
Q Consensus 26 ~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (537)
...++..+...+.+.+|+..++++|.++|+.+++|+|+++++|||+|||++
T Consensus 441 ~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLc----------------------------- 491 (1195)
T PLN03137 441 NFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLT----------------------------- 491 (1195)
T ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHH-----------------------------
Confidence 345556666777777999999999999999999999999999999999999
Q ss_pred ccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc------
Q psy10680 106 NVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC------ 179 (537)
Q Consensus 106 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------ 179 (537)
|++|++.. ++.+|||+|+++|+.++...+.. .+++...+.++....++...+.
T Consensus 492 ------YQLPAL~~-----------~GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~ 550 (1195)
T PLN03137 492 ------YQLPALIC-----------PGITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEY 550 (1195)
T ss_pred ------HHHHHHHc-----------CCcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcC
Confidence 88888753 45699999999999876666553 3678888888887665544332
Q ss_pred cCCcEEEeCCchhHH---HHhcC--cccccceeEEEecchhhhhhCC--ChHHHHHH---HhhccccccccCCceeecC-
Q psy10680 180 RGAEIVVATPGRLID---FLESG--TTNVNRITYLVLDEADRMLDMG--FEPQIRKI---IQMTRTRDLCRGAEIVVAT- 248 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~---~l~~~--~~~~~~l~liV~DE~h~~~~~~--~~~~l~~i---l~~~~~~~~~~~~~~~saT- 248 (537)
...+|+++||+++.. ++..- ......+.+|||||||++.+|+ |++.+..+ ...++..+.. .++||
T Consensus 551 g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPil----ALTATA 626 (1195)
T PLN03137 551 SKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVL----ALTATA 626 (1195)
T ss_pred CCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeE----EEEecC
Confidence 367999999999862 22211 1123458999999999999986 66666653 2333333333 78999
Q ss_pred chhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhcccccccee
Q psy10680 249 PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRIT 328 (537)
Q Consensus 249 p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (537)
+......+.... .+.... .+. ..+. ...+.
T Consensus 627 T~~V~eDI~~~L-~l~~~~--vfr-------~Sf~----------------------------------------RpNL~ 656 (1195)
T PLN03137 627 TASVKEDVVQAL-GLVNCV--VFR-------QSFN----------------------------------------RPNLW 656 (1195)
T ss_pred CHHHHHHHHHHc-CCCCcE--Eee-------cccC----------------------------------------ccceE
Confidence 444433332211 000000 000 0000 00000
Q ss_pred eeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccC
Q psy10680 329 YLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHG 408 (537)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~ 408 (537)
+.+...... .. ..+..++.....+...||||.++..++.+ +..|...|+.+..+||
T Consensus 657 y~Vv~k~kk--------~l---------------e~L~~~I~~~~~~esgIIYC~SRke~E~L-Ae~L~~~Gika~~YHA 712 (1195)
T PLN03137 657 YSVVPKTKK--------CL---------------EDIDKFIKENHFDECGIIYCLSRMDCEKV-AERLQEFGHKAAFYHG 712 (1195)
T ss_pred EEEeccchh--------HH---------------HHHHHHHHhcccCCCceeEeCchhHHHHH-HHHHHHCCCCeeeeeC
Confidence 000000000 00 00000111111233567999999999998 8888999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchH
Q psy10680 409 DKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKA 488 (537)
Q Consensus 409 ~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~ 488 (537)
+|+..+|..++++|+.|+++|||||+++++|||+|++++||+|++|.+...|+|++|||||.|..|.|++|+...|....
T Consensus 713 GLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~ 792 (1195)
T PLN03137 713 SMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRV 792 (1195)
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998777666
Q ss_pred HHHHHHHHHcc-----------------ccccHHHHHHHhc--CCCCChhhhhhHhhhhh
Q psy10680 489 QDLIDILNEAH-----------------QFVPDRLLLLAAK--NKPITTRQWKREYWRRK 529 (537)
Q Consensus 489 ~~~~~~l~~~~-----------------~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~ 529 (537)
..++..-.... +.-.+.|..+..- +...|+|+..-.||+..
T Consensus 793 ~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~~CRR~~lL~yFGE~ 852 (1195)
T PLN03137 793 KHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEVDCRRFLQLVHFGEK 852 (1195)
T ss_pred HHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChHhhHHHHHHHHcccc
Confidence 55553110000 0001223333222 23368888889999886
No 31
>KOG0346|consensus
Probab=100.00 E-value=5.1e-43 Score=334.21 Aligned_cols=367 Identities=26% Similarity=0.410 Sum_probs=278.6
Q ss_pred cCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccc
Q psy10680 21 SGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (537)
...|...++.+-+.+++. ..|+..||-+|..|||.++.|+|++..|.||||||.+
T Consensus 18 ~ktFe~~gLD~RllkAi~-~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~A------------------------ 72 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAIT-KLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAA------------------------ 72 (569)
T ss_pred hccHHHhCCCHHHHHHHH-HhCcCCcchhhhcccchhhcCcceeeeeccCCCchHH------------------------
Confidence 367889999999999995 5999999999999999999999999999999999999
Q ss_pred ccccCccccccchhhHhHhhhcCCCC-CCCCCceEEEEcccHHHHHHHHHHHHHhcccc--eeeEEEEEcCcchhHhHHH
Q psy10680 101 SWWNNNVVDVKYILPALYHILKMPKL-EEGDGPIALVLAPTRELAQQIQAVISIFSRTM--RIRHACLYGGTSKMYQTRD 177 (537)
Q Consensus 101 ~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 177 (537)
|++|+++.++..... ....++.++|+|||++|+.|++..+.++.... .+++.-+..+.++......
T Consensus 73 -----------YliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~ 141 (569)
T KOG0346|consen 73 -----------YLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVA 141 (569)
T ss_pred -----------HHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHH
Confidence 666777766655443 44568999999999999999999999877655 3566666666666666566
Q ss_pred hccCCcEEEeCCchhHHHHhcCc-ccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchhHHHHh
Q psy10680 178 LCRGAEIVVATPGRLIDFLESGT-TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFL 256 (537)
Q Consensus 178 l~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~~~~~l 256 (537)
+...++|||+||.++...+..+. .....++++|+||||.++.-++...+..+...+|+ ..++.++|||-..-...+
T Consensus 142 L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr---~~Q~~LmSATl~dDv~~L 218 (569)
T KOG0346|consen 142 LMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPR---IYQCFLMSATLSDDVQAL 218 (569)
T ss_pred HccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCc---hhhheeehhhhhhHHHHH
Confidence 67789999999999999998777 67889999999999999999999999999999985 244558899943333333
Q ss_pred hhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhh
Q psy10680 257 ESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEAD 336 (537)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (537)
......-. +. +-+.+.+-. +..........+...+..+
T Consensus 219 KkL~l~nP-vi-Lkl~e~el~------------------~~dqL~Qy~v~cse~DKfl---------------------- 256 (569)
T KOG0346|consen 219 KKLFLHNP-VI-LKLTEGELP------------------NPDQLTQYQVKCSEEDKFL---------------------- 256 (569)
T ss_pred HHHhccCC-eE-EEeccccCC------------------CcccceEEEEEeccchhHH----------------------
Confidence 33222111 11 111110000 0000000000000001000
Q ss_pred hhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHH
Q psy10680 337 RMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRD 416 (537)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~ 416 (537)
..+..+....-..+.+||+++...+-.+ ...+...|++.+.++|.|+...|.
T Consensus 257 ---------------------------llyallKL~LI~gKsliFVNtIdr~YrL-kLfLeqFGiksciLNseLP~NSR~ 308 (569)
T KOG0346|consen 257 ---------------------------LLYALLKLRLIRGKSLIFVNTIDRCYRL-KLFLEQFGIKSCILNSELPANSRC 308 (569)
T ss_pred ---------------------------HHHHHHHHHHhcCceEEEEechhhhHHH-HHHHHHhCcHhhhhcccccccchh
Confidence 0111111222345666999999999998 888899999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEec-----------------------------------ccccCCCcCCccEEEEecCCCChhhhH
Q psy10680 417 QTLRDFRSGYINVLIASD-----------------------------------VASRGLDVEDIKYVVNYDFPDNTENYV 461 (537)
Q Consensus 417 ~~~~~f~~g~~~iLvaT~-----------------------------------~l~~Gidi~~~~~Vi~~d~p~s~~~~~ 461 (537)
-+++.|..|-++++|||+ -.+||||+.++.+|++||+|.+...|+
T Consensus 309 Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYI 388 (569)
T KOG0346|consen 309 HIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYI 388 (569)
T ss_pred hHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHH
Confidence 999999999999999999 135899999999999999999999999
Q ss_pred hhhhcccCCCCCceeEEEecCCCcchHHHHHHHHH
Q psy10680 462 HRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILN 496 (537)
Q Consensus 462 Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~ 496 (537)
||+||++|++++|.++.|+.+.+......+...+.
T Consensus 389 HRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~ 423 (569)
T KOG0346|consen 389 HRVGRTARGNNKGTALSFVSPKEEFGKESLESILK 423 (569)
T ss_pred HhccccccCCCCCceEEEecchHHhhhhHHHHHHh
Confidence 99999999999999999999987665444444444
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.2e-42 Score=362.95 Aligned_cols=363 Identities=21% Similarity=0.261 Sum_probs=251.6
Q ss_pred ccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhH
Q psy10680 37 LGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPA 116 (537)
Q Consensus 37 l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (537)
|.+.+||..|+++|.++|+.+++|+++++++|||+|||++ |++|+
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~-----------------------------------y~lp~ 47 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLC-----------------------------------YQLPA 47 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHH-----------------------------------HHHHH
Confidence 4456899999999999999999999999999999999999 88887
Q ss_pred hHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHH---Hh-ccCCcEEEeCCchh
Q psy10680 117 LYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTR---DL-CRGAEIVVATPGRL 192 (537)
Q Consensus 117 l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l-~~~~~Ivv~Tp~~l 192 (537)
+.. ++.+||++|+++|+.|+...++.+ ++....+.++....++.. .+ ....+|+++||+.+
T Consensus 48 l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l 112 (470)
T TIGR00614 48 LCS-----------DGITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKC 112 (470)
T ss_pred HHc-----------CCcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 642 445899999999999999888753 566777777665543322 22 23579999999987
Q ss_pred HHHH-hcCcc-cccceeEEEecchhhhhhCC--ChHHHHHH---HhhccccccccCCceeecCch-hHHHHhhhCCcccc
Q psy10680 193 IDFL-ESGTT-NVNRITYLVLDEADRMLDMG--FEPQIRKI---IQMTRTRDLCRGAEIVVATPG-RLIDFLESGTTNVN 264 (537)
Q Consensus 193 ~~~l-~~~~~-~~~~l~liV~DE~h~~~~~~--~~~~l~~i---l~~~~~~~~~~~~~~~saTp~-~~~~~l~~~~~~~~ 264 (537)
.... ..... ...++++|||||||++.+++ |...+..+ ....+..+.. .+|||+. .....+.... .+.
T Consensus 113 ~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l----~lTAT~~~~~~~di~~~l-~l~ 187 (470)
T TIGR00614 113 SASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIM----ALTATASPSVREDILRQL-NLK 187 (470)
T ss_pred cCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceE----EEecCCCHHHHHHHHHHc-CCC
Confidence 5321 00111 46789999999999998875 55555443 3334434444 8899943 3222221100 000
Q ss_pred cceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCCh
Q psy10680 265 RITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFE 344 (537)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (537)
...... ..+. ...+.+.+.....
T Consensus 188 ~~~~~~---------~s~~----------------------------------------r~nl~~~v~~~~~-------- 210 (470)
T TIGR00614 188 NPQIFC---------TSFD----------------------------------------RPNLYYEVRRKTP-------- 210 (470)
T ss_pred CCcEEe---------CCCC----------------------------------------CCCcEEEEEeCCc--------
Confidence 000000 0000 0000000000000
Q ss_pred hHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhc
Q psy10680 345 PQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRS 424 (537)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 424 (537)
.........+.....+...+|||.+.+.++.+ +..|...|+.+..+||+|+..+|..+++.|++
T Consensus 211 ---------------~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~l-a~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~ 274 (470)
T TIGR00614 211 ---------------KILEDLLRFIRKEFKGKSGIIYCPSRKKSEQV-TASLQNLGIAAGAYHAGLEISARDDVHHKFQR 274 (470)
T ss_pred ---------------cHHHHHHHHHHHhcCCCceEEEECcHHHHHHH-HHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc
Confidence 00000111111122344557999999999999 88888899999999999999999999999999
Q ss_pred CCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHHccc----
Q psy10680 425 GYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQ---- 500 (537)
Q Consensus 425 g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~~~~---- 500 (537)
|+++|||||+++++|||+|++++||++++|.|...|+||+|||||.|..|.+++++.+.|......++.......+
T Consensus 275 g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 354 (470)
T TIGR00614 275 DEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQQRTYK 354 (470)
T ss_pred CCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhcCCchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988777766543321111
Q ss_pred -cccHHHHHHHhcCCCCChhhhhhHhhhhh
Q psy10680 501 -FVPDRLLLLAAKNKPITTRQWKREYWRRK 529 (537)
Q Consensus 501 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 529 (537)
..-..+..+ .+...++++...+||+..
T Consensus 355 ~~~~~~~~~~--~~~~~crr~~l~~~f~~~ 382 (470)
T TIGR00614 355 LKLYEMMEYC--LNSSTCRRLILLSHFGEK 382 (470)
T ss_pred HHHHHHHHHH--hccccCHHHHHHHHcCCc
Confidence 111222222 244568888889999874
No 33
>KOG0332|consensus
Probab=100.00 E-value=2e-42 Score=324.02 Aligned_cols=379 Identities=27% Similarity=0.396 Sum_probs=286.8
Q ss_pred eecccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccC--CcEEEEccCCCccccccccccchhcccccc
Q psy10680 13 EARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSG--RDLIGIAQTGSGKTLSLTIENTQVARGSQC 90 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~--~~vli~apTGsGKT~~~~~~~~~~~~~~~~ 90 (537)
....|+++-.+|+.+.+.|++.++++ .++|..|+.+|..|+|.++.. +|.|.++..|+|||.+
T Consensus 81 dpnsPlyS~ksFeeL~LkPellkgly-~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaa-------------- 145 (477)
T KOG0332|consen 81 DPNSPLYSAKSFEELRLKPELLKGLY-AMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAA-------------- 145 (477)
T ss_pred CCCCCccccccHHhhCCCHHHHhHHH-HhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHH--------------
Confidence 46789999999999999999999997 599999999999999999977 5999999999999999
Q ss_pred CCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcc
Q psy10680 91 GRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTS 170 (537)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 170 (537)
|+|.+|.++-.... -|+++.|+||++|+.|+.+.+...++..++.......+..
T Consensus 146 ---------------------FvL~MLsrvd~~~~-----~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk 199 (477)
T KOG0332|consen 146 ---------------------FVLTMLSRVDPDVV-----VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK 199 (477)
T ss_pred ---------------------HHHHHHHhcCcccc-----CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc
Confidence 99999988754432 5779999999999999999999998877766655544431
Q ss_pred hhHhHHHhccCCcEEEeCCchhHHHHhc-CcccccceeEEEecchhhhhhC-CChHHHHHHHhhccc-cccccCCceeec
Q psy10680 171 KMYQTRDLCRGAEIVVATPGRLIDFLES-GTTNVNRITYLVLDEADRMLDM-GFEPQIRKIIQMTRT-RDLCRGAEIVVA 247 (537)
Q Consensus 171 ~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~l~liV~DE~h~~~~~-~~~~~l~~il~~~~~-~~~~~~~~~~sa 247 (537)
.. +.-.-..+|+|+||+.+.+++.. +.+.++.++.+|+|||+.|.+. +|.++-..|...++. .+.. ++||
T Consensus 200 ~~---rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~Qll----LFSA 272 (477)
T KOG0332|consen 200 AK---RGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLL----LFSA 272 (477)
T ss_pred cc---cCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEE----eeec
Confidence 11 11112457999999999999877 7789999999999999999874 578888888888873 4444 9999
Q ss_pred C-chhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccc
Q psy10680 248 T-PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNR 326 (537)
Q Consensus 248 T-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (537)
| ......|........+.+... .+.-.+ +.+.+..- .+...+.....+
T Consensus 273 Tf~e~V~~Fa~kivpn~n~i~Lk--~eel~L------~~IkQlyv--------------~C~~~~~K~~~l--------- 321 (477)
T KOG0332|consen 273 TFVEKVAAFALKIVPNANVIILK--REELAL------DNIKQLYV--------------LCACRDDKYQAL--------- 321 (477)
T ss_pred hhHHHHHHHHHHhcCCCceeeee--hhhccc------cchhhhee--------------eccchhhHHHHH---------
Confidence 9 555566555422222211110 000000 00010000 011111111111
Q ss_pred eeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccc
Q psy10680 327 ITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGI 406 (537)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~ 406 (537)
..++....-...+|||.++..+..+ ...+...|..+..+
T Consensus 322 ----------------------------------------~~lyg~~tigqsiIFc~tk~ta~~l-~~~m~~~Gh~V~~l 360 (477)
T KOG0332|consen 322 ----------------------------------------VNLYGLLTIGQSIIFCHTKATAMWL-YEEMRAEGHQVSLL 360 (477)
T ss_pred ----------------------------------------HHHHhhhhhhheEEEEeehhhHHHH-HHHHHhcCceeEEe
Confidence 1111122223455999999999999 88889999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCC------ChhhhHhhhhcccCCCCCceeEEEe
Q psy10680 407 HGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD------NTENYVHRIGRTARSTKTGISYTLF 480 (537)
Q Consensus 407 ~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~------s~~~~~Q~~GRagR~~~~g~~~~l~ 480 (537)
||.|.-.+|..++++|+.|..+|||+|++++||||++.+++||+||.|. ++..|+||+||+||.|+.|.++.++
T Consensus 361 ~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v 440 (477)
T KOG0332|consen 361 HGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLV 440 (477)
T ss_pred eccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEee
Confidence 9999999999999999999999999999999999999999999999994 7889999999999999999999999
Q ss_pred cCCC-cchHHHHHHHHHH-ccccccHHHHHHHh
Q psy10680 481 TPLN-GNKAQDLIDILNE-AHQFVPDRLLLLAA 511 (537)
Q Consensus 481 ~~~~-~~~~~~~~~~l~~-~~~~~~~~l~~~~~ 511 (537)
+..+ .+.+.+|.+.++. -..-.|+.++++.+
T Consensus 441 ~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ek 473 (477)
T KOG0332|consen 441 DDKDSMNIMNKIQKHFNMKIKRLDPDDLDELEK 473 (477)
T ss_pred cccCcHHHHHHHHHHHhhcceecCCccHHHHHH
Confidence 8864 5556688888854 33445666666554
No 34
>KOG0344|consensus
Probab=100.00 E-value=5.2e-42 Score=340.16 Aligned_cols=375 Identities=26% Similarity=0.412 Sum_probs=281.8
Q ss_pred eeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCc
Q psy10680 27 LIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNN 106 (537)
Q Consensus 27 ~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (537)
...++.+...+. ..||..|+++|.+|+|.++.+++++.|||||+|||++
T Consensus 141 ~~~~~~ll~nl~-~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtla------------------------------ 189 (593)
T KOG0344|consen 141 YSMNKRLLENLQ-ELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLA------------------------------ 189 (593)
T ss_pred hhhcHHHHHhHh-hCCCCCCCcccchhhhhhhcccceEEeccCCCcchhh------------------------------
Confidence 344555566664 5899999999999999999999999999999999999
Q ss_pred cccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhc--ccceeeEEEEEcCcchhHhHH-HhccCCc
Q psy10680 107 VVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS--RTMRIRHACLYGGTSKMYQTR-DLCRGAE 183 (537)
Q Consensus 107 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 183 (537)
|.+|++.++..........|-+++|+.|+++|+.|+++++..+. ...+.++.............. .....++
T Consensus 190 -----f~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~d 264 (593)
T KOG0344|consen 190 -----FNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYD 264 (593)
T ss_pred -----hhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHH
Confidence 77777777765554444568899999999999999999999888 555555544443322222111 1224578
Q ss_pred EEEeCCchhHHHHhcCc--ccccceeEEEecchhhhhhC-CChHHHHHHHhhccccccccCCceeecC-chhHHHHhhhC
Q psy10680 184 IVVATPGRLIDFLESGT--TNVNRITYLVLDEADRMLDM-GFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG 259 (537)
Q Consensus 184 Ivv~Tp~~l~~~l~~~~--~~~~~l~liV~DE~h~~~~~-~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~~~ 259 (537)
++|+||-++...+..+. +.++.+.++|+||+|.+++. .|..++..|+..+... .....++||| +.....|....
T Consensus 265 ili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~--~i~~a~FSat~~~~VEE~~~~i 342 (593)
T KOG0344|consen 265 ILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSP--DIRVALFSATISVYVEEWAELI 342 (593)
T ss_pred HHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCc--chhhhhhhccccHHHHHHHHHh
Confidence 99999999998887766 68899999999999999998 8888999998877652 2233478898 66666665543
Q ss_pred CcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhh
Q psy10680 260 TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRML 339 (537)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (537)
.....++..-. .+.....+.. ...+......+.-.+...+..+
T Consensus 343 ~~~~~~vivg~------------~~sa~~~V~Q------elvF~gse~~K~lA~rq~v~~g------------------- 385 (593)
T KOG0344|consen 343 KSDLKRVIVGL------------RNSANETVDQ------ELVFCGSEKGKLLALRQLVASG------------------- 385 (593)
T ss_pred hccceeEEEec------------chhHhhhhhh------hheeeecchhHHHHHHHHHhcc-------------------
Confidence 32222221110 0011000000 0000000011111111111100
Q ss_pred cCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccc-cccccccccccCCCCHHHHHHH
Q psy10680 340 DMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGV-SSSLYRAMGIHGDKSQWNRDQT 418 (537)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~~~~r~~~ 418 (537)
-.....||+.+...+.++ ...| .-.++++..+||..++.+|.+.
T Consensus 386 ----------------------------------~~PP~lIfVQs~eRak~L-~~~L~~~~~i~v~vIh~e~~~~qrde~ 430 (593)
T KOG0344|consen 386 ----------------------------------FKPPVLIFVQSKERAKQL-FEELEIYDNINVDVIHGERSQKQRDET 430 (593)
T ss_pred ----------------------------------CCCCeEEEEecHHHHHHH-HHHhhhccCcceeeEecccchhHHHHH
Confidence 112334999999999999 5555 6678899999999999999999
Q ss_pred HHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHHc
Q psy10680 419 LRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEA 498 (537)
Q Consensus 419 ~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~~ 498 (537)
+++|+.|++.+||||+++++|+|+.++++||+||.|.+..+|+||+||+||+|+.|.+++||...|....+.+.+.+...
T Consensus 431 ~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~s 510 (593)
T KOG0344|consen 431 MERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQS 510 (593)
T ss_pred HHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHh
Q psy10680 499 HQFVPDRLLLLAA 511 (537)
Q Consensus 499 ~~~~~~~l~~~~~ 511 (537)
+..+|+|+..+.+
T Consensus 511 G~evpe~~m~~~k 523 (593)
T KOG0344|consen 511 GCEVPEKIMGIKK 523 (593)
T ss_pred CCcchHHHHhhhh
Confidence 9999999988875
No 35
>KOG4284|consensus
Probab=100.00 E-value=2.6e-41 Score=335.52 Aligned_cols=352 Identities=28% Similarity=0.385 Sum_probs=269.1
Q ss_pred CcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccccc
Q psy10680 23 YINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSW 102 (537)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (537)
.++.+.+...++.+| +..+|..||++|..|||.+..+.|.||++..|+|||++
T Consensus 26 ~fe~l~l~r~vl~gl-rrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlV-------------------------- 78 (980)
T KOG4284|consen 26 GFEQLALWREVLLGL-RRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLV-------------------------- 78 (980)
T ss_pred CHHHHHHHHHHHHHH-HhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEE--------------------------
Confidence 456777888888999 56899999999999999999999999999999999999
Q ss_pred ccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcchhHhHHHhccC
Q psy10680 103 WNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQTRDLCRG 181 (537)
Q Consensus 103 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 181 (537)
|...++..+..+.. .+.++||+||++++.|+...+..++..+ |.++....||+.......++ +.
T Consensus 79 ---------fsv~av~sl~~~~~-----~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~ 143 (980)
T KOG4284|consen 79 ---------FSVLAVESLDSRSS-----HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQ 143 (980)
T ss_pred ---------EEeeeehhcCcccC-----cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hh
Confidence 77777777754332 5668999999999999999999888754 89999999998876555444 46
Q ss_pred CcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhh-CCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHhhh
Q psy10680 182 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFLES 258 (537)
Q Consensus 182 ~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~-~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l~~ 258 (537)
++|+||||+++..+.+.+..+++.++++|+||||.+.+ ..|...+..|+..+|. ++.. .+||| |..+...|..
T Consensus 144 ~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~----a~SATYp~nLdn~Lsk 219 (980)
T KOG4284|consen 144 TRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVA----AFSATYPRNLDNLLSK 219 (980)
T ss_pred ceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheee----EEeccCchhHHHHHHH
Confidence 88999999999999999999999999999999999998 5688899999999887 5555 99999 6555444433
Q ss_pred CCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhh
Q psy10680 259 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRM 338 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (537)
.++ ...++--..... .+..+..........-...-....+...+.+++.
T Consensus 220 -~mr---dp~lVr~n~~d~-------~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~-------------------- 268 (980)
T KOG4284|consen 220 -FMR---DPALVRFNADDV-------QLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFK-------------------- 268 (980)
T ss_pred -Hhc---ccceeecccCCc-------eeechhheeeeccCCcchHHHHHHHHHHHHHHHh--------------------
Confidence 111 111111110000 0111111000000000000000111111111110
Q ss_pred hcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHH
Q psy10680 339 LDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQT 418 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~ 418 (537)
..+..-++|||.....++.+ +..|...|+.+..+.|.|++.+|..+
T Consensus 269 ---------------------------------~ipy~QAlVF~~~~sra~~~-a~~L~ssG~d~~~ISgaM~Q~~Rl~a 314 (980)
T KOG4284|consen 269 ---------------------------------SIPYVQALVFCDQISRAEPI-ATHLKSSGLDVTFISGAMSQKDRLLA 314 (980)
T ss_pred ---------------------------------hCchHHHHhhhhhhhhhhHH-HHHhhccCCCeEEeccccchhHHHHH
Confidence 00111122999999999999 99999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCc
Q psy10680 419 LRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNG 485 (537)
Q Consensus 419 ~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~ 485 (537)
++.++.-.++|||+|+..+||||-+++++||+.|.|.+...|.||+|||||.|.+|.++.|+.....
T Consensus 315 ~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 315 VDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred HHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999987644
No 36
>KOG0350|consensus
Probab=100.00 E-value=1.6e-40 Score=321.87 Aligned_cols=378 Identities=27% Similarity=0.364 Sum_probs=253.3
Q ss_pred ccCCCCCCChhhhhhhhccc---------cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCcccc
Q psy10680 39 KNSGYGKPTSIQAQSWPICL---------SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVD 109 (537)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~~~---------~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (537)
..+++....|+|...+|.++ ..+|+.|.||||||||++
T Consensus 153 ~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLa--------------------------------- 199 (620)
T KOG0350|consen 153 VKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLA--------------------------------- 199 (620)
T ss_pred HHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceee---------------------------------
Confidence 46899999999999998885 357999999999999999
Q ss_pred ccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhcc-C----CcE
Q psy10680 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCR-G----AEI 184 (537)
Q Consensus 110 ~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~----~~I 184 (537)
|++|+++.+...+- +.-++|||+||++|+.|+++.++.+....|+.++.+.|..+......++.. . .||
T Consensus 200 --Y~iPIVQ~L~~R~v----~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DI 273 (620)
T KOG0350|consen 200 --YVIPIVQLLSSRPV----KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDI 273 (620)
T ss_pred --ehhHHHHHHccCCc----cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccce
Confidence 66666666544321 135699999999999999999999999999999999998887777777654 2 389
Q ss_pred EEeCCchhHHHHh-cCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCC-----ceeecCchhHHHHhhh
Q psy10680 185 VVATPGRLIDFLE-SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGA-----EIVVATPGRLIDFLES 258 (537)
Q Consensus 185 vv~Tp~~l~~~l~-~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~-----~~~saTp~~~~~~l~~ 258 (537)
+|+||++|..-+. .+.+.++.++++|+||||++++..|...+..++..+...+..... ...+++|..+.+.+..
T Consensus 274 lVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~ 353 (620)
T KOG0350|consen 274 LVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTK 353 (620)
T ss_pred EEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhh
Confidence 9999999999887 567899999999999999999987777777776665542211000 0112223322222221
Q ss_pred CCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhh
Q psy10680 259 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRM 338 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (537)
......++-.+. +...+...-..+.....+.......... ....+.........
T Consensus 354 ~~~~~~~l~kL~-------~satLsqdP~Kl~~l~l~~Prl~~v~~~-------------------~~~ryslp~~l~~~ 407 (620)
T KOG0350|consen 354 LGKLYPPLWKLV-------FSATLSQDPSKLKDLTLHIPRLFHVSKP-------------------LIGRYSLPSSLSHR 407 (620)
T ss_pred cCCcCchhHhhh-------cchhhhcChHHHhhhhcCCCceEEeecc-------------------cceeeecChhhhhc
Confidence 000000000000 0000011111111111111000000000 00000000000000
Q ss_pred hcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccc----ccccccccccCCCCHHH
Q psy10680 339 LDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVS----SSLYRAMGIHGDKSQWN 414 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~----~~~~~~~~~~~~~~~~~ 414 (537)
.. + .......-.+..+.......+.++|+++...+..+ +..|. ....++..+.|+++.+.
T Consensus 408 ~v----------v-----~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl-~~~L~v~~~~~~~~~s~~t~~l~~k~ 471 (620)
T KOG0350|consen 408 LV----------V-----TEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRL-AHVLKVEFCSDNFKVSEFTGQLNGKR 471 (620)
T ss_pred ee----------e-----cccccchHhHHHHHHHhhcceEEEEecchHHHHHH-HHHHHHHhccccchhhhhhhhhhHHH
Confidence 00 0 00000011111122223334556899888888777 55554 45677888999999999
Q ss_pred HHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHH
Q psy10680 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDI 494 (537)
Q Consensus 415 r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~ 494 (537)
|...++.|++|++++||||+++.||+|+.+++.||+||+|.+...|+||+||++|+|+.|.++.+.+..+...+.++++-
T Consensus 472 r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 472 RYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred HHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877776
Q ss_pred HHH
Q psy10680 495 LNE 497 (537)
Q Consensus 495 l~~ 497 (537)
.+.
T Consensus 552 ~~~ 554 (620)
T KOG0350|consen 552 TNL 554 (620)
T ss_pred hcc
Confidence 665
No 37
>KOG0327|consensus
Probab=100.00 E-value=2.4e-41 Score=319.69 Aligned_cols=366 Identities=31% Similarity=0.482 Sum_probs=290.0
Q ss_pred CCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccc
Q psy10680 22 GYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESS 101 (537)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (537)
.+|+..++.+++.++++ .+||..|+.+|+.||..+..|.|+++.+++|+|||.+
T Consensus 26 dsfddm~L~e~LLrgiy-~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~a------------------------- 79 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIY-AYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAA------------------------- 79 (397)
T ss_pred hhhhhcCCCHHHHhHHH-hhccCCchHHHhccccccccCCceeEeeeccccchhh-------------------------
Confidence 47899999999999996 6999999999999999999999999999999999999
Q ss_pred cccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc-c
Q psy10680 102 WWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC-R 180 (537)
Q Consensus 102 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 180 (537)
|.++++..+.-.. ....+++++|+++|+.|+......++...++++..+.|+.....+...+. .
T Consensus 80 ----------f~i~iLq~iD~~~-----ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~ 144 (397)
T KOG0327|consen 80 ----------FLISILQQIDMSV-----KETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKD 144 (397)
T ss_pred ----------hHHHHHhhcCcch-----HHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhcc
Confidence 7777777653221 13458999999999999999999999999999999999988775554443 4
Q ss_pred CCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHHHhhhC
Q psy10680 181 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG 259 (537)
Q Consensus 181 ~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~~~ 259 (537)
.++|+++||+++..+++...+....+++.|+||++.++..+|...+..++..++..- +..++||| |.+....-...
T Consensus 145 ~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~v---Qv~l~SAT~p~~vl~vt~~f 221 (397)
T KOG0327|consen 145 KPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDV---QVVLLSATMPSDVLEVTKKF 221 (397)
T ss_pred CceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcch---hheeecccCcHHHHHHHHHh
Confidence 689999999999999998888888899999999999999999999999999998832 44499999 87776554442
Q ss_pred CcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhh
Q psy10680 260 TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRML 339 (537)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (537)
..... ... -..++.. +..+... +.......
T Consensus 222 ~~~pv--~i~--vkk~~lt-------l~gikq~--------~i~v~k~~------------------------------- 251 (397)
T KOG0327|consen 222 MREPV--RIL--VKKDELT-------LEGIKQF--------YINVEKEE------------------------------- 251 (397)
T ss_pred ccCce--EEE--ecchhhh-------hhheeee--------eeeccccc-------------------------------
Confidence 22111 111 1111000 0000000 00000000
Q ss_pred cCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHH
Q psy10680 340 DMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTL 419 (537)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~ 419 (537)
+...+..+.. .-...++||++.+.+..+ ...|..+++.+..+||.|.+.+|..++
T Consensus 252 ---------------------k~~~l~dl~~---~~~q~~if~nt~r~v~~l-~~~L~~~~~~~s~~~~d~~q~~R~~~~ 306 (397)
T KOG0327|consen 252 ---------------------KLDTLCDLYR---RVTQAVIFCNTRRKVDNL-TDKLRAHGFTVSAIHGDMEQNERDTLM 306 (397)
T ss_pred ---------------------cccHHHHHHH---hhhcceEEecchhhHHHH-HHHHhhCCceEEEeecccchhhhhHHH
Confidence 0011111111 223344999999999999 777799999999999999999999999
Q ss_pred HHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHHcc
Q psy10680 420 RDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499 (537)
Q Consensus 420 ~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~~~ 499 (537)
+.|++|..++||.|+.+++|+|+.++..||+|+.|.+...|+||+||+||.|.+|.++.++.+.+...+.++.++++-.-
T Consensus 307 ~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i 386 (397)
T KOG0327|consen 307 REFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPI 386 (397)
T ss_pred HHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877655
Q ss_pred ccccHHH
Q psy10680 500 QFVPDRL 506 (537)
Q Consensus 500 ~~~~~~l 506 (537)
...|...
T Consensus 387 ~e~p~~~ 393 (397)
T KOG0327|consen 387 EELPSNF 393 (397)
T ss_pred eecccch
Confidence 5555443
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.4e-40 Score=354.47 Aligned_cols=363 Identities=19% Similarity=0.254 Sum_probs=251.3
Q ss_pred hcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchh
Q psy10680 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYIL 114 (537)
Q Consensus 35 ~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (537)
..|.+.+||..|+++|.++++.++.|+++++++|||+|||++ |++
T Consensus 15 ~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~-----------------------------------y~l 59 (607)
T PRK11057 15 QVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLC-----------------------------------YQI 59 (607)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHH-----------------------------------HHH
Confidence 445455899999999999999999999999999999999999 888
Q ss_pred hHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH---h-ccCCcEEEeCCc
Q psy10680 115 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD---L-CRGAEIVVATPG 190 (537)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~~~~Ivv~Tp~ 190 (537)
|++.. ++.+||++|+++|+.|+...++.. ++....+.++......... + ....+++++||+
T Consensus 60 pal~~-----------~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe 124 (607)
T PRK11057 60 PALVL-----------DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPE 124 (607)
T ss_pred HHHHc-----------CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChH
Confidence 88743 345899999999999999988754 5666666666655443322 2 235789999999
Q ss_pred hhHHHHhcCcccccceeEEEecchhhhhhCC--ChHHHHHH---HhhccccccccCCceeecCchh-HHHHhhh-CCccc
Q psy10680 191 RLIDFLESGTTNVNRITYLVLDEADRMLDMG--FEPQIRKI---IQMTRTRDLCRGAEIVVATPGR-LIDFLES-GTTNV 263 (537)
Q Consensus 191 ~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~--~~~~l~~i---l~~~~~~~~~~~~~~~saTp~~-~~~~l~~-~~~~~ 263 (537)
++............++++|||||||++.+++ |.+.+..+ ....+..+.. ++|||+.. ....+.. ....
T Consensus 125 ~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v----~lTAT~~~~~~~di~~~l~l~- 199 (607)
T PRK11057 125 RLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFM----ALTATADDTTRQDIVRLLGLN- 199 (607)
T ss_pred HhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEE----EEecCCChhHHHHHHHHhCCC-
Confidence 9873211112334578999999999999875 55554433 3333333444 88999432 2222111 0000
Q ss_pred ccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCC
Q psy10680 264 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGF 343 (537)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (537)
.+.... . .+. .. .+.+.+.....
T Consensus 200 ~~~~~~--~--------~~~--------------------------r~--------------nl~~~v~~~~~------- 222 (607)
T PRK11057 200 DPLIQI--S--------SFD--------------------------RP--------------NIRYTLVEKFK------- 222 (607)
T ss_pred CeEEEE--C--------CCC--------------------------CC--------------cceeeeeeccc-------
Confidence 000000 0 000 00 00000000000
Q ss_pred hhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHh
Q psy10680 344 EPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFR 423 (537)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 423 (537)
. ...++ .......+...+|||.++..++.+ +..|...++.+..+||+|+..+|..+++.|+
T Consensus 223 --~---------------~~~l~-~~l~~~~~~~~IIFc~tr~~~e~l-a~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~ 283 (607)
T PRK11057 223 --P---------------LDQLM-RYVQEQRGKSGIIYCNSRAKVEDT-AARLQSRGISAAAYHAGLDNDVRADVQEAFQ 283 (607)
T ss_pred --h---------------HHHHH-HHHHhcCCCCEEEEECcHHHHHHH-HHHHHhCCCCEEEecCCCCHHHHHHHHHHHH
Confidence 0 00000 011112345667999999999999 8888899999999999999999999999999
Q ss_pred cCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHHc-----
Q psy10680 424 SGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEA----- 498 (537)
Q Consensus 424 ~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~~----- 498 (537)
.|+.+|||||+++++|||+|++++||+||.|.|..+|+||+|||||.|..|.+++|+++.|...+..+.+.-...
T Consensus 284 ~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~~~~~~~ 363 (607)
T PRK11057 284 RDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAGQQQDI 363 (607)
T ss_pred CCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876666554321100
Q ss_pred cccccHHHHHHHhcCCCCChhhhhhHhhhhhh
Q psy10680 499 HQFVPDRLLLLAAKNKPITTRQWKREYWRRKS 530 (537)
Q Consensus 499 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 530 (537)
+..--..|..+++ ..-|+|+..-+||+...
T Consensus 364 ~~~~l~~~~~~~~--~~~Crr~~~l~yf~e~~ 393 (607)
T PRK11057 364 ERHKLNAMGAFAE--AQTCRRLVLLNYFGEGR 393 (607)
T ss_pred HHHHHHHHHHHHh--cccCHHHHHHHHhCCCC
Confidence 0001123344443 34689888899998753
No 39
>KOG0337|consensus
Probab=100.00 E-value=7.3e-41 Score=318.04 Aligned_cols=362 Identities=31% Similarity=0.486 Sum_probs=299.5
Q ss_pred cCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccc
Q psy10680 21 SGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (537)
...|...+++..+.+++. ..||+.|||+|++.+|.++.+++++-.+-||||||.+
T Consensus 20 ~g~fqsmgL~~~v~raI~-kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaa------------------------ 74 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIH-KKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAA------------------------ 74 (529)
T ss_pred CCCccccCCCHHHHHHHH-HhhcCCCCchhcccccceeeccccceeeecCCcchhh------------------------
Confidence 478899999999999995 5899999999999999999999999999999999999
Q ss_pred ccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhcc
Q psy10680 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCR 180 (537)
Q Consensus 101 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 180 (537)
|++|+++.+.... +.|.+++++.||++|+.|....++.++...+++..+++|+....+++..+..
T Consensus 75 -----------f~ipm~e~Lk~~s----~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~ 139 (529)
T KOG0337|consen 75 -----------FLIPMIEKLKSHS----QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNE 139 (529)
T ss_pred -----------HHHHHHHHHhhcc----ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhcc
Confidence 9999999887643 3477899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHhhh
Q psy10680 181 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFLES 258 (537)
Q Consensus 181 ~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l~~ 258 (537)
++|||++||.++..+.-.-...++.+.+|||||++.+++++|.+++.+++..++. ++.. ++||| |..+.++...
T Consensus 140 npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTl----lfSatlp~~lv~faka 215 (529)
T KOG0337|consen 140 NPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTL----LFSATLPRDLVDFAKA 215 (529)
T ss_pred CCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEE----EEeccCchhhHHHHHc
Confidence 9999999999998876665678899999999999999999999999999999987 4444 99999 8887887776
Q ss_pred CCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhh
Q psy10680 259 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRM 338 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (537)
.......+..-+..+....+ . ...+.....++...++..+...
T Consensus 216 Gl~~p~lVRldvetkise~l--------k-----------~~f~~~~~a~K~aaLl~il~~~------------------ 258 (529)
T KOG0337|consen 216 GLVPPVLVRLDVETKISELL--------K-----------VRFFRVRKAEKEAALLSILGGR------------------ 258 (529)
T ss_pred cCCCCceEEeehhhhcchhh--------h-----------hheeeeccHHHHHHHHHHHhcc------------------
Confidence 44332222210000110000 0 0000011122333333322110
Q ss_pred hcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHH
Q psy10680 339 LDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQT 418 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~ 418 (537)
......++|+.+..+++.+ ...+...|+....+.|.|++..|...
T Consensus 259 ----------------------------------~~~~~t~vf~~tk~hve~~-~~ll~~~g~~~s~iysslD~~aRk~~ 303 (529)
T KOG0337|consen 259 ----------------------------------IKDKQTIVFVATKHHVEYV-RGLLRDFGGEGSDIYSSLDQEARKIN 303 (529)
T ss_pred ----------------------------------ccccceeEEecccchHHHH-HHHHHhcCCCccccccccChHhhhhc
Confidence 0022345999999999998 99999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHHc
Q psy10680 419 LRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEA 498 (537)
Q Consensus 419 ~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~~ 498 (537)
..+|+.++..++|.|+.+.+|+|+|-...||+||+|.+...|+||+||+.|+|..|.+|.++.+.+...+-++-.++.+.
T Consensus 304 ~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~ 383 (529)
T KOG0337|consen 304 GRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRP 383 (529)
T ss_pred cccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888777653
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.3e-40 Score=352.47 Aligned_cols=362 Identities=19% Similarity=0.274 Sum_probs=251.8
Q ss_pred cccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhh
Q psy10680 36 GLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILP 115 (537)
Q Consensus 36 ~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (537)
.|.+.+||..++++|.++++.++.|+|+++++|||+|||++ |++|
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~-----------------------------------y~lp 48 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLC-----------------------------------YQVP 48 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHH-----------------------------------HHHH
Confidence 35556999999999999999999999999999999999999 8888
Q ss_pred HhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH---h-ccCCcEEEeCCch
Q psy10680 116 ALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD---L-CRGAEIVVATPGR 191 (537)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~~~~Ivv~Tp~~ 191 (537)
++.. ++.++|++|+++|+.|+...++.+ ++.+..++++.+..+.... + ....+|+++||++
T Consensus 49 al~~-----------~g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~ 113 (591)
T TIGR01389 49 ALLL-----------KGLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPER 113 (591)
T ss_pred HHHc-----------CCcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhH
Confidence 7742 345899999999999999988764 5677778777765544332 2 3467999999999
Q ss_pred hHHHHhcCcccccceeEEEecchhhhhhCC--ChHHHHHHHhh---ccccccccCCceeecCc-hhHHHHhhhCCccccc
Q psy10680 192 LIDFLESGTTNVNRITYLVLDEADRMLDMG--FEPQIRKIIQM---TRTRDLCRGAEIVVATP-GRLIDFLESGTTNVNR 265 (537)
Q Consensus 192 l~~~l~~~~~~~~~l~liV~DE~h~~~~~~--~~~~l~~il~~---~~~~~~~~~~~~~saTp-~~~~~~l~~~~~~~~~ 265 (537)
+.+..........++++|||||||++..++ |.+.+..+... .+..+. ..+|||+ ......+.. ...+..
T Consensus 114 l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~v----i~lTAT~~~~~~~~i~~-~l~~~~ 188 (591)
T TIGR01389 114 LEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPR----IALTATADAETRQDIRE-LLRLAD 188 (591)
T ss_pred hcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCE----EEEEeCCCHHHHHHHHH-HcCCCC
Confidence 865333333456789999999999998765 66665555433 333333 3889993 333322222 000000
Q ss_pred ceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChh
Q psy10680 266 ITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEP 345 (537)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (537)
... +.. .+ ....+.+.......
T Consensus 189 ~~~--------~~~-~~----------------------------------------~r~nl~~~v~~~~~--------- 210 (591)
T TIGR01389 189 ANE--------FIT-SF----------------------------------------DRPNLRFSVVKKNN--------- 210 (591)
T ss_pred CCe--------Eec-CC----------------------------------------CCCCcEEEEEeCCC---------
Confidence 000 000 00 00000000000000
Q ss_pred HHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcC
Q psy10680 346 QIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSG 425 (537)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 425 (537)
. ...+...+ ....+...+|||.+...++.+ +..|...|+++..+||+|+..+|..+++.|++|
T Consensus 211 ~---------------~~~l~~~l-~~~~~~~~IIf~~sr~~~e~l-a~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g 273 (591)
T TIGR01389 211 K---------------QKFLLDYL-KKHRGQSGIIYASSRKKVEEL-AERLESQGISALAYHAGLSNKVRAENQEDFLYD 273 (591)
T ss_pred H---------------HHHHHHHH-HhcCCCCEEEEECcHHHHHHH-HHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 0 00000011 111245567999999999999 888888899999999999999999999999999
Q ss_pred CCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHHc------c
Q psy10680 426 YINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEA------H 499 (537)
Q Consensus 426 ~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~~------~ 499 (537)
+++|||||+++++|||+|++++||+|++|.|...|.|++|||||.|..|.+++++++.|......+.+.-... +
T Consensus 274 ~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~~~~~~~~ 353 (591)
T TIGR01389 274 DVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIEQSEADDDYKQIE 353 (591)
T ss_pred CCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHhccCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998876655554321100 0
Q ss_pred ccccHHHHHHHhcCCCCChhhhhhHhhhhh
Q psy10680 500 QFVPDRLLLLAAKNKPITTRQWKREYWRRK 529 (537)
Q Consensus 500 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 529 (537)
...-..|..+.. ...|.+....+||+..
T Consensus 354 ~~~l~~~~~~~~--~~~c~r~~~~~~f~~~ 381 (591)
T TIGR01389 354 REKLRAMIAYCE--TQTCRRAYILRYFGEN 381 (591)
T ss_pred HHHHHHHHHHHc--ccccHhHHHHHhcCCC
Confidence 001112223433 3568888888888764
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.2e-40 Score=364.51 Aligned_cols=354 Identities=17% Similarity=0.212 Sum_probs=239.1
Q ss_pred eehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCcc
Q psy10680 28 IASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNV 107 (537)
Q Consensus 28 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (537)
.+++.+...+. .+|..||++|.+||+.+++|+|++++||||||||++
T Consensus 17 ~l~~~v~~~~~--~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTla------------------------------- 63 (876)
T PRK13767 17 LLRPYVREWFK--EKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLA------------------------------- 63 (876)
T ss_pred hcCHHHHHHHH--HccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHH-------------------------------
Confidence 35566666663 368899999999999999999999999999999999
Q ss_pred ccccchhhHhHhhhcCCCC-CCCCCceEEEEcccHHHHHHHHHHHHH-------hc----ccc-eeeEEEEEcCcchhHh
Q psy10680 108 VDVKYILPALYHILKMPKL-EEGDGPIALVLAPTRELAQQIQAVISI-------FS----RTM-RIRHACLYGGTSKMYQ 174 (537)
Q Consensus 108 ~~~~~~l~~l~~~~~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~ 174 (537)
|.+|++..+...... ....+.++||++|+++|+.|+.+.+.. +. ... ++++...+|+.+..++
T Consensus 64 ----a~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r 139 (876)
T PRK13767 64 ----AFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEK 139 (876)
T ss_pred ----HHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHH
Confidence 788888777643211 113467899999999999999876542 11 222 6788999999888877
Q ss_pred HHHhccCCcEEEeCCchhHHHHhcCcc--cccceeEEEecchhhhhhCCChHHHHHHHhhccccc-cccCCceeecCc--
Q psy10680 175 TRDLCRGAEIVVATPGRLIDFLESGTT--NVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRD-LCRGAEIVVATP-- 249 (537)
Q Consensus 175 ~~~l~~~~~Ivv~Tp~~l~~~l~~~~~--~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~-~~~~~~~~saTp-- 249 (537)
...+.+.++|+||||++|..++..... .+.++++||+||+|.+.+..++..+...+..+.... ...+...+|||.
T Consensus 140 ~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~ 219 (876)
T PRK13767 140 QKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP 219 (876)
T ss_pred HHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC
Confidence 777777899999999999887755432 578999999999999998777776666655444311 122234889993
Q ss_pred -hhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhcccccccee
Q psy10680 250 -GRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRIT 328 (537)
Q Consensus 250 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (537)
..+..++...............+ ..+... ...... .... .. .
T Consensus 220 ~~~va~~L~~~~~~~~~r~~~iv~-------~~~~k~--------------~~i~v~-~p~~-~l---~----------- 262 (876)
T PRK13767 220 LEEVAKFLVGYEDDGEPRDCEIVD-------ARFVKP--------------FDIKVI-SPVD-DL---I----------- 262 (876)
T ss_pred HHHHHHHhcCccccCCCCceEEEc-------cCCCcc--------------ceEEEe-ccCc-cc---c-----------
Confidence 34444443311000000000000 000000 000000 0000 00 0
Q ss_pred eeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHH-HHHhHhCceeEEEEeeccCccccccccccc------ccc
Q psy10680 329 YLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYF-WFILVAGIERWVFMEINHNGTETKHYGVSS------SLY 401 (537)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~if~~~~~~~~~l~~~~l~~------~~~ 401 (537)
......... ..... ......+...+|||+++..++.+ +..+.. .+.
T Consensus 263 -----------~~~~~~~~~---------------~l~~~L~~~i~~~~~~LVF~nTr~~ae~l-a~~L~~~~~~~~~~~ 315 (876)
T PRK13767 263 -----------HTPAEEISE---------------ALYETLHELIKEHRTTLIFTNTRSGAERV-LYNLRKRFPEEYDED 315 (876)
T ss_pred -----------ccccchhHH---------------HHHHHHHHHHhcCCCEEEEeCCHHHHHHH-HHHHHHhchhhcccc
Confidence 000000000 00000 11112345567999999988887 555543 235
Q ss_pred ccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCC-CCCceeEEEe
Q psy10680 402 RAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARS-TKTGISYTLF 480 (537)
Q Consensus 402 ~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~-~~~g~~~~l~ 480 (537)
.+..+||+|++.+|..+++.|++|+.++||||+++++|||+|++++||+++.|.+..+|+||+||+||. |..+.+.++.
T Consensus 316 ~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 316 NIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred ceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 688899999999999999999999999999999999999999999999999999999999999999986 3445555555
Q ss_pred cC
Q psy10680 481 TP 482 (537)
Q Consensus 481 ~~ 482 (537)
..
T Consensus 396 ~~ 397 (876)
T PRK13767 396 VD 397 (876)
T ss_pred cC
Confidence 44
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1e-39 Score=358.44 Aligned_cols=345 Identities=22% Similarity=0.252 Sum_probs=242.8
Q ss_pred CcceeeehhhhhhcccccCCCCCCChhhhhhhhc-cccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccc
Q psy10680 23 YINVLIASDVASRGLGKNSGYGKPTSIQAQSWPI-CLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESS 101 (537)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~-~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (537)
.++.+.+++.+...|. ..||..|+|+|.++++. +..|+|++++||||||||++
T Consensus 2 ~~~~l~lp~~~~~~l~-~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTli------------------------- 55 (737)
T PRK02362 2 KIAELPLPEGVIEFYE-AEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLI------------------------- 55 (737)
T ss_pred ChhhcCCCHHHHHHHH-hCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHH-------------------------
Confidence 3566778899999984 58999999999999988 78899999999999999999
Q ss_pred cccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccC
Q psy10680 102 WWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRG 181 (537)
Q Consensus 102 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (537)
|.+|++..+.. ++++||++|+++|+.|+.+.++.+. ..++++..++|+...... ....
T Consensus 56 ----------a~lail~~l~~--------~~kal~i~P~raLa~q~~~~~~~~~-~~g~~v~~~tGd~~~~~~---~l~~ 113 (737)
T PRK02362 56 ----------AELAMLKAIAR--------GGKALYIVPLRALASEKFEEFERFE-ELGVRVGISTGDYDSRDE---WLGD 113 (737)
T ss_pred ----------HHHHHHHHHhc--------CCcEEEEeChHHHHHHHHHHHHHhh-cCCCEEEEEeCCcCcccc---ccCC
Confidence 88888887742 5679999999999999999999764 358889999998765432 2346
Q ss_pred CcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC---chhHHHHhhh
Q psy10680 182 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT---PGRLIDFLES 258 (537)
Q Consensus 182 ~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT---p~~~~~~l~~ 258 (537)
++|+|+||+++..++.+....++++++||+||+|++.+.+++..+..++..++......+...+||| +..+..|+..
T Consensus 114 ~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~ 193 (737)
T PRK02362 114 NDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDA 193 (737)
T ss_pred CCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCC
Confidence 8999999999999988766678899999999999999888888888887766543223445589999 3455666643
Q ss_pred CCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhh
Q psy10680 259 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRM 338 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (537)
...... .....+.. .+. ....+. ... ....... ... ....
T Consensus 194 ~~~~~~-~rpv~l~~--~v~---~~~~~~----~~~-~~~~~~~----~~~-~~~~------------------------ 233 (737)
T PRK02362 194 ELVDSE-WRPIDLRE--GVF---YGGAIH----FDD-SQREVEV----PSK-DDTL------------------------ 233 (737)
T ss_pred CcccCC-CCCCCCee--eEe---cCCeec----ccc-ccccCCC----ccc-hHHH------------------------
Confidence 211100 00000000 000 000000 000 0000000 000 0000
Q ss_pred hcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccc-------------------
Q psy10680 339 LDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSS------------------- 399 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~------------------- 399 (537)
.........+...+|||.++..++.+ +..+...
T Consensus 234 ---------------------------~~~~~~~~~~~~~LVF~~sr~~~~~~-a~~L~~~~~~~~~~~~~~~~~~~~~~ 285 (737)
T PRK02362 234 ---------------------------NLVLDTLEEGGQCLVFVSSRRNAEGF-AKRAASALKKTLTAAERAELAELAEE 285 (737)
T ss_pred ---------------------------HHHHHHHHcCCCeEEEEeCHHHHHHH-HHHHHHHhhhcCCHHHHHHHHHHHHH
Confidence 00001112334455777776665544 2222111
Q ss_pred -----------------ccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE----ec-----C
Q psy10680 400 -----------------LYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN----YD-----F 453 (537)
Q Consensus 400 -----------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~----~d-----~ 453 (537)
...+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|+.++||. || .
T Consensus 286 l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~ 365 (737)
T PRK02362 286 IREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQ 365 (737)
T ss_pred HHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCce
Confidence 134566899999999999999999999999999999999999999999996 66 5
Q ss_pred CCChhhhHhhhhcccCCCCC--ceeEEEecCC
Q psy10680 454 PDNTENYVHRIGRTARSTKT--GISYTLFTPL 483 (537)
Q Consensus 454 p~s~~~~~Q~~GRagR~~~~--g~~~~l~~~~ 483 (537)
|.+..+|.||+|||||.|.. |.+++++.+.
T Consensus 366 ~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 366 PIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred eCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 78899999999999999875 8888888764
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.2e-38 Score=334.23 Aligned_cols=348 Identities=20% Similarity=0.235 Sum_probs=259.3
Q ss_pred eehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCcc
Q psy10680 28 IASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNV 107 (537)
Q Consensus 28 ~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (537)
.+++.+++.+..+ |..||+.|.+||+.+.+|+|+++.||||||||++
T Consensus 7 ~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeA------------------------------- 53 (814)
T COG1201 7 ILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEA------------------------------- 53 (814)
T ss_pred hcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHH-------------------------------
Confidence 4567788888543 8999999999999999999999999999999999
Q ss_pred ccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEe
Q psy10680 108 VDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVA 187 (537)
Q Consensus 108 ~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~ 187 (537)
..+|++..+......+...+-.+|||.|.++|.+++.+.+......+|+.+..-+|+++..+......+.++|+|+
T Consensus 54 ----AfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiT 129 (814)
T COG1201 54 ----AFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILIT 129 (814)
T ss_pred ----HHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEe
Confidence 8888898888774223334678999999999999999999999999999999999999999888888899999999
Q ss_pred CCchhHHHHhcCc--ccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC---chhHHHHhhhCCcc
Q psy10680 188 TPGRLIDFLESGT--TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT---PGRLIDFLESGTTN 262 (537)
Q Consensus 188 Tp~~l~~~l~~~~--~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT---p~~~~~~l~~~~~~ 262 (537)
|||.|.-+|.... ..+.++++||+||+|.+.+...+.++.--+..+.......+...+||| |.....|+.....
T Consensus 130 TPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~- 208 (814)
T COG1201 130 TPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGD- 208 (814)
T ss_pred ChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCC-
Confidence 9999998886543 368999999999999999887777776666555442112233389999 6777777765321
Q ss_pred cccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCC
Q psy10680 263 VNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMG 342 (537)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (537)
............. ++.-+... ...... ........
T Consensus 209 --~~~Iv~~~~~k~~-------~i~v~~p~-------~~~~~~-~~~~~~~~---------------------------- 243 (814)
T COG1201 209 --PCEIVDVSAAKKL-------EIKVISPV-------EDLIYD-EELWAALY---------------------------- 243 (814)
T ss_pred --ceEEEEcccCCcc-------eEEEEecC-------Cccccc-cchhHHHH----------------------------
Confidence 0111110000000 00000000 000000 00000000
Q ss_pred ChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccc-cccccccCCCCHHHHHHHHHH
Q psy10680 343 FEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSL-YRAMGIHGDKSQWNRDQTLRD 421 (537)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~ 421 (537)
. ............+||++++..++.+ ...|...+ ..+..+||+++.+.|..++++
T Consensus 244 -----~------------------~i~~~v~~~~ttLIF~NTR~~aE~l-~~~L~~~~~~~i~~HHgSlSre~R~~vE~~ 299 (814)
T COG1201 244 -----E------------------RIAELVKKHRTTLIFTNTRSGAERL-AFRLKKLGPDIIEVHHGSLSRELRLEVEER 299 (814)
T ss_pred -----H------------------HHHHHHhhcCcEEEEEeChHHHHHH-HHHHHHhcCCceeeecccccHHHHHHHHHH
Confidence 0 0001111222344999999999999 66666555 788889999999999999999
Q ss_pred HhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCC-CCceeEEEecC
Q psy10680 422 FRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARST-KTGISYTLFTP 482 (537)
Q Consensus 422 f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~-~~g~~~~l~~~ 482 (537)
|++|+.+.+|||+.++-|||+.+++.||+++.|++...++||+||+|+.- ....++++..+
T Consensus 300 lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 300 LKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999999999999999999999999853 44677777666
No 44
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-37 Score=303.05 Aligned_cols=388 Identities=18% Similarity=0.171 Sum_probs=244.5
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.++.||.......+.+ |.+++.|||-|||++ .++-+...+...
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~I-----------------------------------A~~V~~~~l~~~- 57 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFI-----------------------------------AAMVIANRLRWF- 57 (542)
T ss_pred cHHHHHHHHHHHHhhc-CeEEEecCCccHHHH-----------------------------------HHHHHHHHHHhc-
Confidence 7889999988777764 999999999999998 666666666554
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCccccc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVN 204 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~ 204 (537)
++++|+++||+.|+.|++..++.+..-..-.+..++|....+++...+ ...+|+|+||+.+.|.+..+.+++.
T Consensus 58 ------~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~ 130 (542)
T COG1111 58 ------GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLD 130 (542)
T ss_pred ------CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChH
Confidence 348999999999999999999988876667789999998887665544 5689999999999999999999999
Q ss_pred ceeEEEecchhhhhhCCChHHHHH-HHhhccccccccCCceeecCchhH----HHHhhhCCcccccceeeeccchh----
Q psy10680 205 RITYLVLDEADRMLDMGFEPQIRK-IIQMTRTRDLCRGAEIVVATPGRL----IDFLESGTTNVNRITYLVLDEAD---- 275 (537)
Q Consensus 205 ~l~liV~DE~h~~~~~~~~~~l~~-il~~~~~~~~~~~~~~~saTp~~~----~~~l~~~~~~~~~~~~~~~~~~~---- 275 (537)
++.++||||||+.........+.+ .+......... .++|||+.- ...+++. .+..+.....+..+
T Consensus 131 dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~il----gLTASPGs~~ekI~eV~~nL--gIe~vevrTE~d~DV~~Y 204 (542)
T COG1111 131 DVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLIL----GLTASPGSDLEKIQEVVENL--GIEKVEVRTEEDPDVRPY 204 (542)
T ss_pred HceEEEechhhhccCcchHHHHHHHHHHhccCceEE----EEecCCCCCHHHHHHHHHhC--CcceEEEecCCCccHHHh
Confidence 999999999999877655544444 33333333444 788886443 3333332 22223222222111
Q ss_pred ------hhhcCCChHHH-----------HHHHHhhhcCCCccccee-ehhhhHHHHHHHHhhcccccccee---------
Q psy10680 276 ------RMLDMGFEPQI-----------RKIIQMTRHAHPVVPVSL-FISERRDTILHFLESGTTNVNRIT--------- 328 (537)
Q Consensus 276 ------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------- 328 (537)
++......+.+ ...........-....+. ...+........+...........
T Consensus 205 v~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~ 284 (542)
T COG1111 205 VKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEA 284 (542)
T ss_pred hccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHH
Confidence 01111111111 111111111111111110 000000000000010011000000
Q ss_pred -----------eeecchhhhhhc----CCCh-hH--HHHHhhhcc-----------------ccceeechhhHHHHHHhH
Q psy10680 329 -----------YLVLDEADRMLD----MGFE-PQ--IRKIIQMTR-----------------FNTCVFLGYVLYFWFILV 373 (537)
Q Consensus 329 -----------~~~~~~~~~~~~----~~~~-~~--~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 373 (537)
....+.....+. .... .. ...+..... -.....+...+...+...
T Consensus 285 ~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~ 364 (542)
T COG1111 285 IKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKN 364 (542)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcC
Confidence 000000000000 0000 00 000000000 001111122222333334
Q ss_pred hCceeEEEEeeccCccccccccccccccccc---------cccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCC
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLYRAM---------GIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVED 444 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~---------~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~ 444 (537)
.+.+.+||.+.+.+++.+ ...|...++.+. ....||++++|.++++.|+.|++++||||++.++|+|+|+
T Consensus 365 ~~~RvIVFT~yRdTae~i-~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~ 443 (542)
T COG1111 365 GDSRVIVFTEYRDTAEEI-VNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPE 443 (542)
T ss_pred CCceEEEEehhHhHHHHH-HHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCc
Confidence 557889999999999998 777777776663 2236899999999999999999999999999999999999
Q ss_pred ccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 445 IKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 445 ~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
+++||+|++..|+..++||.||+||. ..|.+++++....
T Consensus 444 vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 444 VDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred ccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 99999999999999999999999997 8899999998863
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-37 Score=340.52 Aligned_cols=340 Identities=18% Similarity=0.238 Sum_probs=236.4
Q ss_pred cceeeehhhhhhcccccCCCCCCChhhhhhhhc-cccCCcEEEEccCCCccccccccccchhccccccCCCCCccccccc
Q psy10680 24 INVLIASDVASRGLGKNSGYGKPTSIQAQSWPI-CLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSW 102 (537)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~-~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (537)
+..+.+++.+.+.+. ..||..|+++|.++++. +.+|+|+++++|||||||++
T Consensus 3 ~~~l~l~~~~~~~l~-~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~-------------------------- 55 (720)
T PRK00254 3 VDELRVDERIKRVLK-ERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLV-------------------------- 55 (720)
T ss_pred HHHcCCCHHHHHHHH-hCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHH--------------------------
Confidence 456678889999985 58999999999999985 88999999999999999999
Q ss_pred ccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCC
Q psy10680 103 WNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGA 182 (537)
Q Consensus 103 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (537)
|.+|++..+... ++++|||+|+++|+.|+++.++.+. ..++++..++|+...... ...++
T Consensus 56 ---------~~l~il~~l~~~-------~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~ 115 (720)
T PRK00254 56 ---------AEIVMVNKLLRE-------GGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKY 115 (720)
T ss_pred ---------HHHHHHHHHHhc-------CCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccC
Confidence 788888777542 5679999999999999999998753 468899999998765432 23568
Q ss_pred cEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC---chhHHHHhhhC
Q psy10680 183 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT---PGRLIDFLESG 259 (537)
Q Consensus 183 ~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT---p~~~~~~l~~~ 259 (537)
+|+|+||+++..++.+....++++++||+||+|.+.+.+++..+..++..+... .+..++||| +..+..|+...
T Consensus 116 ~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~---~qiI~lSATl~n~~~la~wl~~~ 192 (720)
T PRK00254 116 DIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGR---AQILGLSATVGNAEELAEWLNAE 192 (720)
T ss_pred CEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcC---CcEEEEEccCCCHHHHHHHhCCc
Confidence 999999999999988777778999999999999999888888888888776531 344588999 34555555431
Q ss_pred CcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhh
Q psy10680 260 TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRML 339 (537)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (537)
..... .....+.. .+...++. ... ... ...+.......+.
T Consensus 193 ~~~~~-~rpv~l~~--~~~~~~~~-----~~~-----~~~--~~~~~~~~~~~~~------------------------- 232 (720)
T PRK00254 193 LVVSD-WRPVKLRK--GVFYQGFL-----FWE-----DGK--IERFPNSWESLVY------------------------- 232 (720)
T ss_pred cccCC-CCCCccee--eEecCCee-----ecc-----Ccc--hhcchHHHHHHHH-------------------------
Confidence 11000 00000000 00000000 000 000 0000000000000
Q ss_pred cCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccc----------------------
Q psy10680 340 DMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVS---------------------- 397 (537)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~---------------------- 397 (537)
.....+...+|||.+++.++.+ +..+.
T Consensus 233 ------------------------------~~i~~~~~vLVF~~sr~~~~~~-a~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (720)
T PRK00254 233 ------------------------------DAVKKGKGALVFVNTRRSAEKE-ALELAKKIKRFLTKPELRALKELADSL 281 (720)
T ss_pred ------------------------------HHHHhCCCEEEEEcChHHHHHH-HHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 0011233344666655554332 11110
Q ss_pred -----------ccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE-------ecCCC-Chh
Q psy10680 398 -----------SSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN-------YDFPD-NTE 458 (537)
Q Consensus 398 -----------~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~-------~d~p~-s~~ 458 (537)
.....+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|+.++||. ++.|. +..
T Consensus 282 ~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~ 361 (720)
T PRK00254 282 EENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVL 361 (720)
T ss_pred hcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHH
Confidence 11234677999999999999999999999999999999999999999999984 44433 467
Q ss_pred hhHhhhhcccCCC--CCceeEEEecCCC
Q psy10680 459 NYVHRIGRTARST--KTGISYTLFTPLN 484 (537)
Q Consensus 459 ~~~Q~~GRagR~~--~~g~~~~l~~~~~ 484 (537)
+|+||+|||||.| ..|.+++++.+.+
T Consensus 362 ~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 362 EIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999999975 5689998887654
No 46
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4e-37 Score=314.83 Aligned_cols=368 Identities=20% Similarity=0.265 Sum_probs=263.0
Q ss_pred hcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchh
Q psy10680 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYIL 114 (537)
Q Consensus 35 ~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (537)
..|.+.+||...++-|.++|..+++|+++++.+|||+|||++ |.+
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlC-----------------------------------yQi 51 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLC-----------------------------------YQI 51 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchH-----------------------------------hhh
Confidence 345566899999999999999999999999999999999999 888
Q ss_pred hHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh---c-cCCcEEEeCCc
Q psy10680 115 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL---C-RGAEIVVATPG 190 (537)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~~Ivv~Tp~ 190 (537)
|++-. .+.+|||.|..+|...+.+.++.. |+....++...+.+++...+ . ...+++.-+||
T Consensus 52 PAll~-----------~G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPE 116 (590)
T COG0514 52 PALLL-----------EGLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPE 116 (590)
T ss_pred HHHhc-----------CCCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECch
Confidence 88765 335899999999999888888643 57778887776766554443 2 24799999999
Q ss_pred hhHHHHhcCcccccceeEEEecchhhhhhCC--ChHHHHHHHhhccccccccCCceeecC-chhHHHHhhhCCcccccce
Q psy10680 191 RLIDFLESGTTNVNRITYLVLDEADRMLDMG--FEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESGTTNVNRIT 267 (537)
Q Consensus 191 ~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~--~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~~~~~~~~~~~ 267 (537)
++.+-.....+.-.++.+++|||||+++.|+ |++.+..+-......+ ...+..++|| +..+...+.. .+..
T Consensus 117 rl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~-~L~l---- 190 (590)
T COG0514 117 RLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIRE-QLGL---- 190 (590)
T ss_pred hhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHH-HhcC----
Confidence 9875332223346678899999999999996 8888877765544321 1222277888 4444333322 1111
Q ss_pred eeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHH
Q psy10680 268 YLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQI 347 (537)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (537)
..+..+.....++.+...+.... .....+. ++..
T Consensus 191 ----~~~~~~~~sfdRpNi~~~v~~~~-------------~~~~q~~-fi~~---------------------------- 224 (590)
T COG0514 191 ----QDANIFRGSFDRPNLALKVVEKG-------------EPSDQLA-FLAT---------------------------- 224 (590)
T ss_pred ----CCcceEEecCCCchhhhhhhhcc-------------cHHHHHH-HHHh----------------------------
Confidence 11111111111112211111100 0000000 1100
Q ss_pred HHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCC
Q psy10680 348 RKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYI 427 (537)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 427 (537)
.....+..+||||.++..++.+ +..|...|+++..+|+||+..+|..+.+.|..++.
T Consensus 225 ----------------------~~~~~~~~GIIYc~sRk~~E~i-a~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~ 281 (590)
T COG0514 225 ----------------------VLPQLSKSGIIYCLTRKKVEEL-AEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEI 281 (590)
T ss_pred ----------------------hccccCCCeEEEEeeHHhHHHH-HHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCC
Confidence 0112234467999999999999 99999999999999999999999999999999999
Q ss_pred cEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH------cccc
Q psy10680 428 NVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE------AHQF 501 (537)
Q Consensus 428 ~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~------~~~~ 501 (537)
+|+|||.++++|||.|++++|||||.|.|..+|.|-+|||||.|....+++++.+.|......+++.... .+..
T Consensus 282 ~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~~~~~~~~~~~ 361 (590)
T COG0514 282 KVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKPDEEQKQIELA 361 (590)
T ss_pred cEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998877777666421 1111
Q ss_pred ccHHHHHHHhcCCCCChhhhhhHhhhhh
Q psy10680 502 VPDRLLLLAAKNKPITTRQWKREYWRRK 529 (537)
Q Consensus 502 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 529 (537)
--..|..+++... |.+.--.+||+..
T Consensus 362 kl~~~~~~~e~~~--crr~~ll~yfge~ 387 (590)
T COG0514 362 KLRQMIAYCETQT--CRRLVLLKYFGED 387 (590)
T ss_pred HHHHHHHhccccc--chHHHHHHhcCcc
Confidence 1222333444333 7777788888865
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.5e-36 Score=332.62 Aligned_cols=319 Identities=19% Similarity=0.211 Sum_probs=224.3
Q ss_pred hhhhhhcccccCCCCCCChhhhhhhhccccC------CcEEEEccCCCccccccccccchhccccccCCCCCcccccccc
Q psy10680 30 SDVASRGLGKNSGYGKPTSIQAQSWPICLSG------RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWW 103 (537)
Q Consensus 30 ~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~------~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (537)
.......+.+.++| .||++|.+||+.+.++ ++.+++||||+|||.+
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~v--------------------------- 488 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEV--------------------------- 488 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHH---------------------------
Confidence 34455666667889 6999999999999875 6999999999999999
Q ss_pred cCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHH---Hhcc
Q psy10680 104 NNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTR---DLCR 180 (537)
Q Consensus 104 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~ 180 (537)
|+++++..+.. +++++|++||++|+.|+++.++.++...++++..++|+....++.. .+..
T Consensus 489 --------al~a~l~al~~--------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~ 552 (926)
T TIGR00580 489 --------AMRAAFKAVLD--------GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS 552 (926)
T ss_pred --------HHHHHHHHHHh--------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc
Confidence 77787777643 5679999999999999999999988888889989988776444332 3333
Q ss_pred -CCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCc-hhHHHHhhh
Q psy10680 181 -GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATP-GRLIDFLES 258 (537)
Q Consensus 181 -~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp-~~~~~~l~~ 258 (537)
.++||||||.. + ...+.+.++++||+||+|++. ......+..++. ..++.++|||| ++.......
T Consensus 553 g~~dIVIGTp~l----l-~~~v~f~~L~llVIDEahrfg-----v~~~~~L~~~~~---~~~vL~~SATpiprtl~~~l~ 619 (926)
T TIGR00580 553 GKIDILIGTHKL----L-QKDVKFKDLGLLIIDEEQRFG-----VKQKEKLKELRT---SVDVLTLSATPIPRTLHMSMS 619 (926)
T ss_pred CCceEEEchHHH----h-hCCCCcccCCEEEeecccccc-----hhHHHHHHhcCC---CCCEEEEecCCCHHHHHHHHh
Confidence 58999999943 2 345678999999999999953 233344433322 12334899995 333322111
Q ss_pred CCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhh-hHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 259 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISE-RRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
.... ...+...... ..+...+... ....+..
T Consensus 620 g~~d---~s~I~~~p~~-----------------------R~~V~t~v~~~~~~~i~~---------------------- 651 (926)
T TIGR00580 620 GIRD---LSIIATPPED-----------------------RLPVRTFVMEYDPELVRE---------------------- 651 (926)
T ss_pred cCCC---cEEEecCCCC-----------------------ccceEEEEEecCHHHHHH----------------------
Confidence 1100 0000000000 0000000000 0000000
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccc--ccccccccCCCCHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSS--LYRAMGIHGDKSQWNR 415 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~~~~r 415 (537)
........+...++||.....++.+ ...+... +.++..+||+|+..+|
T Consensus 652 -----------------------------~i~~el~~g~qv~if~n~i~~~e~l-~~~L~~~~p~~~v~~lHG~m~~~eR 701 (926)
T TIGR00580 652 -----------------------------AIRRELLRGGQVFYVHNRIESIEKL-ATQLRELVPEARIAIAHGQMTENEL 701 (926)
T ss_pred -----------------------------HHHHHHHcCCeEEEEECCcHHHHHH-HHHHHHhCCCCeEEEecCCCCHHHH
Confidence 0001122344556888888777776 5555553 5788899999999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCC-ChhhhHhhhhcccCCCCCceeEEEecCC
Q psy10680 416 DQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD-NTENYVHRIGRTARSTKTGISYTLFTPL 483 (537)
Q Consensus 416 ~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~-s~~~~~Q~~GRagR~~~~g~~~~l~~~~ 483 (537)
..+++.|++|+.+|||||+++++|+|+|++++||+++.|. +...|.||+||+||.|+.|.|++++.+.
T Consensus 702 e~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 702 EEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred HHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999999999999999999999999999999875 5678999999999999999999998764
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.7e-36 Score=324.74 Aligned_cols=320 Identities=21% Similarity=0.257 Sum_probs=217.9
Q ss_pred hhhhhcccccCCCCCCChhhhhhhhccccC------CcEEEEccCCCccccccccccchhccccccCCCCCccccccccc
Q psy10680 31 DVASRGLGKNSGYGKPTSIQAQSWPICLSG------RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWN 104 (537)
Q Consensus 31 ~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~------~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (537)
......+.+.++| .||++|.+|++.+.++ ++++++||||||||++
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~v---------------------------- 298 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVV---------------------------- 298 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHH----------------------------
Confidence 3444556567788 7999999999999877 4899999999999999
Q ss_pred CccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhH---HHhcc-
Q psy10680 105 NNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQT---RDLCR- 180 (537)
Q Consensus 105 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~- 180 (537)
|++|++..+.. |.+++|++||++|+.|+++.++.++...++++..++|+.+..+.. ..+..
T Consensus 299 -------a~~~il~~~~~--------g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g 363 (681)
T PRK10917 299 -------AALAALAAIEA--------GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG 363 (681)
T ss_pred -------HHHHHHHHHHc--------CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC
Confidence 78888777643 667999999999999999999999988899999999998754433 33333
Q ss_pred CCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCch-hHHHHhhhC
Q psy10680 181 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPG-RLIDFLESG 259 (537)
Q Consensus 181 ~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~-~~~~~l~~~ 259 (537)
.++|+||||+.+.. .+.+.++++||+||+|++... .+..+..... .....++||||. +........
T Consensus 364 ~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~-----qr~~l~~~~~---~~~iL~~SATp~prtl~~~~~g 430 (681)
T PRK10917 364 EADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE-----QRLALREKGE---NPHVLVMTATPIPRTLAMTAYG 430 (681)
T ss_pred CCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH-----HHHHHHhcCC---CCCEEEEeCCCCHHHHHHHHcC
Confidence 58999999976642 356789999999999996432 2222222111 133448999953 222211110
Q ss_pred CcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhh
Q psy10680 260 TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRML 339 (537)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (537)
...+. .+++. .................+.+...+
T Consensus 431 ~~~~s-----~i~~~-------------------p~~r~~i~~~~~~~~~~~~~~~~i---------------------- 464 (681)
T PRK10917 431 DLDVS-----VIDEL-------------------PPGRKPITTVVIPDSRRDEVYERI---------------------- 464 (681)
T ss_pred CCceE-----EEecC-------------------CCCCCCcEEEEeCcccHHHHHHHH----------------------
Confidence 10000 00000 000000000000000011111111
Q ss_pred cCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcc--------cccccccccc--ccccccccCC
Q psy10680 340 DMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGT--------ETKHYGVSSS--LYRAMGIHGD 409 (537)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~--------~l~~~~l~~~--~~~~~~~~~~ 409 (537)
......+...+|||......+ .. ...+... ++++..+||+
T Consensus 465 -----------------------------~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~-~~~L~~~~~~~~v~~lHG~ 514 (681)
T PRK10917 465 -----------------------------REEIAKGRQAYVVCPLIEESEKLDLQSAEET-YEELQEAFPELRVGLLHGR 514 (681)
T ss_pred -----------------------------HHHHHcCCcEEEEEcccccccchhHHHHHHH-HHHHHHHCCCCcEEEEeCC
Confidence 011123445557776443322 22 2222222 3678889999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCC-ChhhhHhhhhcccCCCCCceeEEEecCC
Q psy10680 410 KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD-NTENYVHRIGRTARSTKTGISYTLFTPL 483 (537)
Q Consensus 410 ~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~-s~~~~~Q~~GRagR~~~~g~~~~l~~~~ 483 (537)
|+..+|..++++|++|+.+|||||+++++|+|+|++++||+++.|. ....+.|++||+||.|..|.|++++...
