Query psy10680
Match_columns 537
No_of_seqs 164 out of 1916
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 15:55:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.6E-52 5.6E-57 434.8 29.3 379 14-509 48-434 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 3.1E-49 1.1E-53 408.9 28.4 385 19-514 12-414 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.9E-46 6.6E-51 387.2 24.8 367 20-503 35-403 (410)
4 1s2m_A Putative ATP-dependent 100.0 6.4E-46 2.2E-50 382.0 22.6 368 20-506 19-388 (400)
5 3eiq_A Eukaryotic initiation f 100.0 4.2E-46 1.4E-50 385.1 20.6 367 22-509 40-413 (414)
6 3sqw_A ATP-dependent RNA helic 100.0 2.4E-44 8.2E-49 387.2 25.7 376 20-496 15-411 (579)
7 1hv8_A Putative ATP-dependent 100.0 2.6E-44 9E-49 365.2 24.1 353 21-498 5-360 (367)
8 3i5x_A ATP-dependent RNA helic 100.0 3.4E-44 1.2E-48 385.5 25.9 367 29-496 79-462 (563)
9 1fuu_A Yeast initiation factor 100.0 1.9E-45 6.4E-50 377.6 14.5 370 20-507 19-390 (394)
10 1xti_A Probable ATP-dependent 100.0 3.2E-44 1.1E-48 368.0 23.1 369 20-505 6-380 (391)
11 3fht_A ATP-dependent RNA helic 100.0 1.4E-43 4.9E-48 365.7 25.4 368 16-503 19-400 (412)
12 2z0m_A 337AA long hypothetical 100.0 1.5E-43 5.3E-48 355.3 23.3 332 30-496 2-335 (337)
13 3pey_A ATP-dependent RNA helic 100.0 2.3E-43 8E-48 361.8 24.3 354 21-495 4-369 (395)
14 3fmp_B ATP-dependent RNA helic 100.0 7.5E-44 2.6E-48 375.2 14.4 361 17-497 87-461 (479)
15 2v1x_A ATP-dependent DNA helic 100.0 2.2E-42 7.4E-47 369.2 21.4 377 26-529 25-418 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 5.7E-42 2E-46 362.4 21.7 375 23-530 3-393 (523)
17 3fho_A ATP-dependent RNA helic 100.0 5.8E-42 2E-46 362.3 13.9 358 24-503 121-491 (508)
18 3oiy_A Reverse gyrase helicase 100.0 2.5E-41 8.5E-46 349.4 17.6 328 34-496 11-376 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 1.8E-39 6.1E-44 348.3 17.7 397 42-488 4-513 (556)
20 2ykg_A Probable ATP-dependent 100.0 3E-39 1E-43 355.8 17.0 413 35-490 4-523 (696)
21 3tbk_A RIG-I helicase domain; 100.0 6E-39 2.1E-43 344.0 18.7 396 45-491 4-515 (555)
22 2va8_A SSO2462, SKI2-type heli 100.0 3.5E-38 1.2E-42 347.6 21.4 349 21-484 7-409 (715)
23 2zj8_A DNA helicase, putative 100.0 5.1E-38 1.7E-42 346.2 21.3 340 23-484 2-388 (720)
24 4a2q_A RIG-I, retinoic acid in 100.0 7.6E-38 2.6E-42 348.2 22.8 406 40-486 243-752 (797)
25 3l9o_A ATP-dependent RNA helic 100.0 3.8E-38 1.3E-42 356.9 19.4 375 23-483 163-597 (1108)
26 2p6r_A Afuhel308 helicase; pro 100.0 3.2E-38 1.1E-42 346.8 17.6 343 24-484 3-389 (702)
27 2xgj_A ATP-dependent RNA helic 100.0 8E-37 2.7E-41 343.2 24.4 357 38-483 80-499 (1010)
28 4gl2_A Interferon-induced heli 100.0 1E-37 3.6E-42 343.7 16.7 398 45-484 7-520 (699)
29 4ddu_A Reverse gyrase; topoiso 100.0 2.1E-37 7.2E-42 350.8 18.2 328 36-496 70-503 (1104)
30 4a2w_A RIG-I, retinoic acid in 100.0 8.8E-37 3E-41 343.2 20.4 402 40-485 243-751 (936)
31 1wp9_A ATP-dependent RNA helic 100.0 2.4E-36 8.2E-41 318.0 21.8 387 45-486 9-478 (494)
32 4f92_B U5 small nuclear ribonu 100.0 5.3E-36 1.8E-40 350.6 19.6 396 4-491 882-1316(1724)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 4.6E-36 1.6E-40 340.0 18.5 330 33-497 46-468 (1054)
34 1gm5_A RECG; helicase, replica 100.0 5.9E-36 2E-40 326.2 18.1 332 32-497 356-710 (780)
35 1tf5_A Preprotein translocase 100.0 1.7E-35 5.8E-40 316.4 20.4 381 39-485 78-547 (844)
36 4a4z_A Antiviral helicase SKI2 100.0 8.3E-35 2.8E-39 326.9 24.0 384 35-481 30-490 (997)
37 4f92_B U5 small nuclear ribonu 100.0 1.3E-35 4.4E-40 347.4 18.1 345 42-492 76-482 (1724)
38 2oca_A DAR protein, ATP-depend 100.0 9E-35 3.1E-39 308.4 19.5 334 43-481 111-453 (510)
39 2eyq_A TRCF, transcription-rep 100.0 2.4E-33 8.1E-38 319.6 26.3 318 30-483 589-922 (1151)
40 2fsf_A Preprotein translocase 100.0 8.5E-34 2.9E-38 302.4 16.8 379 39-484 69-584 (853)
41 2fwr_A DNA repair protein RAD2 100.0 7.4E-34 2.5E-38 298.4 12.2 336 45-482 93-453 (472)
42 2jlq_A Serine protease subunit 100.0 7.3E-34 2.5E-38 295.5 11.3 287 42-482 1-310 (451)
43 2whx_A Serine protease/ntpase/ 100.0 1.3E-33 4.6E-38 302.3 13.2 322 27-505 155-503 (618)
44 1nkt_A Preprotein translocase 100.0 8.8E-33 3E-37 294.9 16.7 381 39-485 106-619 (922)
45 2wv9_A Flavivirin protease NS2 100.0 4.8E-34 1.6E-38 307.6 2.8 298 35-495 201-548 (673)
46 1yks_A Genome polyprotein [con 100.0 1.3E-33 4.3E-38 292.4 5.2 289 56-505 4-324 (440)
47 3o8b_A HCV NS3 protease/helica 100.0 8.8E-32 3E-36 285.6 12.9 290 45-496 217-531 (666)
48 3h1t_A Type I site-specific re 100.0 3.3E-31 1.1E-35 285.7 14.8 349 44-483 177-558 (590)
49 3fe2_A Probable ATP-dependent 100.0 2E-30 6.8E-35 247.4 17.0 206 13-258 20-227 (242)
50 2z83_A Helicase/nucleoside tri 100.0 1.8E-31 6.2E-36 277.9 7.2 281 54-491 15-323 (459)
51 2xau_A PRE-mRNA-splicing facto 100.0 4.3E-31 1.5E-35 289.8 7.4 336 20-484 70-444 (773)
52 1z63_A Helicase of the SNF2/RA 100.0 5.6E-30 1.9E-34 270.8 14.5 392 45-501 37-469 (500)
53 2v6i_A RNA helicase; membrane, 100.0 2.6E-30 8.9E-35 267.0 10.8 270 59-480 1-288 (431)
54 3dmq_A RNA polymerase-associat 100.0 8.1E-30 2.8E-34 287.0 15.5 124 373-497 501-627 (968)
55 3rc3_A ATP-dependent RNA helic 100.0 1.6E-29 5.5E-34 271.5 16.8 272 55-480 150-442 (677)
56 1vec_A ATP-dependent RNA helic 100.0 1.6E-28 5.5E-33 228.2 17.2 192 22-258 3-197 (206)
57 3iuy_A Probable ATP-dependent 100.0 1.4E-28 4.7E-33 232.5 13.7 196 22-258 19-218 (228)
58 1wrb_A DJVLGB; RNA helicase, D 100.0 5.7E-28 1.9E-32 232.0 18.0 203 20-258 21-229 (253)
59 1q0u_A Bstdead; DEAD protein, 100.0 1.5E-28 5.1E-33 230.8 13.0 192 22-258 4-201 (219)
60 3ber_A Probable ATP-dependent 100.0 4.7E-28 1.6E-32 231.7 16.2 193 20-257 41-236 (249)
61 2oxc_A Probable ATP-dependent 100.0 7E-28 2.4E-32 227.9 16.2 193 20-258 22-218 (230)
62 3ly5_A ATP-dependent RNA helic 100.0 4.8E-28 1.6E-32 233.5 14.9 197 20-257 50-251 (262)
63 3bor_A Human initiation factor 100.0 4.9E-28 1.7E-32 230.0 13.3 194 20-258 28-224 (237)
64 2gxq_A Heat resistant RNA depe 99.9 1.9E-27 6.3E-32 221.2 16.1 190 23-256 2-193 (207)
65 1qde_A EIF4A, translation init 99.9 1.6E-27 5.6E-32 224.5 14.7 192 21-258 13-206 (224)
66 3fmo_B ATP-dependent RNA helic 99.9 1.6E-27 5.3E-32 234.2 14.9 195 16-258 86-287 (300)
67 3mwy_W Chromo domain-containin 99.9 2.8E-27 9.7E-32 262.5 18.6 390 45-497 236-696 (800)
68 2pl3_A Probable ATP-dependent 99.9 3.8E-27 1.3E-31 223.8 16.9 197 20-258 23-222 (236)
69 1z3i_X Similar to RAD54-like; 99.9 1.9E-26 6.4E-31 249.8 23.5 108 374-482 415-527 (644)
70 1t6n_A Probable ATP-dependent 99.9 4.2E-27 1.4E-31 221.0 13.8 197 16-257 8-209 (220)
71 3dkp_A Probable ATP-dependent 99.9 7E-27 2.4E-31 223.3 12.4 195 20-258 23-230 (245)
72 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 2.9E-26 1E-30 256.2 18.1 153 44-250 270-439 (1038)
73 3jux_A Protein translocase sub 99.9 8.6E-24 2.9E-28 221.1 20.7 108 374-484 473-588 (822)
74 2jgn_A DBX, DDX3, ATP-dependen 99.9 2.5E-23 8.6E-28 189.1 9.8 138 374-512 45-182 (185)
75 2p6n_A ATP-dependent RNA helic 99.9 1.4E-22 4.9E-27 184.9 9.3 136 375-511 54-190 (191)
76 1c4o_A DNA nucleotide excision 99.9 1.4E-21 4.7E-26 211.4 18.1 117 374-492 438-559 (664)
77 2ipc_A Preprotein translocase 99.9 4.3E-21 1.5E-25 204.4 15.6 133 39-219 74-216 (997)
78 2hjv_A ATP-dependent RNA helic 99.8 1.8E-21 6.2E-26 173.3 10.2 124 373-497 33-156 (163)
79 1fuk_A Eukaryotic initiation f 99.8 6.6E-22 2.2E-26 176.6 6.9 131 374-505 29-159 (165)
80 1t5i_A C_terminal domain of A 99.8 1.6E-21 5.3E-26 175.2 7.1 133 374-507 30-163 (172)
81 2d7d_A Uvrabc system protein B 99.8 4.9E-20 1.7E-24 199.2 20.0 114 374-489 444-562 (661)
82 2rb4_A ATP-dependent RNA helic 99.8 3E-21 1E-25 174.1 8.6 124 374-498 33-162 (175)
83 3b6e_A Interferon-induced heli 99.8 2.4E-21 8E-26 180.9 7.9 149 41-227 29-184 (216)
84 3eaq_A Heat resistant RNA depe 99.8 4.7E-21 1.6E-25 178.1 9.7 125 372-497 28-152 (212)
85 3i32_A Heat resistant RNA depe 99.8 5.8E-20 2E-24 178.9 9.9 124 373-497 26-149 (300)
86 2yjt_D ATP-dependent RNA helic 99.7 4.8E-21 1.6E-25 171.8 0.0 123 374-497 29-151 (170)
87 1rif_A DAR protein, DNA helica 99.8 2.6E-19 8.7E-24 174.4 9.1 150 45-250 113-263 (282)
88 2vl7_A XPD; helicase, unknown 99.7 1.6E-17 5.6E-22 175.9 16.2 101 375-482 384-520 (540)
89 3llm_A ATP-dependent RNA helic 99.7 1.3E-17 4.4E-22 157.7 10.1 154 45-248 61-217 (235)
90 2fz4_A DNA repair protein RAD2 99.7 2.6E-17 9E-22 155.5 8.8 137 45-251 93-230 (237)
91 1z5z_A Helicase of the SNF2/RA 99.5 7E-15 2.4E-19 141.3 8.5 122 373-497 110-236 (271)
92 3crv_A XPD/RAD3 related DNA he 99.5 2E-14 6.7E-19 152.9 10.2 131 42-219 1-187 (551)
93 4a15_A XPD helicase, ATP-depen 99.2 1.6E-11 5.6E-16 131.5 6.2 81 45-167 3-87 (620)
94 1w36_D RECD, exodeoxyribonucle 98.4 2.9E-07 1E-11 98.4 7.5 138 47-235 151-288 (608)
95 2gk6_A Regulator of nonsense t 98.1 7.9E-06 2.7E-10 87.8 10.5 70 43-154 178-247 (624)
96 4b3f_X DNA-binding protein smu 98.0 3.6E-06 1.2E-10 90.9 6.4 68 44-154 188-256 (646)
97 2xzl_A ATP-dependent helicase 98.0 1.4E-05 4.6E-10 88.0 9.7 70 43-154 358-427 (802)
98 2wjy_A Regulator of nonsense t 97.9 2.2E-05 7.4E-10 86.2 9.9 70 43-154 354-423 (800)
99 3e1s_A Exodeoxyribonuclease V, 97.9 3.4E-05 1.2E-09 81.6 10.1 64 45-151 189-252 (574)
100 3upu_A ATP-dependent DNA helic 97.7 2.3E-05 7.9E-10 81.0 5.6 69 41-151 21-94 (459)
101 3vkw_A Replicase large subunit 96.5 0.0046 1.6E-07 62.4 7.5 60 134-217 187-246 (446)
102 3lfu_A DNA helicase II; SF1 he 96.3 0.0024 8.3E-08 68.8 4.9 72 44-156 8-79 (647)
103 2o0j_A Terminase, DNA packagin 96.3 0.0051 1.7E-07 61.2 6.8 71 45-156 163-233 (385)
104 2orw_A Thymidine kinase; TMTK, 96.2 0.0064 2.2E-07 54.0 5.9 17 60-76 3-19 (184)
105 3cpe_A Terminase, DNA packagin 95.9 0.03 1E-06 59.5 10.7 72 45-157 163-234 (592)
106 3ec2_A DNA replication protein 95.8 0.0088 3E-07 52.7 5.2 30 47-76 16-54 (180)
107 1xx6_A Thymidine kinase; NESG, 95.7 0.011 3.8E-07 52.8 5.2 18 59-76 7-24 (191)
108 2b8t_A Thymidine kinase; deoxy 95.5 0.0091 3.1E-07 54.6 4.0 18 59-76 11-28 (223)
109 1uaa_A REP helicase, protein ( 95.5 0.0062 2.1E-07 65.9 3.2 71 45-156 2-72 (673)
110 2kjq_A DNAA-related protein; s 95.4 0.013 4.4E-07 50.0 4.6 18 59-76 35-52 (149)
111 4a15_A XPD helicase, ATP-depen 95.4 0.045 1.5E-06 58.3 9.5 104 374-482 447-583 (620)
112 3hgt_A HDA1 complex subunit 3; 95.2 0.064 2.2E-06 51.5 8.8 104 373-482 123-236 (328)
113 1pjr_A PCRA; DNA repair, DNA r 94.8 0.023 7.9E-07 61.9 5.3 71 44-155 10-80 (724)
114 3te6_A Regulatory protein SIR3 94.7 0.061 2.1E-06 51.9 7.4 17 60-76 45-61 (318)
115 2j9r_A Thymidine kinase; TK1, 94.6 0.028 9.6E-07 50.7 4.5 17 60-76 28-44 (214)
116 2p65_A Hypothetical protein PF 94.3 0.11 3.7E-06 45.4 7.7 17 60-76 43-59 (187)
117 1jbk_A CLPB protein; beta barr 94.3 0.11 3.9E-06 45.3 7.9 16 61-76 44-59 (195)
118 3u4q_A ATP-dependent helicase/ 94.2 0.056 1.9E-06 62.5 6.8 107 45-196 10-116 (1232)
119 1w4r_A Thymidine kinase; type 93.8 0.056 1.9E-06 47.9 4.6 17 60-76 20-36 (195)
120 2v1u_A Cell division control p 93.6 0.074 2.5E-06 52.7 5.8 17 60-76 44-60 (387)
121 3e2i_A Thymidine kinase; Zn-bi 93.6 0.047 1.6E-06 49.2 3.8 18 59-76 27-44 (219)
122 1l8q_A Chromosomal replication 93.6 0.12 4.2E-06 50.0 7.1 17 60-76 37-53 (324)
123 1a5t_A Delta prime, HOLB; zinc 93.5 0.067 2.3E-06 52.3 5.0 31 46-76 3-40 (334)
124 2orv_A Thymidine kinase; TP4A 93.3 0.18 6.1E-06 45.9 7.1 17 60-76 19-35 (234)
125 3bos_A Putative DNA replicatio 92.7 0.15 5.1E-06 46.6 6.0 18 59-76 51-68 (242)
126 1d2n_A N-ethylmaleimide-sensit 92.5 0.52 1.8E-05 44.2 9.7 16 61-76 65-80 (272)
127 2z4s_A Chromosomal replication 92.0 0.26 8.9E-06 50.1 7.3 16 61-76 131-146 (440)
128 2qby_B CDC6 homolog 3, cell di 92.0 0.27 9.1E-06 48.7 7.3 16 61-76 46-61 (384)
129 3u61_B DNA polymerase accessor 91.7 0.16 5.6E-06 49.1 5.2 15 204-218 104-118 (324)
130 2q6t_A DNAB replication FORK h 91.5 0.25 8.4E-06 50.3 6.4 22 55-76 195-216 (444)
131 3crv_A XPD/RAD3 related DNA he 90.9 0.48 1.6E-05 49.6 8.1 102 375-483 393-531 (551)
132 2r6a_A DNAB helicase, replicat 90.3 0.38 1.3E-05 49.1 6.5 22 55-76 198-219 (454)
133 2zpa_A Uncharacterized protein 90.2 0.42 1.4E-05 50.7 6.8 32 45-76 175-208 (671)
134 4a1f_A DNAB helicase, replicat 90.1 0.15 5.1E-06 49.6 3.1 25 52-76 38-62 (338)
135 2qby_A CDC6 homolog 1, cell di 89.9 0.57 2E-05 46.1 7.4 17 60-76 45-61 (386)
136 1qvr_A CLPB protein; coiled co 88.5 0.65 2.2E-05 51.5 7.1 16 61-76 192-207 (854)
137 1fnn_A CDC6P, cell division co 88.3 0.48 1.6E-05 46.8 5.4 15 62-76 46-60 (389)
138 3pfi_A Holliday junction ATP-d 88.1 0.48 1.7E-05 46.0 5.1 16 61-76 56-71 (338)
139 2gno_A DNA polymerase III, gam 87.5 0.42 1.4E-05 45.8 4.2 16 61-76 19-34 (305)
140 3hjh_A Transcription-repair-co 87.5 1.1 3.7E-05 45.9 7.5 24 134-157 42-65 (483)
141 3co5_A Putative two-component 86.6 0.25 8.4E-06 41.4 1.8 19 58-76 25-43 (143)
142 3n70_A Transport activator; si 86.4 0.29 9.8E-06 41.1 2.1 19 58-76 22-40 (145)
143 1g5t_A COB(I)alamin adenosyltr 85.9 2.8 9.7E-05 37.0 8.3 50 204-257 119-172 (196)
144 3cmu_A Protein RECA, recombina 85.5 0.49 1.7E-05 56.4 4.0 19 58-76 1425-1443(2050)
145 2zr9_A Protein RECA, recombina 85.4 0.37 1.3E-05 47.2 2.6 20 57-76 58-77 (349)
146 2z43_A DNA repair and recombin 85.4 2.2 7.4E-05 41.1 8.1 19 58-76 105-123 (324)
147 2rb4_A ATP-dependent RNA helic 85.3 5.4 0.00018 34.2 9.9 72 131-212 34-109 (175)
148 3io5_A Recombination and repai 85.0 0.93 3.2E-05 43.4 5.0 19 57-76 26-44 (333)
149 3hr8_A Protein RECA; alpha and 84.5 0.42 1.4E-05 46.9 2.5 18 59-76 60-77 (356)
150 4b4t_J 26S protease regulatory 84.0 0.25 8.4E-06 49.2 0.6 17 60-76 182-198 (405)
151 2hjv_A ATP-dependent RNA helic 83.4 4.4 0.00015 34.3 8.4 73 131-213 35-111 (163)
152 2p6n_A ATP-dependent RNA helic 83.4 6 0.0002 34.7 9.5 73 131-213 54-130 (191)
153 4b4t_M 26S protease regulatory 83.4 0.27 9.3E-06 49.5 0.6 17 60-76 215-231 (434)
154 4b4t_L 26S protease subunit RP 83.0 0.26 9.1E-06 49.6 0.3 17 60-76 215-231 (437)
155 3kl4_A SRP54, signal recogniti 81.9 1.6 5.6E-05 43.8 5.7 17 60-76 97-113 (433)
156 1t5i_A C_terminal domain of A 81.7 5.3 0.00018 34.2 8.3 73 131-213 31-107 (172)
157 4b4t_K 26S protease regulatory 81.3 0.34 1.2E-05 48.7 0.4 17 60-76 206-222 (428)
158 2i1q_A DNA repair and recombin 80.5 2.4 8.3E-05 40.7 6.2 18 59-76 97-114 (322)
159 2qgz_A Helicase loader, putati 80.5 0.93 3.2E-05 43.5 3.2 17 60-76 152-168 (308)
160 2w58_A DNAI, primosome compone 80.1 1.3 4.4E-05 39.2 3.8 16 61-76 55-70 (202)
161 1fuk_A Eukaryotic initiation f 79.9 7.1 0.00024 33.0 8.5 73 131-213 30-106 (165)
162 3eaq_A Heat resistant RNA depe 79.8 7 0.00024 34.8 8.7 71 131-211 31-105 (212)
163 4b4t_I 26S protease regulatory 79.7 0.45 1.5E-05 47.6 0.6 16 61-76 217-232 (437)
164 1e9r_A Conjugal transfer prote 79.6 1.2 4.1E-05 45.0 3.9 18 59-76 52-69 (437)
165 3fe2_A Probable ATP-dependent 79.4 2.8 9.7E-05 38.2 6.1 70 242-311 153-222 (242)
166 3b85_A Phosphate starvation-in 78.3 1.1 3.7E-05 40.2 2.7 32 45-76 7-38 (208)
167 2dr3_A UPF0273 protein PH0284; 78.1 1.7 6E-05 39.5 4.2 20 57-76 20-39 (247)
168 3dm5_A SRP54, signal recogniti 77.7 3.7 0.00012 41.3 6.6 16 61-76 101-116 (443)
169 4b4t_H 26S protease regulatory 77.7 0.45 1.5E-05 48.1 -0.1 17 60-76 243-259 (467)
170 3cf2_A TER ATPase, transitiona 76.8 0.97 3.3E-05 49.2 2.2 85 18-107 470-556 (806)
171 1gm5_A RECG; helicase, replica 76.7 2.1 7.1E-05 46.7 4.8 78 373-450 415-496 (780)
172 2oap_1 GSPE-2, type II secreti 75.4 0.81 2.8E-05 47.3 1.1 20 57-76 257-276 (511)
173 2eyu_A Twitching motility prot 74.8 0.85 2.9E-05 42.6 1.0 20 57-76 22-41 (261)
174 3cf0_A Transitional endoplasmi 74.8 0.95 3.2E-05 43.2 1.4 19 58-76 47-65 (301)
175 3iuy_A Probable ATP-dependent 74.3 5.3 0.00018 35.8 6.3 67 242-308 144-210 (228)
176 3vaa_A Shikimate kinase, SK; s 73.8 1 3.6E-05 39.8 1.3 19 58-76 23-41 (199)
177 2qor_A Guanylate kinase; phosp 73.6 1.1 3.8E-05 39.8 1.5 21 56-76 8-28 (204)
178 2jgn_A DBX, DDX3, ATP-dependen 73.4 6.3 0.00022 34.2 6.4 71 131-211 46-120 (185)
179 3h4m_A Proteasome-activating n 73.4 1.1 3.7E-05 42.2 1.4 19 58-76 49-67 (285)
180 2bjv_A PSP operon transcriptio 73.3 1.4 4.7E-05 41.0 2.1 18 59-76 28-45 (265)
181 2zan_A Vacuolar protein sortin 73.2 1.3 4.5E-05 44.8 2.0 17 60-76 167-183 (444)
182 3iij_A Coilin-interacting nucl 73.1 1.2 4E-05 38.6 1.5 19 58-76 9-27 (180)
183 1kgd_A CASK, peripheral plasma 73.0 1.2 4.2E-05 38.6 1.6 18 59-76 4-21 (180)
184 1lvg_A Guanylate kinase, GMP k 72.9 1.1 3.8E-05 39.7 1.2 18 59-76 3-20 (198)
185 3nbx_X ATPase RAVA; AAA+ ATPas 72.7 1 3.5E-05 46.3 1.1 25 52-76 33-57 (500)
186 2qz4_A Paraplegin; AAA+, SPG7, 72.6 1.1 3.9E-05 41.3 1.3 18 59-76 38-55 (262)
187 2r44_A Uncharacterized protein 72.4 0.86 2.9E-05 44.0 0.4 22 55-76 41-62 (331)
188 3syl_A Protein CBBX; photosynt 72.4 1.2 4.1E-05 42.4 1.5 16 61-76 68-83 (309)
189 3b9p_A CG5977-PA, isoform A; A 72.3 1.2 4E-05 42.3 1.3 17 60-76 54-70 (297)
190 3t15_A Ribulose bisphosphate c 71.9 1.2 4.1E-05 42.3 1.3 16 61-76 37-52 (293)
191 3hws_A ATP-dependent CLP prote 71.5 1.3 4.3E-05 43.5 1.4 18 59-76 50-67 (363)
192 3trf_A Shikimate kinase, SK; a 71.0 1.3 4.4E-05 38.5 1.2 17 60-76 5-21 (185)
193 3tau_A Guanylate kinase, GMP k 70.8 1.3 4.6E-05 39.5 1.3 18 59-76 7-24 (208)
194 3cmw_A Protein RECA, recombina 70.8 2.5 8.6E-05 49.8 3.8 92 59-219 1430-1523(1706)
195 1zp6_A Hypothetical protein AT 70.7 1.2 4.1E-05 38.9 0.9 20 57-76 6-25 (191)
196 2gza_A Type IV secretion syste 70.7 1.4 4.6E-05 43.4 1.4 20 57-76 172-191 (361)
197 1ofh_A ATP-dependent HSL prote 70.6 1.4 4.7E-05 41.9 1.4 17 60-76 50-66 (310)
198 1lv7_A FTSH; alpha/beta domain 70.3 1.3 4.4E-05 41.0 1.1 16 61-76 46-61 (257)
199 1q0u_A Bstdead; DEAD protein, 69.8 8 0.00027 34.4 6.3 68 241-308 126-193 (219)
200 1xwi_A SKD1 protein; VPS4B, AA 69.6 1.3 4.6E-05 42.6 1.1 17 60-76 45-61 (322)
201 1qhx_A CPT, protein (chloramph 69.5 1.5 5E-05 37.8 1.2 17 60-76 3-19 (178)
202 1vec_A ATP-dependent RNA helic 69.5 9.5 0.00032 33.4 6.7 68 241-308 122-189 (206)
203 3eie_A Vacuolar protein sortin 69.4 1.4 4.9E-05 42.4 1.2 17 60-76 51-67 (322)
204 2j41_A Guanylate kinase; GMP, 69.2 1.5 5.2E-05 38.7 1.3 19 58-76 4-22 (207)
205 3a8t_A Adenylate isopentenyltr 68.8 1.5 5.1E-05 42.4 1.2 16 61-76 41-56 (339)
206 3lw7_A Adenylate kinase relate 68.6 1.5 5E-05 37.4 1.0 15 62-76 3-17 (179)
207 2qmh_A HPR kinase/phosphorylas 68.4 1.6 5.4E-05 38.7 1.2 18 59-76 33-50 (205)
208 1p9r_A General secretion pathw 68.4 2.9 9.9E-05 41.9 3.3 28 49-76 154-183 (418)
209 3uk6_A RUVB-like 2; hexameric 68.3 1.5 5.2E-05 42.9 1.2 17 60-76 70-86 (368)
210 2ewv_A Twitching motility prot 68.3 1.4 4.9E-05 43.4 1.0 20 57-76 133-152 (372)
211 1y63_A LMAJ004144AAA protein; 68.3 1.7 5.7E-05 37.9 1.3 18 59-76 9-26 (184)
212 3bh0_A DNAB-like replicative h 68.2 7.1 0.00024 37.3 6.0 24 53-76 61-84 (315)
213 2chg_A Replication factor C sm 68.2 1.7 5.8E-05 38.5 1.4 16 61-76 39-54 (226)
214 3bor_A Human initiation factor 68.1 8.6 0.00029 34.7 6.3 66 242-307 150-215 (237)
215 4ag6_A VIRB4 ATPase, type IV s 67.6 2.9 9.8E-05 41.5 3.1 18 59-76 34-51 (392)
216 2i4i_A ATP-dependent RNA helic 67.5 17 0.00057 35.8 8.8 71 131-211 276-350 (417)
217 3i32_A Heat resistant RNA depe 67.5 13 0.00046 35.1 7.6 71 131-211 28-102 (300)
218 3ly5_A ATP-dependent RNA helic 67.4 8.7 0.0003 35.4 6.2 71 242-312 177-248 (262)
219 3exa_A TRNA delta(2)-isopenten 67.4 1.7 5.9E-05 41.5 1.3 16 61-76 4-19 (322)
220 2pt7_A CAG-ALFA; ATPase, prote 67.4 1.6 5.6E-05 42.2 1.2 20 57-76 168-187 (330)
221 3tr0_A Guanylate kinase, GMP k 67.3 1.8 6E-05 38.3 1.3 19 58-76 5-23 (205)
222 2w0m_A SSO2452; RECA, SSPF, un 67.2 2.8 9.4E-05 37.7 2.6 21 56-76 19-39 (235)
223 1ojl_A Transcriptional regulat 66.9 2.3 7.7E-05 40.6 2.1 18 59-76 24-41 (304)
224 3foz_A TRNA delta(2)-isopenten 66.9 1.8 6.1E-05 41.3 1.3 15 62-76 12-26 (316)
225 2gxq_A Heat resistant RNA depe 66.8 9 0.00031 33.5 6.0 67 242-308 121-187 (207)
226 2r8r_A Sensor protein; KDPD, P 66.7 3.6 0.00012 37.2 3.2 18 59-76 4-22 (228)
227 3ney_A 55 kDa erythrocyte memb 66.4 2.1 7.2E-05 37.9 1.6 19 58-76 17-35 (197)
228 2qp9_X Vacuolar protein sortin 66.3 1.9 6.4E-05 42.3 1.3 17 60-76 84-100 (355)
229 3jvv_A Twitching mobility prot 66.2 1.6 5.6E-05 42.6 0.9 18 59-76 122-139 (356)
230 2zts_A Putative uncharacterize 66.2 2.2 7.4E-05 38.9 1.7 20 57-76 27-46 (251)
231 1tue_A Replication protein E1; 66.1 2 6.9E-05 38.3 1.4 16 61-76 59-74 (212)
232 4gp7_A Metallophosphoesterase; 65.9 1.8 6.3E-05 37.2 1.1 20 57-76 6-25 (171)
233 1kag_A SKI, shikimate kinase I 65.8 2 6.9E-05 36.7 1.3 17 60-76 4-20 (173)
234 2d7d_A Uvrabc system protein B 65.6 30 0.001 36.8 10.7 78 131-218 445-526 (661)
235 2ze6_A Isopentenyl transferase 65.4 1.8 6.2E-05 40.0 1.0 15 62-76 3-17 (253)
236 1um8_A ATP-dependent CLP prote 65.1 2.1 7.1E-05 42.2 1.4 17 60-76 72-88 (376)
237 2c9o_A RUVB-like 1; hexameric 65.1 1.9 6.6E-05 43.8 1.2 18 59-76 62-79 (456)
238 3fht_A ATP-dependent RNA helic 65.0 20 0.00067 35.1 8.7 72 131-212 266-341 (412)
239 2r62_A Cell division protease 64.9 1.2 4.1E-05 41.5 -0.4 17 60-76 44-60 (268)
240 3i5x_A ATP-dependent RNA helic 64.9 17 0.00059 37.6 8.6 76 131-213 339-418 (563)
241 2oxc_A Probable ATP-dependent 64.9 11 0.00037 33.9 6.2 65 241-305 142-207 (230)
242 1ex7_A Guanylate kinase; subst 64.8 2.2 7.4E-05 37.5 1.3 16 61-76 2-17 (186)
243 1ixz_A ATP-dependent metallopr 64.7 2 6.7E-05 39.6 1.1 16 61-76 50-65 (254)
244 1kht_A Adenylate kinase; phosp 64.6 2.1 7.1E-05 37.2 1.2 17 60-76 3-19 (192)
245 1xti_A Probable ATP-dependent 64.2 22 0.00076 34.4 8.9 74 131-214 250-327 (391)
246 4a74_A DNA repair and recombin 63.8 5.4 0.00019 35.6 4.0 21 56-76 21-41 (231)
247 3fmo_B ATP-dependent RNA helic 63.8 7.6 0.00026 36.7 5.1 71 241-311 210-282 (300)
248 3sqw_A ATP-dependent RNA helic 63.7 19 0.00064 37.6 8.6 77 131-214 288-368 (579)
249 1g8p_A Magnesium-chelatase 38 63.6 1.9 6.4E-05 41.8 0.8 17 60-76 45-61 (350)
250 1ly1_A Polynucleotide kinase; 63.4 2.1 7.2E-05 36.7 1.0 15 62-76 4-18 (181)
251 3lnc_A Guanylate kinase, GMP k 63.3 2.5 8.4E-05 38.3 1.5 20 57-76 24-43 (231)
252 3pey_A ATP-dependent RNA helic 63.2 23 0.00079 34.2 8.9 75 131-215 243-321 (395)
253 3cm0_A Adenylate kinase; ATP-b 63.1 1.8 6.3E-05 37.5 0.5 18 59-76 3-20 (186)
254 2eyq_A TRCF, transcription-rep 63.1 12 0.0004 42.9 7.3 78 131-216 812-893 (1151)
255 3kb2_A SPBC2 prophage-derived 62.9 2.2 7.5E-05 36.3 1.0 15 62-76 3-17 (173)
256 3d8b_A Fidgetin-like protein 1 62.9 2.3 7.9E-05 41.6 1.3 17 60-76 117-133 (357)
257 1z6g_A Guanylate kinase; struc 62.8 2.7 9.4E-05 37.8 1.7 20 57-76 20-39 (218)
258 1hqc_A RUVB; extended AAA-ATPa 62.4 2.3 7.8E-05 40.7 1.1 16 61-76 39-54 (324)
259 1u94_A RECA protein, recombina 62.1 4.6 0.00016 39.4 3.3 20 57-76 60-79 (356)
260 3a00_A Guanylate kinase, GMP k 62.1 2.6 8.8E-05 36.7 1.3 16 61-76 2-17 (186)
261 3bgw_A DNAB-like replicative h 62.1 7.1 0.00024 39.4 4.8 22 55-76 192-213 (444)
262 1njg_A DNA polymerase III subu 61.5 2.4 8.3E-05 38.1 1.1 15 62-76 47-61 (250)
263 1xp8_A RECA protein, recombina 61.3 4.8 0.00016 39.5 3.2 20 57-76 71-90 (366)
264 3vfd_A Spastin; ATPase, microt 61.3 2.5 8.6E-05 41.8 1.2 17 60-76 148-164 (389)
265 4fcw_A Chaperone protein CLPB; 61.2 2.3 8E-05 40.3 1.0 16 61-76 48-63 (311)
266 1knq_A Gluconate kinase; ALFA/ 61.0 2.4 8.3E-05 36.3 0.9 18 59-76 7-24 (175)
267 1hv8_A Putative ATP-dependent 60.7 28 0.00094 33.3 8.8 73 131-213 238-314 (367)
268 4eun_A Thermoresistant glucoki 60.5 2.8 9.6E-05 37.0 1.3 18 59-76 28-45 (200)
269 2x8a_A Nuclear valosin-contain 60.5 2.6 8.9E-05 39.5 1.1 52 20-76 5-60 (274)
270 3crm_A TRNA delta(2)-isopenten 60.5 2.8 9.4E-05 40.3 1.3 15 62-76 7-21 (323)
271 3ber_A Probable ATP-dependent 60.4 14 0.00048 33.6 6.2 68 241-308 161-229 (249)
272 2v54_A DTMP kinase, thymidylat 60.2 2.9 9.9E-05 36.8 1.3 18 59-76 3-20 (204)
273 2db3_A ATP-dependent RNA helic 60.2 13 0.00044 37.2 6.3 53 241-293 179-231 (434)
274 1sxj_D Activator 1 41 kDa subu 60.2 3.2 0.00011 40.1 1.7 16 61-76 59-74 (353)
275 2rhm_A Putative kinase; P-loop 60.1 2.5 8.7E-05 36.7 0.9 17 60-76 5-21 (193)
276 1qde_A EIF4A, translation init 60.0 15 0.00053 32.5 6.3 67 242-308 132-198 (224)
277 2px0_A Flagellar biosynthesis 59.5 5.8 0.0002 37.6 3.4 18 59-76 104-121 (296)
278 1s2m_A Putative ATP-dependent 59.5 29 0.00099 33.8 8.8 72 131-212 258-333 (400)
279 2qt1_A Nicotinamide riboside k 58.7 2.6 9E-05 37.3 0.8 22 55-76 16-37 (207)
280 2v1x_A ATP-dependent DNA helic 58.6 29 0.00098 36.4 8.9 71 131-211 267-341 (591)
281 2c95_A Adenylate kinase 1; tra 58.6 3.1 0.0001 36.3 1.2 18 59-76 8-25 (196)
282 1iy2_A ATP-dependent metallopr 58.6 2.9 9.9E-05 39.1 1.1 16 61-76 74-89 (278)
283 2v6i_A RNA helicase; membrane, 58.5 13 0.00046 37.1 6.1 55 131-189 171-225 (431)
284 3d3q_A TRNA delta(2)-isopenten 58.3 3.2 0.00011 40.2 1.3 15 62-76 9-23 (340)
285 2j0s_A ATP-dependent RNA helic 58.2 30 0.001 33.8 8.7 72 131-212 276-351 (410)
286 1znw_A Guanylate kinase, GMP k 58.2 3.5 0.00012 36.5 1.6 21 56-76 16-36 (207)
287 1oyw_A RECQ helicase, ATP-depe 58.0 25 0.00087 36.1 8.3 72 131-212 236-311 (523)
288 1m7g_A Adenylylsulfate kinase; 57.5 4.1 0.00014 36.2 1.8 30 46-76 12-41 (211)
289 1s96_A Guanylate kinase, GMP k 57.5 3.7 0.00013 37.0 1.6 21 56-76 12-32 (219)
290 2ehv_A Hypothetical protein PH 57.4 3.5 0.00012 37.5 1.4 21 56-76 26-46 (251)
291 1rj9_A FTSY, signal recognitio 57.3 6.9 0.00024 37.2 3.5 18 59-76 101-118 (304)
292 1n0w_A DNA repair protein RAD5 57.2 9.4 0.00032 34.4 4.4 21 56-76 20-40 (243)
293 1zd8_A GTP:AMP phosphotransfer 57.2 3.3 0.00011 37.3 1.2 17 60-76 7-23 (227)
294 1cr0_A DNA primase/helicase; R 57.0 9.1 0.00031 36.0 4.3 22 55-76 30-51 (296)
295 1gvn_B Zeta; postsegregational 56.6 3.3 0.00011 39.1 1.1 16 61-76 34-49 (287)
296 1zak_A Adenylate kinase; ATP:A 56.6 3.7 0.00013 36.8 1.4 17 60-76 5-21 (222)
297 3fb4_A Adenylate kinase; psych 56.4 3.4 0.00011 36.8 1.1 15 62-76 2-16 (216)
298 1nij_A Hypothetical protein YJ 56.3 6.7 0.00023 37.5 3.3 15 62-76 6-20 (318)
299 3hu3_A Transitional endoplasmi 56.3 3.5 0.00012 42.2 1.3 17 60-76 238-254 (489)
300 3f9v_A Minichromosome maintena 56.3 4.1 0.00014 42.9 1.9 15 62-76 329-343 (595)
301 3eph_A TRNA isopentenyltransfe 56.2 3.5 0.00012 40.8 1.3 15 62-76 4-18 (409)
302 1aky_A Adenylate kinase; ATP:A 56.2 3.6 0.00012 36.8 1.3 17 60-76 4-20 (220)
303 3uie_A Adenylyl-sulfate kinase 56.2 3.2 0.00011 36.6 0.9 31 45-76 11-41 (200)
304 3pvs_A Replication-associated 56.0 3.3 0.00011 41.9 1.1 16 61-76 51-66 (447)
305 3dl0_A Adenylate kinase; phosp 56.0 3.5 0.00012 36.8 1.1 15 62-76 2-16 (216)
306 1wrb_A DJVLGB; RNA helicase, D 55.8 18 0.00061 32.9 6.1 52 241-292 150-201 (253)
307 3u4q_B ATP-dependent helicase/ 55.8 5.5 0.00019 45.7 3.0 22 428-452 587-608 (1166)
308 1via_A Shikimate kinase; struc 55.7 3.7 0.00013 35.1 1.2 15 62-76 6-20 (175)