T Consensus 515 m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 515 MKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 9999999999999999999999999999999999999999999987 5678889999999999999999999644
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.5e-35 Score=318.80 Aligned_cols=336 Identities=18% Similarity=0.249 Sum_probs=220.3
Q ss_pred hhhhcccccCCCCCCChhhhhhhhccccC------CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccC
Q psy10680 32 VASRGLGKNSGYGKPTSIQAQSWPICLSG------RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNN 105 (537)
Q Consensus 32 ~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~------~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (537)
.....+.+.++| .||+.|.+|++.+.++ ++.+++||||||||.+
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~v----------------------------- 272 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLV----------------------------- 272 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHH-----------------------------
Confidence 334445567888 8999999999999876 3689999999999999
Q ss_pred ccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhH---HHhc-cC
Q psy10680 106 NVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQT---RDLC-RG 181 (537)
Q Consensus 106 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~-~~ 181 (537)
|++|++..+.. |.+++|++||++|+.|+++.++.++...++++..++|+....+.. ..+. ..
T Consensus 273 ------a~l~il~~~~~--------g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~ 338 (630)
T TIGR00643 273 ------AALAMLAAIEA--------GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ 338 (630)
T ss_pred ------HHHHHHHHHHc--------CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC
Confidence 77887776643 567999999999999999999999888899999999998765532 2332 35
Q ss_pred CcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCch-hHHHHhhhCC
Q psy10680 182 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPG-RLIDFLESGT 260 (537)
Q Consensus 182 ~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~-~~~~~l~~~~ 260 (537)
++|+|+||..+.. ...+.++++||+||+|++.... ...+...... .......++||||. +.........
T Consensus 339 ~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~q----r~~l~~~~~~-~~~~~~l~~SATp~prtl~l~~~~~ 408 (630)
T TIGR00643 339 IHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQ----RKKLREKGQG-GFTPHVLVMSATPIPRTLALTVYGD 408 (630)
T ss_pred CCEEEecHHHHhc-----cccccccceEEEechhhccHHH----HHHHHHhccc-CCCCCEEEEeCCCCcHHHHHHhcCC
Confidence 8999999976643 3567899999999999964321 1222222220 01223448999953 2222111000
Q ss_pred cccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhc
Q psy10680 261 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLD 340 (537)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (537)
.... .++.. .................+.+...+
T Consensus 409 l~~~-----~i~~~-------------------p~~r~~i~~~~~~~~~~~~~~~~i----------------------- 441 (630)
T TIGR00643 409 LDTS-----IIDEL-------------------PPGRKPITTVLIKHDEKDIVYEFI----------------------- 441 (630)
T ss_pred ccee-----eeccC-------------------CCCCCceEEEEeCcchHHHHHHHH-----------------------
Confidence 0000 00000 000000000000000000111100
Q ss_pred CCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcc--------ccccccccc--cccccccccCCC
Q psy10680 341 MGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGT--------ETKHYGVSS--SLYRAMGIHGDK 410 (537)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~--------~l~~~~l~~--~~~~~~~~~~~~ 410 (537)
......+...++||......+ .+ ...+.. .++++..+||+|
T Consensus 442 ----------------------------~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~-~~~L~~~~~~~~v~~lHG~m 492 (630)
T TIGR00643 442 ----------------------------EEEIAKGRQAYVVYPLIEESEKLDLKAAEAL-YERLKKAFPKYNVGLLHGRM 492 (630)
T ss_pred ----------------------------HHHHHhCCcEEEEEccccccccchHHHHHHH-HHHHHhhCCCCcEEEEeCCC
Confidence 011122334446665433221 22 222222 356788899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCC-ChhhhHhhhhcccCCCCCceeEEEecCCCcchHH
Q psy10680 411 SQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD-NTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQ 489 (537)
Q Consensus 411 ~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~-s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~ 489 (537)
+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|. +...|.|++||+||.|..|.|++++.+.......
T Consensus 493 ~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~ 572 (630)
T TIGR00643 493 KSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAK 572 (630)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHH
Confidence 999999999999999999999999999999999999999999986 5778889999999999999999999544333333
Q ss_pred HHHHHHHH
Q psy10680 490 DLIDILNE 497 (537)
Q Consensus 490 ~~~~~l~~ 497 (537)
+-++.+.+
T Consensus 573 ~rl~~~~~ 580 (630)
T TIGR00643 573 KRLRVMAD 580 (630)
T ss_pred HHHHHHHh
Confidence 33444443
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.5e-36 Score=327.42 Aligned_cols=336 Identities=19% Similarity=0.186 Sum_probs=228.2
Q ss_pred cceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccc
Q psy10680 24 INVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWW 103 (537)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (537)
+..+.+++.+.+.+. ..+|. ++++|.++++.+.+|+++++++|||||||++
T Consensus 3 ~~~~~l~~~~~~~~~-~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~--------------------------- 53 (674)
T PRK01172 3 ISDLGYDDEFLNLFT-GNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLI--------------------------- 53 (674)
T ss_pred HhhcCCCHHHHHHHh-hCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHH---------------------------
Confidence 345667888888884 47885 9999999999999999999999999999999
Q ss_pred cCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCc
Q psy10680 104 NNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAE 183 (537)
Q Consensus 104 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (537)
+.++++..+.. ++++||++|+++|+.|+++.++.+. ..+.++....|+...... ..+.++
T Consensus 54 --------a~lail~~l~~--------~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~d 113 (674)
T PRK01172 54 --------AYSAIYETFLA--------GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYD 113 (674)
T ss_pred --------HHHHHHHHHHh--------CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCC
Confidence 77777776643 4569999999999999999998753 457888888887654322 224689
Q ss_pred EEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCch---hHHHHhhhCC
Q psy10680 184 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPG---RLIDFLESGT 260 (537)
Q Consensus 184 Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~---~~~~~l~~~~ 260 (537)
|+|+||+++..++.+....+.++++||+||+|++.+..++..+..++..++......+...+|||.. .+..|+....
T Consensus 114 Iiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~ 193 (674)
T PRK01172 114 VVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLNASL 193 (674)
T ss_pred EEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCc
Confidence 9999999999988877677899999999999999988888888888766543322334458899943 3344443211
Q ss_pred cccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhc
Q psy10680 261 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLD 340 (537)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (537)
.... .. ..+........... .. +....
T Consensus 194 ~~~~-~r-------------------------------~vpl~~~i~~~~~~---~~---------------~~~~~--- 220 (674)
T PRK01172 194 IKSN-FR-------------------------------PVPLKLGILYRKRL---IL---------------DGYER--- 220 (674)
T ss_pred cCCC-CC-------------------------------CCCeEEEEEecCee---ee---------------ccccc---
Confidence 1000 00 00000000000000 00 00000
Q ss_pred CCChhHHHHHhhhccccceeechhhHHH-HHHhHhCceeEEEEeeccCcccccccccccc--------------------
Q psy10680 341 MGFEPQIRKIIQMTRFNTCVFLGYVLYF-WFILVAGIERWVFMEINHNGTETKHYGVSSS-------------------- 399 (537)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~-------------------- 399 (537)
. .. ..... ......+...+|||.++..++.+ +..+...
T Consensus 221 --~--------------~~----~~~~~i~~~~~~~~~vLVF~~sr~~~~~~-a~~L~~~~~~~~~~~~~~~~~~~~~~~ 279 (674)
T PRK01172 221 --S--------------QV----DINSLIKETVNDGGQVLVFVSSRKNAEDY-AEMLIQHFPEFNDFKVSSENNNVYDDS 279 (674)
T ss_pred --c--------------cc----cHHHHHHHHHhCCCcEEEEeccHHHHHHH-HHHHHHhhhhcccccccccccccccHH
Confidence 0 00 00000 00112234445666666655544 2222111
Q ss_pred -----ccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecC---------CCChhhhHhhhh
Q psy10680 400 -----LYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF---------PDNTENYVHRIG 465 (537)
Q Consensus 400 -----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~---------p~s~~~~~Q~~G 465 (537)
...+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|+.. ||+.|. |.+..+|.||+|
T Consensus 280 L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~G 358 (674)
T PRK01172 280 LNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIG 358 (674)
T ss_pred HHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhh
Confidence 12355689999999999999999999999999999999999999864 444442 457889999999
Q ss_pred cccCCCC--CceeEEEecCC
Q psy10680 466 RTARSTK--TGISYTLFTPL 483 (537)
Q Consensus 466 RagR~~~--~g~~~~l~~~~ 483 (537)
||||.|. .|.+++++...
T Consensus 359 RAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 359 RAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred cCCCCCCCCcceEEEEecCc
Confidence 9999985 56677776654
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1e-34 Score=324.79 Aligned_cols=318 Identities=20% Similarity=0.181 Sum_probs=219.1
Q ss_pred hhhhcccccCCCCCCChhhhhhhhccccC------CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccC
Q psy10680 32 VASRGLGKNSGYGKPTSIQAQSWPICLSG------RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNN 105 (537)
Q Consensus 32 ~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~------~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (537)
.....+.+.++| .||+.|.+||+.+.++ +|++++||||+|||.+
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~v----------------------------- 637 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV----------------------------- 637 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHH-----------------------------
Confidence 444555567888 8999999999999987 7999999999999998
Q ss_pred ccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh---c-cC
Q psy10680 106 NVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL---C-RG 181 (537)
Q Consensus 106 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~ 181 (537)
++.++...+.. +++++||+||++|+.|+++.++..+...++++..++++.+..++...+ . ..
T Consensus 638 ------al~aa~~~~~~--------g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~ 703 (1147)
T PRK10689 638 ------AMRAAFLAVEN--------HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK 703 (1147)
T ss_pred ------HHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC
Confidence 66666555432 677999999999999999999987777788888888887766655443 2 36
Q ss_pred CcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCc-hhHHHHhhhCC
Q psy10680 182 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATP-GRLIDFLESGT 260 (537)
Q Consensus 182 ~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp-~~~~~~l~~~~ 260 (537)
++|+||||+.+ . ..+.+.+++++|+||+|++.. .....+..++. ..++.++|||| .+.........
T Consensus 704 ~dIVVgTp~lL----~-~~v~~~~L~lLVIDEahrfG~-----~~~e~lk~l~~---~~qvLl~SATpiprtl~l~~~gl 770 (1147)
T PRK10689 704 IDILIGTHKLL----Q-SDVKWKDLGLLIVDEEHRFGV-----RHKERIKAMRA---DVDILTLTATPIPRTLNMAMSGM 770 (1147)
T ss_pred CCEEEECHHHH----h-CCCCHhhCCEEEEechhhcch-----hHHHHHHhcCC---CCcEEEEcCCCCHHHHHHHHhhC
Confidence 89999999643 2 345678999999999999732 12233333322 23344999995 44433322211
Q ss_pred cccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhc
Q psy10680 261 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLD 340 (537)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (537)
... ..+....... .+............
T Consensus 771 ~d~---~~I~~~p~~r-----------------------~~v~~~~~~~~~~~--------------------------- 797 (1147)
T PRK10689 771 RDL---SIIATPPARR-----------------------LAVKTFVREYDSLV--------------------------- 797 (1147)
T ss_pred CCc---EEEecCCCCC-----------------------CCceEEEEecCcHH---------------------------
Confidence 110 0000000000 00000000000000
Q ss_pred CCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccc--ccccccccCCCCHHHHHHH
Q psy10680 341 MGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSS--LYRAMGIHGDKSQWNRDQT 418 (537)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~~~~r~~~ 418 (537)
. ..........+...++||++...++.+ ...+... +.++..+||+|+..+|..+
T Consensus 798 -----~------------------k~~il~el~r~gqv~vf~n~i~~ie~l-a~~L~~~~p~~~v~~lHG~m~q~eRe~i 853 (1147)
T PRK10689 798 -----V------------------REAILREILRGGQVYYLYNDVENIQKA-AERLAELVPEARIAIGHGQMRERELERV 853 (1147)
T ss_pred -----H------------------HHHHHHHHhcCCeEEEEECCHHHHHHH-HHHHHHhCCCCcEEEEeCCCCHHHHHHH
Confidence 0 000011112334556888887776666 5555554 5678889999999999999
Q ss_pred HHHHhcCCCcEEEEecccccCCCcCCccEEEEecCC-CChhhhHhhhhcccCCCCCceeEEEecCC
Q psy10680 419 LRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFP-DNTENYVHRIGRTARSTKTGISYTLFTPL 483 (537)
Q Consensus 419 ~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p-~s~~~~~Q~~GRagR~~~~g~~~~l~~~~ 483 (537)
+.+|++|+.+|||||+++++|+|+|++++||..+.+ .+...|.||+||+||.|+.|.|++++.+.
T Consensus 854 m~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 854 MNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred HHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 999999999999999999999999999999966543 35667999999999999999999888654
No 52
>KOG0354|consensus
Probab=100.00 E-value=6.4e-34 Score=294.45 Aligned_cols=391 Identities=21% Similarity=0.213 Sum_probs=234.1
Q ss_pred CCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcC
Q psy10680 44 GKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKM 123 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 123 (537)
..+++||.+.....+ |+|+||++|||+|||++ .+..++.++...
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfI-----------------------------------Aa~Vm~nh~rw~ 104 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFI-----------------------------------AAVIMKNHFEWR 104 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccch-----------------------------------HHHHHHHHHhcC
Confidence 388999999998888 99999999999999999 777788887665
Q ss_pred CCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCccc-
Q psy10680 124 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTN- 202 (537)
Q Consensus 124 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~- 202 (537)
+ ++++||++|++.|+.|+...+..++.. ..+....|+.........+.+..+|+|+||+.+.+.|.++...
T Consensus 105 p------~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ 176 (746)
T KOG0354|consen 105 P------KGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE 176 (746)
T ss_pred C------cceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc
Confidence 4 578999999999999999777766554 4555555664433333456678899999999999999876554
Q ss_pred ccceeEEEecchhhhhhCCChHHHH-HHHhhcccc-ccccCCceeecCchhH----HHHhhhCCcccccceeee-ccch-
Q psy10680 203 VNRITYLVLDEADRMLDMGFEPQIR-KIIQMTRTR-DLCRGAEIVVATPGRL----IDFLESGTTNVNRITYLV-LDEA- 274 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~~~~~~~l~-~il~~~~~~-~~~~~~~~~saTp~~~----~~~l~~~~~~~~~~~~~~-~~~~- 274 (537)
++.+.++||||||+.........++ .++..-... +.+ .++|||+.- .+.+.+....+....... ....
T Consensus 177 ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qIL----gLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~ 252 (746)
T KOG0354|consen 177 LSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQIL----GLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYE 252 (746)
T ss_pred cceEEEEEEcccccccccccHHHHHHHHHHhhhccccEE----EEecCCCccHHHHHHHHHhhheecccchhhhhhhhHH
Confidence 5999999999999998877666666 444433332 444 899997644 333333222211000000 0000
Q ss_pred ---------------hhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHH----HHhhccccccceeee-----
Q psy10680 275 ---------------DRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILH----FLESGTTNVNRITYL----- 330 (537)
Q Consensus 275 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----- 330 (537)
.......|...+..+................ ......... .............+.
T Consensus 253 ~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~ 331 (746)
T KOG0354|consen 253 ELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKS-TSYEQWVVQAEKAAAPNGPENQRNCFYALHLRK 331 (746)
T ss_pred HHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccccccc-ccccchhhhhhhhhccCCCccchhhHHHHHHHH
Confidence 0000111111222222222211110000000 000000000 001111111100000
Q ss_pred ------ecchhh------hhhcCCChhHHHH-Hhhhc----------c-----------c---cceeechhhHHHHHHhH
Q psy10680 331 ------VLDEAD------RMLDMGFEPQIRK-IIQMT----------R-----------F---NTCVFLGYVLYFWFILV 373 (537)
Q Consensus 331 ------~~~~~~------~~~~~~~~~~~~~-~~~~~----------~-----------~---~~~~~~~~~~~~~~~~~ 373 (537)
.....+ .+.+...+....+ ..... . . .....+...+...+...
T Consensus 332 ~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~ 411 (746)
T KOG0354|consen 332 YNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQN 411 (746)
T ss_pred HHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcC
Confidence 000000 0000000000000 00000 0 0 01111222222333334
Q ss_pred hCceeEEEEeeccCcccccccccc---ccccccccc--------cCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCc
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVS---SSLYRAMGI--------HGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDV 442 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~---~~~~~~~~~--------~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi 442 (537)
.....|||++.+..+..+ .+++. ..|++...+ ..+|++.+|.++++.|++|+++|||||+++++|+|+
T Consensus 412 ~dsR~IIFve~R~sa~~l-~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI 490 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALAL-KKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDI 490 (746)
T ss_pred CCccEEEEEehHHHHHHH-HHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCc
Confidence 557899999999999888 55554 233333333 248999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcc
Q psy10680 443 EDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGN 486 (537)
Q Consensus 443 ~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~ 486 (537)
+.|++||.||...++...+||+|| ||. +.|.+++++......
T Consensus 491 ~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~ 532 (746)
T KOG0354|consen 491 GECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVI 532 (746)
T ss_pred ccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHH
Confidence 999999999999999999999999 997 677888787754433
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.8e-34 Score=322.70 Aligned_cols=315 Identities=20% Similarity=0.232 Sum_probs=203.0
Q ss_pred EEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCC-----CCCCCceEEEEcc
Q psy10680 65 GIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKL-----EEGDGPIALVLAP 139 (537)
Q Consensus 65 i~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~~lil~P 139 (537)
|++|||||||++ |.+|++..+...... ....+.++|||+|
T Consensus 1 V~APTGSGKTLA-----------------------------------A~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISP 45 (1490)
T PRK09751 1 VIAPTGSGKTLA-----------------------------------AFLYALDRLFREGGEDTREAHKRKTSRILYISP 45 (1490)
T ss_pred CcCCCCcHHHHH-----------------------------------HHHHHHHHHHhcccccccccccCCCCEEEEEeC
Confidence 579999999999 888888888754311 1123678999999
Q ss_pred cHHHHHHHHHHHHHhc------------ccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcC-cccccce
Q psy10680 140 TRELAQQIQAVISIFS------------RTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESG-TTNVNRI 206 (537)
Q Consensus 140 t~~L~~q~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~l 206 (537)
+++|+.|+.+.++... ...++++...+|+++..++...+.+.++|+|+||++|..++.++ ...++++
T Consensus 46 LKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~V 125 (1490)
T PRK09751 46 IKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGV 125 (1490)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccC
Confidence 9999999999886421 12478999999999988887777778999999999999887653 3468999
Q ss_pred eEEEecchhhhhhCCChHHHHHHHhhcccc-ccccCCceeecC---chhHHHHhhhCCcccccceeeeccchhhhhcCCC
Q psy10680 207 TYLVLDEADRMLDMGFEPQIRKIIQMTRTR-DLCRGAEIVVAT---PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGF 282 (537)
Q Consensus 207 ~liV~DE~h~~~~~~~~~~l~~il~~~~~~-~~~~~~~~~saT---p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (537)
++|||||+|.+.+..++.++...+..+... ....+...+||| +..+..++.... .... +........
T Consensus 126 r~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~eevA~~L~g~~----pv~I-v~~~~~r~~---- 196 (1490)
T PRK09751 126 ETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDR----PVTV-VNPPAMRHP---- 196 (1490)
T ss_pred CEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCHHHHHHHhcCCC----CEEE-ECCCCCccc----
Confidence 999999999999776666555554443321 111233499999 345566654210 0111 000000000
Q ss_pred hHHHHHHHHhhhcCCCcccceeehh-hhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceee
Q psy10680 283 EPQIRKIIQMTRHAHPVVPVSLFIS-ERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVF 361 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (537)
....... .....+. ....... .... . .....+...
T Consensus 197 ------------------~l~v~vp~~d~~~~~-~~~~~~~----------~~~~---~-~r~~~i~~~----------- 232 (1490)
T PRK09751 197 ------------------QIRIVVPVANMDDVS-SVASGTG----------EDSH---A-GREGSIWPY----------- 232 (1490)
T ss_pred ------------------ceEEEEecCchhhcc-ccccccc----------cccc---h-hhhhhhhHH-----------
Confidence 0000000 0000000 0000000 0000 0 000000000
Q ss_pred chhhHHHHHHhHhCceeEEEEeeccCccccccccccccc---------------------------------cccccccC
Q psy10680 362 LGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSL---------------------------------YRAMGIHG 408 (537)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~---------------------------------~~~~~~~~ 408 (537)
.....+.....+...+|||+++..++.+ ...++... ..+..+||
T Consensus 233 --v~~~il~~i~~~~stLVFvNSR~~AE~L-a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHG 309 (1490)
T PRK09751 233 --IETGILDEVLRHRSTIVFTNSRGLAEKL-TARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHG 309 (1490)
T ss_pred --HHHHHHHHHhcCCCEEEECCCHHHHHHH-HHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccc
Confidence 0000111112334556888888888776 44443221 12457899
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCC
Q psy10680 409 DKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARS 470 (537)
Q Consensus 409 ~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~ 470 (537)
+|++++|..+++.|++|++++||||+++++|||++++++||+++.|.+..+|+||+||+||.
T Consensus 310 sLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 310 SVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred cCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999996
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.3e-33 Score=301.07 Aligned_cols=317 Identities=16% Similarity=0.144 Sum_probs=211.1
Q ss_pred cCCCCCCChhhhhhhhccccCC-cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 40 NSGYGKPTSIQAQSWPICLSGR-DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~~~~~~-~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
..||. |+++|.++++.++.|+ ++++++|||||||.++.+ |+++.
T Consensus 11 ~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aa--------------------------------fll~~-- 55 (844)
T TIGR02621 11 LHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAA--------------------------------WLLAV-- 55 (844)
T ss_pred HhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHH--------------------------------hhccc--
Confidence 35886 9999999999999998 677789999999986221 22322
Q ss_pred hhhcCCCCCCCCCc-eEEEEcccHHHHHHHHHHHHHhcccc-----------------------eeeEEEEEcCcchhHh
Q psy10680 119 HILKMPKLEEGDGP-IALVLAPTRELAQQIQAVISIFSRTM-----------------------RIRHACLYGGTSKMYQ 174 (537)
Q Consensus 119 ~~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~ 174 (537)
... ...+ ..++++||++|+.|+++.+..+...+ ++++..++||.+...+
T Consensus 56 --~~~-----~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q 128 (844)
T TIGR02621 56 --EIG-----AKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDE 128 (844)
T ss_pred --ccc-----ccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHH
Confidence 111 1133 35557899999999999999887654 4889999999999999
Q ss_pred HHHhccCCcEEEeCCchhHHHHhcCcc----------------cccceeEEEecchhhhhhCCChHHHHHHHhhc--ccc
Q psy10680 175 TRDLCRGAEIVVATPGRLIDFLESGTT----------------NVNRITYLVLDEADRMLDMGFEPQIRKIIQMT--RTR 236 (537)
Q Consensus 175 ~~~l~~~~~Ivv~Tp~~l~~~l~~~~~----------------~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~--~~~ 236 (537)
+..+..+++|||+|++.+. ++.+ .+.+++++|+|||| ++.+|...+..|+..+ +..
T Consensus 129 ~~~l~~~p~IIVgT~D~i~----sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~ 202 (844)
T TIGR02621 129 WMLDPHRPAVIVGTVDMIG----SRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD 202 (844)
T ss_pred HHhcCCCCcEEEECHHHHc----CCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc
Confidence 9999999999999964443 3222 26889999999999 5678999999999864 221
Q ss_pred ccccCCceeecC-chhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHH
Q psy10680 237 DLCRGAEIVVAT-PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILH 315 (537)
Q Consensus 237 ~~~~~~~~~saT-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (537)
....++.++||| |............ ......+. . ....
T Consensus 203 ~rprQtLLFSAT~p~ei~~l~~~~~~--~p~~i~V~--~----------------~~l~--------------------- 241 (844)
T TIGR02621 203 FLPLRVVELTATSRTDGPDRTTLLSA--EDYKHPVL--K----------------KRLA--------------------- 241 (844)
T ss_pred cccceEEEEecCCCccHHHHHHHHcc--CCceeecc--c----------------cccc---------------------
Confidence 111234499999 4433222111000 00000000 0 0000
Q ss_pred HHhhccccccce-eeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccc
Q psy10680 316 FLESGTTNVNRI-TYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHY 394 (537)
Q Consensus 316 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~ 394 (537)
...+ .+....... ..... .. .+. ......+...+|||++...+..+ ..
T Consensus 242 --------a~ki~q~v~v~~e~---------Kl~~l-----------v~-~L~-~ll~e~g~~vLVF~NTv~~Aq~L-~~ 290 (844)
T TIGR02621 242 --------AKKIVKLVPPSDEK---------FLSTM-----------VK-ELN-LLMKDSGGAILVFCRTVKHVRKV-FA 290 (844)
T ss_pred --------ccceEEEEecChHH---------HHHHH-----------HH-HHH-HHHhhCCCcEEEEECCHHHHHHH-HH
Confidence 0000 000000000 00000 00 000 01112345667999999999999 66
Q ss_pred cccccccccccccCCCCHHHHH-----HHHHHHhc----CC-------CcEEEEecccccCCCcCCccEEEEecCCCChh
Q psy10680 395 GVSSSLYRAMGIHGDKSQWNRD-----QTLRDFRS----GY-------INVLIASDVASRGLDVEDIKYVVNYDFPDNTE 458 (537)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----g~-------~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~ 458 (537)
.+...++ ..+||+|++.+|. .+++.|++ |. .+|||||+++++|||++. ++||++..| ..
T Consensus 291 ~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~e 365 (844)
T TIGR02621 291 KLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FE 365 (844)
T ss_pred HHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HH
Confidence 6766665 7899999999999 78899987 44 689999999999999975 888887766 68
Q ss_pred hhHhhhhcccCCCCCc-eeEEEec
Q psy10680 459 NYVHRIGRTARSTKTG-ISYTLFT 481 (537)
Q Consensus 459 ~~~Q~~GRagR~~~~g-~~~~l~~ 481 (537)
.|+||+||+||.|..| ..+.++.
T Consensus 366 syIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 366 SMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred HHHHHhcccCCCCCCCCceEEEEe
Confidence 9999999999999854 3344443
No 55
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=6.6e-33 Score=291.21 Aligned_cols=335 Identities=16% Similarity=0.145 Sum_probs=209.4
Q ss_pred CCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcC
Q psy10680 44 GKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKM 123 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 123 (537)
..|+++|.+|++.++.+++.++++|||+|||++ +.. +...+...
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i-----------------------------------~~~-l~~~~~~~ 156 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLI-----------------------------------QYL-LSRYYLEN 156 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHH-----------------------------------HHH-HHHHHHhc
Confidence 489999999999999999999999999999987 322 22222221
Q ss_pred CCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccc
Q psy10680 124 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNV 203 (537)
Q Consensus 124 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 203 (537)
. .+++||||||++|+.|+.+.++.+.......+..+.+|.... .+.+|+|+||+++.+... ..+
T Consensus 157 ~------~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~ 220 (501)
T PHA02558 157 Y------EGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWF 220 (501)
T ss_pred C------CCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhc
Confidence 1 336999999999999999999987654444555666665432 357899999999875432 246
Q ss_pred cceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCC
Q psy10680 204 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGF 282 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (537)
.++++||+||||++... .+..++..++. +... .+||||.+-............++....
T Consensus 221 ~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~l----GLTATp~~~~~~~~~~~~~fG~i~~~v------------ 280 (501)
T PHA02558 221 DQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKF----GLTGSLRDGKANILQYVGLFGDIFKPV------------ 280 (501)
T ss_pred cccCEEEEEchhcccch----hHHHHHHhhhccceEE----EEeccCCCccccHHHHHHhhCCceEEe------------
Confidence 78999999999998764 34555555532 3344 899997532110000000000011000
Q ss_pred hHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeec
Q psy10680 283 EPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFL 362 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (537)
............. ................. ... ... ......+......+. .+
T Consensus 281 --~~~~li~~g~l~~-~~~~~v~~~~~~~~~~~-~~~-------------~~~--------~~~~~~l~~~~~Rn~--~I 333 (501)
T PHA02558 281 --TTSQLMEEGQVTD-LKINSIFLRYPDEDRVK-LKG-------------EDY--------QEEIKYITSHTKRNK--WI 333 (501)
T ss_pred --cHHHHHhCCCcCC-ceEEEEeccCCHHHhhh-hcc-------------cch--------HHHHHHHhccHHHHH--HH
Confidence 0111111100000 00000000000000000 000 000 000000000000000 00
Q ss_pred hhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEe-cccccCCC
Q psy10680 363 GYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIAS-DVASRGLD 441 (537)
Q Consensus 363 ~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT-~~l~~Gid 441 (537)
...+. .....+.+.+|||....+++.+ ...|...+.++..+||+++.++|..+++.|+.|+..+|||| +++++|+|
T Consensus 334 ~~~~~--~~~~~~~~~lV~~~~~~h~~~L-~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~D 410 (501)
T PHA02558 334 ANLAL--KLAKKGENTFVMFKYVEHGKPL-YEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGIS 410 (501)
T ss_pred HHHHH--HHHhcCCCEEEEEEEHHHHHHH-HHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccc
Confidence 00111 1113456677999998888877 88888899999999999999999999999999999999998 89999999
Q ss_pred cCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEe
Q psy10680 442 VEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLF 480 (537)
Q Consensus 442 i~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~ 480 (537)
+|++++||+++++.|...|+||+||++|.+..+....++
T Consensus 411 ip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 411 IKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred cccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 999999999999999999999999999987665433333
No 56
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=3.2e-32 Score=292.75 Aligned_cols=347 Identities=18% Similarity=0.173 Sum_probs=225.2
Q ss_pred cccccCCCCCCChhhhhhhhc-cccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchh
Q psy10680 36 GLGKNSGYGKPTSIQAQSWPI-CLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYIL 114 (537)
Q Consensus 36 ~l~~~~g~~~~~~~Q~~ai~~-~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (537)
.+.+..|+..+.+-|++++.. +.+++|++|++|||+|||++ ..+
T Consensus 22 ~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlI-----------------------------------A~l 66 (766)
T COG1204 22 EILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLI-----------------------------------ALL 66 (766)
T ss_pred HHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHH-----------------------------------HHH
Confidence 333667888888889988865 44569999999999999999 778
Q ss_pred hHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHH
Q psy10680 115 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLID 194 (537)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~ 194 (537)
.++..+.+. +.++||+||+++|+.|.++.++ ....+|+++...+|+....... ..+++|+|+|||++..
T Consensus 67 ai~~~l~~~-------~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~---l~~~~ViVtT~EK~Ds 135 (766)
T COG1204 67 AILSTLLEG-------GGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDDER---LARYDVIVTTPEKLDS 135 (766)
T ss_pred HHHHHHHhc-------CCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccchhh---hccCCEEEEchHHhhH
Confidence 888887653 5679999999999999999999 4467799999999998755422 2578999999999999
Q ss_pred HHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC---chhHHHHhhhCCcccccceeeec
Q psy10680 195 FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT---PGRLIDFLESGTTNVNRITYLVL 271 (537)
Q Consensus 195 ~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT---p~~~~~~l~~~~~~~~~~~~~~~ 271 (537)
.+.+....+.++++||+||+|.+.+..+++.+..+....+......+...+||| ...+.+|+..... ........+
T Consensus 136 l~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l 214 (766)
T COG1204 136 LTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLV-ESDWRPVPL 214 (766)
T ss_pred hhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCccc-ccCCCCccc
Confidence 999888889999999999999999988888888888777664333444588999 5777888887533 111111110
Q ss_pred cc----hhhhhcCC---------ChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhh
Q psy10680 272 DE----ADRMLDMG---------FEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRM 338 (537)
Q Consensus 272 ~~----~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (537)
-. ...+.... ...................++......
T Consensus 215 ~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~------------------------------ 264 (766)
T COG1204 215 RRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRK------------------------------ 264 (766)
T ss_pred ccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCc------------------------------
Confidence 00 00000000 001111111111111111111111000
Q ss_pred hcCCChhHHHHHhhhccccceeechhhHHHHHHh--------HhCceeEEEEeeccCcccccccccc-ccccccccccCC
Q psy10680 339 LDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFIL--------VAGIERWVFMEINHNGTETKHYGVS-SSLYRAMGIHGD 409 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~if~~~~~~~~~l~~~~l~-~~~~~~~~~~~~ 409 (537)
.....+..+...... ......--+.. ....... ...+. .....+..+|+|
T Consensus 265 -------------------~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~~-~~~l~e~v~~GvafHhAG 323 (766)
T COG1204 265 -------------------EAEKTAKKLRIKMSATLSDDEKIVLDEGASPILI-PETPTSE-DEELAELVLRGVAFHHAG 323 (766)
T ss_pred -------------------hHHHHHHHHHHHHhhcCChhhhhhcccccccccc-ccccccc-hHHHHHHHHhCccccccC
Confidence 000000000000000 00000000000 0000000 01111 112345568999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEE----Eec-----CCCChhhhHhhhhcccCCCCC--ceeEE
Q psy10680 410 KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVV----NYD-----FPDNTENYVHRIGRTARSTKT--GISYT 478 (537)
Q Consensus 410 ~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi----~~d-----~p~s~~~~~Q~~GRagR~~~~--g~~~~ 478 (537)
++.++|..+++.|+.|.++||+||+++.+|+|+|+-++|| .|+ .+-+..+++||.|||||.|-. |.+++
T Consensus 324 L~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 324 LPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 9999999999999999999999999999999999877776 566 456788999999999998875 45555
Q ss_pred Ee
Q psy10680 479 LF 480 (537)
Q Consensus 479 l~ 480 (537)
+.
T Consensus 404 ~~ 405 (766)
T COG1204 404 LA 405 (766)
T ss_pred Ee
Confidence 55
No 57
>KOG0329|consensus
Probab=99.98 E-value=2.7e-32 Score=243.56 Aligned_cols=330 Identities=26% Similarity=0.458 Sum_probs=233.8
Q ss_pred cCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccc
Q psy10680 21 SGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (537)
+..+.+.++.|++.+++. ..||..|+.+|.++||...-|.+++.+|..|.|||.+
T Consensus 41 ssgfrdfllkpellraiv-dcgfehpsevqhecipqailgmdvlcqaksgmgktav------------------------ 95 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIV-DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAV------------------------ 95 (387)
T ss_pred ccchhhhhcCHHHHHHHH-hccCCCchHhhhhhhhHHhhcchhheecccCCCceee------------------------
Confidence 345667788899999996 5999999999999999999999999999999999999
Q ss_pred ccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcchhHhHHHhc
Q psy10680 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 101 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|+++.++.+--... ...++++|.|++|+-|+..++..+++.+ ++++.+.+||.........++
T Consensus 96 -----------fvl~tlqqiepv~g-----~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk 159 (387)
T KOG0329|consen 96 -----------FVLATLQQIEPVDG-----QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK 159 (387)
T ss_pred -----------eehhhhhhcCCCCC-----eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh
Confidence 77777777643221 3458999999999999999998888765 689999999999887777787
Q ss_pred cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhC-CChHHHHHHHhhccccccccCCceeecC-chhHHH---
Q psy10680 180 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDM-GFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLID--- 254 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~-~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~--- 254 (537)
+-++|+|+||++++.+..++.+++++++..|+|||+.|++. ..+..+.++....|.. .++-.+||| ...+..
T Consensus 160 ~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~---KQvmmfsatlskeiRpvC~ 236 (387)
T KOG0329|consen 160 NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHE---KQVMMFSATLSKEIRPVCH 236 (387)
T ss_pred CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCccc---ceeeeeeeecchhhHHHHH
Confidence 88899999999999999999999999999999999998764 4566677777766653 233477888 433321
Q ss_pred -HhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecc
Q psy10680 255 -FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLD 333 (537)
Q Consensus 255 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (537)
+++. + ....+.+++...+ .|+.....++.. ..+...+...+
T Consensus 237 kFmQd-P-----mEi~vDdE~KLtL-HGLqQ~YvkLke---------------~eKNrkl~dLL---------------- 278 (387)
T KOG0329|consen 237 KFMQD-P-----MEIFVDDEAKLTL-HGLQQYYVKLKE---------------NEKNRKLNDLL---------------- 278 (387)
T ss_pred hhhcC-c-----hhhhccchhhhhh-hhHHHHHHhhhh---------------hhhhhhhhhhh----------------
Confidence 1211 1 1111112211111 111111111111 11111111111
Q ss_pred hhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHH
Q psy10680 334 EADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQW 413 (537)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 413 (537)
..-.+|. .+||+.+... +
T Consensus 279 ------------------d~LeFNQ-------------------VvIFvKsv~R---l---------------------- 296 (387)
T KOG0329|consen 279 ------------------DVLEFNQ-------------------VVIFVKSVQR---L---------------------- 296 (387)
T ss_pred ------------------hhhhhcc-------------------eeEeeehhhh---h----------------------
Confidence 0000111 1266655433 0
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCC-CcchHHHHH
Q psy10680 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPL-NGNKAQDLI 492 (537)
Q Consensus 414 ~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~-~~~~~~~~~ 492 (537)
. | +.+ +|||+.+++|+|+..++.|++||+|.+...|+||.|||||.|.+|.++.|+... +...+.++.
T Consensus 297 ------~-f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vq 365 (387)
T KOG0329|consen 297 ------S-F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQ 365 (387)
T ss_pred ------h-h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhh
Confidence 0 2 233 899999999999999999999999999999999999999999999999999875 445555665
Q ss_pred HHHHHccccccHH
Q psy10680 493 DILNEAHQFVPDR 505 (537)
Q Consensus 493 ~~l~~~~~~~~~~ 505 (537)
+-++-.-..+|+.
T Consensus 366 dRf~v~i~eLpde 378 (387)
T KOG0329|consen 366 DRFEVNIKELPDE 378 (387)
T ss_pred HhhhccHhhcCcc
Confidence 5555444455554
No 58
>PRK13766 Hef nuclease; Provisional
Probab=99.98 E-value=3e-31 Score=294.95 Aligned_cols=388 Identities=19% Similarity=0.220 Sum_probs=231.6
Q ss_pred CCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcC
Q psy10680 44 GKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKM 123 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 123 (537)
-.|++||.++...++.+ |+++++|||+|||++ +++++...+..
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~-----------------------------------a~~~i~~~l~~- 56 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAI-----------------------------------ALLVIAERLHK- 56 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHH-----------------------------------HHHHHHHHHHh-
Confidence 38999999999887776 999999999999998 66666666531
Q ss_pred CCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccc
Q psy10680 124 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNV 203 (537)
Q Consensus 124 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 203 (537)
.++++|||+||++|+.|+.+.++.+....+.++..++|+....++ ..+..+++|+|+||+.+.+.+..+...+
T Consensus 57 ------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~~~~~ 129 (773)
T PRK13766 57 ------KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAGRISL 129 (773)
T ss_pred ------CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcCCCCh
Confidence 256799999999999999999998765444577788887766543 3344578999999999999888888889
Q ss_pred cceeEEEecchhhhhhCCChHHHHHHH-hhccccccccCCceeecCchhH----HHHhhhCCcccccceeeeccch--hh
Q psy10680 204 NRITYLVLDEADRMLDMGFEPQIRKII-QMTRTRDLCRGAEIVVATPGRL----IDFLESGTTNVNRITYLVLDEA--DR 276 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~~~~~l~~il-~~~~~~~~~~~~~~~saTp~~~----~~~l~~~~~~~~~~~~~~~~~~--~~ 276 (537)
.++++|||||||++........+...+ ...+.... ..+||||... ...+..... ..+........ ..
T Consensus 130 ~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~i----l~lTaTP~~~~~~i~~~~~~L~i--~~v~~~~~~~~~v~~ 203 (773)
T PRK13766 130 EDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLV----LGLTASPGSDEEKIKEVCENLGI--EHVEVRTEDDPDVKP 203 (773)
T ss_pred hhCcEEEEECCccccccccHHHHHHHHHhcCCCCEE----EEEEcCCCCCHHHHHHHHHhCCc--eEEEEcCCCChhHHh
Confidence 999999999999987654333333332 22221223 3889998432 222332211 11110000000 00
Q ss_pred --------hhcCCChHHHH-------HHH----HhhhcCCCccccee--ehhh---hHHHHHHHHhhccccccceeeeec
Q psy10680 277 --------MLDMGFEPQIR-------KII----QMTRHAHPVVPVSL--FISE---RRDTILHFLESGTTNVNRITYLVL 332 (537)
Q Consensus 277 --------~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 332 (537)
.......+... ... .............. ...+ ....+...+..... ........+
T Consensus 204 ~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~~ 282 (773)
T PRK13766 204 YVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDS-EGYEAISIL 282 (773)
T ss_pred hhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCch-HHHHHHHHH
Confidence 00000111111 111 11111111100000 0000 00000111000000 000000000
Q ss_pred ------------------ch----hhhhhcCC-----C--------hhHHHHHh-hhcc-ccceeechhhHHHHHH---h
Q psy10680 333 ------------------DE----ADRMLDMG-----F--------EPQIRKII-QMTR-FNTCVFLGYVLYFWFI---L 372 (537)
Q Consensus 333 ------------------~~----~~~~~~~~-----~--------~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~---~ 372 (537)
.. ...+.... . .+.....+ .... .....+...+...+.. .
T Consensus 283 ~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~ 362 (773)
T PRK13766 283 AEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGK 362 (773)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhc
Confidence 00 00000000 0 00000000 0000 0001111112222211 1
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCC--------CCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCC
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGD--------KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVED 444 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~ 444 (537)
..+.+.+|||.....+..+ ...|...++++..+||. |++.+|..++++|++|+.++||||+++++|+|+|+
T Consensus 363 ~~~~kvlIF~~~~~t~~~L-~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~ 441 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKI-VDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPS 441 (773)
T ss_pred CCCCeEEEEeCcHHHHHHH-HHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCccc
Confidence 4567889999999999999 77777778888888775 89999999999999999999999999999999999
Q ss_pred ccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 445 IKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 445 ~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
+++||+||+|+++..|+||+||+||.|. |.+++++....
T Consensus 442 ~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 442 VDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 9999999999999999999999999865 77777777643
No 59
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.98 E-value=3e-32 Score=268.49 Aligned_cols=351 Identities=20% Similarity=0.193 Sum_probs=254.3
Q ss_pred cceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhc-cccCCcEEEEccCCCccccccccccchhccccccCCCCC
Q psy10680 17 PYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPI-CLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNT 95 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~-~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~ 95 (537)
....+...+.+.+++....-| +..|++.+.|+|.-|+.+ ++.|+|.+|+.+|+||||++
T Consensus 189 ~~~~r~~vdeLdipe~fk~~l-k~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLI------------------- 248 (830)
T COG1202 189 DEVERVPVDELDIPEKFKRML-KREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLI------------------- 248 (830)
T ss_pred cccccccccccCCcHHHHHHH-HhcCcceecchhhhhhhhccccCCceEEEeccCCCcchH-------------------
Confidence 334567788889999988888 679999999999999966 88999999999999999999
Q ss_pred cccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhH
Q psy10680 96 SKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQT 175 (537)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
--++-+..++.. |++.||+||..+|++|-++.|+.-...+++.+.+-.|........
T Consensus 249 ----------------gElAGi~~~l~~-------g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~ 305 (830)
T COG1202 249 ----------------GELAGIPRLLSG-------GKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTRE 305 (830)
T ss_pred ----------------HHhhCcHHHHhC-------CCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccC
Confidence 666666666653 678999999999999999999987788888877777754333221
Q ss_pred ----HHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC---
Q psy10680 176 ----RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT--- 248 (537)
Q Consensus 176 ----~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT--- 248 (537)
..-..++||+|+|.+-+..+|..+ ..+.++..||+||+|.+.+...+..+.-++..++..-...+...+|||
T Consensus 306 ~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN 384 (830)
T COG1202 306 EPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN 384 (830)
T ss_pred CccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC
Confidence 111246899999999999999887 678999999999999999887888777777666552223334489999
Q ss_pred chhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhcccccccee
Q psy10680 249 PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRIT 328 (537)
Q Consensus 249 p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (537)
|..+...+............ .+ +-|-++..+- ..+.+.+....+.
T Consensus 385 p~elA~~l~a~lV~y~~RPV-pl-ErHlvf~~~e------------------------~eK~~ii~~L~k~--------- 429 (830)
T COG1202 385 PEELAKKLGAKLVLYDERPV-PL-ERHLVFARNE------------------------SEKWDIIARLVKR--------- 429 (830)
T ss_pred hHHHHHHhCCeeEeecCCCC-Ch-hHeeeeecCc------------------------hHHHHHHHHHHHH---------
Confidence 77776666542221110000 00 0000010000 1111111111110
Q ss_pred eeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccC
Q psy10680 329 YLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHG 408 (537)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~ 408 (537)
+... ......+ ...|||..+++.+..+ +..|...|+++..+|+
T Consensus 430 -----E~~~-----------~sskg~r--------------------GQtIVFT~SRrr~h~l-A~~L~~kG~~a~pYHa 472 (830)
T COG1202 430 -----EFST-----------ESSKGYR--------------------GQTIVFTYSRRRCHEL-ADALTGKGLKAAPYHA 472 (830)
T ss_pred -----HHhh-----------hhccCcC--------------------CceEEEecchhhHHHH-HHHhhcCCcccccccC
Confidence 0000 0000011 1234999999999999 9999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEE---EecC-CCChhhhHhhhhcccCCCCC--ceeEEEecC
Q psy10680 409 DKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVV---NYDF-PDNTENYVHRIGRTARSTKT--GISYTLFTP 482 (537)
Q Consensus 409 ~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi---~~d~-p~s~~~~~Q~~GRagR~~~~--g~~~~l~~~ 482 (537)
||+-.+|+.+...|.++++.++|+|.+++.|+|+|+-.+|+ -++. ..|+.+|.||+|||||.+-+ |.+++++.+
T Consensus 473 GL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 473 GLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred CCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 99999999999999999999999999999999999644443 1233 34899999999999998764 788888877
Q ss_pred C
Q psy10680 483 L 483 (537)
Q Consensus 483 ~ 483 (537)
.
T Consensus 553 g 553 (830)
T COG1202 553 G 553 (830)
T ss_pred C
Confidence 3
No 60
>PRK09401 reverse gyrase; Reviewed
Probab=99.97 E-value=6.5e-31 Score=294.97 Aligned_cols=302 Identities=22% Similarity=0.233 Sum_probs=206.7
Q ss_pred ccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhH
Q psy10680 37 LGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPA 116 (537)
Q Consensus 37 l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (537)
+.+..|+ .|+++|..+++.++.|+|++++||||+|||.. .+++
T Consensus 73 f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f------------------------------------~l~~ 115 (1176)
T PRK09401 73 FKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF------------------------------------GLVM 115 (1176)
T ss_pred HHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH------------------------------------HHHH
Confidence 3345687 89999999999999999999999999999953 4444
Q ss_pred hHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcc-----hhHhHHHhc-cCCcEEEeCCc
Q psy10680 117 LYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTS-----KMYQTRDLC-RGAEIVVATPG 190 (537)
Q Consensus 117 l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~-~~~~Ivv~Tp~ 190 (537)
+..+.. .+++++||+||++|+.|+.+.++.++...++.+..++|+.. ..+....+. .+++|+|+||+
T Consensus 116 ~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~ 188 (1176)
T PRK09401 116 SLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQ 188 (1176)
T ss_pred HHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHH
Confidence 433322 26779999999999999999999998888888777776643 222333343 46899999999
Q ss_pred hhHHHHhcCcccccceeEEEecchhhhhh-----------CCCh-HHHHHHHhhccccc---------------------
Q psy10680 191 RLIDFLESGTTNVNRITYLVLDEADRMLD-----------MGFE-PQIRKIIQMTRTRD--------------------- 237 (537)
Q Consensus 191 ~l~~~l~~~~~~~~~l~liV~DE~h~~~~-----------~~~~-~~l~~il~~~~~~~--------------------- 237 (537)
++.+.+. .+...+++++|+||||++++ .+|. ..+..++..++...
T Consensus 189 rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~ 266 (1176)
T PRK09401 189 FLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKD 266 (1176)
T ss_pred HHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhccc
Confidence 9998766 34556799999999999986 4564 56777776655310
Q ss_pred cccCCceeecC-chh-HHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceee-hhhhHHHHH
Q psy10680 238 LCRGAEIVVAT-PGR-LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLF-ISERRDTIL 314 (537)
Q Consensus 238 ~~~~~~~~saT-p~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 314 (537)
...+..++||| +.+ ....+...... ..+ .... .... .+..... ..++...+.
T Consensus 267 ~~~q~ilfSAT~~~~~~~~~l~~~ll~-----~~v-~~~~---------------~~~r----nI~~~yi~~~~k~~~L~ 321 (1176)
T PRK09401 267 KKGVLVVSSATGRPRGNRVKLFRELLG-----FEV-GSPV---------------FYLR----NIVDSYIVDEDSVEKLV 321 (1176)
T ss_pred CCceEEEEeCCCCccchHHHHhhccce-----EEe-cCcc---------------cccC----CceEEEEEcccHHHHHH
Confidence 02344578888 322 21111000000 000 0000 0000 0000000 000011111
Q ss_pred HHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccC---cccc
Q psy10680 315 HFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHN---GTET 391 (537)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~---~~~l 391 (537)
. .+. ..+...+|||.+... ++.+
T Consensus 322 ~----------------------------------------------------ll~--~l~~~~LIFv~t~~~~~~ae~l 347 (1176)
T PRK09401 322 E----------------------------------------------------LVK--RLGDGGLIFVPSDKGKEYAEEL 347 (1176)
T ss_pred H----------------------------------------------------HHH--hcCCCEEEEEecccChHHHHHH
Confidence 1 111 112356699999887 8888
Q ss_pred ccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEE----ecccccCCCcCC-ccEEEEecCCC------Chhhh
Q psy10680 392 KHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIA----SDVASRGLDVED-IKYVVNYDFPD------NTENY 460 (537)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLva----T~~l~~Gidi~~-~~~Vi~~d~p~------s~~~~ 460 (537)
...|...|+++..+||+| ...+++|++|+++|||| |+.++||||+|+ +++||+||.|. ....|
T Consensus 348 -~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~ 421 (1176)
T PRK09401 348 -AEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAP 421 (1176)
T ss_pred -HHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccC
Confidence 888899999999999999 22359999999999999 589999999999 89999999997 67889
Q ss_pred HhhhhcccC
Q psy10680 461 VHRIGRTAR 469 (537)
Q Consensus 461 ~Q~~GRagR 469 (537)
.|++||+..
T Consensus 422 ~~~~~r~~~ 430 (1176)
T PRK09401 422 PFLLLRLLS 430 (1176)
T ss_pred HHHHHHHHh
Confidence 999999864
No 61
>KOG0352|consensus
Probab=99.97 E-value=7.9e-31 Score=249.91 Aligned_cols=345 Identities=20% Similarity=0.236 Sum_probs=234.0
Q ss_pred hhhhcccccCCCC-CCChhhhhhhhccccC-CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCcccc
Q psy10680 32 VASRGLGKNSGYG-KPTSIQAQSWPICLSG-RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVD 109 (537)
Q Consensus 32 ~~~~~l~~~~g~~-~~~~~Q~~ai~~~~~~-~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (537)
.+...|.|.+|+. .-++.|..|+..+..+ +||.|++|||+||+++
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLC--------------------------------- 52 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLC--------------------------------- 52 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhh---------------------------------
Confidence 4556676778876 4588999999887766 5999999999999999
Q ss_pred ccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH---h---ccCCc
Q psy10680 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD---L---CRGAE 183 (537)
Q Consensus 110 ~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l---~~~~~ 183 (537)
|.||+|-+ ++.+||+.|..+|+.++..-+..+ .+++..+....+..++.+. + +....
T Consensus 53 --yQLPaL~~-----------~gITIV~SPLiALIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K 115 (641)
T KOG0352|consen 53 --YQLPALVH-----------GGITIVISPLIALIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIK 115 (641)
T ss_pred --hhchHHHh-----------CCeEEEehHHHHHHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCcee
Confidence 88888865 557999999999999888877644 4566666665554444333 2 23567
Q ss_pred EEEeCCchhHH-----HHhcCcccccceeEEEecchhhhhhCC--ChHHHHHHH---hhccccccccCCceeecCc-hhH
Q psy10680 184 IVVATPGRLID-----FLESGTTNVNRITYLVLDEADRMLDMG--FEPQIRKII---QMTRTRDLCRGAEIVVATP-GRL 252 (537)
Q Consensus 184 Ivv~Tp~~l~~-----~l~~~~~~~~~l~liV~DE~h~~~~~~--~~~~l~~il---~~~~~~~~~~~~~~~saTp-~~~ 252 (537)
++..||+.-.. +|+ .-..-..+.++|+||||+...|+ |++.+-.+- ..++..... .++||. ...
T Consensus 116 ~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwv----ALTATA~~~V 190 (641)
T KOG0352|consen 116 MLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWV----ALTATANAKV 190 (641)
T ss_pred EEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceE----EeecccChhH
Confidence 89999986432 221 12234568999999999999886 555544432 222223333 667772 222
Q ss_pred -HHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeee
Q psy10680 253 -IDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLV 331 (537)
Q Consensus 253 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (537)
.+......+. ..+.-+....|+..+..-+.... ++.+....+..+........+..
T Consensus 191 qEDi~~qL~L~---------~PVAiFkTP~FR~NLFYD~~~K~----------~I~D~~~~LaDF~~~~LG~~~~~---- 247 (641)
T KOG0352|consen 191 QEDIAFQLKLR---------NPVAIFKTPTFRDNLFYDNHMKS----------FITDCLTVLADFSSSNLGKHEKA---- 247 (641)
T ss_pred HHHHHHHHhhc---------CcHHhccCcchhhhhhHHHHHHH----------HhhhHhHhHHHHHHHhcCChhhh----
Confidence 2222221111 00111111122222222221110 00111112222211111100000
Q ss_pred cchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCC
Q psy10680 332 LDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKS 411 (537)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 411 (537)
-.........+||||.++..++.+ +-.+...|+++..+|+|+.
T Consensus 248 ------------------------------------~~~~K~~~GCGIVYCRTR~~cEq~-AI~l~~~Gi~A~AYHAGLK 290 (641)
T KOG0352|consen 248 ------------------------------------SQNKKTFTGCGIVYCRTRNECEQV-AIMLEIAGIPAMAYHAGLK 290 (641)
T ss_pred ------------------------------------hcCCCCcCcceEEEeccHHHHHHH-HHHhhhcCcchHHHhcccc
Confidence 000111234577999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHH
Q psy10680 412 QWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDL 491 (537)
Q Consensus 412 ~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~ 491 (537)
..+|.++.+.|.+++..||+||..+++|+|-|++++||+|+.|.+...|.|-.|||||.|....|-+++...|.+.+.=+
T Consensus 291 ~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 291 KKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred cchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887655433
No 62
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=8.3e-31 Score=285.78 Aligned_cols=338 Identities=20% Similarity=0.272 Sum_probs=237.7
Q ss_pred hhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccc
Q psy10680 33 ASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKY 112 (537)
Q Consensus 33 ~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (537)
+...|. +.|+..|+++|.+|+..+.+|+|++|+.|||||||.+ |
T Consensus 59 l~~~l~-~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~-----------------------------------F 102 (851)
T COG1205 59 LKSALV-KAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTES-----------------------------------F 102 (851)
T ss_pred HHHHHH-HhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHH-----------------------------------H
Confidence 355554 4677789999999999999999999999999999999 8
Q ss_pred hhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccce--eeEEEEEcCcchhHhHHHhccCCcEEEeCCc
Q psy10680 113 ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR--IRHACLYGGTSKMYQTRDLCRGAEIVVATPG 190 (537)
Q Consensus 113 ~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~ 190 (537)
++|++.+++..+ ..++|+|.||++|++++.+++..+....+ +.+..++|++...+........++|++|||+
T Consensus 103 llPIld~~l~~~------~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpd 176 (851)
T COG1205 103 LLPILDHLLRDP------SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPD 176 (851)
T ss_pred HHHHHHHHhhCc------CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHH
Confidence 899999998765 33689999999999999999999888776 8889999998888776777789999999999
Q ss_pred hhHHHHhc-Cc---ccccceeEEEecchhhhhhCCChHHHHHHHhhccc----cccccCCceeecC---chhHHHHhhhC
Q psy10680 191 RLIDFLES-GT---TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT----RDLCRGAEIVVAT---PGRLIDFLESG 259 (537)
Q Consensus 191 ~l~~~l~~-~~---~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~----~~~~~~~~~~saT---p~~~~~~l~~~ 259 (537)
+|...+.. .. ..++++++||+||+|.+-.. ++..+..++..+.. .....++...||| |.+...-+...
T Consensus 177 MLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~ 255 (851)
T COG1205 177 MLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGR 255 (851)
T ss_pred HHHHHhccCcchHHHHHhcCcEEEEecceecccc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCC
Confidence 99885533 22 24677999999999987543 56666655555444 2223344477888 44443333221
Q ss_pred Ccccccceeeeccchhhhhc----CCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchh
Q psy10680 260 TTNVNRITYLVLDEADRMLD----MGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEA 335 (537)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (537)
..... .++...... .-..+.......... .....
T Consensus 256 ~f~~~------v~~~g~~~~~~~~~~~~p~~~~~~~~~r------------~s~~~------------------------ 293 (851)
T COG1205 256 DFEVP------VDEDGSPRGLRYFVRREPPIRELAESIR------------RSALA------------------------ 293 (851)
T ss_pred cceee------ccCCCCCCCceEEEEeCCcchhhhhhcc------------cchHH------------------------
Confidence 11110 000000000 000000000000000 00000
Q ss_pred hhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccc---ccccccc----cccccccC
Q psy10680 336 DRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKH---YGVSSSL----YRAMGIHG 408 (537)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~---~~l~~~~----~~~~~~~~ 408 (537)
......-....++.+.++|+.+.+.++.... ..+...+ ..+..+++
T Consensus 294 ---------------------------~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~ 346 (851)
T COG1205 294 ---------------------------ELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRA 346 (851)
T ss_pred ---------------------------HHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccc
Confidence 0000011222345566699999988877621 2222222 56778899
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCC-ChhhhHhhhhcccCCCCCceeEEEecC
Q psy10680 409 DKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD-NTENYVHRIGRTARSTKTGISYTLFTP 482 (537)
Q Consensus 409 ~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~-s~~~~~Q~~GRagR~~~~g~~~~l~~~ 482 (537)
++...+|.++++.|+.|+..++++|++++-|+|+.++..||.++.|. +..+|+|+.||+||.++.+..+.+...
T Consensus 347 ~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 347 GLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred cCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999 899999999999999977776666653
No 63
>PRK14701 reverse gyrase; Provisional
Probab=99.97 E-value=1.8e-30 Score=297.25 Aligned_cols=310 Identities=20% Similarity=0.262 Sum_probs=210.3
Q ss_pred hcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchh
Q psy10680 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYIL 114 (537)
Q Consensus 35 ~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (537)
..+.+..|| .|+++|+++++.+++|++++++||||+|||+. +++
T Consensus 70 ~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~-----------------------------------~~~ 113 (1638)
T PRK14701 70 EFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTF-----------------------------------GAF 113 (1638)
T ss_pred HHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHH-----------------------------------HHH
Confidence 344345899 79999999999999999999999999999986 454
Q ss_pred hHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc--eeeEEEEEcCcchhHhHH---Hhcc-CCcEEEeC
Q psy10680 115 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM--RIRHACLYGGTSKMYQTR---DLCR-GAEIVVAT 188 (537)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~l~~-~~~Ivv~T 188 (537)
+++.... .+.++|||+||++|+.|+...++.++... ++++..++|+.+..++.. .+.. +++|+|+|
T Consensus 114 ~al~~~~--------~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~T 185 (1638)
T PRK14701 114 IALFLAL--------KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTT 185 (1638)
T ss_pred HHHHHHh--------cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEEC
Confidence 4443321 25679999999999999999999887654 567788889988665533 3333 58999999
Q ss_pred CchhHHHHhcCcccccceeEEEecchhhhhh-----------CCChHHHHH----HHhhcc-------------------
Q psy10680 189 PGRLIDFLESGTTNVNRITYLVLDEADRMLD-----------MGFEPQIRK----IIQMTR------------------- 234 (537)
Q Consensus 189 p~~l~~~l~~~~~~~~~l~liV~DE~h~~~~-----------~~~~~~l~~----il~~~~------------------- 234 (537)
|+.+.+.+... ...+++++|+||||++++ .+|.+.+.. ++...+
T Consensus 186 PgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~ 263 (1638)
T PRK14701 186 AQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIE 263 (1638)
T ss_pred CchhHHhHHHH--hhCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhh
Confidence 99888765432 226799999999999986 367666653 322100
Q ss_pred ccccccC-CceeecC-ch--hHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeeh---h
Q psy10680 235 TRDLCRG-AEIVVAT-PG--RLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFI---S 307 (537)
Q Consensus 235 ~~~~~~~-~~~~saT-p~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 307 (537)
......+ ..++||| +. .....+.. .. ...+ ..... .+. .. ...+. .
T Consensus 264 ~~~~~~~~ll~~SAT~~~r~~~~~l~~~-~l-----~f~v-~~~~~--------~lr-----------~i-~~~yi~~~~ 316 (1638)
T PRK14701 264 KIGNKIGCLIVASATGKAKGDRVKLYRE-LL-----GFEV-GSGRS--------ALR-----------NI-VDVYLNPEK 316 (1638)
T ss_pred hcCCCccEEEEEecCCCchhHHHHHhhc-Ce-----EEEe-cCCCC--------CCC-----------Cc-EEEEEECCH
Confidence 0001112 2357888 32 22222221 10 0000 00000 000 00 00000 0
Q ss_pred hhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccC
Q psy10680 308 ERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHN 387 (537)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~ 387 (537)
.....+..++ . ..+...+|||.+...
T Consensus 317 ~~k~~L~~ll----------------------------------------------------~--~~g~~gIVF~~t~~~ 342 (1638)
T PRK14701 317 IIKEHVRELL----------------------------------------------------K--KLGKGGLIFVPIDEG 342 (1638)
T ss_pred HHHHHHHHHH----------------------------------------------------H--hCCCCeEEEEecccc
Confidence 0000111111 1 113345699998876
Q ss_pred c---cccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEec----ccccCCCcCC-ccEEEEecCCC---C
Q psy10680 388 G---TETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASD----VASRGLDVED-IKYVVNYDFPD---N 456 (537)
Q Consensus 388 ~---~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~----~l~~Gidi~~-~~~Vi~~d~p~---s 456 (537)
+ +.+ +..|...|+++..+||+ |..++++|++|+++|||||+ .++||||+|+ +++||+||.|+ +
T Consensus 343 ~e~ae~l-a~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~ 416 (1638)
T PRK14701 343 AEKAEEI-EKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFR 416 (1638)
T ss_pred chHHHHH-HHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcc
Confidence 5 566 88888999999999995 88999999999999999994 8899999999 99999999998 7
Q ss_pred hhhhHhhh-------------hcccCCCCCceeE
Q psy10680 457 TENYVHRI-------------GRTARSTKTGISY 477 (537)
Q Consensus 457 ~~~~~Q~~-------------GRagR~~~~g~~~ 477 (537)
...|.|-. ||+||.|..+.++
T Consensus 417 ~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 417 VDLEDPTIYRILGLLSEILKIEEELKEGIPIEGV 450 (1638)
T ss_pred hhhcccchhhhhcchHHHHHhhhhcccCCcchhH
Confidence 77666655 9999999877766
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=2.5e-30 Score=262.61 Aligned_cols=303 Identities=17% Similarity=0.117 Sum_probs=189.9
Q ss_pred cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccH
Q psy10680 62 DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTR 141 (537)
Q Consensus 62 ~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~ 141 (537)
++++.||||||||.+ +.++++..+... .+.+++|++|++
T Consensus 1 ~vvi~apTGsGKT~~-----------------------------------~~~~~l~~~~~~------~~~~ii~v~P~~ 39 (358)
T TIGR01587 1 LLVIEAPTGYGKTEA-----------------------------------ALLWALHSIKSQ------KADRVIIALPTR 39 (358)
T ss_pred CEEEEeCCCCCHHHH-----------------------------------HHHHHHHHHhhC------CCCeEEEEeehH
Confidence 589999999999999 788888765432 256799999999
Q ss_pred HHHHHHHHHHHHhcccceeeEEEEEcCcchh------------HhHHHh------ccCCcEEEeCCchhHHHHhcCc---
Q psy10680 142 ELAQQIQAVISIFSRTMRIRHACLYGGTSKM------------YQTRDL------CRGAEIVVATPGRLIDFLESGT--- 200 (537)
Q Consensus 142 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l------~~~~~Ivv~Tp~~l~~~l~~~~--- 200 (537)
+|+.|+++.++.+++. .+..++++.... ...... ....+|+|+||+.+...+....
T Consensus 40 ~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~ 116 (358)
T TIGR01587 40 ATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHY 116 (358)
T ss_pred HHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchH
Confidence 9999999999987542 334444432210 000000 0236799999999988765411
Q ss_pred -ccc--cceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHHHhhhCCcccccceeeeccchhh
Q psy10680 201 -TNV--NRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESGTTNVNRITYLVLDEADR 276 (537)
Q Consensus 201 -~~~--~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~~~~~~~~~~~~~~~~~~~~ 276 (537)
..+ -..++||+||+|.+.+..+.. +..++..++. ...+..++||| |..+..++..........
T Consensus 117 ~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~--~~~~~i~~SATlp~~l~~~~~~~~~~~~~~---------- 183 (358)
T TIGR01587 117 EFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKD--NDVPILLMSATLPKFLKEYAEKIGYVEFNE---------- 183 (358)
T ss_pred HHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHH--cCCCEEEEecCchHHHHHHHhcCCCccccc----------
Confidence 111 123799999999998754333 5555555442 12334489999 654444443311100000
Q ss_pred hhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccc
Q psy10680 277 MLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRF 356 (537)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (537)
..... ... ... .............+..
T Consensus 184 ~~~~~---~~~----~~~-~~~~~~~~~~~~~~~~--------------------------------------------- 210 (358)
T TIGR01587 184 PLDLK---EER----RFE-RHRFIKIESDKVGEIS--------------------------------------------- 210 (358)
T ss_pred CCCCc---ccc----ccc-cccceeeccccccCHH---------------------------------------------
Confidence 00000 000 000 0000000000000000
Q ss_pred cceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccccc--ccccccCCCCHHHHHH----HHHHHhcCCCcEE
Q psy10680 357 NTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLY--RAMGIHGDKSQWNRDQ----TLRDFRSGYINVL 430 (537)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~iL 430 (537)
...........+.+.+|||++...++.+ ...|.+.+. .+..+||+++..+|.. +++.|++|+.++|
T Consensus 211 -------~l~~l~~~~~~~~~~lVf~~t~~~~~~~-~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~il 282 (358)
T TIGR01587 211 -------SLERLLEFIKKGGKIAIIVNTVDRAQEF-YQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVI 282 (358)
T ss_pred -------HHHHHHHHhhCCCeEEEEECCHHHHHHH-HHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEE
Confidence 0001111123355667999999999998 666666554 5888999999999876 4889999999999
Q ss_pred EEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCC----ceeEEEecCCCc
Q psy10680 431 IASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT----GISYTLFTPLNG 485 (537)
Q Consensus 431 vaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~----g~~~~l~~~~~~ 485 (537)
|||+++++|+|++ +++||++..| ..+|+||+||+||.|+. |.++++....+.
T Consensus 283 vaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 283 VATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 9999999999995 8888888776 78999999999998764 367777665544
No 65
>KOG0351|consensus
Probab=99.97 E-value=4.4e-30 Score=277.99 Aligned_cols=342 Identities=20% Similarity=0.203 Sum_probs=245.8
Q ss_pred ehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccc
Q psy10680 29 ASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVV 108 (537)
Q Consensus 29 ~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (537)
+++.....+...+|.+..++-|.++|..++.|++++|.+|||+||+++
T Consensus 248 ~t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLC-------------------------------- 295 (941)
T KOG0351|consen 248 ETKELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLC-------------------------------- 295 (941)
T ss_pred cchHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeE--------------------------------
Confidence 334566666667999999999999999999999999999999999999
Q ss_pred cccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH---hcc---CC
Q psy10680 109 DVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD---LCR---GA 182 (537)
Q Consensus 109 ~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~---~~ 182 (537)
|.+|++-. ++.+|||.|..+|+..+...+. ..+++...+.++....++... +.. ..
T Consensus 296 ---YQlPA~l~-----------~gitvVISPL~SLm~DQv~~L~----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~i 357 (941)
T KOG0351|consen 296 ---YQLPALLL-----------GGVTVVISPLISLMQDQVTHLS----KKGIPACFLSSIQTAAERLAILQKLANGNPII 357 (941)
T ss_pred ---eecccccc-----------CCceEEeccHHHHHHHHHHhhh----hcCcceeeccccccHHHHHHHHHHHhCCCCeE
Confidence 77777653 5579999999999998877773 346777888887776544333 222 47
Q ss_pred cEEEeCCchhHHH--HhcCcccccc---eeEEEecchhhhhhCC--ChHHHHHHHhhccccccccCCceeecC-chhHHH
Q psy10680 183 EIVVATPGRLIDF--LESGTTNVNR---ITYLVLDEADRMLDMG--FEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLID 254 (537)
Q Consensus 183 ~Ivv~Tp~~l~~~--l~~~~~~~~~---l~liV~DE~h~~~~~~--~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~ 254 (537)
+|+..|||.+... +......+.. +.++|+||||+...|+ |++.++++-........ ....-++|| ..++..
T Consensus 358 kilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~ 436 (941)
T KOG0351|consen 358 KILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPG-VPFIALTATATERVRE 436 (941)
T ss_pred EEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHH
Confidence 8999999998752 2222223333 8999999999999885 77777766544332111 122256777 333322
Q ss_pred H-hhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecc
Q psy10680 255 F-LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLD 333 (537)
Q Consensus 255 ~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (537)
- +....+.- ..+.... -+..++.+-+..
T Consensus 437 DIi~~L~l~~----------------------------------~~~~~~s-----------------fnR~NL~yeV~~ 465 (941)
T KOG0351|consen 437 DVIRSLGLRN----------------------------------PELFKSS-----------------FNRPNLKYEVSP 465 (941)
T ss_pred HHHHHhCCCC----------------------------------cceeccc-----------------CCCCCceEEEEe
Confidence 2 22211110 0000000 000000000000
Q ss_pred hhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHH
Q psy10680 334 EADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQW 413 (537)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 413 (537)
.. ........+........+...||||..+..++.+ +..+...++.+..+|+||+..
T Consensus 466 k~----------------------~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~v-s~~L~~~~~~a~~YHAGl~~~ 522 (941)
T KOG0351|consen 466 KT----------------------DKDALLDILEESKLRHPDQSGIIYCLSRKECEQV-SAVLRSLGKSAAFYHAGLPPK 522 (941)
T ss_pred cc----------------------CccchHHHHHHhhhcCCCCCeEEEeCCcchHHHH-HHHHHHhchhhHhhhcCCCHH
Confidence 00 0001111222223334556678999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHH
Q psy10680 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLID 493 (537)
Q Consensus 414 ~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~ 493 (537)
+|..+.+.|.+++++|+|||=++++|||.|+++.||+|+.|+|...|.|-+|||||.|....|++|+...|...+..++.
T Consensus 523 ~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 523 ERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred HHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877776665
Q ss_pred HH
Q psy10680 494 IL 495 (537)
Q Consensus 494 ~l 495 (537)
.-
T Consensus 603 s~ 604 (941)
T KOG0351|consen 603 SG 604 (941)
T ss_pred cc
Confidence 44
No 66
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.97 E-value=6.6e-30 Score=271.39 Aligned_cols=327 Identities=13% Similarity=0.136 Sum_probs=202.4
Q ss_pred ChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCC
Q psy10680 47 TSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKL 126 (537)
Q Consensus 47 ~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 126 (537)
..+|.++++.+.+|++++++|+||||||.+ +|-+ +. .+ .|++|.+..+..-.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtq--vPq~--l~-----~~-----------------~flf~~l~~l~~~~-- 217 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQ--VPKL--LL-----WF-----------------NYLFGGFDNLDKID-- 217 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhH--HHHH--HH-----Hh-----------------hhccchhhhhhhcc--
Confidence 346999999999999999999999999976 1100 00 00 02233333332100
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHhccc---ceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccc
Q psy10680 127 EEGDGPIALVLAPTRELAQQIQAVISIFSRT---MRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNV 203 (537)
Q Consensus 127 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 203 (537)
....++.+++++||++|+.|+...+....+. .+..+...+|+.... ......+..+|+|+|+.... ..+
T Consensus 218 ~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~-~~~t~~k~~~Ilv~T~~L~l-------~~L 289 (675)
T PHA02653 218 PNFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDE-LINTNPKPYGLVFSTHKLTL-------NKL 289 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchH-HhhcccCCCCEEEEeCcccc-------ccc
Confidence 0122567999999999999999998765443 356778889987732 22222236789999975311 257
Q ss_pred cceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHHHhhhCCcccccceeeeccchhhhhcCCC
Q psy10680 204 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGF 282 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (537)
+++++||+||||.+...+ +.+..++...... .++..++||| +.....+ ...... ...+.... ..
T Consensus 290 ~~v~~VVIDEaHEr~~~~--DllL~llk~~~~~--~rq~ILmSATl~~dv~~l-~~~~~~---p~~I~I~g--rt----- 354 (675)
T PHA02653 290 FDYGTVIIDEVHEHDQIG--DIIIAVARKHIDK--IRSLFLMTATLEDDRDRI-KEFFPN---PAFVHIPG--GT----- 354 (675)
T ss_pred ccCCEEEccccccCccch--hHHHHHHHHhhhh--cCEEEEEccCCcHhHHHH-HHHhcC---CcEEEeCC--Cc-----
Confidence 889999999999986643 4455555433221 1244599999 4333222 210100 00110000 00
Q ss_pred hHHHHHHHHhhhcCCCcccceee-hhhhH--HHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccce
Q psy10680 283 EPQIRKIIQMTRHAHPVVPVSLF-ISERR--DTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTC 359 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (537)
..+.... ..... ....... . ....
T Consensus 355 ----------------~~pV~~~yi~~~~~~~~~~~y~---------------~-----------~~k~----------- 381 (675)
T PHA02653 355 ----------------LFPISEVYVKNKYNPKNKRAYI---------------E-----------EEKK----------- 381 (675)
T ss_pred ----------------CCCeEEEEeecCcccccchhhh---------------H-----------HHHH-----------
Confidence 0000000 00000 0000000 0 0000
Q ss_pred eechhhHHHHHH--hHhCceeEEEEeeccCcccccccccccc--ccccccccCCCCHHHHHHHHHHH-hcCCCcEEEEec
Q psy10680 360 VFLGYVLYFWFI--LVAGIERWVFMEINHNGTETKHYGVSSS--LYRAMGIHGDKSQWNRDQTLRDF-RSGYINVLIASD 434 (537)
Q Consensus 360 ~~~~~~~~~~~~--~~~~~~~~if~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~iLvaT~ 434 (537)
..+..+.. ...+...+||+.....+..+ ...|... ++.+..+||+|++. .+.++.| ++|+.+|||||+
T Consensus 382 ----~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l-~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATd 454 (675)
T PHA02653 382 ----NIVTALKKYTPPKGSSGIVFVASVSQCEEY-KKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTP 454 (675)
T ss_pred ----HHHHHHHHhhcccCCcEEEEECcHHHHHHH-HHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccC
Confidence 00000000 01233556999999988888 6666655 68899999999974 4566777 789999999999
Q ss_pred ccccCCCcCCccEEEEec---CCC---------ChhhhHhhhhcccCCCCCceeEEEecCCCc
Q psy10680 435 VASRGLDVEDIKYVVNYD---FPD---------NTENYVHRIGRTARSTKTGISYTLFTPLNG 485 (537)
Q Consensus 435 ~l~~Gidi~~~~~Vi~~d---~p~---------s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~ 485 (537)
++++|||+|++++||++| .|. |..+|.||+|||||. .+|.|+.++++.+.
T Consensus 455 IAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 455 YLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred hhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999999999999999998 554 788999999999999 78999999998764
No 67
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.2e-29 Score=266.16 Aligned_cols=347 Identities=16% Similarity=0.150 Sum_probs=206.0
Q ss_pred CCCChhhhhhhhcccc-C--CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 44 GKPTSIQAQSWPICLS-G--RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~-~--~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
..+++||.+|+..+.. | ++.++++|||+|||++ .+.++..+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlv------------------------------------ai~aa~~l 297 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV------------------------------------GVTAACTV 297 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHH------------------------------------HHHHHHHh
Confidence 3689999999988774 3 4789999999999998 23333333
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcC-
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESG- 199 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~- 199 (537)
+..+|||||+..|+.||.+.+..+.......+..++|+.... .....+|+|+|++.+.+...+.
T Consensus 298 ----------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~ 362 (732)
T TIGR00603 298 ----------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSY 362 (732)
T ss_pred ----------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccch
Confidence 234999999999999999999987643344556666643221 1234789999998876432211
Q ss_pred -------cccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchhHHHHhhhCCcccccceeeecc
Q psy10680 200 -------TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLD 272 (537)
Q Consensus 200 -------~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~ 272 (537)
.+.-..+++||+||||++.. ..+..++..+...... .+||||.+...........+.+..
T Consensus 363 ~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~a~~RL----GLTATP~ReD~~~~~L~~LiGP~v----- 429 (732)
T TIGR00603 363 ESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQAHCKL----GLTATLVREDDKITDLNFLIGPKL----- 429 (732)
T ss_pred hhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcCcCcEE----EEeecCcccCCchhhhhhhcCCee-----
Confidence 12235688999999999854 4455566655544444 899998653221111000000000
Q ss_pred chhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhh
Q psy10680 273 EADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352 (537)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (537)
+.-.+..+...-.- ...........-.......++..... .+..+.
T Consensus 430 ---------ye~~~~eLi~~G~L-A~~~~~ev~v~~t~~~~~~yl~~~~~------------------------~k~~l~ 475 (732)
T TIGR00603 430 ---------YEANWMELQKKGFI-ANVQCAEVWCPMTPEFYREYLRENSR------------------------KRMLLY 475 (732)
T ss_pred ---------eecCHHHHHhCCcc-ccceEEEEEecCCHHHHHHHHHhcch------------------------hhhHHh
Confidence 00011111111000 00000000000000001111100000 000000
Q ss_pred hccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcC-CCcEEE
Q psy10680 353 MTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSG-YINVLI 431 (537)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~iLv 431 (537)
..+.+....+..++. .....+.+.+|||.....+..+ +..+. +..+||+++..+|..+++.|+.| .+++||
T Consensus 476 ~~np~K~~~~~~Li~--~he~~g~kiLVF~~~~~~l~~~-a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv 547 (732)
T TIGR00603 476 VMNPNKFRACQFLIR--FHEQRGDKIIVFSDNVFALKEY-AIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIF 547 (732)
T ss_pred hhChHHHHHHHHHHH--HHhhcCCeEEEEeCCHHHHHHH-HHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEE
Confidence 011111111111111 1123667888999887776666 44442 34589999999999999999875 789999
Q ss_pred EecccccCCCcCCccEEEEecCC-CChhhhHhhhhcccCCCCCcee-------EEEecCC--CcchHHHHHHHHH
Q psy10680 432 ASDVASRGLDVEDIKYVVNYDFP-DNTENYVHRIGRTARSTKTGIS-------YTLFTPL--NGNKAQDLIDILN 496 (537)
Q Consensus 432 aT~~l~~Gidi~~~~~Vi~~d~p-~s~~~~~Q~~GRagR~~~~g~~-------~~l~~~~--~~~~~~~~~~~l~ 496 (537)
+|+++.+|+|+|++++||+++.| .|...|+||+||++|.+..|.+ +.+++.. +.....+-..+|-
T Consensus 548 ~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 548 LSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred EecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 99999999999999999999987 5999999999999998876554 7777764 3333333344443
No 68
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=2.1e-29 Score=273.87 Aligned_cols=303 Identities=17% Similarity=0.215 Sum_probs=201.6
Q ss_pred hhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCC
Q psy10680 50 QAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEG 129 (537)
Q Consensus 50 Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 129 (537)
-.+.+..+.++++++++|+||||||.+ +.++++....
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~-----------------------------------vpl~lL~~~~-------- 43 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTA-----------------------------------VPLALLDAPG-------- 43 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHH-----------------------------------HHHHHHHhhc--------
Confidence 345566777888999999999999999 6777776542
Q ss_pred CCceEEEEcccHHHHHHHHHHHHH-hcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeE
Q psy10680 130 DGPIALVLAPTRELAQQIQAVISI-FSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITY 208 (537)
Q Consensus 130 ~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~l 208 (537)
.+++++++.|+++++.|+++.+.. +....+..++....+.. ....+++|+|+||+.|.+.+.. ...++++++
T Consensus 44 ~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~ 116 (819)
T TIGR01970 44 IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGA 116 (819)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCE
Confidence 145799999999999999998864 33344444544433322 2234678999999999998876 357899999
Q ss_pred EEecchhh-hhhCCChH-HHHHHHhhccc-cccccCCceeecC-chh-HHHHhhhCCcccccceeeeccchhhhhcCCCh
Q psy10680 209 LVLDEADR-MLDMGFEP-QIRKIIQMTRT-RDLCRGAEIVVAT-PGR-LIDFLESGTTNVNRITYLVLDEADRMLDMGFE 283 (537)
Q Consensus 209 iV~DE~h~-~~~~~~~~-~l~~il~~~~~-~~~~~~~~~~saT-p~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (537)
|||||+|. .++..+.- .+..+...++. .+. .++||| +.. +..++.... .+.... ..
T Consensus 117 VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlql----IlmSATl~~~~l~~~l~~~~-------vI~~~g--r~------ 177 (819)
T TIGR01970 117 LIFDEFHERSLDADLGLALALDVQSSLREDLKI----LAMSATLDGERLSSLLPDAP-------VVESEG--RS------ 177 (819)
T ss_pred EEEeccchhhhccchHHHHHHHHHHhcCCCceE----EEEeCCCCHHHHHHHcCCCc-------EEEecC--cc------
Confidence 99999995 56554432 23334443332 334 499999 322 233322100 000000 00
Q ss_pred HHHHHHHHhhhcCCCcccceee-h-hhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceee
Q psy10680 284 PQIRKIIQMTRHAHPVVPVSLF-I-SERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVF 361 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (537)
.++... . ....+.+.. ...
T Consensus 178 ----------------~pVe~~y~~~~~~~~~~~------------------------------~v~------------- 198 (819)
T TIGR01970 178 ----------------FPVEIRYLPLRGDQRLED------------------------------AVS------------- 198 (819)
T ss_pred ----------------eeeeeEEeecchhhhHHH------------------------------HHH-------------
Confidence 000000 0 000000000 000
Q ss_pred chhhHHHHHHhHhCceeEEEEeeccCccccccccccc---cccccccccCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q psy10680 362 LGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSS---SLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASR 438 (537)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~ 438 (537)
..+... ........+||+....+...+ ...+.. .++.+..+||+|+..+|..+++.|++|..+|||||+++++
T Consensus 199 --~~l~~~-l~~~~g~iLVFlpg~~eI~~l-~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAEr 274 (819)
T TIGR01970 199 --RAVEHA-LASETGSILVFLPGQAEIRRV-QEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAET 274 (819)
T ss_pred --HHHHHH-HHhcCCcEEEEECCHHHHHHH-HHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhh
Confidence 000000 011234456999988888777 555544 3688889999999999999999999999999999999999
Q ss_pred CCCcCCccEEEEecCCCC------------------hhhhHhhhhcccCCCCCceeEEEecCCCc
Q psy10680 439 GLDVEDIKYVVNYDFPDN------------------TENYVHRIGRTARSTKTGISYTLFTPLNG 485 (537)
Q Consensus 439 Gidi~~~~~Vi~~d~p~s------------------~~~~~Q~~GRagR~~~~g~~~~l~~~~~~ 485 (537)
|||+|++++||+++.++. ..++.||+|||||. .+|.||.++++.+.
T Consensus 275 gItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 275 SLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred cccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 999999999999998752 34589999999999 89999999987553
No 69
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=7.1e-29 Score=253.43 Aligned_cols=340 Identities=21% Similarity=0.249 Sum_probs=233.6
Q ss_pred eeehhhhhhcccccCCCCCCChhhhhhhhccccC------CcEEEEccCCCccccccccccchhccccccCCCCCccccc
Q psy10680 27 LIASDVASRGLGKNSGYGKPTSIQAQSWPICLSG------RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100 (537)
Q Consensus 27 ~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~------~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (537)
......+...+.+..+| .+|..|++++..|..+ ++-+++|.-|||||.+
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvV------------------------ 299 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVV------------------------ 299 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHH------------------------
Confidence 34445556666667888 9999999999998865 4789999999999999
Q ss_pred ccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH---
Q psy10680 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD--- 177 (537)
Q Consensus 101 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 177 (537)
.+++++..+.. |.++..++||.-|+.|.+..+..++..+++++..++|..........
T Consensus 300 -----------A~laml~ai~~--------G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~ 360 (677)
T COG1200 300 -----------ALLAMLAAIEA--------GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQ 360 (677)
T ss_pred -----------HHHHHHHHHHc--------CCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHH
Confidence 77888877754 77899999999999999999999999999999999998775544333
Q ss_pred hc-cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCc-hhHHHH
Q psy10680 178 LC-RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATP-GRLIDF 255 (537)
Q Consensus 178 l~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp-~~~~~~ 255 (537)
+. ...+|||||.. |....+.+.++.+||+||-|++ +..-+..+...... .+...++|||| ++.+..
T Consensus 361 l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVIiDEQHRF-----GV~QR~~L~~KG~~--~Ph~LvMTATPIPRTLAl 428 (677)
T COG1200 361 LASGEIDIVVGTHA-----LIQDKVEFHNLGLVIIDEQHRF-----GVHQRLALREKGEQ--NPHVLVMTATPIPRTLAL 428 (677)
T ss_pred HhCCCCCEEEEcch-----hhhcceeecceeEEEEeccccc-----cHHHHHHHHHhCCC--CCcEEEEeCCCchHHHHH
Confidence 33 35899999964 4445678999999999999994 44344333222211 23444899994 444433
Q ss_pred hhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchh
Q psy10680 256 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEA 335 (537)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (537)
..-..+.++.+..+.... ..+.-..........+...+.
T Consensus 429 t~fgDldvS~IdElP~GR------------------------kpI~T~~i~~~~~~~v~e~i~----------------- 467 (677)
T COG1200 429 TAFGDLDVSIIDELPPGR------------------------KPITTVVIPHERRPEVYERIR----------------- 467 (677)
T ss_pred HHhccccchhhccCCCCC------------------------CceEEEEeccccHHHHHHHHH-----------------
Confidence 322222222111111000 000000000122222222221
Q ss_pred hhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccc-------ccccccc--ccccccc
Q psy10680 336 DRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETK-------HYGVSSS--LYRAMGI 406 (537)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~-------~~~l~~~--~~~~~~~ 406 (537)
..+..|...++.|...++.+.+. ...+... ++++..+
T Consensus 468 ----------------------------------~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~ 513 (677)
T COG1200 468 ----------------------------------EEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLV 513 (677)
T ss_pred ----------------------------------HHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEE
Confidence 11223444455555544443221 2222221 3557789
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCC-ChhhhHhhhhcccCCCCCceeEEEecCCCc
Q psy10680 407 HGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD-NTENYVHRIGRTARSTKTGISYTLFTPLNG 485 (537)
Q Consensus 407 ~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~-s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~ 485 (537)
||.|+..+++++++.|++|+++|||||.+++.|||+|++++.|+.+.-+ -....-|..||+||.+..+.|++++.+...
T Consensus 514 HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~ 593 (677)
T COG1200 514 HGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLS 593 (677)
T ss_pred ecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCC
Confidence 9999999999999999999999999999999999999999999988653 577889999999999999999999999875
Q ss_pred chHHHHHHHHHH
Q psy10680 486 NKAQDLIDILNE 497 (537)
Q Consensus 486 ~~~~~~~~~l~~ 497 (537)
...++=++.+.+
T Consensus 594 ~~a~~RL~im~~ 605 (677)
T COG1200 594 EVAKQRLKIMRE 605 (677)
T ss_pred hhHHHHHHHHHh
Confidence 555555555554
No 70
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=8.9e-29 Score=264.06 Aligned_cols=394 Identities=15% Similarity=0.149 Sum_probs=230.2
Q ss_pred cccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhh
Q psy10680 36 GLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILP 115 (537)
Q Consensus 36 ~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (537)
+..+..|+ .|+++|.-+.+.+.+|+ |..+.||+|||++ +++|
T Consensus 70 a~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~-----------------------------------a~lp 111 (790)
T PRK09200 70 AAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLT-----------------------------------ATMP 111 (790)
T ss_pred HHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHH-----------------------------------HHHH
Confidence 33345677 99999999999888775 9999999999999 7888
Q ss_pred HhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchh-HH
Q psy10680 116 ALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRL-ID 194 (537)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~ 194 (537)
++...+. |+.+.|++||+.|+.|.+.++..+...+|+++..+.|+.+...+. +....++|++|||..+ .+
T Consensus 112 ~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r-~~~y~~dIvygT~~~l~fD 182 (790)
T PRK09200 112 LYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEK-KAIYEADIIYTTNSELGFD 182 (790)
T ss_pred HHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHH-HHhcCCCEEEECCccccch
Confidence 8755543 666999999999999999999999999999999999998732222 2335799999999999 44
Q ss_pred HHhcCc------ccccceeEEEecchhhhhhCC----------------ChHHHHHHHhhcccc---ccccCCceeecCc
Q psy10680 195 FLESGT------TNVNRITYLVLDEADRMLDMG----------------FEPQIRKIIQMTRTR---DLCRGAEIVVATP 249 (537)
Q Consensus 195 ~l~~~~------~~~~~l~liV~DE~h~~~~~~----------------~~~~l~~il~~~~~~---~~~~~~~~~saTp 249 (537)
.|.... ..+..+.++|+||+|.++-.. .......+...+... ........+.-|+
T Consensus 183 yLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~ 262 (790)
T PRK09200 183 YLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTD 262 (790)
T ss_pred hHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecH
Confidence 444322 355789999999999965321 111222222222110 0000000111121
Q ss_pred hhH---HH-----------------Hhhh----CCcccccceeeeccc--------hhhh-hcCCChHHHHHHHHhhhcC
Q psy10680 250 GRL---ID-----------------FLES----GTTNVNRITYLVLDE--------ADRM-LDMGFEPQIRKIIQMTRHA 296 (537)
Q Consensus 250 ~~~---~~-----------------~l~~----~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~ 296 (537)
..+ .. ++.+ .........+++.+. ..++ .+..++.-+-+.+......
T Consensus 263 ~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v 342 (790)
T PRK09200 263 QGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGV 342 (790)
T ss_pred hHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCC
Confidence 111 11 1111 000000111111111 0111 1122333333333332211
Q ss_pred CCcccceeehhhhHHHHHHHHhh---ccccccceeeeecchhhhhhcCCCh--hHHHHHhhhccccce------eechhh
Q psy10680 297 HPVVPVSLFISERRDTILHFLES---GTTNVNRITYLVLDEADRMLDMGFE--PQIRKIIQMTRFNTC------VFLGYV 365 (537)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~ 365 (537)
.........-.-...++...... .++.... ...+....+....- |..+.... ...... .....+
T Consensus 343 ~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t----~~~e~~~~Y~l~v~~IPt~kp~~r-~d~~~~i~~~~~~K~~al 417 (790)
T PRK09200 343 EITEENRTMASITIQNLFRMFPKLSGMTGTAKT----EEKEFFEVYNMEVVQIPTNRPIIR-IDYPDKVFVTLDEKYKAV 417 (790)
T ss_pred CcCCCceehhhhhHHHHHHHhHHHhccCCCChH----HHHHHHHHhCCcEEECCCCCCccc-ccCCCeEEcCHHHHHHHH
Confidence 11000000000011111111110 0000000 00001111110000 00000000 000000 011111
Q ss_pred HHHHH-HhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCc--
Q psy10680 366 LYFWF-ILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDV-- 442 (537)
Q Consensus 366 ~~~~~-~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi-- 442 (537)
+.... ....+...+|||.+...++.+ +..|...|+++..+||.+...++..+...++.| +|+|||++++||+|+
T Consensus 418 ~~~i~~~~~~~~pvLIf~~t~~~se~l-~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l 494 (790)
T PRK09200 418 IEEVKERHETGRPVLIGTGSIEQSETF-SKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKL 494 (790)
T ss_pred HHHHHHHHhcCCCEEEEeCcHHHHHHH-HHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCc
Confidence 11111 123566788999999999999 999999999999999999988887777777665 799999999999999
Q ss_pred -CCcc-----EEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 443 -EDIK-----YVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 443 -~~~~-----~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
|.+. +||+++.|.+...|.||+||+||.|.+|.++.|++..|
T Consensus 495 ~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 495 GEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred ccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 6998 99999999999999999999999999999999998755
No 71
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.96 E-value=1.9e-29 Score=274.82 Aligned_cols=305 Identities=18% Similarity=0.191 Sum_probs=201.2
Q ss_pred hhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCC
Q psy10680 50 QAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEG 129 (537)
Q Consensus 50 Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 129 (537)
-.+.+..+.++++++++||||||||.+ |.++++.....
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~-----------------------------------~pl~lL~~~~~------- 47 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTW-----------------------------------LPLQLLQHGGI------- 47 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHH-----------------------------------HHHHHHHcCCc-------
Confidence 345566777888999999999999999 66677654321
Q ss_pred CCceEEEEcccHHHHHHHHHHHHH-hcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeE
Q psy10680 130 DGPIALVLAPTRELAQQIQAVISI-FSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITY 208 (537)
Q Consensus 130 ~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~l 208 (537)
+++++++.||++++.|+++.+.. +....+..++...++.... ....+|+|+||+.+.+.+.. ...++++++
T Consensus 48 -~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~ 119 (812)
T PRK11664 48 -NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGL 119 (812)
T ss_pred -CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcE
Confidence 34699999999999999999864 4444566666555543321 23568999999999998875 457899999
Q ss_pred EEecchhh-hhhCCC-hHHHHHHHhhccc-cccccCCceeecC-chh-HHHHhhhCCcccccceeeeccchhhhhcCCCh
Q psy10680 209 LVLDEADR-MLDMGF-EPQIRKIIQMTRT-RDLCRGAEIVVAT-PGR-LIDFLESGTTNVNRITYLVLDEADRMLDMGFE 283 (537)
Q Consensus 209 iV~DE~h~-~~~~~~-~~~l~~il~~~~~-~~~~~~~~~~saT-p~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (537)
|||||+|. ..+..+ ...+..++..++. .+.+ ++||| +.. +..++... ..+.... .. +
T Consensus 120 IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli----lmSATl~~~~l~~~~~~~-------~~I~~~g--r~----~- 181 (812)
T PRK11664 120 VILDEFHERSLQADLALALLLDVQQGLRDDLKLL----IMSATLDNDRLQQLLPDA-------PVIVSEG--RS----F- 181 (812)
T ss_pred EEEcCCCccccccchHHHHHHHHHHhCCccceEE----EEecCCCHHHHHHhcCCC-------CEEEecC--cc----c-
Confidence 99999997 333222 1223334443332 3344 99999 322 23222210 0000000 00 0
Q ss_pred HHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeech
Q psy10680 284 PQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLG 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (537)
.+ ...+... .....+...+ .
T Consensus 182 -pV-------~~~y~~~-------~~~~~~~~~v---------------------------------------------~ 201 (812)
T PRK11664 182 -PV-------ERRYQPL-------PAHQRFDEAV---------------------------------------------A 201 (812)
T ss_pred -cc-------eEEeccC-------chhhhHHHHH---------------------------------------------H
Confidence 00 0000000 0000000000 0
Q ss_pred hhHHHHHHhHhCceeEEEEeeccCccccccccccc---cccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCC
Q psy10680 364 YVLYFWFILVAGIERWVFMEINHNGTETKHYGVSS---SLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGL 440 (537)
Q Consensus 364 ~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gi 440 (537)
..+... ........+||+....++..+ ...+.. .++.+..+||+|+..+|..+++.|++|+.+|||||+++++||
T Consensus 202 ~~l~~~-l~~~~g~iLVFlpg~~ei~~l-~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsL 279 (812)
T PRK11664 202 RATAEL-LRQESGSLLLFLPGVGEIQRV-QEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSL 279 (812)
T ss_pred HHHHHH-HHhCCCCEEEEcCCHHHHHHH-HHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcc
Confidence 000000 011234456999998888888 666654 467888899999999999999999999999999999999999
Q ss_pred CcCCccEEEEecCCCC------------------hhhhHhhhhcccCCCCCceeEEEecCCCc
Q psy10680 441 DVEDIKYVVNYDFPDN------------------TENYVHRIGRTARSTKTGISYTLFTPLNG 485 (537)
Q Consensus 441 di~~~~~Vi~~d~p~s------------------~~~~~Q~~GRagR~~~~g~~~~l~~~~~~ 485 (537)
|+|++++||+++.++. ..+|.||+|||||. .+|.||.++++.+.
T Consensus 280 tIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 280 TIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred cccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 9999999999887643 35799999999998 69999999997543
No 72
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=2.5e-28 Score=255.33 Aligned_cols=391 Identities=17% Similarity=0.167 Sum_probs=223.9
Q ss_pred ccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
+..|+ .|+++|..+++.++.|+ |..+.||+|||++ +.+|++.
T Consensus 98 R~lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla-----------------------------------~~lp~~~ 139 (656)
T PRK12898 98 RVLGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLT-----------------------------------ATLPAGT 139 (656)
T ss_pred HHhCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHH-----------------------------------HHHHHHH
Confidence 45676 99999999999999998 9999999999999 8888887
Q ss_pred hhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchh-HHHHh
Q psy10680 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRL-IDFLE 197 (537)
Q Consensus 119 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~ 197 (537)
.... |+.++|++||++|+.|.++++..++..+++++..++|+.+.. ......+++|+++|...| .+.|.
T Consensus 140 ~al~--------G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLr 209 (656)
T PRK12898 140 AALA--------GLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLR 209 (656)
T ss_pred Hhhc--------CCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhcc
Confidence 6543 667999999999999999999999999999999999997643 344556899999999888 34443
Q ss_pred cCc-------------------------ccccceeEEEecchhhhhh-CC-----------C---hHH---HHHHHhhcc
Q psy10680 198 SGT-------------------------TNVNRITYLVLDEADRMLD-MG-----------F---EPQ---IRKIIQMTR 234 (537)
Q Consensus 198 ~~~-------------------------~~~~~l~liV~DE~h~~~~-~~-----------~---~~~---l~~il~~~~ 234 (537)
... .....+++.|+||+|.++- +. . ... ...+...+.
T Consensus 210 d~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~ 289 (656)
T PRK12898 210 DRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLK 289 (656)
T ss_pred ccccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcC
Confidence 221 1235688999999998542 21 0 011 111222221
Q ss_pred cc---ccccCCceeecC---chhHHHHhhh---------------------CCcccccceeeeccc--------hhhh-h
Q psy10680 235 TR---DLCRGAEIVVAT---PGRLIDFLES---------------------GTTNVNRITYLVLDE--------ADRM-L 278 (537)
Q Consensus 235 ~~---~~~~~~~~~saT---p~~~~~~l~~---------------------~~~~~~~~~~~~~~~--------~~~~-~ 278 (537)
.. ........+.-| -..+..++.. .........+++.+. ..++ .
T Consensus 290 ~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~ 369 (656)
T PRK12898 290 EGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMP 369 (656)
T ss_pred CCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECC
Confidence 10 000011111112 1111111111 000000111111111 0111 1
Q ss_pred cCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhh---ccccccceeeeecchhhhhhcCC------ChhHHHH
Q psy10680 279 DMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLES---GTTNVNRITYLVLDEADRMLDMG------FEPQIRK 349 (537)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 349 (537)
+..+..-+-+.++..............-.-...++...... .+...... ..+....+... ..+....
T Consensus 370 gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~----~~El~~~y~l~vv~IPt~kp~~r~ 445 (656)
T PRK12898 370 DRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREV----AGELWSVYGLPVVRIPTNRPSQRR 445 (656)
T ss_pred CCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHH----HHHHHHHHCCCeEEeCCCCCccce
Confidence 12233333333333221111000000000001111111100 00000000 00000000000 0000000
Q ss_pred Hhhhccc-cceeechhhHHHHHH-hHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCC
Q psy10680 350 IIQMTRF-NTCVFLGYVLYFWFI-LVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYI 427 (537)
Q Consensus 350 ~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 427 (537)
.....-. ..-.....+...... ...+...+|||.+...++.+ +..|...|+++..+||.++. +...+..++.+..
T Consensus 446 ~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L-~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g 522 (656)
T PRK12898 446 HLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERL-SALLREAGLPHQVLNAKQDA--EEAAIVARAGQRG 522 (656)
T ss_pred ecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHH-HHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCC
Confidence 0000000 000011111111111 11245678999999999999 99999999999999998664 4444555665666
Q ss_pred cEEEEecccccCCCcC---Ccc-----EEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 428 NVLIASDVASRGLDVE---DIK-----YVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 428 ~iLvaT~~l~~Gidi~---~~~-----~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
.|+|||++++||+||+ ++. +||+++.|.|...|.||+||+||.|.+|.++++++..|
T Consensus 523 ~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 523 RITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred cEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 7999999999999999 666 99999999999999999999999999999999999865
No 73
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=9e-29 Score=267.00 Aligned_cols=372 Identities=18% Similarity=0.168 Sum_probs=224.7
Q ss_pred CCChhhhhhhhccccC---CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhh
Q psy10680 45 KPTSIQAQSWPICLSG---RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHIL 121 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~---~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 121 (537)
.+++.|.++++.+..+ +++++.||||||||.+ |+.++...+.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v-----------------------------------~l~~i~~~l~ 188 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEV-----------------------------------YLQAIAEVLA 188 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHH-----------------------------------HHHHHHHHHH
Confidence 6899999999999874 7899999999999999 6665555443
Q ss_pred cCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH---h-ccCCcEEEeCCchhHHHHh
Q psy10680 122 KMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD---L-CRGAEIVVATPGRLIDFLE 197 (537)
Q Consensus 122 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~~~~Ivv~Tp~~l~~~l~ 197 (537)
. |.++||++|+++|+.|+.+.++..+ +.++..++++.+..++... + ...++|+|||+..+.
T Consensus 189 ~--------g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---- 253 (679)
T PRK05580 189 Q--------GKQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---- 253 (679)
T ss_pred c--------CCeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----
Confidence 2 5679999999999999999998654 5678899998776544333 2 346899999997764
Q ss_pred cCcccccceeEEEecchhhhhhCCCh------HHHHHHHhhccccccccCCceeecCch-hHHHHhhhCCcccccceeee
Q psy10680 198 SGTTNVNRITYLVLDEADRMLDMGFE------PQIRKIIQMTRTRDLCRGAEIVVATPG-RLIDFLESGTTNVNRITYLV 270 (537)
Q Consensus 198 ~~~~~~~~l~liV~DE~h~~~~~~~~------~~l~~il~~~~~~~~~~~~~~~saTp~-~~~~~l~~~~~~~~~~~~~~ 270 (537)
..+.++++||+||+|....+... ..+..........+.+ ++||||. +..............+....
T Consensus 254 ---~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~i----l~SATps~~s~~~~~~g~~~~~~l~~r~ 326 (679)
T PRK05580 254 ---LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVV----LGSATPSLESLANAQQGRYRLLRLTKRA 326 (679)
T ss_pred ---ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEE----EEcCCCCHHHHHHHhccceeEEEecccc
Confidence 46788999999999987644211 1222222222223333 8899965 33333222111100000000
Q ss_pred ----ccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhcc---cccc---ceeeeecchhhhhhc
Q psy10680 271 ----LDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGT---TNVN---RITYLVLDEADRMLD 340 (537)
Q Consensus 271 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~ 340 (537)
+... .+.+ +...... .... . ....-.+.+...+.... -..+ ...++.|..+.....
T Consensus 327 ~~~~~p~v-~~id------~~~~~~~--~~~~--~---ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~ 392 (679)
T PRK05580 327 GGARLPEV-EIID------MRELLRG--ENGS--F---LSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAE 392 (679)
T ss_pred ccCCCCeE-EEEe------chhhhhh--cccC--C---CCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccC
Confidence 0000 0000 0000000 0000 0 00111222222222211 1111 122445555555555
Q ss_pred CCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccc--ccccccccCCCCH--HHHH
Q psy10680 341 MGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSS--LYRAMGIHGDKSQ--WNRD 416 (537)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~~--~~r~ 416 (537)
+..+.....+....+.-.|..|+........++.+... .+.......+.+ +..+... +.++..+|+++.. .++.
T Consensus 393 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~-~l~~~g~G~e~~-~e~l~~~fp~~~v~~~~~d~~~~~~~~~ 470 (679)
T PRK05580 393 CPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGST-DLVPVGPGTERL-EEELAELFPEARILRIDRDTTRRKGALE 470 (679)
T ss_pred CCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCC-eeEEeeccHHHH-HHHHHHhCCCCcEEEEeccccccchhHH
Confidence 55554443333334444566665555444444444332 233333333333 4444443 5677888999864 5688
Q ss_pred HHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCC--C----------ChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 417 QTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFP--D----------NTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 417 ~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p--~----------s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
.+++.|++|+.+|||+|+++++|+|+|++++|+.+|.+ . ....|.|++||+||.+..|.+++.....+
T Consensus 471 ~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 471 QLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 99999999999999999999999999999999766543 2 23578999999999999999998777665
Q ss_pred cchHH
Q psy10680 485 GNKAQ 489 (537)
Q Consensus 485 ~~~~~ 489 (537)
...++
T Consensus 551 ~~~~~ 555 (679)
T PRK05580 551 HPVIQ 555 (679)
T ss_pred CHHHH
Confidence 44333
No 74
>KOG0952|consensus
Probab=99.96 E-value=1.1e-29 Score=265.78 Aligned_cols=361 Identities=19% Similarity=0.198 Sum_probs=224.3
Q ss_pred cCCCCCCChhhhhhhhccc-cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 40 NSGYGKPTSIQAQSWPICL-SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~~~-~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
.++|+.++.+|.+++|.+. ++.|.|||||||+|||-+ +.|.++.
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~l-----------------------------------a~L~ILr 149 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVL-----------------------------------AELCILR 149 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHH-----------------------------------HHHHHHH
Confidence 3678899999999998866 456999999999999999 6777777
Q ss_pred hhhcCC--CCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHH
Q psy10680 119 HILKMP--KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFL 196 (537)
Q Consensus 119 ~~~~~~--~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l 196 (537)
.+.+.. .....++.+++||+|+++|+.++.+.+.+-+..+|+.+..++|++...+.. -.+++|+|+|||++.-.-
T Consensus 150 ~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvT 226 (1230)
T KOG0952|consen 150 TIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVT 226 (1230)
T ss_pred HHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeee
Confidence 665411 111234778999999999999999999988888899999999987754332 257999999999986443
Q ss_pred hcC---cccccceeEEEecchhhhhhCCChHHHHHHHhhcc----ccccccCCceeecC-c--hhHHHHhhhCCcccccc
Q psy10680 197 ESG---TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR----TRDLCRGAEIVVAT-P--GRLIDFLESGTTNVNRI 266 (537)
Q Consensus 197 ~~~---~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~----~~~~~~~~~~~saT-p--~~~~~~l~~~~~~~~~~ 266 (537)
... ...++.+++||+||+|.+.++ +++.++.++.... ..+...+...+||| | ..+..|+.... ..
T Consensus 227 Rk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~----~~ 301 (1230)
T KOG0952|consen 227 RKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNP----YA 301 (1230)
T ss_pred eeeccchhhhhheeeEEeeeehhhcCc-ccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCC----cc
Confidence 322 235788999999999988775 7888888877655 24444455588999 4 33355554420 01
Q ss_pred eeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhH
Q psy10680 267 TYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQ 346 (537)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (537)
....++..-+...... .. +..... ..............+.+..++
T Consensus 302 glfsFd~~yRPvpL~~--~~---iG~k~~-~~~~~~~~~d~~~~~kv~e~~----------------------------- 346 (1230)
T KOG0952|consen 302 GLFSFDQRYRPVPLTQ--GF---IGIKGK-KNRQQKKNIDEVCYDKVVEFL----------------------------- 346 (1230)
T ss_pred ceeeecccccccceee--eE---Eeeecc-cchhhhhhHHHHHHHHHHHHH-----------------------------
Confidence 1112222111000000 00 000000 000000000011111111111
Q ss_pred HHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccc----------------------cc-ccccc
Q psy10680 347 IRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGV----------------------SS-SLYRA 403 (537)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l----------------------~~-~~~~~ 403 (537)
..+....|||.++...... ++.+ ++ .....
T Consensus 347 --------------------------~~g~qVlvFvhsR~~Ti~t-A~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~ 399 (1230)
T KOG0952|consen 347 --------------------------QEGHQVLVFVHSRNETIRT-AKKLRERAETNGEKDLFLPSPRNKQLKELFQQGM 399 (1230)
T ss_pred --------------------------HcCCeEEEEEecChHHHHH-HHHHHHHHHhcCcccccCCChhhHHHHHHHHhhh
Confidence 1222222444333322221 1111 00 01233
Q ss_pred ccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEE----EecCC------CChhhhHhhhhcccCC--C
Q psy10680 404 MGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVV----NYDFP------DNTENYVHRIGRTARS--T 471 (537)
Q Consensus 404 ~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi----~~d~p------~s~~~~~Q~~GRagR~--~ 471 (537)
..+|+||...+|..+++.|..|.++||+||+++.+|+|+|+--++| .||.- ....+.+|..|||||. +
T Consensus 400 ~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 400 GIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred hhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 4589999999999999999999999999999999999998654444 33332 2567789999999994 4
Q ss_pred CCceeEEEecCCCcchHHHHHHHHHHccccccHHHHHH
Q psy10680 472 KTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509 (537)
Q Consensus 472 ~~g~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 509 (537)
..|.++++.+.+..+.+ ..++.. ..++..+|...
T Consensus 480 ~~G~giIiTt~dkl~~Y---~sLl~~-~~piES~~~~~ 513 (1230)
T KOG0952|consen 480 SSGEGIIITTRDKLDHY---ESLLTG-QNPIESQLLPC 513 (1230)
T ss_pred CCceEEEEecccHHHHH---HHHHcC-CChhHHHHHHH
Confidence 57888887776544433 333332 22455554433
No 75
>KOG0349|consensus
Probab=99.96 E-value=1.4e-28 Score=234.87 Aligned_cols=312 Identities=26% Similarity=0.391 Sum_probs=206.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHh---cccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCccccccee
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIF---SRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRIT 207 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~ 207 (537)
.+.++|+-|+++|++|....++.| .....++...+.||.....+...+..+.+|+|+||.++...+..+.+.+...+
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 678999999999999999865554 34446777788888888889999999999999999999999999999999999
Q ss_pred EEEecchhhhhhCCChHHHHHHHhhccccc---cccCCceeecCch-----hHHHHhhhCCcccccc-eeeeccchhhhh
Q psy10680 208 YLVLDEADRMLDMGFEPQIRKIIQMTRTRD---LCRGAEIVVATPG-----RLIDFLESGTTNVNRI-TYLVLDEADRML 278 (537)
Q Consensus 208 liV~DE~h~~~~~~~~~~l~~il~~~~~~~---~~~~~~~~saTp~-----~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 278 (537)
++|+||++.++..++...+.++...++... .-.+..+.|||.. .+.+.+--.+.++.-. ...+.++++.+
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv- 444 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV- 444 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc-
Confidence 999999999999889999999988887621 2234456677621 1111000001111000 00000111111
Q ss_pred cCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhcccccc-ce-eeeecchhhhhhcCCChhHHHHHhhhccc
Q psy10680 279 DMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVN-RI-TYLVLDEADRMLDMGFEPQIRKIIQMTRF 356 (537)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (537)
..+...........+...++......+ .. ...... ..+. ..+
T Consensus 445 --------------------v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Sp---------e~~s-~a~------ 488 (725)
T KOG0349|consen 445 --------------------VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSP---------ENPS-SAT------ 488 (725)
T ss_pred --------------------eeecCCccCccHHHHhhhhccCCcccccccccccCCC---------CChh-hhh------
Confidence 111111111111111222211110000 00 000000 0000 000
Q ss_pred cceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccc---cccccccCCCCHHHHHHHHHHHhcCCCcEEEEe
Q psy10680 357 NTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSL---YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIAS 433 (537)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT 433 (537)
.+ .-..............+.++||.++..+..+ .++++..| +.++.+||+..+.+|.+.++.|+++..++||||
T Consensus 489 -ki-lkgEy~v~ai~~h~mdkaiifcrtk~dcDnL-er~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflict 565 (725)
T KOG0349|consen 489 -KI-LKGEYGVVAIRRHAMDKAIIFCRTKQDCDNL-ERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICT 565 (725)
T ss_pred -HH-hcCchhhhhhhhhccCceEEEEeccccchHH-HHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEe
Confidence 00 0000111112223445677999999999999 66665543 678889999999999999999999999999999
Q ss_pred cccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecC
Q psy10680 434 DVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTP 482 (537)
Q Consensus 434 ~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~ 482 (537)
+.+.+|+|+..+-++|+...|.+...|+||+||+||+..-|.++.++..
T Consensus 566 dvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 566 DVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred hhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeec
Confidence 9999999999999999999999999999999999999888888888765
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.96 E-value=4.1e-28 Score=254.90 Aligned_cols=379 Identities=18% Similarity=0.176 Sum_probs=227.9
Q ss_pred hcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchh
Q psy10680 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYIL 114 (537)
Q Consensus 35 ~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (537)
.+..+..|+ .|+++|.-+...+..|+ |..++||+|||++ +.+
T Consensus 47 Ea~~R~lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLv-----------------------------------a~l 88 (745)
T TIGR00963 47 EASKRVLGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLT-----------------------------------ATL 88 (745)
T ss_pred HHHHHHhCC-CccchHHhhhhhhcCCc--eeeecCCCccHHH-----------------------------------HHH
Confidence 333345677 99999999999888775 9999999999999 788
Q ss_pred hHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchh-H
Q psy10680 115 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRL-I 193 (537)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~ 193 (537)
|++...+. |..+.|++||..|+.|.++++..+...+|+++..++|+.+..++... ..++|++|||..| +
T Consensus 89 pa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgf 158 (745)
T TIGR00963 89 PAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGF 158 (745)
T ss_pred HHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhh
Confidence 87543332 34499999999999999999999999999999999999886544333 3689999999999 7
Q ss_pred HHHhcC------cccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchhHHHHhhhCCcccccce
Q psy10680 194 DFLESG------TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRIT 267 (537)
Q Consensus 194 ~~l~~~------~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~~~~~l~~~~~~~~~~~ 267 (537)
..|..+ ...+..+.++|+||+|.++-..... .+....+... ....+.+++| +...+... .
T Consensus 159 DyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRt---pLiisg~~~~--~~~ly~~a~~--i~r~L~~~------~- 224 (745)
T TIGR00963 159 DYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEART---PLIISGPAEK--STELYLQANR--FAKALEKE------V- 224 (745)
T ss_pred HHHhcccccchhhhhccccceeEeecHHHHhHHhhhh---HHhhcCCCCC--chHHHHHHHH--HHHhhccC------C-
Confidence 777655 3467889999999999986421111 1111110000 0001222221 11111110 0
Q ss_pred eeeccchhh-h-hcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeee-------cc-----
Q psy10680 268 YLVLDEADR-M-LDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLV-------LD----- 333 (537)
Q Consensus 268 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----- 333 (537)
....++... + +.......+...... ...+... .......+...+.......+..-|.+ .+
T Consensus 225 dy~~de~~k~v~Lt~~G~~~~e~~~~~-~~ly~~~-----~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR 298 (745)
T TIGR00963 225 HYEVDEKNRAVLLTEKGIKKAEDLLGV-DNLYDLE-----NSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGR 298 (745)
T ss_pred CeEEecCCCceeECHHHHHHHHHHcCC-ccccChh-----hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCc
Confidence 001111100 0 000000011111000 0000000 00000111111110000000000000 00
Q ss_pred ---------hhhhhhc-------------------------------CCC-----hhHHHHHhhhcc-------------
Q psy10680 334 ---------EADRMLD-------------------------------MGF-----EPQIRKIIQMTR------------- 355 (537)
Q Consensus 334 ---------~~~~~~~-------------------------------~~~-----~~~~~~~~~~~~------------- 355 (537)
..+..++ +.. ......++....
T Consensus 299 ~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d 378 (745)
T TIGR00963 299 IMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKD 378 (745)
T ss_pred CCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeee
Confidence 0000000 000 000111111000
Q ss_pred ccceee------chhhHH-HHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCc
Q psy10680 356 FNTCVF------LGYVLY-FWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYIN 428 (537)
Q Consensus 356 ~~~~~~------~~~~~~-~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 428 (537)
.....+ ...++. .......+...+|||.+...++.+ +..|...|++...+|+. ..+|...+..|+.+...
T Consensus 379 ~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~l-s~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~ 455 (745)
T TIGR00963 379 LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELL-SNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA 455 (745)
T ss_pred CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHH-HHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce
Confidence 001111 111111 112335677889999999999999 99999999999999998 77888899999999999
Q ss_pred EEEEecccccCCCcCC-------ccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 429 VLIASDVASRGLDVED-------IKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 429 iLvaT~~l~~Gidi~~-------~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
|+|||++++||+|++. ..+||+++.|.|...|.|++||+||.|.+|.+..|++..|
T Consensus 456 VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 456 VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 9999999999999998 5599999999999999999999999999999999998865
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.96 E-value=5.4e-28 Score=255.61 Aligned_cols=108 Identities=12% Similarity=0.096 Sum_probs=96.9
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcC---------
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVE--------- 443 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~--------- 443 (537)
..+...+|||.+...++.+ +..|...|++...+||.+...++..+...++.| .|+|||++++||+|++
T Consensus 422 ~~~~pvLIft~s~~~se~l-s~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~G 498 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIY-SELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELG 498 (762)
T ss_pred hCCCCEEEEECcHHHHHHH-HHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccC
Confidence 3566789999999988888 999999999999999999988887777766666 7999999999999999
Q ss_pred CccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 444 DIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 444 ~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
.+.+|++++.|....+ .||+||+||.|.+|.+++|++..|
T Consensus 499 GL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 499 GLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred CeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 9999999999988777 999999999999999999998755
No 78
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.96 E-value=5.9e-28 Score=271.62 Aligned_cols=286 Identities=21% Similarity=0.270 Sum_probs=187.3
Q ss_pred cCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHh
Q psy10680 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYH 119 (537)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 119 (537)
..|+ .|+++|+.+++.++.|++++++||||+|||. |.++++..
T Consensus 74 ~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~------------------------------------f~l~~~~~ 116 (1171)
T TIGR01054 74 AVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT------------------------------------FGLAMSLF 116 (1171)
T ss_pred hcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH------------------------------------HHHHHHHH
Confidence 3454 8999999999999999999999999999996 34455444
Q ss_pred hhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeE---EEEEcCcchhHhH---HHhc-cCCcEEEeCCchh
Q psy10680 120 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRH---ACLYGGTSKMYQT---RDLC-RGAEIVVATPGRL 192 (537)
Q Consensus 120 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~l~-~~~~Ivv~Tp~~l 192 (537)
+.. .+++++||+||++|+.|+.+.++.+....++.+ +.++|+.+..++. ..+. .+++|+|+||+.+
T Consensus 117 l~~-------~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL 189 (1171)
T TIGR01054 117 LAK-------KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFL 189 (1171)
T ss_pred HHh-------cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHH
Confidence 432 167799999999999999999999887666554 3567887766543 2333 3589999999999
Q ss_pred HHHHhcCcccccceeEEEecchhhhhh-----------CCChHH-HHHHHhhcc-------------------ccccccC
Q psy10680 193 IDFLESGTTNVNRITYLVLDEADRMLD-----------MGFEPQ-IRKIIQMTR-------------------TRDLCRG 241 (537)
Q Consensus 193 ~~~l~~~~~~~~~l~liV~DE~h~~~~-----------~~~~~~-l~~il~~~~-------------------~~~~~~~ 241 (537)
...+..- .. +++++|+||||++++ .+|... +..++..++ ......+
T Consensus 190 ~~~~~~l--~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 266 (1171)
T TIGR01054 190 SKNYDEL--GP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKR 266 (1171)
T ss_pred HHHHHHh--cC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccC
Confidence 8766541 12 899999999999987 456543 444433211 0001111
Q ss_pred --CceeecC--chhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHH
Q psy10680 242 --AEIVVAT--PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFL 317 (537)
Q Consensus 242 --~~~~saT--p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (537)
..++||| |......+..... ...+ ...
T Consensus 267 ~~li~~SAT~~p~~~~~~l~r~ll-----~~~v-~~~------------------------------------------- 297 (1171)
T TIGR01054 267 GCLIVSSATGRPRGKRAKLFRELL-----GFEV-GGG------------------------------------------- 297 (1171)
T ss_pred cEEEEEeCCCCccccHHHHccccc-----ceEe-cCc-------------------------------------------
Confidence 1246888 3222111100000 0000 000
Q ss_pred hhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeec---cCccccccc
Q psy10680 318 ESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEIN---HNGTETKHY 394 (537)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~---~~~~~l~~~ 394 (537)
......+........ . . ...+...+. ..+...+|||.+. ..++++ +.
T Consensus 298 ---~~~~r~I~~~~~~~~-------~--~---------------~~~L~~ll~--~l~~~~IVFv~t~~~~~~a~~l-~~ 347 (1171)
T TIGR01054 298 ---SDTLRNVVDVYVEDE-------D--L---------------KETLLEIVK--KLGTGGIVYVSIDYGKEKAEEI-AE 347 (1171)
T ss_pred ---cccccceEEEEEecc-------c--H---------------HHHHHHHHH--HcCCCEEEEEeccccHHHHHHH-HH
Confidence 000000000000000 0 0 000001111 1134567999998 888888 88
Q ss_pred cccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEe----cccccCCCcCC-ccEEEEecCCC
Q psy10680 395 GVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIAS----DVASRGLDVED-IKYVVNYDFPD 455 (537)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT----~~l~~Gidi~~-~~~Vi~~d~p~ 455 (537)
.|...|+++..+||+++. .+++.|++|+++||||| ++++||||+|+ +++||+||.|.
T Consensus 348 ~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 348 FLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 888889999999999973 68999999999999995 89999999999 89999999995
No 79
>KOG0353|consensus
Probab=99.95 E-value=1.8e-28 Score=230.50 Aligned_cols=343 Identities=20% Similarity=0.266 Sum_probs=237.0
Q ss_pred ceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccccccc
Q psy10680 25 NVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWN 104 (537)
Q Consensus 25 ~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (537)
++..|++.+.+.|...+.....+|.|..+|...++|+++++..|||.||+++
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslc---------------------------- 125 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLC---------------------------- 125 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchh----------------------------
Confidence 3456788888888777888899999999999999999999999999999999
Q ss_pred CccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH---h---
Q psy10680 105 NNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD---L--- 178 (537)
Q Consensus 105 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l--- 178 (537)
|.+|++.. .+.+|+++|..+|++++.-.++++ |+....+....+.++.... +
T Consensus 126 -------yqlpal~a-----------dg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nk 183 (695)
T KOG0353|consen 126 -------YQLPALCA-----------DGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNK 183 (695)
T ss_pred -------hhhhHHhc-----------CCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCC
Confidence 89999875 567999999999999888888765 4444555554444332211 1
Q ss_pred ccCCcEEEeCCchhHH---HHh--cCcccccceeEEEecchhhhhhCC--ChHHHHHHHh---hccccccccCCceeecC
Q psy10680 179 CRGAEIVVATPGRLID---FLE--SGTTNVNRITYLVLDEADRMLDMG--FEPQIRKIIQ---MTRTRDLCRGAEIVVAT 248 (537)
Q Consensus 179 ~~~~~Ivv~Tp~~l~~---~l~--~~~~~~~~l~liV~DE~h~~~~~~--~~~~l~~il~---~~~~~~~~~~~~~~saT 248 (537)
.....++..||+.+.. ++. .+......+.+|-+||+|+-..|+ |++.+..+-- .++....+ .++||
T Consensus 184 dse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~ii----gltat 259 (695)
T KOG0353|consen 184 DSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPII----GLTAT 259 (695)
T ss_pred CceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCcee----eeehh
Confidence 1246789999999864 222 234567889999999999998875 4544433221 12222222 55666
Q ss_pred c-hhHHHHhhhCCcccccceeeeccchhhhhcCCC-hHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccc
Q psy10680 249 P-GRLIDFLESGTTNVNRITYLVLDEADRMLDMGF-EPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNR 326 (537)
Q Consensus 249 p-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (537)
. ...++.... .+++..+- .+..+| ++.+.
T Consensus 260 atn~vl~d~k~---------il~ie~~~-tf~a~fnr~nl~--------------------------------------- 290 (695)
T KOG0353|consen 260 ATNHVLDDAKD---------ILCIEAAF-TFRAGFNRPNLK--------------------------------------- 290 (695)
T ss_pred hhcchhhHHHH---------HHhHHhhh-eeecccCCCCce---------------------------------------
Confidence 2 222221111 00000000 000000 00000
Q ss_pred eeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccc
Q psy10680 327 ITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGI 406 (537)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~ 406 (537)
|-+... +.+.-..+......+..-..+..+||||.+...++.+ +..|..+|+.+..+
T Consensus 291 --yev~qk--------------------p~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekv-a~alkn~gi~a~~y 347 (695)
T KOG0353|consen 291 --YEVRQK--------------------PGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKV-AKALKNHGIHAGAY 347 (695)
T ss_pred --eEeeeC--------------------CCChHHHHHHHHHHhccccCCCcceEEEeccccHHHH-HHHHHhcCcccccc
Confidence 000000 0000000111111122223455677999999999999 99999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHh------------------------
Q psy10680 407 HGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH------------------------ 462 (537)
Q Consensus 407 ~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q------------------------ 462 (537)
|+.|.+.+|.-+-+.|..|++.|+|||-.+++|||-|++++||+.+.|.|...|.|
T Consensus 348 ha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqi 427 (695)
T KOG0353|consen 348 HANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQI 427 (695)
T ss_pred ccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------hhhcccCCCCCceeEEEecCCCcchHHHHHH
Q psy10680 463 -------------------RIGRTARSTKTGISYTLFTPLNGNKAQDLID 493 (537)
Q Consensus 463 -------------------~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~ 493 (537)
-.|||||.+.+..|++++.-.|--+...+..
T Consensus 428 nilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssmv~ 477 (695)
T KOG0353|consen 428 NILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSMVQ 477 (695)
T ss_pred ehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHHHH
Confidence 6799999999999999998765444433333
No 80
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=1.3e-27 Score=240.39 Aligned_cols=311 Identities=15% Similarity=0.167 Sum_probs=183.4
Q ss_pred hhhhhhhccccCCc--EEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCC
Q psy10680 49 IQAQSWPICLSGRD--LIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKL 126 (537)
Q Consensus 49 ~Q~~ai~~~~~~~~--vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 126 (537)
+|.++++.+..+++ +++++|||+|||++ +++|++..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~-----------------------------------~~~~~l~~------- 38 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLA-----------------------------------WLTPLLHG------- 38 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHH-----------------------------------HHHHHHHc-------
Confidence 59999999998874 78899999999999 77777642
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHhccc----ceeeEEEEEcCcchh--Hh------------------HHHhccCC
Q psy10680 127 EEGDGPIALVLAPTRELAQQIQAVISIFSRT----MRIRHACLYGGTSKM--YQ------------------TRDLCRGA 182 (537)
Q Consensus 127 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~------------------~~~l~~~~ 182 (537)
+.+++|++|+++|++|+.+.++.+... .+..+..+.|....+ .. .......+
T Consensus 39 ----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p 114 (357)
T TIGR03158 39 ----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTP 114 (357)
T ss_pred ----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCC
Confidence 234899999999999999999887643 255666666653222 00 01112367
Q ss_pred cEEEeCCchhHHHHhcCcc--------cccceeEEEecchhhhhhCCChH-----HHHHHHhhccccccccCCceeecC-
Q psy10680 183 EIVVATPGRLIDFLESGTT--------NVNRITYLVLDEADRMLDMGFEP-----QIRKIIQMTRTRDLCRGAEIVVAT- 248 (537)
Q Consensus 183 ~Ivv~Tp~~l~~~l~~~~~--------~~~~l~liV~DE~h~~~~~~~~~-----~l~~il~~~~~~~~~~~~~~~saT- 248 (537)
.|++|||+.|..++..... .+.++++|||||+|.+..+.... ....++..... ..+..++|||
T Consensus 115 ~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~i~lSAT~ 191 (357)
T TIGR03158 115 IILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC---RRKFVFLSATP 191 (357)
T ss_pred CEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhc---CCcEEEEecCC
Confidence 8999999999876643111 25789999999999987543211 22222222211 1344589999
Q ss_pred chhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhh--hcCCCcccceeehh--hhHHHHHHHHhhccccc
Q psy10680 249 PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT--RHAHPVVPVSLFIS--ERRDTILHFLESGTTNV 324 (537)
Q Consensus 249 p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 324 (537)
+..+...+...... . .......... ....+. +.+..-.... ....+......... .+...+....
T Consensus 192 ~~~~~~~l~~~~~~-~-~~~~~v~g~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~------- 260 (357)
T TIGR03158 192 DPALILRLQNAKQA-G-VKIAPIDGEK-YQFPDN-PELEADNKTQSFRPVLPPVELELIPAPDFKEEELSELA------- 260 (357)
T ss_pred CHHHHHHHHhcccc-C-ceeeeecCcc-cccCCC-hhhhccccccccceeccceEEEEEeCCchhHHHHHHHH-------
Confidence 55556666542100 0 0000000000 000000 0000000000 00000000000000 0000000000
Q ss_pred cceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccc--cc
Q psy10680 325 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSL--YR 402 (537)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~--~~ 402 (537)
..+........+.+.+|||++...++.+ ...|...+ +.
T Consensus 261 ---------------------------------------~~i~~~~~~~~~~k~LIf~nt~~~~~~l-~~~L~~~~~~~~ 300 (357)
T TIGR03158 261 ---------------------------------------EEVIERFRQLPGERGAIILDSLDEVNRL-SDLLQQQGLGDD 300 (357)
T ss_pred ---------------------------------------HHHHHHHhccCCCeEEEEECCHHHHHHH-HHHHhhhCCCce
Confidence 0000000012345667999999999998 77776643 56
Q ss_pred cccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhccc
Q psy10680 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTA 468 (537)
Q Consensus 403 ~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRag 468 (537)
+..+||.+++.+|.+. ++.+|||||+++++|+|++.. .|| ++ |.+...|+||+||+|
T Consensus 301 ~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 301 IGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 7789999999887644 478999999999999999876 555 45 889999999999987
No 81
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=5.7e-27 Score=241.50 Aligned_cols=329 Identities=19% Similarity=0.217 Sum_probs=194.1
Q ss_pred CCChhhhhhhhcccc----CCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 45 KPTSIQAQSWPICLS----GRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~----~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
.|+++|++|+.++.. ++..++++|||+|||.+ .+.++..+
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~v------------------------------------a~~~~~~~ 79 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVV------------------------------------AAEAIAEL 79 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHH------------------------------------HHHHHHHh
Confidence 799999999999998 88999999999999987 22233333
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCc
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGT 200 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~ 200 (537)
+..+|||||+.+|+.|+++.+....... -.++.+.|+.... .+..|.|+|.+.+........
T Consensus 80 ----------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~-------~~~~i~vat~qtl~~~~~l~~ 141 (442)
T COG1061 80 ----------KRSTLVLVPTKELLDQWAEALKKFLLLN-DEIGIYGGGEKEL-------EPAKVTVATVQTLARRQLLDE 141 (442)
T ss_pred ----------cCCEEEEECcHHHHHHHHHHHHHhcCCc-cccceecCceecc-------CCCcEEEEEhHHHhhhhhhhh
Confidence 2239999999999999998777654322 1233333332211 014699999999887421122
Q ss_pred ccccceeEEEecchhhhhhCCChHHHHHHHhhccccc-cccCCceeecCchhHHH-HhhhCCcccccceeeeccchhhhh
Q psy10680 201 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRD-LCRGAEIVVATPGRLID-FLESGTTNVNRITYLVLDEADRML 278 (537)
Q Consensus 201 ~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~-~~~~~~~~saTp~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~ 278 (537)
.....+++||||||||+.... ...+...+.... .. .+||||.+... ........+.++.+
T Consensus 142 ~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~~~~~~~L----GLTATp~R~D~~~~~~l~~~~g~~vy---------- 203 (442)
T COG1061 142 FLGNEFGLIIFDEVHHLPAPS----YRRILELLSAAYPRL----GLTATPEREDGGRIGDLFDLIGPIVY---------- 203 (442)
T ss_pred hcccccCEEEEEccccCCcHH----HHHHHHhhhccccee----eeccCceeecCCchhHHHHhcCCeEe----------
Confidence 334479999999999987643 333444443332 44 89999764321 11110000000000
Q ss_pred cCCChHHHHHHHHhh-hcCCCccccee-ehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccc
Q psy10680 279 DMGFEPQIRKIIQMT-RHAHPVVPVSL-FISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRF 356 (537)
Q Consensus 279 ~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (537)
...+...+... ........... ............... ...... .... ..........
T Consensus 204 ----~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~---~~~~~~---~~~~-----~~~~~~~~~~------ 262 (442)
T COG1061 204 ----EVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESAR---FRELLR---ARGT-----LRAENEARRI------ 262 (442)
T ss_pred ----ecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhh---hhhhhh---hhhh-----hhHHHHHHHH------
Confidence 00111111100 00000000000 000000000000000 000000 0000 0000000000
Q ss_pred cceeechhhHHHHHHhH---hCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEe
Q psy10680 357 NTCVFLGYVLYFWFILV---AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIAS 433 (537)
Q Consensus 357 ~~~~~~~~~~~~~~~~~---~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT 433 (537)
................ .+.+.++|+....++..+ +..+...+. +..+.|..+..+|..+++.|+.|.+++||++
T Consensus 263 -~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i-~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~ 339 (442)
T COG1061 263 -AIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEI-AKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTV 339 (442)
T ss_pred -hhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHH-HHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 0000111111111111 456778999999999999 777776666 7789999999999999999999999999999
Q ss_pred cccccCCCcCCccEEEEecCCCChhhhHhhhhcccC
Q psy10680 434 DVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTAR 469 (537)
Q Consensus 434 ~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR 469 (537)
.++.+|+|+|+++++|..+++.|...|.||+||.-|
T Consensus 340 ~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 340 KVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred eeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2.2e-26 Score=239.86 Aligned_cols=349 Identities=19% Similarity=0.165 Sum_probs=202.4
Q ss_pred EEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHH
Q psy10680 64 IGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTREL 143 (537)
Q Consensus 64 li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L 143 (537)
++.||||||||.+ |+..+... +.. |.++||++|+++|
T Consensus 1 LL~g~TGsGKT~v-----------------------------------~l~~i~~~-l~~-------g~~vLvlvP~i~L 37 (505)
T TIGR00595 1 LLFGVTGSGKTEV-----------------------------------YLQAIEKV-LAL-------GKSVLVLVPEIAL 37 (505)
T ss_pred CccCCCCCCHHHH-----------------------------------HHHHHHHH-HHc-------CCeEEEEeCcHHH
Confidence 5789999999999 54433333 322 5679999999999
Q ss_pred HHHHHHHHHHhcccceeeEEEEEcCcchhHh---HHHhc-cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhh
Q psy10680 144 AQQIQAVISIFSRTMRIRHACLYGGTSKMYQ---TRDLC-RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD 219 (537)
Q Consensus 144 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~ 219 (537)
+.|+.+.++..+ +.++..++++.+..++ |..+. .+.+|||||+..+. ..+.++++|||||+|....
T Consensus 38 ~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sy 107 (505)
T TIGR00595 38 TPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSY 107 (505)
T ss_pred HHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCcccc
Confidence 999999998654 4567888888765544 33332 35799999997664 3678899999999999765
Q ss_pred CCC------hHHHHHHHhhccccccccCCceeecCchhH-HHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHh
Q psy10680 220 MGF------EPQIRKIIQMTRTRDLCRGAEIVVATPGRL-IDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 292 (537)
Q Consensus 220 ~~~------~~~l~~il~~~~~~~~~~~~~~~saTp~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (537)
++. ...+............+ +.||||..- .......... .+.+.+ +...... +.+ .++..
T Consensus 108 kq~~~p~y~ar~~a~~ra~~~~~~vi----l~SATPsles~~~~~~g~~~-----~~~l~~--r~~~~~~-p~v-~vid~ 174 (505)
T TIGR00595 108 KQEEGPRYHARDVAVYRAKKFNCPVV----LGSATPSLESYHNAKQKAYR-----LLVLTR--RVSGRKP-PEV-KLIDM 174 (505)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCEE----EEeCCCCHHHHHHHhcCCeE-----Eeechh--hhcCCCC-CeE-EEEec
Confidence 431 11222333333333344 889996532 2222111111 000000 0000000 000 00000
Q ss_pred hhcCCCcccceeehhhhHHHHHHHHhhcc---ccccce---eeeecchhhhhhcCCChhHHHHHhhhccccceeechhhH
Q psy10680 293 TRHAHPVVPVSLFISERRDTILHFLESGT---TNVNRI---TYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVL 366 (537)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (537)
...... ......-.+.+...+.... -..++. ..+.|..+.....+..+.....+....+.-.|..+++..
T Consensus 175 -~~~~~~---~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~ 250 (505)
T TIGR00595 175 -RKEPRQ---SFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQE 250 (505)
T ss_pred -cccccc---CCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcC
Confidence 000000 0001111222222222211 111111 234566666666666665555554445555666666665
Q ss_pred HHHHHhHhCce-eEEEEeeccCcccccccccccc--ccccccccCCCCHHHH--HHHHHHHhcCCCcEEEEecccccCCC
Q psy10680 367 YFWFILVAGIE-RWVFMEINHNGTETKHYGVSSS--LYRAMGIHGDKSQWNR--DQTLRDFRSGYINVLIASDVASRGLD 441 (537)
Q Consensus 367 ~~~~~~~~~~~-~~if~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~~~~r--~~~~~~f~~g~~~iLvaT~~l~~Gid 441 (537)
.....++.+.. .+... ....+.+ ...+... +.++..+|++++...+ ..+++.|++|+.+|||+|+++++|+|
T Consensus 251 ~~~~~Cp~C~s~~l~~~--g~Gte~~-~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d 327 (505)
T TIGR00595 251 PIPKTCPQCGSEDLVYK--GYGTEQV-EEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHH 327 (505)
T ss_pred CCCCCCCCCCCCeeEee--cccHHHH-HHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCC
Confidence 54444444433 22221 1111222 3333333 4677889999887655 88999999999999999999999999
Q ss_pred cCCccEEEEecCCC------------ChhhhHhhhhcccCCCCCceeEEEecCCCc
Q psy10680 442 VEDIKYVVNYDFPD------------NTENYVHRIGRTARSTKTGISYTLFTPLNG 485 (537)
Q Consensus 442 i~~~~~Vi~~d~p~------------s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~ 485 (537)
+|++++|+.+|.+. ....|.|++||+||.+..|.+++.....+.
T Consensus 328 ~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~ 383 (505)
T TIGR00595 328 FPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNH 383 (505)
T ss_pred CCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCC
Confidence 99999997555431 245789999999999999999876655443
No 83
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=1.3e-25 Score=241.77 Aligned_cols=322 Identities=20% Similarity=0.216 Sum_probs=214.9
Q ss_pred ehhhhhhcccccCCCCCCChhhhhhhhccccC------CcEEEEccCCCccccccccccchhccccccCCCCCccccccc
Q psy10680 29 ASDVASRGLGKNSGYGKPTSIQAQSWPICLSG------RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSW 102 (537)
Q Consensus 29 ~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~------~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (537)
+.......+...++| ..|+-|..||..+.+. +|-+|||.-|.|||.+
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEV-------------------------- 631 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEV-------------------------- 631 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHH--------------------------
Confidence 344555566667788 8899999999998855 5899999999999999
Q ss_pred ccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh---c
Q psy10680 103 WNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL---C 179 (537)
Q Consensus 103 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ 179 (537)
.+-++...+.. |++|.++|||.-|++|.++.|+.-+..+++++..+.--.+..++...+ .
T Consensus 632 ---------AmRAAFkAV~~--------GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la 694 (1139)
T COG1197 632 ---------AMRAAFKAVMD--------GKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLA 694 (1139)
T ss_pred ---------HHHHHHHHhcC--------CCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHh
Confidence 55555555443 778999999999999999999998899999998887766666655443 2
Q ss_pred -cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCc-hhHHHHhh
Q psy10680 180 -RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATP-GRLIDFLE 257 (537)
Q Consensus 180 -~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp-~~~~~~l~ 257 (537)
...||||||. .|-++.+.+.++.++|+||-|++.-. -.+-++.++. ...+.-+|||| +|++.+.-
T Consensus 695 ~G~vDIvIGTH-----rLL~kdv~FkdLGLlIIDEEqRFGVk-----~KEkLK~Lr~---~VDvLTLSATPIPRTL~Msm 761 (1139)
T COG1197 695 EGKVDIVIGTH-----RLLSKDVKFKDLGLLIIDEEQRFGVK-----HKEKLKELRA---NVDVLTLSATPIPRTLNMSL 761 (1139)
T ss_pred cCCccEEEech-----HhhCCCcEEecCCeEEEechhhcCcc-----HHHHHHHHhc---cCcEEEeeCCCCcchHHHHH
Confidence 3689999995 33445678999999999999996432 2222222222 12233678984 44444322
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
...-.++ -.........++..+..+..+.++.-.
T Consensus 762 ~GiRdlS--------------------------vI~TPP~~R~pV~T~V~~~d~~~ireA-------------------- 795 (1139)
T COG1197 762 SGIRDLS--------------------------VIATPPEDRLPVKTFVSEYDDLLIREA-------------------- 795 (1139)
T ss_pred hcchhhh--------------------------hccCCCCCCcceEEEEecCChHHHHHH--------------------
Confidence 2111111 000000011112222222221111110
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccc--ccccccccCCCCHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSS--LYRAMGIHGDKSQWNR 415 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~~~~r 415 (537)
+......+...+-..+.....+.. +..+... ..++...||.|+..+-
T Consensus 796 ------------------------------I~REl~RgGQvfYv~NrV~~Ie~~-~~~L~~LVPEarI~vaHGQM~e~eL 844 (1139)
T COG1197 796 ------------------------------ILRELLRGGQVFYVHNRVESIEKK-AERLRELVPEARIAVAHGQMREREL 844 (1139)
T ss_pred ------------------------------HHHHHhcCCEEEEEecchhhHHHH-HHHHHHhCCceEEEEeecCCCHHHH
Confidence 011112222222223333333333 3333322 1346668999999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCC-CChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 416 DQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFP-DNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 416 ~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p-~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
..++..|-.|+++|||||.+++.|||+|++|.+|..+.. .-.....|..||+||.++.++|++++.+.+
T Consensus 845 E~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 845 EEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred HHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 999999999999999999999999999999999987765 368889999999999999999999998753
No 84
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.93 E-value=2.7e-25 Score=243.15 Aligned_cols=123 Identities=21% Similarity=0.217 Sum_probs=110.2
Q ss_pred hCceeEEEEeeccCccccccccc-cccccccccccCCCCHHHHHHHHHHHhcC--CCcEEEEecccccCCCcCCccEEEE
Q psy10680 374 AGIERWVFMEINHNGTETKHYGV-SSSLYRAMGIHGDKSQWNRDQTLRDFRSG--YINVLIASDVASRGLDVEDIKYVVN 450 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~iLvaT~~l~~Gidi~~~~~Vi~ 450 (537)
.+.+.+|||.+...+..+ ...| ...|+++..+||+|+..+|.++++.|+++ ..+|||||+++++|+|++.+++||+
T Consensus 492 ~~~KvLVF~~~~~t~~~L-~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 492 RSEKVLVICAKAATALQL-EQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred CCCeEEEEeCcHHHHHHH-HHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE
Confidence 367889999999999999 6777 56799999999999999999999999974 6999999999999999999999999
Q ss_pred ecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 451 YDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 451 ~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
||.|+++..|.||+||+||.|+++.+.+++..........+.+.+.+
T Consensus 571 fDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 571 FDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred ecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 99999999999999999999999988877777666666777776665
No 85
>KOG0947|consensus
Probab=99.93 E-value=1.8e-25 Score=231.88 Aligned_cols=364 Identities=16% Similarity=0.135 Sum_probs=224.0
Q ss_pred cCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHh
Q psy10680 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYH 119 (537)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 119 (537)
.++| .|-.+|++|+.++.+|.+|+|.|+|.+|||.++- |.+++.+.
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAE---------------------------------YAialaq~ 338 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAE---------------------------------YAIALAQK 338 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHH---------------------------------HHHHHHHh
Confidence 3556 8899999999999999999999999999999844 33333322
Q ss_pred hhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcC
Q psy10680 120 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESG 199 (537)
Q Consensus 120 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~ 199 (537)
++-+++|..|-++|.+|-++.|+.-++..| .++|+.... .++..+|+|.+.|.++|.++
T Consensus 339 ----------h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg----LlTGDvqin-------PeAsCLIMTTEILRsMLYrg 397 (1248)
T KOG0947|consen 339 ----------HMTRTIYTSPIKALSNQKFRDFKETFGDVG----LLTGDVQIN-------PEASCLIMTTEILRSMLYRG 397 (1248)
T ss_pred ----------hccceEecchhhhhccchHHHHHHhccccc----eeecceeeC-------CCcceEeehHHHHHHHHhcc
Confidence 145599999999999999999997766444 677765543 56789999999999999999
Q ss_pred cccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC---chhHHHHhhhCCcccccceeeeccchh
Q psy10680 200 TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT---PGRLIDFLESGTTNVNRITYLVLDEAD 275 (537)
Q Consensus 200 ~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT---p~~~~~~l~~~~~~~~~~~~~~~~~~~ 275 (537)
....+++.+|||||+|.+.+..++-.+++++-++|. ...+ ++||| +.++.+|+.. ..+....++....
T Consensus 398 adliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~I----lLSATVPN~~EFA~WIGR----tK~K~IyViST~k 469 (1248)
T KOG0947|consen 398 ADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFI----LLSATVPNTLEFADWIGR----TKQKTIYVISTSK 469 (1248)
T ss_pred cchhhccceEEEeeeeecccccccccceeeeeeccccceEE----EEeccCCChHHHHHHhhh----ccCceEEEEecCC
Confidence 999999999999999999999999999999999988 4555 89999 3445666543 2222222332211
Q ss_pred hhhcC--CC--hHHHHHHHHh--------hhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCC
Q psy10680 276 RMLDM--GF--EPQIRKIIQM--------TRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGF 343 (537)
Q Consensus 276 ~~~~~--~~--~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (537)
+.... .+ ...+..++.. ......... +.......-.........-.. ...+......
T Consensus 470 RPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~-------~~ak~~~~~~~~~~~~rgs~~---~ggk~~~~~g- 538 (1248)
T KOG0947|consen 470 RPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK-------KEAKFVDVEKSDARGGRGSQK---RGGKTNYHNG- 538 (1248)
T ss_pred CccceEEEEEeccceehhhcccchhhhhcchhhhhhhc-------ccccccccccccccccccccc---cCCcCCCCCC-
Confidence 11000 00 0000000000 000000000 000000000000000000000 0000000000
Q ss_pred hhHHHHHhhhccccceeechhhHHHHH--HhHhCceeEEEEeeccCccccccccccccc---------------------
Q psy10680 344 EPQIRKIIQMTRFNTCVFLGYVLYFWF--ILVAGIERWVFMEINHNGTETKHYGVSSSL--------------------- 400 (537)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~if~~~~~~~~~l~~~~l~~~~--------------------- 400 (537)
.+.....-. ++.. . ...+..+. ....--..++||.+++.+++- +..+...+
T Consensus 539 ~~r~~~~~~-nrr~---~-~~~l~lin~L~k~~lLP~VvFvFSkkrCde~-a~~L~~~nL~~~~EKseV~lfl~k~~~rL 612 (1248)
T KOG0947|consen 539 GSRGSGIGK-NRRK---Q-PTWLDLINHLRKKNLLPVVVFVFSKKRCDEY-ADYLTNLNLTDSKEKSEVHLFLSKAVARL 612 (1248)
T ss_pred Ccccccccc-cccc---c-chHHHHHHHHhhcccCceEEEEEccccHHHH-HHHHhccCcccchhHHHHHHHHHHHHHhc
Confidence 000000000 0000 0 11122221 122334667999888888664 32222211
Q ss_pred ------------------cccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE----ec----CC
Q psy10680 401 ------------------YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN----YD----FP 454 (537)
Q Consensus 401 ------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~----~d----~p 454 (537)
..+..+|||+-+--+.-++-.|..|-++||+||.++++|+|.|+-++|+. .| .-
T Consensus 613 k~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~ 692 (1248)
T KOG0947|consen 613 KGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRE 692 (1248)
T ss_pred ChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceee
Confidence 12334799999999999999999999999999999999999997666652 11 12
Q ss_pred CChhhhHhhhhcccCCCC--CceeEEEecCC
Q psy10680 455 DNTENYVHRIGRTARSTK--TGISYTLFTPL 483 (537)
Q Consensus 455 ~s~~~~~Q~~GRagR~~~--~g~~~~l~~~~ 483 (537)
..+-+|.||+|||||.|- .|++++++...
T Consensus 693 L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 693 LLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred cCChhHHhhhccccccccCcCceEEEEecCC
Confidence 468899999999999986 57888777764
No 86
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.93 E-value=7e-25 Score=204.44 Aligned_cols=184 Identities=50% Similarity=0.743 Sum_probs=157.2
Q ss_pred cceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccc
Q psy10680 24 INVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWW 103 (537)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (537)
|+...+++.+.+.|.+ .|++.|+++|.++++.+.+|+++++++|||+|||++
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~--------------------------- 52 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAA--------------------------- 52 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHH---------------------------
Confidence 4566788888889964 899999999999999999999999999999999999
Q ss_pred cCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCc
Q psy10680 104 NNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAE 183 (537)
Q Consensus 104 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 183 (537)
|++|++..+.... ...+++++|++|+++|+.|+...++.+....++.+..++|+....+....+..+++
T Consensus 53 --------~~~~~l~~~~~~~---~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (203)
T cd00268 53 --------FLIPILEKLDPSP---KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPH 121 (203)
T ss_pred --------HHHHHHHHHHhhc---ccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCC
Confidence 8888888877642 12367899999999999999999999887778889999998887666666666899
Q ss_pred EEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecCch
Q psy10680 184 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVATPG 250 (537)
Q Consensus 184 Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saTp~ 250 (537)
|+|+||+.+...+......+.+++++|+||+|++.+..+...+..+...++. .+.. ++|||++
T Consensus 122 iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~----~~SAT~~ 185 (203)
T cd00268 122 IVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTL----LFSATMP 185 (203)
T ss_pred EEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEE----EEeccCC
Confidence 9999999999999888888899999999999999988888888888877664 3344 8899944
No 87
>KOG0951|consensus
Probab=99.93 E-value=8.2e-26 Score=239.67 Aligned_cols=379 Identities=15% Similarity=0.153 Sum_probs=224.0
Q ss_pred cceeeehhhhhhcccccCCCCCCChhhhhhhhccccC-CcEEEEccCCCccccccccccchhccccccCCCCCccccccc
Q psy10680 24 INVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSG-RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSW 102 (537)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~-~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (537)
|.-+-++.+...++ +|...+.++|.....+.+.+ .++++|||||+|||-+
T Consensus 291 ~~iselP~Wnq~aF---~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNV-------------------------- 341 (1674)
T KOG0951|consen 291 VKISELPKWNQPAF---FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNV-------------------------- 341 (1674)
T ss_pred EeecCCcchhhhhc---ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHH--------------------------
Confidence 33344444455555 57788999999999988877 4999999999999999
Q ss_pred ccCccccccchhhHhHhhhcCCCCCC---CCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 103 WNNNVVDVKYILPALYHILKMPKLEE---GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 103 ~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
.++.+++.+....+... -...+++|++|.++|+.++...+.+....+|+.|...+|+.....+.-
T Consensus 342 ---------AvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi--- 409 (1674)
T KOG0951|consen 342 ---------AVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI--- 409 (1674)
T ss_pred ---------HHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh---
Confidence 77777777765543111 124589999999999999999998888889999999999866332211
Q ss_pred cCCcEEEeCCchhHHHHhcC--cccccceeEEEecchhhhhhCCChHHHHHHHhhccc----cccccCCceeecC-chh-
Q psy10680 180 RGAEIVVATPGRLIDFLESG--TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT----RDLCRGAEIVVAT-PGR- 251 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~--~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~----~~~~~~~~~~saT-p~~- 251 (537)
.+.+|+|||||++.-.-++. ....+-++++|+||.|.+.+. +++.+..+...... .........+||| |..
T Consensus 410 eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~ 488 (1674)
T KOG0951|consen 410 EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYE 488 (1674)
T ss_pred hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchh
Confidence 36899999999985443321 123456789999999988664 77888777765444 2333445588999 432
Q ss_pred -HHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeee
Q psy10680 252 -LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYL 330 (537)
Q Consensus 252 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (537)
...|+.... . ....++..- ....+..+...+... .+...+ ....+.....+-...
T Consensus 489 DV~~Fl~v~~---~--glf~fd~sy--RpvPL~qq~Igi~ek-------~~~~~~-qamNe~~yeKVm~~a--------- 544 (1674)
T KOG0951|consen 489 DVASFLRVDP---E--GLFYFDSSY--RPVPLKQQYIGITEK-------KPLKRF-QAMNEACYEKVLEHA--------- 544 (1674)
T ss_pred hhHHHhccCc---c--cccccCccc--CcCCccceEeccccC-------CchHHH-HHHHHHHHHHHHHhC---------
Confidence 122222111 0 000000000 000000011100000 000000 000111111110000
Q ss_pred ecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhC----------ceeEEEEeeccCccccccccccc-c
Q psy10680 331 VLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAG----------IERWVFMEINHNGTETKHYGVSS-S 399 (537)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~if~~~~~~~~~l~~~~l~~-~ 399 (537)
...+.++|....+....++..+..-+..... ++.|.-+. +...+..-+.. .
T Consensus 545 --------------gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrte----a~~~kn~dLkdLL 606 (1674)
T KOG0951|consen 545 --------------GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTE----AGQAKNPDLKDLL 606 (1674)
T ss_pred --------------CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhh----hhcccChhHHHHh
Confidence 0122333333333333333333322211111 11111111 11111111111 1
Q ss_pred ccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEE----EecC------CCChhhhHhhhhcccC
Q psy10680 400 LYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVV----NYDF------PDNTENYVHRIGRTAR 469 (537)
Q Consensus 400 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi----~~d~------p~s~~~~~Q~~GRagR 469 (537)
.+.+..+|+||+..+|..+++.|+.|+++++|+|.++++|+|+|+-+++| .||+ +.++.+..||.|||||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGR 686 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCC
Confidence 24566789999999999999999999999999999999999999877777 4553 4589999999999999
Q ss_pred CCCC--ceeEEEecCCCcc
Q psy10680 470 STKT--GISYTLFTPLNGN 486 (537)
Q Consensus 470 ~~~~--g~~~~l~~~~~~~ 486 (537)
.+.. |.+++..+.++..
T Consensus 687 p~~D~~gegiiit~~se~q 705 (1674)
T KOG0951|consen 687 PQYDTCGEGIIITDHSELQ 705 (1674)
T ss_pred CccCcCCceeeccCchHhh
Confidence 7654 5555555554433
No 88
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.92 E-value=7.3e-25 Score=242.95 Aligned_cols=309 Identities=18% Similarity=0.221 Sum_probs=187.0
Q ss_pred ChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCC
Q psy10680 47 TSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKL 126 (537)
Q Consensus 47 ~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 126 (537)
+..-.+.+..+..++.++|+|+||||||.. +|.+..-...
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTq-------------------------------------lPq~lle~g~--- 115 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQ-------------------------------------LPKICLELGR--- 115 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHH-------------------------------------HHHHHHHcCC---
Confidence 334445556666777888999999999964 4432221111
Q ss_pred CCCCCceEEEEcc----cHHHHHHHHHHHHH-hcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcc
Q psy10680 127 EEGDGPIALVLAP----TRELAQQIQAVISI-FSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTT 201 (537)
Q Consensus 127 ~~~~~~~~lil~P----t~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 201 (537)
+..+.+++.-| +++|+.++++++.. ++...|+.+ ..+. ....+++|+++||+.|+..+....
T Consensus 116 --g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v-------rf~~---~~s~~t~I~v~TpG~LL~~l~~d~- 182 (1294)
T PRK11131 116 --GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV-------RFND---QVSDNTMVKLMTDGILLAEIQQDR- 182 (1294)
T ss_pred --CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee-------cCcc---ccCCCCCEEEEChHHHHHHHhcCC-
Confidence 11223444556 56888888888764 333223221 1111 123578999999999999887644
Q ss_pred cccceeEEEecchh-hhhhCCChH-HHHHHHhhccccccccCCceeecC--chhHHHHhhhCCcccccceeeeccchhhh
Q psy10680 202 NVNRITYLVLDEAD-RMLDMGFEP-QIRKIIQMTRTRDLCRGAEIVVAT--PGRLIDFLESGTTNVNRITYLVLDEADRM 277 (537)
Q Consensus 202 ~~~~l~liV~DE~h-~~~~~~~~~-~l~~il~~~~~~~~~~~~~~~saT--p~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 277 (537)
.++++++||+|||| ++++.+|.. .+..++...+..+.+ ++||| +..+..++.... + +.... ..