309 3t61_A Gluconokinase; PSI-biol 55.3 3.5 0.00012 36.3 1.0 16 61-76 19-34 (202)
310 1u0j_A DNA replication protein 55.3 4.1 0.00014 37.9 1.5 15 62-76 106-120 (267)
311 2bdt_A BH3686; alpha-beta prot 55.3 2.9 0.0001 36.3 0.5 16 61-76 3-18 (189)
312 1v5w_A DMC1, meiotic recombina 55.2 8.2 0.00028 37.4 3.7 18 59-76 121-138 (343)
313 1c4o_A DNA nucleotide excision 55.1 53 0.0018 34.9 10.3 77 131-217 439-519 (664)
314 3pxg_A Negative regulator of g 55.1 3.8 0.00013 41.7 1.4 17 60-76 201-217 (468)
315 1tev_A UMP-CMP kinase; ploop, 54.9 3.4 0.00012 35.9 0.8 16 61-76 4-19 (196)
316 2iyv_A Shikimate kinase, SK; t 54.6 4.1 0.00014 35.1 1.3 16 61-76 3-18 (184)
317 2bwj_A Adenylate kinase 5; pho 54.5 3.4 0.00012 36.1 0.8 18 59-76 11-28 (199)
318 1g41_A Heat shock protein HSLU 54.3 4.2 0.00014 41.0 1.4 17 60-76 50-66 (444)
319 1in4_A RUVB, holliday junction 54.1 3.9 0.00013 39.5 1.2 16 61-76 52-67 (334)
320 2ce7_A Cell division protein F 54.1 3.8 0.00013 41.8 1.1 16 61-76 50-65 (476)
321 1yks_A Genome polyprotein [con 54.1 15 0.00052 36.8 5.6 68 131-210 177-245 (440)
322 2cvh_A DNA repair and recombin 53.9 4.8 0.00016 35.7 1.7 21 56-76 16-36 (220)
323 2cdn_A Adenylate kinase; phosp 53.9 4.2 0.00014 35.7 1.3 16 61-76 21-36 (201)
324 1nks_A Adenylate kinase; therm 53.9 3.8 0.00013 35.5 1.0 15 62-76 3-17 (194)
325 1zuh_A Shikimate kinase; alpha 53.5 4 0.00014 34.6 1.1 16 61-76 8-23 (168)
326 3oiy_A Reverse gyrase helicase 53.5 8.9 0.00031 37.9 3.8 77 373-450 62-145 (414)
327 3nwj_A ATSK2; P loop, shikimat 53.4 4.4 0.00015 37.4 1.3 17 60-76 48-64 (250)
328 3c8u_A Fructokinase; YP_612366 53.2 4.2 0.00014 36.1 1.2 18 59-76 21-38 (208)
329 2pl3_A Probable ATP-dependent 53.1 22 0.00075 31.8 6.1 68 241-308 146-214 (236)
330 2vli_A Antibiotic resistance p 53.0 4.2 0.00014 34.9 1.1 17 60-76 5-21 (183)
331 3nwn_A Kinesin-like protein KI 52.8 4.4 0.00015 39.5 1.3 28 49-76 84-121 (359)
332 3tif_A Uncharacterized ABC tra 52.7 4.7 0.00016 36.7 1.5 20 57-76 28-47 (235)
333 1e6c_A Shikimate kinase; phosp 52.6 4.5 0.00015 34.4 1.2 16 61-76 3-18 (173)
334 3be4_A Adenylate kinase; malar 52.5 4.5 0.00015 36.1 1.3 17 60-76 5-21 (217)
335 1f2t_A RAD50 ABC-ATPase; DNA d 52.4 4.7 0.00016 33.7 1.3 16 61-76 24-39 (149)
336 2ius_A DNA translocase FTSK; n 52.3 6.4 0.00022 40.4 2.5 20 57-76 164-183 (512)
337 2wwf_A Thymidilate kinase, put 52.2 4.9 0.00017 35.5 1.4 18 59-76 9-26 (212)
338 2pt5_A Shikimate kinase, SK; a 52.0 4.4 0.00015 34.2 1.1 15 62-76 2-16 (168)
339 1ye8_A Protein THEP1, hypothet 51.9 4.9 0.00017 34.8 1.4 15 62-76 2-16 (178)
340 1c9k_A COBU, adenosylcobinamid 51.9 8.4 0.00029 33.4 2.8 14 63-76 2-15 (180)
341 2plr_A DTMP kinase, probable t 51.8 4.2 0.00014 35.9 0.9 18 59-76 3-20 (213)
342 2pez_A Bifunctional 3'-phospho 51.6 4.3 0.00015 34.9 0.9 18 59-76 4-21 (179)
343 1w36_B RECB, exodeoxyribonucle 51.5 17 0.00059 41.6 6.2 59 62-155 18-80 (1180)
344 1bg2_A Kinesin; motor protein, 51.5 4.9 0.00017 38.7 1.4 32 45-76 53-94 (325)
345 1pzn_A RAD51, DNA repair and r 51.4 11 0.00037 36.6 3.9 18 59-76 130-147 (349)
346 1qf9_A UMP/CMP kinase, protein 51.4 4.4 0.00015 35.0 1.0 15 62-76 8-22 (194)
347 3b9q_A Chloroplast SRP recepto 51.3 7.2 0.00025 37.0 2.6 19 58-76 98-116 (302)
348 2v9p_A Replication protein E1; 51.2 5.4 0.00019 37.9 1.6 20 57-76 123-142 (305)
349 2r2a_A Uncharacterized protein 51.1 4.8 0.00016 35.6 1.2 15 62-76 7-21 (199)
350 2yvu_A Probable adenylyl-sulfa 51.0 4.4 0.00015 35.1 0.9 18 59-76 12-29 (186)
351 2chq_A Replication factor C sm 50.8 5.9 0.0002 37.5 1.8 15 62-76 40-54 (319)
352 1iqp_A RFCS; clamp loader, ext 50.7 4.6 0.00016 38.4 1.1 15 62-76 48-62 (327)
353 1e4v_A Adenylate kinase; trans 50.6 4.7 0.00016 35.9 1.1 15 62-76 2-16 (214)
354 1ak2_A Adenylate kinase isoenz 50.3 5.1 0.00018 36.2 1.3 17 60-76 16-32 (233)
355 3sr0_A Adenylate kinase; phosp 50.3 5.1 0.00017 35.7 1.2 15 62-76 2-16 (206)
356 1vma_A Cell division protein F 50.2 8.5 0.00029 36.6 2.8 17 60-76 104-120 (306)
357 3lda_A DNA repair protein RAD5 50.1 13 0.00045 36.8 4.3 18 59-76 177-194 (400)
358 1nn5_A Similar to deoxythymidy 50.0 5.2 0.00018 35.4 1.3 18 59-76 8-25 (215)
359 1goj_A Kinesin, kinesin heavy 49.9 5.5 0.00019 38.8 1.5 32 45-76 56-97 (355)
360 3t0q_A AGR253WP; kinesin, alph 49.9 6.4 0.00022 38.2 2.0 32 45-76 62-102 (349)
361 2jlq_A Serine protease subunit 49.9 31 0.001 34.6 7.2 69 131-210 188-256 (451)
362 3asz_A Uridine kinase; cytidin 49.8 4.6 0.00016 35.7 0.9 18 59-76 5-22 (211)
363 2jaq_A Deoxyguanosine kinase; 49.7 5 0.00017 35.1 1.1 15 62-76 2-16 (205)
364 1cke_A CK, MSSA, protein (cyti 49.7 5.2 0.00018 35.8 1.2 16 61-76 6-21 (227)
365 3m6a_A ATP-dependent protease 49.6 5.1 0.00018 41.6 1.3 18 59-76 107-124 (543)
366 1f9v_A Kinesin-like protein KA 49.5 6.4 0.00022 38.2 1.9 32 45-76 61-101 (347)
367 3dc4_A Kinesin-like protein NO 49.5 5 0.00017 38.9 1.1 32 45-76 70-111 (344)
368 2xau_A PRE-mRNA-splicing facto 49.2 44 0.0015 36.2 8.7 75 131-211 303-393 (773)
369 2cbz_A Multidrug resistance-as 49.2 6.1 0.00021 36.0 1.6 20 57-76 28-47 (237)
370 1sxj_A Activator 1 95 kDa subu 49.0 5 0.00017 41.4 1.1 16 61-76 78-93 (516)
371 1ukz_A Uridylate kinase; trans 48.9 5.1 0.00018 35.2 1.0 15 62-76 17-31 (203)
372 3a4m_A L-seryl-tRNA(SEC) kinas 48.9 4.9 0.00017 37.2 0.9 16 61-76 5-20 (260)
373 3b6u_A Kinesin-like protein KI 48.6 5.7 0.00019 38.9 1.3 32 45-76 77-118 (372)
374 2y65_A Kinesin, kinesin heavy 48.5 5.7 0.0002 38.8 1.4 32 45-76 60-101 (365)
375 1wp9_A ATP-dependent RNA helic 48.5 39 0.0013 33.5 7.8 75 131-215 361-447 (494)
376 3bfn_A Kinesin-like protein KI 48.3 6.3 0.00022 38.8 1.6 32 45-76 74-115 (388)
377 1t5c_A CENP-E protein, centrom 48.2 5.8 0.0002 38.5 1.3 32 45-76 53-94 (349)
378 3lre_A Kinesin-like protein KI 48.2 6.1 0.00021 38.5 1.5 32 45-76 81-122 (355)
379 2vvg_A Kinesin-2; motor protei 48.1 5.9 0.0002 38.5 1.4 32 45-76 65-106 (350)
380 4a14_A Kinesin, kinesin-like p 48.0 5.9 0.0002 38.4 1.3 32 45-76 59-100 (344)
381 1sgw_A Putative ABC transporte 47.9 6.6 0.00023 35.2 1.6 20 57-76 32-51 (214)
382 1nlf_A Regulatory protein REPA 47.7 5.5 0.00019 37.2 1.1 23 54-76 24-46 (279)
383 4akg_A Glutathione S-transfera 47.6 4.8 0.00016 49.9 0.7 20 57-76 1264-1283(2695)
384 2yjt_D ATP-dependent RNA helic 53.2 3.9 0.00013 34.9 0.0 72 131-212 30-105 (170)
385 2h58_A Kinesin-like protein KI 47.3 6.1 0.00021 38.0 1.3 32 45-76 57-97 (330)
386 3pxi_A Negative regulator of g 47.3 5.9 0.0002 43.1 1.4 17 60-76 201-217 (758)
387 1jjv_A Dephospho-COA kinase; P 47.2 5.7 0.00019 35.0 1.0 15 62-76 4-18 (206)
388 2p5t_B PEZT; postsegregational 47.2 4.4 0.00015 37.3 0.3 17 60-76 32-48 (253)
389 2pcj_A ABC transporter, lipopr 47.2 6.5 0.00022 35.5 1.4 20 57-76 27-46 (224)
390 1v8k_A Kinesin-like protein KI 47.1 6.1 0.00021 39.2 1.3 32 45-76 130-171 (410)
391 3gbj_A KIF13B protein; kinesin 47.1 6.2 0.00021 38.4 1.3 31 46-76 69-109 (354)
392 3umf_A Adenylate kinase; rossm 47.1 5.8 0.0002 35.6 1.1 18 59-76 28-45 (217)
393 3kta_A Chromosome segregation 47.0 6.3 0.00021 33.9 1.3 15 62-76 28-42 (182)
394 2if2_A Dephospho-COA kinase; a 46.9 5.7 0.0002 34.9 1.0 15 62-76 3-17 (204)
395 1zu4_A FTSY; GTPase, signal re 46.8 10 0.00035 36.3 2.8 18 59-76 104-121 (320)
396 3cob_A Kinesin heavy chain-lik 46.8 6.1 0.00021 38.7 1.2 32 45-76 56-96 (369)
397 2nr8_A Kinesin-like protein KI 46.7 6.3 0.00022 38.4 1.3 29 48-76 82-120 (358)
398 2zfi_A Kinesin-like protein KI 46.7 6.4 0.00022 38.5 1.4 29 48-76 68-106 (366)
399 3cf2_A TER ATPase, transitiona 46.6 5.7 0.0002 43.2 1.1 16 61-76 239-254 (806)
400 1x88_A Kinesin-like protein KI 46.6 6.3 0.00022 38.4 1.3 33 45-77 64-106 (359)
401 3tlx_A Adenylate kinase 2; str 46.6 6.9 0.00023 35.7 1.5 18 59-76 28-45 (243)
402 2pbr_A DTMP kinase, thymidylat 46.5 5.9 0.0002 34.3 1.0 15 62-76 2-16 (195)
403 3gfo_A Cobalt import ATP-bindi 46.2 6.9 0.00023 36.6 1.5 20 57-76 31-50 (275)
404 2dhr_A FTSH; AAA+ protein, hex 46.2 5.9 0.0002 40.6 1.1 16 61-76 65-80 (499)
405 2pze_A Cystic fibrosis transme 46.1 7.2 0.00025 35.3 1.6 20 57-76 31-50 (229)
406 1xjc_A MOBB protein homolog; s 46.0 12 0.00043 32.0 3.0 15 62-76 6-20 (169)
407 1sxj_C Activator 1 40 kDa subu 45.8 6.2 0.00021 38.0 1.1 15 62-76 48-62 (340)
408 4etp_A Kinesin-like protein KA 45.6 6.4 0.00022 39.1 1.2 32 45-76 117-157 (403)
409 2heh_A KIF2C protein; kinesin, 45.5 6.8 0.00023 38.6 1.3 32 45-76 110-151 (387)
410 4e22_A Cytidylate kinase; P-lo 45.4 6.8 0.00023 36.0 1.3 18 59-76 26-43 (252)
411 1g6h_A High-affinity branched- 45.4 7.1 0.00024 36.0 1.4 20 57-76 30-49 (257)
412 2ghi_A Transport protein; mult 45.4 7.5 0.00026 36.0 1.6 20 57-76 43-62 (260)
413 3u06_A Protein claret segregat 45.4 6.4 0.00022 39.1 1.2 32 45-76 115-155 (412)
414 2og2_A Putative signal recogni 45.3 10 0.00035 37.0 2.6 18 59-76 156-173 (359)
415 1htw_A HI0065; nucleotide-bind 45.2 7 0.00024 33.1 1.2 19 58-76 31-49 (158)
416 2rep_A Kinesin-like protein KI 45.2 7.9 0.00027 38.0 1.8 32 45-76 92-132 (376)
417 1ypw_A Transitional endoplasmi 45.1 5.6 0.00019 43.6 0.8 19 58-76 236-254 (806)
418 3nh6_A ATP-binding cassette SU 45.0 5.9 0.0002 37.7 0.8 20 57-76 77-96 (306)
419 4g1u_C Hemin import ATP-bindin 44.9 7.4 0.00025 36.2 1.5 20 57-76 34-53 (266)
420 2xb4_A Adenylate kinase; ATP-b 44.9 6.6 0.00023 35.2 1.1 15 62-76 2-16 (223)
421 2z0h_A DTMP kinase, thymidylat 44.9 6.5 0.00022 34.1 1.0 14 63-76 3-16 (197)
422 2ff7_A Alpha-hemolysin translo 44.7 7.8 0.00027 35.5 1.6 20 57-76 32-51 (247)
423 3auy_A DNA double-strand break 44.5 6.9 0.00024 38.3 1.3 16 61-76 26-41 (371)
424 3e70_C DPA, signal recognition 44.5 11 0.00036 36.3 2.5 18 59-76 128-145 (328)
425 1mv5_A LMRA, multidrug resista 44.4 7 0.00024 35.7 1.2 20 57-76 25-44 (243)
426 1q57_A DNA primase/helicase; d 44.3 15 0.00051 37.6 3.9 22 55-76 237-258 (503)
427 2wv9_A Flavivirin protease NS2 44.2 28 0.00095 37.1 6.0 68 131-210 410-478 (673)
428 1ji0_A ABC transporter; ATP bi 44.2 7.7 0.00026 35.4 1.4 20 57-76 29-48 (240)
429 1uf9_A TT1252 protein; P-loop, 44.2 6.7 0.00023 34.2 1.0 15 62-76 10-24 (203)
430 2wbe_C Bipolar kinesin KRP-130 44.2 6.7 0.00023 38.5 1.1 33 45-77 76-118 (373)
431 3k1j_A LON protease, ATP-depen 44.0 7.4 0.00025 41.0 1.5 21 56-76 56-76 (604)
432 1ypw_A Transitional endoplasmi 44.0 4.6 0.00016 44.2 -0.1 19 58-76 509-527 (806)
433 3qf7_A RAD50; ABC-ATPase, ATPa 43.9 7.3 0.00025 38.1 1.3 15 62-76 25-39 (365)
434 2oca_A DAR protein, ATP-depend 43.7 58 0.002 33.0 8.3 76 131-215 347-426 (510)
435 1sxj_E Activator 1 40 kDa subu 43.7 7.6 0.00026 37.5 1.4 15 62-76 38-52 (354)
436 2bbw_A Adenylate kinase 4, AK4 43.6 7.9 0.00027 35.3 1.4 17 60-76 27-43 (246)
437 1b0u_A Histidine permease; ABC 43.4 8.1 0.00028 35.8 1.5 20 57-76 29-48 (262)
438 2i3b_A HCR-ntpase, human cance 43.2 8.7 0.0003 33.6 1.6 17 60-76 1-17 (189)
439 1vpl_A ABC transporter, ATP-bi 42.8 8.4 0.00029 35.6 1.5 20 57-76 38-57 (256)
440 2zu0_C Probable ATP-dependent 42.7 8.4 0.00029 35.8 1.5 20 57-76 43-62 (267)
441 2yz2_A Putative ABC transporte 42.7 8.4 0.00029 35.8 1.5 20 57-76 30-49 (266)
442 2nq2_C Hypothetical ABC transp 42.6 8.4 0.00029 35.5 1.4 20 57-76 28-47 (253)
443 4f4c_A Multidrug resistance pr 42.5 13 0.00046 43.1 3.4 20 57-76 1102-1121(1321)
444 2iut_A DNA translocase FTSK; n 42.5 11 0.00039 39.0 2.5 19 58-76 212-230 (574)
445 2d2e_A SUFC protein; ABC-ATPas 42.3 8.5 0.00029 35.3 1.4 20 57-76 26-45 (250)
446 2ixe_A Antigen peptide transpo 42.3 8.6 0.00029 35.8 1.5 20 57-76 42-61 (271)
447 2olj_A Amino acid ABC transpor 42.1 8.7 0.0003 35.6 1.5 20 57-76 47-66 (263)
448 1ry6_A Internal kinesin; kines 42.1 7.5 0.00026 37.9 1.0 32 45-76 59-101 (360)
449 2qi9_C Vitamin B12 import ATP- 41.7 9.3 0.00032 35.1 1.6 20 57-76 23-42 (249)
450 2vhj_A Ntpase P4, P4; non- hyd 41.6 7.8 0.00027 37.1 1.1 20 57-76 120-139 (331)
451 2owm_A Nckin3-434, related to 41.6 8.4 0.00029 38.7 1.3 30 47-76 114-153 (443)
452 2ihy_A ABC transporter, ATP-bi 41.6 8.9 0.0003 35.9 1.4 20 57-76 44-63 (279)
453 3pxi_A Negative regulator of g 41.4 7.3 0.00025 42.3 1.0 15 62-76 523-537 (758)
454 1svm_A Large T antigen; AAA+ f 41.3 9 0.00031 37.6 1.5 20 57-76 166-185 (377)
455 2yhs_A FTSY, cell division pro 41.3 13 0.00043 38.0 2.6 18 59-76 292-309 (503)
456 2v3c_C SRP54, signal recogniti 40.9 11 0.00038 37.8 2.1 16 61-76 100-115 (432)
457 1jr3_A DNA polymerase III subu 40.7 8.5 0.00029 37.4 1.2 15 62-76 40-54 (373)
458 1r6b_X CLPA protein; AAA+, N-t 40.6 8.5 0.00029 41.8 1.3 17 60-76 207-223 (758)
459 1vht_A Dephospho-COA kinase; s 40.5 8 0.00027 34.4 0.9 16 61-76 5-20 (218)
460 1sxj_B Activator 1 37 kDa subu 39.9 8.9 0.00031 36.2 1.2 15 62-76 44-58 (323)
461 1ltq_A Polynucleotide kinase; 39.1 8.9 0.0003 36.1 1.0 22 415-436 193-214 (301)
462 2f1r_A Molybdopterin-guanine d 39.0 5.3 0.00018 34.4 -0.5 15 62-76 4-18 (171)
463 1rz3_A Hypothetical protein rb 38.9 8.8 0.0003 33.7 0.9 17 60-76 22-38 (201)
464 2h17_A ADP-ribosylation factor 38.7 9 0.00031 32.7 0.9 27 50-76 11-37 (181)
465 2grj_A Dephospho-COA kinase; T 38.5 9.4 0.00032 33.5 1.0 15 62-76 14-28 (192)
466 1pui_A ENGB, probable GTP-bind 38.5 10 0.00034 33.2 1.2 19 58-76 24-42 (210)
467 3vkg_A Dynein heavy chain, cyt 38.5 8.8 0.0003 48.2 1.1 20 57-76 1301-1320(3245)
468 1odf_A YGR205W, hypothetical 3 38.3 9.3 0.00032 36.0 1.0 15 62-76 33-47 (290)
469 4akg_A Glutathione S-transfera 38.2 8.7 0.0003 47.6 1.0 36 40-76 900-939 (2695)