T Consensus 183 ~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvI----LmSATid~e~fs~~F~~ap-----v--I~V~G--r~ 249 (1294)
T PRK11131 183 LLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVI----ITSATIDPERFSRHFNNAP-----I--IEVSG--RT 249 (1294)
T ss_pred ccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEE----EeeCCCCHHHHHHHcCCCC-----E--EEEcC--cc
Confidence 48999999999999 466665543 244443333334444 99999 334443332211 0 00000 00
Q ss_pred hcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhcccc
Q psy10680 278 LDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFN 357 (537)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (537)
+ .+. ..+...... ......+.+...+
T Consensus 250 ----~--pVe-------i~y~p~~~~-~~~~~~d~l~~ll---------------------------------------- 275 (1294)
T PRK11131 250 ----Y--PVE-------VRYRPIVEE-ADDTERDQLQAIF---------------------------------------- 275 (1294)
T ss_pred ----c--cce-------EEEeecccc-cchhhHHHHHHHH----------------------------------------
Confidence 0 000 000000000 0000000000000
Q ss_pred ceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccc---cccccCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy10680 358 TCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYR---AMGIHGDKSQWNRDQTLRDFRSGYINVLIASD 434 (537)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~ 434 (537)
..+..+ ........+||+.....+..+ +..|...+++ +..+||+++..+|..+++. .|..+|||||+
T Consensus 276 ------~~V~~l-~~~~~GdILVFLpg~~EIe~l-ae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATN 345 (1294)
T PRK11131 276 ------DAVDEL-GREGPGDILIFMSGEREIRDT-ADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATN 345 (1294)
T ss_pred ------HHHHHH-hcCCCCCEEEEcCCHHHHHHH-HHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEecc
Confidence 000000 012234456999999988888 7777665553 6689999999999999875 47889999999
Q ss_pred ccccCCCcCCccEEEEecC---------------C---CChhhhHhhhhcccCCCCCceeEEEecCCCcc
Q psy10680 435 VASRGLDVEDIKYVVNYDF---------------P---DNTENYVHRIGRTARSTKTGISYTLFTPLNGN 486 (537)
Q Consensus 435 ~l~~Gidi~~~~~Vi~~d~---------------p---~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~ 486 (537)
++++|||+|++++||++|. | .|..+|.||+|||||. .+|.|+.++++.+..
T Consensus 346 IAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 346 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred HHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 9999999999999999862 3 3557899999999999 789999999986543
No 89
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.1e-24 Score=232.56 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=136.7
Q ss_pred ccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
..+|| .|.++|++|+..+.+|.+|+++||||+|||++ ...++..
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvV-----------------------------------aeyAi~~ 157 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVV-----------------------------------AEYAIAL 157 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchH-----------------------------------HHHHHHH
Confidence 45777 89999999999999999999999999999998 3333333
Q ss_pred hhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhc
Q psy10680 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLES 198 (537)
Q Consensus 119 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 198 (537)
.+.. +.+++|..|.++|.+|.++.+...++...--++.++|+.+.. .++.++|+|.+.|.+++..
T Consensus 158 al~~--------~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyr 222 (1041)
T COG4581 158 ALRD--------GQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYR 222 (1041)
T ss_pred HHHc--------CCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecceeeC-------CCCceEEeeHHHHHHHhcc
Confidence 3332 445999999999999999999876653322245666765544 5788999999999999999
Q ss_pred CcccccceeEEEecchhhhhhCCChHHHHHHHhhcccc-ccccCCceeecC---chhHHHHhhhC
Q psy10680 199 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTR-DLCRGAEIVVAT---PGRLIDFLESG 259 (537)
Q Consensus 199 ~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~-~~~~~~~~~saT---p~~~~~~l~~~ 259 (537)
+...+.++..|||||+|.+.+...+..++.++-.++.. +.+ ++||| |.++..|+...
T Consensus 223 g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v----~LSATv~N~~EF~~Wi~~~ 283 (1041)
T COG4581 223 GSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFV----FLSATVPNAEEFAEWIQRV 283 (1041)
T ss_pred CcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEE----EEeCCCCCHHHHHHHHHhc
Confidence 98899999999999999999999999999999999873 555 99999 77778888753
No 90
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=4.6e-24 Score=238.68 Aligned_cols=346 Identities=17% Similarity=0.220 Sum_probs=189.7
Q ss_pred CCChhhhhhhhccc----cC-CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHh
Q psy10680 45 KPTSIQAQSWPICL----SG-RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYH 119 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~----~~-~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 119 (537)
.++++|.+|+..+. .| +++++++|||||||++ .+.++..
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~t------------------------------------ai~li~~ 456 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRT------------------------------------AIALMYR 456 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHH------------------------------------HHHHHHH
Confidence 68999999997765 23 5899999999999987 3334455
Q ss_pred hhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcC
Q psy10680 120 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESG 199 (537)
Q Consensus 120 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~ 199 (537)
+..... .+++|||||+++|+.|+...++.+.......+..+++...... .....+..|+|+|.+++.+.+...
T Consensus 457 L~~~~~-----~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~ 529 (1123)
T PRK11448 457 LLKAKR-----FRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYS 529 (1123)
T ss_pred HHhcCc-----cCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhcc
Confidence 543321 4579999999999999999998764322211111111100000 011235789999999998765321
Q ss_pred -----cccccceeEEEecchhhhhhC---------------CChHHHHHHHhhccccccccCCceeecCchhHH-HHhhh
Q psy10680 200 -----TTNVNRITYLVLDEADRMLDM---------------GFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLI-DFLES 258 (537)
Q Consensus 200 -----~~~~~~l~liV~DE~h~~~~~---------------~~~~~l~~il~~~~~~~~~~~~~~~saTp~~~~-~~l~~ 258 (537)
...+..+++||+||||+.... .+...++.++.+... ..+ .+||||.+.. .++..
T Consensus 530 ~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA-~~I----GLTATP~r~t~~~FG~ 604 (1123)
T PRK11448 530 DDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDA-VKI----GLTATPALHTTEIFGE 604 (1123)
T ss_pred ccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCc-cEE----EEecCCccchhHHhCC
Confidence 245678999999999995310 013566777775532 233 8999986421 11110
Q ss_pred CCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCC--Cccccee-ehh-----hhHHHHHHHHhhccccccceeee
Q psy10680 259 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAH--PVVPVSL-FIS-----ERRDTILHFLESGTTNVNRITYL 330 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 330 (537)
.+.... +.+.+..-.-.. ....... +.. ..... ............ ...+
T Consensus 605 ------pv~~Ys---------------l~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~-~~~~~~~~~~i~-~~~l 661 (1123)
T PRK11448 605 ------PVYTYS---------------YREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEE-VEVINTQTGEID-LATL 661 (1123)
T ss_pred ------eeEEee---------------HHHHHhcCCcccCcCCEEEEEEeccccccccccch-hhhcchhhhhhh-hccC
Confidence 011000 111111100000 0000000 000 00000 000000000000 0000
Q ss_pred ecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccc------c---c
Q psy10680 331 VLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSS------L---Y 401 (537)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~------~---~ 401 (537)
-+.. ... .......+.....+.. +...+..........+.+|||.+..++..+ ...+... + .
T Consensus 662 -~d~~----~~~-~~~~~~~vi~~~~~~~--i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i-~~~L~~~f~~~~~~~~~~ 732 (1123)
T PRK11448 662 -EDEV----DFE-VEDFNRRVITESFNRV--VCEELAKYLDPTGEGKTLIFAATDAHADMV-VRLLKEAFKKKYGQVEDD 732 (1123)
T ss_pred -cHHH----hhh-HHHHHHHHhhHHHHHH--HHHHHHHHHhccCCCcEEEEEcCHHHHHHH-HHHHHHHHHhhcCCcCcc
Confidence 0000 000 0000011111111100 111111111112236888999999988766 4333221 1 2
Q ss_pred ccccccCCCCHHHHHHHHHHHhcCCC-cEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCC
Q psy10680 402 RAMGIHGDKSQWNRDQTLRDFRSGYI-NVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTK 472 (537)
Q Consensus 402 ~~~~~~~~~~~~~r~~~~~~f~~g~~-~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~ 472 (537)
.+..+||+++ ++..++++|+++.. +|+|+++++.+|+|+|.+.+||+++++.|...|+||+||+.|...
T Consensus 733 ~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 733 AVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred ceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 3445788875 46779999999876 699999999999999999999999999999999999999999644
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.91 E-value=7.5e-23 Score=222.77 Aligned_cols=334 Identities=15% Similarity=0.130 Sum_probs=188.8
Q ss_pred CCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhc
Q psy10680 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILK 122 (537)
Q Consensus 43 ~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 122 (537)
...|+|+|..+.........+++.||||+|||.+ .+.. ...+..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEA-----------------------------------AL~~-A~~l~~ 327 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEA-----------------------------------ALAY-AWRLID 327 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHH-----------------------------------HHHH-HHHHHH
Confidence 3489999998865544456799999999999998 4333 333333
Q ss_pred CCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc--eeeEEEEEcCcchhH-----------------------hHHH
Q psy10680 123 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM--RIRHACLYGGTSKMY-----------------------QTRD 177 (537)
Q Consensus 123 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----------------------~~~~ 177 (537)
.. ....++|..||++.++|++.+++.+.... ...+...+|...... .|..
T Consensus 328 ~~-----~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 402 (878)
T PRK09694 328 QG-----LADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLS 402 (878)
T ss_pred hC-----CCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHh
Confidence 21 13469999999999999999987533221 345666666543111 1111
Q ss_pred -hcc---CCcEEEeCCchhHHH-HhcCcccccce----eEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC
Q psy10680 178 -LCR---GAEIVVATPGRLIDF-LESGTTNVNRI----TYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT 248 (537)
Q Consensus 178 -l~~---~~~Ivv~Tp~~l~~~-l~~~~~~~~~l----~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT 248 (537)
..+ -.+|+|||...++.. +..+...+..+ ++|||||+|.+-. .....+..++..+.. ....+.++|||
T Consensus 403 ~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~--~g~~vIllSAT 479 (878)
T PRK09694 403 QSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQ--AGGSVILLSAT 479 (878)
T ss_pred hhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhCCH-HHHHHHHHHHHHHHh--cCCcEEEEeCC
Confidence 011 268999999777743 33322233333 4899999998632 233445555554332 22334599999
Q ss_pred -chhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccce
Q psy10680 249 -PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRI 327 (537)
Q Consensus 249 -p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (537)
|......+.......... .... .+ +.+... .. . ...... +..........
T Consensus 480 LP~~~r~~L~~a~~~~~~~---~~~~-------~Y-Plvt~~-~~---~-~~~~~~-------------~~~~~~~~~~~ 530 (878)
T PRK09694 480 LPATLKQKLLDTYGGHDPV---ELSS-------AY-PLITWR-GV---N-GAQRFD-------------LSAHPEQLPAR 530 (878)
T ss_pred CCHHHHHHHHHHhcccccc---cccc-------cc-cccccc-cc---c-cceeee-------------ccccccccCcc
Confidence 666555443311000000 0000 00 000000 00 0 000000 00000000000
Q ss_pred eeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHH-HHHhHhCceeEEEEeeccCccccccccccccc---ccc
Q psy10680 328 TYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYF-WFILVAGIERWVFMEINHNGTETKHYGVSSSL---YRA 403 (537)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~---~~~ 403 (537)
.......... . ........+.. ......+...+|||++...+..+ ...+...+ .++
T Consensus 531 ~~v~v~~~~~--~-----------------~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~l-y~~L~~~~~~~~~v 590 (878)
T PRK09694 531 FTIQLEPICL--A-----------------DMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKL-YQRLKELNNTQVDI 590 (878)
T ss_pred eEEEEEeecc--c-----------------cccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHH-HHHHHhhCCCCceE
Confidence 0000000000 0 00000001111 11223456677999999999998 55554433 568
Q ss_pred ccccCCCCHHHHH----HHHHHH-hcCC---CcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCC
Q psy10680 404 MGIHGDKSQWNRD----QTLRDF-RSGY---INVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTK 472 (537)
Q Consensus 404 ~~~~~~~~~~~r~----~~~~~f-~~g~---~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~ 472 (537)
..+||.+...+|. ++++.| ++|+ ..|||||+++++|+|+ +++++|....| ...++||+||+||.+.
T Consensus 591 ~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 591 DLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 8899999999984 566777 6665 4799999999999999 68999998888 6799999999999875
No 92
>KOG0948|consensus
Probab=99.91 E-value=4.9e-24 Score=216.20 Aligned_cols=357 Identities=15% Similarity=0.141 Sum_probs=216.7
Q ss_pred ccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
+.+.| .+-|+|..|+..+-++.+|+|.|.|.+|||.++ -.++..
T Consensus 124 k~YPF-~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVA-----------------------------------eYAIA~ 167 (1041)
T KOG0948|consen 124 KTYPF-TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVA-----------------------------------EYAIAM 167 (1041)
T ss_pred cCCCc-ccCchHhhhhhhhcCCceEEEEeecCCCcchHH-----------------------------------HHHHHH
Confidence 44556 889999999999999999999999999999983 333334
Q ss_pred hhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhc
Q psy10680 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLES 198 (537)
Q Consensus 119 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 198 (537)
.+.. ..++||..|-++|.+|-++++..-++.. +..+|+.+.. .++.-+|+|.+.|.++|.+
T Consensus 168 sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~DV----GLMTGDVTIn-------P~ASCLVMTTEILRsMLYR 228 (1041)
T KOG0948|consen 168 SLRE--------KQRVIYTSPIKALSNQKYRELLEEFKDV----GLMTGDVTIN-------PDASCLVMTTEILRSMLYR 228 (1041)
T ss_pred HHHh--------cCeEEeeChhhhhcchhHHHHHHHhccc----ceeecceeeC-------CCCceeeeHHHHHHHHHhc
Confidence 4433 3459999999999999999998655543 4555655433 3566789999999999999
Q ss_pred CcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-c--hhHHHHhhhCCcccccceeeeccc-
Q psy10680 199 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-P--GRLIDFLESGTTNVNRITYLVLDE- 273 (537)
Q Consensus 199 ~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p--~~~~~~l~~~~~~~~~~~~~~~~~- 273 (537)
+..-+..+.+|||||+|.|-+..++..+.+-+-.+|. .+.. ++||| | ..+.+|+.........+.+.....
T Consensus 229 GSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V----FLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPT 304 (1041)
T KOG0948|consen 229 GSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV----FLSATIPNARQFAEWICHIHKQPCHVVYTDYRPT 304 (1041)
T ss_pred cchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEE----EEeccCCCHHHHHHHHHHHhcCCceEEeecCCCC
Confidence 9999999999999999999999888888887777776 3444 89999 4 344556554332222222221111
Q ss_pred --hhhhhcCCChHHHHHHHHhhhcCCCccc-ceeehhhhHHHHHHHHhhccccccceeeeecchhhhhh-cCCChhHHHH
Q psy10680 274 --ADRMLDMGFEPQIRKIIQMTRHAHPVVP-VSLFISERRDTILHFLESGTTNVNRITYLVLDEADRML-DMGFEPQIRK 349 (537)
Q Consensus 274 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (537)
.+.++..|... + +..+. .+.|-.+........+............---....... .......+-+
T Consensus 305 PLQHyifP~ggdG-l----------ylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~k 373 (1041)
T KOG0948|consen 305 PLQHYIFPAGGDG-L----------YLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYK 373 (1041)
T ss_pred cceeeeecCCCCe-e----------EEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHH
Confidence 11111100000 0 00000 00011111122222222111111000000000000000 0000000111
Q ss_pred HhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccc-----------------------------
Q psy10680 350 IIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSL----------------------------- 400 (537)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~----------------------------- 400 (537)
++. .....+....|||+.+++.++.. +-.+....
T Consensus 374 iVk----------------mi~~~~~~PVIvFSFSkkeCE~~-Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LP 436 (1041)
T KOG0948|consen 374 IVK----------------MIMERNYLPVIVFSFSKKECEAY-ALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELP 436 (1041)
T ss_pred HHH----------------HHHhhcCCceEEEEecHhHHHHH-HHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccch
Confidence 100 01112233444777777666554 22222211
Q ss_pred ----------cccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE----ecCC----CChhhhHh
Q psy10680 401 ----------YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN----YDFP----DNTENYVH 462 (537)
Q Consensus 401 ----------~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~----~d~p----~s~~~~~Q 462 (537)
..+..+|+|+-+--+.-++-.|.+|-+++|.||.+++.|+|.|+-++|+. ||.. -|--+|+|
T Consensus 437 qie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQ 516 (1041)
T KOG0948|consen 437 QIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQ 516 (1041)
T ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEE
Confidence 12334799999999999999999999999999999999999998777763 3321 25668999
Q ss_pred hhhcccCCCCC--ceeEEEecC
Q psy10680 463 RIGRTARSTKT--GISYTLFTP 482 (537)
Q Consensus 463 ~~GRagR~~~~--g~~~~l~~~ 482 (537)
|.|||||.|.. |.+++++++
T Consensus 517 MSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 517 MSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred ecccccccCCCCCceEEEEecC
Confidence 99999999975 667777765
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=8.7e-23 Score=217.75 Aligned_cols=376 Identities=16% Similarity=0.150 Sum_probs=220.9
Q ss_pred cCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHh
Q psy10680 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYH 119 (537)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 119 (537)
..|. .|+++|.-.=-.+.. .-|..++||+|||++ |.+|++..
T Consensus 78 ~lg~-~~ydvQliGg~~Lh~--G~Iaem~TGeGKTL~-----------------------------------a~Lpa~~~ 119 (896)
T PRK13104 78 TLGL-RHFDVQLIGGMVLHE--GNIAEMRTGEGKTLV-----------------------------------ATLPAYLN 119 (896)
T ss_pred HcCC-CcchHHHhhhhhhcc--CccccccCCCCchHH-----------------------------------HHHHHHHH
Confidence 4565 788888766555544 569999999999999 78888866
Q ss_pred hhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchh-HHHHhc
Q psy10680 120 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRL-IDFLES 198 (537)
Q Consensus 120 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~ 198 (537)
.+. |..++|++||+.|+.|.++++..+...+|+.+.+++|+.+...+... ..++|++|||..| ++.|..
T Consensus 120 al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~--y~~dIvygT~grlgfDyLrd 189 (896)
T PRK13104 120 AIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRD 189 (896)
T ss_pred Hhc--------CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHH--hCCCEEEECChhhhHHHHhc
Confidence 653 33489999999999999999999999999999999999877665443 3689999999999 888876
Q ss_pred Cc-ccc-----cceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCc---hhHHHHhhhCCcccccc---
Q psy10680 199 GT-TNV-----NRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATP---GRLIDFLESGTTNVNRI--- 266 (537)
Q Consensus 199 ~~-~~~-----~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp---~~~~~~l~~~~~~~~~~--- 266 (537)
.. ..+ ..+.++|+||+|.++-.. .+ .+.++|..+ ..+...+......+...
T Consensus 190 ~~~~~~~~~v~r~l~~~IvDEaDsiLIDe-----------Ar------tPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~ 252 (896)
T PRK13104 190 NMAFSLTDKVQRELNFAIVDEVDSILIDE-----------AR------TPLIISGAAEDSSELYIKINSLIPQLKKQEEE 252 (896)
T ss_pred CCccchHhhhccccceEEeccHhhhhhhc-----------cC------CceeeeCCCccchHHHHHHHHHHHHHHhcccc
Confidence 52 333 589999999999975321 11 111222221 11111111000000000
Q ss_pred ---eeeeccchhh-h-hcCCChHHHHHHHHhhhcCCC-cccceeehhhhHHHHHHHHhhccccccceeeeecch------
Q psy10680 267 ---TYLVLDEADR-M-LDMGFEPQIRKIIQMTRHAHP-VVPVSLFISERRDTILHFLESGTTNVNRITYLVLDE------ 334 (537)
Q Consensus 267 ---~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 334 (537)
.....++... + +.......+............ .-............+...+.......+...|.+.+.
T Consensus 253 ~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVD 332 (896)
T PRK13104 253 GDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVD 332 (896)
T ss_pred CCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEE
Confidence 0111111111 1 100111111111110000000 000000000111112111211111111111111110
Q ss_pred ---------------hhhhhc-------------------------------CCC-----hhHHHHHhhhc---------
Q psy10680 335 ---------------ADRMLD-------------------------------MGF-----EPQIRKIIQMT--------- 354 (537)
Q Consensus 335 ---------------~~~~~~-------------------------------~~~-----~~~~~~~~~~~--------- 354 (537)
.+..+. +.. +.....++...
T Consensus 333 e~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp 412 (896)
T PRK13104 333 EHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRS 412 (896)
T ss_pred CCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCC
Confidence 000000 000 00011111100
Q ss_pred ----cccceeech------hhH-HHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHh
Q psy10680 355 ----RFNTCVFLG------YVL-YFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFR 423 (537)
Q Consensus 355 ----~~~~~~~~~------~~~-~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 423 (537)
......+.. .++ ........+...+|||.+...++.+ +..|...|++...+|+.+...++..+.+.|+
T Consensus 413 ~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~l-s~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~ 491 (896)
T PRK13104 413 MIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFL-SQLLKKENIKHQVLNAKFHEKEAQIIAEAGR 491 (896)
T ss_pred cceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHH-HHHHHHcCCCeEeecCCCChHHHHHHHhCCC
Confidence 011111111 111 1112335667889999999999999 9999999999999999999999999999999
Q ss_pred cCCCcEEEEecccccCCCcCCcc---------------------------------------EEEEecCCCChhhhHhhh
Q psy10680 424 SGYINVLIASDVASRGLDVEDIK---------------------------------------YVVNYDFPDNTENYVHRI 464 (537)
Q Consensus 424 ~g~~~iLvaT~~l~~Gidi~~~~---------------------------------------~Vi~~d~p~s~~~~~Q~~ 464 (537)
.|. |+|||++++||+|+. +. +||-...+.|-.-=.|..
T Consensus 492 ~G~--VtIATNmAGRGtDI~-Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLr 568 (896)
T PRK13104 492 PGA--VTIATNMAGRGTDIV-LGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLR 568 (896)
T ss_pred CCc--EEEeccCccCCccee-cCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhc
Confidence 995 999999999999985 22 566667788888889999
Q ss_pred hcccCCCCCceeEEEecCCC
Q psy10680 465 GRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 465 GRagR~~~~g~~~~l~~~~~ 484 (537)
||+||-|.+|.+-.|++-.|
T Consensus 569 GRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 569 GRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred cccccCCCCCceEEEEEcCc
Confidence 99999999999988887655
No 94
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.90 E-value=3.4e-23 Score=230.64 Aligned_cols=307 Identities=17% Similarity=0.188 Sum_probs=189.1
Q ss_pred hhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCC
Q psy10680 51 AQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGD 130 (537)
Q Consensus 51 ~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 130 (537)
.+.+..+..++.++|+|+||||||.. +|.+.. .... +.
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq-------------------------------------lPq~ll--e~~~---~~ 110 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ-------------------------------------LPKICL--ELGR---GS 110 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH-------------------------------------HHHHHH--HcCC---CC
Confidence 35556666777889999999999975 343322 1111 11
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcC-cchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEE
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG-TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYL 209 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~li 209 (537)
.+++++.-|.+--+..++..+.... +..++...|. ...+.+ ...++.|.++|++.|+..+.... .++++++|
T Consensus 111 ~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~I 183 (1283)
T TIGR01967 111 HGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTI 183 (1283)
T ss_pred CceEecCCccHHHHHHHHHHHHHHh---CCCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEE
Confidence 3456777888877777776665432 3344444442 111111 23467899999999999886543 47899999
Q ss_pred Eecchhh-hhhCCChH-HHHHHHhhccccccccCCceeecC--chhHHHHhhhCCcccccceeeeccchhhhhcCCChHH
Q psy10680 210 VLDEADR-MLDMGFEP-QIRKIIQMTRTRDLCRGAEIVVAT--PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQ 285 (537)
Q Consensus 210 V~DE~h~-~~~~~~~~-~l~~il~~~~~~~~~~~~~~~saT--p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (537)
||||+|. .++.++.- .+..++...+..+.+ ++||| +..+..++.... + +.... .. +.
T Consensus 184 IIDEaHERsL~~D~LL~lLk~il~~rpdLKlI----lmSATld~~~fa~~F~~ap-----v--I~V~G--r~----~P-- 244 (1283)
T TIGR01967 184 IIDEAHERSLNIDFLLGYLKQLLPRRPDLKII----ITSATIDPERFSRHFNNAP-----I--IEVSG--RT----YP-- 244 (1283)
T ss_pred EEcCcchhhccchhHHHHHHHHHhhCCCCeEE----EEeCCcCHHHHHHHhcCCC-----E--EEECC--Cc----cc--
Confidence 9999994 66655543 355555544444455 99999 445555543311 1 10000 00 00
Q ss_pred HHHHHHhhhcCCCcccceee--hhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeech
Q psy10680 286 IRKIIQMTRHAHPVVPVSLF--ISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLG 363 (537)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (537)
+. ..+........ ..+....+...+
T Consensus 245 Ve-------v~Y~~~~~~~~~~~~~~~~~i~~~I---------------------------------------------- 271 (1283)
T TIGR01967 245 VE-------VRYRPLVEEQEDDDLDQLEAILDAV---------------------------------------------- 271 (1283)
T ss_pred ce-------eEEecccccccchhhhHHHHHHHHH----------------------------------------------
Confidence 00 00000000000 000000000000
Q ss_pred hhHHHHHHhHhCceeEEEEeeccCccccccccccccc---cccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCC
Q psy10680 364 YVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSL---YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGL 440 (537)
Q Consensus 364 ~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gi 440 (537)
... ........+||+........+ +..|...+ ..+..+||+|+..+|..+++.+ +..+|||||++++.||
T Consensus 272 ---~~l-~~~~~GdILVFLpg~~EI~~l-~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSL 344 (1283)
T TIGR01967 272 ---DEL-FAEGPGDILIFLPGEREIRDA-AEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSL 344 (1283)
T ss_pred ---HHH-HhhCCCCEEEeCCCHHHHHHH-HHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhcc
Confidence 000 011223455999988888887 66666543 4577899999999999886543 3469999999999999
Q ss_pred CcCCccEEEEecCC------------------CChhhhHhhhhcccCCCCCceeEEEecCCCcc
Q psy10680 441 DVEDIKYVVNYDFP------------------DNTENYVHRIGRTARSTKTGISYTLFTPLNGN 486 (537)
Q Consensus 441 di~~~~~Vi~~d~p------------------~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~ 486 (537)
|+|++++||+++.+ -|..+|.||+|||||.+ +|.|+.++++.+..
T Consensus 345 TIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 345 TVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFN 407 (1283)
T ss_pred ccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHH
Confidence 99999999998844 25579999999999997 99999999976543
No 95
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.90 E-value=5.3e-23 Score=185.85 Aligned_cols=162 Identities=32% Similarity=0.480 Sum_probs=133.8
Q ss_pred ChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCC
Q psy10680 47 TSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKL 126 (537)
Q Consensus 47 ~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 126 (537)
|++|.++++.+.+|+++++.||||+|||++ +.++++..+....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~-----------------------------------~~~~~l~~~~~~~-- 43 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLA-----------------------------------YILPALNRLQEGK-- 43 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHH-----------------------------------HHHHHHHHHHTTS--
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHH-----------------------------------HHHHHHhhhccCC--
Confidence 689999999999999999999999999999 8888888776542
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchh-HhHHHhccCCcEEEeCCchhHHHHhcCcccccc
Q psy10680 127 EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKM-YQTRDLCRGAEIVVATPGRLIDFLESGTTNVNR 205 (537)
Q Consensus 127 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 205 (537)
..++++++|+++|+.|+.+.+..++...++++..++++.... +....+..+++|+|+||++|...+......+.+
T Consensus 44 ----~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~ 119 (169)
T PF00270_consen 44 ----DARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISR 119 (169)
T ss_dssp ----SSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTT
T ss_pred ----CceEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccCcchhhcccccccccccc
Confidence 347999999999999999999999887788999999988755 333444567999999999999999876667788
Q ss_pred eeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCch
Q psy10680 206 ITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPG 250 (537)
Q Consensus 206 l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~ 250 (537)
+++||+||+|++..+.+...+..++..+.... ..+..++|||+.
T Consensus 120 ~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~-~~~~i~~SAT~~ 163 (169)
T PF00270_consen 120 LSLIVIDEAHHLSDETFRAMLKSILRRLKRFK-NIQIILLSATLP 163 (169)
T ss_dssp ESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT-TSEEEEEESSST
T ss_pred ceeeccCcccccccccHHHHHHHHHHHhcCCC-CCcEEEEeeCCC
Confidence 99999999999999877888888877764321 122448999965
No 96
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=4e-22 Score=212.25 Aligned_cols=150 Identities=20% Similarity=0.256 Sum_probs=125.4
Q ss_pred ceeeehhhhhhcccc----cCCCCCC---ChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcc
Q psy10680 25 NVLIASDVASRGLGK----NSGYGKP---TSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSK 97 (537)
Q Consensus 25 ~~~~~~~~~~~~l~~----~~g~~~~---~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~ 97 (537)
+...+.+++.+.+.. ..||..| +|+|.++++.+..+++++..++||+|||++
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLA--------------------- 123 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLT--------------------- 123 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHH---------------------
Confidence 344455666666642 5688888 999999999999999999999999999999
Q ss_pred cccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH
Q psy10680 98 EESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD 177 (537)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
|++|++..++.. ..++||+||++|+.|.++++..+...+++++..++||.+...+...
T Consensus 124 --------------f~LP~l~~aL~g--------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 124 --------------AVMPLYLNALTG--------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred --------------HHHHHHHHHhhc--------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 888888766532 2378999999999999999999999899999999999998877655
Q ss_pred hccCCcEEEeCCchh-HHHHhcCccccc-------ceeEEEecchhhhhh
Q psy10680 178 LCRGAEIVVATPGRL-IDFLESGTTNVN-------RITYLVLDEADRMLD 219 (537)
Q Consensus 178 l~~~~~Ivv~Tp~~l-~~~l~~~~~~~~-------~l~liV~DE~h~~~~ 219 (537)
+ .++|+||||.+| .+++..+...++ .+.++|+||||.|+-
T Consensus 182 y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 182 Y--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred c--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 4 599999999999 888887655544 568999999999764
No 97
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.88 E-value=7.1e-22 Score=184.56 Aligned_cols=300 Identities=18% Similarity=0.217 Sum_probs=189.1
Q ss_pred CCChhhhhhhhccc----cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 45 KPTSIQAQSWPICL----SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~----~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
++++.|+.+-..+. +.++.|++|-||+|||.+ +.+.++..
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM------------------------------------if~~i~~a 140 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM------------------------------------IFQGIEQA 140 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh------------------------------------hHHHHHHH
Confidence 88999998765544 557999999999999986 66777777
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCc
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGT 200 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~ 200 (537)
+++ |+++.+..|....+.+.+.++++.+. +..+..+||+.+..- ..+++|+|...++.+-.
T Consensus 141 l~~-------G~~vciASPRvDVclEl~~Rlk~aF~--~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~--- 201 (441)
T COG4098 141 LNQ-------GGRVCIASPRVDVCLELYPRLKQAFS--NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ--- 201 (441)
T ss_pred Hhc-------CCeEEEecCcccchHHHHHHHHHhhc--cCCeeeEecCCchhc-------cccEEEEehHHHHHHHh---
Confidence 664 78899999999999999999998766 466788999876552 36899999988887644
Q ss_pred ccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchhH-HHHhhhCCcccccceeeeccchhhhhc
Q psy10680 201 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRL-IDFLESGTTNVNRITYLVLDEADRMLD 279 (537)
Q Consensus 201 ~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~ 279 (537)
.+|++|+||+|.+.-.. ...+....... ++......+++|||+.- ..-+.......-
T Consensus 202 ----aFD~liIDEVDAFP~~~-d~~L~~Av~~a--rk~~g~~IylTATp~k~l~r~~~~g~~~~~--------------- 259 (441)
T COG4098 202 ----AFDLLIIDEVDAFPFSD-DQSLQYAVKKA--RKKEGATIYLTATPTKKLERKILKGNLRIL--------------- 259 (441)
T ss_pred ----hccEEEEeccccccccC-CHHHHHHHHHh--hcccCceEEEecCChHHHHHHhhhCCeeEe---------------
Confidence 48999999999864321 12232222222 33344455999996543 222222111000
Q ss_pred CCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccce
Q psy10680 280 MGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTC 359 (537)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (537)
.+..........+|.........+.+..- ...+.
T Consensus 260 --------klp~RfH~~pLpvPkf~w~~~~~k~l~r~-------------------------kl~~k------------- 293 (441)
T COG4098 260 --------KLPARFHGKPLPVPKFVWIGNWNKKLQRN-------------------------KLPLK------------- 293 (441)
T ss_pred --------ecchhhcCCCCCCCceEEeccHHHHhhhc-------------------------cCCHH-------------
Confidence 00111111111222111111111111100 00000
Q ss_pred eechhhHHHH-HHhHhCceeEEEEeeccCcccccccccc-cccc-ccccccCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q psy10680 360 VFLGYVLYFW-FILVAGIERWVFMEINHNGTETKHYGVS-SSLY-RAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVA 436 (537)
Q Consensus 360 ~~~~~~~~~~-~~~~~~~~~~if~~~~~~~~~l~~~~l~-~~~~-~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l 436 (537)
+...+ .....+...+||+......+.. +..+. .... ....+|+. ...|.+..+.||+|+..+||+|.++
T Consensus 294 -----l~~~lekq~~~~~P~liF~p~I~~~eq~-a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTIL 365 (441)
T COG4098 294 -----LKRWLEKQRKTGRPVLIFFPEIETMEQV-AAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTIL 365 (441)
T ss_pred -----HHHHHHHHHhcCCcEEEEecchHHHHHH-HHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehh
Confidence 00011 1111234455899888888877 55552 2222 22344543 3468888999999999999999999
Q ss_pred ccCCCcCCccEEEEecCC--CChhhhHhhhhcccCCCCCce
Q psy10680 437 SRGLDVEDIKYVVNYDFP--DNTENYVHRIGRTARSTKTGI 475 (537)
Q Consensus 437 ~~Gidi~~~~~Vi~~d~p--~s~~~~~Q~~GRagR~~~~g~ 475 (537)
+||+.+|++++++.-.-- -+....+|.+||+||.-....
T Consensus 366 ERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~Pt 406 (441)
T COG4098 366 ERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPT 406 (441)
T ss_pred hcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCC
Confidence 999999999998764433 467889999999999655433
No 98
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.6e-21 Score=207.94 Aligned_cols=377 Identities=16% Similarity=0.142 Sum_probs=220.3
Q ss_pred cccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhh
Q psy10680 36 GLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILP 115 (537)
Q Consensus 36 ~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (537)
+..+..|+ .|++.|.-.--.+..| -|..++||+|||++ +.+|
T Consensus 73 a~~R~lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLv-----------------------------------a~lp 114 (830)
T PRK12904 73 ASKRVLGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLV-----------------------------------ATLP 114 (830)
T ss_pred HHHHHhCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHH-----------------------------------HHHH
Confidence 33345676 8999999888777665 59999999999999 7888
Q ss_pred HhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchh-HH
Q psy10680 116 ALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRL-ID 194 (537)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~ 194 (537)
++-..+. |..+-|++||..|+.|.++++..++..+|+++..+.|+.+..++.... .++|+++||..| .+
T Consensus 115 a~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfD 184 (830)
T PRK12904 115 AYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFD 184 (830)
T ss_pred HHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhh
Confidence 8533332 333779999999999999999999999999999999998877665543 589999999999 77
Q ss_pred HHhcCcc------cccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-c--hhHHHHhhhCCccccc
Q psy10680 195 FLESGTT------NVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-P--GRLIDFLESGTTNVNR 265 (537)
Q Consensus 195 ~l~~~~~------~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p--~~~~~~l~~~~~~~~~ 265 (537)
.|..... ....+.++|+||+|.++-.. .+ .+.++|.. + ..+...+......+..
T Consensus 185 yLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDe-----------Ar------tpLiiSg~~~~~~~~y~~~~~~v~~l~~ 247 (830)
T PRK12904 185 YLRDNMVFSLEERVQRGLNYAIVDEVDSILIDE-----------AR------TPLIISGPAEDSSELYKRANKIVPTLEK 247 (830)
T ss_pred hhhcccccchhhhcccccceEEEechhhheecc-----------CC------CceeeECCCCcccHHHHHHHHHHHhcCC
Confidence 7765542 36789999999999976321 00 01122222 1 1111111110000100
Q ss_pred ceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeee-------cc-----
Q psy10680 266 ITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLV-------LD----- 333 (537)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----- 333 (537)
-.....++..... .+.+.-................. .......+...+...........|.+ .+
T Consensus 248 ~~dy~vde~~~~v--~lte~G~~~~e~~~~~~~ly~~~--~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR 323 (830)
T PRK12904 248 EGDYTVDEKSRTV--GLTEEGIEKAEKLLGIENLYDPE--NIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGR 323 (830)
T ss_pred CCCeEEEcCCCee--eECHHHHHHHHHHhCCccccChh--hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCc
Confidence 0001111111100 00000000001000000000000 00000111111100000000001110 00
Q ss_pred ---------hhhhhhc-------------------------------CCC-----hhHHHHHhhhcc-------------
Q psy10680 334 ---------EADRMLD-------------------------------MGF-----EPQIRKIIQMTR------------- 355 (537)
Q Consensus 334 ---------~~~~~~~-------------------------------~~~-----~~~~~~~~~~~~------------- 355 (537)
..+..++ +.. ......++....
T Consensus 324 ~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d 403 (830)
T PRK12904 324 LMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRID 403 (830)
T ss_pred cCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeee
Confidence 0000000 000 000001111000
Q ss_pred ccceee------chhhHHHH-HHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCc
Q psy10680 356 FNTCVF------LGYVLYFW-FILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYIN 428 (537)
Q Consensus 356 ~~~~~~------~~~~~~~~-~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 428 (537)
.....+ ...+.... .....+...+|||.+...++.+ +..|...|++...+|+. ..+|...+..|+.+...
T Consensus 404 ~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~L-s~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~ 480 (830)
T PRK12904 404 HPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELL-SKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA 480 (830)
T ss_pred CCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHH-HHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce
Confidence 001111 11111111 1224566889999999999999 99999999999999995 67889999999999999
Q ss_pred EEEEecccccCCCcCCc--------------------------------------cEEEEecCCCChhhhHhhhhcccCC
Q psy10680 429 VLIASDVASRGLDVEDI--------------------------------------KYVVNYDFPDNTENYVHRIGRTARS 470 (537)
Q Consensus 429 iLvaT~~l~~Gidi~~~--------------------------------------~~Vi~~d~p~s~~~~~Q~~GRagR~ 470 (537)
|+|||++++||+||+-= -+||-...+.|..-=.|..||+||-
T Consensus 481 VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQ 560 (830)
T PRK12904 481 VTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQ 560 (830)
T ss_pred EEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccC
Confidence 99999999999999532 2577777889999999999999999
Q ss_pred CCCceeEEEecCCC
Q psy10680 471 TKTGISYTLFTPLN 484 (537)
Q Consensus 471 ~~~g~~~~l~~~~~ 484 (537)
|.+|.+-.|++-.|
T Consensus 561 GdpGss~f~lSleD 574 (830)
T PRK12904 561 GDPGSSRFYLSLED 574 (830)
T ss_pred CCCCceeEEEEcCc
Confidence 99999998888765
No 99
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.87 E-value=6.1e-21 Score=209.82 Aligned_cols=374 Identities=16% Similarity=0.144 Sum_probs=207.2
Q ss_pred CCChhhhhhhhccc----cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 45 KPTSIQAQSWPICL----SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~----~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
.+++||.+.+..+. .|.+.|++..+|.|||+. .+.++..+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQ------------------------------------aIalL~~L 212 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQ------------------------------------TISLLGYL 212 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHH------------------------------------HHHHHHHH
Confidence 68999999998765 567899999999999986 34444444
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH---hccCCcEEEeCCchhHHHHh
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD---LCRGAEIVVATPGRLIDFLE 197 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~Ivv~Tp~~l~~~l~ 197 (537)
.... +..+.+|||||. ++..+|.+++..+.+ .+++..++|.......... .....+|+|+|++.+.....
T Consensus 213 ~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~ 285 (1033)
T PLN03142 213 HEYR----GITGPHMVVAPK-STLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT 285 (1033)
T ss_pred HHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH
Confidence 3221 112347999997 667889999998875 4566777775443222111 12467999999988765322
Q ss_pred cCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchh-----HHHHhhhCCcccccceeeecc
Q psy10680 198 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGR-----LIDFLESGTTNVNRITYLVLD 272 (537)
Q Consensus 198 ~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~-----~~~~l~~~~~~~~~~~~~~~~ 272 (537)
.+.-...++||+||||++.+. ...+...+..+...... ++|+||-. +...+.-. ....+.. ..
T Consensus 286 --~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~a~~RL----LLTGTPlqNnl~ELwsLL~FL--~P~~f~s--~~ 353 (1033)
T PLN03142 286 --ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFSTNYRL----LITGTPLQNNLHELWALLNFL--LPEIFSS--AE 353 (1033)
T ss_pred --HhccCCCCEEEEcCccccCCH--HHHHHHHHHHhhcCcEE----EEecCCCCCCHHHHHHHHhcC--CCCcCCC--HH
Confidence 122235789999999998653 34455555555544444 89999632 22222211 0000000 00
Q ss_pred chhhhhcCC---C-h---HHHHHH---------HHhhhcCCCccc---ceeehhhhHHHH-HHHHhhcccccccee--ee
Q psy10680 273 EADRMLDMG---F-E---PQIRKI---------IQMTRHAHPVVP---VSLFISERRDTI-LHFLESGTTNVNRIT--YL 330 (537)
Q Consensus 273 ~~~~~~~~~---~-~---~~~~~~---------~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~ 330 (537)
.-...+... . . ..+..+ ........+... +..........+ ..++.......+... ..
T Consensus 354 ~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~ 433 (1033)
T PLN03142 354 TFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKR 433 (1033)
T ss_pred HHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 000000000 0 0 000000 000000000000 000001111110 001100000000000 00
Q ss_pred ecchhhhhhcCCChhH-------------HHHHhhhccccceeechhhHHHH-HHhHhCceeEEEEeeccCccccccccc
Q psy10680 331 VLDEADRMLDMGFEPQ-------------IRKIIQMTRFNTCVFLGYVLYFW-FILVAGIERWVFMEINHNGTETKHYGV 396 (537)
Q Consensus 331 ~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~if~~~~~~~~~l~~~~l 396 (537)
+......+-.+...+. ...++ ..+.....+...+ .....+.+.+||+........+ ...+
T Consensus 434 LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~li-----e~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiL-ed~L 507 (1033)
T PLN03142 434 LLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV-----ENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDIL-EDYL 507 (1033)
T ss_pred HHHHHHHHHHHhCCHHhhhcccccCcccchhHHh-----hhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHH-HHHH
Confidence 0000000000000000 00000 0011111111111 1234667888998877777766 7777
Q ss_pred cccccccccccCCCCHHHHHHHHHHHhcC---CCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCC
Q psy10680 397 SSSLYRAMGIHGDKSQWNRDQTLRDFRSG---YINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT 473 (537)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~ 473 (537)
...++..+.++|+++..+|..+++.|+.. ...+|++|.+.+.|||+..+++||+||+++++....|++||+.|.|+.
T Consensus 508 ~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQk 587 (1033)
T PLN03142 508 MYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQK 587 (1033)
T ss_pred HHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCC
Confidence 78899999999999999999999999753 346789999999999999999999999999999999999999999998
Q ss_pred ceeEEE
Q psy10680 474 GISYTL 479 (537)
Q Consensus 474 g~~~~l 479 (537)
..+.++
T Consensus 588 k~V~Vy 593 (1033)
T PLN03142 588 KEVQVF 593 (1033)
T ss_pred ceEEEE
Confidence 665443
No 100
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=3.1e-21 Score=204.98 Aligned_cols=394 Identities=15% Similarity=0.158 Sum_probs=223.6
Q ss_pred hcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchh
Q psy10680 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYIL 114 (537)
Q Consensus 35 ~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (537)
.+..+..|+ .|++.|.-.--.+..|+ |..+.||+|||++ ..+
T Consensus 71 Ea~~R~~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLv-----------------------------------A~l 112 (796)
T PRK12906 71 EGAKRVLGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLT-----------------------------------ATL 112 (796)
T ss_pred HHHHHHhCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHH-----------------------------------HHH
Confidence 344445676 89999998887776664 9999999999999 777
Q ss_pred hHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHH
Q psy10680 115 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLID 194 (537)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~ 194 (537)
|++...+. |..+-+++||.-|+.|-++++..+...+|+++..+.++.+..+... ...++|+.+|...|--
T Consensus 113 ~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~--~y~~dI~Y~t~~e~gf 182 (796)
T PRK12906 113 PVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRA--AYNCDITYSTNSELGF 182 (796)
T ss_pred HHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHH--HhcCCCeecCCccccc
Confidence 77766654 5568999999999999999999999999999999988876665433 3478999999988752
Q ss_pred -HHhcC------cccccceeEEEecchhhhhhCC----------------ChHHHHHHHhhccccc--------------
Q psy10680 195 -FLESG------TTNVNRITYLVLDEADRMLDMG----------------FEPQIRKIIQMTRTRD-------------- 237 (537)
Q Consensus 195 -~l~~~------~~~~~~l~liV~DE~h~~~~~~----------------~~~~l~~il~~~~~~~-------------- 237 (537)
.|... ......+.+.|+||+|.++-.. ....+..+...+....
T Consensus 183 DyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~ 262 (796)
T PRK12906 183 DYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYK 262 (796)
T ss_pred cchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceE
Confidence 33322 1124568899999999854221 1111222222211100
Q ss_pred cccCCceeecCch---hHHHHh-----------------hh----CCcccccceeeeccc--------hhhh-hcCCChH
Q psy10680 238 LCRGAEIVVATPG---RLIDFL-----------------ES----GTTNVNRITYLVLDE--------ADRM-LDMGFEP 284 (537)
Q Consensus 238 ~~~~~~~~saTp~---~~~~~l-----------------~~----~~~~~~~~~~~~~~~--------~~~~-~~~~~~~ 284 (537)
.......+.-|+. ....++ .+ .........+++.+. ..++ .+..++.
T Consensus 263 id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~ 342 (796)
T PRK12906 263 IDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSD 342 (796)
T ss_pred EEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccCh
Confidence 0000001111211 111111 00 000000011111110 0000 0111222
Q ss_pred HHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhh---ccccccceeeeecchhhhhhcCCC--hhHHHHHhhhccccce
Q psy10680 285 QIRKIIQMTRHAHPVVPVSLFISERRDTILHFLES---GTTNVNRITYLVLDEADRMLDMGF--EPQIRKIIQMTRFNTC 359 (537)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 359 (537)
-+-+.+...............-.-...++...... .++.... ...+....+.... -|..+... .......
T Consensus 343 GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~----e~~Ef~~iY~l~vv~IPtnkp~~-r~d~~d~ 417 (796)
T PRK12906 343 GLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKT----EEEEFREIYNMEVITIPTNRPVI-RKDSPDL 417 (796)
T ss_pred HHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHH----HHHHHHHHhCCCEEEcCCCCCee-eeeCCCe
Confidence 22222222111110000000000000011110000 0000000 0000000000000 00000000 0000011
Q ss_pred e------echhhHHHH-HHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy10680 360 V------FLGYVLYFW-FILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIA 432 (537)
Q Consensus 360 ~------~~~~~~~~~-~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLva 432 (537)
. ....+.... .....+...+|||.+...++.+ +..|...+++...+|+.+...++..+.+.+++|. |+||
T Consensus 418 i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~l-s~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIA 494 (796)
T PRK12906 418 LYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERL-SHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIA 494 (796)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHH-HHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEE
Confidence 1 111111111 1234667888999999999999 9999999999999999999888888877777777 9999
Q ss_pred ecccccCCCcC---Ccc-----EEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 433 SDVASRGLDVE---DIK-----YVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 433 T~~l~~Gidi~---~~~-----~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
|++++||.||+ ++. +||+++.|.|...|.|+.||+||.|.+|.+..+++..|
T Consensus 495 TnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 495 TNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred eccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 99999999994 888 99999999999999999999999999999999988875
No 101
>KOG0950|consensus
Probab=99.87 E-value=7.7e-22 Score=206.53 Aligned_cols=351 Identities=19% Similarity=0.187 Sum_probs=229.2
Q ss_pred hhhcccccCCCCCCChhhhhhh--hccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccc
Q psy10680 33 ASRGLGKNSGYGKPTSIQAQSW--PICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDV 110 (537)
Q Consensus 33 ~~~~l~~~~g~~~~~~~Q~~ai--~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (537)
+.....+..|+...+..|.+++ +.++.++|.|..+||+.|||++
T Consensus 211 ~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlv---------------------------------- 256 (1008)
T KOG0950|consen 211 VSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLV---------------------------------- 256 (1008)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHH----------------------------------
Confidence 3444446788999999999998 7788889999999999999999
Q ss_pred cchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCc
Q psy10680 111 KYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPG 190 (537)
Q Consensus 111 ~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~ 190 (537)
.-+-++..++.. +..++.+.|..+.+.+-...+..+...+|+++-..+|..+.... .+.-.+.|+|.|
T Consensus 257 -aeilml~~~l~~-------rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiE 324 (1008)
T KOG0950|consen 257 -AEILMLREVLCR-------RRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIE 324 (1008)
T ss_pred -HHHHHHHHHHHH-------hhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehH
Confidence 566666666543 34589999999999999999999999999999888877665433 235679999999
Q ss_pred hhHHHHhc--CcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccc--cCCceeecC---chhHHHHhhhCCccc
Q psy10680 191 RLIDFLES--GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLC--RGAEIVVAT---PGRLIDFLESGTTNV 263 (537)
Q Consensus 191 ~l~~~l~~--~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~--~~~~~~saT---p~~~~~~l~~~~~~~ 263 (537)
+-..+.+. ..-.+..+++||+||.|.+.+.+.+..++.++..+...-.. -++..+||| .+.+.+++++ ..+.
T Consensus 325 kanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A-~~y~ 403 (1008)
T KOG0950|consen 325 KANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDA-FVYT 403 (1008)
T ss_pred hhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhh-hhee
Confidence 86655432 12356678999999999999999999999988766552222 235588999 4556677765 3333
Q ss_pred ccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHh--h---ccccccceeeeecchhhhh
Q psy10680 264 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLE--S---GTTNVNRITYLVLDEADRM 338 (537)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~ 338 (537)
.+.....+.+--.. |. ... ...+...+..+-. . +..+...+..
T Consensus 404 t~fRPv~L~E~ik~---G~----------------~i~----~~~r~~~lr~ia~l~~~~~g~~dpD~~v~--------- 451 (1008)
T KOG0950|consen 404 TRFRPVPLKEYIKP---GS----------------LIY----ESSRNKVLREIANLYSSNLGDEDPDHLVG--------- 451 (1008)
T ss_pred cccCcccchhccCC---Cc----------------ccc----cchhhHHHHHhhhhhhhhcccCCCcceee---------
Confidence 32322222211000 00 000 0000000000000 0 0000000000
Q ss_pred hcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccc--------------------------
Q psy10680 339 LDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETK-------------------------- 392 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~-------------------------- 392 (537)
........+...++||.++.+++.+.
T Consensus 452 ----------------------------L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s 503 (1008)
T KOG0950|consen 452 ----------------------------LCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSIS 503 (1008)
T ss_pred ----------------------------ehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHH
Confidence 00011112222333333333332210
Q ss_pred ----------ccccc-ccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEec----CCCCh
Q psy10680 393 ----------HYGVS-SSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYD----FPDNT 457 (537)
Q Consensus 393 ----------~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d----~p~s~ 457 (537)
...+. .....+..+|+|++..+|..+...|+.|...|++||+++..|+|+|+.++++..- .+.+-
T Consensus 504 ~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~ 583 (1008)
T KOG0950|consen 504 NLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTR 583 (1008)
T ss_pred hHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhh
Confidence 11111 1223445579999999999999999999999999999999999999999888543 34678
Q ss_pred hhhHhhhhcccCCCC--CceeEEEecCCCcchHHH
Q psy10680 458 ENYVHRIGRTARSTK--TGISYTLFTPLNGNKAQD 490 (537)
Q Consensus 458 ~~~~Q~~GRagR~~~--~g~~~~l~~~~~~~~~~~ 490 (537)
.+|.||+|||||+|. .|.+++++.+.+.....+
T Consensus 584 ~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 584 LEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRE 618 (1008)
T ss_pred hhHHhhhhhhhhcccccCcceEEEeeccchhHHHH
Confidence 899999999999986 488899999988765543
No 102
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.5e-21 Score=206.38 Aligned_cols=365 Identities=20% Similarity=0.195 Sum_probs=232.4
Q ss_pred CCCChhhhhhhhccccC----CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHh
Q psy10680 44 GKPTSIQAQSWPICLSG----RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYH 119 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~~----~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 119 (537)
..+++.|..|...+.+. ...++.|.||||||.+ |+ .++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEv-----------------------------------Yl-~~i~~ 240 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEV-----------------------------------YL-EAIAK 240 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHH-----------------------------------HH-HHHHH
Confidence 36788999999888765 5899999999999998 43 34444
Q ss_pred hhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHH
Q psy10680 120 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDF 195 (537)
Q Consensus 120 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~ 195 (537)
.+.. |..+|+|||..+|..|+..+++..+ +.++..++.+.++.+..+.+ ..+..|||||...++
T Consensus 241 ~L~~-------GkqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-- 308 (730)
T COG1198 241 VLAQ-------GKQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-- 308 (730)
T ss_pred HHHc-------CCEEEEEeccccchHHHHHHHHHHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc--
Confidence 4443 6779999999999999999999555 57888888888766554443 357899999997766
Q ss_pred HhcCcccccceeEEEecchhhhhhCC------ChHHHHHHHhhccccccccCCceeecCchhHHHH-hhhCCccccccee
Q psy10680 196 LESGTTNVNRITYLVLDEADRMLDMG------FEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDF-LESGTTNVNRITY 268 (537)
Q Consensus 196 l~~~~~~~~~l~liV~DE~h~~~~~~------~~~~l~~il~~~~~~~~~~~~~~~saTp~~~~~~-l~~~~~~~~~~~~ 268 (537)
.++.++.+||+||-|.-..+. ....+.-..........+ +-||||.--.-+ ..+..-....+..
T Consensus 309 -----~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvv----LgSATPSLES~~~~~~g~y~~~~L~~ 379 (730)
T COG1198 309 -----LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVV----LGSATPSLESYANAESGKYKLLRLTN 379 (730)
T ss_pred -----CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEE----EecCCCCHHHHHhhhcCceEEEEccc
Confidence 478999999999999865443 222333333333333444 778997432111 1111000000000
Q ss_pred ----------eeccchhhhhcCC--ChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhcc---ccccc---eeee
Q psy10680 269 ----------LVLDEADRMLDMG--FEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGT---TNVNR---ITYL 330 (537)
Q Consensus 269 ----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~ 330 (537)
..+|...+....+ +++.+...+. ..++... -..++ ...+
T Consensus 380 R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~-----------------------~~l~~geQ~llflnRRGys~~l 436 (730)
T COG1198 380 RAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIR-----------------------KTLERGEQVLLFLNRRGYAPLL 436 (730)
T ss_pred cccccCCCcceEEeccccccccCccCCHHHHHHHH-----------------------HHHhcCCeEEEEEccCCcccee
Confidence 0111111111111 3333322222 2222211 11111 2355
Q ss_pred ecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCcee-EEEEeec--cCcccccccccccccccccccc
Q psy10680 331 VLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIER-WVFMEIN--HNGTETKHYGVSSSLYRAMGIH 407 (537)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~if~~~~--~~~~~l~~~~l~~~~~~~~~~~ 407 (537)
.|..+.....+..+...-.+....+.-.|..|++.-.....++.+... ++++... +..+++ ...+.. .++..+.
T Consensus 437 ~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL-~~~FP~--~rv~r~d 513 (730)
T COG1198 437 LCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEEL-KRLFPG--ARIIRID 513 (730)
T ss_pred ecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHH-HHHCCC--CcEEEEc
Confidence 677777777777777777777777777888888875555555555433 4554322 222222 333333 4455555
Q ss_pred CCCCHH--HHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCC------------ChhhhHhhhhcccCCCCC
Q psy10680 408 GDKSQW--NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD------------NTENYVHRIGRTARSTKT 473 (537)
Q Consensus 408 ~~~~~~--~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~------------s~~~~~Q~~GRagR~~~~ 473 (537)
++.... .-...++.|..|+.+|||+|.++..|.|+|++++|...|.+. ....+.|-.|||||.+.+
T Consensus 514 ~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~ 593 (730)
T COG1198 514 SDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKP 593 (730)
T ss_pred cccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCC
Confidence 555543 245778999999999999999999999999999998666431 344568999999999999
Q ss_pred ceeEEEecCCCcchHHHH
Q psy10680 474 GISYTLFTPLNGNKAQDL 491 (537)
Q Consensus 474 g~~~~l~~~~~~~~~~~~ 491 (537)
|.+++-.-..+...++.+
T Consensus 594 G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 594 GEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred CeEEEEeCCCCcHHHHHH
Confidence 999988887775544443
No 103
>KOG0949|consensus
Probab=99.85 E-value=3.1e-20 Score=193.56 Aligned_cols=165 Identities=20% Similarity=0.286 Sum_probs=122.5
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.|...|++.+..+-++++++|+|||.+|||++ ...+.+..+...
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi------------------------------------sfY~iEKVLRes 554 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI------------------------------------SFYAIEKVLRES 554 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec------------------------------------cHHHHHHHHhhc
Confidence 78899999999999999999999999999986 344555555443
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhc-ccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhc---Cc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFS-RTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLES---GT 200 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~---~~ 200 (537)
+...+|+++||++|++|....+...+ ...-.+...+.|....+.+.. .-.|+|+|+.|+++..+|.. ..
T Consensus 555 -----D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q 627 (1330)
T KOG0949|consen 555 -----DSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQ 627 (1330)
T ss_pred -----CCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhh
Confidence 36779999999999999988877654 222334455666655554432 23699999999999998866 44
Q ss_pred ccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC---chhHHHHhh
Q psy10680 201 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT---PGRLIDFLE 257 (537)
Q Consensus 201 ~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT---p~~~~~~l~ 257 (537)
...+++++||+||+|.+....-+-.+..++...+. +.+ .+||| |.....|++
T Consensus 628 ~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~C-P~L----~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 628 KFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPC-PFL----VLSATIGNPNLFQKWLN 682 (1330)
T ss_pred hhhhcceEEEechhhhccccccchHHHHHHHhcCC-Cee----EEecccCCHHHHHHHHH
Confidence 56789999999999999876555555555555443 233 78888 556666776
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.4e-20 Score=200.42 Aligned_cols=110 Identities=15% Similarity=0.040 Sum_probs=97.3
Q ss_pred hHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCc------
Q psy10680 372 LVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDI------ 445 (537)
Q Consensus 372 ~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~------ 445 (537)
...+...+|||.+...++.+ +..|...+++...+|+.+...++..+.+.|+.|. |+|||++++||.|+.=-
T Consensus 446 ~~~GrpVLV~t~sv~~se~l-s~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~ 522 (908)
T PRK13107 446 RERGQPVLVGTVSIEQSELL-ARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNME 522 (908)
T ss_pred HHcCCCEEEEeCcHHHHHHH-HHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHh
Confidence 35667888999999999988 8999999999999999999999999999999998 99999999999998511
Q ss_pred -------------------------------cEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 446 -------------------------------KYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 446 -------------------------------~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
-+||-...+.|..-=.|..||+||-|.+|.+..|++-.|
T Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 523 IEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred hhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 257777788888888999999999999999998888765
No 105
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.80 E-value=2e-19 Score=186.78 Aligned_cols=330 Identities=18% Similarity=0.155 Sum_probs=187.6
Q ss_pred CCCChhhhhhhhccc----cC-CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 44 GKPTSIQAQSWPICL----SG-RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~----~~-~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
..|+.+|..||..+. +| +.+++++.||+|||.+ .++++.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT------------------------------------Aiaii~ 207 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT------------------------------------AIAIID 207 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee------------------------------------HHHHHH
Confidence 478999999996554 45 3699999999999997 677888
Q ss_pred hhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhc
Q psy10680 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLES 198 (537)
Q Consensus 119 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 198 (537)
.+++.+. -.++|||+-+++|+.|....+..+.+..... ..+.+... ...++|.++|.+++......
T Consensus 208 rL~r~~~-----~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~-n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~ 273 (875)
T COG4096 208 RLIKSGW-----VKRVLFLADRNALVDQAYGAFEDFLPFGTKM-NKIEDKKG--------DTSSEIYLSTYQTMTGRIEQ 273 (875)
T ss_pred HHHhcch-----hheeeEEechHHHHHHHHHHHHHhCCCccce-eeeecccC--------CcceeEEEeehHHHHhhhhc
Confidence 8876654 4569999999999999999999887653321 11111111 12578999999999988765
Q ss_pred C-----cccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchhHHHHhhhCCcccccceeeeccc
Q psy10680 199 G-----TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDE 273 (537)
Q Consensus 199 ~-----~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~ 273 (537)
. .+....+++||+||||+-. ......+++++..... +++|||....+.-.-..+...+....
T Consensus 274 ~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~I~dYFdA~~~-----gLTATP~~~~d~~T~~~F~g~Pt~~Y---- 340 (875)
T COG4096 274 KEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSSILDYFDAATQ-----GLTATPKETIDRSTYGFFNGEPTYAY---- 340 (875)
T ss_pred cccccccCCCCceeEEEechhhhhH----HhhhHHHHHHHHHHHH-----hhccCcccccccccccccCCCcceee----
Confidence 4 3456679999999999954 3445577777665433 45888765322111001100111111
Q ss_pred hhhhhcCCChHHHHHHHHhhhcC-CCccccee------eh----hhhHHHHHHHHhhccccccceeeeecchhhhhhcCC
Q psy10680 274 ADRMLDMGFEPQIRKIIQMTRHA-HPVVPVSL------FI----SERRDTILHFLESGTTNVNRITYLVLDEADRMLDMG 342 (537)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (537)
++...+..-... +....... .- .+..+..-..+.......+..
T Consensus 341 -----------sleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~--------------- 394 (875)
T COG4096 341 -----------SLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEAR--------------- 394 (875)
T ss_pred -----------cHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccccccccc---------------
Confidence 111111110000 00000000 00 000000000000000000000
Q ss_pred ChhHHHHHhhhccccceeechhhHHHHHHh----HhCceeEEEEeeccCccccccccccc-----cccccccccCCCCHH
Q psy10680 343 FEPQIRKIIQMTRFNTCVFLGYVLYFWFIL----VAGIERWVFMEINHNGTETKHYGVSS-----SLYRAMGIHGDKSQW 413 (537)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~if~~~~~~~~~l~~~~l~~-----~~~~~~~~~~~~~~~ 413 (537)
.....++...+..+ ....+..+... ....+.+|||.+..+++.+ ...+.. .+--+..+.|.-...
T Consensus 395 --d~dr~~v~~~~~~~---V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i-~~~~~~~ype~~~~~a~~IT~d~~~~ 468 (875)
T COG4096 395 --DFDRTLVIPFRTET---VARELTEYLKRGATGDEIGKTIVFAKNHDHAERI-REALVNEYPEYNGRYAMKITGDAEQA 468 (875)
T ss_pred --ccchhccccchHHH---HHHHHHHHhccccCCCccCceEEEeeCcHHHHHH-HHHHHHhCccccCceEEEEeccchhh
Confidence 00000000000000 01111111111 1135788999999999887 333322 223344555554443
Q ss_pred HHHHHHHHHh--cCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCC
Q psy10680 414 NRDQTLRDFR--SGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARS 470 (537)
Q Consensus 414 ~r~~~~~~f~--~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~ 470 (537)
+ . .++.|. +.-.+|.|+.+++..|||+|.|.++|++..-.|...|.||+||+.|.
T Consensus 469 q-~-~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 469 Q-A-LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred H-H-HHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 2 2 344443 45578999999999999999999999999999999999999999984
No 106
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.79 E-value=1.1e-18 Score=172.27 Aligned_cols=143 Identities=18% Similarity=0.223 Sum_probs=118.4
Q ss_pred hhhHHHHHH-hHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCC
Q psy10680 363 GYVLYFWFI-LVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLD 441 (537)
Q Consensus 363 ~~~~~~~~~-~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gid 441 (537)
..++..+.. ...+.+.+|-+-+++.++.+ ..++.+.|+++.-+|++...-+|.++++++|.|.++|||+-+.+-+|+|
T Consensus 433 dDL~~EI~~r~~~~eRvLVTtLTKkmAEdL-T~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLD 511 (663)
T COG0556 433 DDLLSEIRKRVAKNERVLVTTLTKKMAEDL-TEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (663)
T ss_pred HHHHHHHHHHHhcCCeEEEEeehHHHHHHH-HHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCC
Confidence 333333333 23445666777778888888 9999999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEecC-----CCChhhhHhhhhcccCCCCCceeEEEecC---------CCcchHHHHHHHHHHccccccHHHH
Q psy10680 442 VEDIKYVVNYDF-----PDNTENYVHRIGRTARSTKTGISYTLFTP---------LNGNKAQDLIDILNEAHQFVPDRLL 507 (537)
Q Consensus 442 i~~~~~Vi~~d~-----p~s~~~~~Q~~GRagR~~~~g~~~~l~~~---------~~~~~~~~~~~~l~~~~~~~~~~l~ 507 (537)
+|.|++|.++|. .+|..+.+|-+|||+|. -.|.++++.+. .+...-+++.-.+++.+.-.|..+.
T Consensus 512 iPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~ 590 (663)
T COG0556 512 LPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIK 590 (663)
T ss_pred CcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhh
Confidence 999999999884 47999999999999994 78999988886 3445566777777877777787765
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.78 E-value=1.6e-18 Score=189.41 Aligned_cols=337 Identities=15% Similarity=0.120 Sum_probs=197.7
Q ss_pred CCChhhhhhhhccccC---C-cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 45 KPTSIQAQSWPICLSG---R-DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~---~-~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
.+.+.|.+++..+... . .+++.||||+|||.+ .+.++...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~a-----------------------------------sl~~a~~~~ 239 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEA-----------------------------------SLILALALL 239 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHH-----------------------------------HHHHHHHHh
Confidence 4488999999877754 3 788999999999998 666666555
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH-----h---------ccCCcEEE
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD-----L---------CRGAEIVV 186 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l---------~~~~~Ivv 186 (537)
... ....++++++.|++.++++++++++......++.....++.......... . ..-..+.+
T Consensus 240 ~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~ 315 (733)
T COG1203 240 DEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIV 315 (733)
T ss_pred hcc----ccccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccc
Confidence 442 11367899999999999999999997665544332212333221111000 0 01133445
Q ss_pred eCCchhHHHH-hcCccc-c--cceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHHHhhhCCc
Q psy10680 187 ATPGRLIDFL-ESGTTN-V--NRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESGTT 261 (537)
Q Consensus 187 ~Tp~~l~~~l-~~~~~~-~--~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~~~~~ 261 (537)
+||....... ...... + -..+++||||+|.+.+......+..++..+.. ....+.++||| |.-+...+.....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~--~g~~ill~SATlP~~~~~~l~~~~~ 393 (733)
T COG1203 316 VTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAE--AGVPVLLMSATLPPFLKEKLKKALG 393 (733)
T ss_pred cCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHh--CCCCEEEEecCCCHHHHHHHHHHHh
Confidence 5554444421 111111 1 22468999999998876433444444444332 12333489999 7666655555322
Q ss_pred ccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcC
Q psy10680 262 NVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDM 341 (537)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (537)
.......... .+...-........ ........
T Consensus 394 ~~~~~~~~~~-~~~~~~e~~~~~~~-----------------------~~~~~~~~------------------------ 425 (733)
T COG1203 394 KGREVVENAK-FCPKEDEPGLKRKE-----------------------RVDVEDGP------------------------ 425 (733)
T ss_pred cccceecccc-cccccccccccccc-----------------------chhhhhhh------------------------
Confidence 2211111000 00000000000000 00000000
Q ss_pred CChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHH
Q psy10680 342 GFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRD 421 (537)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 421 (537)
. .............+.+..|.|++...+.++ -..+...+.+++.+||.+...+|.+.++.
T Consensus 426 ----~---------------~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~-Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~ 485 (733)
T COG1203 426 ----Q---------------EELIELISEEVKEGKKVLVIVNTVDRAIEL-YEKLKEKGPKVLLLHSRFTLKDREEKERE 485 (733)
T ss_pred ----h---------------HhhhhcchhhhccCCcEEEEEecHHHHHHH-HHHHHhcCCCEEEEecccchhhHHHHHHH
Confidence 0 000000111223345555999999999998 44555544489999999999999888876
Q ss_pred Hh----cCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCC--CCceeEEEecCCCcchHHHHHH
Q psy10680 422 FR----SGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARST--KTGISYTLFTPLNGNKAQDLID 493 (537)
Q Consensus 422 f~----~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~--~~g~~~~l~~~~~~~~~~~~~~ 493 (537)
++ .+...|+|||++++.|+|+ +.+.+|.==.| ..+.+||+||++|.| ..|..+++.............+
T Consensus 486 l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~ 560 (733)
T COG1203 486 LKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYE 560 (733)
T ss_pred HHHHHhccCCeEEEEeeEEEEEecc-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhh
Confidence 54 4788999999999999999 68888764444 899999999999999 5677777777655444443333
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.78 E-value=4.5e-18 Score=181.89 Aligned_cols=132 Identities=19% Similarity=0.300 Sum_probs=111.8
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEec
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYD 452 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d 452 (537)
..+...+|||.+...++.+ ...|...|+++..+||+++..+|..+++.|+.|++.|+|||+.+.+|+|+|++++||++|
T Consensus 440 ~~g~~vLIf~~tk~~ae~L-~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~D 518 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDL-TDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILD 518 (655)
T ss_pred cCCCEEEEEECCHHHHHHH-HHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeC
Confidence 3566788999999999999 888889999999999999999999999999999999999999999999999999999988
Q ss_pred -----CCCChhhhHhhhhcccCCCCCceeEEEecCCCcc---------hHHHHHHHHHHccccccHHH
Q psy10680 453 -----FPDNTENYVHRIGRTARSTKTGISYTLFTPLNGN---------KAQDLIDILNEAHQFVPDRL 506 (537)
Q Consensus 453 -----~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~---------~~~~~~~~l~~~~~~~~~~l 506 (537)
.|.+...|+||+||+||. ..|.++++++..+.. ...++...++..+..+|...
T Consensus 519 adifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~~~~~~iq~~~~~~~~~~p~~~ 585 (655)
T TIGR00631 519 ADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTI 585 (655)
T ss_pred cccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHHHhHHHHHhhhhhhcCCCCccc
Confidence 799999999999999997 689999999975432 23333444444444555443
No 109
>KOG0385|consensus
Probab=99.78 E-value=1.5e-17 Score=170.09 Aligned_cols=377 Identities=17% Similarity=0.164 Sum_probs=215.8
Q ss_pred CCChhhhhhhhccc----cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 45 KPTSIQAQSWPICL----SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~----~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
.+++||.+-+..+. .|-|.|+...+|-|||+. .++.+..+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ------------------------------------tIs~l~yl 210 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ------------------------------------TISLLGYL 210 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH------------------------------------HHHHHHHH
Confidence 78999999876655 566999999999999986 44445444
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH---hccCCcEEEeCCchhHHHHh
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD---LCRGAEIVVATPGRLIDFLE 197 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~Ivv~Tp~~l~~~l~ 197 (537)
..... ..||. ||+||...|.+. ..+++.+.+ ++++++++|+........+ .....+|+|||.+...+-
T Consensus 211 ~~~~~---~~GPf-LVi~P~StL~NW-~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d-- 281 (971)
T KOG0385|consen 211 KGRKG---IPGPF-LVIAPKSTLDNW-MNEFKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD-- 281 (971)
T ss_pred HHhcC---CCCCe-EEEeeHhhHHHH-HHHHHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--
Confidence 33221 12554 889999888664 566676666 6788899997643332222 123789999999987753
Q ss_pred cCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchh-----HHHHhhhCCcccccceeeecc
Q psy10680 198 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGR-----LIDFLESGTTNVNRITYLVLD 272 (537)
Q Consensus 198 ~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~-----~~~~l~~~~~~~~~~~~~~~~ 272 (537)
...+.--+.+++||||||++-+.. ..+..++..+...... ++++||-. +...+.- +.+..+...+
T Consensus 282 k~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~~~nrL----LlTGTPLQNNL~ELWaLLnF----llPdiF~~~e 351 (971)
T KOG0385|consen 282 KSFLKKFNWRYLVIDEAHRIKNEK--SKLSKILREFKTDNRL----LLTGTPLQNNLHELWALLNF----LLPDIFNSAE 351 (971)
T ss_pred HHHHhcCCceEEEechhhhhcchh--hHHHHHHHHhccccee----EeeCCcccccHHHHHHHHHh----hchhhccCHH
Confidence 112233457899999999997643 5566677666665555 88999732 2222221 1111111112
Q ss_pred chhhhhcCC----ChH-----------HH-HHHHHhhhcCC-Ccccce---eehhhhHHHHHHHHhhccccccceee---
Q psy10680 273 EADRMLDMG----FEP-----------QI-RKIIQMTRHAH-PVVPVS---LFISERRDTILHFLESGTTNVNRITY--- 329 (537)
Q Consensus 273 ~~~~~~~~~----~~~-----------~~-~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--- 329 (537)
..+..++.. ... .+ +.+........ +..-.. .......+....++.+.....+....
T Consensus 352 ~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k 431 (971)
T KOG0385|consen 352 DFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEK 431 (971)
T ss_pred HHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchh
Confidence 222222111 000 00 00000000000 000000 00011111111111111100000000
Q ss_pred eec----chhhhhhcC-----CChh-----HHHHHhhhccccceeechh-hHHHHHHhHhCceeEEEEeeccCccccccc
Q psy10680 330 LVL----DEADRMLDM-----GFEP-----QIRKIIQMTRFNTCVFLGY-VLYFWFILVAGIERWVFMEINHNGTETKHY 394 (537)
Q Consensus 330 ~~~----~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~if~~~~~~~~~l~~~ 394 (537)
..+ -..+++-.. ..++ ....++. .+....- .-........|++..||....+....+ ..
T Consensus 432 ~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~-----nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDIL-eD 505 (971)
T KOG0385|consen 432 TKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVT-----NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDIL-ED 505 (971)
T ss_pred hHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHh-----cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHH-HH
Confidence 000 000000000 0000 0000110 1111111 112233456778888888777777666 77
Q ss_pred cccccccccccccCCCCHHHHHHHHHHHhcC---CCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCC
Q psy10680 395 GVSSSLYRAMGIHGDKSQWNRDQTLRDFRSG---YINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARST 471 (537)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~ 471 (537)
+..-.++..+.+.|.++.++|...++.|... ..-+|++|.+.+-|||+..+++||.||..++|..=+|..-||.|-|
T Consensus 506 yc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIG 585 (971)
T KOG0385|consen 506 YCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIG 585 (971)
T ss_pred HHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhC
Confidence 7778899999999999999999999999753 3568899999999999999999999999999999999999999999
Q ss_pred CCceeE--EEecC
Q psy10680 472 KTGISY--TLFTP 482 (537)
Q Consensus 472 ~~g~~~--~l~~~ 482 (537)
+...+. -+++.
T Consensus 586 Q~K~V~V~RLite 598 (971)
T KOG0385|consen 586 QKKPVVVYRLITE 598 (971)
T ss_pred CcCceEEEEEecc
Confidence 976554 44444
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.76 E-value=8.3e-18 Score=181.98 Aligned_cols=153 Identities=19% Similarity=0.161 Sum_probs=95.6
Q ss_pred CCChhhhhhhhccc----c------CCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchh
Q psy10680 45 KPTSIQAQSWPICL----S------GRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYIL 114 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~----~------~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (537)
-|+.+|.+|+..+. + .+..++++|||||||++ .+.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t-----------------------------------~~~ 282 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLT-----------------------------------MLF 282 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHH-----------------------------------HHH
Confidence 47889999997753 2 25799999999999987 222
Q ss_pred hHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc-cCCcEEEeCCchhH
Q psy10680 115 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC-RGAEIVVATPGRLI 193 (537)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~ 193 (537)
+...+... ...+++|||+|+.+|..|+.+.+..+..... .+..+.......+. ....|+|+|.++|.
T Consensus 283 -la~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~ 350 (667)
T TIGR00348 283 -AARKALEL-----LKNPKVFFVVDRRELDYQLMKEFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFD 350 (667)
T ss_pred -HHHHHHhh-----cCCCeEEEEECcHHHHHHHHHHHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhh
Confidence 22333221 1257899999999999999999997753210 11111122222222 24689999999998
Q ss_pred HHHhcC--cccccce-eEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchh
Q psy10680 194 DFLESG--TTNVNRI-TYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGR 251 (537)
Q Consensus 194 ~~l~~~--~~~~~~l-~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~ 251 (537)
+.+... .....+. .+||+||||+.....+...+ ...++....+ .+||||.+
T Consensus 351 ~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l---~~~~p~a~~l----GfTaTP~~ 404 (667)
T TIGR00348 351 KKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNL---KKALKNASFF----GFTGTPIF 404 (667)
T ss_pred hhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHH---HhhCCCCcEE----EEeCCCcc
Confidence 644321 1111112 38999999997543322222 2445554455 89999854
No 111
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.75 E-value=4.3e-18 Score=183.01 Aligned_cols=305 Identities=18% Similarity=0.234 Sum_probs=185.5
Q ss_pred CChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCC
Q psy10680 46 PTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPK 125 (537)
Q Consensus 46 ~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 125 (537)
-+....+.+.++.++.-++|+||||||||.. +| ..++....
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTq-------------------------------------lP--~~lle~g~ 91 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQ-------------------------------------LP--QFLLEEGL 91 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHH-------------------------------------HH--HHHHhhhc
Confidence 3556667778888888999999999999976 22 22222221
Q ss_pred CCCCCCceEEEEcccHHHHHHHHHHHHHhc-ccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCccccc
Q psy10680 126 LEEGDGPIALVLAPTRELAQQIQAVISIFS-RTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVN 204 (537)
Q Consensus 126 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~ 204 (537)
+.++++.+.=|.+-=+..++.++..-. ...|-.|+...-. ......+..|-++|.+.|+..+..... ++
T Consensus 92 ---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRf------e~~~s~~Trik~mTdGiLlrei~~D~~-Ls 161 (845)
T COG1643 92 ---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRF------ESKVSPRTRIKVMTDGILLREIQNDPL-LS 161 (845)
T ss_pred ---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEe------eccCCCCceeEEeccHHHHHHHhhCcc-cc
Confidence 225678889999966667776665432 2222222111110 011224678999999999998875444 88
Q ss_pred ceeEEEecchhhhh-hCCC-hHHHHHHHhhccc-cccccCCceeecC--chhHHHHhhhCCcc-cc----cceeeeccch
Q psy10680 205 RITYLVLDEADRML-DMGF-EPQIRKIIQMTRT-RDLCRGAEIVVAT--PGRLIDFLESGTTN-VN----RITYLVLDEA 274 (537)
Q Consensus 205 ~l~liV~DE~h~~~-~~~~-~~~l~~il~~~~~-~~~~~~~~~~saT--p~~~~~~l~~~~~~-~~----~~~~~~~~~~ 274 (537)
.+++||+||+|+=. +..+ -.-+..++...++ .+.+ ++||| ..++..++.+.+.- +. ++........
T Consensus 162 ~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiI----imSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~ 237 (845)
T COG1643 162 GYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLI----IMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEA 237 (845)
T ss_pred cCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEE----EEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCC
Confidence 99999999999721 1111 1222333333332 4444 99999 78888888763211 11 1111000000
Q ss_pred hhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhc
Q psy10680 275 DRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 354 (537)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (537)
. .++.....+...+.....
T Consensus 238 ~--~d~~l~~ai~~~v~~~~~----------------------------------------------------------- 256 (845)
T COG1643 238 E--ADYILLDAIVAAVDIHLR----------------------------------------------------------- 256 (845)
T ss_pred C--cchhHHHHHHHHHHHhcc-----------------------------------------------------------
Confidence 0 000000011111111000
Q ss_pred cccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccc----cccccccccCCCCHHHHHHHHHHHhcCCCcEE
Q psy10680 355 RFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSS----SLYRAMGIHGDKSQWNRDQTLRDFRSGYINVL 430 (537)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iL 430 (537)
......+||..-..+.... ...+.+ ....++.+||.++.++|.++++--..|..+|+
T Consensus 257 ------------------~~~GdILvFLpG~~EI~~~-~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVV 317 (845)
T COG1643 257 ------------------EGSGSILVFLPGQREIERT-AEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVV 317 (845)
T ss_pred ------------------CCCCCEEEECCcHHHHHHH-HHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEE
Confidence 0011112555444444444 334433 34678889999999999998887777777799
Q ss_pred EEecccccCCCcCCccEEEEecC------------------CCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 431 IASDVASRGLDVEDIKYVVNYDF------------------PDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 431 vaT~~l~~Gidi~~~~~Vi~~d~------------------p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
+||++++.+|.||.+.+||.-+. |-|-.+..||.|||||. .+|.||-+++..+
T Consensus 318 lATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 318 LATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred EEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 99999999999999999995442 34677889999999997 6899999999743
No 112
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.75 E-value=5.1e-17 Score=175.17 Aligned_cols=133 Identities=20% Similarity=0.275 Sum_probs=119.3
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEec
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYD 452 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d 452 (537)
..+.+.+|||.+...++.+ ...+...|+++..+||+++..+|..+++.|+.|+..|+|||+.+++|+|+|++++||++|
T Consensus 444 ~~g~~viIf~~t~~~ae~L-~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d 522 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDL-TDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILD 522 (652)
T ss_pred hCCCEEEEEeCCHHHHHHH-HHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeC
Confidence 3567789999999999999 889999999999999999999999999999999999999999999999999999999988
Q ss_pred C-----CCChhhhHhhhhcccCCCCCceeEEEecC---------CCcchHHHHHHHHHHccccccHHHH
Q psy10680 453 F-----PDNTENYVHRIGRTARSTKTGISYTLFTP---------LNGNKAQDLIDILNEAHQFVPDRLL 507 (537)
Q Consensus 453 ~-----p~s~~~~~Q~~GRagR~~~~g~~~~l~~~---------~~~~~~~~~~~~l~~~~~~~~~~l~ 507 (537)
. |.+...|+||+||+||. ..|.++++++. .+....+++...++.....+|....
T Consensus 523 ~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 590 (652)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIK 590 (652)
T ss_pred CcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHH
Confidence 4 78999999999999996 78999999984 4666777788888888888887764
No 113
>COG4889 Predicted helicase [General function prediction only]
Probab=99.73 E-value=1.1e-16 Score=165.57 Aligned_cols=424 Identities=15% Similarity=0.133 Sum_probs=217.4
Q ss_pred eeEEEEeeeecccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccC----CcEEEEccCCCccccccccc
Q psy10680 5 VSVRLVSLEARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSG----RDLIGIAQTGSGKTLSLTIE 80 (537)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~----~~vli~apTGsGKT~~~~~~ 80 (537)
+....|.+.+... +.-.|+...+ .++...+. -..-+.|+|+|++|+.+...| ..-=+.+.+|+|||++
T Consensus 125 ~~~~~Iglsei~e--s~IDW~~f~p-~e~~~nl~-l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfT---- 196 (1518)
T COG4889 125 SPGMRIGLSEIAE--SPIDWDIFDP-TELQDNLP-LKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFT---- 196 (1518)
T ss_pred CccceecHHHHhc--CCCChhhcCc-cccccccc-cCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccch----
Confidence 3444555555555 5556666666 44555553 234569999999999988765 2333445669999998
Q ss_pred cchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhccccee
Q psy10680 81 NTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRI 160 (537)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 160 (537)
.|-+.+.+.. .++|+|||+.+|..|..+++..- ..+.+
T Consensus 197 --------------------------------sLkisEala~---------~~iL~LvPSIsLLsQTlrew~~~-~~l~~ 234 (1518)
T COG4889 197 --------------------------------SLKISEALAA---------ARILFLVPSISLLSQTLREWTAQ-KELDF 234 (1518)
T ss_pred --------------------------------HHHHHHHHhh---------hheEeecchHHHHHHHHHHHhhc-cCccc
Confidence 4445555432 45999999999999999888754 34455
Q ss_pred eEEEEEcCcchh-----------------------HhHHH--hccCCcEEEeCCchhHHHHhcCcccccceeEEEecchh
Q psy10680 161 RHACLYGGTSKM-----------------------YQTRD--LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEAD 215 (537)
Q Consensus 161 ~~~~~~~~~~~~-----------------------~~~~~--l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h 215 (537)
+...++.+.... ..+.. -..+-.||++|.+.+...-.....-+..+++||+||||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH 314 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH 314 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh
Confidence 555554432211 00111 11245699999999987766656678889999999999
Q ss_pred hhhhCCChHHHHHHHhhcccccc--ccCCceeecCchhHHHHhhhCCcccccceeeeccch----hhhhcCCChHHHHHH
Q psy10680 216 RMLDMGFEPQIRKIIQMTRTRDL--CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEA----DRMLDMGFEPQIRKI 289 (537)
Q Consensus 216 ~~~~~~~~~~l~~il~~~~~~~~--~~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 289 (537)
+...-.....-...+...+..+. ..+...++|||.-..+......-..+.. ...++.. +++...+|.+.+..-
T Consensus 315 RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~-l~SMDDe~~fGeef~rl~FgeAv~rd 393 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE-LSSMDDELTFGEEFHRLGFGEAVERD 393 (1518)
T ss_pred ccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce-eeccchhhhhchhhhcccHHHHHHhh
Confidence 96543221111111111111000 0111277888765544333322222111 1112211 222223333222111
Q ss_pred HHhhhcCCCcccceeehhh----------------hHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhh
Q psy10680 290 IQMTRHAHPVVPVSLFISE----------------RRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353 (537)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (537)
...++.......-... ..+..-.++-.+.....+-. .+...........+.-+.+.|.
T Consensus 394 ---lLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g---~~n~~~~~~~d~ap~~RAIaF~ 467 (1518)
T COG4889 394 ---LLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNG---EDNDLKNIKADTAPMQRAIAFA 467 (1518)
T ss_pred ---hhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcc---ccccccCCcCCchHHHHHHHHH
Confidence 1111111100000000 00000000000000000000 0000011111222333333443
Q ss_pred ccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHH---HhcCCCcEE
Q psy10680 354 TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRD---FRSGYINVL 430 (537)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---f~~g~~~iL 430 (537)
...++...+...+...-.+- . ++++.. .....+.+-.+.|.|...+|...++. |...+++||
T Consensus 468 k~I~tSK~i~~sFe~Vve~Y------------~--~Elk~d-~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIl 532 (1518)
T COG4889 468 KDIKTSKQIAESFETVVEAY------------D--EELKKD-FKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKIL 532 (1518)
T ss_pred HhhHHHHHHHHHHHHHHHHH------------H--HHHHhc-CCCceEEeecccccccHHHHHHHHhccCCCCcchheee
Confidence 33333322222221110000 0 111011 12223444456799999888444432 345778999
Q ss_pred EEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCC-CceeEEEec---------------CCCcchHHHHHHH
Q psy10680 431 IASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTK-TGISYTLFT---------------PLNGNKAQDLIDI 494 (537)
Q Consensus 431 vaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~-~g~~~~l~~---------------~~~~~~~~~~~~~ 494 (537)
--...+.+|+|+|.++.||++++..+..+.+|.+||+-|..+ +..++++.. +.+...+.++++.
T Consensus 533 SNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnA 612 (1518)
T COG4889 533 SNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKA 612 (1518)
T ss_pred ccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHH
Confidence 888999999999999999999999999999999999999543 223333322 2456667777888
Q ss_pred HHHccc
Q psy10680 495 LNEAHQ 500 (537)
Q Consensus 495 l~~~~~ 500 (537)
|..++.
T Consensus 613 LRShD~ 618 (1518)
T COG4889 613 LRSHDE 618 (1518)
T ss_pred HHhcCH
Confidence 866554
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.72 E-value=8.7e-17 Score=169.85 Aligned_cols=318 Identities=21% Similarity=0.244 Sum_probs=180.4
Q ss_pred ccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
+..|+ .|+..|+-.-..+.+|+++-+.||||.|||.- .+.+..
T Consensus 77 k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf------------------------------------g~~~sl 119 (1187)
T COG1110 77 KATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF------------------------------------GLLMSL 119 (1187)
T ss_pred HhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH------------------------------------HHHHHH
Confidence 44576 99999999999999999999999999999963 222222
Q ss_pred hhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccce-eeEEE-EEcCcchhH---hHHHhc-cCCcEEEeCCchh
Q psy10680 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR-IRHAC-LYGGTSKMY---QTRDLC-RGAEIVVATPGRL 192 (537)
Q Consensus 119 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~-~~~~~~~~~---~~~~l~-~~~~Ivv~Tp~~l 192 (537)
.+.. .|.++++|+||+.|+.|++..++.+....+ .++.. +++..+..+ ...++. .+.+|+|+|.+-+
T Consensus 120 ~~a~-------kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 120 YLAK-------KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred HHHh-------cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 2211 267799999999999999999999886554 33333 555544333 233333 4799999998666
Q ss_pred HHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHHHhhhCCcccccceeeec
Q psy10680 193 IDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESGTTNVNRITYLVL 271 (537)
Q Consensus 193 ~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~~~~~~~~~~~~~~~ 271 (537)
..-+.. ..--++++|++|++|.++..+ ..+..++..+--..-. +-+|. -..+...+.
T Consensus 193 ~k~~e~--L~~~kFdfifVDDVDA~Lkas--kNvDriL~LlGf~eE~----i~~a~~~~~lr~~~~-------------- 250 (1187)
T COG1110 193 SKRFEE--LSKLKFDFIFVDDVDAILKAS--KNVDRLLRLLGFSEEV----IESAYELIKLRRKLY-------------- 250 (1187)
T ss_pred HhhHHH--hcccCCCEEEEccHHHHHhcc--ccHHHHHHHcCCCHHH----HHHHHHHHHHHHHhh--------------
Confidence 544332 112368999999999988654 4455555443221100 00010 000000000
Q ss_pred cchhhhhcCCChHHHHHHHHh-------hhcCCCcccce-eehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCC
Q psy10680 272 DEADRMLDMGFEPQIRKIIQM-------TRHAHPVVPVS-LFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGF 343 (537)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (537)
..+ ....+...... .........++ .....+.. ....+..-.+..-......+.+. .+...
T Consensus 251 -~~~------~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~-R~~LfReLlgFevG~~~~~LRNI---vD~y~ 319 (1187)
T COG1110 251 -GEK------RAERVREELREVEREREKKRRKLGILVVSSATGKPRGS-RLKLFRELLGFEVGSGGEGLRNI---VDIYV 319 (1187)
T ss_pred -hhh------hHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCc-hHHHHHHHhCCccCccchhhhhe---eeeec
Confidence 000 00011111111 01111111111 11111111 11111111110000000000000 00000
Q ss_pred hhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEee---ccCccccccccccccccccccccCCCCHHHHHHHHH
Q psy10680 344 EPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEI---NHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLR 420 (537)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~---~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 420 (537)
.......++.. ...-|...+||+.. ...++++ ...+...|+++..+|+. ....++
T Consensus 320 --------------~~~~~e~~~el--vk~lG~GgLIfV~~d~G~e~aeel-~e~Lr~~Gi~a~~~~a~-----~~~~le 377 (1187)
T COG1110 320 --------------ESESLEKVVEL--VKKLGDGGLIFVPIDYGREKAEEL-AEYLRSHGINAELIHAE-----KEEALE 377 (1187)
T ss_pred --------------cCccHHHHHHH--HHHhCCCeEEEEEcHHhHHHHHHH-HHHHHhcCceEEEeecc-----chhhhh
Confidence 00111112222 22345577799998 7778888 89999999999999983 366799
Q ss_pred HHhcCCCcEEEEec----ccccCCCcCC-ccEEEEecCCC
Q psy10680 421 DFRSGYINVLIASD----VASRGLDVED-IKYVVNYDFPD 455 (537)
Q Consensus 421 ~f~~g~~~iLvaT~----~l~~Gidi~~-~~~Vi~~d~p~ 455 (537)
.|..|++++||++. .+.+|+|+|. +..+|+++.|+
T Consensus 378 ~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 378 DFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred hhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 99999999999885 7889999996 88999999983
No 115
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.72 E-value=1.5e-16 Score=147.11 Aligned_cols=169 Identities=40% Similarity=0.595 Sum_probs=129.9
Q ss_pred cCCCCCCChhhhhhhhccccC-CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 40 NSGYGKPTSIQAQSWPICLSG-RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~~~~~-~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
.+++..|+++|.+++..+..+ +++++.+|||+|||.+ +..+++.
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~-----------------------------------~~~~~~~ 47 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLA-----------------------------------ALLPALE 47 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHH-----------------------------------HHHHHHH
Confidence 456789999999999999988 9999999999999998 6666666
Q ss_pred hhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCC-cEEEeCCchhHHHHh
Q psy10680 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGA-EIVVATPGRLIDFLE 197 (537)
Q Consensus 119 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~Ivv~Tp~~l~~~l~ 197 (537)
.+.... ..+++|++|+..++.|+...+...............++......+..+..+. +++++|++.+...+.
T Consensus 48 ~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~ 121 (201)
T smart00487 48 ALKRGK------GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLE 121 (201)
T ss_pred HhcccC------CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHH
Confidence 665432 3459999999999999999998877654423344444444344455555555 999999999999988
Q ss_pred cCcccccceeEEEecchhhhhhCCChHHHHHHHhhcc-ccccccCCceeecCchhHH
Q psy10680 198 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR-TRDLCRGAEIVVATPGRLI 253 (537)
Q Consensus 198 ~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~-~~~~~~~~~~~saTp~~~~ 253 (537)
.......+++++|+||+|++....+...+..++..++ ..... ++||||....
T Consensus 122 ~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v----~~saT~~~~~ 174 (201)
T smart00487 122 NDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLL----LLSATPPEEI 174 (201)
T ss_pred cCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEE----EEecCCchhH
Confidence 7777788899999999999987567777777777662 23444 8899975443
No 116
>KOG0922|consensus
Probab=99.71 E-value=1.1e-16 Score=162.86 Aligned_cols=83 Identities=23% Similarity=0.436 Sum_probs=72.3
Q ss_pred cccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecC------------------CCChhhhHhhh
Q psy10680 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF------------------PDNTENYVHRI 464 (537)
Q Consensus 403 ~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~------------------p~s~~~~~Q~~ 464 (537)
+..+||.++.++|.++.+.-..|..+|++||++++..+.|+.+..||.-++ |-|-..-.||.
T Consensus 293 ~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRa 372 (674)
T KOG0922|consen 293 ILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRA 372 (674)
T ss_pred eeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhc
Confidence 456899999999999998888899999999999999999999999995442 44777889999
Q ss_pred hcccCCCCCceeEEEecCCCcc
Q psy10680 465 GRTARSTKTGISYTLFTPLNGN 486 (537)
Q Consensus 465 GRagR~~~~g~~~~l~~~~~~~ 486 (537)
|||||. .+|.|+-++++++.+
T Consensus 373 GRAGRt-~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 373 GRAGRT-GPGKCYRLYTESAYD 393 (674)
T ss_pred ccCCCC-CCceEEEeeeHHHHh
Confidence 999997 589999999986643
No 117
>KOG0390|consensus
Probab=99.69 E-value=7.1e-16 Score=162.71 Aligned_cols=390 Identities=15% Similarity=0.147 Sum_probs=218.5
Q ss_pred CCChhhhhhhhccccC----------CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchh
Q psy10680 45 KPTSIQAQSWPICLSG----------RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYIL 114 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~----------~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (537)
.++|+|++.+..+.++ .+.|++-.+|+|||+. .+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq------------------------------------~I 281 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ------------------------------------CI 281 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH------------------------------------HH
Confidence 6789999999876632 2578899999999996 67
Q ss_pred hHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcch-hHhHHHh------ccCCcEEEe
Q psy10680 115 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK-MYQTRDL------CRGAEIVVA 187 (537)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l------~~~~~Ivv~ 187 (537)
+.+..++++.......-.+.|||+|. .|+.-|..++.++.....+....+++.... +.....+ .....|++.
T Consensus 282 sflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~ 360 (776)
T KOG0390|consen 282 SFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLII 360 (776)
T ss_pred HHHHHHHHhCcCccccccccEEEccH-HHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEec
Confidence 77777776644322223568999998 788888999988876557777777777664 1111111 013457777
Q ss_pred CCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCc--hhHHHHhhhCCc-ccc
Q psy10680 188 TPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATP--GRLIDFLESGTT-NVN 264 (537)
Q Consensus 188 Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp--~~~~~~l~~~~~-~~~ 264 (537)
+.+.+..... .+....++++|+||.|+.-+ -...+...+..+..++.+ ++|+|| ..+.+++.-..+ +..
T Consensus 361 sye~~~~~~~--~il~~~~glLVcDEGHrlkN--~~s~~~kaL~~l~t~rRV----LLSGTp~QNdl~EyFnlL~fvrP~ 432 (776)
T KOG0390|consen 361 SYETASDYCR--KILLIRPGLLVCDEGHRLKN--SDSLTLKALSSLKTPRRV----LLTGTPIQNDLKEYFNLLDFVRPG 432 (776)
T ss_pred cHHHHHHHHH--HHhcCCCCeEEECCCCCccc--hhhHHHHHHHhcCCCceE----EeeCCcccccHHHHHHHHhhcChh
Confidence 7777764333 35678899999999999754 345677777777777777 999995 222332221110 000
Q ss_pred cceeeeccc-hhhh--h---cCCC-------h---HHHHHHHHhhhcCCCc------cc----ceeeh--hhhHHHHHHH
Q psy10680 265 RITYLVLDE-ADRM--L---DMGF-------E---PQIRKIIQMTRHAHPV------VP----VSLFI--SERRDTILHF 316 (537)
Q Consensus 265 ~~~~~~~~~-~~~~--~---~~~~-------~---~~~~~~~~~~~~~~~~------~~----~~~~~--~~~~~~~~~~ 316 (537)
-+....... ..+. . +.+. . ..+..+....-..... .| .-.+. ......+...
T Consensus 433 ~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~ 512 (776)
T KOG0390|consen 433 FLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKK 512 (776)
T ss_pred hccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHH
Confidence 000000000 0000 0 0000 0 1122222221111111 00 00000 0111111111
Q ss_pred Hhhcc-----------------ccccceeeeecchhhhhhcCCChhHHHHHh--hhccccceeechhhHHHHHHhH-hC-
Q psy10680 317 LESGT-----------------TNVNRITYLVLDEADRMLDMGFEPQIRKII--QMTRFNTCVFLGYVLYFWFILV-AG- 375 (537)
Q Consensus 317 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~- 375 (537)
+.... ...+....+...+...-......+...... .............+..+...+. -.
T Consensus 513 l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~e 592 (776)
T KOG0390|consen 513 LLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIRE 592 (776)
T ss_pred HHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhh
Confidence 11100 000000000000000000000000000000 0111223333444444444432 22
Q ss_pred --ceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCC---CcEEEEecccccCCCcCCccEEEE
Q psy10680 376 --IERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGY---INVLIASDVASRGLDVEDIKYVVN 450 (537)
Q Consensus 376 --~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~iLvaT~~l~~Gidi~~~~~Vi~ 450 (537)
....+++.......++......-.|+.++.+||.|+..+|..+++.|.+.. .-+|.+|.+.++||++-.++-||.
T Consensus 593 k~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil 672 (776)
T KOG0390|consen 593 KLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL 672 (776)
T ss_pred hcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE
Confidence 223355555555555556666667999999999999999999999998643 336667789999999999999999
Q ss_pred ecCCCChhhhHhhhhcccCCCCCceeEEE
Q psy10680 451 YDFPDNTENYVHRIGRTARSTKTGISYTL 479 (537)
Q Consensus 451 ~d~p~s~~~~~Q~~GRagR~~~~g~~~~l 479 (537)
+|++++|..=.|.++||=|.|++-.|++|
T Consensus 673 ~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 673 FDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred eCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 99999999999999999999998776654
No 118
>KOG0387|consensus
Probab=99.68 E-value=5.2e-16 Score=159.83 Aligned_cols=386 Identities=16% Similarity=0.108 Sum_probs=215.3
Q ss_pred CCChhhhhhhhccc----cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 45 KPTSIQAQSWPICL----SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~----~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
.+.+||++.+..+. ++..-|+-..+|-|||.. +++.|..+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ------------------------------------iisFLaaL 248 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ------------------------------------IISFLAAL 248 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh------------------------------------HHHHHHHH
Confidence 55789999887765 556899999999999975 44444444
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcch--------hHhHHH-----hccCCcEEEe
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK--------MYQTRD-----LCRGAEIVVA 187 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-----l~~~~~Ivv~ 187 (537)
....+. .+.+|||||. .++.||..++..+++ .+++..+++.... ...+.. ...+..|+|+
T Consensus 249 ~~S~k~----~~paLIVCP~-Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilit 321 (923)
T KOG0387|consen 249 HHSGKL----TKPALIVCPA-TIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILIT 321 (923)
T ss_pred hhcccc----cCceEEEccH-HHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEE
Confidence 433221 2448999998 778899999998877 4566777765442 111111 1235679999
Q ss_pred CCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchh-----HHHHhhh-CCc
Q psy10680 188 TPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGR-----LIDFLES-GTT 261 (537)
Q Consensus 188 Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~-----~~~~l~~-~~~ 261 (537)
|.+.+.. ....+.-...+++|+||.|.+-+++ ..+...+..++....+ ++|.||-. +...+.- .+.
T Consensus 322 ty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNpn--s~islackki~T~~Ri----ILSGTPiQNnL~ELwsLfDFv~PG 393 (923)
T KOG0387|consen 322 TYDGFRI--QGDDLLGILWDYVILDEGHRIRNPN--SKISLACKKIRTVHRI----ILSGTPIQNNLTELWSLFDFVFPG 393 (923)
T ss_pred ehhhhcc--cCcccccccccEEEecCcccccCCc--cHHHHHHHhccccceE----EeeCccccchHHHHHHHhhhccCC
Confidence 9876653 2233445567899999999997754 5566666777776666 99999632 2211110 011
Q ss_pred ccccceeeeccc----------------------hhhhhcCCChHHHH-HHHHhhhc-----CCCcccceeehhhhHHHH
Q psy10680 262 NVNRITYLVLDE----------------------ADRMLDMGFEPQIR-KIIQMTRH-----AHPVVPVSLFISERRDTI 313 (537)
Q Consensus 262 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 313 (537)
.+.......-.- +...+..-..|.+. .+...... -...+.+...........
T Consensus 394 ~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y 473 (923)
T KOG0387|consen 394 KLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLY 473 (923)
T ss_pred cccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHH
Confidence 111000000000 00011111111111 11111111 011111111122222222
Q ss_pred HHHHhhcc--cccccee-ee-ecc----hh--hhhhcCCChhHHHHHhhhccccceeechhhHHHHHHh-HhCceeEEEE
Q psy10680 314 LHFLESGT--TNVNRIT-YL-VLD----EA--DRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFIL-VAGIERWVFM 382 (537)
Q Consensus 314 ~~~~~~~~--~~~~~~~-~~-~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~if~ 382 (537)
..++.... ...+... .+ ... .| ..++....+.....--..-....+.....+...+..- ..+.+.++|.
T Consensus 474 ~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFs 553 (923)
T KOG0387|consen 474 QRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFS 553 (923)
T ss_pred HHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEeh
Confidence 22221110 0000000 00 000 00 0000000000000000001112233333333333222 3455666777
Q ss_pred eeccCcccccccccc-ccccccccccCCCCHHHHHHHHHHHhcCCC--cEEEEecccccCCCcCCccEEEEecCCCChhh
Q psy10680 383 EINHNGTETKHYGVS-SSLYRAMGIHGDKSQWNRDQTLRDFRSGYI--NVLIASDVASRGLDVEDIKYVVNYDFPDNTEN 459 (537)
Q Consensus 383 ~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~--~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~ 459 (537)
.+......+ ...|. ..++....+.|..+...|...+++|.++.. -+|++|.+.+-|+|+..++-||+||+.++|..
T Consensus 554 qs~~mLdil-E~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPSt 632 (923)
T KOG0387|consen 554 QSRQMLDIL-ESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPST 632 (923)
T ss_pred hHHHHHHHH-HHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCcc
Confidence 666666666 77777 689999999999999999999999997663 46778899999999999999999999999999
Q ss_pred hHhhhhcccCCCCCceeE--EEecC
Q psy10680 460 YVHRIGRTARSTKTGISY--TLFTP 482 (537)
Q Consensus 460 ~~Q~~GRagR~~~~g~~~--~l~~~ 482 (537)
=.|..-||=|.|++..++ -+++.
T Consensus 633 D~QAreRawRiGQkkdV~VYRL~t~ 657 (923)
T KOG0387|consen 633 DNQARERAWRIGQKKDVVVYRLMTA 657 (923)
T ss_pred chHHHHHHHhhcCccceEEEEEecC
Confidence 999999999999976544 34444
No 119
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.68 E-value=4.7e-17 Score=126.47 Aligned_cols=77 Identities=40% Similarity=0.599 Sum_probs=73.9
Q ss_pred cccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCC
Q psy10680 395 GVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARST 471 (537)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~ 471 (537)
.|...++++..+||+++..+|..+++.|++++.+|||||+++++|+|+|.+++||++++|+++..|.|++||+||.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999986
No 120
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.67 E-value=1.6e-15 Score=169.42 Aligned_cols=117 Identities=13% Similarity=0.089 Sum_probs=80.1
Q ss_pred ceeEEEEeeccCccccccccccc----cccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCcc--EEE
Q psy10680 376 IERWVFMEINHNGTETKHYGVSS----SLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIK--YVV 449 (537)
Q Consensus 376 ~~~~if~~~~~~~~~l~~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~--~Vi 449 (537)
.+.+|||.+....+.+ ...+.. .++.+ +..+.. ..|..+++.|++++..||+||+.+.+|||+|... +||
T Consensus 675 g~~LVlftS~~~l~~v-~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~vi 750 (850)
T TIGR01407 675 PKILVLFTSYEMLHMV-YDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLV 750 (850)
T ss_pred CCEEEEeCCHHHHHHH-HHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEE
Confidence 4566999998888777 433332 23333 233333 4688899999999999999999999999999765 456
Q ss_pred EecCCC------------------------------ChhhhHhhhhcccCCCCCceeEEEecCC--CcchHHHHHHHHH
Q psy10680 450 NYDFPD------------------------------NTENYVHRIGRTARSTKTGISYTLFTPL--NGNKAQDLIDILN 496 (537)
Q Consensus 450 ~~d~p~------------------------------s~~~~~Q~~GRagR~~~~g~~~~l~~~~--~~~~~~~~~~~l~ 496 (537)
....|- ....+.|.+||.=|..+..-++++++++ ....-+.+.+.+.
T Consensus 751 I~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 751 IPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred EeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 666441 1234578999999976554456667765 4444566666665
No 121
>KOG0920|consensus
Probab=99.65 E-value=6.1e-16 Score=165.93 Aligned_cols=343 Identities=15% Similarity=0.178 Sum_probs=194.9
Q ss_pred CChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCC
Q psy10680 46 PTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPK 125 (537)
Q Consensus 46 ~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 125 (537)
-+..+.+.+.++.+++.++|+|.||+|||.. .---++......+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQ-----------------------------------vpQfiLd~~~~~~- 217 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQ-----------------------------------VPQFILDEAIESG- 217 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhh-----------------------------------hhHHHHHHHHhcC-
Confidence 3566777778888989999999999999976 1111222222222
Q ss_pred CCCCCCceEEEEcccHHHHHHHHHHHHH-hcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCccccc
Q psy10680 126 LEEGDGPIALVLAPTRELAQQIQAVISI-FSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVN 204 (537)
Q Consensus 126 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~ 204 (537)
....+++--|.+-=+-.+++++.. .+...|-.++--..... ....+..+.+||.+.|+..|.. ...+.
T Consensus 218 ----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~-~~~l~ 286 (924)
T KOG0920|consen 218 ----AACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQS-DPTLS 286 (924)
T ss_pred ----CCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhcc-Ccccc
Confidence 355688889998777777776653 22223322211111111 1123477999999999998876 45678
Q ss_pred ceeEEEecchhhhhh-CC-ChHHHHHHHhhccccccccCCceeecC--chhHHHHhhhCCcccccceeeeccchhhhhcC
Q psy10680 205 RITYLVLDEADRMLD-MG-FEPQIRKIIQMTRTRDLCRGAEIVVAT--PGRLIDFLESGTTNVNRITYLVLDEADRMLDM 280 (537)
Q Consensus 205 ~l~liV~DE~h~~~~-~~-~~~~l~~il~~~~~~~~~~~~~~~saT--p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 280 (537)
.+..||+||+|.=.- .. +--.+..++..-+..+.+ ++||| .+.+.+++...+. ..+....+.-..
T Consensus 287 ~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvI----LMSAT~dae~fs~YF~~~pv--i~i~grtfpV~~----- 355 (924)
T KOG0920|consen 287 GVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVI----LMSATLDAELFSDYFGGCPV--ITIPGRTFPVKE----- 355 (924)
T ss_pred cCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEE----EeeeecchHHHHHHhCCCce--EeecCCCcchHH-----
Confidence 899999999997322 22 223344444444445555 99999 6666666664221 111111111111
Q ss_pred CChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhcccccee
Q psy10680 281 GFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV 360 (537)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (537)
-|.+++.............. ...... ......+.. .+.. ....
T Consensus 356 ~fLEDil~~~~~~~~~~~~~-----~~~~~~---------~~~~~~~~~-------------~~~~----------id~~ 398 (924)
T KOG0920|consen 356 YFLEDILSKTGYVSEDDSAR-----SGPERS---------QLRLARLKL-------------WEPE----------IDYD 398 (924)
T ss_pred HHHHHHHHHhcccccccccc-----cccccC---------ccccccchh-------------cccc----------ccHH
Confidence 11112222221111111000 000000 000000000 0000 0111
Q ss_pred echhhHHHHHHhHhCceeEEEEeeccCcccccccccc------ccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy10680 361 FLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVS------SSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASD 434 (537)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~------~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~ 434 (537)
.+..++..+...+....-+||.........+...+.. ...+-+..+|+.|+..+|+.+...--.|..+||++|+
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 1111222222222233344666666555555333221 1235566789999999999999988899999999999
Q ss_pred ccccCCCcCCccEEEE--------ecCC----------CChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 435 VASRGLDVEDIKYVVN--------YDFP----------DNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 435 ~l~~Gidi~~~~~Vi~--------~d~p----------~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
+++..|.|+++-+||. ||+- -|...-.||.|||||. ..|.||-++....
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 9999999999999995 4432 2455668999999998 8999999998754
No 122
>KOG0923|consensus
Probab=99.63 E-value=1.6e-15 Score=153.05 Aligned_cols=311 Identities=18% Similarity=0.190 Sum_probs=179.5
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
..+++-.+.+.++..+.-+||.|.||||||.. + -+.+...+
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTTQ-------------------------------------i--PQyL~EaG 305 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ-------------------------------------I--PQYLYEAG 305 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCcccc-------------------------------------c--cHHHHhcc
Confidence 44566777788888888899999999999976 2 23344333
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCccccc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVN 204 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~ 204 (537)
-.. .|.++=+--|.+--+..++.++.. .+|++.+.-.|-.-..+. --....-|=++|.+.|+.-+... .++.
T Consensus 306 ytk--~gk~IgcTQPRRVAAmSVAaRVA~---EMgvkLG~eVGYsIRFEd--cTSekTvlKYMTDGmLlREfL~e-pdLa 377 (902)
T KOG0923|consen 306 YTK--GGKKIGCTQPRRVAAMSVAARVAE---EMGVKLGHEVGYSIRFED--CTSEKTVLKYMTDGMLLREFLSE-PDLA 377 (902)
T ss_pred ccc--CCceEeecCcchHHHHHHHHHHHH---HhCcccccccceEEEecc--ccCcceeeeeecchhHHHHHhcc-cccc
Confidence 222 244467778998888888766652 222222211121110000 00123456799999988754332 4578
Q ss_pred ceeEEEecchhhh-h-hCCChHHHHHHHhhccccccccCCceeecC--chhHHHHhhhCCcccccceeeeccchhhhhcC
Q psy10680 205 RITYLVLDEADRM-L-DMGFEPQIRKIIQMTRTRDLCRGAEIVVAT--PGRLIDFLESGTTNVNRITYLVLDEADRMLDM 280 (537)
Q Consensus 205 ~l~liV~DE~h~~-~-~~~~~~~l~~il~~~~~~~~~~~~~~~saT--p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 280 (537)
++++||+||||.= + -.-....+..|....+..+.. +.||| ...+..|+...+...-+-.....+-. ....
T Consensus 378 sYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKll----IsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~--Yt~~ 451 (902)
T KOG0923|consen 378 SYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLL----ISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIF--YTKA 451 (902)
T ss_pred ceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEE----eeccccCHHHHHHhccCCcEEeccCcccceeee--cccC
Confidence 8999999999972 1 111223334444444445555 88999 78888888875432211111000000 0000
Q ss_pred CChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhcccccee
Q psy10680 281 GFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV 360 (537)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (537)
.-.+.+...+......+...+.
T Consensus 452 PEAdYldAai~tVlqIH~tqp~---------------------------------------------------------- 473 (902)
T KOG0923|consen 452 PEADYLDAAIVTVLQIHLTQPL---------------------------------------------------------- 473 (902)
T ss_pred CchhHHHHHHhhheeeEeccCC----------------------------------------------------------
Confidence 0001111111111111110000
Q ss_pred echhhHHHHHHhHhCceeEEEEeeccCcccc------cccccccc--ccccccccCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy10680 361 FLGYVLYFWFILVAGIERWVFMEINHNGTET------KHYGVSSS--LYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIA 432 (537)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l------~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLva 432 (537)
..-+||..-....+.. .+..|... .+-++.+|+.+++..|..+.+--..|..+|++|
T Consensus 474 ---------------GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLA 538 (902)
T KOG0923|consen 474 ---------------GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLA 538 (902)
T ss_pred ---------------ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEe
Confidence 0000222111111000 02222222 245678999999999999998888899999999
Q ss_pred ecccccCCCcCCccEEEEecC------------------CCChhhhHhhhhcccCCCCCceeEEEecC
Q psy10680 433 SDVASRGLDVEDIKYVVNYDF------------------PDNTENYVHRIGRTARSTKTGISYTLFTP 482 (537)
Q Consensus 433 T~~l~~Gidi~~~~~Vi~~d~------------------p~s~~~~~Q~~GRagR~~~~g~~~~l~~~ 482 (537)
|++++..+.|+++.+||.-++ |-|..+-.||+|||||.| +|.|+-+++.
T Consensus 539 TNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 539 TNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred ecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 999999999999999995442 346777899999999985 7899999985
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=2e-15 Score=161.92 Aligned_cols=109 Identities=15% Similarity=0.105 Sum_probs=97.7
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcC---CccE--
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVE---DIKY-- 447 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~---~~~~-- 447 (537)
..+...+|||.+...++.+ +..|...+++...+|+ ...+|...+..|+.+...|+|||++++||+||+ .+..
T Consensus 596 ~~grpVLIft~Sve~sE~L-s~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vG 672 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETL-SRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELG 672 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHH-HHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhC
Confidence 3567889999999999888 9999999999999997 577889999999999999999999999999998 4533
Q ss_pred ---EEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 448 ---VVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 448 ---Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
||.++.|.|...|.|++||+||.|.+|.+++|++..|
T Consensus 673 GL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 673 GLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred CceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 4888899999999999999999999999999998865
No 124
>KOG0384|consensus
Probab=99.62 E-value=8.9e-15 Score=157.04 Aligned_cols=381 Identities=17% Similarity=0.180 Sum_probs=219.0
Q ss_pred CCCChhhhhhhhccc----cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHh
Q psy10680 44 GKPTSIQAQSWPICL----SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYH 119 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~----~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 119 (537)
..++.||-+-+..++ .+.++|+...+|-|||.. .+..|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq------------------------------------ti~fl~~ 412 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ------------------------------------TITFLSY 412 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH------------------------------------HHHHHHH
Confidence 488999999887766 568999999999999975 3333433
Q ss_pred hhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----cc-----CCcEEEeCCc
Q psy10680 120 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CR-----GAEIVVATPG 190 (537)
Q Consensus 120 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~-----~~~Ivv~Tp~ 190 (537)
+....+ ..||. |+|||...+.... +.+..+. ++++++++|.....+..+.. .. .++++++|.+
T Consensus 413 l~~~~~---~~gpf-lvvvplst~~~W~-~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye 484 (1373)
T KOG0384|consen 413 LFHSLQ---IHGPF-LVVVPLSTITAWE-REFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYE 484 (1373)
T ss_pred HHHhhh---ccCCe-EEEeehhhhHHHH-HHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhH
Confidence 332221 12554 7889998776654 4444433 78899999987755544432 11 4789999998
Q ss_pred hhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchhH-HHHhhhCCcccccceee
Q psy10680 191 RLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRL-IDFLESGTTNVNRITYL 269 (537)
Q Consensus 191 ~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~~-~~~l~~~~~~~~~~~~~ 269 (537)
.++.--. .+.--...++++||||++.+. ...+...+..+...... +++.||... ..-|.++...+.+-.+.
T Consensus 485 ~~LkDk~--~L~~i~w~~~~vDeahrLkN~--~~~l~~~l~~f~~~~rl----litgTPlQNsikEL~sLl~Fl~P~kf~ 556 (1373)
T KOG0384|consen 485 IVLKDKA--ELSKIPWRYLLVDEAHRLKND--ESKLYESLNQFKMNHRL----LITGTPLQNSLKELWSLLHFLMPGKFD 556 (1373)
T ss_pred HHhccHh--hhccCCcceeeecHHhhcCch--HHHHHHHHHHhccccee----eecCCCccccHHHHHHHhcccCCCCCC
Confidence 8764211 112233568999999998753 34555556555554444 788887432 11222211111112221
Q ss_pred eccchhhhhcCCChHHH------------HHHHHhhhcCCCccc---ceeehhh----hHHHHH----HHHhhccccc--
Q psy10680 270 VLDEADRMLDMGFEPQI------------RKIIQMTRHAHPVVP---VSLFISE----RRDTIL----HFLESGTTNV-- 324 (537)
Q Consensus 270 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~----~~~~~~~~~~-- 324 (537)
..++...-.+......+ +.+...+....+... ..+.+.. ..+.++ ..+..+....
T Consensus 557 ~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~ 636 (1373)
T KOG0384|consen 557 SWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTP 636 (1373)
T ss_pred cHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCc
Confidence 11111111111111111 111222222211111 1111111 111111 1111111111
Q ss_pred -------------cceeeeecchhhhhhcCCC-----hhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeecc
Q psy10680 325 -------------NRITYLVLDEADRMLDMGF-----EPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINH 386 (537)
Q Consensus 325 -------------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~ 386 (537)
++.. + ........-... ....+.++... -.++.+..+ .......|++..||....+
T Consensus 637 ~lLNimmELkKccNHpy-L-i~gaee~~~~~~~~~~~d~~L~~lI~sS--GKlVLLDKL--L~rLk~~GHrVLIFSQMVR 710 (1373)
T KOG0384|consen 637 SLLNIMMELKKCCNHPY-L-IKGAEEKILGDFRDKMRDEALQALIQSS--GKLVLLDKL--LPRLKEGGHRVLIFSQMVR 710 (1373)
T ss_pred hHHHHHHHHHHhcCCcc-c-cCcHHHHHHHhhhhcchHHHHHHHHHhc--CcEEeHHHH--HHHHhcCCceEEEhHHHHH
Confidence 1110 0 000000000000 01112222111 112222221 2233456678888887777
Q ss_pred CccccccccccccccccccccCCCCHHHHHHHHHHHhc---CCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhh
Q psy10680 387 NGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRS---GYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHR 463 (537)
Q Consensus 387 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~ 463 (537)
-...+ +.+|...+++...+.|++..+.|++.++.|.. ...-+|+||.+.+-|||+..++.||+||..++|..=+|.
T Consensus 711 mLDIL-~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQA 789 (1373)
T KOG0384|consen 711 MLDIL-AEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQA 789 (1373)
T ss_pred HHHHH-HHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHH
Confidence 77777 99999999999999999999999999999975 345699999999999999999999999999999999999
Q ss_pred hhcccCCCCCce--eEEEecCC
Q psy10680 464 IGRTARSTKTGI--SYTLFTPL 483 (537)
Q Consensus 464 ~GRagR~~~~g~--~~~l~~~~ 483 (537)
..||.|-|++.. +|-|++..
T Consensus 790 qARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 790 QARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred HHHHHhhcccceEEEEEEecCC
Confidence 999999999765 45556654
No 125
>KOG0953|consensus
Probab=99.62 E-value=4.4e-15 Score=147.44 Aligned_cols=259 Identities=20% Similarity=0.206 Sum_probs=162.1
Q ss_pred cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccH
Q psy10680 62 DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTR 141 (537)
Q Consensus 62 ~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~ 141 (537)
=++-+|||.||||+- +++++.... ..+|--|.+
T Consensus 193 Ii~H~GPTNSGKTy~---------------------------------------ALqrl~~ak--------sGvycGPLr 225 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYR---------------------------------------ALQRLKSAK--------SGVYCGPLR 225 (700)
T ss_pred EEEEeCCCCCchhHH---------------------------------------HHHHHhhhc--------cceecchHH
Confidence 355589999999987 677776543 278999999
Q ss_pred HHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCC
Q psy10680 142 ELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMG 221 (537)
Q Consensus 142 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~ 221 (537)
-|+.+++.++... |+.+-.++|......... ...++.+=||.|... --..+++.|+||+++|.+..
T Consensus 226 LLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~ 291 (700)
T KOG0953|consen 226 LLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPS 291 (700)
T ss_pred HHHHHHHHHhhhc----CCCccccccceeeecCCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcc
Confidence 9999999998754 566666776544332211 234677888876543 23558999999999999988
Q ss_pred ChHHHHHHHhhccccccccCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCccc
Q psy10680 222 FEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVP 301 (537)
Q Consensus 222 ~~~~l~~il~~~~~~~~~~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (537)
++-.+.+.+--+...... +..- |. .. +-++.+...........
T Consensus 292 RGwAWTrALLGl~AdEiH----LCGe-ps-vl------------------------------dlV~~i~k~TGd~vev~- 334 (700)
T KOG0953|consen 292 RGWAWTRALLGLAADEIH----LCGE-PS-VL------------------------------DLVRKILKMTGDDVEVR- 334 (700)
T ss_pred cchHHHHHHHhhhhhhhh----ccCC-ch-HH------------------------------HHHHHHHhhcCCeeEEE-
Confidence 776665544332221111 0000 00 00 01112221111000000
Q ss_pred ceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEE
Q psy10680 302 VSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVF 381 (537)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if 381 (537)
..+ ++..+... .....-+..-..-.| |.
T Consensus 335 ----~Ye-----------------Rl~pL~v~-----------~~~~~sl~nlk~GDC--------------------vV 362 (700)
T KOG0953|consen 335 ----EYE-----------------RLSPLVVE-----------ETALGSLSNLKPGDC--------------------VV 362 (700)
T ss_pred ----eec-----------------ccCcceeh-----------hhhhhhhccCCCCCe--------------------EE
Confidence 000 00000000 000001111112244 88
Q ss_pred EeeccCccccccccccccc-cccccccCCCCHHHHHHHHHHHhc--CCCcEEEEecccccCCCcCCccEEEEecCC----
Q psy10680 382 MEINHNGTETKHYGVSSSL-YRAMGIHGDKSQWNRDQTLRDFRS--GYINVLIASDVASRGLDVEDIKYVVNYDFP---- 454 (537)
Q Consensus 382 ~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~--g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p---- 454 (537)
|.+++..-.+ ...+...+ .++..+.|+++++.|.+--..|.+ ++++|||||+++++|+|+ +++-||+++.-
T Consensus 363 ~FSkk~I~~~-k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg 440 (700)
T KOG0953|consen 363 AFSKKDIFTV-KKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSG 440 (700)
T ss_pred EeehhhHHHH-HHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCc
Confidence 8888887777 44444444 458899999999999999999987 889999999999999999 89999988843
Q ss_pred -----CChhhhHhhhhcccCCCC
Q psy10680 455 -----DNTENYVHRIGRTARSTK 472 (537)
Q Consensus 455 -----~s~~~~~Q~~GRagR~~~ 472 (537)
.+.....|.+|||||.|-
T Consensus 441 ~e~~~it~sqikQIAGRAGRf~s 463 (700)
T KOG0953|consen 441 RETEDITVSQIKQIAGRAGRFGS 463 (700)
T ss_pred ccceeccHHHHHHHhhccccccc
Confidence 467788999999999864
No 126
>KOG1123|consensus
Probab=99.62 E-value=2.6e-15 Score=147.03 Aligned_cols=321 Identities=18% Similarity=0.161 Sum_probs=184.0
Q ss_pred CCCChhhhhhhhccccC---CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 44 GKPTSIQAQSWPICLSG---RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~~---~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
..++|||..++..+..+ ++-||+.|.|+|||++ -+.+...+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLV------------------------------------GvTAa~ti 344 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLV------------------------------------GVTAACTI 344 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCcee------------------------------------eeeeeeee
Confidence 47899999999888754 5899999999999998 33333443
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcC-
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESG- 199 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~- 199 (537)
...+|+|+.+.--++||.+.++.+..--+-.++..+.+... ....++.|+|+|...+..--++.
T Consensus 345 ----------kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~ 409 (776)
T KOG1123|consen 345 ----------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSH 409 (776)
T ss_pred ----------cccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccH
Confidence 33489999999999999999998875444444444443322 12247889999997765422211
Q ss_pred -------cccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchhHHHHhhhCCcccccceeeecc
Q psy10680 200 -------TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLD 272 (537)
Q Consensus 200 -------~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~ 272 (537)
.+.-....++++||+|.+...-|+..+.-+-.... . .++||--+--+-+.. +.++...
T Consensus 410 eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHcK----L----GLTATLvREDdKI~D-------LNFLIGP 474 (776)
T KOG1123|consen 410 EAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHCK----L----GLTATLVREDDKITD-------LNFLIGP 474 (776)
T ss_pred HHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHhh----c----cceeEEeeccccccc-------cceeecc
Confidence 11235688999999999765433333333222222 2 667773221111111 1111000
Q ss_pred chhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhh-HHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHh
Q psy10680 273 EADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISER-RDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351 (537)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (537)
.. ++-.+..+...-.. ..+.+.-.++.. .+-...++.. ..++-.
T Consensus 475 Kl-------YEAnWmdL~~kGhI--A~VqCaEVWCpMt~eFy~eYL~~--------------------------~t~kr~ 519 (776)
T KOG1123|consen 475 KL-------YEANWMDLQKKGHI--AKVQCAEVWCPMTPEFYREYLRE--------------------------NTRKRM 519 (776)
T ss_pred hh-------hhccHHHHHhCCce--eEEeeeeeecCCCHHHHHHHHhh--------------------------hhhhhh
Confidence 00 01122222111000 000000001111 1111111110 000000
Q ss_pred hhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhc-CCCcEE
Q psy10680 352 QMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRS-GYINVL 430 (537)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~iL 430 (537)
...-.|........+.+.+....+.+-|||.+..-...+. +-.+. . -.+.|..++.+|.++++.|+- ..++-|
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~Y-Aikl~---K--pfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEY-AIKLG---K--PFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHH-HHHcC---C--ceEECCCchhHHHHHHHhcccCCccceE
Confidence 0011111222223455556666788888887655333222 22222 2 237899999999999999984 568889
Q ss_pred EEecccccCCCcCCccEEEEecCC-CChhhhHhhhhcccCCC
Q psy10680 431 IASDVASRGLDVEDIKYVVNYDFP-DNTENYVHRIGRTARST 471 (537)
Q Consensus 431 vaT~~l~~Gidi~~~~~Vi~~d~p-~s~~~~~Q~~GRagR~~ 471 (537)
.-+.+....+|+|.++++|+.+.- .|-..=.||.||..|+.
T Consensus 594 FlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred EEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 999999999999999999988754 57778889999887753
No 127
>KOG4150|consensus
Probab=99.61 E-value=8.5e-16 Score=152.33 Aligned_cols=386 Identities=13% Similarity=0.083 Sum_probs=219.2
Q ss_pred hcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchh
Q psy10680 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYIL 114 (537)
Q Consensus 35 ~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (537)
..++..+.-.....+|.+++..+.+|+++++.-.|.+||+++ |.+
T Consensus 276 ~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~-----------------------------------~~~ 320 (1034)
T KOG4150|consen 276 RSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTC-----------------------------------PTS 320 (1034)
T ss_pred HHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccC-----------------------------------ccc
Confidence 333333333467789999999999999999999999999999 555
Q ss_pred hHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc---eeeEEEEEcCcchhHhHHHhccCCcEEEeCCch
Q psy10680 115 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM---RIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191 (537)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~ 191 (537)
.........+ ....+++.|+.+++....+.+....... .--++-.+.+.+.-....-.+.+.+++.+.|..
T Consensus 321 ~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~ 394 (1034)
T KOG4150|consen 321 GSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAE 394 (1034)
T ss_pred chhhhhhcCc------ccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHH
Confidence 5555444332 2236778888888776655443222211 111222233333333334445678999999988
Q ss_pred hHHHHhcC----cccccceeEEEecchhhhhhCC---ChHHHHHHHhhccccccccCCceeecC-----chhHHHHhhhC
Q psy10680 192 LIDFLESG----TTNVNRITYLVLDEADRMLDMG---FEPQIRKIIQMTRTRDLCRGAEIVVAT-----PGRLIDFLESG 259 (537)
Q Consensus 192 l~~~l~~~----~~~~~~l~liV~DE~h~~~~~~---~~~~l~~il~~~~~~~~~~~~~~~saT-----p~~~~~~l~~~ 259 (537)
.....-.+ ...+-...+++.||+|.+.... ....++.+++.+.......+..+.+.. |.+....
T Consensus 395 ~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~---- 470 (1034)
T KOG4150|consen 395 AISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSE---- 470 (1034)
T ss_pred HHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHH----
Confidence 76543221 1234456789999999865431 234555555555554444555566544 2222222
Q ss_pred CcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhh
Q psy10680 260 TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRML 339 (537)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (537)
...++.+..+..|....-. +. ...=+.+..|.+. ..+...+.+.
T Consensus 471 ~~~~~E~~Li~~DGSPs~~---------K~--~V~WNP~~~P~~~--~~~~~~i~E~----------------------- 514 (1034)
T KOG4150|consen 471 LANLSELELVTIDGSPSSE---------KL--FVLWNPSAPPTSK--SEKSSKVVEV----------------------- 514 (1034)
T ss_pred hcCCcceEEEEecCCCCcc---------ce--EEEeCCCCCCcch--hhhhhHHHHH-----------------------
Confidence 2333334443333221000 00 0000000000000 0000000000
Q ss_pred cCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccc---cccccccc----ccccccCCCCH
Q psy10680 340 DMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKH---YGVSSSLY----RAMGIHGDKSQ 412 (537)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~---~~l~~~~~----~~~~~~~~~~~ 412 (537)
-..+......+.+.|.||-.++.++.+.+ ..+.+.+. .+..+-||-+.
T Consensus 515 -------------------------s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A 569 (1034)
T KOG4150|consen 515 -------------------------SHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIA 569 (1034)
T ss_pred -------------------------HHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccch
Confidence 00011112234455577777766655421 11222222 34457799999
Q ss_pred HHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCc--chHHH
Q psy10680 413 WNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNG--NKAQD 490 (537)
Q Consensus 413 ~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~--~~~~~ 490 (537)
++|+.++.++--|+..-+|||++++-|||+..++.|++.++|.|...+.|..|||||.++...++.+...... -.+..
T Consensus 570 ~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~H 649 (1034)
T KOG4150|consen 570 EDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSH 649 (1034)
T ss_pred hhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999998776655544321 11111
Q ss_pred HHHHHHHcc----------ccccHHHHHHHhcCCCCChhhhhhHhhhh
Q psy10680 491 LIDILNEAH----------QFVPDRLLLLAAKNKPITTRQWKREYWRR 528 (537)
Q Consensus 491 ~~~~l~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 528 (537)
=..++...+ ..+..+| ++++.+.+++-++ .++||+.
T Consensus 650 P~~l~~~pN~EL~LD~~N~~iL~~Hl-QCAA~ELPIN~~~-D~q~Fg~ 695 (1034)
T KOG4150|consen 650 PDKLFGSPNEELHLDSQNKHVLMQHL-QCAALELPINLQY-DQQHFGS 695 (1034)
T ss_pred cHHHhCCCcceeEEecccHHHHHHHH-hHHhhcCccccch-hhhhccc
Confidence 111222111 1123333 3777777777644 5566654
No 128
>KOG0389|consensus
Probab=99.60 E-value=3e-14 Score=146.86 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=92.9
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCC--CcEEEEecccccCCCcCCccEEEE
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGY--INVLIASDVASRGLDVEDIKYVVN 450 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~iLvaT~~l~~Gidi~~~~~Vi~ 450 (537)
..|.+..+|.........+ ...|...++....+.|...-.+|+.+++.|...+ .-+|++|.+.+.|||+..+++||.
T Consensus 775 ~~G~RVLiFSQFTqmLDIL-E~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 775 KKGDRVLIFSQFTQMLDIL-EVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred hcCCEEEEeeHHHHHHHHH-HHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE
Confidence 4556666777777666666 8999999999999999999999999999997654 357889999999999999999999
Q ss_pred ecCCCChhhhHhhhhcccCCCCCce--eEEEecCC
Q psy10680 451 YDFPDNTENYVHRIGRTARSTKTGI--SYTLFTPL 483 (537)
Q Consensus 451 ~d~p~s~~~~~Q~~GRagR~~~~g~--~~~l~~~~ 483 (537)
+|..-+|-+=.|.--||.|+|+..- ++-+++..
T Consensus 854 hD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 854 HDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred eecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 9999999999999999999998653 44555543
No 129
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=5e-14 Score=147.32 Aligned_cols=135 Identities=18% Similarity=0.161 Sum_probs=105.7
Q ss_pred cccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhh
Q psy10680 36 GLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILP 115 (537)
Q Consensus 36 ~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (537)
+..+..|+ .|++.|.-..-.+..| -|..+.||.|||++ ..+|
T Consensus 70 a~~R~lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLv-----------------------------------A~l~ 111 (764)
T PRK12326 70 AAERTLGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLA-----------------------------------GAIA 111 (764)
T ss_pred HHHHHcCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHH-----------------------------------HHHH
Confidence 33345677 9999999999888876 57899999999999 6777
Q ss_pred HhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHH-
Q psy10680 116 ALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLID- 194 (537)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~- 194 (537)
++...+. |..+-+++|+.-|+.+-++++..+...+|+++..+.++.+..+.... ..+||+.+|...|--
T Consensus 112 a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFD 181 (764)
T PRK12326 112 AAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAA--YACDVTYASVNEIGFD 181 (764)
T ss_pred HHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccc
Confidence 7665554 55689999999999999999999999999999999888776544333 478999999987642
Q ss_pred HHhcC------cccccceeEEEecchhhhh
Q psy10680 195 FLESG------TTNVNRITYLVLDEADRML 218 (537)
Q Consensus 195 ~l~~~------~~~~~~l~liV~DE~h~~~ 218 (537)
.|... ......+.+.|+||+|.++
T Consensus 182 yLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 182 VLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred cchhhhccChHhhcCCccceeeecchhhhe
Confidence 33221 1234668999999999865
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1.5e-14 Score=154.91 Aligned_cols=131 Identities=19% Similarity=0.190 Sum_probs=101.3
Q ss_pred cCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHh
Q psy10680 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYH 119 (537)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 119 (537)
..|+ .|+++|.-.--.+. ..-|..+.||.|||++ ..+|++..
T Consensus 78 ~lGm-~~ydVQliGg~~Lh--~G~iaEM~TGEGKTLv-----------------------------------A~l~a~l~ 119 (913)
T PRK13103 78 VMGM-RHFDVQLIGGMTLH--EGKIAEMRTGEGKTLV-----------------------------------GTLAVYLN 119 (913)
T ss_pred HhCC-CcchhHHHhhhHhc--cCccccccCCCCChHH-----------------------------------HHHHHHHH
Confidence 4565 88888876654444 5689999999999999 77777665
Q ss_pred hhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchh-HHHHhc
Q psy10680 120 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRL-IDFLES 198 (537)
Q Consensus 120 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~ 198 (537)
.+. |..+-+++||.-|+.+-+.++..++..+|+++.++.++.+..+.... ..++|++||...| ++.|..
T Consensus 120 al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~--Y~~dI~YGT~~e~gFDYLrD 189 (913)
T PRK13103 120 ALS--------GKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAA--YAADITYGTNNEFGFDYLRD 189 (913)
T ss_pred HHc--------CCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHH--hcCCEEEEcccccccchhhc
Confidence 554 55689999999999999999999999999999999888776654433 3589999999886 222322
Q ss_pred C------cccccceeEEEecchhhhh
Q psy10680 199 G------TTNVNRITYLVLDEADRML 218 (537)
Q Consensus 199 ~------~~~~~~l~liV~DE~h~~~ 218 (537)
. ......+.++||||+|.++
T Consensus 190 ~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 190 NMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred cceechhhhcccccceeEechhhhee
Confidence 2 1124789999999999975
No 131
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.58 E-value=3.8e-14 Score=123.21 Aligned_cols=143 Identities=40% Similarity=0.570 Sum_probs=101.1
Q ss_pred CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEccc
Q psy10680 61 RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPT 140 (537)
Q Consensus 61 ~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 140 (537)
+++++.+|||+|||.+ ++..+....... ..++++|++|+
T Consensus 1 ~~~~i~~~~G~GKT~~-----------------------------------~~~~~~~~~~~~------~~~~~lv~~p~ 39 (144)
T cd00046 1 RDVLLAAPTGSGKTLA-----------------------------------ALLPILELLDSL------KGGQVLVLAPT 39 (144)
T ss_pred CCEEEECCCCCchhHH-----------------------------------HHHHHHHHHhcc------cCCCEEEEcCc
Confidence 4689999999999998 444444443321 24569999999
Q ss_pred HHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhC
Q psy10680 141 RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDM 220 (537)
Q Consensus 141 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~ 220 (537)
..++.|+...+...... +..+..+.++..............+|+++|++.+...+.........+++||+||+|.+...
T Consensus 40 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~ 118 (144)
T cd00046 40 RELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ 118 (144)
T ss_pred HHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhc
Confidence 99999999998877654 56667777766655555555678999999999998877665555678899999999999876
Q ss_pred CChHHHH-HHHhhccccccccCCceeecCc
Q psy10680 221 GFEPQIR-KIIQMTRTRDLCRGAEIVVATP 249 (537)
Q Consensus 221 ~~~~~l~-~il~~~~~~~~~~~~~~~saTp 249 (537)
....... ............ ++||||
T Consensus 119 ~~~~~~~~~~~~~~~~~~~i----~~saTp 144 (144)
T cd00046 119 GFGLLGLKILLKLPKDRQVL----LLSATP 144 (144)
T ss_pred chHHHHHHHHhhCCccceEE----EEeccC
Confidence 5444321 112222223333 778886
No 132
>KOG0924|consensus
Probab=99.56 E-value=1.2e-14 Score=147.11 Aligned_cols=83 Identities=22% Similarity=0.410 Sum_probs=72.6
Q ss_pred cccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecC------------------CCChhhh
Q psy10680 399 SLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF------------------PDNTENY 460 (537)
Q Consensus 399 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~------------------p~s~~~~ 460 (537)
.++.+..+.+.|+..-|.++......|..++||||++++..+.+|.+.+||..++ |-|-..-
T Consensus 596 ~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA 675 (1042)
T KOG0924|consen 596 TDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANA 675 (1042)
T ss_pred CceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccc
Confidence 3677888999999999999988888899999999999999999999999996552 4566777
Q ss_pred HhhhhcccCCCCCceeEEEecC
Q psy10680 461 VHRIGRTARSTKTGISYTLFTP 482 (537)
Q Consensus 461 ~Q~~GRagR~~~~g~~~~l~~~ 482 (537)
.||.|||||.| +|.|+-+++.
T Consensus 676 ~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 676 DQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred hhhccccCCCC-Ccceeeehhh
Confidence 89999999984 7899999887
No 133
>KOG0951|consensus
Probab=99.56 E-value=6.5e-14 Score=150.32 Aligned_cols=363 Identities=18% Similarity=0.198 Sum_probs=207.9
Q ss_pred eeeEEEEeeeecccceecCCcceeeehhhhhhcccc---cCCCCCCChhhhhhhhccccC-CcEEEEccCCCcccccccc
Q psy10680 4 SVSVRLVSLEARLPYFRSGYINVLIASDVASRGLGK---NSGYGKPTSIQAQSWPICLSG-RDLIGIAQTGSGKTLSLTI 79 (537)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~g~~~~~~~Q~~ai~~~~~~-~~vli~apTGsGKT~~~~~ 79 (537)
++++|.+.+|.++| +++.|-++.+-+... |.. ..=|....++|.+.++.+... +++++.+|+|||||.+
T Consensus 1103 Pvsfr~l~lpek~p--~pt~lld~~~~~~~~--l~N~~~~~lf~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~--- 1175 (1674)
T KOG0951|consen 1103 PVSFRHLILPEKYP--PPTELLDLQPLPVSA--LRNPSFETLFQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTAC--- 1175 (1674)
T ss_pred ccchhhccCcccCC--CCchhhhccccchhc--cCCcchhhhccccCCceEEEEeeeecccceEEEecCCCCchhHH---
Confidence 68999999999999 555555444433321 110 011234488999999887754 6999999999999998
Q ss_pred ccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHH-HHhcccc
Q psy10680 80 ENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI-SIFSRTM 158 (537)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~-~~~~~~~ 158 (537)
..++++. ..+..++++++|..+.+..+++.+ +++....
T Consensus 1176 --------------------------------ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1176 --------------------------------AELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred --------------------------------HHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 5555544 123567999999999998776554 4566667
Q ss_pred eeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhcccccc
Q psy10680 159 RIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDL 238 (537)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~ 238 (537)
|.+++.+.|....+. ++....+|+|+||+.+..+ . ..+.+++.|.||.|.+.+. ...+..+
T Consensus 1215 G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~--~g~v~ev--------- 1275 (1674)
T KOG0951|consen 1215 GLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV--YGAVYEV--------- 1275 (1674)
T ss_pred CceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc--CCceEEE---------
Confidence 888999988877653 3445689999999999876 2 6788999999999998742 1111111
Q ss_pred ccCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHh
Q psy10680 239 CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLE 318 (537)
Q Consensus 239 ~~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (537)
++| + ..+..++.+ . +....+.. ++. .....+... ...+..+-+
T Consensus 1276 -----i~S-~-r~ia~q~~k-~-----ir~v~ls~--~la------na~d~ig~s----------------~~~v~Nf~p 1318 (1674)
T KOG0951|consen 1276 -----ICS-M-RYIASQLEK-K-----IRVVALSS--SLA------NARDLIGAS----------------SSGVFNFSP 1318 (1674)
T ss_pred -----Eee-H-HHHHHHHHh-h-----eeEEEeeh--hhc------cchhhcccc----------------ccceeecCc
Confidence 111 1 111111111 0 00000000 000 000000000 000001111
Q ss_pred hccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccc
Q psy10680 319 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSS 398 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~ 398 (537)
........+.....+... ... ...+...-.+. .......+...++||+.+++.+... +..+-.
T Consensus 1319 ~~R~~Pl~i~i~~~~~~~------~~~---------~~~am~~~~~~-ai~~~a~~~k~~~vf~p~rk~~~~~-a~~~~~ 1381 (1674)
T KOG0951|consen 1319 SVRPVPLEIHIQSVDISH------FES---------RMLAMTKPTYT-AIVRHAGNRKPAIVFLPTRKHARLV-AVDLVT 1381 (1674)
T ss_pred ccCCCceeEEEEEeccch------hHH---------HHHHhhhhHHH-HHHHHhcCCCCeEEEeccchhhhhh-hhccch
Confidence 111111111100000000 000 00000000111 1112223556677888887777554 211111
Q ss_pred c----------------------ccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE-----e
Q psy10680 399 S----------------------LYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN-----Y 451 (537)
Q Consensus 399 ~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~-----~ 451 (537)
. ..+-..-|.++++.++..+...|..|.+.|+|.... ..|+-.. .+.|+. |
T Consensus 1382 ~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~-~~lVvvmgt~~y 1459 (1674)
T KOG0951|consen 1382 FSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLK-AHLVVVMGTQYY 1459 (1674)
T ss_pred hhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccccc-ceEEEEecceee
Confidence 0 011112388999999999999999999999999988 8999884 455553 4
Q ss_pred cC------CCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHH
Q psy10680 452 DF------PDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLI 492 (537)
Q Consensus 452 d~------p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~ 492 (537)
|. +-+..+..|+.|+|.|+ |.|++++...+...++++.
T Consensus 1460 dg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykkfl 1503 (1674)
T KOG0951|consen 1460 DGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKKFL 1503 (1674)
T ss_pred cccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHHhc
Confidence 42 34577889999999884 7999999998877666654
No 134
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.56 E-value=1.2e-14 Score=132.94 Aligned_cols=153 Identities=20% Similarity=0.182 Sum_probs=97.9
Q ss_pred CCChhhhhhhhcccc-------CCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHh
Q psy10680 45 KPTSIQAQSWPICLS-------GRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPAL 117 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~-------~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 117 (537)
.|+++|.+++..+.. .+++++.+|||+|||++ ++ .++
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~-----------------------------------~~-~~~ 46 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTII-----------------------------------AL-ALI 46 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHH-----------------------------------HH-HHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChh-----------------------------------hh-hhh
Confidence 689999999998884 58999999999999998 33 233
Q ss_pred HhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEE-----------cCcchhHhHHHhccCCcEEE
Q psy10680 118 YHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLY-----------GGTSKMYQTRDLCRGAEIVV 186 (537)
Q Consensus 118 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~Ivv 186 (537)
..+.. ++++++|+..|+.|+...+..+............ ..............+.++++
T Consensus 47 ~~l~~----------~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 116 (184)
T PF04851_consen 47 LELAR----------KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIIL 116 (184)
T ss_dssp HHHHC----------EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEE
T ss_pred hcccc----------ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchh
Confidence 33332 4999999999999999999665543221111100 00111111222245788999
Q ss_pred eCCchhHHHHhcC-----------cccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchh
Q psy10680 187 ATPGRLIDFLESG-----------TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGR 251 (537)
Q Consensus 187 ~Tp~~l~~~l~~~-----------~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~ 251 (537)
+|.+.+....... .......++||+||||++.... .+..++. ......+ .+||||.|
T Consensus 117 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~---~~~~i~~-~~~~~~l----~lTATp~r 184 (184)
T PF04851_consen 117 TTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDS---SYREIIE-FKAAFIL----GLTATPFR 184 (184)
T ss_dssp EEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHH---HHHHHHH-SSCCEEE----EEESS-S-
T ss_pred hHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHH---HHHHHHc-CCCCeEE----EEEeCccC
Confidence 9999998876431 1234678899999999986542 1444444 3333344 89999864
No 135
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.52 E-value=1.4e-14 Score=124.70 Aligned_cols=104 Identities=35% Similarity=0.573 Sum_probs=94.7
Q ss_pred CceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCC
Q psy10680 375 GIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFP 454 (537)
Q Consensus 375 ~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p 454 (537)
+.+.+|||.....++.+ ...+...+..+..+||+++..+|..+++.|+++...++++|+++++|+|+|.+++||+++.|
T Consensus 28 ~~~~lvf~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~ 106 (131)
T cd00079 28 GGKVLIFCPSKKMLDEL-AELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLP 106 (131)
T ss_pred CCcEEEEeCcHHHHHHH-HHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCC
Confidence 45567999999888888 67776677888899999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHhhhhcccCCCCCceeEEE
Q psy10680 455 DNTENYVHRIGRTARSTKTGISYTL 479 (537)
Q Consensus 455 ~s~~~~~Q~~GRagR~~~~g~~~~l 479 (537)
.+...|.|++||++|.|+.|.++++
T Consensus 107 ~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 107 WSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999998887653
No 136
>KOG0392|consensus
Probab=99.49 E-value=5.8e-13 Score=142.88 Aligned_cols=103 Identities=15% Similarity=0.191 Sum_probs=85.9
Q ss_pred hCceeEEEEeeccCccccccccccccccccc--cccCCCCHHHHHHHHHHHhcC-CCcEEE-EecccccCCCcCCccEEE
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLYRAM--GIHGDKSQWNRDQTLRDFRSG-YINVLI-ASDVASRGLDVEDIKYVV 449 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~~~~~r~~~~~~f~~g-~~~iLv-aT~~l~~Gidi~~~~~Vi 449 (537)
.+++..|||..+.....+...++......+. .+.|..++.+|.++.++|.++ .+++|+ +|.+.+-|+|+..++.||
T Consensus 1339 sqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVV 1418 (1549)
T KOG0392|consen 1339 SQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVV 1418 (1549)
T ss_pred ccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEE
Confidence 4567889999888877774444444444444 678999999999999999987 677665 668999999999999999
Q ss_pred EecCCCChhhhHhhhhcccCCCCCcee
Q psy10680 450 NYDFPDNTENYVHRIGRTARSTKTGIS 476 (537)
Q Consensus 450 ~~d~p~s~~~~~Q~~GRagR~~~~g~~ 476 (537)
+++-.++|..=+|.+-||.|-|++-.+
T Consensus 1419 FvEHDWNPMrDLQAMDRAHRIGQKrvV 1445 (1549)
T KOG0392|consen 1419 FVEHDWNPMRDLQAMDRAHRIGQKRVV 1445 (1549)
T ss_pred EEecCCCchhhHHHHHHHHhhcCceee
Confidence 999999999999999999999988543
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.48 E-value=4.4e-13 Score=147.93 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=77.2
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcC--CccEEEE
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVE--DIKYVVN 450 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~--~~~~Vi~ 450 (537)
..+.+.+|++.+.+..+.+ ...+....... ...|... .+..++++|++++..||++|+.+.+|||+| ....||.
T Consensus 645 ~~~g~~LVLFtS~~~l~~v-~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI 720 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAV-SDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVI 720 (820)
T ss_pred hcCCCEEEEECcHHHHHHH-HHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEE
Confidence 3456677888888777765 44443332333 2233222 245679999998889999999999999997 4566666
Q ss_pred ecCCC------------------------------ChhhhHhhhhcccCCCCCceeEEEecCC--CcchHHHHHHHHH
Q psy10680 451 YDFPD------------------------------NTENYVHRIGRTARSTKTGISYTLFTPL--NGNKAQDLIDILN 496 (537)
Q Consensus 451 ~d~p~------------------------------s~~~~~Q~~GRagR~~~~g~~~~l~~~~--~~~~~~~~~~~l~ 496 (537)
...|- -...+.|.+||.=|....--++++++++ ....-+.+.+.+.
T Consensus 721 ~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 721 TRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCC
Confidence 55441 1234689999999975432245677765 3444566666654
No 138
>KOG1000|consensus
Probab=99.48 E-value=7.8e-13 Score=129.83 Aligned_cols=360 Identities=12% Similarity=0.180 Sum_probs=197.5
Q ss_pred CCCChhhhhhhhc-cccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhc
Q psy10680 44 GKPTSIQAQSWPI-CLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILK 122 (537)
Q Consensus 44 ~~~~~~Q~~ai~~-~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 122 (537)
..+-|+|++-... +.+|...++...+|-|||.. .+.+......
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQ------------------------------------AlaIA~yyra 240 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQ------------------------------------ALAIARYYRA 240 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHH------------------------------------HHHHHHHHhh
Confidence 3567899998855 55778999999999999987 3344333333
Q ss_pred CCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCccc
Q psy10680 123 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTN 202 (537)
Q Consensus 123 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 202 (537)
. .| .||+||. .+-..|++.+..+++..-. +.++.++.+.- ..++....|.|.+.+.+...-. ...
T Consensus 241 E-------wp-lliVcPA-svrftWa~al~r~lps~~p-i~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~--~l~ 305 (689)
T KOG1000|consen 241 E-------WP-LLIVCPA-SVRFTWAKALNRFLPSIHP-IFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHD--ILK 305 (689)
T ss_pred c-------Cc-EEEEecH-HHhHHHHHHHHHhcccccc-eEEEecccCCc---cccccCCeEEEEEHHHHHHHHH--HHh
Confidence 2 22 6889998 5667788888887765432 44554443321 2233456788888877654322 223
Q ss_pred ccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCc-----hhHHHHhhhCCcccccceeeeccchhhh
Q psy10680 203 VNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATP-----GRLIDFLESGTTNVNRITYLVLDEADRM 277 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 277 (537)
-.+..+||+||+|++-+.. ......++..+.. ...+.++|.|| .++.-.+.. +....+...+++
T Consensus 306 ~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~---akhvILLSGTPavSRP~elytqi~a-------vd~tlfp~f~ef 374 (689)
T KOG1000|consen 306 KEKYRVVIFDESHMLKDSK-TKRTKAATDLLKV---AKHVILLSGTPAVSRPSELYTQIRA-------VDHTLFPNFHEF 374 (689)
T ss_pred cccceEEEEechhhhhccc-hhhhhhhhhHHHH---hhheEEecCCcccCCchhhhhhhhh-------hcccccccHHHH
Confidence 3458999999999986542 2223333333332 23344888885 222111111 111111110000
Q ss_pred -------------hcCC---ChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchh-----h
Q psy10680 278 -------------LDMG---FEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEA-----D 336 (537)
Q Consensus 278 -------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 336 (537)
.++. ....+..+.... .....-.. +++...+.- .+...+.+... +
T Consensus 375 a~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~----------lMIRRlK~---dvL~qLPpK-rr~Vv~~~~gr~da~~~ 440 (689)
T KOG1000|consen 375 AIRYCDGKQVRFCFDYKGCTNLEELAALLFKR----------LMIRRLKA---DVLKQLPPK-RREVVYVSGGRIDARMD 440 (689)
T ss_pred HHHhcCccccceeeecCCCCCHHHHHHHHHHH----------HHHHHHHH---HHHhhCCcc-ceEEEEEcCCccchHHH
Confidence 0000 000111111000 00000001 111111111 11111111110 0
Q ss_pred hhhcC--------CChhHHHHHhhhccccceeechhhHHHHH----HhHhCceeEEEEeeccCccccccccccccccccc
Q psy10680 337 RMLDM--------GFEPQIRKIIQMTRFNTCVFLGYVLYFWF----ILVAGIERWVFMEINHNGTETKHYGVSSSLYRAM 404 (537)
Q Consensus 337 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~ 404 (537)
.+... ..+......+...+.....+...+...+. ..+.+...++.+...+...+.....+.+.++...
T Consensus 441 ~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~I 520 (689)
T KOG1000|consen 441 DLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSI 520 (689)
T ss_pred HHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeE
Confidence 01100 01111111122222222333333333332 2455555555555555444444788888899999
Q ss_pred cccCCCCHHHHHHHHHHHhcC-CCc-EEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEE
Q psy10680 405 GIHGDKSQWNRDQTLRDFRSG-YIN-VLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTL 479 (537)
Q Consensus 405 ~~~~~~~~~~r~~~~~~f~~g-~~~-iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l 479 (537)
.+.|..++.+|....+.|+.. +.. -+++..+++.|+++.+...|++...++++--.+|.--|+.|.|++..+.+.
T Consensus 521 RIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 521 RIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred EecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEE
Confidence 999999999999999999854 344 345667889999999999999999999999999999999999998765433
No 139
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.47 E-value=6.4e-13 Score=142.15 Aligned_cols=304 Identities=13% Similarity=0.041 Sum_probs=162.1
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh---c-cCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL---C-RGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
|..+|||+|...|..|+...++..++ +..+..++.+.+..++...+ . ....|||||...++ ..+.++
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-------aP~~~L 258 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-------APVEDL 258 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-------eccCCC
Confidence 66799999999999999999997664 24678888887766554433 3 35799999997766 478999
Q ss_pred eEEEecchhhhhhCCC---h---HHHHHHHhhccccccccCCceeecCchhHHH-HhhhCCcc-c-----------ccce
Q psy10680 207 TYLVLDEADRMLDMGF---E---PQIRKIIQMTRTRDLCRGAEIVVATPGRLID-FLESGTTN-V-----------NRIT 267 (537)
Q Consensus 207 ~liV~DE~h~~~~~~~---~---~~l~~il~~~~~~~~~~~~~~~saTp~~~~~-~l~~~~~~-~-----------~~~~ 267 (537)
++||+||-|.-..+.- . ..+............+ +.||||+--.- ........ + ..+.
T Consensus 259 gLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lv----LgSaTPSles~~~~~~g~~~~~~~~~~~~~~~~P~v~ 334 (665)
T PRK14873 259 GLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALL----IGGHARTAEAQALVESGWAHDLVAPRPVVRARAPRVR 334 (665)
T ss_pred CEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEE----EECCCCCHHHHHHHhcCcceeeccccccccCCCCeEE
Confidence 9999999998654421 1 1222222222223333 66888653322 22221111 0 0011
Q ss_pred eeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhcc--cccc---ceeeeecchhhhhhcCC
Q psy10680 268 YLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGT--TNVN---RITYLVLDEADRMLDMG 342 (537)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~ 342 (537)
.+...+. ... .+..... ..+...-.+.+.+.++.+. -..+ ....+.|..+.....+.
T Consensus 335 ~vd~~~~-~~~----------------~~~~~~g-~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C~~Cg~~~~C~ 396 (665)
T PRK14873 335 ALGDSGL-ALE----------------RDPAARA-ARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLACARCRTPARCR 396 (665)
T ss_pred EEeCchh-hhc----------------ccccccc-CccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEhhhCcCeeECC
Confidence 1100000 000 0000000 0001112222222222221 0111 11344666777666666
Q ss_pred ChhHHHHHhhhccccceeechhhHHHHHHhHhCc-eeEEEEe--eccCccccccccccccccccccccCCCCHHHHHHHH
Q psy10680 343 FEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGI-ERWVFME--INHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTL 419 (537)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~if~~--~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~ 419 (537)
.+.....+....+.-.|..|++... ...++.+. ..+..+. +.+..+++ ...+.. .++..+ +++.++
T Consensus 397 ~C~~~L~~h~~~~~l~Ch~CG~~~~-p~~Cp~Cgs~~l~~~g~Gter~eeeL-~~~FP~--~~V~r~-------d~d~~l 465 (665)
T PRK14873 397 HCTGPLGLPSAGGTPRCRWCGRAAP-DWRCPRCGSDRLRAVVVGARRTAEEL-GRAFPG--VPVVTS-------GGDQVV 465 (665)
T ss_pred CCCCceeEecCCCeeECCCCcCCCc-CccCCCCcCCcceeeeccHHHHHHHH-HHHCCC--CCEEEE-------ChHHHH
Confidence 6665555544445556777766543 33333332 2233222 12222222 333322 222211 223578
Q ss_pred HHHhcCCCcEEEEec----ccccCCCcCCccEEEEecCCC------------ChhhhHhhhhcccCCCCCceeEEEecC
Q psy10680 420 RDFRSGYINVLIASD----VASRGLDVEDIKYVVNYDFPD------------NTENYVHRIGRTARSTKTGISYTLFTP 482 (537)
Q Consensus 420 ~~f~~g~~~iLvaT~----~l~~Gidi~~~~~Vi~~d~p~------------s~~~~~Q~~GRagR~~~~g~~~~l~~~ 482 (537)
+.|. ++.+|||+|. ++. +++++|+..|... ....+.|-+||+||.++.|.+++...+
T Consensus 466 ~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p 538 (665)
T PRK14873 466 DTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAES 538 (665)
T ss_pred Hhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCC
Confidence 8886 5999999999 555 3567777666431 244567889999999999999987533
No 140
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.47 E-value=7.7e-14 Score=109.24 Aligned_cols=78 Identities=37% Similarity=0.621 Sum_probs=72.8
Q ss_pred ccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCC
Q psy10680 394 YGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARST 471 (537)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~ 471 (537)
..+...++.+..+||+++..+|..+++.|+++...+||+|+++++|+|+|.++.||.+++|.+...|.|++||++|.|
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 5 ELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred HHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 344555788899999999999999999999999999999999999999999999999999999999999999999975
No 141
>KOG0926|consensus
Probab=99.44 E-value=2.7e-12 Score=132.56 Aligned_cols=82 Identities=22% Similarity=0.328 Sum_probs=68.3
Q ss_pred cccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecC--------CC----------ChhhhHh
Q psy10680 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF--------PD----------NTENYVH 462 (537)
Q Consensus 401 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~--------p~----------s~~~~~Q 462 (537)
.-+..+.+-++...|.++.+.-..|..-++|||++++..+.||++.+||..+. -. |-.+--|
T Consensus 605 LyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQ 684 (1172)
T KOG0926|consen 605 LYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQ 684 (1172)
T ss_pred eEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccch
Confidence 34667788899999999999888899999999999999999999999996553 22 3344469
Q ss_pred hhhcccCCCCCceeEEEecCC
Q psy10680 463 RIGRTARSTKTGISYTLFTPL 483 (537)
Q Consensus 463 ~~GRagR~~~~g~~~~l~~~~ 483 (537)
|+|||||.| .|+||-+++..