470 1gtv_A TMK, thymidylate kinase 38.2 5.8 0.0002 35.1 -0.4 14 63-76 3-16 (214)
471 1r6b_X CLPA protein; AAA+, N-t 38.2 8.9 0.0003 41.6 1.0 15 62-76 490-504 (758)
472 3qks_A DNA double-strand break 38.0 11 0.00036 33.4 1.3 16 61-76 24-39 (203)
473 1t6n_A Probable ATP-dependent 37.8 24 0.00084 31.0 3.8 51 243-293 136-187 (220)
474 1j8m_F SRP54, signal recogniti 37.7 19 0.00065 34.0 3.1 17 60-76 98-114 (297)
475 2bbs_A Cystic fibrosis transme 37.3 12 0.0004 35.3 1.6 19 58-76 62-80 (290)
476 4eaq_A DTMP kinase, thymidylat 36.2 10 0.00036 34.2 1.0 19 58-76 24-42 (229)
477 2dyk_A GTP-binding protein; GT 36.0 12 0.0004 30.9 1.2 15 62-76 3-17 (161)
478 1uj2_A Uridine-cytidine kinase 35.9 11 0.00037 34.5 1.0 15 62-76 24-38 (252)
479 2jeo_A Uridine-cytidine kinase 35.8 11 0.00036 34.4 1.0 18 59-76 24-41 (245)
480 3qkt_A DNA double-strand break 35.8 12 0.0004 36.2 1.3 16 61-76 24-39 (339)
481 1np6_A Molybdopterin-guanine d 35.7 12 0.00042 32.1 1.3 15 62-76 8-22 (174)
482 2fna_A Conserved hypothetical 35.6 16 0.00055 34.9 2.3 26 50-76 21-46 (357)
483 2h57_A ADP-ribosylation factor 35.3 13 0.00043 32.0 1.3 16 61-76 22-37 (190)
484 3cmu_A Protein RECA, recombina 35.3 21 0.00071 42.9 3.5 21 56-76 1077-1097(2050)
485 2f6r_A COA synthase, bifunctio 35.2 11 0.00038 35.2 1.0 15 62-76 77-91 (281)
486 2ce2_X GTPase HRAS; signaling 35.2 12 0.00042 30.8 1.2 15 62-76 5-19 (166)
487 3r20_A Cytidylate kinase; stru 35.1 11 0.00039 34.1 1.0 16 61-76 10-25 (233)
488 3fvq_A Fe(3+) IONS import ATP- 35.1 13 0.00044 36.3 1.4 20 57-76 27-46 (359)
489 2z83_A Helicase/nucleoside tri 35.0 39 0.0013 34.0 5.1 54 131-189 190-244 (459)
490 1z2a_A RAS-related protein RAB 34.9 13 0.00043 30.9 1.2 15 62-76 7-21 (168)
491 4ddu_A Reverse gyrase; topoiso 34.8 23 0.00079 40.2 3.7 77 373-450 119-202 (1104)
492 1tf7_A KAIC; homohexamer, hexa 34.4 24 0.00081 36.3 3.5 40 57-139 278-317 (525)
493 3o8b_A HCV NS3 protease/helica 34.4 50 0.0017 35.0 5.9 66 131-210 396-461 (666)
494 1qvr_A CLPB protein; coiled co 34.2 9.7 0.00033 42.0 0.5 15 62-76 590-604 (854)
495 1q3t_A Cytidylate kinase; nucl 34.2 13 0.00045 33.5 1.3 18 59-76 15-32 (236)
496 1z47_A CYSA, putative ABC-tran 34.2 14 0.00046 36.0 1.4 20 57-76 38-57 (355)
497 2pjz_A Hypothetical protein ST 34.1 14 0.00047 34.2 1.4 19 57-76 28-46 (263)
498 1z0j_A RAB-22, RAS-related pro 34.1 13 0.00045 30.8 1.2 15 62-76 8-22 (170)
499 2qen_A Walker-type ATPase; unk 33.9 13 0.00045 35.4 1.4 18 59-76 30-47 (350)
500 3tqf_A HPR(Ser) kinase; transf 33.7 13 0.00044 32.1 1.1 18 59-76 15-32 (181)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-52 Score=434.82 Aligned_cols=379 Identities=36% Similarity=0.527 Sum_probs=303.5
Q ss_pred ecccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCC
Q psy10680 14 ARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRS 93 (537)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~ 93 (537)
...+..+-..|+.+.+++.+.++|. ..||..||++|.++|+.+++|++++++||||||||++
T Consensus 48 ~~~~p~~~~~f~~~~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a----------------- 109 (434)
T 2db3_A 48 GSDVPQPIQHFTSADLRDIIIDNVN-KSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAA----------------- 109 (434)
T ss_dssp SSSCCCCCCCGGGSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH-----------------
T ss_pred CCCCCCCcCChhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHH-----------------
Confidence 3333345667899999999999995 6999999999999999999999999999999999999
Q ss_pred CCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhH
Q psy10680 94 NTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMY 173 (537)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
|++|++..+..........++++||++||++|+.|+++.++.+....++++..++|+.....
T Consensus 110 ------------------~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 171 (434)
T 2db3_A 110 ------------------FLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRH 171 (434)
T ss_dssp ------------------HHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHH
T ss_pred ------------------HHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHH
Confidence 88888888876654334457889999999999999999999998888899999999999888
Q ss_pred hHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhcc---ccccccCCceeecC-c
Q psy10680 174 QTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR---TRDLCRGAEIVVAT-P 249 (537)
Q Consensus 174 ~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~---~~~~~~~~~~~saT-p 249 (537)
+...+..+++|+|+||++|.+++.+....+.++++||+||||++.+++|...+..++..+. .++.. ++||| |
T Consensus 172 ~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l----~~SAT~~ 247 (434)
T 2db3_A 172 QNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTL----MFSATFP 247 (434)
T ss_dssp HHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEE----EEESCCC
T ss_pred HHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEE----EEeccCC
Confidence 8888888999999999999999998888899999999999999999999999999988753 24444 99999 5
Q ss_pred hhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCccccee---ehhhhHHHHHHHHhhccccccc
Q psy10680 250 GRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSL---FISERRDTILHFLESGTTNVNR 326 (537)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 326 (537)
..+........... . ......... ......... ....+...+...+
T Consensus 248 ~~~~~~~~~~l~~~--~-~i~~~~~~~-------------------~~~~i~~~~~~~~~~~k~~~l~~~l--------- 296 (434)
T 2db3_A 248 EEIQRMAGEFLKNY--V-FVAIGIVGG-------------------ACSDVKQTIYEVNKYAKRSKLIEIL--------- 296 (434)
T ss_dssp HHHHHHHHTTCSSC--E-EEEESSTTC-------------------CCTTEEEEEEECCGGGHHHHHHHHH---------
T ss_pred HHHHHHHHHhccCC--E-EEEeccccc-------------------cccccceEEEEeCcHHHHHHHHHHH---------
Confidence 55544443311110 0 000000000 000000000 0000111111111
Q ss_pred eeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccc
Q psy10680 327 ITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGI 406 (537)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~ 406 (537)
.....+.+|||.+...+..+ ...|...++.+..+
T Consensus 297 ---------------------------------------------~~~~~~~lVF~~t~~~a~~l-~~~L~~~~~~~~~l 330 (434)
T 2db3_A 297 ---------------------------------------------SEQADGTIVFVETKRGADFL-ASFLSEKEFPTTSI 330 (434)
T ss_dssp ---------------------------------------------HHCCTTEEEECSSHHHHHHH-HHHHHHTTCCEEEE
T ss_pred ---------------------------------------------HhCCCCEEEEEeCcHHHHHH-HHHHHhCCCCEEEE
Confidence 11122356999999999998 88888889999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecC-CCc
Q psy10680 407 HGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTP-LNG 485 (537)
Q Consensus 407 ~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~-~~~ 485 (537)
||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|+++ .+.
T Consensus 331 hg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~ 410 (434)
T 2db3_A 331 HGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDR 410 (434)
T ss_dssp STTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCG
T ss_pred eCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999995 577
Q ss_pred chHHHHHHHHHHccccccHHHHHH
Q psy10680 486 NKAQDLIDILNEAHQFVPDRLLLL 509 (537)
Q Consensus 486 ~~~~~~~~~l~~~~~~~~~~l~~~ 509 (537)
....++.+.+.+..+.+|++|.++
T Consensus 411 ~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 411 AIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp GGHHHHHHHHHHTTCCCCGGGC--
T ss_pred HHHHHHHHHHHHcCCCCCHHHHhC
Confidence 889999999999999999998653
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.1e-49 Score=408.93 Aligned_cols=385 Identities=37% Similarity=0.538 Sum_probs=299.7
Q ss_pred eecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccc
Q psy10680 19 FRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98 (537)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 98 (537)
.+..+|..+.+++.+.+.|. ..||..|+++|.++++.+++|+++++++|||+|||++
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~---------------------- 68 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIE-LTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAA---------------------- 68 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH----------------------
T ss_pred cccCCHhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHH----------------------
Confidence 34567999999999999994 6899999999999999999999999999999999999
Q ss_pred ccccccCccccccchhhHhHhhhcCCCC-------------CCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEE
Q psy10680 99 ESSWWNNNVVDVKYILPALYHILKMPKL-------------EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACL 165 (537)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~-------------~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 165 (537)
|++|++..+...... ....++++||++||++|+.|+++.++.+....++++..+
T Consensus 69 -------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 135 (417)
T 2i4i_A 69 -------------FLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV 135 (417)
T ss_dssp -------------HHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEE
T ss_pred -------------HHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEE
Confidence 667776665533210 112347799999999999999999999888888999999
Q ss_pred EcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhcccc-ccccCCce
Q psy10680 166 YGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTR-DLCRGAEI 244 (537)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~-~~~~~~~~ 244 (537)
+|+.....+...+..+++|+|+||++|...+......+.++++||+||||++.++++...+..++...... ....+..+
T Consensus 136 ~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 215 (417)
T 2i4i_A 136 YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMM 215 (417)
T ss_dssp CSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEE
T ss_pred ECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEE
Confidence 99998888877887889999999999999998888888999999999999999999999999988753221 11223348
Q ss_pred eecCc-hhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceee---hhhhHHHHHHHHhhc
Q psy10680 245 VVATP-GRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLF---ISERRDTILHFLESG 320 (537)
Q Consensus 245 ~saTp-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 320 (537)
+|||+ ......+....... . ........ ........... ...+...+
T Consensus 216 ~SAT~~~~~~~~~~~~~~~~--~-~~~~~~~~-------------------~~~~~i~~~~~~~~~~~~~~~l------- 266 (417)
T 2i4i_A 216 FSATFPKEIQMLARDFLDEY--I-FLAVGRVG-------------------STSENITQKVVWVEESDKRSFL------- 266 (417)
T ss_dssp EESCCCHHHHHHHHHHCSSC--E-EEEEC-----------------------CCSSEEEEEEECCGGGHHHHH-------
T ss_pred EEEeCCHHHHHHHHHHcCCC--E-EEEeCCCC-------------------CCccCceEEEEEeccHhHHHHH-------
Confidence 99994 33333322211000 0 00000000 00000000000 00000000
Q ss_pred cccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccc
Q psy10680 321 TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSL 400 (537)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~ 400 (537)
...+.....+.+.+|||.+...++.+ ...+...+
T Consensus 267 ---------------------------------------------~~~l~~~~~~~~~lVf~~~~~~~~~l-~~~L~~~~ 300 (417)
T 2i4i_A 267 ---------------------------------------------LDLLNATGKDSLTLVFVETKKGADSL-EDFLYHEG 300 (417)
T ss_dssp ---------------------------------------------HHHHHTCCTTCEEEEECSSHHHHHHH-HHHHHHTT
T ss_pred ---------------------------------------------HHHHHhcCCCCeEEEEECCHHHHHHH-HHHHHHCC
Confidence 11111112345567999999999998 88888889
Q ss_pred cccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEe
Q psy10680 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLF 480 (537)
Q Consensus 401 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~ 480 (537)
+.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+.|.+++++
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 380 (417)
T 2i4i_A 301 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 380 (417)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEE
T ss_pred CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcchHHHHHHHHHHccccccHHHHHHHhcCC
Q psy10680 481 TPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNK 514 (537)
Q Consensus 481 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 514 (537)
++.+.....++.+.+....+.+|++|.+++...+
T Consensus 381 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 414 (417)
T 2i4i_A 381 NERNINITKDLLDLLVEAKQEVPSWLENMAYEHH 414 (417)
T ss_dssp CGGGGGGHHHHHHHHHHTTCCCCHHHHHHHTCSC
T ss_pred ccccHHHHHHHHHHHHHhcCcCCHHHHHHHHhhh
Confidence 9999999999999999999999999999987665
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.9e-46 Score=387.20 Aligned_cols=367 Identities=27% Similarity=0.431 Sum_probs=286.8
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
....|..+.+++.+.++|. .+||..|+++|.++++.+++|+++++++|||+|||++
T Consensus 35 ~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~----------------------- 90 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIY-AYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTAT----------------------- 90 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH-----------------------
T ss_pred CCCCHhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHH-----------------------
Confidence 3456888999999999995 6999999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|++|++..+... ..++++||++||++|+.|+.+.++.+....++.+..++|+.....+...+.