T Consensus 685 RAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 685 RAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred hccccCCCC-CCceeehhhhH
Confidence 999999985 78999998873
No 142
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=6.9e-12 Score=133.33 Aligned_cols=134 Identities=18% Similarity=0.212 Sum_probs=100.7
Q ss_pred ccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhH
Q psy10680 37 LGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPA 116 (537)
Q Consensus 37 l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (537)
..+..|+ .|++.|.-.--.+..| -|..+.||-|||++ ..+|+
T Consensus 71 ~~R~lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLv-----------------------------------AtLpa 112 (925)
T PRK12903 71 TKRVLGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTIT-----------------------------------SIAPV 112 (925)
T ss_pred HHHHhCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHH-----------------------------------HHHHH
Confidence 3345676 8999998877666654 58999999999999 77777
Q ss_pred hHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHH-H
Q psy10680 117 LYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLID-F 195 (537)
Q Consensus 117 l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~-~ 195 (537)
+-..+. |..+-|++.+.-|+.-=+.++..+...+|+.+++...+.+..+... ...+||+.||...|-- .
T Consensus 113 yLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDY 182 (925)
T PRK12903 113 YLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKRE--AYACDITYSVHSELGFDY 182 (925)
T ss_pred HHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHH--hccCCCeeecCcccchhh
Confidence 544433 4447888999999998888999888899999998887766554433 3468999999988743 4
Q ss_pred HhcCc------ccccceeEEEecchhhhh
Q psy10680 196 LESGT------TNVNRITYLVLDEADRML 218 (537)
Q Consensus 196 l~~~~------~~~~~l~liV~DE~h~~~ 218 (537)
|.... .....+.+.|+||+|.++
T Consensus 183 LRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 183 LRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred hhhcccccHHHhcCcccceeeeccchhee
Confidence 43321 234678899999999865
No 143
>KOG1002|consensus
Probab=99.35 E-value=3.3e-11 Score=118.40 Aligned_cols=145 Identities=12% Similarity=0.124 Sum_probs=106.0
Q ss_pred hccccceeechhhHHHHHHhH---hCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcC-CCc
Q psy10680 353 MTRFNTCVFLGYVLYFWFILV---AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSG-YIN 428 (537)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~ 428 (537)
+....+.-.+..+...+.... ...+.|||.........+ ...|.+.|+.++.+.|+|+...|...++.|++. .++
T Consensus 613 m~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi-~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~ 691 (791)
T KOG1002|consen 613 MDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLI-EWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCR 691 (791)
T ss_pred hhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHH-HHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeE
Confidence 334444445555544444333 334677777666655555 888999999999999999999999999999863 455
Q ss_pred -EEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCC--ceeEEEecCCCcchHHHHHHHHHHccc
Q psy10680 429 -VLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT--GISYTLFTPLNGNKAQDLIDILNEAHQ 500 (537)
Q Consensus 429 -iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~--g~~~~l~~~~~~~~~~~~~~~l~~~~~ 500 (537)
+|++-.+.+..+|+..++.|+.+|+-+++..-+|...|..|-|+. -.++.|+.+. ....+|+++-++..+
T Consensus 692 vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn--siE~kIieLQeKKa~ 764 (791)
T KOG1002|consen 692 VFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN--SIEEKIIELQEKKAN 764 (791)
T ss_pred EEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc--cHHHHHHHHHHHHhh
Confidence 455668888999999999999999999999999999999998874 4566666553 334566666655443
No 144
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.33 E-value=5.2e-11 Score=127.48 Aligned_cols=135 Identities=22% Similarity=0.244 Sum_probs=102.2
Q ss_pred cccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhh
Q psy10680 36 GLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILP 115 (537)
Q Consensus 36 ~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (537)
+..+..|+ .|++.|.-.--.+. ++-|..+.||.|||++ +.+|
T Consensus 68 a~~R~lG~-r~ydvQlig~l~L~--~G~IaEm~TGEGKTL~-----------------------------------a~l~ 109 (870)
T CHL00122 68 ASFRTLGL-RHFDVQLIGGLVLN--DGKIAEMKTGEGKTLV-----------------------------------ATLP 109 (870)
T ss_pred HHHHHhCC-CCCchHhhhhHhhc--CCccccccCCCCchHH-----------------------------------HHHH
Confidence 33345677 78899987765554 5689999999999999 7777
Q ss_pred HhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhH-H
Q psy10680 116 ALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLI-D 194 (537)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~-~ 194 (537)
++-..+. |..+-|++++..|+..-++++..+...+|+.+++..++.+..+... ...++|+.+|...|- +
T Consensus 110 ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFD 179 (870)
T CHL00122 110 AYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFD 179 (870)
T ss_pred HHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHH--hcCCCCEecCCcccccc
Confidence 7543332 4558899999999999999999999999999999888777655433 346899999997664 3
Q ss_pred HHhcCc------ccccceeEEEecchhhhh
Q psy10680 195 FLESGT------TNVNRITYLVLDEADRML 218 (537)
Q Consensus 195 ~l~~~~------~~~~~l~liV~DE~h~~~ 218 (537)
.|.... .....+.+.|+||+|.++
T Consensus 180 yLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 180 YLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred chhhccCcChHHhhccccceeeeecchhhe
Confidence 333221 134678999999999865
No 145
>KOG0925|consensus
Probab=99.32 E-value=1.1e-11 Score=121.63 Aligned_cols=181 Identities=16% Similarity=0.148 Sum_probs=106.0
Q ss_pred cCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccc
Q psy10680 21 SGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (537)
-+.|+....++-..+.|.+.... .-+..+.+-+..+..++-++++|.||||||.. +|=
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~L-Pvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq------------------- 81 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRREL-PVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQ------------------- 81 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcC-chHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcH-------------------
Confidence 45677777777777777543333 44556666677788888999999999999965 110
Q ss_pred ccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhcc
Q psy10680 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCR 180 (537)
Q Consensus 101 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 180 (537)
|+ +...... ...+...-|.+--+.+++++.. ..+++..+--.|..-..+.
T Consensus 82 -----------~~---~~~~~~~-------~~~v~CTQprrvaamsva~RVa---dEMDv~lG~EVGysIrfEd------ 131 (699)
T KOG0925|consen 82 -----------FV---LEYELSH-------LTGVACTQPRRVAAMSVAQRVA---DEMDVTLGEEVGYSIRFED------ 131 (699)
T ss_pred -----------HH---HHHHHhh-------ccceeecCchHHHHHHHHHHHH---HHhccccchhccccccccc------
Confidence 11 1111111 1226677888888888877766 3334443333332211111
Q ss_pred CCcEEEeCCchhHHHHhcC--------cccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC--ch
Q psy10680 181 GAEIVVATPGRLIDFLESG--------TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT--PG 250 (537)
Q Consensus 181 ~~~Ivv~Tp~~l~~~l~~~--------~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT--p~ 250 (537)
.+||.+++.....+ ...+.+.++||+||||.=.- ..+.++.+++.....+..-+..++||| .+
T Consensus 132 -----C~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtl--ATDiLmGllk~v~~~rpdLk~vvmSatl~a~ 204 (699)
T KOG0925|consen 132 -----CTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTL--ATDILMGLLKEVVRNRPDLKLVVMSATLDAE 204 (699)
T ss_pred -----cCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhH--HHHHHHHHHHHHHhhCCCceEEEeecccchH
Confidence 34455554433221 23578899999999997211 224555555444333333444488999 67
Q ss_pred hHHHHhhhCC
Q psy10680 251 RLIDFLESGT 260 (537)
Q Consensus 251 ~~~~~l~~~~ 260 (537)
.+..++.+.+
T Consensus 205 Kfq~yf~n~P 214 (699)
T KOG0925|consen 205 KFQRYFGNAP 214 (699)
T ss_pred HHHHHhCCCC
Confidence 7777776643
No 146
>KOG4439|consensus
Probab=99.24 E-value=9.5e-11 Score=119.88 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=81.9
Q ss_pred eeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhc--CCCcEEE-EecccccCCCcCCccEEEEecC
Q psy10680 377 ERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRS--GYINVLI-ASDVASRGLDVEDIKYVVNYDF 453 (537)
Q Consensus 377 ~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~iLv-aT~~l~~Gidi~~~~~Vi~~d~ 453 (537)
...|.+........+....+...|.....+||....++|..+++.|.. |..+|++ +-...+.|+|+...+++|..|+
T Consensus 747 eK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl 826 (901)
T KOG4439|consen 747 EKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL 826 (901)
T ss_pred ceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec
Confidence 334444433333344477888889999999999999999999999963 5455554 5577889999999999999999
Q ss_pred CCChhhhHhhhhcccCCCCCceeEE
Q psy10680 454 PDNTENYVHRIGRTARSTKTGISYT 478 (537)
Q Consensus 454 p~s~~~~~Q~~GRagR~~~~g~~~~ 478 (537)
-+++.-=-|.+.|..|+|++..+++
T Consensus 827 HWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 827 HWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred ccCHHHHHHHHHHHHHhcccCceEE
Confidence 9999999999999999999876654
No 147
>KOG0386|consensus
Probab=99.20 E-value=7.8e-11 Score=124.91 Aligned_cols=117 Identities=14% Similarity=0.145 Sum_probs=91.8
Q ss_pred CceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCC---CcEEEEecccccCCCcCCccEEEEe
Q psy10680 375 GIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGY---INVLIASDVASRGLDVEDIKYVVNY 451 (537)
Q Consensus 375 ~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~iLvaT~~l~~Gidi~~~~~Vi~~ 451 (537)
++...+||...+-...+ ..+|.-.++....+.|.....+|...++.|.... ..+|.+|...+.|+|+..++.||.|
T Consensus 726 gHRVLlF~qMTrlmdim-EdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviif 804 (1157)
T KOG0386|consen 726 GHRVLLFSQMTRLMDIL-EDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIF 804 (1157)
T ss_pred CcchhhHHHHHHHHHHH-HHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEe
Confidence 34444666555555555 7778778888888999999999999999998643 4688899999999999999999999
Q ss_pred cCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHH
Q psy10680 452 DFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLI 492 (537)
Q Consensus 452 d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~ 492 (537)
|..+++..+.|+--||.|.|+...+-++.-..-......++
T Consensus 805 dsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il 845 (1157)
T KOG0386|consen 805 DSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKIL 845 (1157)
T ss_pred cCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHH
Confidence 99999999999999999999876665554443333333333
No 148
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=9.4e-10 Score=117.81 Aligned_cols=132 Identities=23% Similarity=0.244 Sum_probs=101.1
Q ss_pred ccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
+..|+ .|+++|.-.--.+. ..-|..+.||-|||++ ..+|++-
T Consensus 80 R~lG~-r~ydVQliGgl~Lh--~G~IAEM~TGEGKTL~-----------------------------------atlpayl 121 (939)
T PRK12902 80 RVLGM-RHFDVQLIGGMVLH--EGQIAEMKTGEGKTLV-----------------------------------ATLPSYL 121 (939)
T ss_pred HHhCC-CcchhHHHhhhhhc--CCceeeecCCCChhHH-----------------------------------HHHHHHH
Confidence 34566 88888877665554 4589999999999999 7777765
Q ss_pred hhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhH-HHHh
Q psy10680 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLI-DFLE 197 (537)
Q Consensus 119 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~-~~l~ 197 (537)
..+. |..+-||+++.-|+..=++++..+...+|+.++++.++.+..+. +....+||+.||+..|- +.|.
T Consensus 122 nAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLR 191 (939)
T PRK12902 122 NALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLR 191 (939)
T ss_pred Hhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHH--HHhcCCCeEEecCCcccccchh
Confidence 5544 44588999999999999999999999999999998877665543 34468999999998872 2221
Q ss_pred ------cCcccccceeEEEecchhhhh
Q psy10680 198 ------SGTTNVNRITYLVLDEADRML 218 (537)
Q Consensus 198 ------~~~~~~~~l~liV~DE~h~~~ 218 (537)
........+.+.|+||+|.++
T Consensus 192 Dnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 192 DNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred hhhcccccccccCccceEEEeccccee
Confidence 122345778999999999865
No 149
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.12 E-value=2.7e-10 Score=112.76 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=86.3
Q ss_pred cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEc
Q psy10680 59 SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLA 138 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 138 (537)
..++.+++..+|+|||.. .+.++..+....+.. ....+||||
T Consensus 24 ~~~g~lL~de~GlGKT~~------------------------------------~i~~~~~l~~~~~~~--~~~~~LIv~ 65 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTIT------------------------------------AIALISYLKNEFPQR--GEKKTLIVV 65 (299)
T ss_dssp TT-EEEE---TTSSHHHH------------------------------------HHHHHHHHHHCCTTS--S-S-EEEEE
T ss_pred CCCCEEEEECCCCCchhh------------------------------------hhhhhhhhhhccccc--cccceeEee
Confidence 446899999999999987 444444444332211 012389999
Q ss_pred ccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHh---cCcccccceeEEEecchh
Q psy10680 139 PTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLE---SGTTNVNRITYLVLDEAD 215 (537)
Q Consensus 139 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~---~~~~~~~~l~liV~DE~h 215 (537)
|. .+..||..++..+......++..+.|...............+++|+|.+.+..... ...+...++++||+||+|
T Consensus 66 P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH 144 (299)
T PF00176_consen 66 PS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAH 144 (299)
T ss_dssp -T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGG
T ss_pred cc-chhhhhhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccc
Confidence 99 88899999999888654567777766652222222233568899999998881110 001122458999999999
Q ss_pred hhhhCCChHHHHHHHhhccccccccCCceeecCc
Q psy10680 216 RMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATP 249 (537)
Q Consensus 216 ~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp 249 (537)
.+.+ ........+..+...... ++|+||
T Consensus 145 ~~k~--~~s~~~~~l~~l~~~~~~----lLSgTP 172 (299)
T PF00176_consen 145 RLKN--KDSKRYKALRKLRARYRW----LLSGTP 172 (299)
T ss_dssp GGTT--TTSHHHHHHHCCCECEEE----EE-SS-
T ss_pred cccc--ccccccccccccccceEE----eecccc
Confidence 9943 334444555445555555 899996
No 150
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.12 E-value=7.4e-10 Score=120.34 Aligned_cols=90 Identities=13% Similarity=0.160 Sum_probs=62.4
Q ss_pred EEEeeccCcccccccccc-----ccccccccccCCCCHHHHHHHHHHH----------------------hc----CCCc
Q psy10680 380 VFMEINHNGTETKHYGVS-----SSLYRAMGIHGDKSQWNRDQTLRDF----------------------RS----GYIN 428 (537)
Q Consensus 380 if~~~~~~~~~l~~~~l~-----~~~~~~~~~~~~~~~~~r~~~~~~f----------------------~~----g~~~ 428 (537)
|-+++...+..+...++. ...+..+.+|+......|..+++.+ +. +...
T Consensus 761 iR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~ 840 (1110)
T TIGR02562 761 IRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLF 840 (1110)
T ss_pred EEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCe
Confidence 555555555444222221 1235677889998877776655443 12 4568
Q ss_pred EEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCC
Q psy10680 429 VLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTK 472 (537)
Q Consensus 429 iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~ 472 (537)
|+|+|++++.|+|+ +++.+|. -|.+..+.+|++||+.|.+.
T Consensus 841 i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 841 IVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred EEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 99999999999999 6777765 45668999999999999765
No 151
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.11 E-value=1.1e-09 Score=120.15 Aligned_cols=72 Identities=28% Similarity=0.271 Sum_probs=58.1
Q ss_pred cCCCCCCChhhhhhhhccc----cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhh
Q psy10680 40 NSGYGKPTSIQAQSWPICL----SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILP 115 (537)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~~~----~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (537)
.+....|++.|.+.+..+. .++.+++.||||+|||++ |++|
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~-----------------------------------yL~~ 54 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLA-----------------------------------YLLP 54 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHH-----------------------------------HHHH
Confidence 3555699999999985544 455699999999999999 8888
Q ss_pred HhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHH
Q psy10680 116 ALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 153 (537)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 153 (537)
++...... +.+++|.++|+.|..|..+....
T Consensus 55 al~~~~~~-------~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 55 ALAYAREE-------GKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred HHHHHHHc-------CCcEEEECCCHHHHHHHHHhhcc
Confidence 88876554 35699999999999998877654
No 152
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.10 E-value=3.9e-10 Score=119.47 Aligned_cols=107 Identities=17% Similarity=0.114 Sum_probs=69.0
Q ss_pred hCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhc----CCCcEEEEecccccCCCc-------
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRS----GYINVLIASDVASRGLDV------- 442 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~iLvaT~~l~~Gidi------- 442 (537)
.+...+|.+.+....... ...+.......+.+.|..+ .+...+++|+. |...||++|+.+.+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~-~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAI-GQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred cCCCEEEEechHHHHHHH-HHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 445667777777666666 4444332212223445332 34567888887 478999999999999999
Q ss_pred ---CCccEEEEecCCC-------------------------ChhhhHhhhhcccCCCCC--ceeEEEecCC
Q psy10680 443 ---EDIKYVVNYDFPD-------------------------NTENYVHRIGRTARSTKT--GISYTLFTPL 483 (537)
Q Consensus 443 ---~~~~~Vi~~d~p~-------------------------s~~~~~Q~~GRagR~~~~--g~~~~l~~~~ 483 (537)
..+++||+...|- ....+.|-+||.=|.... --.+.+++++
T Consensus 546 ~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 546 DKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 3589999877651 123457888888887554 3345566665
No 153
>KOG0391|consensus
Probab=99.06 E-value=4.5e-09 Score=112.79 Aligned_cols=136 Identities=19% Similarity=0.205 Sum_probs=95.4
Q ss_pred CceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCC--CcEEEEecccccCCCcCCccEEEEec
Q psy10680 375 GIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGY--INVLIASDVASRGLDVEDIKYVVNYD 452 (537)
Q Consensus 375 ~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~iLvaT~~l~~Gidi~~~~~Vi~~d 452 (537)
+++..||........-+ ...|+.+|+-.+.+.|....++|+..+++|+... ..+|++|...+.|||+..++.||+||
T Consensus 1276 ghRvLIfTQMtkmLDVL-eqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVL-EQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred CceEEehhHHHHHHHHH-HHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec
Confidence 33444555444444444 6777778888888899999999999999998654 46788999999999999999999999
Q ss_pred CCCChhhhHhhhhcccCCCCCcee--EEEecCCCcchHHHHHHHHHHccccccHHHHHHHhcCCCCCh
Q psy10680 453 FPDNTENYVHRIGRTARSTKTGIS--YTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPITT 518 (537)
Q Consensus 453 ~p~s~~~~~Q~~GRagR~~~~g~~--~~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 518 (537)
..+++.-=.|.--|+.|-|+.-.+ |-|++.. ..... +|++.++ -..|.+++-+..+.|+
T Consensus 1355 sDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~--TIEen---iLkkanq--Kr~L~evaiqggdfTt 1415 (1958)
T KOG0391|consen 1355 SDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER--TIEEN---ILKKANQ--KRMLDEVAIQGGDFTT 1415 (1958)
T ss_pred CCCCchhhhHHHHHHHhhcCccceEEEEeeccc--hHHHH---HHhhhhH--HHHHHHHhhccCCccH
Confidence 999988777766666666665444 4444443 22233 3333222 2356677777777776
No 154
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.06 E-value=1.6e-09 Score=123.51 Aligned_cols=127 Identities=13% Similarity=0.132 Sum_probs=104.3
Q ss_pred HhHhCc--eeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcC--CCcEEEEecccccCCCcCCcc
Q psy10680 371 ILVAGI--ERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSG--YINVLIASDVASRGLDVEDIK 446 (537)
Q Consensus 371 ~~~~~~--~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~iLvaT~~l~~Gidi~~~~ 446 (537)
....+. +.++|.........+ ...+...++..+.++|+++...|..+++.|.++ ..-+++++.+.+.|+|+..++
T Consensus 705 ~~~~~~~~kvlifsq~t~~l~il-~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 705 LLEEGHYHKVLIFSQFTPVLDLL-EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred HHhhcccccEEEEeCcHHHHHHH-HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 444555 777888877777777 778877778889999999999999999999985 456777888999999999999
Q ss_pred EEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHHc
Q psy10680 447 YVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEA 498 (537)
Q Consensus 447 ~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~~ 498 (537)
.||++|+.+++....|...|+.|.|+...+.++--........++.+.....
T Consensus 784 ~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K 835 (866)
T COG0553 784 TVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKK 835 (866)
T ss_pred eEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999987776666655555556666655543
No 155
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.03 E-value=1.2e-09 Score=106.61 Aligned_cols=76 Identities=22% Similarity=0.168 Sum_probs=56.7
Q ss_pred CCCCCCChhhhh----hhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhH
Q psy10680 41 SGYGKPTSIQAQ----SWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPA 116 (537)
Q Consensus 41 ~g~~~~~~~Q~~----ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (537)
|.| .|++.|.+ ++..+..|.++++.+|||+|||++ +++|+
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~-----------------------------------~L~~a 48 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLS-----------------------------------LLCLT 48 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHH-----------------------------------HHHHH
Confidence 566 57999999 445556788999999999999999 77777
Q ss_pred hHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q psy10680 117 LYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 154 (537)
Q Consensus 117 l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 154 (537)
+..+...+.. ..+.+++|.++|..+..|....++..
T Consensus 49 l~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 49 LTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 7665543211 01346889999999988887777654
No 156
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.03 E-value=1.2e-09 Score=106.61 Aligned_cols=76 Identities=22% Similarity=0.168 Sum_probs=56.7
Q ss_pred CCCCCCChhhhh----hhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhH
Q psy10680 41 SGYGKPTSIQAQ----SWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPA 116 (537)
Q Consensus 41 ~g~~~~~~~Q~~----ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (537)
|.| .|++.|.+ ++..+..|.++++.+|||+|||++ +++|+
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~-----------------------------------~L~~a 48 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLS-----------------------------------LLCLT 48 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHH-----------------------------------HHHHH
Confidence 566 57999999 445556788999999999999999 77777
Q ss_pred hHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q psy10680 117 LYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 154 (537)
Q Consensus 117 l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 154 (537)
+..+...+.. ..+.+++|.++|..+..|....++..
T Consensus 49 l~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 49 LTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 7665543211 01346889999999988887777654
No 157
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.02 E-value=1.2e-09 Score=92.00 Aligned_cols=105 Identities=21% Similarity=0.207 Sum_probs=66.5
Q ss_pred cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEc
Q psy10680 59 SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLA 138 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 138 (537)
+|+-.++...||+|||.- .+..++...... +.++|+|.
T Consensus 3 kg~~~~~d~hpGaGKTr~-----------------------------------vlp~~~~~~i~~-------~~rvLvL~ 40 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRR-----------------------------------VLPEIVREAIKR-------RLRVLVLA 40 (148)
T ss_dssp TTEEEEEE--TTSSTTTT-----------------------------------HHHHHHHHHHHT-------T--EEEEE
T ss_pred CCceeEEecCCCCCCccc-----------------------------------ccHHHHHHHHHc-------cCeEEEec
Confidence 455678999999999986 333334433332 66799999
Q ss_pred ccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhh
Q psy10680 139 PTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRM 217 (537)
Q Consensus 139 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~ 217 (537)
||+.++.++.+.++.. .+++....-+ .....+..|-++|...+..++.. .....++++||+||||..
T Consensus 41 PTRvva~em~~aL~~~----~~~~~t~~~~-------~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 41 PTRVVAEEMYEALKGL----PVRFHTNARM-------RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT 107 (148)
T ss_dssp SSHHHHHHHHHHTTTS----SEEEESTTSS-----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--
T ss_pred ccHHHHHHHHHHHhcC----CcccCceeee-------ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC
Confidence 9999999999998633 2222211100 01124566889999998887765 455688999999999985
No 158
>KOG0388|consensus
Probab=98.99 E-value=6.5e-09 Score=106.55 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=79.4
Q ss_pred eeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCC-cEEEEecccccCCCcCCccEEEEecCCC
Q psy10680 377 ERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYI-NVLIASDVASRGLDVEDIKYVVNYDFPD 455 (537)
Q Consensus 377 ~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~-~iLvaT~~l~~Gidi~~~~~Vi~~d~p~ 455 (537)
+..+|+...+....+ ..++...++....+.|.....+|..+.++|....+ -+|++|.+.+-|||+.+++.||+||..+
T Consensus 1046 RvL~yfQMTkM~dl~-EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDW 1124 (1185)
T KOG0388|consen 1046 RVLMYFQMTKMIDLI-EDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDW 1124 (1185)
T ss_pred eEEehhHHHHHHHHH-HHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCC
Confidence 333444333333333 56666667777778899999999999999987554 5778999999999999999999999999
Q ss_pred ChhhhHhhhhcccCCCCCcee
Q psy10680 456 NTENYVHRIGRTARSTKTGIS 476 (537)
Q Consensus 456 s~~~~~Q~~GRagR~~~~g~~ 476 (537)
++..=.|...||.|-|+...+
T Consensus 1125 NPT~D~QAMDRAHRLGQTrdv 1145 (1185)
T KOG0388|consen 1125 NPTADQQAMDRAHRLGQTRDV 1145 (1185)
T ss_pred CcchhhHHHHHHHhccCccce
Confidence 999999999999999987543
No 159
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.92 E-value=6.4e-09 Score=117.27 Aligned_cols=122 Identities=12% Similarity=0.122 Sum_probs=79.9
Q ss_pred hCceeEEEEeeccCcccccccccccccc--ccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCC--ccEEE
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLY--RAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVED--IKYVV 449 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~--~~~Vi 449 (537)
.+...+|++.+......+ ...+..... ....+.-+++...|..+++.|+.++..||++|..+.+|||+|. +++||
T Consensus 751 ~~g~~LVLFtSy~~l~~v-~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~vi 829 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKT-YYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLV 829 (928)
T ss_pred CCCCEEEEECCHHHHHHH-HHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEE
Confidence 334667777777766655 333332111 1111222444445788999999988899999999999999996 57888
Q ss_pred EecCCC------------------------------ChhhhHhhhhcccCCCCCceeEEEecCC--CcchHHHHHHHHH
Q psy10680 450 NYDFPD------------------------------NTENYVHRIGRTARSTKTGISYTLFTPL--NGNKAQDLIDILN 496 (537)
Q Consensus 450 ~~d~p~------------------------------s~~~~~Q~~GRagR~~~~g~~~~l~~~~--~~~~~~~~~~~l~ 496 (537)
....|- ....+.|.+||.=|..+.--++++++++ ....-+.+.+.+.
T Consensus 830 I~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 830 IVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 777542 1223578899999976554456677775 4445566666654
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.81 E-value=3.2e-07 Score=92.85 Aligned_cols=117 Identities=13% Similarity=0.171 Sum_probs=95.0
Q ss_pred ceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEeccc--ccCCCcCCccEEEEecC
Q psy10680 376 IERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVA--SRGLDVEDIKYVVNYDF 453 (537)
Q Consensus 376 ~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l--~~Gidi~~~~~Vi~~d~ 453 (537)
....||+.+.-.-..+ ...+...++..+.+|.-.+..+-.+....|..|+.++|+.|.-+ -+-..+..+..||+|++
T Consensus 301 ~~~LIfIPSYfDfVRl-RN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~ 379 (442)
T PF06862_consen 301 SGTLIFIPSYFDFVRL-RNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGP 379 (442)
T ss_pred CcEEEEecchhhhHHH-HHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECC
Confidence 4455888888877777 77777888889999999999999999999999999999999755 37788999999999999
Q ss_pred CCChhhhHhhhhcccCCCC------CceeEEEecCCCcchHHHHHH
Q psy10680 454 PDNTENYVHRIGRTARSTK------TGISYTLFTPLNGNKAQDLID 493 (537)
Q Consensus 454 p~s~~~~~Q~~GRagR~~~------~g~~~~l~~~~~~~~~~~~~~ 493 (537)
|..+.-|...++..+.... ...|.++++.-|.-.+..+.-
T Consensus 380 P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 380 PENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred CCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 9998888777765444332 578999999988766555543
No 161
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=6.3e-08 Score=105.18 Aligned_cols=108 Identities=16% Similarity=0.063 Sum_probs=78.1
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCC-CcEEEEecccccCCCcC--------
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGY-INVLIASDVASRGLDVE-------- 443 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~iLvaT~~l~~Gidi~-------- 443 (537)
..+....|-+.+....+.+ +..|...|++-..+++.....+-..+- +.|. -.|-|||++++||-||.
T Consensus 626 ~~GrPVLVGT~SVe~SE~l-S~~L~~~gI~H~VLNAK~h~~EAeIVA---~AG~~GaVTIATNMAGRGTDIkLg~~V~e~ 701 (1112)
T PRK12901 626 EAGRPVLVGTTSVEISELL-SRMLKMRKIPHNVLNAKLHQKEAEIVA---EAGQPGTVTIATNMAGRGTDIKLSPEVKAA 701 (1112)
T ss_pred HCCCCEEEEeCcHHHHHHH-HHHHHHcCCcHHHhhccchhhHHHHHH---hcCCCCcEEEeccCcCCCcCcccchhhHHc
Confidence 3445555666666666666 888888777666666654333322222 2344 46999999999999985
Q ss_pred CccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 444 DIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 444 ~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
.=-+||-...+.|..--.|..||+||-|.+|.+..|++-.|
T Consensus 702 GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 702 GGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 22467777889999999999999999999999988887655
No 162
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.78 E-value=8.6e-08 Score=107.70 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=75.4
Q ss_pred CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEccc
Q psy10680 61 RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPT 140 (537)
Q Consensus 61 ~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 140 (537)
+..+|+-.||||||++ . +.+...+... ...++++|||-.
T Consensus 274 ~~G~IWHtqGSGKTlT-----------------------------------m-~~~A~~l~~~-----~~~~~v~fvvDR 312 (962)
T COG0610 274 KGGYIWHTQGSGKTLT-----------------------------------M-FKLARLLLEL-----PKNPKVLFVVDR 312 (962)
T ss_pred CceEEEeecCCchHHH-----------------------------------H-HHHHHHHHhc-----cCCCeEEEEech
Confidence 4799999999999988 2 2222233322 236789999999
Q ss_pred HHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhcc-CCcEEEeCCchhHHHHhcC--cccccceeEEEecchhhh
Q psy10680 141 RELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCR-GAEIVVATPGRLIDFLESG--TTNVNRITYLVLDEADRM 217 (537)
Q Consensus 141 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~--~~~~~~l~liV~DE~h~~ 217 (537)
++|-.|....++.+........ ...+..+....+.. ...|+|||-++|....... ...-.+=-+||+||||+-
T Consensus 313 ~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 313 KDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred HHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc
Confidence 9999999999998765432211 22222333333332 3589999999999887654 112222337899999995
Q ss_pred hh
Q psy10680 218 LD 219 (537)
Q Consensus 218 ~~ 219 (537)
-.
T Consensus 389 Q~ 390 (962)
T COG0610 389 QY 390 (962)
T ss_pred cc
Confidence 43
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.76 E-value=1.6e-07 Score=100.06 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=67.7
Q ss_pred HhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCc--cEE
Q psy10680 371 ILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDI--KYV 448 (537)
Q Consensus 371 ~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~--~~V 448 (537)
.+..|.+--+|+.+...++.+ +........++..++|.-+..+ +. . -++++|++-|+++..|+++.+. +-+
T Consensus 278 ~L~~gknIcvfsSt~~~~~~v-~~~~~~~~~~Vl~l~s~~~~~d---v~-~--W~~~~VviYT~~itvG~Sf~~~HF~~~ 350 (824)
T PF02399_consen 278 RLNAGKNICVFSSTVSFAEIV-ARFCARFTKKVLVLNSTDKLED---VE-S--WKKYDVVIYTPVITVGLSFEEKHFDSM 350 (824)
T ss_pred HHhCCCcEEEEeChHHHHHHH-HHHHHhcCCeEEEEcCCCCccc---cc-c--ccceeEEEEeceEEEEeccchhhceEE
Confidence 334444444677666555555 6666666777877777665552 21 1 4789999999999999998643 334
Q ss_pred EEecCC----CChhhhHhhhhcccCCCCCceeEEEecCC
Q psy10680 449 VNYDFP----DNTENYVHRIGRTARSTKTGISYTLFTPL 483 (537)
Q Consensus 449 i~~d~p----~s~~~~~Q~~GRagR~~~~g~~~~l~~~~ 483 (537)
+-|=.| .+..+..|++||+-.- .....+++++..
T Consensus 351 f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 351 FAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 444223 3456789999997443 345666677653
No 164
>KOG1015|consensus
Probab=98.63 E-value=1e-06 Score=93.54 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=69.7
Q ss_pred ccccccccCCCCHHHHHHHHHHHhcCC----CcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCce
Q psy10680 400 LYRAMGIHGDKSQWNRDQTLRDFRSGY----INVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGI 475 (537)
Q Consensus 400 ~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~ 475 (537)
|.....+.|......|....+.|.... .-+||+|.+.+-|||+-+++-||+||..|+|.-=.|.+=|+-|.|+..-
T Consensus 1188 GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKP 1267 (1567)
T KOG1015|consen 1188 GKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKP 1267 (1567)
T ss_pred CCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCc
Confidence 455666889999999999999998633 2489999999999999999999999999999999999999999999766
Q ss_pred eEEE
Q psy10680 476 SYTL 479 (537)
Q Consensus 476 ~~~l 479 (537)
||+|
T Consensus 1268 vyiY 1271 (1567)
T KOG1015|consen 1268 VYIY 1271 (1567)
T ss_pred eeeh
Confidence 6644
No 165
>KOG2340|consensus
Probab=98.63 E-value=1.1e-06 Score=88.08 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=82.7
Q ss_pred EEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEeccc--ccCCCcCCccEEEEecCCCC
Q psy10680 379 WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVA--SRGLDVEDIKYVVNYDFPDN 456 (537)
Q Consensus 379 ~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l--~~Gidi~~~~~Vi~~d~p~s 456 (537)
.||..+.-.-..+ ..++.+..+..+.+|.-.+...-.+..+.|-.|..++|+-|.-+ -+-.++..+..||+|.+|..
T Consensus 556 LiyIPSYfDFVRv-RNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~ 634 (698)
T KOG2340|consen 556 LIYIPSYFDFVRV-RNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNN 634 (698)
T ss_pred EEEecchhhHHHH-HHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCC
Confidence 4666665555555 55566666777778877777777788888999999999999765 47889999999999999998
Q ss_pred hhhh---HhhhhcccCCCC----CceeEEEecCCCcchHHHHH
Q psy10680 457 TENY---VHRIGRTARSTK----TGISYTLFTPLNGNKAQDLI 492 (537)
Q Consensus 457 ~~~~---~Q~~GRagR~~~----~g~~~~l~~~~~~~~~~~~~ 492 (537)
|.-| +.+.+|+.-.|+ ...|.++++.-|.-.+..+.
T Consensus 635 P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 635 PHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred cHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 7654 667777554442 35778888887765544443
No 166
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.61 E-value=1.7e-07 Score=89.12 Aligned_cols=132 Identities=23% Similarity=0.294 Sum_probs=96.5
Q ss_pred ccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
+..|+ .|++.|.-+.-.+..|+ |+.+.||=|||++ ..++++.
T Consensus 72 r~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli-----------------------------------~~l~a~~ 113 (266)
T PF07517_consen 72 RTLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLI-----------------------------------AALPAAL 113 (266)
T ss_dssp HHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHH-----------------------------------HHHHHHH
T ss_pred HHcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHH-----------------------------------HHHHHHH
Confidence 34666 99999999998876654 9999999999998 5666655
Q ss_pred hhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHH-HHh
Q psy10680 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLID-FLE 197 (537)
Q Consensus 119 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~-~l~ 197 (537)
..+. |..+=|++.+.-|+..=+.++..++..+|+.+...+++.+..++.. ...++|+.+|...+.- .|.
T Consensus 114 ~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~--~Y~~dI~Y~t~~~~~fD~Lr 183 (266)
T PF07517_consen 114 NALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERRE--AYAADIVYGTNSEFGFDYLR 183 (266)
T ss_dssp HHTT--------SS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHH--HHHSSEEEEEHHHHHHHHHH
T ss_pred HHHh--------cCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHH--HHhCcccccccchhhHHHHH
Confidence 5443 5558899999999999999999999999999999999887554332 2357899999988864 343
Q ss_pred cC----c--ccccceeEEEecchhhhh
Q psy10680 198 SG----T--TNVNRITYLVLDEADRML 218 (537)
Q Consensus 198 ~~----~--~~~~~l~liV~DE~h~~~ 218 (537)
.. . .....++++||||+|.++
T Consensus 184 d~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 184 DNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHhhccchhccCCCCEEEEeccceEE
Confidence 21 1 124788999999999875
No 167
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.58 E-value=2e-07 Score=102.08 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=72.4
Q ss_pred ceeEEEEeeccCcccccccccc-ccccccccccCCCCHHHHHHHHHHHhc----CCCcEEEEecccccCCCcCC--ccEE
Q psy10680 376 IERWVFMEINHNGTETKHYGVS-SSLYRAMGIHGDKSQWNRDQTLRDFRS----GYINVLIASDVASRGLDVED--IKYV 448 (537)
Q Consensus 376 ~~~~if~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~iLvaT~~l~~Gidi~~--~~~V 448 (537)
...+|++.+......+ ...+. ..+..+ ..+|.. .+..+++.|++ |+..||++|..+.+|||+|. +++|
T Consensus 535 gg~LVlFtSy~~l~~v-~~~l~~~~~~~l-l~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 535 KGSLVLFASRRQMQKV-ADLLPRDLRLML-LVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCEEEEeCcHHHHHHH-HHHHHHhcCCcE-EEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 3457888777777665 33332 222222 234532 45677777764 67789999999999999986 7889
Q ss_pred EEecCCC----C--------------------------hhhhHhhhhcccCCCCCceeEEEecCC--CcchHHHHHHHH
Q psy10680 449 VNYDFPD----N--------------------------TENYVHRIGRTARSTKTGISYTLFTPL--NGNKAQDLIDIL 495 (537)
Q Consensus 449 i~~d~p~----s--------------------------~~~~~Q~~GRagR~~~~g~~~~l~~~~--~~~~~~~~~~~l 495 (537)
|+...|- + ...+.|.+||.=|....--++++++++ ....-+.+++.+
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDAL 688 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhC
Confidence 9877552 1 123478889998875443345566665 333345555444
No 168
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=2.8e-07 Score=101.55 Aligned_cols=75 Identities=19% Similarity=0.097 Sum_probs=60.9
Q ss_pred cCCCCCCChhhhhhhhccc----cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhh
Q psy10680 40 NSGYGKPTSIQAQSWPICL----SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILP 115 (537)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~~~----~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (537)
.+.|..+++.|.+.+..+. .+.+.++.+|||+|||++ .+.|
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTls-----------------------------------lL~~ 49 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTIS-----------------------------------LLSL 49 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHH-----------------------------------HHHH
Confidence 3778778999999885544 678999999999999999 6777
Q ss_pred HhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q psy10680 116 ALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIF 154 (537)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 154 (537)
++......+ ..++++|.+.|..-..|..++++..
T Consensus 50 aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 50 ILAYQQEKP-----EVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred HHHHHHhcc-----ccccEEEEcccchHHHHHHHHHHhh
Confidence 777655432 1357999999999999999999874
No 169
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.47 E-value=4.1e-07 Score=86.35 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=50.6
Q ss_pred CChhhhhhhhccccCCc-EEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 46 PTSIQAQSWPICLSGRD-LIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 46 ~~~~Q~~ai~~~~~~~~-vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
+++.|.+|+..+++... .+|.||+|+|||.+ +..++..+....
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~------------------------------------l~~~i~~~~~~~ 45 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTT------------------------------------LASIIAQLLQRF 45 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHH------------------------------------HHHHHHHH----
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHH------------------------------------HHHHHHHhccch
Confidence 57889999999999888 99999999999965 344444442100
Q ss_pred -CCCCCCCceEEEEcccHHHHHHHHHHHHH
Q psy10680 125 -KLEEGDGPIALVLAPTRELAQQIQAVISI 153 (537)
Q Consensus 125 -~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 153 (537)
......+.++|+++|+..-+.++...+..
T Consensus 46 ~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 46 KSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred hhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 00112367799999999999999999886
No 170
>KOG0952|consensus
Probab=98.39 E-value=1.6e-07 Score=100.84 Aligned_cols=172 Identities=21% Similarity=0.189 Sum_probs=118.7
Q ss_pred eeeEEEEeeeecccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhcccc-CCcEEEEccCCCccccccccccc
Q psy10680 4 SVSVRLVSLEARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLS-GRDLIGIAQTGSGKTLSLTIENT 82 (537)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~-~~~vli~apTGsGKT~~~~~~~~ 82 (537)
+++++.+.++..-+..+...-....++..+...... .-++...+.|...+..+.. ..++++-+|||+|||.+
T Consensus 887 ~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e-~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~------ 959 (1230)
T KOG0952|consen 887 PLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFE-ALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVV------ 959 (1230)
T ss_pred cccccceeccccccccccccccCCCcchhhccccHH-HhhcccCCccceEEEEEeecchhhhhcCCccCcchhH------
Confidence 456666777766664444444444444433322211 1123455678888766554 35899999999999999
Q ss_pred hhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeE
Q psy10680 83 QVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRH 162 (537)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 162 (537)
+-+++...+...+ +.+++|++|-++|+..-.+.+.......|+++
T Consensus 960 -----------------------------ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ 1004 (1230)
T KOG0952|consen 960 -----------------------------AELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELPGIKV 1004 (1230)
T ss_pred -----------------------------HHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccCCcee
Confidence 5555555554433 57799999999999988777766555558889
Q ss_pred EEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHh--cCcccccceeEEEecchhhhhhC
Q psy10680 163 ACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLE--SGTTNVNRITYLVLDEADRMLDM 220 (537)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~--~~~~~~~~l~liV~DE~h~~~~~ 220 (537)
..+.|+...+.. -...++++|+||+++..... .....+.+++++|+||.|++.+.
T Consensus 1005 ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1005 IELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred EeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 999888776522 12478999999999987665 44557889999999999987654
No 171
>KOG1802|consensus
Probab=98.03 E-value=1.8e-05 Score=81.48 Aligned_cols=72 Identities=21% Similarity=0.211 Sum_probs=59.5
Q ss_pred cCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHh
Q psy10680 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYH 119 (537)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 119 (537)
..|+..++.-|..|..++++..-.||+||+|+|||.+ ...++.+
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvt------------------------------------sa~IVyh 448 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVT------------------------------------SATIVYH 448 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceeh------------------------------------hHHHHHH
Confidence 3677899999999999999999999999999999987 4445555
Q ss_pred hhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHH
Q psy10680 120 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI 153 (537)
Q Consensus 120 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 153 (537)
+.... ++.+|+.+|+.-=+.|.++.+.+
T Consensus 449 l~~~~------~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 449 LARQH------AGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred HHHhc------CCceEEEcccchhHHHHHHHHHh
Confidence 55432 55689999999999999988854
No 172
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.02 E-value=2.4e-05 Score=72.19 Aligned_cols=152 Identities=22% Similarity=0.247 Sum_probs=99.5
Q ss_pred CCcceeeehhhhhhcccccCCCCCCChhhhhhhhcccc---CCcEEEEccCCCccccccccccchhccccccCCCCCccc
Q psy10680 22 GYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLS---GRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98 (537)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~---~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 98 (537)
..|++...++++.-.+. .++ -.++.|.+....+.+ |+|.+.++-+|.|||.+
T Consensus 3 ~~w~p~~~P~wLl~E~e--~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV---------------------- 57 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE--SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV---------------------- 57 (229)
T ss_pred CCCCchhChHHHHHHHH--cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch----------------------
Confidence 35677777778777773 566 889999998877764 57999999999999987
Q ss_pred ccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhccc-ceeeEEEE--EcCcchh---
Q psy10680 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT-MRIRHACL--YGGTSKM--- 172 (537)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~--~~~~~~~--- 172 (537)
++|++..++.++ +..+.++||. +|..|..+.+..-.+. .+-++..+ .-.....
T Consensus 58 --------------I~Pmla~~LAdg------~~LvrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~ 116 (229)
T PF12340_consen 58 --------------IVPMLALALADG------SRLVRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPET 116 (229)
T ss_pred --------------HHHHHHHHHcCC------CcEEEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHH
Confidence 889998888764 2345666776 7999998888754432 22222222 2222211
Q ss_pred -HhHH----HhccCCcEEEeCCchhHHHHhc-------Ccc-----------cccceeEEEecchhhhhh
Q psy10680 173 -YQTR----DLCRGAEIVVATPGRLIDFLES-------GTT-----------NVNRITYLVLDEADRMLD 219 (537)
Q Consensus 173 -~~~~----~l~~~~~Ivv~Tp~~l~~~l~~-------~~~-----------~~~~l~liV~DE~h~~~~ 219 (537)
.... .......|+++||+.++.+.-. +.. .+.+-..=|+||+|..+.
T Consensus 117 ~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 117 LEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 1111 1224567999999998765311 110 123344568999998765
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.01 E-value=3.4e-05 Score=85.04 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=55.6
Q ss_pred CCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCC--Cc-------e-eEEEecCCCcchHHHHHHHH
Q psy10680 426 YINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTK--TG-------I-SYTLFTPLNGNKAQDLIDIL 495 (537)
Q Consensus 426 ~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~--~g-------~-~~~l~~~~~~~~~~~~~~~l 495 (537)
..++|++-+++.+|.|.|++=.+..+....|...-.|.+||..|.-. .| . --++.+.+..+.+..+....
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 57899999999999999999988889988999999999999998421 11 1 22344455666677777666
Q ss_pred HHc
Q psy10680 496 NEA 498 (537)
Q Consensus 496 ~~~ 498 (537)
+..
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 553
No 174
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.93 E-value=1.2e-05 Score=74.04 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=43.2
Q ss_pred CCChhhhhhhhccccCC--cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhc
Q psy10680 45 KPTSIQAQSWPICLSGR--DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILK 122 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~--~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 122 (537)
++++-|.+|+..++.+. -.++.||.|+|||.+ +-.+...+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~------------------------------------l~~~~~~~~~ 44 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL------------------------------------LKALAEALEA 44 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH------------------------------------HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH------------------------------------HHHHHHHHHh
Confidence 36789999999986543 477889999999965 2223333333
Q ss_pred CCCCCCCCCceEEEEcccHHHHHHHHHH
Q psy10680 123 MPKLEEGDGPIALVLAPTRELAQQIQAV 150 (537)
Q Consensus 123 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 150 (537)
. +.++++++||..-+....+.
T Consensus 45 ~-------g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 45 A-------GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp T-------T--EEEEESSHHHHHHHHHH
T ss_pred C-------CCeEEEECCcHHHHHHHHHh
Confidence 2 56699999999988886665
No 175
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.00033 Score=75.82 Aligned_cols=130 Identities=22% Similarity=0.251 Sum_probs=93.0
Q ss_pred CCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 41 ~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
.|+ .|..+|.-.- +.-..+-+.-+-||=|||++ ..+|+.-..
T Consensus 77 lg~-~~~dVQliG~--i~lh~g~iaEM~TGEGKTL~-----------------------------------atlp~ylna 118 (822)
T COG0653 77 LGM-RHFDVQLLGG--IVLHLGDIAEMRTGEGKTLV-----------------------------------ATLPAYLNA 118 (822)
T ss_pred cCC-ChhhHHHhhh--hhhcCCceeeeecCCchHHH-----------------------------------HHHHHHHHh
Confidence 444 6666665443 34445689999999999999 667765444
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhH-HHHhc-
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLI-DFLES- 198 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~-~~l~~- 198 (537)
+. |..+-++..+.-|+.--+.++..+...+|+.++....+.+..++... ..+||..+|-..|- +.|..
T Consensus 119 L~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDN 188 (822)
T COG0653 119 LA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDN 188 (822)
T ss_pred cC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHH--HhcCceeccccccCcchhhhh
Confidence 43 34478888899999888899998889999999999888876655443 46899999987763 11211
Q ss_pred -----CcccccceeEEEecchhhhh
Q psy10680 199 -----GTTNVNRITYLVLDEADRML 218 (537)
Q Consensus 199 -----~~~~~~~l~liV~DE~h~~~ 218 (537)
.......+.+.|+||++-++
T Consensus 189 m~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 189 MVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred hhccHHHhhhccCCeEEEcchhhee
Confidence 11133468899999999854
No 176
>KOG0921|consensus
Probab=97.88 E-value=2.8e-05 Score=82.65 Aligned_cols=81 Identities=17% Similarity=0.432 Sum_probs=65.6
Q ss_pred cccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecC------------------CCChhhhHh
Q psy10680 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF------------------PDNTENYVH 462 (537)
Q Consensus 401 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~------------------p~s~~~~~Q 462 (537)
+.....|+-....++.++.+....|..++|++|.+.+.-+.+.++..|+..+. -.+.....|
T Consensus 675 y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eq 754 (1282)
T KOG0921|consen 675 YEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQ 754 (1282)
T ss_pred cccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHh
Confidence 55667788888888888988888899999999999999999888777774331 245677899
Q ss_pred hhhcccCCCCCceeEEEecC
Q psy10680 463 RIGRTARSTKTGISYTLFTP 482 (537)
Q Consensus 463 ~~GRagR~~~~g~~~~l~~~ 482 (537)
+.||+||. +.|.|+.++..
T Consensus 755 r~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 755 RKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred hcccCcee-cccccccccHH
Confidence 99999997 67788777664
No 177
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.82 E-value=7.6e-05 Score=80.85 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=52.6
Q ss_pred CCCChhhhhhhhccccC-CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhc
Q psy10680 44 GKPTSIQAQSWPICLSG-RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILK 122 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~~-~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 122 (537)
..+++.|.+|+..++.. ..++|.||+|+|||.+ +..++..+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t------------------------------------~~~ii~~~~~ 199 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT------------------------------------LVELIRQLVK 199 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH------------------------------------HHHHHHHHHH
Confidence 36789999999888766 6789999999999976 3334444433
Q ss_pred CCCCCCCCCceEEEEcccHHHHHHHHHHHHH
Q psy10680 123 MPKLEEGDGPIALVLAPTRELAQQIQAVISI 153 (537)
Q Consensus 123 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 153 (537)
. |.++|+++||..-+.++.+.+..
T Consensus 200 ~-------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 200 R-------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred c-------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 2 45799999999999999888875
No 178
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.78 E-value=0.00092 Score=71.47 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=55.8
Q ss_pred CCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCC--CCCc-----------eeEEEecCCCcchHHHH
Q psy10680 425 GYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARS--TKTG-----------ISYTLFTPLNGNKAQDL 491 (537)
Q Consensus 425 g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~--~~~g-----------~~~~l~~~~~~~~~~~~ 491 (537)
...++|.+-.++-+|.|=|++-.+.-+....|..+=+|.+||..|- ++.| .-.+++..++...+..+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3478999999999999999999999999999999999999999982 2222 22345555666666666
Q ss_pred HHHHHH
Q psy10680 492 IDILNE 497 (537)
Q Consensus 492 ~~~l~~ 497 (537)
.+..+.
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 555544
No 179
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.76 E-value=0.00028 Score=77.80 Aligned_cols=53 Identities=23% Similarity=0.204 Sum_probs=44.1
Q ss_pred cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhh
Q psy10680 180 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 232 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~ 232 (537)
....|++.||+.+.+.+-.+.+++..++.|||||||++.+..-..-+-+++..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~ 58 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQ 58 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHH
Confidence 45789999999999999999999999999999999999876555555555543
No 180
>KOG1001|consensus
Probab=97.75 E-value=6.7e-05 Score=80.70 Aligned_cols=101 Identities=15% Similarity=0.088 Sum_probs=80.7
Q ss_pred eeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCC-C-cEEEEecccccCCCcCCccEEEEecCC
Q psy10680 377 ERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGY-I-NVLIASDVASRGLDVEDIKYVVNYDFP 454 (537)
Q Consensus 377 ~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~-~iLvaT~~l~~Gidi~~~~~Vi~~d~p 454 (537)
+.++|.....-...+ +..+...++....+.|.|+...|.+.+..|..+. . -.+++..+...|+|+..+.+|+..|+-
T Consensus 541 kiiifsq~~~~l~l~-~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALV-CLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred ceeeehhHHHHHHHh-hhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 445555555444444 6666677788888899999999999999998533 2 355677899999999999999999999
Q ss_pred CChhhhHhhhhcccCCCCCceeEE
Q psy10680 455 DNTENYVHRIGRTARSTKTGISYT 478 (537)
Q Consensus 455 ~s~~~~~Q~~GRagR~~~~g~~~~ 478 (537)
+++..--|.+-|+.|-|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999998765543
No 181
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.74 E-value=6.2e-05 Score=76.11 Aligned_cols=95 Identities=17% Similarity=0.250 Sum_probs=61.4
Q ss_pred cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccH
Q psy10680 62 DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTR 141 (537)
Q Consensus 62 ~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~ 141 (537)
-++|.|.+|||||++ ++.++..+.. ...+..+++++++.
T Consensus 3 v~~I~G~aGTGKTvl------------------------------------a~~l~~~l~~-----~~~~~~~~~l~~n~ 41 (352)
T PF09848_consen 3 VILITGGAGTGKTVL------------------------------------ALNLAKELQN-----SEEGKKVLYLCGNH 41 (352)
T ss_pred EEEEEecCCcCHHHH------------------------------------HHHHHHHhhc-----cccCCceEEEEecc
Confidence 478999999999987 3444444411 11256689999999
Q ss_pred HHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhh
Q psy10680 142 ELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD 219 (537)
Q Consensus 142 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~ 219 (537)
.|.......+...... ......+..+..+.+.+.........+++|||||||++..
T Consensus 42 ~l~~~l~~~l~~~~~~----------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 42 PLRNKLREQLAKKYNP----------------------KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hHHHHHHHHHhhhccc----------------------chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 9999888887633200 0011223444444433332334567899999999999987
No 182
>KOG1803|consensus
Probab=97.68 E-value=0.0002 Score=73.68 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=50.6
Q ss_pred CCCChhhhhhhhccccCC-cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhc
Q psy10680 44 GKPTSIQAQSWPICLSGR-DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILK 122 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~~~-~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 122 (537)
+.+.+-|..|+......+ -.+++||+|+|||.+ +.-++..+..
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~T------------------------------------lvEiI~qlvk 227 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRT------------------------------------LVEIISQLVK 227 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceee------------------------------------HHHHHHHHHH
Confidence 367788999998887774 678999999999988 3334444443
Q ss_pred CCCCCCCCCceEEEEcccHHHHHHHHHHHH
Q psy10680 123 MPKLEEGDGPIALVLAPTRELAQQIQAVIS 152 (537)
Q Consensus 123 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 152 (537)
. +.++|+.+||..=+.-+.+++.
T Consensus 228 ~-------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 228 Q-------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred c-------CCeEEEEcCchHHHHHHHHHhc
Confidence 3 5679999999998888887653
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.67 E-value=4.1e-05 Score=70.01 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=25.7
Q ss_pred CCCCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 43 ~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
++..+..|..++.++....-+++.||.|||||+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~L 35 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFL 35 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHH
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHH
Confidence 4567889999999999888999999999999998
No 184
>KOG1016|consensus
Probab=97.60 E-value=0.0065 Score=64.29 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=72.0
Q ss_pred cccCCCCHHHHHHHHHHHhcC---CCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEec
Q psy10680 405 GIHGDKSQWNRDQTLRDFRSG---YINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFT 481 (537)
Q Consensus 405 ~~~~~~~~~~r~~~~~~f~~g---~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~ 481 (537)
.+.|..+..+|.+.+++|.+. .+-++++|....-|||+-..+-++.+|..+++.--.|.+-|+-|-|+..-|+++=-
T Consensus 766 rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 766 RLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred cccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 356777888999999999763 24689999999999999999999999999999999999999999999877776655
Q ss_pred CCCcchHHHHHH
Q psy10680 482 PLNGNKAQDLID 493 (537)
Q Consensus 482 ~~~~~~~~~~~~ 493 (537)
--|....++|.+
T Consensus 846 VmD~~lEkkIyd 857 (1387)
T KOG1016|consen 846 VMDNSLEKKIYD 857 (1387)
T ss_pred hhhhhhHHHHHH
Confidence 544444444443
No 185
>PF13245 AAA_19: Part of AAA domain
Probab=97.56 E-value=0.00015 Score=55.30 Aligned_cols=53 Identities=26% Similarity=0.415 Sum_probs=37.0
Q ss_pred CCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcc
Q psy10680 60 GRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAP 139 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 139 (537)
++-++|.||+|||||.+ ++..+..+.... ... +..+++++|
T Consensus 10 ~~~~vv~g~pGtGKT~~------------------------------------~~~~i~~l~~~~--~~~-~~~vlv~a~ 50 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTT------------------------------------LAARIAELLAAR--ADP-GKRVLVLAP 50 (76)
T ss_pred CCeEEEECCCCCCHHHH------------------------------------HHHHHHHHHHHh--cCC-CCeEEEECC
Confidence 34456699999999976 344444444211 011 456999999
Q ss_pred cHHHHHHHHHHH
Q psy10680 140 TRELAQQIQAVI 151 (537)
Q Consensus 140 t~~L~~q~~~~~ 151 (537)
|+..+.++.+.+
T Consensus 51 t~~aa~~l~~rl 62 (76)
T PF13245_consen 51 TRAAADELRERL 62 (76)
T ss_pred CHHHHHHHHHHH
Confidence 999999998887
No 186
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.55 E-value=0.00048 Score=66.07 Aligned_cols=153 Identities=14% Similarity=0.056 Sum_probs=93.9
Q ss_pred CCChhhhhhhhccc----------cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchh
Q psy10680 45 KPTSIQAQSWPICL----------SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYIL 114 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~----------~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (537)
.++..|-|++-..- .+..+++-..||.||-.. ..-
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~-----------------------------------iAg 81 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQ-----------------------------------IAG 81 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccch-----------------------------------hHH
Confidence 57888988884432 235789999999999876 222
Q ss_pred hHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHH
Q psy10680 115 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLID 194 (537)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~ 194 (537)
-++...+.. ..++|.+..+..|..+..+.++++... .+.+..+..- ...+ ...-+..|+++|...|..
T Consensus 82 iI~~n~l~G-------r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~~---~~~~~~GvlF~TYs~L~~ 149 (303)
T PF13872_consen 82 IILENWLRG-------RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYGD---IIRLKEGVLFSTYSTLIS 149 (303)
T ss_pred HHHHHHHcC-------CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccCc---CCCCCCCccchhHHHHHh
Confidence 233443331 235899999999999999999987654 3333333221 1110 011245699999988876
Q ss_pred HHhcC---cccc--------cce-eEEEecchhhhhhCCC--------hHHHHHHHhhccccccccCCceeecC
Q psy10680 195 FLESG---TTNV--------NRI-TYLVLDEADRMLDMGF--------EPQIRKIIQMTRTRDLCRGAEIVVAT 248 (537)
Q Consensus 195 ~l~~~---~~~~--------~~l-~liV~DE~h~~~~~~~--------~~~l~~il~~~~~~~~~~~~~~~saT 248 (537)
.-... ...+ .++ .+|||||||.+.+..- +.....+-..+|..+.. +.|||
T Consensus 150 ~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvv----Y~SAT 219 (303)
T PF13872_consen 150 ESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVV----YASAT 219 (303)
T ss_pred HHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEE----Eeccc
Confidence 54221 1111 223 3899999999866432 12333444555554444 88999
No 187
>KOG1132|consensus
Probab=97.30 E-value=0.00085 Score=72.01 Aligned_cols=40 Identities=28% Similarity=0.318 Sum_probs=31.9
Q ss_pred cccccCCCCCCChhhhhhhhcccc----CCcEEEEccCCCccccc
Q psy10680 36 GLGKNSGYGKPTSIQAQSWPICLS----GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 36 ~l~~~~g~~~~~~~Q~~ai~~~~~----~~~vli~apTGsGKT~~ 76 (537)
++.-.+.| .|++.|..-+..+++ ..+.++-.|||+|||+.
T Consensus 13 Gv~V~fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLs 56 (945)
T KOG1132|consen 13 GVPVEFPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLS 56 (945)
T ss_pred CceeeccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHH
Confidence 45444666 889999988877664 46899999999999987
No 188
>PRK10536 hypothetical protein; Provisional
Probab=97.28 E-value=0.0017 Score=61.30 Aligned_cols=36 Identities=22% Similarity=0.133 Sum_probs=32.2
Q ss_pred CCCCCCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 41 ~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
.++...+..|...+.++.++..+++.||+|+|||+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~L 90 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWI 90 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 566677899999999999888999999999999987
No 189
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.19 E-value=0.00064 Score=60.81 Aligned_cols=105 Identities=20% Similarity=0.195 Sum_probs=65.9
Q ss_pred ceeEEEEeeccCcccccccccccccc--ccccccCCCCHHHHHHHHHHHhcCCCcEEEEec--ccccCCCcCC--ccEEE
Q psy10680 376 IERWVFMEINHNGTETKHYGVSSSLY--RAMGIHGDKSQWNRDQTLRDFRSGYINVLIASD--VASRGLDVED--IKYVV 449 (537)
Q Consensus 376 ~~~~if~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~--~l~~Gidi~~--~~~Vi 449 (537)
...+||+.+....+.. ...+..... ....+.. +..+....++.|++++..||+|+. .+.+|||+|+ ++.||
T Consensus 10 g~~lv~f~Sy~~l~~~-~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 10 GGVLVFFPSYRRLEKV-YERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SEEEEEESSHHHHHHH-HTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCEEEEeCCHHHHHHH-HHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 4455888888777776 444444321 1122222 355678899999999999999998 9999999995 78899
Q ss_pred EecCCC----Ch--------------------------hhhHhhhhcccCCCCCceeEEEecCC
Q psy10680 450 NYDFPD----NT--------------------------ENYVHRIGRTARSTKTGISYTLFTPL 483 (537)
Q Consensus 450 ~~d~p~----s~--------------------------~~~~Q~~GRagR~~~~g~~~~l~~~~ 483 (537)
..+.|- ++ ....|.+||+-|..+.--++++++++
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 888762 11 12368899999986654555566654
No 190
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.14 E-value=0.002 Score=69.01 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=48.5
Q ss_pred ChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCC
Q psy10680 47 TSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKL 126 (537)
Q Consensus 47 ~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 126 (537)
.+.|+.|+...+.++-++|.|++|+|||.+ +..++..+......
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~------------------------------------v~~ll~~l~~~~~~ 190 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT------------------------------------VARLLLALVKQSPK 190 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH------------------------------------HHHHHHHHHHhccc
Confidence 368999999999999999999999999976 33333333322111
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHH
Q psy10680 127 EEGDGPIALVLAPTRELAQQIQAVISI 153 (537)
Q Consensus 127 ~~~~~~~~lil~Pt~~L~~q~~~~~~~ 153 (537)
. .+.++++.+||-.=+....+.+..
T Consensus 191 ~--~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 191 Q--GKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred c--CCCcEEEECCcHHHHHHHHHHHHh
Confidence 0 124689999998777776666553
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.06 E-value=0.0016 Score=71.76 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=31.3
Q ss_pred CCCCCCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 41 ~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
.++ .+++-|++|+..+..++-+++.|++|+|||.+
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~ 354 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTI 354 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH
Confidence 454 78999999999998888999999999999975
No 192
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.02 E-value=0.0023 Score=68.86 Aligned_cols=68 Identities=19% Similarity=0.254 Sum_probs=49.3
Q ss_pred ChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCC
Q psy10680 47 TSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKL 126 (537)
Q Consensus 47 ~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 126 (537)
.+.|+.|+...+.++-.+|.|++|+|||.+ +..++..+.....
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~------------------------------------v~~ll~~l~~~~~- 196 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTT------------------------------------VAKLLAALIQLAD- 196 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHH------------------------------------HHHHHHHHHHhcC-
Confidence 578999999988888999999999999976 3333333332110
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHH
Q psy10680 127 EEGDGPIALVLAPTRELAQQIQAVISI 153 (537)
Q Consensus 127 ~~~~~~~~lil~Pt~~L~~q~~~~~~~ 153 (537)
.....+++.+||..=+....+.+..
T Consensus 197 --~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 197 --GERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred --CCCcEEEEECCcHHHHHHHHHHHHh
Confidence 1134688899998888877776654
No 193
>KOG1805|consensus
Probab=96.96 E-value=0.0012 Score=71.41 Aligned_cols=160 Identities=18% Similarity=0.151 Sum_probs=93.1
Q ss_pred EEEEeeeecccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCC-cEEEEccCCCccccccccccchhc
Q psy10680 7 VRLVSLEARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGR-DLIGIAQTGSGKTLSLTIENTQVA 85 (537)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~-~vli~apTGsGKT~~~~~~~~~~~ 85 (537)
+|++.+..+.|.|..... ..+.|..... -+..++..|++|+..++..+ -.+|.|=+|+|||.+
T Consensus 638 lRdlivd~~pP~f~~~~~--~~~~p~~~~~-----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt--------- 701 (1100)
T KOG1805|consen 638 LRDLIVDLKPPKFVDALS--KVLIPKIKKI-----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT--------- 701 (1100)
T ss_pred HHHHhhhcCCchhhcccc--cccCchhhHH-----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhh---------
Confidence 455566666664443322 2333333221 23478889999998877665 578899999999976
Q ss_pred cccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc---e---
Q psy10680 86 RGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM---R--- 159 (537)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~---~--- 159 (537)
+-.++..+... |.++|..+-|..=+.-+.-.++.+.... |
T Consensus 702 ---------------------------I~~LIkiL~~~-------gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~ 747 (1100)
T KOG1805|consen 702 ---------------------------ISLLIKILVAL-------GKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEE 747 (1100)
T ss_pred ---------------------------HHHHHHHHHHc-------CCeEEEEehhhHHHHHHHHHHhccCcceeecCCcc
Confidence 22233333322 6779999999888888888887543221 1
Q ss_pred -----eeEEEEEcCcc--hhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhC
Q psy10680 160 -----IRHACLYGGTS--KMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDM 220 (537)
Q Consensus 160 -----~~~~~~~~~~~--~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~ 220 (537)
++-.++..+.+ ........-.++.||.||---+...+ +..+.+|+.|+|||-.+...
T Consensus 748 kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 748 KIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQILLP 811 (1100)
T ss_pred ccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEccccccccc
Confidence 00011111111 11122233356788888864433222 24566999999999987643
No 194
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.87 E-value=0.0018 Score=71.75 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=27.9
Q ss_pred CCChhhhhhhhccccC-CcEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICLSG-RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~-~~vli~apTGsGKT~~ 76 (537)
.+++-|++|+..+..+ +-++|.|++|+|||.+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl 384 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM 384 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH
Confidence 6899999999988774 5789999999999965
No 195
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.82 E-value=0.0019 Score=64.10 Aligned_cols=123 Identities=20% Similarity=0.083 Sum_probs=71.0
Q ss_pred CChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCC
Q psy10680 46 PTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPK 125 (537)
Q Consensus 46 ~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 125 (537)
+++-|.+++.. ...+++|.|+.|||||.+ .+--++ .++....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~-----------------------------------l~~ri~-~ll~~~~ 42 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTT-----------------------------------LLERIA-YLLYEGG 42 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHH-----------------------------------HHHHHH-HHHHTSS
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHH-----------------------------------HHHHHH-Hhhcccc
Confidence 47789999987 567999999999999988 332223 3332221
Q ss_pred CCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCc-c-cc
Q psy10680 126 LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGT-T-NV 203 (537)
Q Consensus 126 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~-~~ 203 (537)
....++|++++|+..+.++..++.......... ................+.|+|-..+...+-... . .-
T Consensus 43 ---~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~ 113 (315)
T PF00580_consen 43 ---VPPERILVLTFTNAAAQEMRERIRELLEEEQQE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIG 113 (315)
T ss_dssp ---STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT
T ss_pred ---CChHHheecccCHHHHHHHHHHHHHhcCccccc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhh
Confidence 123459999999999999999998754432110 000001111122345688999888876442211 1 11
Q ss_pred cceeEEEecchh
Q psy10680 204 NRITYLVLDEAD 215 (537)
Q Consensus 204 ~~l~liV~DE~h 215 (537)
-.-++-++|+..
T Consensus 114 ~~~~~~i~~~~~ 125 (315)
T PF00580_consen 114 IDPNFEILDEEE 125 (315)
T ss_dssp SHTTTEEECHHH
T ss_pred ccccceeecchh
Confidence 123455666666
No 196
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.79 E-value=0.0016 Score=66.02 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=26.9
Q ss_pred CChhhhhhhhcc------ccCCcEEEEccCCCccccc
Q psy10680 46 PTSIQAQSWPIC------LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 46 ~~~~Q~~ai~~~------~~~~~vli~apTGsGKT~~ 76 (537)
+++-|++++..+ ..+.++.+.||-|+|||+.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l 38 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL 38 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH
Confidence 677899998888 6778999999999999954
No 197
>PRK08181 transposase; Validated
Probab=96.75 E-value=0.0075 Score=58.09 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=22.8
Q ss_pred CChhhhhhhh----ccccCCcEEEEccCCCccccc
Q psy10680 46 PTSIQAQSWP----ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 46 ~~~~Q~~ai~----~~~~~~~vli~apTGsGKT~~ 76 (537)
+...|..++. .+..+++++++||+|+|||..
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHL 122 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHL 122 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHH
Confidence 3456666653 334678999999999999965
No 198
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.71 E-value=0.001 Score=56.61 Aligned_cols=18 Identities=44% Similarity=0.390 Sum_probs=12.2
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
+++.++|.||+|+|||.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTL 20 (131)
T ss_dssp ----EEEEE-TTSSHHHH
T ss_pred CCcccEEEcCCCCCHHHH
Confidence 345789999999999976
No 199
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.70 E-value=0.0024 Score=71.94 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=29.6
Q ss_pred CCCCCCChhhhhhhhccccCC-cEEEEccCCCccccc
Q psy10680 41 SGYGKPTSIQAQSWPICLSGR-DLIGIAQTGSGKTLS 76 (537)
Q Consensus 41 ~g~~~~~~~Q~~ai~~~~~~~-~vli~apTGsGKT~~ 76 (537)
.|+ .+++-|++|+..++.++ -++|.|+.|+|||++
T Consensus 343 ~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~ 378 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM 378 (988)
T ss_pred cCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH
Confidence 354 78999999999888865 578999999999965
No 200
>PRK06526 transposase; Provisional
Probab=96.64 E-value=0.0051 Score=58.84 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=18.1
Q ss_pred hccccCCcEEEEccCCCccccc
Q psy10680 55 PICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 55 ~~~~~~~~vli~apTGsGKT~~ 76 (537)
..+..+.+++++||+|+|||..
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHL 114 (254)
T ss_pred chhhcCceEEEEeCCCCchHHH
Confidence 3444667999999999999976
No 201
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.40 E-value=0.0066 Score=57.34 Aligned_cols=87 Identities=25% Similarity=0.324 Sum_probs=66.6
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcC-cchhHhHHHhc-cCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 129 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG-TSKMYQTRDLC-RGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 129 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
...|.+|||+..---+.++.+.++.+... +..+..+... ....++...+. ...+|.||||+++..+++.+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 34788999999988888999999876421 2333444433 24556665555 378999999999999999999999999
Q ss_pred eEEEecchhh
Q psy10680 207 TYLVLDEADR 216 (537)
Q Consensus 207 ~liV~DE~h~ 216 (537)
.+||+|--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998764
No 202
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.30 E-value=0.0073 Score=58.98 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=51.2
Q ss_pred ccCCCCCCChhhhhhhhccccCC--cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhH
Q psy10680 39 KNSGYGKPTSIQAQSWPICLSGR--DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPA 116 (537)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~~~~~~--~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (537)
+..|+...+..|+-|+..++... =|.+.|+-|||||+. .+.+.
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlL-----------------------------------ALaAg 266 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLL-----------------------------------ALAAG 266 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHH-----------------------------------HHHHH
Confidence 45789888899999999999764 578899999999988 66666
Q ss_pred hHhhhcCCCCCCCCCceEEEEcccHHHH
Q psy10680 117 LYHILKMPKLEEGDGPIALVLAPTRELA 144 (537)
Q Consensus 117 l~~~~~~~~~~~~~~~~~lil~Pt~~L~ 144 (537)
+......+. -.++|+-=|+..+.
T Consensus 267 leqv~e~~~-----y~KiiVtRp~vpvG 289 (436)
T COG1875 267 LEQVLERKR-----YRKIIVTRPTVPVG 289 (436)
T ss_pred HHHHHHHhh-----hceEEEecCCcCcc
Confidence 777665543 34578878887664
No 203
>KOG1131|consensus
Probab=96.28 E-value=0.018 Score=58.59 Aligned_cols=36 Identities=19% Similarity=0.051 Sum_probs=28.9
Q ss_pred CCCCCCChhhhhhhhccc----cCCcEEEEccCCCccccc
Q psy10680 41 SGYGKPTSIQAQSWPICL----SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 41 ~g~~~~~~~Q~~ai~~~~----~~~~vli~apTGsGKT~~ 76 (537)
+.|...+|.|-+=+..+. .+.+.++-+|+|+|||.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvs 51 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVS 51 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchH
Confidence 677888899987765443 446899999999999976
No 204
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.24 E-value=0.013 Score=50.52 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHhcCC-CcEEEEecccccCCCcCC--ccEEEEecCCC----C-------------------------
Q psy10680 409 DKSQWNRDQTLRDFRSGY-INVLIASDVASRGLDVED--IKYVVNYDFPD----N------------------------- 456 (537)
Q Consensus 409 ~~~~~~r~~~~~~f~~g~-~~iLvaT~~l~~Gidi~~--~~~Vi~~d~p~----s------------------------- 456 (537)
+.+..+...+++.|+... ..||++|..+.+|+|+|+ ++.||..+.|- +
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLP 109 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHH
Confidence 344445677888898654 379999988999999996 57888877552 1
Q ss_pred --hhhhHhhhhcccCCCCCceeEEEecC
Q psy10680 457 --TENYVHRIGRTARSTKTGISYTLFTP 482 (537)
Q Consensus 457 --~~~~~Q~~GRagR~~~~g~~~~l~~~ 482 (537)
...+.|.+||+=|..+.--+++++++
T Consensus 110 ~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 110 DAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHhCccccCcCceEEEEEEec
Confidence 12346788998887554334445544
No 205
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.18 E-value=0.0086 Score=68.28 Aligned_cols=65 Identities=28% Similarity=0.332 Sum_probs=52.0
Q ss_pred CCCCCChhhhhhhhccc----cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHh
Q psy10680 42 GYGKPTSIQAQSWPICL----SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPAL 117 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~~~----~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 117 (537)
|| .+++-|.+.+..+. .++.+++.||||+|||++ |++|++
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTla-----------------------------------YLlpa~ 298 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLA-----------------------------------YLLPAA 298 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHH-----------------------------------HHHHHH
Confidence 45 88999999554443 567899999999999999 888887
Q ss_pred HhhhcCCCCCCCCCceEEEEcccHHHHHHHHH
Q psy10680 118 YHILKMPKLEEGDGPIALVLAPTRELAQQIQA 149 (537)
Q Consensus 118 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 149 (537)
...... +.+++|-++|+.|.+|...
T Consensus 299 ~~a~~~-------~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 299 YFAKKK-------EEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred HHhhcc-------CCeEEEEcCCHHHHHHHHH
Confidence 655432 5569999999999999865
No 206
>PRK06921 hypothetical protein; Provisional
Probab=96.10 E-value=0.02 Score=55.34 Aligned_cols=17 Identities=35% Similarity=0.403 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+.++++.||||+|||..
T Consensus 117 ~~~l~l~G~~G~GKThL 133 (266)
T PRK06921 117 KNSIALLGQPGSGKTHL 133 (266)
T ss_pred CCeEEEECCCCCcHHHH
Confidence 56899999999999965
No 207
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.06 E-value=0.023 Score=48.80 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 57899999999999965
No 208
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.04 E-value=0.011 Score=56.51 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=46.1
Q ss_pred cCCCCCCChhhhhhhhccc-------cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccc
Q psy10680 40 NSGYGKPTSIQAQSWPICL-------SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKY 112 (537)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~~~-------~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (537)
.+.|......+..++..+. ++.++++.||+|+|||..
T Consensus 78 ~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThL------------------------------------ 121 (254)
T COG1484 78 EFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHL------------------------------------ 121 (254)
T ss_pred cccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHH------------------------------------
Confidence 3455566666666554443 567999999999999975
Q ss_pred hhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHH
Q psy10680 113 ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 152 (537)
Q Consensus 113 ~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 152 (537)
+.++...+... |. -++.+++.+|+.++...+.
T Consensus 122 a~Ai~~~l~~~-------g~-sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 122 AIAIGNELLKA-------GI-SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred HHHHHHHHHHc-------CC-eEEEEEHHHHHHHHHHHHh
Confidence 33344444421 33 4566889899888877765
No 209
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.96 E-value=0.018 Score=49.71 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCC---cEEEEecc--cccCCCcCC--ccEEEEecCCC----C---------------------------
Q psy10680 415 RDQTLRDFRSGYI---NVLIASDV--ASRGLDVED--IKYVVNYDFPD----N--------------------------- 456 (537)
Q Consensus 415 r~~~~~~f~~g~~---~iLvaT~~--l~~Gidi~~--~~~Vi~~d~p~----s--------------------------- 456 (537)
...+++.|++... .||+++.. +.+|||+|+ ++.||..+.|- +
T Consensus 33 ~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a 112 (142)
T smart00491 33 TEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDA 112 (142)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3567888876433 69998877 999999987 67888877652 1
Q ss_pred hhhhHhhhhcccCCCCCceeEEEecC
Q psy10680 457 TENYVHRIGRTARSTKTGISYTLFTP 482 (537)
Q Consensus 457 ~~~~~Q~~GRagR~~~~g~~~~l~~~ 482 (537)
.....|.+||+=|..+.--+++++++
T Consensus 113 ~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 113 MRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHhCccccCccceEEEEEEec
Confidence 12246888999997654334555554
No 210
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.93 E-value=0.014 Score=66.36 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=27.6
Q ss_pred CCChhhhhhhhcccc-CCcEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICLS-GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~-~~~vli~apTGsGKT~~ 76 (537)
.+++-|.+|+..+.. ++-++|.|+.|+|||.+
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~ 413 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM 413 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH
Confidence 789999999998754 45689999999999965
No 211
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.87 E-value=0.005 Score=52.57 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+..+++.||+|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 46799999999999975
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.86 E-value=0.048 Score=51.77 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=19.4
Q ss_pred ccceeEEEecchhhhhhCCChH-HHHHHHhh
Q psy10680 203 VNRITYLVLDEADRMLDMGFEP-QIRKIIQM 232 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~~~~~~-~l~~il~~ 232 (537)
+.+.++|||||++......+.. .+..+++.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~ 190 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDR 190 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 4568899999999875433332 44455554
No 213
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.83 E-value=0.03 Score=53.64 Aligned_cols=58 Identities=24% Similarity=0.433 Sum_probs=49.4
Q ss_pred HHHHHHhcCCCcEEEEecccccCCCcCC--------ccEEEEecCCCChhhhHhhhhcccCCCCCc
Q psy10680 417 QTLRDFRSGYINVLIASDVASRGLDVED--------IKYVVNYDFPDNTENYVHRIGRTARSTKTG 474 (537)
Q Consensus 417 ~~~~~f~~g~~~iLvaT~~l~~Gidi~~--------~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g 474 (537)
...+.|.+|+.+|+|.|++.+.||.+.+ -++-|.+.+|+|....+|..||+.|.|+..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~ 117 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVS 117 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhcccccccccc
Confidence 4567899999999999999999998743 234467889999999999999999999853
No 214
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.81 E-value=0.038 Score=53.38 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.+.+++|+||.|||.+
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 5899999999999976
No 215
>PRK04296 thymidine kinase; Provisional
Probab=95.78 E-value=0.0066 Score=55.52 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=13.4
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.-.++.||+|+|||..
T Consensus 3 ~i~litG~~GsGKTT~ 18 (190)
T PRK04296 3 KLEFIYGAMNSGKSTE 18 (190)
T ss_pred EEEEEECCCCCHHHHH
Confidence 3468899999999975
No 216
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.77 E-value=0.045 Score=55.57 Aligned_cols=16 Identities=44% Similarity=0.571 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..++++||||+|||.+
T Consensus 175 ~vi~lvGptGvGKTTT 190 (388)
T PRK12723 175 RVFILVGPTGVGKTTT 190 (388)
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999987
No 217
>KOG0298|consensus
Probab=95.67 E-value=0.022 Score=63.92 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=68.1
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcc---------
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTT--------- 201 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~--------- 201 (537)
.+.+|||+|. ++..||.+++....... +.+..+.|--...........++|||+||...|.+-+.+...
T Consensus 420 tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~ 497 (1394)
T KOG0298|consen 420 TGATLIICPN-AILMQWFEEIHKHISSL-LKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRH 497 (1394)
T ss_pred cCceEEECcH-HHHHHHHHHHHHhcccc-ceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhc
Confidence 4568999998 77789999888665543 566665553221111112234799999999999887644311
Q ss_pred ---------ccccee--EEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCc
Q psy10680 202 ---------NVNRIT--YLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATP 249 (537)
Q Consensus 202 ---------~~~~l~--liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp 249 (537)
++-.+. -|++|||+++-. ......+++..++....= .+|+||
T Consensus 498 qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS~~a~M~~rL~~in~W----~VTGTP 550 (1394)
T KOG0298|consen 498 QSRYMRPNSPLLMVNWWRICLDEAQMVES--SSSAAAEMVRRLHAINRW----CVTGTP 550 (1394)
T ss_pred ccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHHHHHHHHHHhhhhcee----eecCCc
Confidence 111111 389999998754 344555666666553333 566665
No 218
>PRK12377 putative replication protein; Provisional
Probab=95.66 E-value=0.056 Score=51.43 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++++.||+|+|||..
T Consensus 102 ~~l~l~G~~GtGKThL 117 (248)
T PRK12377 102 TNFVFSGKPGTGKNHL 117 (248)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999964
No 219
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.42 E-value=0.05 Score=54.10 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+.++++.||||+|||..
T Consensus 182 ~~~~Lll~G~~GtGKThL 199 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL 199 (329)
T ss_pred cCCcEEEECCCCCcHHHH
Confidence 347999999999999975
No 220
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.33 E-value=0.041 Score=56.37 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=24.7
Q ss_pred CChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 46 PTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 46 ~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
+-......+..+..++++++.||+|+|||..
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~l 210 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFV 210 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHH
Confidence 3445556667777889999999999999976
No 221
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.32 E-value=0.025 Score=61.97 Aligned_cols=72 Identities=22% Similarity=0.163 Sum_probs=51.9
Q ss_pred CCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcC
Q psy10680 44 GKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKM 123 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 123 (537)
..+++-|++|+..- ..+++|.|..|||||.+ +...+..++..
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~v------------------------------------l~~r~ayLl~~ 236 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSV------------------------------------LVARAGWLLAR 236 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHH------------------------------------HHHHHHHHHHh
Confidence 47999999999643 35789999999999987 33333333322
Q ss_pred CCCCCCCCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 124 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 124 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
.. ..+..+|+++.|+..+..+.+++....+
T Consensus 237 ~~---~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 237 GQ---AQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CC---CCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 11 1245699999999999999998876543
No 222
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.31 E-value=0.047 Score=60.33 Aligned_cols=64 Identities=31% Similarity=0.336 Sum_probs=50.4
Q ss_pred CCCCCChhhhhhhhccc---c------CCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccc
Q psy10680 42 GYGKPTSIQAQSWPICL---S------GRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKY 112 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~~~---~------~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (537)
|| .+++-|.+....+. . ++..+|-||||+|||++ |
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTla-----------------------------------Y 66 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLS-----------------------------------Y 66 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHH-----------------------------------H
Confidence 45 88999999665544 3 25788999999999999 8
Q ss_pred hhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHH
Q psy10680 113 ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQ 148 (537)
Q Consensus 113 ~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 148 (537)
++|++...... +.++||-+.|+.|-+|..
T Consensus 67 LlPai~~A~~~-------~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 67 LLAGIPIARAE-------KKKLVISTATVALQEQLV 95 (697)
T ss_pred HHHHHHHHHHc-------CCeEEEEcCCHHHHHHHH
Confidence 88887655433 556899999999999885
No 223
>PRK08727 hypothetical protein; Validated
Probab=95.26 E-value=0.039 Score=52.23 Aligned_cols=16 Identities=31% Similarity=0.187 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..+++.||+|+|||..
T Consensus 42 ~~l~l~G~~G~GKThL 57 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL 57 (233)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3599999999999964
No 224
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.18 E-value=0.034 Score=61.93 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=52.7
Q ss_pred CCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcC
Q psy10680 44 GKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKM 123 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 123 (537)
..+++-|++|+... ...++|.|..|||||.+ +..-+..+...
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~------------------------------------L~~Ria~Li~~ 44 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRV------------------------------------LTHRIAWLLSV 44 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHH------------------------------------HHHHHHHHHHc
Confidence 36899999999653 35799999999999987 33333344432
Q ss_pred CCCCCCCCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 124 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 124 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
.. .....+|+|+.|+.-+.++.+++..+.+
T Consensus 45 ~~---v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 45 EN---ASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred CC---CCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 11 1234699999999999999999987653
No 225
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.12 E-value=0.027 Score=61.97 Aligned_cols=71 Identities=17% Similarity=0.124 Sum_probs=51.4
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.+++-|++|+... ...++|.|++|||||.+ +..-+..++...
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~v------------------------------------L~~Ria~Li~~~ 43 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRV------------------------------------ITNKIAHLIRGC 43 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHH------------------------------------HHHHHHHHHHhc
Confidence 4788999999763 45788999999999988 333334444321
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
. ....++|+++.|+.-+.++.+++....+
T Consensus 44 ~---v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 44 G---YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred C---CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 1 1234699999999999999999986543
No 226
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.12 E-value=0.017 Score=59.83 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=29.3
Q ss_pred cCCcEEEeCCchhHHHHhcCc---c---cccceeEE-EecchhhhhhC
Q psy10680 180 RGAEIVVATPGRLIDFLESGT---T---NVNRITYL-VLDEADRMLDM 220 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~~---~---~~~~l~li-V~DE~h~~~~~ 220 (537)
....|+++|.+.|...+.+.. + ++.+..+| +-||+||+...
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~ 127 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTE 127 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhh
Confidence 356799999999998875432 2 45556665 55999998654
No 227
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.11 E-value=0.089 Score=55.14 Aligned_cols=16 Identities=31% Similarity=0.245 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+.+++.||+|+|||..
T Consensus 149 ~~l~l~G~~G~GKThL 164 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL 164 (450)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3589999999999965
No 228
>PRK05642 DNA replication initiation factor; Validated
Probab=95.01 E-value=0.061 Score=50.96 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=25.4
Q ss_pred cceeEEEecchhhhhhC-CChHHHHHHHhhccccccccCCceeecC
Q psy10680 204 NRITYLVLDEADRMLDM-GFEPQIRKIIQMTRTRDLCRGAEIVVAT 248 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~-~~~~~l~~il~~~~~~~~~~~~~~~saT 248 (537)
.+.+++|+|++|.+... .....+..+++.+.... ...+++++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g---~~ilits~ 138 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSG---RRLLLAAS 138 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcC---CEEEEeCC
Confidence 34679999999987543 23455667776654421 11256665
No 229
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.00 E-value=0.11 Score=53.70 Aligned_cols=15 Identities=33% Similarity=0.255 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.||+|+|||..
T Consensus 138 ~l~l~G~~G~GKThL 152 (405)
T TIGR00362 138 PLFIYGGVGLGKTHL 152 (405)
T ss_pred eEEEECCCCCcHHHH
Confidence 578999999999975
No 230
>PRK09183 transposase/IS protein; Provisional
Probab=94.99 E-value=0.1 Score=50.15 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=17.9
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
.+.++.++++.||+|+|||..
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHL 118 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHH
Confidence 355778999999999999965
No 231
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.96 E-value=0.13 Score=49.96 Aligned_cols=44 Identities=23% Similarity=0.083 Sum_probs=28.2
Q ss_pred hhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 32 VASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 32 ~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
++.++|.. .|++...+.-.+.+-.+..|.-+++.|+||+|||..
T Consensus 3 ~~~~~~~~-~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l 46 (271)
T cd01122 3 EIREALSN-EEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTF 46 (271)
T ss_pred hhhccccc-cCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHH
Confidence 34445542 244443333344445677888999999999999974
No 232
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.90 E-value=0.058 Score=60.06 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=52.0
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.+++-|++|+... ...++|.|..|||||.+ +..-+..+....
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~v------------------------------------l~~Ria~Li~~~ 50 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRV------------------------------------LVHRIAWLMQVE 50 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHH------------------------------------HHHHHHHHHHcC
Confidence 6899999999753 35799999999999987 233333443321
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
. .....+|+|+-|+.-+.++.+++..+.+
T Consensus 51 ~---v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 51 N---ASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred C---CChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 1 1234699999999999999999987653
No 233
>PRK08116 hypothetical protein; Validated
Probab=94.87 E-value=0.17 Score=48.86 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..+++.|++|+|||..
T Consensus 115 ~gl~l~G~~GtGKThL 130 (268)
T PRK08116 115 VGLLLWGSVGTGKTYL 130 (268)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3599999999999975
No 234
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.81 E-value=0.13 Score=45.17 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=13.9
Q ss_pred ccceeEEEecchhhhhh
Q psy10680 203 VNRITYLVLDEADRMLD 219 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~ 219 (537)
..+.+++|+||.+.+..
T Consensus 83 ~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 83 RGGDDLIILDELTRLVR 99 (165)
T ss_pred CCCCEEEEEEcHHHHHH
Confidence 45688999999998754
No 235
>KOG0989|consensus
Probab=94.55 E-value=0.059 Score=51.66 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=21.7
Q ss_pred cccceeEEEecchhhhhhCCChHHHHHHHhhcc
Q psy10680 202 NVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 234 (537)
Q Consensus 202 ~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~ 234 (537)
....++.||+||||.|.... ...+++.++...
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s 157 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFS 157 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccc
Confidence 44567999999999987643 334555555533
No 236
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.51 E-value=0.12 Score=56.77 Aligned_cols=27 Identities=15% Similarity=0.381 Sum_probs=18.2
Q ss_pred cceeEEEecchhhhhhCCChHHHHHHHh
Q psy10680 204 NRITYLVLDEADRMLDMGFEPQIRKIIQ 231 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~~~~~l~~il~ 231 (537)
..+.+||+||+|.+... ....+..++.
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR 894 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFD 894 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHH
Confidence 45679999999999764 2334444444
No 237
>PRK06893 DNA replication initiation factor; Validated
Probab=94.42 E-value=0.092 Score=49.56 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=19.7
Q ss_pred cceeEEEecchhhhhhC-CChHHHHHHHhhcc
Q psy10680 204 NRITYLVLDEADRMLDM-GFEPQIRKIIQMTR 234 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~-~~~~~l~~il~~~~ 234 (537)
.+.+++++||+|.+... .+...+..++....
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~ 121 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIK 121 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHH
Confidence 45789999999987543 22334555555443
No 238
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.38 E-value=0.044 Score=51.28 Aligned_cols=33 Identities=6% Similarity=0.148 Sum_probs=21.8
Q ss_pred ccceeEEEecchhhhhhCC-ChHHHHHHHhhccc
Q psy10680 203 VNRITYLVLDEADRMLDMG-FEPQIRKIIQMTRT 235 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~~~-~~~~l~~il~~~~~ 235 (537)
+...+++++|++|.+.... ....+..+++.+..
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~ 128 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIE 128 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHh
Confidence 4468999999999986532 23455555555544
No 239
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.37 E-value=0.076 Score=53.50 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
+|..++++||||+|||.+
T Consensus 136 ~g~ii~lvGptGvGKTTt 153 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTT 153 (374)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456899999999999976
No 240
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.33 E-value=0.13 Score=57.29 Aligned_cols=125 Identities=17% Similarity=0.117 Sum_probs=76.5
Q ss_pred ceeEEEEeeccCcccccccccccccc------ccccccCCCCHHHHHHHHHHHhc----CCCcEEEEe--cccccCCCcC
Q psy10680 376 IERWVFMEINHNGTETKHYGVSSSLY------RAMGIHGDKSQWNRDQTLRDFRS----GYINVLIAS--DVASRGLDVE 443 (537)
Q Consensus 376 ~~~~if~~~~~~~~~l~~~~l~~~~~------~~~~~~~~~~~~~r~~~~~~f~~----g~~~iLvaT--~~l~~Gidi~ 443 (537)
...+||+.+....+.+ ...+...+. ....+.-+-...++..+++.|+. |...||+|+ ..+++|||++
T Consensus 523 gg~lvfFpSy~~l~~v-~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~ 601 (705)
T TIGR00604 523 DGIVVFFPSYSYLENI-VSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFC 601 (705)
T ss_pred CcEEEEccCHHHHHHH-HHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccccC
Confidence 4567888887776655 222222211 01112211222467888999964 456799999 8999999998
Q ss_pred C--ccEEEEecCCC-Ch------------------------------hhhHhhhhcccCCCCCceeEEEecCCCcchHHH
Q psy10680 444 D--IKYVVNYDFPD-NT------------------------------ENYVHRIGRTARSTKTGISYTLFTPLNGNKAQD 490 (537)
Q Consensus 444 ~--~~~Vi~~d~p~-s~------------------------------~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~ 490 (537)
+ ++.||..+.|- ++ ....|.+||+=|..+.--++++++++=..
T Consensus 602 ~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R~~~---- 677 (705)
T TIGR00604 602 DDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKRYAR---- 677 (705)
T ss_pred CCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehhcCC----
Confidence 6 78899988773 11 23468899999976553455666664221
Q ss_pred HHHHHHHccccccHHHHHHH
Q psy10680 491 LIDILNEAHQFVPDRLLLLA 510 (537)
Q Consensus 491 ~~~~l~~~~~~~~~~l~~~~ 510 (537)
......+|+|+...-
T Consensus 678 -----~~~~~~lp~W~~~~~ 692 (705)
T TIGR00604 678 -----SNKRKKLPKWIQDTI 692 (705)
T ss_pred -----cchhhhcCHHHHhhc
Confidence 112347788877433
No 241
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.32 E-value=0.077 Score=50.30 Aligned_cols=16 Identities=13% Similarity=0.192 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..++++||+|+|||..
T Consensus 46 ~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 46 GYIYLWSREGAGRSHL 61 (235)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5899999999999965
No 242
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.29 E-value=0.18 Score=52.55 Aligned_cols=30 Identities=7% Similarity=0.180 Sum_probs=19.5
Q ss_pred cceeEEEecchhhhhhCC-ChHHHHHHHhhc
Q psy10680 204 NRITYLVLDEADRMLDMG-FEPQIRKIIQMT 233 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~-~~~~l~~il~~~ 233 (537)
.+.+++++||+|.+.... ....+..++..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l 231 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSL 231 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHH
Confidence 457899999999986532 234455555444
No 243
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.20 E-value=0.05 Score=60.16 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=50.3
Q ss_pred CChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCC
Q psy10680 46 PTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPK 125 (537)
Q Consensus 46 ~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 125 (537)
+++-|++++... ..+++|.|..|||||.+ ++.-+..++....
T Consensus 2 Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~------------------------------------L~~ri~~ll~~~~ 43 (664)
T TIGR01074 2 LNPQQQEAVEYV--TGPCLVLAGAGSGKTRV------------------------------------ITNKIAYLIQNCG 43 (664)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHH------------------------------------HHHHHHHHHHhcC
Confidence 678899998653 46899999999999987 3333334443211
Q ss_pred CCCCCCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 126 LEEGDGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 126 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
.....+++|+.|+.-+.++.+++....+
T Consensus 44 ---~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 44 ---YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred ---CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 1234689999999999999998876543
No 244
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.19 E-value=0.11 Score=47.03 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=12.7
Q ss_pred EEEEccCCCccccc
Q psy10680 63 LIGIAQTGSGKTLS 76 (537)
Q Consensus 63 vli~apTGsGKT~~ 76 (537)
++|.||+|+|||..
T Consensus 2 ~li~G~~G~GKT~l 15 (187)
T cd01124 2 TLLSGGPGTGKTTF 15 (187)
T ss_pred EEEEcCCCCCHHHH
Confidence 68999999999975
No 245
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.12 E-value=0.13 Score=58.30 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.+.++.||+|+|||.+
T Consensus 195 ~n~lL~G~pGvGKT~l 210 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAI 210 (852)
T ss_pred CceEEEcCCCCCHHHH
Confidence 5899999999999975
No 246
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.10 E-value=0.1 Score=61.62 Aligned_cols=123 Identities=18% Similarity=0.101 Sum_probs=74.6
Q ss_pred CChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCC
Q psy10680 46 PTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPK 125 (537)
Q Consensus 46 ~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 125 (537)
.|+-|.+||. ..+++++|.|.-|||||.+ .+--++..+...
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~-----------------------------------lv~r~~~~~~~~-- 42 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAV-----------------------------------LVERIIKKILRG-- 42 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHH-----------------------------------HHHHHHHHHhcC--
Confidence 5789999997 4678999999999999988 333344433322
Q ss_pred CCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHH-hcCcccc-
Q psy10680 126 LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFL-ESGTTNV- 203 (537)
Q Consensus 126 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l-~~~~~~~- 203 (537)
..-..+++|+=|+.-+.++..++.......- . ...........+..-...-|+|-..|+.-+ ......+
T Consensus 43 ---~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~-~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ 113 (1232)
T TIGR02785 43 ---VDIDRLLVVTFTNAAAREMKERIEEALQKAL-Q-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLD 113 (1232)
T ss_pred ---CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH-h-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcC
Confidence 1123489999999999999888875443210 0 000111111222223456799999888654 3322211
Q ss_pred cceeEEEecchhh
Q psy10680 204 NRITYLVLDEADR 216 (537)
Q Consensus 204 ~~l~liV~DE~h~ 216 (537)
-+.++=|.||...
T Consensus 114 ldP~F~i~de~e~ 126 (1232)
T TIGR02785 114 LDPSFRILTDTEQ 126 (1232)
T ss_pred CCCCceeCCHHHH
Confidence 1224456888776
No 247
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.05 E-value=0.21 Score=51.38 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.+++|.||+|+|||.+
T Consensus 56 ~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT 71 (394)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999976
No 248
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.00 E-value=0.07 Score=49.31 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=13.8
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
++|+.||+|+|||..
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 799999999999965
No 249
>KOG0331|consensus
Probab=93.98 E-value=0.13 Score=53.50 Aligned_cols=74 Identities=54% Similarity=0.874 Sum_probs=58.9
Q ss_pred cCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCC-CcccceeehhhhHHHH
Q psy10680 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAH-PVVPVSLFISERRDTI 313 (537)
Q Consensus 240 ~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 313 (537)
.++.++.|||+++.++++.......++.++++|+++++++.+|.+++..++....... +.+..+..+......+
T Consensus 214 ~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~l 288 (519)
T KOG0331|consen 214 RGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQL 288 (519)
T ss_pred cCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHH
Confidence 3455999999999999999999999999999999999999999999999999983333 3444444444433333
No 250
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.94 E-value=0.25 Score=51.49 Aligned_cols=16 Identities=31% Similarity=0.245 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..+++.||+|+|||..
T Consensus 131 n~l~lyG~~G~GKTHL 146 (440)
T PRK14088 131 NPLFIYGGVGLGKTHL 146 (440)
T ss_pred CeEEEEcCCCCcHHHH
Confidence 3689999999999965
No 251
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.80 E-value=0.25 Score=48.67 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
++++++.||+|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45899999999999964
No 252
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.77 E-value=0.29 Score=51.01 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+++.|++|+|||..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL 96 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTL 96 (446)
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345789999999999975
No 253
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.77 E-value=0.16 Score=53.09 Aligned_cols=71 Identities=23% Similarity=0.177 Sum_probs=44.9
Q ss_pred ChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCC
Q psy10680 47 TSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKL 126 (537)
Q Consensus 47 ~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 126 (537)
.+.|-++|.. ..++-++|+|..|||||.+ .|.=++.++-.-+.
T Consensus 214 QkEQneIIR~-ek~~ilVVQGaAGSGKTti------------------------------------ALHRvAyLlY~~R~ 256 (747)
T COG3973 214 QKEQNEIIRF-EKNKILVVQGAAGSGKTTI------------------------------------ALHRVAYLLYGYRG 256 (747)
T ss_pred hHhHHHHHhc-cCCCeEEEecCCCCCchhH------------------------------------HHHHHHHHHhcccc
Confidence 4445555533 4556789999999999987 22222333222221
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHhc
Q psy10680 127 EEGDGPIALVLAPTRELAQQIQAVISIFS 155 (537)
Q Consensus 127 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 155 (537)
.-. +..+|++.|++-+..-+.+.+=.++
T Consensus 257 ~l~-~k~vlvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 257 PLQ-AKPVLVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred ccc-cCceEEEcCcHHHHHHHHHhchhhc
Confidence 111 3338999999999988888875443
No 254
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.68 E-value=0.23 Score=44.09 Aligned_cols=53 Identities=15% Similarity=0.380 Sum_probs=30.7
Q ss_pred cceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHHHhhhCCc
Q psy10680 204 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESGTT 261 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~~~~~ 261 (537)
...+++|+||||.|... ....+.+.+..-+..-.. ++.++ +..+...+.+...
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~f----iL~t~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYF----ILITNNPSKILPTIRSRCQ 154 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEE----EEEES-GGGS-HHHHTTSE
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEE----EEEECChHHChHHHHhhce
Confidence 56899999999998653 233444444443333333 44444 7777776666443
No 255
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.68 E-value=0.25 Score=46.38 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+..+++.||+|+|||..
T Consensus 37 ~~~~lll~G~~G~GKT~l 54 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHL 54 (226)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 346899999999999975
No 256
>KOG0339|consensus
Probab=93.68 E-value=0.14 Score=52.14 Aligned_cols=76 Identities=51% Similarity=0.806 Sum_probs=65.0
Q ss_pred cCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHH
Q psy10680 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILH 315 (537)
Q Consensus 240 ~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (537)
..+.++.|||+++.+++.-....+.+..++++|+++++++.||.++++.+........+.+.++.....+...+..
T Consensus 345 ~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lar 420 (731)
T KOG0339|consen 345 EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLAR 420 (731)
T ss_pred cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHH
Confidence 4556999999999999999999999999999999999999999999999999988888777777666555544443
No 257
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=93.68 E-value=0.21 Score=53.90 Aligned_cols=60 Identities=27% Similarity=0.256 Sum_probs=49.2
Q ss_pred hccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceE
Q psy10680 55 PICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIA 134 (537)
Q Consensus 55 ~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 134 (537)
..+..++.+++.||||+|||++ |++|++..+.... +.++
T Consensus 11 ~al~~~~~lliEA~TGtGKTlA-----------------------------------YLlpal~~~~~~~------~~rv 49 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLA-----------------------------------MIMAALTMLKERP------DQKI 49 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHH-----------------------------------HHHHHHHHHHhcc------CceE
Confidence 3445667899999999999999 8888887665321 5679
Q ss_pred EEEcccHHHHHHHHHHHHHhc
Q psy10680 135 LVLAPTRELAQQIQAVISIFS 155 (537)
Q Consensus 135 lil~Pt~~L~~q~~~~~~~~~ 155 (537)
||++||++|..|+.+.+..+.
T Consensus 50 lIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 50 AIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred EEECCcHHHHHHHHHHHHHHH
Confidence 999999999999999887766
No 258
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.61 E-value=0.25 Score=51.64 Aligned_cols=33 Identities=9% Similarity=0.030 Sum_probs=21.0
Q ss_pred ccceeEEEecchhhhhhCC-ChHHHHHHHhhccc
Q psy10680 203 VNRITYLVLDEADRMLDMG-FEPQIRKIIQMTRT 235 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~~~-~~~~l~~il~~~~~ 235 (537)
..+.+++|+||+|.+.... ....+..++..+..
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~ 237 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIE 237 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHH
Confidence 3457899999999876432 23455555555544
No 259
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.48 E-value=0.35 Score=49.03 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+++.|++|+|||..
T Consensus 81 ~GslvLI~G~pG~GKStL 98 (372)
T cd01121 81 PGSVILIGGDPGIGKSTL 98 (372)
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 345789999999999975
No 260
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.36 E-value=0.16 Score=57.41 Aligned_cols=16 Identities=38% Similarity=0.439 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+++++.||+|+|||.+
T Consensus 201 ~n~lL~G~pGvGKTal 216 (821)
T CHL00095 201 NNPILIGEPGVGKTAI 216 (821)
T ss_pred CCeEEECCCCCCHHHH
Confidence 4999999999999976
No 261
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.33 E-value=0.35 Score=54.83 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.+.++.||+|+|||.+
T Consensus 200 ~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 200 NNPVLIGEPGVGKTAI 215 (857)
T ss_pred CceEEECCCCCCHHHH
Confidence 4899999999999975
No 262
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.32 E-value=0.1 Score=61.61 Aligned_cols=32 Identities=31% Similarity=0.181 Sum_probs=28.5
Q ss_pred CCChhhhhhhhccccC--CcEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICLSG--RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~--~~vli~apTGsGKT~~ 76 (537)
.+++-|++|+..++.+ +-++|.|..|+|||.+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~ 868 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ 868 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH
Confidence 6899999999988854 6799999999999976
No 263
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.30 E-value=0.15 Score=57.00 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=51.4
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.+++-|.+|+... ...++|.|..|||||.+ +..-+..+....
T Consensus 4 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~------------------------------------l~~ria~Li~~~ 45 (726)
T TIGR01073 4 HLNPEQREAVKTT--EGPLLIMAGAGSGKTRV------------------------------------LTHRIAHLIAEK 45 (726)
T ss_pred ccCHHHHHHHhCC--CCCEEEEeCCCCCHHHH------------------------------------HHHHHHHHHHcC
Confidence 6889999999753 45799999999999987 233333333321
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
. ....++|+++-|+.-+.++.+++..+.+
T Consensus 46 ~---i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 46 N---VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred C---CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 1 1124599999999999999999886643
No 264
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.29 E-value=0.13 Score=55.24 Aligned_cols=126 Identities=19% Similarity=0.137 Sum_probs=72.2
Q ss_pred CCChhhhhhhhccccC--CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhc
Q psy10680 45 KPTSIQAQSWPICLSG--RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILK 122 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~--~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 122 (537)
..+|+|.+.+..+... +.|.++.++-+|||.+ .+..+...+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~-----------------------------------~~n~~g~~i~~ 60 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTEL-----------------------------------LLNWIGYSIDQ 60 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHH-----------------------------------HHhhceEEEEe
Confidence 6789999999998866 4899999999999987 22222222222
Q ss_pred CCCCCCCCCceEEEEcccHHHHHHHH-HHHHHhcccce-eeEEEEEc---CcchhHhHHHhccCCcEEEeCCchhHHHHh
Q psy10680 123 MPKLEEGDGPIALVLAPTRELAQQIQ-AVISIFSRTMR-IRHACLYG---GTSKMYQTRDLCRGAEIVVATPGRLIDFLE 197 (537)
Q Consensus 123 ~~~~~~~~~~~~lil~Pt~~L~~q~~-~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~ 197 (537)
. ..-++++.||.+++..+. ..+.-+..... ++ ..+.. .........+.-.+..+.++...+-.
T Consensus 61 ~-------P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~-~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~---- 128 (557)
T PF05876_consen 61 D-------PGPMLYVQPTDDAAKDFSKERLDPMIRASPVLR-RKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPS---- 128 (557)
T ss_pred C-------CCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHH-HHhCchhhcccCCchhheecCCCEEEEEeCCCCc----
Confidence 2 233799999999999885 66654443221 11 11111 00000001111113344444332211
Q ss_pred cCcccccceeEEEecchhhhhh
Q psy10680 198 SGTTNVNRITYLVLDEADRMLD 219 (537)
Q Consensus 198 ~~~~~~~~l~liV~DE~h~~~~ 219 (537)
.+.-..++++++||++.+..
T Consensus 129 --~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 129 --NLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred --ccccCCcCEEEEechhhccc
Confidence 12335578999999999843
No 265
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.29 E-value=0.42 Score=51.32 Aligned_cols=65 Identities=8% Similarity=-0.041 Sum_probs=44.2
Q ss_pred hhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCC
Q psy10680 50 QAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEG 129 (537)
Q Consensus 50 Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 129 (537)
+.+.+-.....+-.++.+|=|.|||++ ..+.+. .+...
T Consensus 177 ~id~~~~~fkq~~tV~taPRqrGKS~i-----------------------------------Vgi~l~-~La~f------ 214 (752)
T PHA03333 177 EIDRIFDEYGKCYTAATVPRRCGKTTI-----------------------------------MAIILA-AMISF------ 214 (752)
T ss_pred HHHHHHHHHhhcceEEEeccCCCcHHH-----------------------------------HHHHHH-HHHHh------
Confidence 334443444557788999999999987 222222 22211
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 130 DGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 130 ~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
.+.+++|.+|...-+.++.+.++....
T Consensus 215 ~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 215 LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 145699999999999999888877665
No 266
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.23 E-value=0.1 Score=51.66 Aligned_cols=32 Identities=31% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCChhhhhhhhccc-cCCcEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICL-SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~-~~~~vli~apTGsGKT~~ 76 (537)
..++.|.+.+..+. .+.+++|+|+||||||..
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl 160 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTL 160 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 35566777765544 556999999999999975
No 267
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.22 E-value=0.11 Score=46.98 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=15.8
Q ss_pred hccccCCcEEEEccCCCccccc
Q psy10680 55 PICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 55 ~~~~~~~~vli~apTGsGKT~~ 76 (537)
..+.+++++++.||+|+|||..
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThL 63 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHL 63 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHH
Confidence 3344678999999999999975
No 268
>KOG0701|consensus
Probab=93.13 E-value=0.018 Score=67.06 Aligned_cols=56 Identities=34% Similarity=0.557 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCC
Q psy10680 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARS 470 (537)
Q Consensus 415 r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~ 470 (537)
+.+++..|....+++|++|+++.+|+|++.++.|+.++.|.....|+|..||+-+.
T Consensus 343 ~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 343 QAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccc
Confidence 67889999999999999999999999999999999999999999999999997664
No 269
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.12 E-value=0.27 Score=52.68 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=21.5
Q ss_pred ccceeEEEecchhhhhhCC-ChHHHHHHHhhccc
Q psy10680 203 VNRITYLVLDEADRMLDMG-FEPQIRKIIQMTRT 235 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~~~-~~~~l~~il~~~~~ 235 (537)
+.++++|+|||+|.+.... ....+..+++.+..
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e 408 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHN 408 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHh
Confidence 3457899999999986543 23445556655544
No 270
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.11 E-value=0.79 Score=46.38 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+.+.++||||+|||..
T Consensus 242 ~vI~LVGptGvGKTTT 257 (436)
T PRK11889 242 QTIALIGPTGVGKTTT 257 (436)
T ss_pred cEEEEECCCCCcHHHH
Confidence 5788999999999976
No 271
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.11 E-value=0.18 Score=50.61 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.++-+.++||||.|||.+
T Consensus 202 ~~~vi~LVGPTGVGKTTT 219 (407)
T COG1419 202 QKRVIALVGPTGVGKTTT 219 (407)
T ss_pred cCcEEEEECCCCCcHHHH
Confidence 367899999999999987
No 272
>PHA02533 17 large terminase protein; Provisional
Probab=93.09 E-value=0.16 Score=54.09 Aligned_cols=123 Identities=13% Similarity=0.038 Sum_probs=72.7
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.|.+.|.+.+..+..++-.++..+=..|||.+ ...-++......+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl-----------------------------------~a~~al~~a~~~~ 103 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTV-----------------------------------VAIFLLHYVCFNK 103 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHH-----------------------------------HHHHHHHHHHhCC
Confidence 68899999998776666678888889999987 3322333332221
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcccce--eeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCccc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR--IRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTN 202 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 202 (537)
+..+++++|+..-+..+.+.++.+..... .+........ ..-.+.+++.|.+.|... ....
T Consensus 104 ------~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~~i~~~~~----~~I~l~NGS~I~~lss~~-------~t~r 166 (534)
T PHA02533 104 ------DKNVGILAHKASMAAEVLDRTKQAIELLPDFLQPGIVEWNK----GSIELENGSKIGAYASSP-------DAVR 166 (534)
T ss_pred ------CCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhcceeecCc----cEEEeCCCCEEEEEeCCC-------CccC
Confidence 45799999999999998888876544321 1111000000 000112455554444321 1112
Q ss_pred ccceeEEEecchhhhhh
Q psy10680 203 VNRITYLVLDEADRMLD 219 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~ 219 (537)
=..++++|+||+|.+.+
T Consensus 167 G~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 167 GNSFAMIYIDECAFIPN 183 (534)
T ss_pred CCCCceEEEeccccCCC
Confidence 23467899999997643
No 273
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.09 E-value=0.25 Score=46.99 Aligned_cols=21 Identities=29% Similarity=0.128 Sum_probs=17.6
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
.+..|.-++|.|+||+|||..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~ 29 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAF 29 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHH
Confidence 456677899999999999974
No 274
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.05 E-value=0.29 Score=48.76 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=25.4
Q ss_pred CCChhhhhhhhccccCC----cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICLSGR----DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~----~vli~apTGsGKT~~ 76 (537)
..+|.|...|..+.+.. ..+++||.|.|||..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~ 38 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRAL 38 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHH
Confidence 35788999997776542 588999999999965
No 275
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.00 E-value=0.18 Score=61.79 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=27.7
Q ss_pred CCChhhhhhhhccccC--CcEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICLSG--RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~--~~vli~apTGsGKT~~ 76 (537)
.+++-|++|+..++.. +-.+|.|+.|+|||.+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~ 462 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI 462 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH
Confidence 6889999999888765 5788999999999965
No 276
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.99 E-value=0.24 Score=49.32 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=30.7
Q ss_pred ccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHHHhhhCC
Q psy10680 203 VNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESGT 260 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~~~~ 260 (537)
....++||+||||.|... ....+...+..-+..... ++++. |..+...+.+.+
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~----il~~n~~~~il~tI~SRc 160 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRF----ILITNDPSKILPTIRSRC 160 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEE----EEEcCChhhccchhhhcc
Confidence 367899999999998762 333344444333332222 55554 666665555543
No 277
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.98 E-value=0.2 Score=49.75 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=17.4
Q ss_pred ceeEEEecchhhhhhCCChHHHHHHHhh
Q psy10680 205 RITYLVLDEADRMLDMGFEPQIRKIIQM 232 (537)
Q Consensus 205 ~l~liV~DE~h~~~~~~~~~~l~~il~~ 232 (537)
..++||+||+|.+........+..++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~ 127 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEA 127 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHh
Confidence 4679999999988332233344444444
No 278
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.82 E-value=0.32 Score=50.76 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
|.-+.++||||+|||.+
T Consensus 256 g~Vi~LvGpnGvGKTTT 272 (484)
T PRK06995 256 GGVFALMGPTGVGKTTT 272 (484)
T ss_pred CcEEEEECCCCccHHHH
Confidence 45688999999999976
No 279
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.74 E-value=0.28 Score=48.98 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.+.|+.||+|+|||..
T Consensus 49 ~SmIl~GPPG~GKTTl 64 (436)
T COG2256 49 HSMILWGPPGTGKTTL 64 (436)
T ss_pred ceeEEECCCCCCHHHH
Confidence 3899999999999965
No 280
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.63 E-value=0.12 Score=53.14 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=24.0
Q ss_pred ChhhhhhhhccccCC--cEEEEccCCCccccc
Q psy10680 47 TSIQAQSWPICLSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 47 ~~~Q~~ai~~~~~~~--~vli~apTGsGKT~~ 76 (537)
.+.|.+.+..+.... =+++.||||||||.+
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 667888887777654 478899999999987
No 281
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.57 E-value=0.15 Score=52.97 Aligned_cols=15 Identities=33% Similarity=0.321 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.++++||.|+|||.+
T Consensus 42 a~Lf~GP~GtGKTTl 56 (484)
T PRK14956 42 AYIFFGPRGVGKTTI 56 (484)
T ss_pred EEEEECCCCCCHHHH
Confidence 379999999999976
No 282
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.52 E-value=0.25 Score=49.50 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=13.9
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.||+|+|||..
T Consensus 38 ~lll~Gp~GtGKT~l 52 (337)
T PRK12402 38 HLLVQGPPGSGKTAA 52 (337)
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999975
No 283
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.52 E-value=0.61 Score=42.01 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=22.6
Q ss_pred EEEeCCchhHHHHhcCcccccceeEEEecchhhhhh
Q psy10680 184 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD 219 (537)
Q Consensus 184 Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~ 219 (537)
++|-.+..+...+........ .++|.+|||+.+..
T Consensus 62 ~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~ 96 (201)
T COG1435 62 VVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDE 96 (201)
T ss_pred eecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCH
Confidence 555566666666554322222 88999999998654
No 284
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=92.49 E-value=0.22 Score=51.37 Aligned_cols=137 Identities=14% Similarity=0.126 Sum_probs=72.0
Q ss_pred cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccH
Q psy10680 62 DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTR 141 (537)
Q Consensus 62 ~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~ 141 (537)
-.++.|..|||||.+ ..+-++..+.... .+..++++-|+.
T Consensus 3 ~~i~~GgrgSGKS~~-----------------------------------~~~~~~~~~~~~~-----~~~~~~~~r~~~ 42 (396)
T TIGR01547 3 EIIAKGGRRSGKTFA-----------------------------------IALKLVEKLAINK-----KQQNILAARKVQ 42 (396)
T ss_pred eEEEeCCCCcccHHH-----------------------------------HHHHHHHHHHhcC-----CCcEEEEEehhh
Confidence 367899999999988 5666666555531 256688898988
Q ss_pred H-HHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhcc-CCcEEEeCC-chhHHHHhcCcccccceeEEEecchhhhh
Q psy10680 142 E-LAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCR-GAEIVVATP-GRLIDFLESGTTNVNRITYLVLDEADRML 218 (537)
Q Consensus 142 ~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~Ivv~Tp-~~l~~~l~~~~~~~~~l~liV~DE~h~~~ 218 (537)
. |..-+...++.....+++....-....+. . -.+.. +..|++..- +...++ .....++++.+|||..+.
T Consensus 43 ~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-~--i~~~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~ 114 (396)
T TIGR01547 43 NSIRDSVFKDIENLLSIEGINYEFKKSKSSM-E--IKILNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLT 114 (396)
T ss_pred hHHHHHHHHHHHHHHHHcCChhheeecCCcc-E--EEecCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcC
Confidence 7 55556677765555444321111111100 0 00111 334555443 221111 122346999999999985
Q ss_pred hCCChHHHHHHHhhccccccccCCceeecCchh
Q psy10680 219 DMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGR 251 (537)
Q Consensus 219 ~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~ 251 (537)
.. .+..++..++.... ....+++.+|..
T Consensus 115 ~~----~~~~l~~rlr~~~~-~~~i~~t~NP~~ 142 (396)
T TIGR01547 115 FE----DIKELIPRLRETGG-KKFIIFSSNPES 142 (396)
T ss_pred HH----HHHHHHHHhhccCC-ccEEEEEcCcCC
Confidence 43 44444444332110 001367777754
No 285
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=0.12 Score=52.19 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=20.2
Q ss_pred ccceeEEEecchhhhhhCCChHHHHHHHhhc
Q psy10680 203 VNRITYLVLDEADRMLDMGFEPQIRKIIQMT 233 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~~~~~~~l~~il~~~ 233 (537)
....-+||+||++++.+..- ..+..++...
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred cCCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 34456899999999987643 4555555443
No 286
>KOG0744|consensus
Probab=92.39 E-value=0.72 Score=44.77 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
++-++++||+|+|||-.
T Consensus 177 NRliLlhGPPGTGKTSL 193 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL 193 (423)
T ss_pred eeEEEEeCCCCCChhHH
Confidence 35678999999999953
No 287
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.38 E-value=0.31 Score=48.18 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=26.0
Q ss_pred CCCChhhhhhhhccc----cCC---cEEEEccCCCccccc
Q psy10680 44 GKPTSIQAQSWPICL----SGR---DLIGIAQTGSGKTLS 76 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~----~~~---~vli~apTGsGKT~~ 76 (537)
..++|.|..+|..+. +|+ ..++.||.|+||+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~l 42 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAV 42 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH
Confidence 367888999987766 333 589999999999865
No 288
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.20 E-value=0.2 Score=49.19 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=22.2
Q ss_pred CChhhhhhhhc-cccCCcEEEEccCCCccccc
Q psy10680 46 PTSIQAQSWPI-CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 46 ~~~~Q~~ai~~-~~~~~~vli~apTGsGKT~~ 76 (537)
.++.|.+.+.. +..+++++++||||||||..
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl 148 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTL 148 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 34445555544 44557999999999999975
No 289
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.18 E-value=0.38 Score=45.80 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++++.||+|.|||..
T Consensus 53 DHvLl~GPPGlGKTTL 68 (332)
T COG2255 53 DHVLLFGPPGLGKTTL 68 (332)
T ss_pred CeEEeeCCCCCcHHHH
Confidence 3799999999999965
No 290
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.18 E-value=0.49 Score=45.54 Aligned_cols=45 Identities=7% Similarity=0.090 Sum_probs=29.2
Q ss_pred cceeEEEecchhhhhhC----CChHHHHHHHhhccccccccCCceeecC
Q psy10680 204 NRITYLVLDEADRMLDM----GFEPQIRKIIQMTRTRDLCRGAEIVVAT 248 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~----~~~~~l~~il~~~~~~~~~~~~~~~saT 248 (537)
.++++||||=.|.+... +....+..+...++......++.++.++
T Consensus 129 ~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~s 177 (259)
T PF03796_consen 129 KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIALS 177 (259)
T ss_dssp TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEcc
Confidence 67899999999998764 3455666666655553333444455544
No 291
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.15 E-value=0.28 Score=54.43 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++++.||+|+|||..
T Consensus 208 ~n~LLvGppGvGKT~l 223 (758)
T PRK11034 208 NNPLLVGESGVGKTAI 223 (758)
T ss_pred CCeEEECCCCCCHHHH
Confidence 5999999999999975
No 292
>KOG0330|consensus
Probab=92.14 E-value=0.25 Score=48.77 Aligned_cols=75 Identities=35% Similarity=0.589 Sum_probs=62.7
Q ss_pred cCCceeecCchhHHHHhh-hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHH
Q psy10680 240 RGAEIVVATPGRLIDFLE-SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTIL 314 (537)
Q Consensus 240 ~~~~~~saTp~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (537)
.++.++.|||+++.+++. .....+.++.++++|+++++++..|.+.+..+.+.....-....++.....+...+.
T Consensus 178 kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~ 253 (476)
T KOG0330|consen 178 KKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQ 253 (476)
T ss_pred cCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHH
Confidence 455588999999999998 566788899999999999999999999999999988777777777776666665554
No 293
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=92.08 E-value=0.3 Score=46.24 Aligned_cols=86 Identities=12% Similarity=0.129 Sum_probs=63.2
Q ss_pred CcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhc--ccCCCCCceeEEEecCCCcchHHHHHHHHHHccccccH
Q psy10680 427 INVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGR--TARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPD 504 (537)
Q Consensus 427 ~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GR--agR~~~~g~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 504 (537)
..|+|+=+.++||+.++.+.+-.+...+..++++.|| || .-|.|-.+.|-++.++.-...+..+.+.-+ .+-+
T Consensus 136 ~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~~~~e----~lr~ 210 (239)
T PF10593_consen 136 NVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPGYEDLCRIYMPEELYDWFRHIAEAEE----ELRE 210 (239)
T ss_pred eEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCcccccceEEecCHHHHHHHHHHHHHHH----HHHH
Confidence 7899999999999999999999999999988888888 45 445666778888887765555555554444 5556
Q ss_pred HHHHHHhcCCCCChh
Q psy10680 505 RLLLLAAKNKPITTR 519 (537)
Q Consensus 505 ~l~~~~~~~~~~~~~ 519 (537)
.+..+.. ..+++.
T Consensus 211 ~i~~~~~--~~~tp~ 223 (239)
T PF10593_consen 211 EIKEMAN--NGLTPK 223 (239)
T ss_pred HHHHHHh--cCCCHH
Confidence 6665544 335553
No 294
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.06 E-value=0.34 Score=54.72 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.|.++.||+|+|||.+
T Consensus 209 ~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 209 NNPILTGEAGVGKTAV 224 (852)
T ss_pred CceeEECCCCCCHHHH
Confidence 4999999999999965
No 295
>PLN03025 replication factor C subunit; Provisional
Probab=92.02 E-value=0.4 Score=47.79 Aligned_cols=16 Identities=44% Similarity=0.518 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.+++++||+|+|||..
T Consensus 35 ~~lll~Gp~G~GKTtl 50 (319)
T PLN03025 35 PNLILSGPPGTGKTTS 50 (319)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4799999999999975
No 296
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=91.88 E-value=0.33 Score=53.01 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=14.1
Q ss_pred cceeEEEecchhhhhhC
Q psy10680 204 NRITYLVLDEADRMLDM 220 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~ 220 (537)
.+.+++||||+|+|...
T Consensus 118 gr~KVIIIDEah~LT~~ 134 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH 134 (830)
T ss_pred CCceEEEEeChhhCCHH
Confidence 46789999999998653
No 297
>KOG1133|consensus
Probab=91.88 E-value=0.12 Score=54.74 Aligned_cols=97 Identities=22% Similarity=0.238 Sum_probs=65.0
Q ss_pred CCCcEEEEe--cccccCCCcCC--ccEEEEecCCCC--------------------------------hhhhHhhhhccc
Q psy10680 425 GYINVLIAS--DVASRGLDVED--IKYVVNYDFPDN--------------------------------TENYVHRIGRTA 468 (537)
Q Consensus 425 g~~~iLvaT--~~l~~Gidi~~--~~~Vi~~d~p~s--------------------------------~~~~~Q~~GRag 468 (537)
|.-.+|+|. .-+++|||+.+ +++||..+.|-. ....-|.+|||=
T Consensus 686 g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAI 765 (821)
T KOG1133|consen 686 GRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAI 765 (821)
T ss_pred CCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 444566665 68899999975 788888886621 112468999999
Q ss_pred CCCCCceeEEEecCCCcchHHHHHHHHHHccccccHHHHHHHhcCCCCC-hhhhhhHhhhhhhh
Q psy10680 469 RSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPIT-TRQWKREYWRRKSS 531 (537)
Q Consensus 469 R~~~~g~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~ 531 (537)
|+.+.=.++++++.+-.+... -.+|.|+......+.... -.+--+.+|+.++.
T Consensus 766 RH~~DYA~i~LlD~RY~~p~~----------RKLp~WI~~~v~s~~~~G~~ir~~~~ff~~k~~ 819 (821)
T KOG1133|consen 766 RHRKDYASIYLLDKRYARPLS----------RKLPKWIRKRVHSKAGFGPAIRATRKFFRAKSL 819 (821)
T ss_pred hhhccceeEEEehhhhcCchh----------hhccHHHHhHhccccCccHHHHHHHHHHHHhcc
Confidence 998777788888875432111 178899887766666655 34445666666553
No 298
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.85 E-value=0.17 Score=50.15 Aligned_cols=31 Identities=32% Similarity=0.329 Sum_probs=24.2
Q ss_pred CChhhhhhhhc-cccCCcEEEEccCCCccccc
Q psy10680 46 PTSIQAQSWPI-CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 46 ~~~~Q~~ai~~-~~~~~~vli~apTGsGKT~~ 76 (537)
+++.|.+.+.. +..+++++++|+||||||..
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl 164 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL 164 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 45667777765 44667999999999999964
No 299
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.77 E-value=0.56 Score=48.72 Aligned_cols=35 Identities=17% Similarity=0.027 Sum_probs=24.7
Q ss_pred CCCCCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
|++...+-=-+.+..+..|.-++|.|+||+|||..
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~ 210 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTL 210 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHH
Confidence 44444444444555666778899999999999974
No 300
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.69 E-value=0.22 Score=47.78 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
=++|.||||||||.+
T Consensus 127 LILVTGpTGSGKSTT 141 (353)
T COG2805 127 LILVTGPTGSGKSTT 141 (353)
T ss_pred eEEEeCCCCCcHHHH
Confidence 588999999999976
No 301
>KOG0991|consensus
Probab=91.64 E-value=0.17 Score=46.63 Aligned_cols=16 Identities=44% Similarity=0.515 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.+.++.||+|+|||..
T Consensus 49 P~liisGpPG~GKTTs 64 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTS 64 (333)
T ss_pred CceEeeCCCCCchhhH
Confidence 4899999999999986
No 302
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.57 E-value=0.16 Score=49.72 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=29.2
Q ss_pred CCCCCChhhhhhhhccccCC-cEEEEccCCCccccc
Q psy10680 42 GYGKPTSIQAQSWPICLSGR-DLIGIAQTGSGKTLS 76 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~~~~~~-~vli~apTGsGKT~~ 76 (537)
.|...++-|...+..+.+.+ |++++|.||||||..
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl 189 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL 189 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH
Confidence 35678888988887777665 999999999999965
No 303
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.56 E-value=0.25 Score=48.23 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
++.++++||||+|||.+
T Consensus 194 ~~vi~~vGptGvGKTTt 210 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTT 210 (282)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45788999999999976
No 304
>KOG0741|consensus
Probab=91.32 E-value=0.85 Score=47.19 Aligned_cols=134 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEE--EEc
Q psy10680 61 RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIAL--VLA 138 (537)
Q Consensus 61 ~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l--il~ 138 (537)
+.+++.||+|+|||++ .--+-.++..+.-+-.+||.+| |+-
T Consensus 257 KGiLLyGPPGTGKTLi-------------------------------------ARqIGkMLNArePKIVNGPeIL~KYVG 299 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLI-------------------------------------ARQIGKMLNAREPKIVNGPEILNKYVG 299 (744)
T ss_pred eeEEEECCCCCChhHH-------------------------------------HHHHHHHhcCCCCcccCcHHHHHHhhc
Q ss_pred ccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhh
Q psy10680 139 PTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRML 218 (537)
Q Consensus 139 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~ 218 (537)
-+.+-+.........-....| .-+.+..|||||.|.+.
T Consensus 300 eSE~NvR~LFaDAEeE~r~~g------------------------------------------~~SgLHIIIFDEiDAIC 337 (744)
T KOG0741|consen 300 ESEENVRKLFADAEEEQRRLG------------------------------------------ANSGLHIIIFDEIDAIC 337 (744)
T ss_pred ccHHHHHHHHHhHHHHHHhhC------------------------------------------ccCCceEEEehhhHHHH
Q ss_pred hCC---------ChHHHHHHHhhccccccccCCceeecC-chhHHHHhhhCCcccccceeeeccc
Q psy10680 219 DMG---------FEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESGTTNVNRITYLVLDE 273 (537)
Q Consensus 219 ~~~---------~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~~~~~~~~~~~~~~~~~ 273 (537)
..- ....+..++....-.....++.++..| -..+.+-.--.+.+....-.+.+..
T Consensus 338 KqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPD 402 (744)
T KOG0741|consen 338 KQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPD 402 (744)
T ss_pred HhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCC
No 305
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.27 E-value=0.97 Score=50.49 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.|+++.||+|+|||..
T Consensus 204 ~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAI 219 (731)
T ss_pred CceEEECCCCCCHHHH
Confidence 4999999999999975
No 306
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.19 E-value=0.15 Score=45.83 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHhccCCcEEEeCCchhHHHHhcCcc--cccceeEEEecchhhhhh
Q psy10680 176 RDLCRGAEIVVATPGRLIDFLESGTT--NVNRITYLVLDEADRMLD 219 (537)
Q Consensus 176 ~~l~~~~~Ivv~Tp~~l~~~l~~~~~--~~~~l~liV~DE~h~~~~ 219 (537)
+.....++|||++...|++-...... ...+-.+|||||||++.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 44456799999999888764332222 223447999999999865
No 307
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.19 E-value=0.42 Score=58.81 Aligned_cols=32 Identities=28% Similarity=0.186 Sum_probs=27.8
Q ss_pred CCChhhhhhhhccccC--CcEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICLSG--RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~--~~vli~apTGsGKT~~ 76 (537)
.+++.|++|+..++.+ +-++|.|+.|+|||.+
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~ 1052 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTM 1052 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHh
Confidence 7899999999988765 4678899999999976
No 308
>KOG0734|consensus
Probab=91.10 E-value=0.43 Score=49.30 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=32.1
Q ss_pred cceeEEEecchhhhhhCCC-------hHHHHHHHhhccccccccCCceeecC--chhHHHHh
Q psy10680 204 NRITYLVLDEADRMLDMGF-------EPQIRKIIQMTRTRDLCRGAEIVVAT--PGRLIDFL 256 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~~-------~~~l~~il~~~~~~~~~~~~~~~saT--p~~~~~~l 256 (537)
...+.|+|||.|.+...-- ..-+..++..+.-.....++.++.|| |+.+-..+
T Consensus 395 ~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL 456 (752)
T KOG0734|consen 395 RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKAL 456 (752)
T ss_pred cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHh
Confidence 4578899999999875421 22334444444334455566688999 66554433
No 309
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.97 E-value=0.34 Score=58.23 Aligned_cols=32 Identities=28% Similarity=0.152 Sum_probs=28.3
Q ss_pred CCChhhhhhhhccccC--CcEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICLSG--RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~--~~vli~apTGsGKT~~ 76 (537)
.+++.|++|+..++.+ +-++|.|..|+|||.+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~ 1000 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ 1000 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH
Confidence 6899999999998875 5789999999999975
No 310
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.96 E-value=0.48 Score=48.48 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=27.8
Q ss_pred cceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHHHhhhC
Q psy10680 204 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG 259 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~~~ 259 (537)
.+.+++||||+|.|.... ...+.+.+..-+.... .++.++ +..+...+.+.
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~----fIL~a~~~~~llpTIrSR 167 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTV----WLLCAPSPEDVLPTIRSR 167 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCe----EEEEECChHHChHHHHhh
Confidence 567899999999996532 2233333333222222 255555 66555555543
No 311
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=90.96 E-value=0.26 Score=50.47 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=34.6
Q ss_pred cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccH
Q psy10680 62 DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTR 141 (537)
Q Consensus 62 ~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~ 141 (537)
++++.||||+|||.. +++|.+... +..+||+=|.-
T Consensus 1 H~lv~g~tGsGKt~~-----------------------------------~viP~ll~~----------~~s~vv~D~Kg 35 (384)
T cd01126 1 HVLVFAPTRSGKGVG-----------------------------------FVIPNLLTW----------PGSVVVLDPKG 35 (384)
T ss_pred CeeEecCCCCCCccE-----------------------------------EEccchhcC----------CCCEEEEccch
Confidence 478999999999999 555544322 23388899999
Q ss_pred HHHHHHHHHHHH
Q psy10680 142 ELAQQIQAVISI 153 (537)
Q Consensus 142 ~L~~q~~~~~~~ 153 (537)
++........+.
T Consensus 36 e~~~~t~~~r~~ 47 (384)
T cd01126 36 ENFELTSEHRRA 47 (384)
T ss_pred hHHHHHHHHHHH
Confidence 998877666553
No 312
>KOG0336|consensus
Probab=90.95 E-value=0.43 Score=47.42 Aligned_cols=78 Identities=51% Similarity=0.705 Sum_probs=63.2
Q ss_pred cCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHH
Q psy10680 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFL 317 (537)
Q Consensus 240 ~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (537)
+++.++.+||.++.+..-+....+..+.++++|+++++++.+|+++++.+.-....+-....-+....+....+....
T Consensus 342 rgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY 419 (629)
T KOG0336|consen 342 RGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSY 419 (629)
T ss_pred cCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHh
Confidence 455699999999999888888999999999999999999999999999998887766666665655555555554433
No 313
>PTZ00293 thymidine kinase; Provisional
Probab=90.94 E-value=0.46 Score=43.76 Aligned_cols=18 Identities=33% Similarity=0.202 Sum_probs=14.4
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|+=.++.||+++|||.-
T Consensus 3 ~G~i~vi~GpMfSGKTte 20 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTE 20 (211)
T ss_pred ceEEEEEECCCCChHHHH
Confidence 345568899999999974
No 314
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=90.87 E-value=0.51 Score=49.88 Aligned_cols=58 Identities=19% Similarity=0.132 Sum_probs=41.5
Q ss_pred CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEccc
Q psy10680 61 RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPT 140 (537)
Q Consensus 61 ~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 140 (537)
+.+++..|=|.|||.. ...-++..+... ...+..+++++++
T Consensus 23 ~~~~l~v~RkNGKS~l-----------------------------------~a~i~ly~l~~~----g~~~~~i~~~A~~ 63 (477)
T PF03354_consen 23 REVYLEVPRKNGKSTL-----------------------------------AAAIALYMLFLD----GEPGAEIYCAANT 63 (477)
T ss_pred EEEEEEEcCccCccHH-----------------------------------HHHHHHHHHhcC----CccCceEEEEeCC
Confidence 4688888999999976 333333333322 1236779999999
Q ss_pred HHHHHHHHHHHHHhccc
Q psy10680 141 RELAQQIQAVISIFSRT 157 (537)
Q Consensus 141 ~~L~~q~~~~~~~~~~~ 157 (537)
+.-+..+...++.+...
T Consensus 64 ~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 64 RDQAKIVFDEAKKMIEA 80 (477)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999988876654
No 315
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.85 E-value=0.52 Score=47.88 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.+++|.||+|+|||.+
T Consensus 41 ~~i~I~G~~GtGKT~l 56 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV 56 (365)
T ss_pred CcEEEECCCCCCHHHH
Confidence 5899999999999976
No 316
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.78 E-value=0.34 Score=53.87 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.6
Q ss_pred cceeEEEecchhhhhh
Q psy10680 204 NRITYLVLDEADRMLD 219 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~ 219 (537)
.+.+++||||+|+|..
T Consensus 118 gk~KViIIDEAh~LT~ 133 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR 133 (944)
T ss_pred CCcEEEEEechHhcCH
Confidence 4678999999999864
No 317
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.75 E-value=0.53 Score=48.69 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.++.++++||||+|||.+
T Consensus 220 ~~~~i~~vGptGvGKTTt 237 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTT 237 (424)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356789999999999976
No 318
>KOG0342|consensus
Probab=90.74 E-value=0.43 Score=48.61 Aligned_cols=77 Identities=34% Similarity=0.560 Sum_probs=62.8
Q ss_pred CCceeecCchhHHHHhhhCCcccc-cceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHH
Q psy10680 241 GAEIVVATPGRLIDFLESGTTNVN-RITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFL 317 (537)
Q Consensus 241 ~~~~~saTp~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (537)
.+.++.|||+++.+++++....+. ....+++|+++++++.||+..+.+++......-....++.....+.+.+....
T Consensus 205 ~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~ 282 (543)
T KOG0342|consen 205 GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGA 282 (543)
T ss_pred cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHh
Confidence 455999999999999998654333 34578999999999999999999999999888888888877777776665544
No 319
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.71 E-value=0.6 Score=50.36 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+|++||.|+|||.+
T Consensus 39 AyLF~GPpGvGKTTl 53 (702)
T PRK14960 39 AYLFTGTRGVGKTTI 53 (702)
T ss_pred EEEEECCCCCCHHHH
Confidence 569999999999976
No 320
>PRK06904 replicative DNA helicase; Validated
Probab=90.71 E-value=1.2 Score=46.85 Aligned_cols=25 Identities=20% Similarity=0.019 Sum_probs=19.2
Q ss_pred hhhhccccCCcEEEEccCCCccccc
Q psy10680 52 QSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 52 ~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
+.+..+..|.=++|.|.||.|||..
T Consensus 213 ~~t~Gl~~G~LiiIaarPg~GKTaf 237 (472)
T PRK06904 213 KKTAGLQPSDLIIVAARPSMGKTTF 237 (472)
T ss_pred HHHhccCCCcEEEEEeCCCCChHHH
Confidence 3344566677889999999999974
No 321
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.70 E-value=0.49 Score=49.66 Aligned_cols=15 Identities=33% Similarity=0.355 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.||+|+|||..
T Consensus 38 ~~Lf~GPpGtGKTTl 52 (472)
T PRK14962 38 AYIFAGPRGTGKTTV 52 (472)
T ss_pred EEEEECCCCCCHHHH
Confidence 479999999999976
No 322
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.67 E-value=0.61 Score=46.97 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=15.7
Q ss_pred cccCC---cEEEEccCCCccccc
Q psy10680 57 CLSGR---DLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~---~vli~apTGsGKT~~ 76 (537)
+.+|+ ..++.||.|+|||..
T Consensus 39 ~~~grl~ha~L~~G~~G~GKttl 61 (351)
T PRK09112 39 YREGKLHHALLFEGPEGIGKATL 61 (351)
T ss_pred HHcCCCCeeEeeECCCCCCHHHH
Confidence 33554 589999999999965
No 323
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=90.65 E-value=1.3 Score=47.66 Aligned_cols=133 Identities=18% Similarity=0.153 Sum_probs=74.4
Q ss_pred cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEc
Q psy10680 59 SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLA 138 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 138 (537)
..+-.++..|=-.|||+. +.+.+..++..- .|-++++.+
T Consensus 253 kqk~tVflVPRR~GKTwi------------------------------------vv~iI~~ll~s~-----~Gi~IgytA 291 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWF------------------------------------LVPLIALALATF-----RGIKIGYTA 291 (738)
T ss_pred hccceEEEecccCCchhh------------------------------------HHHHHHHHHHhC-----CCCEEEEEc
Confidence 346789999999999996 234555444221 166799999
Q ss_pred ccHHHHHHHHHHHHHhcccc--eeeEEEEEcCcchhHhHHHhccC--CcEEEeCCchhHHHHhcCcccccceeEEEecch
Q psy10680 139 PTRELAQQIQAVISIFSRTM--RIRHACLYGGTSKMYQTRDLCRG--AEIVVATPGRLIDFLESGTTNVNRITYLVLDEA 214 (537)
Q Consensus 139 Pt~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~--~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~ 214 (537)
|.+..++.+.++++...... +-.+....| ... .-....+ ..|.+++. -..+...=..++++|+|||
T Consensus 292 H~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEA 361 (738)
T PHA03368 292 HIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEA 361 (738)
T ss_pred CcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEech
Confidence 99999999999998765532 111111122 110 0001111 23444421 1122233457999999999
Q ss_pred hhhhhCCChHHHHHHHhhccccccccCCceeecC
Q psy10680 215 DRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT 248 (537)
Q Consensus 215 h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT 248 (537)
+.+.+. .+..++-.+... ..+..++|+|
T Consensus 362 qFIk~~----al~~ilp~l~~~--n~k~I~ISS~ 389 (738)
T PHA03368 362 NFIRPD----AVQTIMGFLNQT--NCKIIFVSST 389 (738)
T ss_pred hhCCHH----HHHHHHHHHhcc--CccEEEEecC
Confidence 998764 344444332221 2223366666
No 324
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.59 E-value=0.49 Score=46.74 Aligned_cols=20 Identities=30% Similarity=0.170 Sum_probs=16.3
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+.+|+-+.|.+|+|+|||..
T Consensus 52 lp~G~iteI~G~~GsGKTtL 71 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTL 71 (321)
T ss_pred CcCCeEEEEECCCCCCHHHH
Confidence 44556789999999999975
No 325
>KOG0328|consensus
Probab=90.59 E-value=0.47 Score=44.84 Aligned_cols=72 Identities=35% Similarity=0.512 Sum_probs=62.2
Q ss_pred cCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHH
Q psy10680 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311 (537)
Q Consensus 240 ~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (537)
.+.+.+|.||+++.+++....++...+..+++|+++++++.+|..++..+.+......+...++........
T Consensus 144 ~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eil 215 (400)
T KOG0328|consen 144 YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEIL 215 (400)
T ss_pred ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHH
Confidence 455699999999999999999999999999999999999999999999999998877777777765554433
No 326
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.57 E-value=0.27 Score=51.54 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+..|++||.|+|||.+
T Consensus 36 ha~Lf~Gp~G~GKTT~ 51 (491)
T PRK14964 36 QSILLVGASGVGKTTC 51 (491)
T ss_pred ceEEEECCCCccHHHH
Confidence 3699999999999976
No 327
>PRK14974 cell division protein FtsY; Provisional
Probab=90.52 E-value=0.57 Score=46.73 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.7
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.-+++.||+|+|||.+
T Consensus 141 ~vi~~~G~~GvGKTTt 156 (336)
T PRK14974 141 VVIVFVGVNGTGKTTT 156 (336)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 3578899999999975
No 328
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.43 E-value=0.21 Score=49.94 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=17.5
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
++..+.+++|+||||||||..
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl 178 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM 178 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH
Confidence 344668999999999999975
No 329
>KOG0341|consensus
Probab=90.31 E-value=0.25 Score=48.64 Aligned_cols=74 Identities=42% Similarity=0.692 Sum_probs=63.2
Q ss_pred cCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHH
Q psy10680 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTI 313 (537)
Q Consensus 240 ~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (537)
+++.++.|||+++.+++......+..+.++++|+++++.+.+|..+++.+.......-....++.....+.+.+
T Consensus 301 ~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~F 374 (610)
T KOG0341|consen 301 RGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNF 374 (610)
T ss_pred cCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHH
Confidence 56679999999999999999999999999999999999999999999999998877777777766555554443
No 330
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=90.13 E-value=1.2 Score=46.55 Aligned_cols=25 Identities=20% Similarity=-0.023 Sum_probs=19.0
Q ss_pred hhhhccccCCcEEEEccCCCccccc
Q psy10680 52 QSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 52 ~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
+.+..+..|.-++|.|+||+|||..
T Consensus 187 ~~~~G~~~G~l~vi~g~pg~GKT~~ 211 (434)
T TIGR00665 187 KLTSGLQPSDLIILAARPSMGKTAF 211 (434)
T ss_pred hhcCCCCCCeEEEEEeCCCCChHHH
Confidence 3334456667889999999999974
No 331
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.11 E-value=0.14 Score=49.44 Aligned_cols=17 Identities=47% Similarity=0.626 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
..|+++.||||||||+.
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 35899999999999975
No 332
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.10 E-value=0.12 Score=48.77 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=12.4
Q ss_pred EEEEccCCCccccc
Q psy10680 63 LIGIAQTGSGKTLS 76 (537)
Q Consensus 63 vli~apTGsGKT~~ 76 (537)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999976
No 333
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.08 E-value=2.3 Score=40.16 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+++.|++|+|||..
T Consensus 24 ~g~~~~i~G~~GsGKt~l 41 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVL 41 (234)
T ss_pred CCcEEEEECCCCCChHHH
Confidence 456789999999999975
No 334
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.06 E-value=0.36 Score=50.96 Aligned_cols=49 Identities=29% Similarity=0.398 Sum_probs=37.1
Q ss_pred CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEccc
Q psy10680 61 RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPT 140 (537)
Q Consensus 61 ~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 140 (537)
.++++.||||||||.. +++|.+-.. +.-+||.=|-
T Consensus 45 ~h~lvig~tgSGKt~~-----------------------------------~viP~ll~~----------~~s~iV~D~K 79 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTS-----------------------------------FVIPNLLNY----------PGSMIVTDPK 79 (469)
T ss_pred eEEEEEeCCCCCccce-----------------------------------eeHhHHHhc----------cCCEEEEECC
Confidence 4799999999999999 666665321 1238889999
Q ss_pred HHHHHHHHHHHHHh
Q psy10680 141 RELAQQIQAVISIF 154 (537)
Q Consensus 141 ~~L~~q~~~~~~~~ 154 (537)
-+|........+..
T Consensus 80 gEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 80 GELYEKTAGYRKKR 93 (469)
T ss_pred CcHHHHHHHHHHHC
Confidence 99988877766644
No 335
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=90.04 E-value=0.073 Score=47.58 Aligned_cols=87 Identities=16% Similarity=0.157 Sum_probs=31.1
Q ss_pred ceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEe
Q psy10680 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVL 211 (537)
Q Consensus 132 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~ 211 (537)
..++|.+|+.+-+....+.+.......+++...... ..........+..|-...|+.+.. .....+++||
T Consensus 27 ~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~i~f~~Pd~l~~-------~~~~~DlliV 96 (177)
T PF05127_consen 27 IRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLRFNKQRIEFVAPDELLA-------EKPQADLLIV 96 (177)
T ss_dssp --EEEE-SS--S-HHHHHCC-----------------------------CCC--B--HHHHCC-------T----SCEEE
T ss_pred ceEEEecCCHHHHHHHHHHHHhhccccccccccccc---cccccccccccceEEEECCHHHHh-------CcCCCCEEEE
Confidence 358999999998888777665444433333200000 000000001234455555544332 1223589999
Q ss_pred cchhhhhhCCChHHHHHHHhh
Q psy10680 212 DEADRMLDMGFEPQIRKIIQM 232 (537)
Q Consensus 212 DE~h~~~~~~~~~~l~~il~~ 232 (537)
|||=.+. -+.+..++..
T Consensus 97 DEAAaIp----~p~L~~ll~~ 113 (177)
T PF05127_consen 97 DEAAAIP----LPLLKQLLRR 113 (177)
T ss_dssp CTGGGS-----HHHHHHHHCC
T ss_pred echhcCC----HHHHHHHHhh
Confidence 9998763 2455555433
No 336
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.02 E-value=0.82 Score=47.33 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++++.||+|+|||..
T Consensus 37 ~~ilL~GppGtGKTtL 52 (413)
T PRK13342 37 SSMILWGPPGTGKTTL 52 (413)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3799999999999975
No 337
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.00 E-value=0.44 Score=51.43 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=42.4
Q ss_pred CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEccc
Q psy10680 61 RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPT 140 (537)
Q Consensus 61 ~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 140 (537)
.++++.||||||||.. +++|.+-.. +.-+||+=|.
T Consensus 159 ~hvLviapTgSGKg~g-----------------------------------~VIPnLL~~----------~~S~VV~DpK 193 (606)
T PRK13897 159 QHALLFAPTGSGKGVG-----------------------------------FVIPNLLFW----------EDSVVVHDIK 193 (606)
T ss_pred ceEEEEcCCCCCcceE-----------------------------------EehhhHHhC----------CCCEEEEeCc
Confidence 5899999999999999 666666543 2238899999
Q ss_pred HHHHHHHHHHHHHhcccceeeEEEEE
Q psy10680 141 RELAQQIQAVISIFSRTMRIRHACLY 166 (537)
Q Consensus 141 ~~L~~q~~~~~~~~~~~~~~~~~~~~ 166 (537)
-++....+...++. |.+|..+.
T Consensus 194 GEl~~~Ta~~R~~~----G~~V~vfd 215 (606)
T PRK13897 194 LENYELTSGWREKQ----GQKVFVWE 215 (606)
T ss_pred HHHHHHHHHHHHHC----CCeEEEEe
Confidence 99998888777653 44444443
No 338
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=89.92 E-value=0.93 Score=41.46 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=23.8
Q ss_pred ceeEEEecchhhhhhCCCh--HHHHHHHhhccc-cccccCCceeecCchhHHHHhhh
Q psy10680 205 RITYLVLDEADRMLDMGFE--PQIRKIIQMTRT-RDLCRGAEIVVATPGRLIDFLES 258 (537)
Q Consensus 205 ~l~liV~DE~h~~~~~~~~--~~l~~il~~~~~-~~~~~~~~~~saTp~~~~~~l~~ 258 (537)
.-.+||+||||........ ......+..+.. +.....+.+++-.|..+...+..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~ 135 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRD 135 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHH
Confidence 5579999999997654322 122333333322 32222333444446655555544
No 339
>KOG0338|consensus
Probab=89.83 E-value=0.4 Score=49.07 Aligned_cols=76 Identities=38% Similarity=0.617 Sum_probs=64.8
Q ss_pred CceeecCchhHHHHhhhCC-cccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHH
Q psy10680 242 AEIVVATPGRLIDFLESGT-TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFL 317 (537)
Q Consensus 242 ~~~~saTp~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (537)
+.++.|||+++.+++.+.+ +.+..+..+++|++++++..+|..++..++....++-+...++....+..+.+...-
T Consensus 303 PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slS 379 (691)
T KOG0338|consen 303 PDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLS 379 (691)
T ss_pred CCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhh
Confidence 3499999999999998754 667889999999999999999999999999999888888888877777766665543
No 340
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.80 E-value=0.92 Score=48.14 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.2
Q ss_pred cceeEEEecchhhhhhC
Q psy10680 204 NRITYLVLDEADRMLDM 220 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~ 220 (537)
.+.+++||||+|++...
T Consensus 118 ~~~kV~iIDE~~~ls~~ 134 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH 134 (509)
T ss_pred CCcEEEEEEChHhcCHH
Confidence 46789999999998754
No 341
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.77 E-value=0.89 Score=48.91 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=14.8
Q ss_pred ccceeEEEecchhhhhhC
Q psy10680 203 VNRITYLVLDEADRMLDM 220 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~~ 220 (537)
..+.+++||||+|.+...
T Consensus 116 ~~~~KVvIIDEah~Lt~~ 133 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA 133 (584)
T ss_pred cCCceEEEEECCCcCCHH
Confidence 356889999999998654
No 342
>PRK05748 replicative DNA helicase; Provisional
Probab=89.71 E-value=1.7 Score=45.55 Aligned_cols=35 Identities=17% Similarity=-0.029 Sum_probs=23.4
Q ss_pred CCCCCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
|++...+.--+.+..+..|.-++|.|+||.|||..
T Consensus 185 gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~ 219 (448)
T PRK05748 185 GIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAF 219 (448)
T ss_pred CccCChHHHHHhcCCCCCCceEEEEeCCCCCchHH
Confidence 44433333334444566667899999999999974
No 343
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.56 E-value=0.32 Score=44.62 Aligned_cols=14 Identities=36% Similarity=0.515 Sum_probs=12.7
Q ss_pred EEEEccCCCccccc
Q psy10680 63 LIGIAQTGSGKTLS 76 (537)
Q Consensus 63 vli~apTGsGKT~~ 76 (537)
++++||||+|||.+
T Consensus 4 i~lvGptGvGKTTt 17 (196)
T PF00448_consen 4 IALVGPTGVGKTTT 17 (196)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCchHhH
Confidence 67899999999986
No 344
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=89.46 E-value=0.78 Score=48.49 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=13.9
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.++++||.|+|||.+
T Consensus 45 a~Lf~Gp~G~GKTT~ 59 (507)
T PRK06645 45 GYLLTGIRGVGKTTS 59 (507)
T ss_pred eEEEECCCCCCHHHH
Confidence 689999999999976
No 345
>KOG1807|consensus
Probab=89.46 E-value=0.74 Score=49.52 Aligned_cols=72 Identities=22% Similarity=0.043 Sum_probs=53.5
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.+..-|..|.+..+..+-.|++||+|+|||++ -+-++..++.+.
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~v------------------------------------tlkav~tLL~n~ 421 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLV------------------------------------TLKAVDTLLLNS 421 (1025)
T ss_pred eecHHHHHHHHHHhhhhhheeecCCCCCceee------------------------------------hHHHHHHHHhcc
Confidence 44556999999999989999999999999998 444556665543
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHH
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISI 153 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 153 (537)
.-- .....++++|-|..-+.|....+..
T Consensus 422 s~~-~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 422 SGY-TEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred ccc-ccccceeeeehhhHHHHHHHHHHHh
Confidence 211 1123478999999999998877764
No 346
>PRK08506 replicative DNA helicase; Provisional
Probab=89.31 E-value=1.3 Score=46.65 Aligned_cols=35 Identities=20% Similarity=0.011 Sum_probs=22.7
Q ss_pred CCCCCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
|++...+.--..+..+..|.-+++.|.||.|||..
T Consensus 174 Gi~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~f 208 (472)
T PRK08506 174 GLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTL 208 (472)
T ss_pred cccCChHHHHhhcCCCCCCceEEEEcCCCCChHHH
Confidence 34333333333444556667889999999999974
No 347
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=89.29 E-value=1.1 Score=44.90 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=22.7
Q ss_pred Chhhhhhhhcccc--C---CcEEEEccCCCccccc
Q psy10680 47 TSIQAQSWPICLS--G---RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 47 ~~~Q~~ai~~~~~--~---~~vli~apTGsGKT~~ 76 (537)
+|.|...|..+.+ + +..++.||.|.||+..
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~l 37 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDF 37 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHH
Confidence 5677777766553 3 3688999999999975
No 348
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.23 E-value=0.61 Score=50.60 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=14.3
Q ss_pred cceeEEEecchhhhhhC
Q psy10680 204 NRITYLVLDEADRMLDM 220 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~ 220 (537)
.+.+++||||+|+|...
T Consensus 118 g~~KV~IIDEah~Ls~~ 134 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH 134 (647)
T ss_pred CCCEEEEEechHhCCHH
Confidence 56889999999998753
No 349
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.22 E-value=0.58 Score=50.35 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=14.7
Q ss_pred ccceeEEEecchhhhhhC
Q psy10680 203 VNRITYLVLDEADRMLDM 220 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~~ 220 (537)
..+.+++||||+|+|...
T Consensus 122 ~gr~KViIIDEah~Ls~~ 139 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH 139 (700)
T ss_pred cCCceEEEEEChHhcCHH
Confidence 356889999999998754
No 350
>PRK04195 replication factor C large subunit; Provisional
Probab=89.17 E-value=1.1 Score=47.58 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+.+++.||+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999975
No 351
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.16 E-value=0.7 Score=49.26 Aligned_cols=68 Identities=43% Similarity=0.690 Sum_probs=59.1
Q ss_pred CceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhh
Q psy10680 242 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISER 309 (537)
Q Consensus 242 ~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (537)
+.++.|||+++.+++....+....+.++++|+++++++.+|.+.+..+......+.....++......