T Consensus 91 ------------~~~~~~~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 153 (410)
T 2j0s_A 91 ------------FSISVLQCLDIQ-----VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 153 (410)
T ss_dssp ------------HHHHHHHTCCTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH
T ss_pred ------------HHHHHHHHHhhc-----cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh
Confidence 777777766422 125679999999999999999999998888899999999998887777777
Q ss_pred cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecCc-hhHHHHhh
Q psy10680 180 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVATP-GRLIDFLE 257 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saTp-~~~~~~l~ 257 (537)
.+++|+|+||+.+...+......+.++++||+||||++.+.++...+..++..++. .+.. ++|||+ ......+.
T Consensus 154 ~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i----~~SAT~~~~~~~~~~ 229 (410)
T 2j0s_A 154 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVV----LISATLPHEILEMTN 229 (410)
T ss_dssp HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEE----EEESCCCHHHHTTGG
T ss_pred cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEE----EEEcCCCHHHHHHHH
Confidence 78999999999999999888888899999999999999999999999998887754 4444 899994 43333332
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
...... .... .... .. ..... .. .+......
T Consensus 230 ~~~~~~--~~~~-~~~~-~~------------------~~~~~------------------------~~-~~~~~~~~-- 260 (410)
T 2j0s_A 230 KFMTDP--IRIL-VKRD-EL------------------TLEGI------------------------KQ-FFVAVERE-- 260 (410)
T ss_dssp GTCSSC--EEEC-CCGG-GC------------------SCTTE------------------------EE-EEEEESST--
T ss_pred HHcCCC--EEEE-ecCc-cc------------------cCCCc------------------------eE-EEEEeCcH--
Confidence 211100 0000 0000 00 00000 00 00000000
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQ 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~ 417 (537)
.... ..+..........+.+|||.+...++.+ ...+...++.+..+||+++..+|..
T Consensus 261 ------~~k~----------------~~l~~~~~~~~~~~~lVf~~~~~~~~~l-~~~L~~~~~~~~~~h~~~~~~~r~~ 317 (410)
T 2j0s_A 261 ------EWKF----------------DTLCDLYDTLTITQAVIFCNTKRKVDWL-TEKMREANFTVSSMHGDMPQKERES 317 (410)
T ss_dssp ------THHH----------------HHHHHHHHHHTSSEEEEECSSHHHHHHH-HHHHHHTTCCCEEECTTSCHHHHHH
T ss_pred ------HhHH----------------HHHHHHHHhcCCCcEEEEEcCHHHHHHH-HHHHHhCCCceEEeeCCCCHHHHHH
Confidence 0000 0011111112334667999999999988 8888888999999999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 418 TLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 418 ~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
+++.|++|+.+|||||+++++|+|+|++++||++|.|.+...|+||+||+||.|+.|.+++++.+.+...+..+.+.++.
T Consensus 318 ~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 397 (410)
T 2j0s_A 318 IMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 397 (410)
T ss_dssp HHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred HHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888888776
Q ss_pred cccccc
Q psy10680 498 AHQFVP 503 (537)
Q Consensus 498 ~~~~~~ 503 (537)
.-..+|
T Consensus 398 ~~~~~~ 403 (410)
T 2j0s_A 398 QIDEMP 403 (410)
T ss_dssp CCEECC
T ss_pred Cceecc
Confidence 554444
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6.4e-46 Score=382.02 Aligned_cols=368 Identities=24% Similarity=0.415 Sum_probs=285.1
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
....|+.+.+++.+.++|. ..||..|+++|.++++.+++++++++++|||+|||++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~----------------------- 74 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIF-EAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAA----------------------- 74 (400)
T ss_dssp --CCGGGGCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHH-----------------------
T ss_pred ccCChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHH-----------------------
Confidence 4567899999999999995 5899999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|++|++..+.... .++++||++|+++|+.|+.+.++.+....++++..++|+.....+...+.
T Consensus 75 ------------~~~~~~~~~~~~~-----~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 137 (400)
T 1s2m_A 75 ------------FVIPTLEKVKPKL-----NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLN 137 (400)
T ss_dssp ------------HHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTT
T ss_pred ------------HHHHHHHHHhhcc-----CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhc
Confidence 7888887764321 25679999999999999999999998888899999999988777767777
Q ss_pred cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHhh
Q psy10680 180 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFLE 257 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l~ 257 (537)
.+++|+|+||+.+.+.+......+.++++||+||||++.+..+...+..++..++. .+.. ++||| |.....++.
T Consensus 138 ~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i----~lSAT~~~~~~~~~~ 213 (400)
T 1s2m_A 138 ETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSL----LFSATFPLTVKEFMV 213 (400)
T ss_dssp SCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEE----EEESCCCHHHHHHHH
T ss_pred CCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEE----EEEecCCHHHHHHHH
Confidence 78999999999999998887788899999999999999887777777777776653 3344 89999 544444443
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
...... ........ . ...... ..+.......
T Consensus 214 ~~~~~~--~~~~~~~~---~------------------~~~~~~-------------------------~~~~~~~~~~- 244 (400)
T 1s2m_A 214 KHLHKP--YEINLMEE---L------------------TLKGIT-------------------------QYYAFVEERQ- 244 (400)
T ss_dssp HHCSSC--EEESCCSS---C------------------BCTTEE-------------------------EEEEECCGGG-
T ss_pred HHcCCC--eEEEeccc---c------------------ccCCce-------------------------eEEEEechhh-
Confidence 311100 00000000 0 000000 0000000000
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQ 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~ 417 (537)
. ...+..+.....+.+.+|||.+...+..+ ...+...++.+..+||+++..+|..
T Consensus 245 --------k----------------~~~l~~~~~~~~~~~~lVf~~~~~~~~~l-~~~L~~~~~~~~~~~~~~~~~~r~~ 299 (400)
T 1s2m_A 245 --------K----------------LHCLNTLFSKLQINQAIIFCNSTNRVELL-AKKITDLGYSCYYSHARMKQQERNK 299 (400)
T ss_dssp --------H----------------HHHHHHHHHHSCCSEEEEECSSHHHHHHH-HHHHHHHTCCEEEECTTSCHHHHHH
T ss_pred --------H----------------HHHHHHHHhhcCCCcEEEEEecHHHHHHH-HHHHHhcCCCeEEecCCCCHHHHHH
Confidence 0 00011111112345677999999999888 8888888999999999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 418 TLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 418 ~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
+++.|++|+.+|||||+++++|+|+|++++||++|.|.++..|+||+||+||.|+.|.+++++++.+...+.++.+.+..
T Consensus 300 ~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 379 (400)
T 1s2m_A 300 VFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGT 379 (400)
T ss_dssp HHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888887776
Q ss_pred ccccccHHH
Q psy10680 498 AHQFVPDRL 506 (537)
Q Consensus 498 ~~~~~~~~l 506 (537)
.-+.+|..+
T Consensus 380 ~~~~~~~~~ 388 (400)
T 1s2m_A 380 EIAAIPATI 388 (400)
T ss_dssp CCEECCSSC
T ss_pred Ccccccccc
Confidence 555555543
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.2e-46 Score=385.06 Aligned_cols=367 Identities=30% Similarity=0.451 Sum_probs=273.8
Q ss_pred CCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccc
Q psy10680 22 GYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESS 101 (537)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (537)
..|..+.+++.+.+.|. .+|+..|+++|.++++.+++|+++++++|||+|||++
T Consensus 40 ~~f~~~~l~~~~~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~------------------------- 93 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIY-AYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT------------------------- 93 (414)
T ss_dssp CCGGGGCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHH-------------------------
T ss_pred cCHhhCCCCHHHHHHHH-HcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHH-------------------------
Confidence 46778889999999995 5899999999999999999999999999999999999
Q ss_pred cccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc-c
Q psy10680 102 WWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC-R 180 (537)
Q Consensus 102 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ 180 (537)
|+++++..+.... .++++||++|+++|+.|+.+.++.+....+..+..+.|+.........+. .
T Consensus 94 ----------~~~~~~~~~~~~~-----~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (414)
T 3eiq_A 94 ----------FAISILQQIELDL-----KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME 158 (414)
T ss_dssp ----------HHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTT
T ss_pred ----------HHHHHHHHHhhcC-----CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcC
Confidence 7888887765432 25679999999999999999999998888889999999888777666655 6
Q ss_pred CCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecCc-hhHHHHhhh
Q psy10680 181 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVATP-GRLIDFLES 258 (537)
Q Consensus 181 ~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saTp-~~~~~~l~~ 258 (537)
+++|+|+||+++...+......+.++++||+||||++.++++...+..++..++. .+.+ ++|||+ ......+..
T Consensus 159 ~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i----~~SAT~~~~~~~~~~~ 234 (414)
T 3eiq_A 159 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV----LLSATMPSDVLEVTKK 234 (414)
T ss_dssp CCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEE----EECSCCCHHHHHHHTT
T ss_pred CCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEE----EEEEecCHHHHHHHHH
Confidence 7899999999999999888888899999999999999999999999999887754 4444 899994 444444333
Q ss_pred CCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceee----hhhhHHHHHHHHhhccccccceeeeecch
Q psy10680 259 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLF----ISERRDTILHFLESGTTNVNRITYLVLDE 334 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (537)
..... .... ..... .. ......... ...+...+.
T Consensus 235 ~~~~~--~~~~-~~~~~-~~------------------~~~~~~~~~~~~~~~~~~~~l~-------------------- 272 (414)
T 3eiq_A 235 FMRDP--IRIL-VKKEE-LT------------------LEGIRQFYINVEREEWKLDTLC-------------------- 272 (414)
T ss_dssp TCSSC--EEEC-CCCCC-CC------------------TTSCCEEEEECSSSTTHHHHHH--------------------
T ss_pred HcCCC--EEEE-ecCCc-cC------------------CCCceEEEEEeChHHhHHHHHH--------------------
Confidence 11110 0000 00000 00 000000000 000011111
Q ss_pred hhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHH
Q psy10680 335 ADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414 (537)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 414 (537)
.........+.+|||.+...+..+ ...+...++.+..+||+++..+
T Consensus 273 ---------------------------------~~~~~~~~~~~lvf~~~~~~~~~l-~~~l~~~~~~~~~~h~~~~~~~ 318 (414)
T 3eiq_A 273 ---------------------------------DLYETLTITQAVIFINTRRKVDWL-TEKMHARDFTVSAMHGDMDQKE 318 (414)
T ss_dssp ---------------------------------HHHHSSCCSSCEEECSCHHHHHHH-HHHHHTTTCCCEEC---CHHHH
T ss_pred ---------------------------------HHHHhCCCCcEEEEeCCHHHHHHH-HHHHHhcCCeEEEecCCCCHHH
Confidence 111111234556999999999998 8888888999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHH
Q psy10680 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDI 494 (537)
Q Consensus 415 r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~ 494 (537)
|..+++.|++|+.+|||||+++++|+|+|++++||++|.|.+...|+||+||+||.|+.|.+++++.+.+...+..+.+.
T Consensus 319 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~ 398 (414)
T 3eiq_A 319 RDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETF 398 (414)
T ss_dssp HHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccccccHHHHHH
Q psy10680 495 LNEAHQFVPDRLLLL 509 (537)
Q Consensus 495 l~~~~~~~~~~l~~~ 509 (537)
++..-..+|..+.++
T Consensus 399 ~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 399 YNTSIEEMPLNVADL 413 (414)
T ss_dssp TTCCCEECCC-----
T ss_pred HcCCccccChhhhhc
Confidence 998888888777643
No 6
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.4e-44 Score=387.19 Aligned_cols=376 Identities=26% Similarity=0.355 Sum_probs=274.2
Q ss_pred ecCCcceee----ehhhhhhcccccCCCCCCChhhhhhhhccc--cCCcEEEEccCCCccccccccccchhccccccCCC
Q psy10680 20 RSGYINVLI----ASDVASRGLGKNSGYGKPTSIQAQSWPICL--SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRS 93 (537)
Q Consensus 20 ~~~~~~~~~----~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~--~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~ 93 (537)
....|..+. +++.+.++| +.+||..|+++|.++++.++ .+++++++||||+|||++
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l-~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~----------------- 76 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFA----------------- 76 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHH-HTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHH-----------------
T ss_pred CCcCHHHHhhcCCCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHH-----------------
Confidence 344555554 899999999 46999999999999999999 678999999999999999
Q ss_pred CCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhccc----ceeeEEEEEcCc
Q psy10680 94 NTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT----MRIRHACLYGGT 169 (537)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~ 169 (537)
|++|++..+..... ....++++|||+||++|+.|+.+.++.+... ..+.+..+.|+.
T Consensus 77 ------------------~~lpil~~l~~~~~-~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~ 137 (579)
T 3sqw_A 77 ------------------FLIPIFQHLINTKF-DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 137 (579)
T ss_dssp ------------------HHHHHHHHHHHTTT-SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTS
T ss_pred ------------------HHHHHHHHHHhccc-cccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCc
Confidence 88888887765432 2233668999999999999999999987532 246678888888
Q ss_pred chhHhHHHhc-cCCcEEEeCCchhHHHHhcC-cccccceeEEEecchhhhhhCCChHHHHHHHhhcccccc----ccCCc
Q psy10680 170 SKMYQTRDLC-RGAEIVVATPGRLIDFLESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDL----CRGAE 243 (537)
Q Consensus 170 ~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~-~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~----~~~~~ 243 (537)
....+...+. .+++|+|+||++|...+... ...+..+++||+||||++.+++|...+..++..++.... ..+..
T Consensus 138 ~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l 217 (579)
T 3sqw_A 138 DFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTL 217 (579)
T ss_dssp CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEE
T ss_pred cHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEE
Confidence 8777766654 47999999999999888654 446788999999999999999999999999887764211 22344
Q ss_pred eeecC-chhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhh-hHHHHHHHHhhcc
Q psy10680 244 IVVAT-PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISE-RRDTILHFLESGT 321 (537)
Q Consensus 244 ~~saT-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 321 (537)
++||| +..+...+........ . .......... ............... ........
T Consensus 218 ~~SAT~~~~v~~~~~~~l~~~~-~--~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~----- 274 (579)
T 3sqw_A 218 LFSATLDDKVQKLANNIMNKKE-C--LFLDTVDKNE---------------PEAHERIDQSVVISEKFANSIFAA----- 274 (579)
T ss_dssp EEESSCCTHHHHHTTTTCCSSE-E--EEEESSCSSS---------------CSSCTTEEEEEEEESSTTHHHHHH-----
T ss_pred EEeccCChHHHHHHHHHcCCCc-e--EEEeecCccc---------------cccccccceEEEEecchhhhHHHH-----
Confidence 89999 4444443332111100 0 0000000000 000000000000000 00000000
Q ss_pred ccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccc--
Q psy10680 322 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSS-- 399 (537)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~-- 399 (537)
...+.........+.+.+|||.+...++.+ +..+...
T Consensus 275 ----------------------------------------~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l-~~~L~~~~~ 313 (579)
T 3sqw_A 275 ----------------------------------------VEHIKKQIKERDSNYKAIIFAPTVKFTSFL-CSILKNEFK 313 (579)
T ss_dssp ----------------------------------------HHHHHHHHHHTTTCCEEEEECSSHHHHHHH-HHHHHHHHT
T ss_pred ----------------------------------------HHHHHHHHhhcCCCCcEEEECCcHHHHHHH-HHHHHHhhc
Confidence 000111111123455777999999999888 7777665
Q ss_pred -ccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEE
Q psy10680 400 -LYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYT 478 (537)
Q Consensus 400 -~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~ 478 (537)
++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++|.|.++..|+||+||+||.|+.|.+++
T Consensus 314 ~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~ 393 (579)
T 3sqw_A 314 KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL 393 (579)
T ss_dssp TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE
T ss_pred CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEE
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcchHHHHHHHHH
Q psy10680 479 LFTPLNGNKAQDLIDILN 496 (537)
Q Consensus 479 l~~~~~~~~~~~~~~~l~ 496 (537)
++.+.+...+..+.+...
T Consensus 394 ~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 394 FICKDELPFVRELEDAKN 411 (579)
T ss_dssp EEEGGGHHHHHHHHHHHC
T ss_pred EEcccHHHHHHHHHHHhC
Confidence 999988887777776553
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.6e-44 Score=365.20 Aligned_cols=353 Identities=32% Similarity=0.498 Sum_probs=275.7
Q ss_pred cCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccC-CcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 21 SGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSG-RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~-~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
...|..+.+++.+.+.|. ..||..|+++|.++++.++++ +++++.+|||+|||++
T Consensus 5 ~~~f~~~~l~~~~~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~----------------------- 60 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIR-NKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTAS----------------------- 60 (367)
T ss_dssp CCCGGGSSCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHH-----------------------
T ss_pred cCchhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHH-----------------------
Confidence 356888899999999995 689999999999999999988 6999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|+++++..+... .++++||++|+++|+.|+.+.++.+....++.+...+|+.........+.