T Consensus 151 ~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~ 218 (513)
T COG0513 151 VDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDD 218 (513)
T ss_pred CCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHH
Confidence 55999999999999999889999999999999999999999999999999988765666666555553
No 352
>PRK09354 recA recombinase A; Provisional
Probab=89.09 E-value=0.71 Score=46.09 Aligned_cols=18 Identities=33% Similarity=0.241 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|+-+.|.||+|+|||..
T Consensus 59 ~G~IteI~G~~GsGKTtL 76 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTL 76 (349)
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345788999999999975
No 353
>PRK07004 replicative DNA helicase; Provisional
Probab=89.02 E-value=1.3 Score=46.47 Aligned_cols=35 Identities=17% Similarity=-0.017 Sum_probs=23.5
Q ss_pred CCCCCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
|++...+.--+.+..+..|.-++|.|.||+|||..
T Consensus 195 gi~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~ 229 (460)
T PRK07004 195 GTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAF 229 (460)
T ss_pred CccCCcHHhcccccCCCCCceEEEEeCCCCCccHH
Confidence 44333333344444566677889999999999974
No 354
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=88.99 E-value=0.99 Score=44.79 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=21.9
Q ss_pred Chhhhhhhhccc----cCC---cEEEEccCCCccccc
Q psy10680 47 TSIQAQSWPICL----SGR---DLIGIAQTGSGKTLS 76 (537)
Q Consensus 47 ~~~Q~~ai~~~~----~~~---~vli~apTGsGKT~~ 76 (537)
+|.|..+|..+. +|+ ..++.||.|.||+..
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~l 40 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQL 40 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHH
Confidence 566666665554 443 678999999999875
No 355
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=88.78 E-value=0.62 Score=43.74 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=16.7
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+-.|..+++.||+|+|||..
T Consensus 16 ip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp EETTSEEEEEESTTSSHHHH
T ss_pred CCCCcEEEEEeCCCCCcHHH
Confidence 34567899999999999975
No 356
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.75 E-value=1.5 Score=44.59 Aligned_cols=15 Identities=27% Similarity=0.240 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.||+|+|||..
T Consensus 40 ~~L~~Gp~G~GKTtl 54 (363)
T PRK14961 40 AWLLSGTRGVGKTTI 54 (363)
T ss_pred EEEEecCCCCCHHHH
Confidence 368999999999976
No 357
>PRK05973 replicative DNA helicase; Provisional
Probab=88.72 E-value=0.73 Score=43.44 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
.+|| ..+..-.+..|.-++|.|++|+|||..
T Consensus 50 ~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~l 80 (237)
T PRK05973 50 ATTP-AEELFSQLKPGDLVLLGARPGHGKTLL 80 (237)
T ss_pred CCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHH
Confidence 4445 333555677788899999999999975
No 358
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.41 E-value=0.63 Score=44.35 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=17.9
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
.+-.|+.+++.||.|+|||..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHH
Confidence 345788999999999999964
No 359
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.41 E-value=0.46 Score=51.12 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..+|++||.|+|||.+
T Consensus 39 ha~Lf~GPpG~GKTti 54 (624)
T PRK14959 39 PAYLFSGTRGVGKTTI 54 (624)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3688999999999986
No 360
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.39 E-value=1.2 Score=48.26 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=14.3
Q ss_pred ccceeEEEecchhhhhh
Q psy10680 203 VNRITYLVLDEADRMLD 219 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~ 219 (537)
..+.+++||||+|++..
T Consensus 117 ~~~~KVvIIdev~~Lt~ 133 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST 133 (576)
T ss_pred cCCceEEEEEChhhCCH
Confidence 45689999999999865
No 361
>PRK08840 replicative DNA helicase; Provisional
Probab=88.38 E-value=2.2 Score=44.71 Aligned_cols=35 Identities=17% Similarity=-0.008 Sum_probs=24.6
Q ss_pred CCCCCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
|+++..+.--..+..+..|.-+++.|.||.|||..
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTaf 233 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTF 233 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHH
Confidence 44444444445555666777889999999999974
No 362
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=88.34 E-value=1.6 Score=43.63 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=23.8
Q ss_pred CChhhhhhhhccc----cCC---cEEEEccCCCccccc
Q psy10680 46 PTSIQAQSWPICL----SGR---DLIGIAQTGSGKTLS 76 (537)
Q Consensus 46 ~~~~Q~~ai~~~~----~~~---~vli~apTGsGKT~~ 76 (537)
.+|.|..+|..+. +|+ -.++.||.|.||+..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~l 40 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDAL 40 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHH
Confidence 5677888887665 343 678999999999875
No 363
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.23 E-value=1.1 Score=45.53 Aligned_cols=31 Identities=6% Similarity=0.117 Sum_probs=22.8
Q ss_pred ceeEEEecchhhhhhC-CChHHHHHHHhhccc
Q psy10680 205 RITYLVLDEADRMLDM-GFEPQIRKIIQMTRT 235 (537)
Q Consensus 205 ~l~liV~DE~h~~~~~-~~~~~l~~il~~~~~ 235 (537)
+++++++|+++.+..+ .....+.+++..+..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~ 206 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE 206 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh
Confidence 6899999999998765 345566666666655
No 364
>KOG0058|consensus
Probab=88.18 E-value=0.98 Score=48.64 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=28.6
Q ss_pred cccceeEEEecchhhhhhCCChHHHHHHHhhccccc
Q psy10680 202 NVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRD 237 (537)
Q Consensus 202 ~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~ 237 (537)
.+++...+|+|||=-.+|...+..+.+.++......
T Consensus 619 Llr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~r 654 (716)
T KOG0058|consen 619 LLRNPRVLILDEATSALDAESEYLVQEALDRLMQGR 654 (716)
T ss_pred HhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCC
Confidence 467899999999999998877777777777665543
No 365
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.04 E-value=1.4 Score=47.73 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+|++||.|+|||.+
T Consensus 40 a~Lf~Gp~G~GKTtl 54 (585)
T PRK14950 40 AYLFTGPRGVGKTST 54 (585)
T ss_pred EEEEECCCCCCHHHH
Confidence 469999999999976
No 366
>KOG0739|consensus
Probab=88.04 E-value=0.16 Score=48.39 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=46.9
Q ss_pred CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEc
Q psy10680 61 RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLA 138 (537)
Q Consensus 61 ~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 138 (537)
+.+++-+|+|+||++.+ --+..=-++-|+-.++++=.++||+-++..+.-++.+... +.|.+|||=
T Consensus 167 rgiLLyGPPGTGKSYLA--KAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe----------~kPSIIFiD 232 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLA--KAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARE----------NKPSIIFID 232 (439)
T ss_pred eeEEEeCCCCCcHHHHH--HHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHh----------cCCcEEEee
Confidence 36999999999999541 1222334577888899999999999999776665554332 255577763
No 367
>KOG2228|consensus
Probab=87.96 E-value=3.3 Score=40.64 Aligned_cols=44 Identities=16% Similarity=0.331 Sum_probs=27.2
Q ss_pred hHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc
Q psy10680 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT 235 (537)
Q Consensus 192 l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~ 235 (537)
++..|+++....+.-=..|+||+|.......--.++++++....
T Consensus 124 lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs 167 (408)
T KOG2228|consen 124 LLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQS 167 (408)
T ss_pred HHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhh
Confidence 34444543333333346788999987776666677777777664
No 368
>PRK10263 DNA translocase FtsK; Provisional
Probab=87.87 E-value=0.88 Score=52.48 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=26.2
Q ss_pred eEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC
Q psy10680 207 TYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT 248 (537)
Q Consensus 207 ~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT 248 (537)
-+|||||++.+... ....+...+..+-......+++++.+|
T Consensus 1142 IVVIIDE~AdLm~~-~~kevE~lI~rLAqkGRAaGIHLILAT 1182 (1355)
T PRK10263 1142 IVVLVDEFADLMMT-VGKKVEELIARLAQKARAAGIHLVLAT 1182 (1355)
T ss_pred EEEEEcChHHHHhh-hhHHHHHHHHHHHHHhhhcCeEEEEEe
Confidence 47999999887643 334555555444444444566688888
No 369
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.86 E-value=1.4 Score=48.67 Aligned_cols=17 Identities=41% Similarity=0.501 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
++-+.++||||+|||.+
T Consensus 185 g~Vi~lVGpnGvGKTTT 201 (767)
T PRK14723 185 GGVLALVGPTGVGKTTT 201 (767)
T ss_pred CeEEEEECCCCCcHHHH
Confidence 34578999999999976
No 370
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=87.86 E-value=0.34 Score=48.39 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.5
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..+.+++|+|+||||||..
T Consensus 158 ~~~~nili~G~tgSGKTTl 176 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTF 176 (332)
T ss_pred HcCCcEEEECCCCCCHHHH
Confidence 3567999999999999974
No 371
>KOG0730|consensus
Probab=87.73 E-value=0.96 Score=48.06 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=34.2
Q ss_pred eecCCcceeeehhhhhhccccc--CCCCCCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 19 FRSGYINVLIASDVASRGLGKN--SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~--~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
.+...|+..+=-+++.+.|.+. ...+.|-.+.+-. +..-+.||+.||+|+|||+.
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~l 484 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLL 484 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHH
Confidence 3556777777555555555321 3344444444443 23447899999999999986
No 372
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=87.73 E-value=1.5 Score=43.35 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=24.0
Q ss_pred CCChhhhhhhhccc----cCC---cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICL----SGR---DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~----~~~---~vli~apTGsGKT~~ 76 (537)
.++|.|...|..+. +++ ..+++||.|.||+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~l 41 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESL 41 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH
Confidence 45677777776655 343 689999999999865
No 373
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.51 E-value=0.93 Score=47.68 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.6
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|+.+.++||||+|||..
T Consensus 347 l~~G~vIaLVGPtGvGKTTt 366 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTT 366 (559)
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34567889999999999976
No 374
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=87.40 E-value=0.69 Score=43.87 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.2
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..|..++|.||+|+|||..
T Consensus 19 ~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred cCCeEEEEEcCCCCCHHHH
Confidence 3567899999999999975
No 375
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=87.20 E-value=0.84 Score=51.20 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=27.1
Q ss_pred cceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecC-chhHHHHhhh
Q psy10680 204 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLES 258 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saT-p~~~~~~l~~ 258 (537)
.+.+++||||+|+|.... ...+.++++..+....+ ++..| +..+...+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~f----Il~tt~~~kLl~TIrS 169 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKF----IFATTEPDKVIGTIRS 169 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEE----EEEeCChhhhhHHHHh
Confidence 568999999999997532 22333333333322222 33444 5555544544
No 376
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=87.18 E-value=1.5 Score=47.34 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=13.8
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+|++||.|+|||.+
T Consensus 48 a~L~~Gp~GvGKTt~ 62 (598)
T PRK09111 48 AFMLTGVRGVGKTTT 62 (598)
T ss_pred eEEEECCCCCCHHHH
Confidence 689999999999976
No 377
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=87.16 E-value=0.8 Score=50.06 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=34.6
Q ss_pred CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEccc
Q psy10680 61 RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPT 140 (537)
Q Consensus 61 ~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 140 (537)
.++++.||||||||.. +++|.+-.. ...+||+=|.
T Consensus 140 ~hvlviApTgSGKgvg-----------------------------------~VIPnLL~~----------~gS~VV~DpK 174 (670)
T PRK13850 140 PHSLVVAPTRAGKGVG-----------------------------------VVIPTLLTF----------KGSVIALDVK 174 (670)
T ss_pred ceEEEEecCCCCceee-----------------------------------ehHhHHhcC----------CCCEEEEeCC
Confidence 4899999999999999 555554432 1237778888
Q ss_pred HHHHHHHHHHHHH
Q psy10680 141 RELAQQIQAVISI 153 (537)
Q Consensus 141 ~~L~~q~~~~~~~ 153 (537)
-++........+.
T Consensus 175 GE~~~~Ta~~R~~ 187 (670)
T PRK13850 175 GELFELTSRARKA 187 (670)
T ss_pred chHHHHHHHHHHh
Confidence 8887776665553
No 378
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=87.14 E-value=0.48 Score=46.82 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++++.||+|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999965
No 379
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=87.13 E-value=1.3 Score=45.17 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=18.6
Q ss_pred hccccCCcEEEEccCCCccccc
Q psy10680 55 PICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 55 ~~~~~~~~vli~apTGsGKT~~ 76 (537)
+.+.++.|++..||+|+|||..
T Consensus 204 ~fve~~~Nli~lGp~GTGKThl 225 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYI 225 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHH
Confidence 4455778999999999999976
No 380
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=87.06 E-value=1.5 Score=48.59 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++++.||+|+|||..
T Consensus 53 ~slLL~GPpGtGKTTL 68 (725)
T PRK13341 53 GSLILYGPPGVGKTTL 68 (725)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3899999999999975
No 381
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.98 E-value=1.8 Score=47.14 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..+|++||.|+|||.+
T Consensus 39 ~a~Lf~Gp~G~GKttl 54 (620)
T PRK14948 39 PAYLFTGPRGTGKTSS 54 (620)
T ss_pred ceEEEECCCCCChHHH
Confidence 4679999999999976
No 382
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=86.91 E-value=1.1 Score=48.95 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=34.8
Q ss_pred CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEccc
Q psy10680 61 RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPT 140 (537)
Q Consensus 61 ~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 140 (537)
.++++.||||||||.. +++|.+... +..+||+=|.
T Consensus 176 ~HvlviapTgSGKgvg-----------------------------------~ViPnLL~~----------~~S~VV~D~K 210 (636)
T PRK13880 176 EHVLTYAPTRSGKGVG-----------------------------------LVVPTLLSW----------GHSSVITDLK 210 (636)
T ss_pred ceEEEEecCCCCCceE-----------------------------------EEccchhhC----------CCCEEEEeCc
Confidence 5899999999999999 566655432 2338889999
Q ss_pred HHHHHHHHHHHH
Q psy10680 141 RELAQQIQAVIS 152 (537)
Q Consensus 141 ~~L~~q~~~~~~ 152 (537)
-++..-.+...+
T Consensus 211 GE~~~~Tag~R~ 222 (636)
T PRK13880 211 GELWALTAGWRQ 222 (636)
T ss_pred HHHHHHHHHHHH
Confidence 998766655543
No 383
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=86.90 E-value=0.37 Score=48.05 Aligned_cols=16 Identities=25% Similarity=0.150 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+.+++.||+|+|||+.
T Consensus 149 lgllL~GPPGcGKTll 164 (413)
T PLN00020 149 LILGIWGGKGQGKSFQ 164 (413)
T ss_pred eEEEeeCCCCCCHHHH
Confidence 4688999999999976
No 384
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.88 E-value=0.7 Score=44.58 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=22.4
Q ss_pred Chhhhhhhhcccc-C-CcEEEEccCCCccccc
Q psy10680 47 TSIQAQSWPICLS-G-RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 47 ~~~Q~~ai~~~~~-~-~~vli~apTGsGKT~~ 76 (537)
.+.|.+.+..+.. . ..+++.||||||||..
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT 96 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH
Confidence 4567777765553 2 3689999999999975
No 385
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=86.81 E-value=1.9 Score=43.64 Aligned_cols=15 Identities=20% Similarity=0.111 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
..+++||.|+||+..
T Consensus 43 A~Lf~Gp~G~GK~~l 57 (365)
T PRK07471 43 AWLIGGPQGIGKATL 57 (365)
T ss_pred eEEEECCCCCCHHHH
Confidence 589999999999965
No 386
>PRK10689 transcription-repair coupling factor; Provisional
Probab=86.79 E-value=2.2 Score=49.85 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=60.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+++++|++|+++-+...++.++.... +.++..++|+.+..++...+ ....+|+|||. .+ ..-+++.++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----Ii-erGIDIP~v 880 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----II-ETGIDIPTA 880 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----hh-hcccccccC
Confidence 56799999999999999998887654 46788899998876554433 24789999995 22 224578889
Q ss_pred eEEEecchhhh
Q psy10680 207 TYLVLDEADRM 217 (537)
Q Consensus 207 ~liV~DE~h~~ 217 (537)
++||++.++++
T Consensus 881 ~~VIi~~ad~f 891 (1147)
T PRK10689 881 NTIIIERADHF 891 (1147)
T ss_pred CEEEEecCCCC
Confidence 99999999874
No 387
>PRK08760 replicative DNA helicase; Provisional
Probab=86.77 E-value=2.4 Score=44.71 Aligned_cols=23 Identities=22% Similarity=-0.039 Sum_probs=17.9
Q ss_pred hhccccCCcEEEEccCCCccccc
Q psy10680 54 WPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 54 i~~~~~~~~vli~apTGsGKT~~ 76 (537)
...+..|.-++|.|.||.|||..
T Consensus 223 t~G~~~G~LivIaarPg~GKTaf 245 (476)
T PRK08760 223 TAGLQPTDLIILAARPAMGKTTF 245 (476)
T ss_pred hcCCCCCceEEEEeCCCCChhHH
Confidence 34455667789999999999974
No 388
>PRK08006 replicative DNA helicase; Provisional
Probab=86.74 E-value=3.5 Score=43.37 Aligned_cols=25 Identities=20% Similarity=0.019 Sum_probs=19.1
Q ss_pred hhhhccccCCcEEEEccCCCccccc
Q psy10680 52 QSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 52 ~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
..+..+..|.-++|.|.||.|||..
T Consensus 216 ~~~~Gl~~G~LiiIaarPgmGKTaf 240 (471)
T PRK08006 216 KKTAGLQPSDLIIVAARPSMGKTTF 240 (471)
T ss_pred HhhcCCCCCcEEEEEeCCCCCHHHH
Confidence 3345566667889999999999963
No 389
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=86.58 E-value=0.49 Score=43.00 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=25.3
Q ss_pred CCChhhhhhhhccc-cCCcEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICL-SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~-~~~~vli~apTGsGKT~~ 76 (537)
..++.|.+.+.... .+..++++||||+|||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 56677777776544 567999999999999975
No 390
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.52 E-value=1.1 Score=47.38 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=12.8
Q ss_pred EEEEccCCCccccc
Q psy10680 63 LIGIAQTGSGKTLS 76 (537)
Q Consensus 63 vli~apTGsGKT~~ 76 (537)
++++||+|+|||.+
T Consensus 39 ~Lf~GppGtGKTTl 52 (504)
T PRK14963 39 YLFSGPRGVGKTTT 52 (504)
T ss_pred EEEECCCCCCHHHH
Confidence 59999999999976
No 391
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=86.43 E-value=1.8 Score=43.91 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=17.3
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+-.|+.++|.||+|+|||..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred eCCCCEEEEECCCCCChhHH
Confidence 44778999999999999965
No 392
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=86.40 E-value=0.65 Score=42.66 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-++++||||||||..
T Consensus 3 lilI~GptGSGKTTl 17 (198)
T cd01131 3 LVLVTGPTGSGKSTT 17 (198)
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999975
No 393
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=86.32 E-value=1.4 Score=44.57 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|+..+|.||.|+|||..
T Consensus 168 kGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred cCceEEEeCCCCCChhHH
Confidence 678999999999999964
No 394
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=86.28 E-value=2.3 Score=48.51 Aligned_cols=79 Identities=11% Similarity=0.178 Sum_probs=61.2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+++++|++|+++-+..+++.++.+.. ++++..++|+.+..+....+ ....+|+|||. .+ ..-+++.++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p--~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----ii-e~GIDIp~v 731 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVP--EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----II-ETGIDIPNA 731 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcccccccC
Confidence 56799999999999999988887654 57889999998876655443 34689999995 22 234577889
Q ss_pred eEEEecchhhh
Q psy10680 207 TYLVLDEADRM 217 (537)
Q Consensus 207 ~liV~DE~h~~ 217 (537)
++||++.+++.
T Consensus 732 ~~VIi~~a~~~ 742 (926)
T TIGR00580 732 NTIIIERADKF 742 (926)
T ss_pred CEEEEecCCCC
Confidence 99999999874
No 395
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=86.26 E-value=1.6 Score=43.30 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=33.9
Q ss_pred hhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeec-CchhHHHHhhhCC
Q psy10680 191 RLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVA-TPGRLIDFLESGT 260 (537)
Q Consensus 191 ~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~sa-Tp~~~~~~l~~~~ 260 (537)
.+..++..... ....+++|||++|.|... ....+++.+.... .. ..++.+ .|..+...+.+.+
T Consensus 111 ~i~~~l~~~p~-~~~~kVvII~~ae~m~~~----aaNaLLK~LEEPp-~~-~fILi~~~~~~Ll~TI~SRc 174 (314)
T PRK07399 111 EIKRFLSRPPL-EAPRKVVVIEDAETMNEA----AANALLKTLEEPG-NG-TLILIAPSPESLLPTIVSRC 174 (314)
T ss_pred HHHHHHccCcc-cCCceEEEEEchhhcCHH----HHHHHHHHHhCCC-CC-eEEEEECChHhCcHHHHhhc
Confidence 34444443322 356899999999998653 2333444443322 11 224444 3777666666544
No 396
>PRK05595 replicative DNA helicase; Provisional
Probab=86.23 E-value=2.3 Score=44.44 Aligned_cols=35 Identities=17% Similarity=0.024 Sum_probs=23.2
Q ss_pred CCCCCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
|++...+.--+.+..+..|.-++|.|.||.|||..
T Consensus 183 gi~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~ 217 (444)
T PRK05595 183 GVASGFRELDAKTSGFQKGDMILIAARPSMGKTTF 217 (444)
T ss_pred cccCChHHHHHhcCCCCCCcEEEEEecCCCChHHH
Confidence 44444333444444555667788999999999974
No 397
>PRK10436 hypothetical protein; Provisional
Probab=86.09 E-value=0.7 Score=48.25 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=22.4
Q ss_pred Chhhhhhhhcccc--CCcEEEEccCCCccccc
Q psy10680 47 TSIQAQSWPICLS--GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 47 ~~~Q~~ai~~~~~--~~~vli~apTGsGKT~~ 76 (537)
.+.|.+.+..+.. +.-++++||||||||.+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt 234 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVT 234 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHH
Confidence 4557777766543 34689999999999986
No 398
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=86.08 E-value=1.3 Score=47.99 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=24.6
Q ss_pred cccceeEEEecchhhhhhCCChHHHHHHHhhcc
Q psy10680 202 NVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 234 (537)
Q Consensus 202 ~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~ 234 (537)
.+.+-.++|+|||-.-.|..-+..+.+.+..+.
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~ 512 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLL 512 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHh
Confidence 356678999999999888776676776665433
No 399
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=85.96 E-value=3.4 Score=41.69 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=11.5
Q ss_pred cceeEEEecchhhhhh
Q psy10680 204 NRITYLVLDEADRMLD 219 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~ 219 (537)
..+++|++||+-.+.+
T Consensus 96 ~~~~~i~iDE~~~~~~ 111 (384)
T PF03237_consen 96 FEYDLIIIDEAAKVPD 111 (384)
T ss_dssp S--SEEEEESGGGSTT
T ss_pred cccceeeeeecccCch
Confidence 5678999999887654
No 400
>KOG0326|consensus
Probab=85.96 E-value=1 Score=43.47 Aligned_cols=75 Identities=27% Similarity=0.522 Sum_probs=63.4
Q ss_pred CceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHH
Q psy10680 242 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHF 316 (537)
Q Consensus 242 ~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (537)
++++.+||+++++.+......++....+++|+++.++...|.+.+..++............+.........+...
T Consensus 204 VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~ 278 (459)
T KOG0326|consen 204 VHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDR 278 (459)
T ss_pred eEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHH
Confidence 348999999999999999999999999999999999999999999999999888887777776655555544433
No 401
>KOG2004|consensus
Probab=85.95 E-value=2.6 Score=45.38 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=31.4
Q ss_pred cEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhc
Q psy10680 183 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 233 (537)
Q Consensus 183 ~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~ 233 (537)
..|=+-|+++...|+.-.... -++.+||+|.+.....++--..++..+
T Consensus 486 TYVGAMPGkiIq~LK~v~t~N---PliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 486 TYVGAMPGKIIQCLKKVKTEN---PLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred eeeccCChHHHHHHHhhCCCC---ceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 355667999999987644432 289999999988544444444444433
No 402
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=85.89 E-value=2.2 Score=42.33 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=13.8
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
++++.||+|+|||.+
T Consensus 40 ~~ll~G~~G~GKt~~ 54 (319)
T PRK00440 40 HLLFAGPPGTGKTTA 54 (319)
T ss_pred eEEEECCCCCCHHHH
Confidence 699999999999976
No 403
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.62 E-value=1.1 Score=46.09 Aligned_cols=18 Identities=39% Similarity=0.420 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+.++||||+|||.+
T Consensus 190 ~g~vi~lvGpnG~GKTTt 207 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTT 207 (420)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999976
No 404
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.49 E-value=2.1 Score=46.45 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=14.4
Q ss_pred cceeEEEecchhhhhhC
Q psy10680 204 NRITYLVLDEADRMLDM 220 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~ 220 (537)
.+++++||||+|+|...
T Consensus 123 g~~KV~IIDEvh~Ls~~ 139 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNT 139 (618)
T ss_pred CCceEEEEEChhhCCHH
Confidence 56899999999998754
No 405
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=85.44 E-value=6.2 Score=45.16 Aligned_cols=151 Identities=11% Similarity=0.053 Sum_probs=96.7
Q ss_pred hhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCC
Q psy10680 50 QAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEG 129 (537)
Q Consensus 50 Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 129 (537)
|++.+..+..+-|++-...|=-=.|+-. .+++-++.-.=.+ +|+.-+.--|-..+|--..+...... +-.
T Consensus 732 ~KEkLK~Lr~~VDvLTLSATPIPRTL~M------sm~GiRdlSvI~T-PP~~R~pV~T~V~~~d~~~ireAI~R---El~ 801 (1139)
T COG1197 732 HKEKLKELRANVDVLTLSATPIPRTLNM------SLSGIRDLSVIAT-PPEDRLPVKTFVSEYDDLLIREAILR---ELL 801 (1139)
T ss_pred HHHHHHHHhccCcEEEeeCCCCcchHHH------HHhcchhhhhccC-CCCCCcceEEEEecCChHHHHHHHHH---HHh
Confidence 8888888888888888888877777641 1122222111111 22222222221111211122211111 123
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH----hccCCcEEEeCCchhHHHHhcCcccccc
Q psy10680 130 DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD----LCRGAEIVVATPGRLIDFLESGTTNVNR 205 (537)
Q Consensus 130 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 205 (537)
+|+++.||.|..+=+.+....++.+.+ ..++.+.+|.+...+.... ...+.||+|||. +-..-++..+
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVP--EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtGIDIPn 873 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVP--EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETGIDIPN 873 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCC--ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecCcCCCC
Confidence 489999999999999999999999887 5678999998886655433 356899999995 2334567888
Q ss_pred eeEEEecchhhhh
Q psy10680 206 ITYLVLDEADRML 218 (537)
Q Consensus 206 l~liV~DE~h~~~ 218 (537)
-+.||+|-||++.
T Consensus 874 ANTiIIe~AD~fG 886 (1139)
T COG1197 874 ANTIIIERADKFG 886 (1139)
T ss_pred CceEEEecccccc
Confidence 9999999999974
No 406
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=85.34 E-value=1.8 Score=39.21 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
..++.||+|+|||..
T Consensus 16 ~~L~~G~~G~gkt~~ 30 (188)
T TIGR00678 16 AYLFAGPEGVGKELL 30 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999975
No 407
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=85.29 E-value=2.2 Score=45.53 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=25.7
Q ss_pred ccccceeEEEecchhhhhhCCChHHHHHHHhh
Q psy10680 201 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 232 (537)
Q Consensus 201 ~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~ 232 (537)
+.+.+.+++|+|||=..++++....++.+++.
T Consensus 529 ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred HHHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 35678999999999999888777777776654
No 408
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=85.20 E-value=1.3 Score=48.31 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.7
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+|++||.|+|||.+
T Consensus 40 a~Lf~GP~GvGKTTl 54 (709)
T PRK08691 40 AYLLTGTRGVGKTTI 54 (709)
T ss_pred EEEEECCCCCcHHHH
Confidence 589999999999976
No 409
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=85.17 E-value=1.7 Score=46.75 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=14.2
Q ss_pred ccceeEEEecchhhhhh
Q psy10680 203 VNRITYLVLDEADRMLD 219 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~ 219 (537)
..+.+++||||+|.+..
T Consensus 117 ~~~~kViIIDE~~~Lt~ 133 (559)
T PRK05563 117 EAKYKVYIIDEVHMLST 133 (559)
T ss_pred cCCeEEEEEECcccCCH
Confidence 45688999999999864
No 410
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=85.08 E-value=3.9 Score=39.58 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=13.6
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+-+.++||+|+|||.+
T Consensus 73 ~vi~l~G~~G~GKTTt 88 (272)
T TIGR00064 73 NVILFVGVNGVGKTTT 88 (272)
T ss_pred eEEEEECCCCCcHHHH
Confidence 4577889999999976
No 411
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=85.00 E-value=0.52 Score=45.39 Aligned_cols=13 Identities=38% Similarity=0.411 Sum_probs=11.7
Q ss_pred EEEEccCCCcccc
Q psy10680 63 LIGIAQTGSGKTL 75 (537)
Q Consensus 63 vli~apTGsGKT~ 75 (537)
.+|.||||+||+-
T Consensus 90 ~~VYGPTG~GKSq 102 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ 102 (369)
T ss_pred EEEECCCCCCHHH
Confidence 5789999999995
No 412
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=84.99 E-value=1.2 Score=48.56 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=35.0
Q ss_pred CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEccc
Q psy10680 61 RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPT 140 (537)
Q Consensus 61 ~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 140 (537)
.++++.||||||||.. +++|.+-.. ...+||+=|.
T Consensus 145 ~hvLviApTrSGKgvg-----------------------------------~VIPnLL~~----------~~S~VV~D~K 179 (663)
T PRK13876 145 EHVLCFAPTRSGKGVG-----------------------------------LVVPTLLTW----------PGSAIVHDIK 179 (663)
T ss_pred ceEEEEecCCCCccee-----------------------------------EehhhHHhC----------CCCEEEEeCc
Confidence 5899999999999999 556655443 1227788888
Q ss_pred HHHHHHHHHHHHH
Q psy10680 141 RELAQQIQAVISI 153 (537)
Q Consensus 141 ~~L~~q~~~~~~~ 153 (537)
-++........++
T Consensus 180 GEl~~~Ta~~R~~ 192 (663)
T PRK13876 180 GENWQLTAGFRAR 192 (663)
T ss_pred chHHHHHHHHHHh
Confidence 8887766665554
No 413
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.97 E-value=0.47 Score=45.95 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=16.3
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..+.+++++||||||||..
T Consensus 125 ~~~~~ili~G~tGSGKTT~ 143 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL 143 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH
T ss_pred ccceEEEEECCCccccchH
Confidence 3457999999999999975
No 414
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=84.93 E-value=1.5 Score=45.10 Aligned_cols=73 Identities=19% Similarity=0.017 Sum_probs=50.9
Q ss_pred CCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhh
Q psy10680 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHIL 121 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 121 (537)
.+-+.-..|.+|--..-.|.- .|.|-.|||||.+ .+..+..--.
T Consensus 159 kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~-----------------------------------La~Kaa~lh~ 202 (660)
T COG3972 159 KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTEL-----------------------------------LAHKAAELHS 202 (660)
T ss_pred HHhcccchhheeeeecCCchh-hhhcccCCCchhH-----------------------------------HHHHHHHHhc
Confidence 344666678887755566655 7888899999976 3333332222
Q ss_pred cCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 122 KMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 122 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
+++ .-+++|.+-|+.|..++.+.+.+++.
T Consensus 203 knP------d~~I~~Tfftk~L~s~~r~lv~~F~f 231 (660)
T COG3972 203 KNP------DSRIAFTFFTKILASTMRTLVPEFFF 231 (660)
T ss_pred CCC------CceEEEEeehHHHHHHHHHHHHHHHH
Confidence 332 55689999999999999988887663
No 415
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.86 E-value=0.81 Score=48.27 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=22.5
Q ss_pred ChhhhhhhhccccC-C-cEEEEccCCCccccc
Q psy10680 47 TSIQAQSWPICLSG-R-DLIGIAQTGSGKTLS 76 (537)
Q Consensus 47 ~~~Q~~ai~~~~~~-~-~vli~apTGsGKT~~ 76 (537)
.+.|.+.+..+... + -++++||||||||.+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt 258 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT 258 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 55677777665543 3 478999999999976
No 416
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.85 E-value=2.9 Score=43.03 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=14.6
Q ss_pred cccceeEEEecchhhhhh
Q psy10680 202 NVNRITYLVLDEADRMLD 219 (537)
Q Consensus 202 ~~~~l~liV~DE~h~~~~ 219 (537)
.+.+.+++|+||+|.+..
T Consensus 124 ~~~~~kvvIIdea~~l~~ 141 (397)
T PRK14955 124 QKGRYRVYIIDEVHMLSI 141 (397)
T ss_pred hcCCeEEEEEeChhhCCH
Confidence 346678999999999864
No 417
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=84.80 E-value=0.36 Score=46.76 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=17.3
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+.+++.++++||+|+|||..
T Consensus 30 ~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHH
T ss_pred HHcCCcEEEECCCCCchhHH
Confidence 34677999999999999976
No 418
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.78 E-value=0.37 Score=34.82 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=19.2
Q ss_pred hhhhhhccccCCcEEEEccCCCccccc
Q psy10680 50 QAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 50 Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
..+.++.-..|...++.+|+|+|||.+
T Consensus 13 ~~~~~~~~~~g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 13 DGETIDFDPRGDVTLITGPNGSGKSTL 39 (62)
T ss_pred CCeEEeecCCCcEEEEECCCCCCHHHH
Confidence 344444433455799999999999965
No 419
>PF12846 AAA_10: AAA-like domain
Probab=84.71 E-value=0.92 Score=44.41 Aligned_cols=17 Identities=35% Similarity=0.431 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+.++++.|+||+|||..
T Consensus 1 n~h~~i~G~tGsGKT~~ 17 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTL 17 (304)
T ss_pred CCeEEEECCCCCcHHHH
Confidence 36899999999999976
No 420
>KOG0733|consensus
Probab=84.69 E-value=0.43 Score=50.12 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=39.5
Q ss_pred cceecCCcceeeehhhhhhccccc--CCCCCCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 17 PYFRSGYINVLIASDVASRGLGKN--SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~--~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
...+...|+..+.-..+...|.-. ..+++|-.++.--+. .-..++++||+|+|||+.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLL 561 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHH
Confidence 345678999999999998888532 234444444433332 235799999999999986
No 421
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=84.67 E-value=1 Score=46.17 Aligned_cols=51 Identities=29% Similarity=0.359 Sum_probs=32.9
Q ss_pred ccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEE
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIAL 135 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l 135 (537)
.-...+++++.|.||+|||.+ +..++..+... +.++|
T Consensus 11 ~~~e~~~~li~G~~GsGKT~~------------------------------------i~~ll~~~~~~-------g~~~i 47 (386)
T PF10412_consen 11 KDSENRHILIIGATGSGKTQA------------------------------------IRHLLDQIRAR-------GDRAI 47 (386)
T ss_dssp GGGGGG-EEEEE-TTSSHHHH------------------------------------HHHHHHHHHHT-------T-EEE
T ss_pred cchhhCcEEEECCCCCCHHHH------------------------------------HHHHHHHHHHc-------CCEEE
Confidence 334557999999999999975 45566666554 55688
Q ss_pred EEcccHHHHHHHHH
Q psy10680 136 VLAPTRELAQQIQA 149 (537)
Q Consensus 136 il~Pt~~L~~q~~~ 149 (537)
|.=|.-+.....++
T Consensus 48 I~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 48 IYDPKGEFTERFYR 61 (386)
T ss_dssp EEEETTHHHHHH--
T ss_pred EEECCchHHHHhcC
Confidence 88888777554443
No 422
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=84.67 E-value=1 Score=48.35 Aligned_cols=16 Identities=31% Similarity=0.223 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+..|++||.|+|||..
T Consensus 39 hA~Lf~GP~GvGKTTl 54 (605)
T PRK05896 39 HAYIFSGPRGIGKTSI 54 (605)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3588999999999976
No 423
>KOG0651|consensus
Probab=84.66 E-value=2.2 Score=41.36 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=27.7
Q ss_pred eEEEecchhhhhhCC----------ChHHHHHHHhhccccccccCCceeecC
Q psy10680 207 TYLVLDEADRMLDMG----------FEPQIRKIIQMTRTRDLCRGAEIVVAT 248 (537)
Q Consensus 207 ~liV~DE~h~~~~~~----------~~~~l~~il~~~~~~~~~~~~~~~saT 248 (537)
++|.+||+|.+...- .-.-++++++.........++.++.||
T Consensus 227 ciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Imat 278 (388)
T KOG0651|consen 227 CIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMAT 278 (388)
T ss_pred eEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEec
Confidence 788899999865432 123566666666556666667677777
No 424
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=84.65 E-value=5.5 Score=42.42 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=74.1
Q ss_pred cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEc
Q psy10680 59 SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLA 138 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 138 (537)
+.+-.+..-|=-.|||+ ++.|++..++..- .|-++.|++
T Consensus 201 KQkaTVFLVPRRHGKTW------------------------------------f~VpiIsllL~s~-----~gI~IGYvA 239 (668)
T PHA03372 201 KQKATVFLVPRRHGKTW------------------------------------FIIPIISFLLKNI-----IGISIGYVA 239 (668)
T ss_pred hccceEEEecccCCcee------------------------------------hHHHHHHHHHHhh-----cCceEEEEe
Confidence 34677888999999999 4777777666532 266799999
Q ss_pred ccHHHHHHHHHHHH----HhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchh-----HHHHhcCcccccceeEE
Q psy10680 139 PTRELAQQIQAVIS----IFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRL-----IDFLESGTTNVNRITYL 209 (537)
Q Consensus 139 Pt~~L~~q~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-----~~~l~~~~~~~~~l~li 209 (537)
.-+..++-+..++. .+++.-. +... ++..|.+.-|..- ....+.....-+.++++
T Consensus 240 HqKhvs~~Vf~EI~~~lrrwF~~~~--vi~~--------------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll 303 (668)
T PHA03372 240 HQKHVSQFVLKEVEFRCRRMFPRKH--TIEN--------------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLL 303 (668)
T ss_pred eHHHHHHHHHHHHHHHHhhhcCccc--eeee--------------cCcEEEEecCCCcceeeehhhccCccccCCCCCEE
Confidence 99988877666654 3333211 1111 1223333333221 11123334455789999
Q ss_pred EecchhhhhhCCChHHHHHHHhhccc--cccccCCceeecC
Q psy10680 210 VLDEADRMLDMGFEPQIRKIIQMTRT--RDLCRGAEIVVAT 248 (537)
Q Consensus 210 V~DE~h~~~~~~~~~~l~~il~~~~~--~~~~~~~~~~saT 248 (537)
++||||.+.. +.+..++..+.. .+.+ ++|++
T Consensus 304 ~VDEA~FI~~----~a~~tilgfm~q~~~KiI----fISS~ 336 (668)
T PHA03372 304 LVDEAHFIKK----DAFNTILGFLAQNTTKII----FISST 336 (668)
T ss_pred EEehhhccCH----HHHHHhhhhhcccCceEE----EEeCC
Confidence 9999998754 345555555443 3333 66655
No 425
>PRK09165 replicative DNA helicase; Provisional
Probab=84.54 E-value=4.2 Score=43.17 Aligned_cols=22 Identities=18% Similarity=-0.017 Sum_probs=17.2
Q ss_pred hccccCCcEEEEccCCCccccc
Q psy10680 55 PICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 55 ~~~~~~~~vli~apTGsGKT~~ 76 (537)
-.+..|.-++|.|+||+|||..
T Consensus 212 gG~~~g~livIaarpg~GKT~~ 233 (497)
T PRK09165 212 GGLHPSDLIILAGRPSMGKTAL 233 (497)
T ss_pred CCCCCCceEEEEeCCCCChHHH
Confidence 3445556789999999999974
No 426
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=84.53 E-value=2.6 Score=46.36 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=14.1
Q ss_pred ccceeEEEecchhhhhh
Q psy10680 203 VNRITYLVLDEADRMLD 219 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~ 219 (537)
..+.+++|+||+|.+..
T Consensus 116 ~g~~KV~IIDEa~~LT~ 132 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSK 132 (725)
T ss_pred cCCCEEEEEEChhhCCH
Confidence 35778999999999864
No 427
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.46 E-value=1 Score=45.25 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+..++++||||||||..
T Consensus 121 ~~g~ili~G~tGSGKTT~ 138 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT 138 (343)
T ss_pred cCcEEEEECCCCCCHHHH
Confidence 346899999999999975
No 428
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=84.04 E-value=0.52 Score=45.49 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=20.4
Q ss_pred hhhhccccCCcEEEEccCCCccccc
Q psy10680 52 QSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 52 ~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
.+...+..|+++++.||+|+|||.+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~l 37 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTL 37 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHH
Confidence 3445566788999999999999976
No 429
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=83.93 E-value=1.1 Score=45.49 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+..++++||||||||..
T Consensus 148 ~~GlilI~G~TGSGKTT~ 165 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL 165 (372)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 345789999999999975
No 430
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=83.88 E-value=6.7 Score=40.45 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=13.1
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-+.++|++|+|||.+
T Consensus 102 vi~lvG~~GvGKTTt 116 (429)
T TIGR01425 102 VIMFVGLQGSGKTTT 116 (429)
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999976
No 431
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=83.80 E-value=4.3 Score=42.45 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+++.|++|+|||..
T Consensus 93 ~GsvilI~G~pGsGKTTL 110 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTL 110 (454)
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 345789999999999975
No 432
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=83.61 E-value=4.2 Score=45.85 Aligned_cols=17 Identities=35% Similarity=0.347 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+..++++||+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45799999999999965
No 433
>KOG0333|consensus
Probab=83.58 E-value=1.1 Score=46.22 Aligned_cols=61 Identities=56% Similarity=0.890 Sum_probs=54.0
Q ss_pred cccCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCC
Q psy10680 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHP 298 (537)
Q Consensus 238 ~~~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (537)
...++.++.|||+++.+.+.+..+-.+++.++++++++++.+.+|++++..++......+.
T Consensus 369 ls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~ 429 (673)
T KOG0333|consen 369 LSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNA 429 (673)
T ss_pred hhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCcccc
Confidence 3355668999999999999999999999999999999999999999999999988765554
No 434
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.37 E-value=3 Score=44.51 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=14.0
Q ss_pred ccceeEEEecchhhhhh
Q psy10680 203 VNRITYLVLDEADRMLD 219 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~ 219 (537)
..+.+++||||+|.+..
T Consensus 117 ~g~~kViIIDEa~~ls~ 133 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSK 133 (546)
T ss_pred cCCcEEEEEechhhccH
Confidence 35678999999999865
No 435
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.19 E-value=2 Score=43.37 Aligned_cols=18 Identities=44% Similarity=0.460 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.++.++++||+|+|||.+
T Consensus 205 ~~~ii~lvGptGvGKTTt 222 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTT 222 (407)
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456789999999999976
No 436
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=82.85 E-value=1.3 Score=47.51 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=22.1
Q ss_pred cccceeEEEecchhhhhhCCChHHHHHHHhhc
Q psy10680 202 NVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 233 (537)
Q Consensus 202 ~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~ 233 (537)
.+++.+++|+||+=--+|......+.+.+...
T Consensus 485 ll~~~~iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 485 LLADAPILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 35778899999988877765555555555443
No 437
>PRK14873 primosome assembly protein PriA; Provisional
Probab=82.74 E-value=2.9 Score=45.91 Aligned_cols=80 Identities=16% Similarity=0.056 Sum_probs=62.8
Q ss_pred hHhCceeEEEEeeccCccccccccccccc-cccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE
Q psy10680 372 LVAGIERWVFMEINHNGTETKHYGVSSSL-YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN 450 (537)
Q Consensus 372 ~~~~~~~~if~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~ 450 (537)
...|...++.+-......++....-...+ ..+..+|++++..+|.+......+|+.+|+|+|..+.- .-+++..+||.
T Consensus 185 l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLIIv 263 (665)
T PRK14873 185 LRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGLVAI 263 (665)
T ss_pred HHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCEEEE
Confidence 34567777888888888777444444455 66888999999999999999999999999999976433 56778888886
Q ss_pred ec
Q psy10680 451 YD 452 (537)
Q Consensus 451 ~d 452 (537)
.+
T Consensus 264 dE 265 (665)
T PRK14873 264 WD 265 (665)
T ss_pred Ec
Confidence 65
No 438
>KOG0745|consensus
Probab=82.70 E-value=0.61 Score=47.01 Aligned_cols=16 Identities=44% Similarity=0.642 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.|+|+.+|||||||+.
T Consensus 227 SNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLL 242 (564)
T ss_pred ccEEEECCCCCchhHH
Confidence 5899999999999975
No 439
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.65 E-value=0.89 Score=45.00 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=24.7
Q ss_pred CCCChhhhhh-hhccccCCcEEEEccCCCccccc
Q psy10680 44 GKPTSIQAQS-WPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 44 ~~~~~~Q~~a-i~~~~~~~~vli~apTGsGKT~~ 76 (537)
..+++.|..- |.++..+++++++|+||||||..
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~ 159 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTL 159 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH
Confidence 3555565544 45566778999999999999975
No 440
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=82.64 E-value=15 Score=35.40 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+..+.+++|+|+|||..
T Consensus 74 ~~~~i~~~G~~g~GKTtl 91 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTT 91 (270)
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 346889999999999975
No 441
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=82.50 E-value=2.4 Score=40.76 Aligned_cols=20 Identities=15% Similarity=0.028 Sum_probs=16.7
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-++|.||+|+|||..
T Consensus 33 ip~gs~~lI~G~pGtGKT~l 52 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLM 52 (259)
T ss_pred eECCcEEEEEcCCCCCHHHH
Confidence 44567899999999999975
No 442
>KOG2028|consensus
Probab=82.49 E-value=2.2 Score=42.20 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++|+.||+|+|||..
T Consensus 163 pSmIlWGppG~GKTtl 178 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTL 178 (554)
T ss_pred CceEEecCCCCchHHH
Confidence 3899999999999965
No 443
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=82.45 E-value=4.5 Score=42.50 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=50.8
Q ss_pred CCChhhhhhhhcccc------C----CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchh
Q psy10680 45 KPTSIQAQSWPICLS------G----RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYIL 114 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~------~----~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (537)
.+-|+|..++-.+.. | +.++|..|=+-|||... ..+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~----------------------------------A~i 106 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLA----------------------------------AGI 106 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHH----------------------------------HHH
Confidence 678899999988771 1 36799999999999651 223
Q ss_pred hHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 115 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
.....+... ..+..+.|++|+.+-+.+....++....
T Consensus 107 ~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~F~~ar~mv~ 143 (546)
T COG4626 107 MMTALLLNW-----RSGAGIYILAPSVEQAANSFNPARDMVK 143 (546)
T ss_pred HHHHHHhhh-----hcCCcEEEEeccHHHHHHhhHHHHHHHH
Confidence 333333332 1256689999999999888887775544
No 444
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.20 E-value=3.8 Score=43.81 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.2
Q ss_pred ccceeEEEecchhhhhh
Q psy10680 203 VNRITYLVLDEADRMLD 219 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~ 219 (537)
..+.+++||||+|.+..
T Consensus 117 ~~~~kVvIIDEad~ls~ 133 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSK 133 (527)
T ss_pred cCCceEEEEcCcccCCH
Confidence 35678999999999865
No 445
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=82.18 E-value=5.4 Score=40.32 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+++-+.||.|.|||+.
T Consensus 62 ~~GlYl~G~vG~GKT~L 78 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML 78 (362)
T ss_pred CceEEEECCCCCchhHH
Confidence 46899999999999965
No 446
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.12 E-value=5.9 Score=40.64 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=13.7
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.-++++||||+|||.+
T Consensus 224 ~vi~lvGptGvGKTTt 239 (432)
T PRK12724 224 KVVFFVGPTGSGKTTS 239 (432)
T ss_pred eEEEEECCCCCCHHHH
Confidence 3478999999999976
No 447
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=82.08 E-value=0.98 Score=46.69 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=18.3
Q ss_pred hhccccCCcEEEEccCCCccccc
Q psy10680 54 WPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 54 i~~~~~~~~vli~apTGsGKT~~ 76 (537)
++.-...+++++.|+||+|||..
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~ 58 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ 58 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH
Confidence 44444557999999999999975
No 448
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=82.07 E-value=2.2 Score=38.77 Aligned_cols=67 Identities=16% Similarity=0.041 Sum_probs=37.8
Q ss_pred hhhccc-cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCC---C
Q psy10680 53 SWPICL-SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLE---E 128 (537)
Q Consensus 53 ai~~~~-~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~ 128 (537)
.++.+. .|.-+++.||+|+|||.. ++.+..++......- .
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT~~------------------------------------~~~l~~~~~~g~~~~g~~~ 67 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKTTL------------------------------------ALQLAAALATGRPFLGELP 67 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHHHH------------------------------------HHHHHHHHHT---TT----
T ss_pred eECCcccCCeEEEEEeCCCCCHHHH------------------------------------HHHHHHHHHhCCccCCccc
Confidence 333444 567799999999999975 444544444321110 0
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 129 GDGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 129 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
..+.+++|+..-.. ..++.+++..+..
T Consensus 68 ~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 68 PRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp -----EEEEESSS--HHHHHHHHHHHHT
T ss_pred ccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 13566888776655 6677777775543
No 449
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=82.04 E-value=1 Score=47.75 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=14.3
Q ss_pred ccceeEEEecchhhhhh
Q psy10680 203 VNRITYLVLDEADRMLD 219 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~ 219 (537)
..+.+++|+||+|.+..
T Consensus 115 ~~~~KVvIIDEad~Lt~ 131 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK 131 (535)
T ss_pred cCCeEEEEEECcccCCH
Confidence 35789999999999865
No 450
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.98 E-value=4.4 Score=42.80 Aligned_cols=32 Identities=6% Similarity=-0.020 Sum_probs=19.8
Q ss_pred cccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 466 RTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 466 RagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
++-|....|..++.+..+..+....-.+.+.+
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (486)
T PRK14953 409 NAEIKEEEGKITIKVEKSEEDTLDLEIKSIKK 440 (486)
T ss_pred hhhhhhhcCceEEEecccHHHHHHHHHHHHHH
Confidence 55566667787777776655555555555554
No 451
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=81.95 E-value=1.8 Score=47.90 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=59.3
Q ss_pred HhCceeEEEEeeccCccccc---cccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccCCCcCCccEE
Q psy10680 373 VAGIERWVFMEINHNGTETK---HYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASD-VASRGLDVEDIKYV 448 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~---~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~-~l~~Gidi~~~~~V 448 (537)
..+....+.+.+..-+.+.. ...+...++++..+||+++..+|...++.+.+|+.+|+|+|. .+...+.+.++.+|
T Consensus 308 ~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lv 387 (681)
T PRK10917 308 EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLV 387 (681)
T ss_pred HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceE
Confidence 44555666666666555542 233444578899999999999999999999999999999996 45566788899988
Q ss_pred EE
Q psy10680 449 VN 450 (537)
Q Consensus 449 i~ 450 (537)
|.
T Consensus 388 VI 389 (681)
T PRK10917 388 II 389 (681)
T ss_pred EE
Confidence 74
No 452
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=81.91 E-value=2.1 Score=46.74 Aligned_cols=58 Identities=22% Similarity=0.170 Sum_probs=39.6
Q ss_pred CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEccc
Q psy10680 61 RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPT 140 (537)
Q Consensus 61 ~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 140 (537)
.++++.||||+|||.. +++|.+-.. ++-++++=|.
T Consensus 225 ~H~Lv~ApTgsGKt~g-----------------------------------~VIPnLL~~----------~gS~VV~DpK 259 (641)
T PRK13822 225 THGLVFAGSGGFKTTS-----------------------------------VVVPTALKW----------GGPLVVLDPS 259 (641)
T ss_pred ceEEEEeCCCCCccce-----------------------------------EehhhhhcC----------CCCEEEEeCc
Confidence 5899999999999999 666654322 2337888899
Q ss_pred HHHHHHHHHHHHHhcccceeeEEEEEc
Q psy10680 141 RELAQQIQAVISIFSRTMRIRHACLYG 167 (537)
Q Consensus 141 ~~L~~q~~~~~~~~~~~~~~~~~~~~~ 167 (537)
.|+........++. |.++.++..
T Consensus 260 gEl~~~Ta~~R~~~----G~~V~vfdP 282 (641)
T PRK13822 260 TEVAPMVSEHRRDA----GREVIVLDP 282 (641)
T ss_pred HHHHHHHHHHHHHC----CCeEEEEeC
Confidence 99877766655433 344444443
No 453
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=81.90 E-value=3.2 Score=43.09 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..++++|++|+|||.+
T Consensus 96 ~vI~lvG~~GsGKTTt 111 (437)
T PRK00771 96 QTIMLVGLQGSGKTTT 111 (437)
T ss_pred eEEEEECCCCCcHHHH
Confidence 3688999999999976
No 454
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=81.84 E-value=0.83 Score=49.25 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=22.1
Q ss_pred ChhhhhhhhccccC--CcEEEEccCCCccccc
Q psy10680 47 TSIQAQSWPICLSG--RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 47 ~~~Q~~ai~~~~~~--~~vli~apTGsGKT~~ 76 (537)
.+.|.+.+..+... ..++++||||||||.+
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt 332 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS 332 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 45666677655443 4678999999999976
No 455
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=81.72 E-value=2 Score=46.62 Aligned_cols=49 Identities=24% Similarity=0.266 Sum_probs=36.1
Q ss_pred CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEccc
Q psy10680 61 RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPT 140 (537)
Q Consensus 61 ~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt 140 (537)
.++++.||||+|||.. +++|.+-.. +.-++++=|.
T Consensus 212 ~H~lv~ApTgsGKgvg-----------------------------------~VIPnLL~~----------~gS~VV~DpK 246 (623)
T TIGR02767 212 THMIFFAGSGGFKTTS-----------------------------------VVVPTALKY----------GGPLVCLDPS 246 (623)
T ss_pred ceEEEEeCCCCCccce-----------------------------------eehhhhhcC----------CCCEEEEECh
Confidence 5899999999999999 666653322 2338889999
Q ss_pred HHHHHHHHHHHHHh
Q psy10680 141 RELAQQIQAVISIF 154 (537)
Q Consensus 141 ~~L~~q~~~~~~~~ 154 (537)
-|+.......-++.
T Consensus 247 gE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 247 TEVAPMVCEHRRQA 260 (623)
T ss_pred HHHHHHHHHHHHHc
Confidence 99977776655543
No 456
>PRK05636 replicative DNA helicase; Provisional
Probab=81.64 E-value=4.5 Score=42.92 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=17.8
Q ss_pred hhhccccCCcEEEEccCCCccccc
Q psy10680 53 SWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 53 ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
..-.+..|.-+++.|.||+|||..
T Consensus 258 ~t~Gl~~G~Liiiaarpg~GKT~~ 281 (505)
T PRK05636 258 LTNGLRGGQMIIVAARPGVGKSTL 281 (505)
T ss_pred hcCCCCCCceEEEEeCCCCCHHHH
Confidence 334445556789999999999964
No 457
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=81.61 E-value=1.4 Score=47.31 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=14.3
Q ss_pred ccceeEEEecchhhhhh
Q psy10680 203 VNRITYLVLDEADRMLD 219 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~ 219 (537)
..+.+++|+||+|.+..
T Consensus 117 ~~~~KVvIIDEa~~Ls~ 133 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSN 133 (563)
T ss_pred cCCCEEEEEEChhhcCH
Confidence 46788999999999865
No 458
>KOG0732|consensus
Probab=81.38 E-value=0.79 Score=51.67 Aligned_cols=55 Identities=15% Similarity=-0.017 Sum_probs=32.2
Q ss_pred ecCCcceeeehhhhhhcccccCCC-CCCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGY-GKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
+...|+..+-...+...|. .+-+ .-++|-+-.-+ .+..-+.+++++|+|+|||++
T Consensus 260 ~~v~fd~vggl~~~i~~LK-EmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~ 315 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLK-EMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLM 315 (1080)
T ss_pred cccCccccccHHHHHHHHH-HHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHH
Confidence 4455666666666666663 2222 12222222222 334557899999999999987
No 459
>PHA00350 putative assembly protein
Probab=81.36 E-value=3.6 Score=41.91 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=12.6
Q ss_pred EEEEccCCCccccc
Q psy10680 63 LIGIAQTGSGKTLS 76 (537)
Q Consensus 63 vli~apTGsGKT~~ 76 (537)
.++.|.+|||||+.
T Consensus 4 ~l~tG~pGSGKT~~ 17 (399)
T PHA00350 4 YAIVGRPGSYKSYE 17 (399)
T ss_pred EEEecCCCCchhHH
Confidence 57899999999986
No 460
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.32 E-value=0.66 Score=39.69 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
++++.||+|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 589999999999965
No 461
>PRK05580 primosome assembly protein PriA; Validated
Probab=81.23 E-value=2.7 Score=46.46 Aligned_cols=79 Identities=14% Similarity=0.058 Sum_probs=59.8
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEec
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYD 452 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d 452 (537)
..+...++.+.+...+.++........+..+..+||+++..+|.+....+.+|+.+|+|+|..... +.+.++.+||.-+
T Consensus 188 ~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 188 AQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 345667788888777777733333345678888999999999999999999999999999974332 5677888887654
No 462
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=80.95 E-value=0.77 Score=42.08 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=13.3
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+.++++.||+|+|||+.
T Consensus 21 G~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp CC--EEEES-CCCTHHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 457999999999999976
No 463
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=80.87 E-value=2.2 Score=40.25 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=16.9
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+++.||+|+|||..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl 40 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSIL 40 (230)
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 45577899999999999975
No 464
>KOG0348|consensus
Probab=80.80 E-value=2.7 Score=43.64 Aligned_cols=56 Identities=43% Similarity=0.858 Sum_probs=47.8
Q ss_pred cCCceeecCchhHHHHhhhCC-cccccceeeeccchhhhhcCCChHHHHHHHHhhhc
Q psy10680 240 RGAEIVVATPGRLIDFLESGT-TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295 (537)
Q Consensus 240 ~~~~~~saTp~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (537)
.++.++.+||+++.+++.+.. +...++.++++|+++++++.||..++.+++.....
T Consensus 261 KGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 261 KGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHS 317 (708)
T ss_pred cCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhh
Confidence 455699999999999998843 55678999999999999999999999998887633
No 465
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=80.72 E-value=0.74 Score=38.22 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=12.6
Q ss_pred EEEEccCCCccccc
Q psy10680 63 LIGIAQTGSGKTLS 76 (537)
Q Consensus 63 vli~apTGsGKT~~ 76 (537)
++|.||+|||||..
T Consensus 2 I~I~G~~gsGKST~ 15 (121)
T PF13207_consen 2 IIISGPPGSGKSTL 15 (121)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999975
No 466
>KOG0343|consensus
Probab=80.64 E-value=2.6 Score=43.94 Aligned_cols=77 Identities=31% Similarity=0.519 Sum_probs=61.2
Q ss_pred cCCceeecCchhHHHHhhhCC-cccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHH
Q psy10680 240 RGAEIVVATPGRLIDFLESGT-TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHF 316 (537)
Q Consensus 240 ~~~~~~saTp~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (537)
.+..++.+||++++.++...+ +....+-.+++|++++++++||...+..++......-+...++.........+...
T Consensus 189 ~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRL 266 (758)
T KOG0343|consen 189 SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARL 266 (758)
T ss_pred hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHh
Confidence 344499999999999998854 45567888999999999999999999999998877777777776666555554433
No 467
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=80.60 E-value=6.5 Score=39.03 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.3
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+.-+.++||+|+|||.+
T Consensus 114 ~~vi~lvGpnGsGKTTt 130 (318)
T PRK10416 114 PFVILVVGVNGVGKTTT 130 (318)
T ss_pred CeEEEEECCCCCcHHHH
Confidence 44678899999999976
No 468
>PRK06321 replicative DNA helicase; Provisional
Probab=80.51 E-value=7.6 Score=40.84 Aligned_cols=25 Identities=20% Similarity=0.013 Sum_probs=18.5
Q ss_pred hhhhccccCCcEEEEccCCCccccc
Q psy10680 52 QSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 52 ~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
+.+..+..|.=++|.|.||.|||..
T Consensus 218 ~~t~Gl~~G~LiiiaarPgmGKTaf 242 (472)
T PRK06321 218 KMINGFSPSNLMILAARPAMGKTAL 242 (472)
T ss_pred HHhcCCCCCcEEEEEeCCCCChHHH
Confidence 3344455666789999999999974
No 469
>PRK04328 hypothetical protein; Provisional
Probab=80.47 E-value=2.1 Score=40.95 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=15.9
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
-.|..++|.||+|+|||..
T Consensus 21 p~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred cCCcEEEEEcCCCCCHHHH
Confidence 3567899999999999974
No 470
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=80.44 E-value=0.76 Score=38.58 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=13.7
Q ss_pred ceeEEEecchhhhhhCC
Q psy10680 205 RITYLVLDEADRMLDMG 221 (537)
Q Consensus 205 ~l~liV~DE~h~~~~~~ 221 (537)
...+|++||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 35899999999987653
No 471
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=80.44 E-value=5 Score=43.40 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=39.2
Q ss_pred EEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc
Q psy10680 165 LYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT 235 (537)
Q Consensus 165 ~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~ 235 (537)
..||..+....+..+ -.-|=+-|+++..-+....... -++.+||+|.|.....+.--..++..+-+
T Consensus 382 sLGGvrDEAEIRGHR--RTYIGamPGrIiQ~mkka~~~N---Pv~LLDEIDKm~ss~rGDPaSALLEVLDP 447 (782)
T COG0466 382 SLGGVRDEAEIRGHR--RTYIGAMPGKIIQGMKKAGVKN---PVFLLDEIDKMGSSFRGDPASALLEVLDP 447 (782)
T ss_pred ecCccccHHHhcccc--ccccccCChHHHHHHHHhCCcC---CeEEeechhhccCCCCCChHHHHHhhcCH
Confidence 345666554443322 2344556899888776533322 28999999999877555545555544443
No 472
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=80.35 E-value=1.8 Score=41.68 Aligned_cols=57 Identities=23% Similarity=0.264 Sum_probs=38.1
Q ss_pred cccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEE
Q psy10680 57 CLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALV 136 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~li 136 (537)
+-.|+.++|.|++|+|||.. .+..+...... |-.+++
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f------------------------------------~~qfl~~~~~~-------ge~vly 56 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIF------------------------------------ALQFLYEGARE-------GEPVLY 56 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHH------------------------------------HHHHHHHHHhc-------CCcEEE
Confidence 34567999999999999973 44444444432 344665
Q ss_pred EcccHHHHHHHHHHHHHhccc
Q psy10680 137 LAPTRELAQQIQAVISIFSRT 157 (537)
Q Consensus 137 l~Pt~~L~~q~~~~~~~~~~~ 157 (537)
+-+.+...++.+.+..+...
T Consensus 57 -vs~~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 57 -VSTEESPEELLENARSFGWD 76 (260)
T ss_pred -EEecCCHHHHHHHHHHcCCC
Confidence 45557777777777765554
No 473
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=80.15 E-value=1.3 Score=43.82 Aligned_cols=20 Identities=40% Similarity=0.390 Sum_probs=17.0
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..+.+++++||||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 34678999999999999974
No 474
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.03 E-value=1.6 Score=43.04 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=26.9
Q ss_pred ceeEEEecchhhhhhCCC-------hH---HHHHHHhhccccccccCCceeecC
Q psy10680 205 RITYLVLDEADRMLDMGF-------EP---QIRKIIQMTRTRDLCRGAEIVVAT 248 (537)
Q Consensus 205 ~l~liV~DE~h~~~~~~~-------~~---~l~~il~~~~~~~~~~~~~~~saT 248 (537)
..+.|++||+|.+...-+ .. -+++++..+--.....++.++.||
T Consensus 244 aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~AT 297 (406)
T COG1222 244 APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMAT 297 (406)
T ss_pred CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEec
Confidence 467899999999865422 22 333444444334445566688888
No 475
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=79.77 E-value=41 Score=36.22 Aligned_cols=44 Identities=27% Similarity=0.589 Sum_probs=31.3
Q ss_pred eeecCchhH-----HHHhhhCCcccccceeeeccchhhhhcCC--ChHHHHHHHHh
Q psy10680 244 IVVATPGRL-----IDFLESGTTNVNRITYLVLDEADRMLDMG--FEPQIRKIIQM 292 (537)
Q Consensus 244 ~~saTp~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 292 (537)
++.-+|+++ .+.+. -.++..+.+|++|++..|| |+|....+...
T Consensus 110 lLyisPErl~~~~f~~~L~-----~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l 160 (590)
T COG0514 110 LLYISPERLMSPRFLELLK-----RLPISLVAIDEAHCISQWGHDFRPDYRRLGRL 160 (590)
T ss_pred EEEECchhhcChHHHHHHH-----hCCCceEEechHHHHhhcCCccCHhHHHHHHH
Confidence 566666655 33333 3457888999999999997 88888876554
No 476
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=79.72 E-value=3.7 Score=45.44 Aligned_cols=71 Identities=18% Similarity=0.146 Sum_probs=50.8
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.+++-|++|.... ...++|.|..|||||.+ +..-+.++....
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~v------------------------------------lt~Ria~li~~~ 43 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRV------------------------------------LTERIAYLIAAG 43 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhh------------------------------------HHHHHHHHHHcC
Confidence 5788999999776 45788888889999988 222333333332
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
.. ....++.+.=|+.-+.++.+++..+..
T Consensus 44 ~v---~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 44 GV---DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred Cc---ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 11 123488999999999999999987765
No 477
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.70 E-value=2.3 Score=46.16 Aligned_cols=15 Identities=33% Similarity=0.302 Sum_probs=13.6
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
..|++||.|+|||.+
T Consensus 40 a~Lf~Gp~GvGKttl 54 (620)
T PRK14954 40 GYIFSGLRGVGKTTA 54 (620)
T ss_pred eEEEECCCCCCHHHH
Confidence 588999999999976
No 478
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.69 E-value=1.8 Score=47.48 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=27.2
Q ss_pred cceeEEEecchhhhhhCCChHHHHHHHhhccc
Q psy10680 204 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRT 235 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~ 235 (537)
.+.-++|+|+.|.+.+......+..+++..|+
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~ 159 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPE 159 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCC
Confidence 34569999999999998888888888888887
No 479
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=79.68 E-value=3.8 Score=36.56 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=13.7
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+.++|.|++|||||..
T Consensus 2 ~~ili~G~~~sGKS~~ 17 (170)
T PRK05800 2 MLILVTGGARSGKSRF 17 (170)
T ss_pred CEEEEECCCCccHHHH
Confidence 3589999999999974
No 480
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=79.65 E-value=3.5 Score=45.36 Aligned_cols=79 Identities=16% Similarity=0.095 Sum_probs=66.0
Q ss_pred HhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE
Q psy10680 371 ILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN 450 (537)
Q Consensus 371 ~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~ 450 (537)
.+..|...++.+-.......+....-...|.++..+|+++++.+|.....+.++|+.+|+|+|..+. =.-++++.+||.
T Consensus 241 ~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 241 VLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred HHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-cCchhhccEEEE
Confidence 3456677788888888888887777778889999999999999999999999999999999997543 356777888874
No 481
>PTZ00110 helicase; Provisional
Probab=79.47 E-value=3.4 Score=44.44 Aligned_cols=67 Identities=63% Similarity=0.936 Sum_probs=53.5
Q ss_pred CCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehh
Q psy10680 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFIS 307 (537)
Q Consensus 241 ~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (537)
++.++.+||.++.+++......+.++..+++||++.+++.+|.+.+..+............++....
T Consensus 253 ~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p 319 (545)
T PTZ00110 253 GVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP 319 (545)
T ss_pred CCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC
Confidence 3458999999999999988888889999999999999999999999888876654444444444443
No 482
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.30 E-value=2.8 Score=44.51 Aligned_cols=79 Identities=15% Similarity=0.076 Sum_probs=57.6
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEec
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYD 452 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d 452 (537)
..+...++.+....-+.++........+..+..+||+++..+|.+......+|+.+|+|+|..... ..+.++.+||.-+
T Consensus 23 ~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 23 ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 345566677777666666633333345667888999999999999999999999999999965432 4577888887544
No 483
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=79.29 E-value=2.7 Score=39.51 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.8
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|..+++.||+|+|||..
T Consensus 17 i~~G~~~~i~G~~G~GKT~l 36 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIF 36 (229)
T ss_pred CcCCeEEEEECCCCCChHHH
Confidence 44567899999999999974
No 484
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=78.84 E-value=1.8 Score=43.37 Aligned_cols=31 Identities=23% Similarity=0.073 Sum_probs=22.9
Q ss_pred CChhhhhhhhccc-cCCcEEEEccCCCccccc
Q psy10680 46 PTSIQAQSWPICL-SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 46 ~~~~Q~~ai~~~~-~~~~vli~apTGsGKT~~ 76 (537)
.++.+.+.+..+. .+.+++++|+||+|||..
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl 194 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTL 194 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 4456666665544 456999999999999964
No 485
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=78.82 E-value=7.2 Score=39.31 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.||+|+|||.+
T Consensus 38 ~~Ll~G~~G~GKt~~ 52 (355)
T TIGR02397 38 AYLFSGPRGTGKTSI 52 (355)
T ss_pred EEEEECCCCCCHHHH
Confidence 579999999999965
No 486
>KOG0335|consensus
Probab=78.73 E-value=2.1 Score=44.15 Aligned_cols=59 Identities=58% Similarity=0.935 Sum_probs=52.5
Q ss_pred ccccCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhc-CCChHHHHHHHHhhhc
Q psy10680 237 DLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKIIQMTRH 295 (537)
Q Consensus 237 ~~~~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 295 (537)
....++.++.|||+++.+++......+..+.++++||++++++ .+|.+++..++.....
T Consensus 198 ~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~ 257 (482)
T KOG0335|consen 198 FIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGM 257 (482)
T ss_pred hhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCC
Confidence 3445666999999999999999999999999999999999999 8999999999888754
No 487
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=78.56 E-value=2.4 Score=39.92 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=16.3
Q ss_pred ccccCC-cEEEEccCCCccccc
Q psy10680 56 ICLSGR-DLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~-~vli~apTGsGKT~~ 76 (537)
.+..|+ -+.++|+-|||||..
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~ 67 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVL 67 (269)
T ss_pred HHhcCCceEEEEecCCCchhHH
Confidence 344555 678899999999976
No 488
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=78.54 E-value=0.98 Score=45.59 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+..++|+||||||||..
T Consensus 133 ~~glilI~GpTGSGKTTt 150 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL 150 (358)
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 556899999999999975
No 489
>KOG0345|consensus
Probab=78.45 E-value=4.3 Score=41.51 Aligned_cols=62 Identities=40% Similarity=0.655 Sum_probs=49.7
Q ss_pred eeecCchhHHHHhhhCCccc--ccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceee
Q psy10680 244 IVVATPGRLIDFLESGTTNV--NRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLF 305 (537)
Q Consensus 244 ~~saTp~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (537)
++.+||+++.+++......+ ..+..+++|+++++++.||...+..++.....+--.=.++..
T Consensus 134 IlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSAT 197 (567)
T KOG0345|consen 134 ILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSAT 197 (567)
T ss_pred EEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccch
Confidence 99999999999988744444 488999999999999999999999999887665544344433
No 490
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=78.40 E-value=3.6 Score=40.63 Aligned_cols=49 Identities=24% Similarity=0.248 Sum_probs=32.8
Q ss_pred CCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcc
Q psy10680 60 GRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAP 139 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~P 139 (537)
|+-+-+.+|+|+|||.. .++++...... +..++++-|
T Consensus 53 G~ivEi~G~~ssGKttL------------------------------------aL~~ia~~q~~-------g~~~a~ID~ 89 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTL------------------------------------ALHAIAEAQKQ-------GGICAFIDA 89 (322)
T ss_dssp TSEEEEEESTTSSHHHH------------------------------------HHHHHHHHHHT-------T-EEEEEES
T ss_pred CceEEEeCCCCCchhhh------------------------------------HHHHHHhhhcc-------cceeEEecC
Confidence 45677999999999975 55666655443 677899999
Q ss_pred cHHHHHHHHHHH
Q psy10680 140 TRELAQQIQAVI 151 (537)
Q Consensus 140 t~~L~~q~~~~~ 151 (537)
...|-....+.+
T Consensus 90 e~~ld~~~a~~l 101 (322)
T PF00154_consen 90 EHALDPEYAESL 101 (322)
T ss_dssp SS---HHHHHHT
T ss_pred cccchhhHHHhc
Confidence 888866665554
No 491
>KOG1513|consensus
Probab=78.21 E-value=3.3 Score=44.96 Aligned_cols=172 Identities=16% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCChhhhhhhhccc--------cCC--cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccch
Q psy10680 44 GKPTSIQAQSWPICL--------SGR--DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYI 113 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~--------~~~--~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (537)
..++..|-+|+-... +|. .++|-...|.||-.+ ..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRT-----------------------------------vA 307 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRT-----------------------------------VA 307 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCce-----------------------------------eE
Q ss_pred hhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcC-cchhHhHHHhccCCcEEEeCCchh
Q psy10680 114 LPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG-TSKMYQTRDLCRGAEIVVATPGRL 192 (537)
Q Consensus 114 l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~Ivv~Tp~~l 192 (537)
=-+++..++. ..++|.+.-+..|--+..+.+.++... ++.+..+..- .....-...-.-.-.|+++|...|
T Consensus 308 giIfeNyLkG-------RKrAlW~SVSsDLKfDAERDL~DigA~-~I~V~alnK~KYakIss~en~n~krGViFaTYtaL 379 (1300)
T KOG1513|consen 308 GIIFENYLKG-------RKRALWFSVSSDLKFDAERDLRDIGAT-GIAVHALNKFKYAKISSKENTNTKRGVIFATYTAL 379 (1300)
T ss_pred EEEehhhhcc-------cceeEEEEeccccccchhhchhhcCCC-CccceehhhcccccccccccCCccceeEEEeeHhh
Q ss_pred HHHHh-cCccccccee------------EEEecchhhhhh---------CCChHHHHHHHhhccccccccCCceeecC--
Q psy10680 193 IDFLE-SGTTNVNRIT------------YLVLDEADRMLD---------MGFEPQIRKIIQMTRTRDLCRGAEIVVAT-- 248 (537)
Q Consensus 193 ~~~l~-~~~~~~~~l~------------liV~DE~h~~~~---------~~~~~~l~~il~~~~~~~~~~~~~~~saT-- 248 (537)
.---. .....-.+++ +|||||||...+ ...+..+-.+-+.+|..... ..|||
T Consensus 380 IGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVV----YASATGA 455 (1300)
T KOG1513|consen 380 IGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVV----YASATGA 455 (1300)
T ss_pred hhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEE----EeeccCC
Q ss_pred -chhHHHHhhhCCcc
Q psy10680 249 -PGRLIDFLESGTTN 262 (537)
Q Consensus 249 -p~~~~~~l~~~~~~ 262 (537)
.++.-.++....++
T Consensus 456 sEPrNMaYM~RLGlW 470 (1300)
T KOG1513|consen 456 SEPRNMAYMVRLGLW 470 (1300)
T ss_pred CCcchhhhhhhhccc
No 492
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=78.20 E-value=6.1 Score=35.13 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.4
Q ss_pred EEEEccCCCccccc
Q psy10680 63 LIGIAQTGSGKTLS 76 (537)
Q Consensus 63 vli~apTGsGKT~~ 76 (537)
+++.||+|+|||..
T Consensus 3 ~~~~G~~G~GKTt~ 16 (173)
T cd03115 3 ILLVGLQGVGKTTT 16 (173)
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999976
No 493
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=78.09 E-value=4 Score=36.36 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=16.3
Q ss_pred CceEEEEcccHHHHHHHHHHHHH
Q psy10680 131 GPIALVLAPTRELAQQIQAVISI 153 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~ 153 (537)
+..++|++....+..++.+.+..
T Consensus 24 ~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 24 GGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred CCCeEEEEccCcCCHHHHHHHHH
Confidence 44588998888777777766553
No 494
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=77.98 E-value=2.1 Score=40.39 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=13.7
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
+++|.|++|||||..
T Consensus 15 r~viIG~sGSGKT~l 29 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTL 29 (241)
T ss_pred eEEEECCCCCCHHHH
Confidence 789999999999974
No 495
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=77.95 E-value=1 Score=42.40 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=15.1
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+||++.||||+|||.+
T Consensus 152 knVLFyGppGTGKTm~ 167 (368)
T COG1223 152 KNVLFYGPPGTGKTMM 167 (368)
T ss_pred ceeEEECCCCccHHHH
Confidence 7999999999999976
No 496
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=77.89 E-value=3.2 Score=39.81 Aligned_cols=15 Identities=33% Similarity=0.266 Sum_probs=12.4
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
=+=++||.|+|||-.
T Consensus 40 itEi~G~~gsGKTql 54 (256)
T PF08423_consen 40 ITEIVGESGSGKTQL 54 (256)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEEEecccccchH
Confidence 455799999999965
No 497
>KOG1133|consensus
Probab=77.87 E-value=10 Score=40.79 Aligned_cols=33 Identities=36% Similarity=0.338 Sum_probs=28.0
Q ss_pred CCChhhhhhhhcc----ccCCcEEEEccCCCcccccc
Q psy10680 45 KPTSIQAQSWPIC----LSGRDLIGIAQTGSGKTLSL 77 (537)
Q Consensus 45 ~~~~~Q~~ai~~~----~~~~~vli~apTGsGKT~~~ 77 (537)
+|+.+|.+.+..+ ..|+-.|+-.|||+|||+..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSL 51 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSL 51 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHH
Confidence 8999999877554 47888899999999999873
No 498
>PF14516 AAA_35: AAA-like domain
Probab=77.86 E-value=12 Score=37.34 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=26.0
Q ss_pred hhhhhhhhcccc-CCcEEEEccCCCccccc
Q psy10680 48 SIQAQSWPICLS-GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 48 ~~Q~~ai~~~~~-~~~vli~apTGsGKT~~ 76 (537)
+..++++..+.+ |..+.|.||=.+|||..
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl 47 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL 47 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH
Confidence 488999999887 89999999999999975
No 499
>KOG1533|consensus
Probab=77.84 E-value=2 Score=39.82 Aligned_cols=13 Identities=38% Similarity=0.549 Sum_probs=11.8
Q ss_pred EEEEccCCCcccc
Q psy10680 63 LIGIAQTGSGKTL 75 (537)
Q Consensus 63 vli~apTGsGKT~ 75 (537)
.+|.||+|||||.
T Consensus 5 qvVIGPPgSGKsT 17 (290)
T KOG1533|consen 5 QVVIGPPGSGKST 17 (290)
T ss_pred eEEEcCCCCCccc
Confidence 5899999999996
No 500
>KOG0055|consensus
Probab=77.66 E-value=1 Score=51.65 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=31.6
Q ss_pred cccceeEEEecchhhhhhCCChHHHHHHHhhccccccc
Q psy10680 202 NVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLC 239 (537)
Q Consensus 202 ~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~ 239 (537)
.+++.+.+.+|||=-.+|...+..+.+.++.+.....+
T Consensus 1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~ 1178 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTT 1178 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcE
Confidence 35778999999999999988888888888888775554
Done!