T Consensus 61 ------------~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 122 (367)
T 1hv8_A 61 ------------FAIPLIELVNEN------NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK 122 (367)
T ss_dssp ------------HHHHHHHHSCSS------SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH
T ss_pred ------------HHHHHHHHhccc------CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC
Confidence 777777765432 25679999999999999999999988877888999999887666555443
Q ss_pred cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecCchh-HHHHhh
Q psy10680 180 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVATPGR-LIDFLE 257 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saTp~~-~~~~l~ 257 (537)
+++|+|+||+.+.+.+......+.++++||+||||++.++++...+..++...+. .+.. ++||||.. ....+.
T Consensus 123 -~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i----~~SAT~~~~~~~~~~ 197 (367)
T 1hv8_A 123 -NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRIL----LFSATMPREILNLAK 197 (367)
T ss_dssp -TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEE----EECSSCCHHHHHHHH
T ss_pred -CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEE----EEeeccCHHHHHHHH
Confidence 7899999999999999888788899999999999999998888888888877644 3444 88999543 333332
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
..... .......... .............+...+...
T Consensus 198 ~~~~~---~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~~--------------------- 233 (367)
T 1hv8_A 198 KYMGD---YSFIKAKINA--------------------NIEQSYVEVNENERFEALCRL--------------------- 233 (367)
T ss_dssp HHCCS---EEEEECCSSS--------------------SSEEEEEECCGGGHHHHHHHH---------------------
T ss_pred HHcCC---CeEEEecCCC--------------------CceEEEEEeChHHHHHHHHHH---------------------
Confidence 21110 0000000000 000000000000000000000
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQ 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~ 417 (537)
....+.+.+|||.+...+..+ ...+...++.+..+||+++..+|..
T Consensus 234 ---------------------------------l~~~~~~~lvf~~~~~~~~~l-~~~L~~~~~~~~~~~~~~~~~~r~~ 279 (367)
T 1hv8_A 234 ---------------------------------LKNKEFYGLVFCKTKRDTKEL-ASMLRDIGFKAGAIHGDLSQSQREK 279 (367)
T ss_dssp ---------------------------------HCSTTCCEEEECSSHHHHHHH-HHHHHHTTCCEEEECSSSCHHHHHH
T ss_pred ---------------------------------HhcCCCcEEEEECCHHHHHHH-HHHHHhcCCCeEEeeCCCCHHHHHH
Confidence 012334556999999999988 8888888999999999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 418 TLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 418 ~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
+++.|++|+.+|||||+++++|+|+|++++||+++.|.++.+|+||+||+||.|+.|.+++++++.+...+..+.+.++.
T Consensus 280 ~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 280 VIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp HHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888877765
Q ss_pred c
Q psy10680 498 A 498 (537)
Q Consensus 498 ~ 498 (537)
.
T Consensus 360 ~ 360 (367)
T 1hv8_A 360 K 360 (367)
T ss_dssp C
T ss_pred C
Confidence 3
No 8
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=3.4e-44 Score=385.49 Aligned_cols=367 Identities=26% Similarity=0.354 Sum_probs=268.5
Q ss_pred ehhhhhhcccccCCCCCCChhhhhhhhccc--cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCc
Q psy10680 29 ASDVASRGLGKNSGYGKPTSIQAQSWPICL--SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNN 106 (537)
Q Consensus 29 ~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~--~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (537)
+++.+.+.| +.+||..|+++|.++++.++ .+++++++||||+|||++
T Consensus 79 l~~~l~~~l-~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~------------------------------ 127 (563)
T 3i5x_A 79 LDKEIHKAI-TRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFA------------------------------ 127 (563)
T ss_dssp SCHHHHHHH-HTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHH------------------------------
T ss_pred CCHHHHHHH-HHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHH------------------------------
Confidence 888888888 46899999999999999998 678999999999999999
Q ss_pred cccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhccc----ceeeEEEEEcCcchhHhHHHh-ccC
Q psy10680 107 VVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT----MRIRHACLYGGTSKMYQTRDL-CRG 181 (537)
Q Consensus 107 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l-~~~ 181 (537)
|++|++..+..... ....++++|||+||++|+.|+.+.++.+... ....+..++|+.....+...+ ..+
T Consensus 128 -----~~lpil~~l~~~~~-~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 201 (563)
T 3i5x_A 128 -----FLIPIFQHLINTKF-DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 201 (563)
T ss_dssp -----HHHHHHHHHHHTTT-SSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHhccc-cccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCC
Confidence 88888888766432 1233568999999999999999999986432 245678888888877666665 448
Q ss_pred CcEEEeCCchhHHHHhcC-cccccceeEEEecchhhhhhCCChHHHHHHHhhcccccc----ccCCceeecC-chhHHHH
Q psy10680 182 AEIVVATPGRLIDFLESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDL----CRGAEIVVAT-PGRLIDF 255 (537)
Q Consensus 182 ~~Ivv~Tp~~l~~~l~~~-~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~----~~~~~~~saT-p~~~~~~ 255 (537)
++|+|+||+++...+.+. ...+.++++||+||||++.+++|...+..++..++.... ..+..++||| +..+...
T Consensus 202 ~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~ 281 (563)
T 3i5x_A 202 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKL 281 (563)
T ss_dssp CSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHH
T ss_pred CCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHH
Confidence 999999999999888654 346788999999999999999999999999877654211 2234489999 4444443
Q ss_pred hhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehh-hhHHHHHHHHhhccccccceeeeecch
Q psy10680 256 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFIS-ERRDTILHFLESGTTNVNRITYLVLDE 334 (537)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (537)
+.. ........ ......... .............. .........
T Consensus 282 ~~~-~~~~~~~~--~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~------------------ 325 (563)
T 3i5x_A 282 ANN-IMNKKECL--FLDTVDKNE---------------PEAHERIDQSVVISEKFANSIFAA------------------ 325 (563)
T ss_dssp TTT-TCCSSEEE--EEESSCSSS---------------CSSCTTEEEEEEEESSTTHHHHHH------------------
T ss_pred HHH-hcCCCceE--EEeccCCCC---------------ccccccCceEEEECchhHhhHHHH------------------
Confidence 332 11111000 000000000 00000000000000 000000000
Q ss_pred hhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccc---ccccccccCCCC
Q psy10680 335 ADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSS---LYRAMGIHGDKS 411 (537)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~---~~~~~~~~~~~~ 411 (537)
.............+.+.+|||.+...++.+ +..+... ++.+..+||+|+
T Consensus 326 ---------------------------~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l-~~~L~~~~~~~~~v~~~h~~~~ 377 (563)
T 3i5x_A 326 ---------------------------VEHIKKQIKERDSNYKAIIFAPTVKFTSFL-CSILKNEFKKDLPILEFHGKIT 377 (563)
T ss_dssp ---------------------------HHHHHHHHHHTTTCCEEEEECSCHHHHHHH-HHHHHHHHTTTSCEEEESTTSC
T ss_pred ---------------------------HHHHHHHHhhcCCCCcEEEEcCcHHHHHHH-HHHHHHhccCCceEEEecCCCC
Confidence 000111111223455777999999999888 7777665 788999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHH
Q psy10680 412 QWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDL 491 (537)
Q Consensus 412 ~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~ 491 (537)
..+|..+++.|++|+.+|||||+++++|||+|++++||++|.|.++..|+||+||+||.|+.|.+++++.+.+...+..+
T Consensus 378 ~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l 457 (563)
T 3i5x_A 378 QNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVREL 457 (563)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877777
Q ss_pred HHHHH
Q psy10680 492 IDILN 496 (537)
Q Consensus 492 ~~~l~ 496 (537)
.+...
T Consensus 458 ~~~~~ 462 (563)
T 3i5x_A 458 EDAKN 462 (563)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 76654
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.9e-45 Score=377.57 Aligned_cols=370 Identities=29% Similarity=0.443 Sum_probs=162.8
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
....|+.+.+++.+.+.|. .+||..|+++|.++++.+..|+++++++|||+|||++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~----------------------- 74 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT----------------------- 74 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHH-----------------------
T ss_pred ccCChhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHH-----------------------
Confidence 3456888999999999995 5899999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|++|++..+.... .++++||++|+++|+.|+.+.+..+....++++..++|+.........+.
T Consensus 75 ------------~~~~~~~~l~~~~-----~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 137 (394)
T 1fuu_A 75 ------------FSIAALQRIDTSV-----KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR 137 (394)
T ss_dssp ------------HHHHHHHHCCTTC-----CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH
T ss_pred ------------HHHHHHHHhhccC-----CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC
Confidence 7888887765432 26679999999999999999999998888899999999887665544443
Q ss_pred cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecCch-hHHHHhh
Q psy10680 180 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVATPG-RLIDFLE 257 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saTp~-~~~~~l~ 257 (537)
+++|+|+||+.+...+......+.++++||+||||++.+.++...+..++..++. .+.. ++|||+. .......
T Consensus 138 -~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i----~~SAT~~~~~~~~~~ 212 (394)
T 1fuu_A 138 -DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV----LLSATMPNDVLEVTT 212 (394)
T ss_dssp -HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEE----EECSSCCHHHHHHHH
T ss_pred -CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEE----EEEEecCHHHHHHHH
Confidence 6899999999999999887788899999999999999999999999988877754 3444 8899943 3333332
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
..... +..... .. ..... +.+...... .........
T Consensus 213 ~~~~~--~~~~~~-~~-~~~~~----~~~~~~~~~--------------~~~~~~~~~---------------------- 248 (394)
T 1fuu_A 213 KFMRN--PVRILV-KK-DELTL----EGIKQFYVN--------------VEEEEYKYE---------------------- 248 (394)
T ss_dssp HHCCS--CEEEEE-CC----------------------------------------------------------------
T ss_pred HhcCC--CeEEEe-cC-ccccC----CCceEEEEE--------------cCchhhHHH----------------------
Confidence 21110 011000 00 00000 000000000 000000000
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQ 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~ 417 (537)
.+..........+.+|||.+...+..+ ...+...++.+..+||+++..+|..
T Consensus 249 ---------------------------~l~~~~~~~~~~~~lVf~~~~~~~~~l-~~~L~~~~~~~~~~~~~~~~~~r~~ 300 (394)
T 1fuu_A 249 ---------------------------CLTDLYDSISVTQAVIFCNTRRKVEEL-TTKLRNDKFTVSAIYSDLPQQERDT 300 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------HHHHHHhcCCCCcEEEEECCHHHHHHH-HHHHHHcCCeEEEeeCCCCHHHHHH
Confidence 000000011223455999999999998 8888888999999999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 418 TLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 418 ~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
+++.|++|+.+|||||+++++|+|+|++++||++|.|.++..|+||+||+||.|+.|.+++++.+.+...+..+.+.+..
T Consensus 301 ~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 380 (394)
T 1fuu_A 301 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 380 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888888777
Q ss_pred ccccccHHHH
Q psy10680 498 AHQFVPDRLL 507 (537)
Q Consensus 498 ~~~~~~~~l~ 507 (537)
.-..+|..+.
T Consensus 381 ~~~~~~~~~~ 390 (394)
T 1fuu_A 381 QIEELPSDIA 390 (394)
T ss_dssp ----------
T ss_pred cccccCcchh
Confidence 6656665443
No 10
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.2e-44 Score=368.03 Aligned_cols=369 Identities=23% Similarity=0.380 Sum_probs=271.9
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
....|+.+.+++.+.+.|. .+||..|+++|.++++.+++|+++++++|||+|||++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~----------------------- 61 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIV-DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAV----------------------- 61 (391)
T ss_dssp ---CGGGGCCCHHHHHHHH-HHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHH-----------------------
T ss_pred CCCChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHH-----------------------
Confidence 3456888899999999995 5899999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcchhHhHHHh
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQTRDL 178 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 178 (537)
|++|++..+.... .++++||++|+++|+.|+.+.++.+.... ++++..++|+.........+
T Consensus 62 ------------~~~~~~~~l~~~~-----~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 124 (391)
T 1xti_A 62 ------------FVLATLQQLEPVT-----GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 124 (391)
T ss_dssp ------------HHHHHHHHCCCCT-----TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH
T ss_pred ------------HHHHHHHhhcccC-----CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH
Confidence 7788877664322 25679999999999999999999887665 78899999988776665555
Q ss_pred cc-CCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhC-CChHHHHHHHhhccc-cccccCCceeecCc-hhHHH
Q psy10680 179 CR-GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDM-GFEPQIRKIIQMTRT-RDLCRGAEIVVATP-GRLID 254 (537)
Q Consensus 179 ~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~-~~~~~l~~il~~~~~-~~~~~~~~~~saTp-~~~~~ 254 (537)
.. .++|+|+||+.+...+......+.++++||+||||++.++ ++...+..++...+. .+.. ++|||+ .....
T Consensus 125 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i----~~SAT~~~~~~~ 200 (391)
T 1xti_A 125 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVM----MFSATLSKEIRP 200 (391)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEE----EEESSCCSTHHH
T ss_pred hcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEE----EEEeeCCHHHHH
Confidence 43 4799999999999999888888899999999999999874 456666666665543 3344 899994 33333
Q ss_pred HhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecch
Q psy10680 255 FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDE 334 (537)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (537)
.+....... ... ........ ...... ..+.....
T Consensus 201 ~~~~~~~~~--~~~-~~~~~~~~------------------~~~~~~-------------------------~~~~~~~~ 234 (391)
T 1xti_A 201 VCRKFMQDP--MEI-FVDDETKL------------------TLHGLQ-------------------------QYYVKLKD 234 (391)
T ss_dssp HHHHHCSSC--EEE-ECCCCCCC------------------CCTTCE-------------------------EEEEECCG
T ss_pred HHHHHcCCC--eEE-EecCcccc------------------Ccccce-------------------------EEEEEcCc
Confidence 322211100 000 00000000 000000 00000000
Q ss_pred hhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHH
Q psy10680 335 ADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414 (537)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 414 (537)
. ... ..+........+.+.+|||.+...+..+ ...+...++.+..+||+++..+
T Consensus 235 ~---------~~~----------------~~l~~~l~~~~~~~~lvf~~~~~~~~~l-~~~L~~~~~~~~~~~~~~~~~~ 288 (391)
T 1xti_A 235 N---------EKN----------------RKLFDLLDVLEFNQVVIFVKSVQRCIAL-AQLLVEQNFPAIAIHRGMPQEE 288 (391)
T ss_dssp G---------GHH----------------HHHHHHHHHSCCSEEEEECSCHHHHHHH-HHHHHHTTCCEEEECTTSCHHH
T ss_pred h---------hHH----------------HHHHHHHHhcCCCcEEEEeCcHHHHHHH-HHHHHhCCCcEEEEeCCCCHHH
Confidence 0 000 0000111112345677999999999998 8888888999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC-cchHHHHHH
Q psy10680 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN-GNKAQDLID 493 (537)
Q Consensus 415 r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~-~~~~~~~~~ 493 (537)
|..+++.|++|+.+|||||+++++|+|+|++++||++|.|.+...|+||+||+||.|+.|.+++++.+.+ ...+..+.+
T Consensus 289 r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 368 (391)
T 1xti_A 289 RLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 368 (391)
T ss_dssp HHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998764 344556666
Q ss_pred HHHHccccccHH
Q psy10680 494 ILNEAHQFVPDR 505 (537)
Q Consensus 494 ~l~~~~~~~~~~ 505 (537)
.+...-..+|..
T Consensus 369 ~~~~~~~~~~~~ 380 (391)
T 1xti_A 369 RFEVNISELPDE 380 (391)
T ss_dssp HTTCCCEECCSC
T ss_pred HhcCChhhCCcc
Confidence 555444445543
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.4e-43 Score=365.72 Aligned_cols=368 Identities=24% Similarity=0.373 Sum_probs=271.2
Q ss_pred ccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccC--CcEEEEccCCCccccccccccchhccccccCCC
Q psy10680 16 LPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSG--RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRS 93 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~--~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~ 93 (537)
.|..+...|..+.+++.+.+.|. ..||..|+++|.++++.++++ +++++++|||+|||++
T Consensus 19 ~~~~~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~----------------- 80 (412)
T 3fht_A 19 SPLYSVKSFEELRLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA----------------- 80 (412)
T ss_dssp STTCCSSCTGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHH-----------------
T ss_pred CCccccCCHhhCCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHH-----------------
Confidence 45556778999999999999995 599999999999999999987 8999999999999999
Q ss_pred CCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcchh
Q psy10680 94 NTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKM 172 (537)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~ 172 (537)
|++|++..+.... .++++||++|+++|+.|+.+.++.+.... ++.+....++....
T Consensus 81 ------------------~~~~~~~~~~~~~-----~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (412)
T 3fht_A 81 ------------------FVLAMLSQVEPAN-----KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 137 (412)
T ss_dssp ------------------HHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC
T ss_pred ------------------HHHHHHHHhhhcC-----CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh
Confidence 7888887765432 25679999999999999999999887653 56777777765543
Q ss_pred HhHHHhccCCcEEEeCCchhHHHHhc-CcccccceeEEEecchhhhhh-CCChHHHHHHHhhccc-cccccCCceeecCc
Q psy10680 173 YQTRDLCRGAEIVVATPGRLIDFLES-GTTNVNRITYLVLDEADRMLD-MGFEPQIRKIIQMTRT-RDLCRGAEIVVATP 249 (537)
Q Consensus 173 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~l~liV~DE~h~~~~-~~~~~~l~~il~~~~~-~~~~~~~~~~saTp 249 (537)
.. ....++|+|+||+.+...+.. ....+.++++||+||||++.+ ..+...+..+...++. .+.+ ++|||+
T Consensus 138 ~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i----~~SAT~ 210 (412)
T 3fht_A 138 RG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML----LFSATF 210 (412)
T ss_dssp TT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEE----EEESCC
T ss_pred hh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEE----EEEeec
Confidence 22 134679999999999998855 566789999999999999987 5677777777776654 3444 899994
Q ss_pred -hhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhcccccccee
Q psy10680 250 -GRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRIT 328 (537)
Q Consensus 250 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (537)
.....+......... ......... ...................
T Consensus 211 ~~~~~~~~~~~~~~~~---~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-------------- 254 (412)
T 3fht_A 211 EDSVWKFAQKVVPDPN---VIKLKREEE-------------------TLDTIKQYYVLCSSRDEKF-------------- 254 (412)
T ss_dssp CHHHHHHHHHHSSSCE---EECCCGGGS-------------------SCTTEEEEEEECSSHHHHH--------------
T ss_pred CHHHHHHHHHhcCCCe---EEeeccccc-------------------cccCceEEEEEcCChHHHH--------------
Confidence 433333332111100 000000000 0000000000000000000
Q ss_pred eeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccC
Q psy10680 329 YLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHG 408 (537)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~ 408 (537)
..+........+.+.+|||.+...+..+ ...+...++.+..+||
T Consensus 255 -----------------------------------~~l~~~~~~~~~~~~lvf~~~~~~~~~l-~~~L~~~~~~~~~~~~ 298 (412)
T 3fht_A 255 -----------------------------------QALCNLYGAITIAQAMIFCHTRKTASWL-AAELSKEGHQVALLSG 298 (412)
T ss_dssp -----------------------------------HHHHHHHHHHSSSEEEEECSSHHHHHHH-HHHHHHTTCCCEEECT
T ss_pred -----------------------------------HHHHHHHhhcCCCCEEEEeCCHHHHHHH-HHHHHhCCCeEEEecC
Confidence 0111111222345677999999999999 8888888999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCC------CChhhhHhhhhcccCCCCCceeEEEecC
Q psy10680 409 DKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFP------DNTENYVHRIGRTARSTKTGISYTLFTP 482 (537)
Q Consensus 409 ~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p------~s~~~~~Q~~GRagR~~~~g~~~~l~~~ 482 (537)
+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++|.| .+..+|+||+||+||.|+.|.+++++++
T Consensus 299 ~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 378 (412)
T 3fht_A 299 EMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 378 (412)
T ss_dssp TSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECS
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcC
Confidence 9999999999999999999999999999999999999999999999 4678999999999999999999999987
Q ss_pred CC-cchHHHHHHHHHHcccccc
Q psy10680 483 LN-GNKAQDLIDILNEAHQFVP 503 (537)
Q Consensus 483 ~~-~~~~~~~~~~l~~~~~~~~ 503 (537)
.+ ...+..+.+.++..-..++
T Consensus 379 ~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 379 KHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp HHHHHHHHHHHHHHTCCCEEC-
T ss_pred hhhHHHHHHHHHHHCCccccCC
Confidence 64 6667777777765444443
No 12
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-43 Score=355.32 Aligned_cols=332 Identities=29% Similarity=0.471 Sum_probs=251.9
Q ss_pred hhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCcccc
Q psy10680 30 SDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVD 109 (537)
Q Consensus 30 ~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (537)
++.+.+.| +.+||..|+++|.++++.+.+++++++++|||+|||++
T Consensus 2 ~~~i~~~l-~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~--------------------------------- 47 (337)
T 2z0m_A 2 NEKIEQAI-REMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAA--------------------------------- 47 (337)
T ss_dssp CHHHHHHH-HHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH---------------------------------
T ss_pred CHHHHHHH-HHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHH---------------------------------
Confidence 46677777 46999999999999999999999999999999999999
Q ss_pred ccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCC
Q psy10680 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATP 189 (537)
Q Consensus 110 ~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 189 (537)
|++|++.. +.++||++|+++|+.|+.+.++.+....+.++..++|+.....+...+. .++|+|+||
T Consensus 48 --~~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~ 113 (337)
T 2z0m_A 48 --YAIPILEL-----------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATP 113 (337)
T ss_dssp --HHHHHHHH-----------TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECH
T ss_pred --HHHHHHhh-----------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECH
Confidence 77777653 4559999999999999999999988888889999999887766655543 589999999
Q ss_pred chhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecCc-hhHHHHhhhCCcccccce
Q psy10680 190 GRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVATP-GRLIDFLESGTTNVNRIT 267 (537)
Q Consensus 190 ~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saTp-~~~~~~l~~~~~~~~~~~ 267 (537)
+.+.+.+......+.++++||+||||++.++++...+..++...+. .... ++|||+ ......+.........+
T Consensus 114 ~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~----~~SAT~~~~~~~~~~~~~~~~~~~- 188 (337)
T 2z0m_A 114 GRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITG----LFSATIPEEIRKVVKDFITNYEEI- 188 (337)
T ss_dssp HHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEE----EEESCCCHHHHHHHHHHSCSCEEE-
T ss_pred HHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEE----EEeCcCCHHHHHHHHHhcCCceee-
Confidence 9999998887788899999999999999999998888888877654 2233 679994 33333332211100000
Q ss_pred eeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHH
Q psy10680 268 YLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQI 347 (537)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (537)
... ... ..... .+..... ......
T Consensus 189 ----~~~---------------------------------~~~-----------~~~~~-~~~~~~~-------~~~~~~ 212 (337)
T 2z0m_A 189 ----EAC---------------------------------IGL-----------ANVEH-KFVHVKD-------DWRSKV 212 (337)
T ss_dssp ----ECS---------------------------------GGG-----------GGEEE-EEEECSS-------SSHHHH
T ss_pred ----ecc---------------------------------ccc-----------CCceE-EEEEeCh-------HHHHHH
Confidence 000 000 00000 0000000 000000
Q ss_pred HHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCC
Q psy10680 348 RKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYI 427 (537)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 427 (537)
.......+.+.+|||.+...++.+ ...+. .+..+||+++..+|.++++.|++|+.
T Consensus 213 --------------------~~~~~~~~~~~lvf~~~~~~~~~l-~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~ 267 (337)
T 2z0m_A 213 --------------------QALRENKDKGVIVFVRTRNRVAKL-VRLFD----NAIELRGDLPQSVRNRNIDAFREGEY 267 (337)
T ss_dssp --------------------HHHHTCCCSSEEEECSCHHHHHHH-HTTCT----TEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred --------------------HHHHhCCCCcEEEEEcCHHHHHHH-HHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCC
Confidence 001112345567999999998888 55555 46679999999999999999999999
Q ss_pred cEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHH
Q psy10680 428 NVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILN 496 (537)
Q Consensus 428 ~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~ 496 (537)
+|||||+++++|+|+|++++||++++|.|+..|+||+||+||.|+.|.+++++. .+......+.+.++
T Consensus 268 ~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 268 DMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred cEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999 77777777766554
No 13
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.3e-43 Score=361.85 Aligned_cols=354 Identities=25% Similarity=0.401 Sum_probs=263.3
Q ss_pred cCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccC--CcEEEEccCCCccccccccccchhccccccCCCCCccc
Q psy10680 21 SGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSG--RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~--~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 98 (537)
..+|..+++++.+.+.|. ..|+..|+++|.++++.++++ +++++++|||+|||++
T Consensus 4 ~~~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~---------------------- 60 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIY-AMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAA---------------------- 60 (395)
T ss_dssp CCSSTTSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHH----------------------
T ss_pred ccCHhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHH----------------------
Confidence 357888899999999995 589999999999999999998 8999999999999999
Q ss_pred ccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh
Q psy10680 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL 178 (537)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 178 (537)
|+++++..+.... .++++||++|+++|+.|+.+.++.+....++.+...+++......
T Consensus 61 -------------~~~~~~~~~~~~~-----~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 118 (395)
T 3pey_A 61 -------------FSLTMLTRVNPED-----ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK---- 118 (395)
T ss_dssp -------------HHHHHHHHCCTTC-----CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----
T ss_pred -------------HHHHHHHHhccCC-----CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----
Confidence 7888887765332 366799999999999999999999887778888887776543321
Q ss_pred ccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhh-CCChHHHHHHHhhccc-cccccCCceeecCch-hHHHH
Q psy10680 179 CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKIIQMTRT-RDLCRGAEIVVATPG-RLIDF 255 (537)
Q Consensus 179 ~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~-~~~~~~l~~il~~~~~-~~~~~~~~~~saTp~-~~~~~ 255 (537)
..+++|+|+||+.+...+......+.++++||+||||++.+ .++...+..+...++. .+.. ++|||+. ....+
T Consensus 119 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i----~~SAT~~~~~~~~ 194 (395)
T 3pey_A 119 QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLV----LFSATFADAVRQY 194 (395)
T ss_dssp CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEE----EEESCCCHHHHHH
T ss_pred cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEE----EEEecCCHHHHHH
Confidence 24689999999999999988888899999999999999987 5666777777666554 3444 8999943 33333
Q ss_pred hhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchh
Q psy10680 256 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEA 335 (537)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (537)
..........+ ...... . ....................
T Consensus 195 ~~~~~~~~~~~---~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~-------------------- 232 (395)
T 3pey_A 195 AKKIVPNANTL---ELQTNE-V------------------NVDAIKQLYMDCKNEADKFD-------------------- 232 (395)
T ss_dssp HHHHSCSCEEE---CCCGGG-C------------------SCTTEEEEEEECSSHHHHHH--------------------
T ss_pred HHHhCCCCeEE---Eccccc-c------------------ccccccEEEEEcCchHHHHH--------------------
Confidence 33211110000 000000 0 00000000000000000000
Q ss_pred hhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHH
Q psy10680 336 DRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNR 415 (537)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r 415 (537)
.+........+.+.+|||.+...+..+ ...+...++.+..+||+++..+|
T Consensus 233 -----------------------------~l~~~~~~~~~~~~lvf~~~~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~r 282 (395)
T 3pey_A 233 -----------------------------VLTELYGLMTIGSSIIFVATKKTANVL-YGKLKSEGHEVSILHGDLQTQER 282 (395)
T ss_dssp -----------------------------HHHHHHTTTTSSEEEEECSCHHHHHHH-HHHHHHTTCCCEEECTTSCHHHH
T ss_pred -----------------------------HHHHHHHhccCCCEEEEeCCHHHHHHH-HHHHHhcCCcEEEeCCCCCHHHH
Confidence 001111112345567999999999998 88888889999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCC------ChhhhHhhhhcccCCCCCceeEEEecCCCcc-hH
Q psy10680 416 DQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD------NTENYVHRIGRTARSTKTGISYTLFTPLNGN-KA 488 (537)
Q Consensus 416 ~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~------s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~-~~ 488 (537)
..+++.|++|+.+|||||+++++|+|+|++++||++|.|. ++..|+||+||+||.|+.|.+++++.+.+.. ..
T Consensus 283 ~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~ 362 (395)
T 3pey_A 283 DRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNIL 362 (395)
T ss_dssp HHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHH
Confidence 9999999999999999999999999999999999999998 9999999999999999999999999875433 33
Q ss_pred HHHHHHH
Q psy10680 489 QDLIDIL 495 (537)
Q Consensus 489 ~~~~~~l 495 (537)
..+.+.+
T Consensus 363 ~~i~~~~ 369 (395)
T 3pey_A 363 SAIQKYF 369 (395)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 3333333
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7.5e-44 Score=375.16 Aligned_cols=361 Identities=25% Similarity=0.395 Sum_probs=151.4
Q ss_pred cceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccC--CcEEEEccCCCccccccccccchhccccccCCCC
Q psy10680 17 PYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSG--RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSN 94 (537)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~--~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~ 94 (537)
|..+...|..+.+++.+.++|. .+||..|+++|.++++.++++ ++++++||||||||++
T Consensus 87 ~~~~~~~f~~~~l~~~l~~~l~-~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~------------------ 147 (479)
T 3fmp_B 87 PLYSVKSFEELRLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA------------------ 147 (479)
T ss_dssp CCCCCCCSGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHH------------------
T ss_pred CccCcCCHHHcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHH------------------
Confidence 3345668899999999999995 599999999999999999987 8999999999999999
Q ss_pred CcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcchhH
Q psy10680 95 TSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMY 173 (537)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 173 (537)
|++|++..+.... .++++|||+||++|+.|+.+.++.+.... ++.+....++.....
T Consensus 148 -----------------~~l~il~~l~~~~-----~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (479)
T 3fmp_B 148 -----------------FVLAMLSQVEPAN-----KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 205 (479)
T ss_dssp -----------------HHHHHHTTCCTTS-----CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT
T ss_pred -----------------HHHHHHHHHhhcC-----CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc
Confidence 7888877765432 25679999999999999999998876543 566666666654332
Q ss_pred hHHHhccCCcEEEeCCchhHHHHhc-CcccccceeEEEecchhhhhh-CCChHHHHHHHhhccc-cccccCCceeecCc-
Q psy10680 174 QTRDLCRGAEIVVATPGRLIDFLES-GTTNVNRITYLVLDEADRMLD-MGFEPQIRKIIQMTRT-RDLCRGAEIVVATP- 249 (537)
Q Consensus 174 ~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~l~liV~DE~h~~~~-~~~~~~l~~il~~~~~-~~~~~~~~~~saTp- 249 (537)
. ...+++|+|+||+++...+.+ ....+.++++||+||||++.+ .++...+..+...++. .+.+ ++|||+
T Consensus 206 ~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i----~~SAT~~ 278 (479)
T 3fmp_B 206 G---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML----LFSATFE 278 (479)
T ss_dssp T---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEE----EEESCCC
T ss_pred c---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEE----EEeCCCC
Confidence 1 124678999999999998855 556789999999999999987 4666677777766554 3444 899994
Q ss_pred hhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceee
Q psy10680 250 GRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITY 329 (537)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (537)
.....+........ ..+......... ..+.+.... .........
T Consensus 279 ~~~~~~~~~~~~~~---~~i~~~~~~~~~-----~~~~~~~~~--------------~~~~~~~~~-------------- 322 (479)
T 3fmp_B 279 DSVWKFAQKVVPDP---NVIKLKREEETL-----DTIKQYYVL--------------CSSRDEKFQ-------------- 322 (479)
T ss_dssp HHHHHHHHHHSSSE---EEEEEC---------------------------------------------------------
T ss_pred HHHHHHHHHHcCCC---eEEeccccccCc-----CCceEEEEE--------------eCCHHHHHH--------------
Confidence 43333333211111 011110000000 000000000 000000000
Q ss_pred eecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCC
Q psy10680 330 LVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGD 409 (537)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 409 (537)
.+..........+.+|||.+...+..+ +..+...++.+..+||+
T Consensus 323 -----------------------------------~l~~~~~~~~~~~~lvF~~s~~~~~~l-~~~L~~~~~~v~~lh~~ 366 (479)
T 3fmp_B 323 -----------------------------------ALCNLYGAITIAQAMIFCHTRKTASWL-AAELSKEGHQVALLSGE 366 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------HHHHHHhhccCCceEEEeCcHHHHHHH-HHHHHhCCccEEEecCC
Confidence 000000011123455999999999999 88888889999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCC------CChhhhHhhhhcccCCCCCceeEEEecCC
Q psy10680 410 KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFP------DNTENYVHRIGRTARSTKTGISYTLFTPL 483 (537)
Q Consensus 410 ~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p------~s~~~~~Q~~GRagR~~~~g~~~~l~~~~ 483 (537)
++..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|+.|.+++++++.
T Consensus 367 ~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 367 MMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 999999999999999999999999999999999999999999999 46789999999999999999999999876
Q ss_pred C-cchHHHHHHHHHH
Q psy10680 484 N-GNKAQDLIDILNE 497 (537)
Q Consensus 484 ~-~~~~~~~~~~l~~ 497 (537)
+ ...+..+.+.++.
T Consensus 447 ~~~~~~~~i~~~~~~ 461 (479)
T 3fmp_B 447 HSMNILNRIQEHFNK 461 (479)
T ss_dssp ---------------
T ss_pred chHHHHHHHHHHhCC
Confidence 5 5556666666554
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.2e-42 Score=369.25 Aligned_cols=377 Identities=16% Similarity=0.213 Sum_probs=265.2
Q ss_pred eeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccC
Q psy10680 26 VLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNN 105 (537)
Q Consensus 26 ~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (537)
...+++.+...|.+.+||..|+++|.++++.+++|+++++++|||+|||++
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~----------------------------- 75 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLC----------------------------- 75 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHH-----------------------------
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHH-----------------------------
Confidence 366888999999767899999999999999999999999999999999999
Q ss_pred ccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH---h---c
Q psy10680 106 NVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD---L---C 179 (537)
Q Consensus 106 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l---~ 179 (537)
|++|++.. ++++|||+|+++|+.|+.+.++.+ ++++..++++....+.... + .
T Consensus 76 ------~~lpal~~-----------~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~ 134 (591)
T 2v1x_A 76 ------YQLPALCS-----------DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKN 134 (591)
T ss_dssp ------HHHHHHTS-----------SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTT
T ss_pred ------HHHHHHHc-----------CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhccc
Confidence 88888652 457999999999999999999875 6778888888776544322 2 3
Q ss_pred cCCcEEEeCCchhHH---HHh--cCcccccceeEEEecchhhhhhCC--ChHHHHH---HHhhccccccccCCceeecCc
Q psy10680 180 RGAEIVVATPGRLID---FLE--SGTTNVNRITYLVLDEADRMLDMG--FEPQIRK---IIQMTRTRDLCRGAEIVVATP 249 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~---~l~--~~~~~~~~l~liV~DE~h~~~~~~--~~~~l~~---il~~~~~~~~~~~~~~~saTp 249 (537)
.+++|+|+||++|.. ++. .....+.++++|||||||++.+++ |.+.+.. +....+..+.+ ++|||+
T Consensus 135 ~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii----~lSAT~ 210 (591)
T 2v1x_A 135 SELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLI----GLTATA 210 (591)
T ss_dssp CCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEE----EEESSC
T ss_pred CCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEE----EEecCC
Confidence 478999999998742 221 123456789999999999999876 6655543 22333334444 899994
Q ss_pred -hhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhcccccccee
Q psy10680 250 -GRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRIT 328 (537)
Q Consensus 250 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (537)
......+.... ......... . .+. ...+.
T Consensus 211 ~~~v~~~i~~~l-~~~~~~~~~--~-------~~~----------------------------------------r~nl~ 240 (591)
T 2v1x_A 211 TNHVLTDAQKIL-CIEKCFTFT--A-------SFN----------------------------------------RPNLY 240 (591)
T ss_dssp CHHHHHHHHHHT-TCCSCEEEE--C-------CCC----------------------------------------CTTEE
T ss_pred CHHHHHHHHHHh-CCCCcEEEe--c-------CCC----------------------------------------CcccE
Confidence 33322222201 000000000 0 000 00000
Q ss_pred eeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccC
Q psy10680 329 YLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHG 408 (537)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~ 408 (537)
+.+..... ..... ...++..+.....+...+|||.++..++.+ +..|...|+.+..+||
T Consensus 241 ~~v~~~~~-----~~~~~---------------~~~l~~~l~~~~~~~~~IVf~~sr~~~e~l-a~~L~~~g~~~~~~h~ 299 (591)
T 2v1x_A 241 YEVRQKPS-----NTEDF---------------IEDIVKLINGRYKGQSGIIYCFSQKDSEQV-TVSLQNLGIHAGAYHA 299 (591)
T ss_dssp EEEEECCS-----SHHHH---------------HHHHHHHHTTTTTTCEEEEECSSHHHHHHH-HHHHHHTTCCEEEECT
T ss_pred EEEEeCCC-----cHHHH---------------HHHHHHHHHHhccCCCeEEEeCcHHHHHHH-HHHHHHCCCCEEEecC
Confidence 00000000 00000 000011111111345677999999999999 8888888999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchH
Q psy10680 409 DKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKA 488 (537)
Q Consensus 409 ~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~ 488 (537)
+|+..+|..+++.|++|+.+|||||+++++|||+|++++||++++|.|...|+|++|||||.|..|.+++++.+.|....
T Consensus 300 ~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~ 379 (591)
T 2v1x_A 300 NLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRI 379 (591)
T ss_dssp TSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998776655
Q ss_pred HHHHHHHHHccccccHHHHHHHhcCCCCChhhhhhHhhhhh
Q psy10680 489 QDLIDILNEAHQFVPDRLLLLAAKNKPITTRQWKREYWRRK 529 (537)
Q Consensus 489 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 529 (537)
..+...- ..+......|..++ .+...+.++...+||+..
T Consensus 380 ~~~~~~~-~~~~~~l~~~~~~~-~~~~~Crr~~ll~~f~e~ 418 (591)
T 2v1x_A 380 SSMVVME-NVGQQKLYEMVSYC-QNISKCRRVLMAQHFDEV 418 (591)
T ss_dssp HHHTTTS-TTHHHHHHHHHHHH-TCSSSCHHHHHHHHHTCC
T ss_pred HHHHhhh-hhhHHHHHHHHHHH-hcccccHHHHHHHHcCCC
Confidence 5544321 11111122333343 235678888888888765
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=5.7e-42 Score=362.40 Aligned_cols=375 Identities=19% Similarity=0.257 Sum_probs=266.7
Q ss_pred CcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccccc
Q psy10680 23 YINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSW 102 (537)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (537)
.++.+.+++.+...|.+.+||..|+++|.++++.+++|+++++++|||+|||++
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~-------------------------- 56 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLC-------------------------- 56 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHH--------------------------
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHH--------------------------
Confidence 466778899999999767999999999999999999999999999999999999
Q ss_pred ccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH---h-
Q psy10680 103 WNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD---L- 178 (537)
Q Consensus 103 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l- 178 (537)
|++|++.. ++.+||++|+++|+.|+.+.++.+ ++.+..++++....+.... +
T Consensus 57 ---------~~lp~l~~-----------~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~ 112 (523)
T 1oyw_A 57 ---------YQIPALLL-----------NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCR 112 (523)
T ss_dssp ---------HHHHHHHS-----------SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ---------HHHHHHHh-----------CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHh
Confidence 78887743 356899999999999999999864 5677778887665443322 2
Q ss_pred ccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCC--ChHHHHHH---HhhccccccccCCceeecCchhH-
Q psy10680 179 CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMG--FEPQIRKI---IQMTRTRDLCRGAEIVVATPGRL- 252 (537)
Q Consensus 179 ~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~--~~~~l~~i---l~~~~~~~~~~~~~~~saTp~~~- 252 (537)
....+|+++||+++............++++||+||||++.+++ |...+..+ ....+..+.. .+|||+...
T Consensus 113 ~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i----~lSAT~~~~~ 188 (523)
T 1oyw_A 113 TGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFM----ALTATADDTT 188 (523)
T ss_dssp HTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEE----EEESCCCHHH
T ss_pred cCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEE----EEeCCCCHHH
Confidence 3468999999999863222222344789999999999998876 55555443 3333333344 889995322
Q ss_pred HH-HhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeee
Q psy10680 253 ID-FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLV 331 (537)
Q Consensus 253 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (537)
.. ........-. ... .. .+ ....+.+..
T Consensus 189 ~~~i~~~l~~~~~-~~~--~~--------~~----------------------------------------~r~~l~~~v 217 (523)
T 1oyw_A 189 RQDIVRLLGLNDP-LIQ--IS--------SF----------------------------------------DRPNIRYML 217 (523)
T ss_dssp HHHHHHHHTCCSC-EEE--EC--------CC----------------------------------------CCTTEEEEE
T ss_pred HHHHHHHhCCCCC-eEE--eC--------CC----------------------------------------CCCceEEEE
Confidence 11 1111000000 000 00 00 000000110
Q ss_pred cchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCC
Q psy10680 332 LDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKS 411 (537)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 411 (537)
..... . ...++.. .....+.+.+|||.++..++.+ +..|...++.+..+||+|+
T Consensus 218 ~~~~~---------~---------------~~~l~~~-l~~~~~~~~IVf~~sr~~~e~l-~~~L~~~g~~~~~~h~~l~ 271 (523)
T 1oyw_A 218 MEKFK---------P---------------LDQLMRY-VQEQRGKSGIIYCNSRAKVEDT-AARLQSKGISAAAYHAGLE 271 (523)
T ss_dssp EECSS---------H---------------HHHHHHH-HHHTTTCCEEEECSSHHHHHHH-HHHHHHTTCCEEEECTTSC
T ss_pred EeCCC---------H---------------HHHHHHH-HHhcCCCcEEEEeCCHHHHHHH-HHHHHHCCCCEEEecCCCC
Confidence 00000 0 0001111 1112455678999999999999 8888888999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHH
Q psy10680 412 QWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDL 491 (537)
Q Consensus 412 ~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~ 491 (537)
..+|..+++.|++|+.+|||||+++++|||+|++++||++|.|.|...|.||+||+||.|..|.+++++++.|......+
T Consensus 272 ~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~ 351 (523)
T 1oyw_A 272 NNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (523)
T ss_dssp HHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887666655
Q ss_pred HHH-----HHHccccccHHHHHHHhcCCCCChhhhhhHhhhhhh
Q psy10680 492 IDI-----LNEAHQFVPDRLLLLAAKNKPITTRQWKREYWRRKS 530 (537)
Q Consensus 492 ~~~-----l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 530 (537)
++. ..+....--+.|..+++ ...|.++...+||+...
T Consensus 352 ~~~~~~~~~~~~~~~~l~~m~~~~~--~~~crr~~l~~~f~e~~ 393 (523)
T 1oyw_A 352 LEEKPQGQLQDIERHKLNAMGAFAE--AQTCRRLVLLNYFGEGR 393 (523)
T ss_dssp HHTSCCSHHHHHHHHHHHHHHHHHT--CSSCHHHHHHHHTTCCC
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHh--ccccHhhhhHhhcCCCC
Confidence 542 00000111123444554 35688888999998654
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-42 Score=362.30 Aligned_cols=358 Identities=25% Similarity=0.384 Sum_probs=224.7
Q ss_pred cceeeehhhhhhcccccCCCCCCChhhhhhhhccccC--CcEEEEccCCCccccccccccchhccccccCCCCCcccccc
Q psy10680 24 INVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSG--RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESS 101 (537)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~--~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (537)
+....+++.+.+.+. ..|+..|+++|.++++.++++ +++++++|||+|||++
T Consensus 121 ~~~~~l~~~~~~~l~-~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~------------------------- 174 (508)
T 3fho_A 121 XXXXXXXXXXXXXXX-XXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAA------------------------- 174 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHH-------------------------
T ss_pred ccccccccccccccc-cccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHH-------------------------
Confidence 445566777777774 579999999999999999998 8999999999999999
Q ss_pred cccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccC
Q psy10680 102 WWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRG 181 (537)
Q Consensus 102 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (537)
|+++++..+.... .++++||++|+++|+.|+.+.++.++...++.+....++..... ...+
T Consensus 175 ----------~~~~il~~l~~~~-----~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 235 (508)
T 3fho_A 175 ----------FALTMLSRVDASV-----PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKID 235 (508)
T ss_dssp ----------HHHHHHHHSCTTC-----CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCC
T ss_pred ----------HHHHHHHHHHhCC-----CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCC
Confidence 7888887765432 25679999999999999999999988776666665555443322 2347
Q ss_pred CcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhh-CCChHHHHHHHhhccc-cccccCCceeecCchh-HHHHhhh
Q psy10680 182 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKIIQMTRT-RDLCRGAEIVVATPGR-LIDFLES 258 (537)
Q Consensus 182 ~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~-~~~~~~l~~il~~~~~-~~~~~~~~~~saTp~~-~~~~l~~ 258 (537)
++|+|+||+.+.+.+......+.++++||+||||++.+ .++...+..+...++. .+.+ ++|||+.. ...+...
T Consensus 236 ~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i----~lSAT~~~~~~~~~~~ 311 (508)
T 3fho_A 236 AQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIV----LFSATFSERVEKYAER 311 (508)
T ss_dssp CSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEE----EEESCCSTHHHHHHHH
T ss_pred CCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEE----EEeCCCCHHHHHHHHH
Confidence 89999999999999988888899999999999999987 5678888888877664 3344 89999543 3333222
Q ss_pred CCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCccccee-ehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 259 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSL-FISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
...... ........ . .. . ......... ....+...+.
T Consensus 312 ~~~~~~---~i~~~~~~-~-------~~----~----~~~~~~~~~~~~~~k~~~l~----------------------- 349 (508)
T 3fho_A 312 FAPNAN---EIRLKTEE-L-------SV----E----GIKQLYMDCQSEEHKYNVLV----------------------- 349 (508)
T ss_dssp HSTTCE---EECCCCCC--------------------CCCCEEEEC--CHHHHHHHH-----------------------
T ss_pred hcCCCe---EEEecccc-C-------Cc----c----cceEEEEECCchHHHHHHHH-----------------------
Confidence 111100 00000000 0 00 0 000000000 0000000000
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQ 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~ 417 (537)
.......+.+.+|||.+...+..+ ...+...+..+..+||+++..+|..
T Consensus 350 ------------------------------~ll~~~~~~~~LVF~~s~~~a~~l-~~~L~~~~~~v~~~hg~~~~~~R~~ 398 (508)
T 3fho_A 350 ------------------------------ELYGLLTIGQSIIFCKKKDTAEEI-ARRMTADGHTVACLTGNLEGAQRDA 398 (508)
T ss_dssp ------------------------------HHHC---CCCEEEBCSSTTTTTHH-HHHHTTTTCCCCEEC-----CTTGG
T ss_pred ------------------------------HHHHhcCCCcEEEEECCHHHHHHH-HHHHHhCCCcEEEEeCCCCHHHHHH
Confidence 011111334566999999999999 8888888999999999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCC------CChhhhHhhhhcccCCCCCceeEEEecC-CCcchHHH
Q psy10680 418 TLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFP------DNTENYVHRIGRTARSTKTGISYTLFTP-LNGNKAQD 490 (537)
Q Consensus 418 ~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p------~s~~~~~Q~~GRagR~~~~g~~~~l~~~-~~~~~~~~ 490 (537)
+++.|++|+.+|||||+++++|+|+|++++||++|.| .++..|+||+||+||.|+.|.+++++.+ .+...+..
T Consensus 399 il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~ 478 (508)
T 3fho_A 399 IMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNA 478 (508)
T ss_dssp GTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHH
T ss_pred HHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHH
Confidence 9999999999999999999999999999999999999 8899999999999999999999999985 45666777
Q ss_pred HHHHHHHcccccc
Q psy10680 491 LIDILNEAHQFVP 503 (537)
Q Consensus 491 ~~~~l~~~~~~~~ 503 (537)
+.+.+...-..+|
T Consensus 479 i~~~~~~~i~~l~ 491 (508)
T 3fho_A 479 IQEYFQRPITRVP 491 (508)
T ss_dssp HHHHSCCCCC---
T ss_pred HHHHHCCCcccCC
Confidence 7777665444444
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.5e-41 Score=349.38 Aligned_cols=328 Identities=20% Similarity=0.231 Sum_probs=236.3
Q ss_pred hhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccch
Q psy10680 34 SRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYI 113 (537)
Q Consensus 34 ~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (537)
...+.+.+|+ .|+++|.++++.+++|+++++++|||+|||++ |+
T Consensus 11 ~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~-----------------------------------~l 54 (414)
T 3oiy_A 11 RSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTF-----------------------------------GM 54 (414)
T ss_dssp HHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHH-----------------------------------HH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHH-----------------------------------HH
Confidence 3444444677 89999999999999999999999999999998 77
Q ss_pred hhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcch---hHhHHHhccC-CcEEEeCC
Q psy10680 114 LPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK---MYQTRDLCRG-AEIVVATP 189 (537)
Q Consensus 114 l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~-~~Ivv~Tp 189 (537)
++++.... .++++||++||++|+.|+.+.++.+.. .++++..++|+... ..+...+..+ ++|+|+||
T Consensus 55 ~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp 125 (414)
T 3oiy_A 55 MTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 125 (414)
T ss_dssp HHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEH
T ss_pred HHHHHHhc--------CCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECH
Confidence 77776552 267799999999999999999999877 78999999999887 4445555554 99999999
Q ss_pred chhHHHHhcCcccccceeEEEecchhhhhh-----------CCChHH-HHHHHhhccc--------cccccCCceeecC-
Q psy10680 190 GRLIDFLESGTTNVNRITYLVLDEADRMLD-----------MGFEPQ-IRKIIQMTRT--------RDLCRGAEIVVAT- 248 (537)
Q Consensus 190 ~~l~~~l~~~~~~~~~l~liV~DE~h~~~~-----------~~~~~~-l~~il~~~~~--------~~~~~~~~~~saT- 248 (537)
+++.+.+.. ..+.++++||+||||++.+ .+|... +..++..++. .....+..++|||
T Consensus 126 ~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~ 203 (414)
T 3oiy_A 126 QFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATA 203 (414)
T ss_dssp HHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCS
T ss_pred HHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCC
Confidence 999887764 5667899999999998764 556666 7777776640 0011223378888
Q ss_pred ch-hHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccce
Q psy10680 249 PG-RLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRI 327 (537)
Q Consensus 249 p~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (537)
+. .....+. ...... ...... .....+
T Consensus 204 ~~~~~~~~~~-----------------------------~~~~~~-~~~~~~----------------------~~~~~i 231 (414)
T 3oiy_A 204 KPRGIRPLLF-----------------------------RDLLNF-TVGRLV----------------------SVARNI 231 (414)
T ss_dssp SCCSSTTHHH-----------------------------HHHHSC-CSSCCC----------------------CCCCSE
T ss_pred CcchhHHHHH-----------------------------HHhhcc-CcCccc----------------------cccccc
Confidence 22 1110000 000000 000000 000000
Q ss_pred eeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccc-cc
Q psy10680 328 TYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAM-GI 406 (537)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~-~~ 406 (537)
....... .....+...+.. .+.+.+|||.+...++.+ ...+...++.+. .+
T Consensus 232 ~~~~~~~-------------------------~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l-~~~L~~~~~~~~~~~ 283 (414)
T 3oiy_A 232 THVRISS-------------------------RSKEKLVELLEI--FRDGILIFAQTEEEGKEL-YEYLKRFKFNVGETW 283 (414)
T ss_dssp EEEEESS-------------------------CCHHHHHHHHHH--HCSSEEEEESSHHHHHHH-HHHHHHTTCCEEESS
T ss_pred hheeecc-------------------------CHHHHHHHHHHH--cCCCEEEEECCHHHHHHH-HHHHHHcCCceehhh
Confidence 0000000 000001111111 335667999999999998 888888899998 89
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEE----ecccccCCCcCC-ccEEEEecCC--CChhhhHhhhhcccCCC----CCce
Q psy10680 407 HGDKSQWNRDQTLRDFRSGYINVLIA----SDVASRGLDVED-IKYVVNYDFP--DNTENYVHRIGRTARST----KTGI 475 (537)
Q Consensus 407 ~~~~~~~~r~~~~~~f~~g~~~iLva----T~~l~~Gidi~~-~~~Vi~~d~p--~s~~~~~Q~~GRagR~~----~~g~ 475 (537)
||. + ++ ++.|++|+.+|||| |+++++|+|+|+ +++||++|.| .++..|+||+||+||.| ..|.
T Consensus 284 h~~----~-r~-~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~ 357 (414)
T 3oiy_A 284 SEF----E-KN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGV 357 (414)
T ss_dssp SCH----H-HH-HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEE
T ss_pred cCc----c-hH-HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceE
Confidence 984 3 34 99999999999999 999999999999 9999999999 99999999999999988 4789
Q ss_pred eEEEecCCCcchHHHHHHHHH
Q psy10680 476 SYTLFTPLNGNKAQDLIDILN 496 (537)
Q Consensus 476 ~~~l~~~~~~~~~~~~~~~l~ 496 (537)
+++++ .+...+..+.+.++
T Consensus 358 ~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 358 SVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEEC--CCHHHHHHHHHHHH
T ss_pred EEEEE--ccHHHHHHHHHHhc
Confidence 99888 66667777777777
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.8e-39 Score=348.33 Aligned_cols=397 Identities=15% Similarity=0.151 Sum_probs=195.0
Q ss_pred CCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhh
Q psy10680 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHIL 121 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 121 (537)
+...|+++|.++++.+++|+++++++|||+|||++ |++|++..+.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~-----------------------------------~~~~~~~~~~ 48 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFV-----------------------------------SILICEHHFQ 48 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHH-----------------------------------HHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHH-----------------------------------HHHHHHHHHH
Confidence 34589999999999999999999999999999999 8888887776
Q ss_pred cCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcc
Q psy10680 122 KMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTT 201 (537)
Q Consensus 122 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 201 (537)
..+. ..++++||++||++|+.|+.+.++.++...++++..++|+.....++..+..+++|+|+||+++.+.+.....
T Consensus 49 ~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~ 125 (556)
T 4a2p_A 49 NMPA---GRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTL 125 (556)
T ss_dssp TCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSC
T ss_pred hCcc---cCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcc
Confidence 5432 2256799999999999999999999988888999999999887777667667899999999999999988777
Q ss_pred -cccceeEEEecchhhhhhCCChHHHH-HHHhh-ccccccccCCceeecCchh-----HHHHhhh---CCcccccceeee
Q psy10680 202 -NVNRITYLVLDEADRMLDMGFEPQIR-KIIQM-TRTRDLCRGAEIVVATPGR-----LIDFLES---GTTNVNRITYLV 270 (537)
Q Consensus 202 -~~~~l~liV~DE~h~~~~~~~~~~l~-~il~~-~~~~~~~~~~~~~saTp~~-----~~~~l~~---~~~~~~~~~~~~ 270 (537)
.+.++++||+||||++.+++....+. ..+.. ........+..++||||.. +..++.. ....+.......
T Consensus 126 ~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~ 205 (556)
T 4a2p_A 126 TSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST 205 (556)
T ss_dssp CCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEC
T ss_pred cccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecc
Confidence 78999999999999998765433322 22211 1000111223488999721 1111110 000000000000
Q ss_pred ccchhhhhcCCChHHHHHHHHhhhcCCCccc--ceeehhhhH----HHHHHHHhhccccccceee-----e-------ec
Q psy10680 271 LDEADRMLDMGFEPQIRKIIQMTRHAHPVVP--VSLFISERR----DTILHFLESGTTNVNRITY-----L-------VL 332 (537)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~-------~~ 332 (537)
.. .....+............... ......... ..+......... ...... + .+
T Consensus 206 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~ 276 (556)
T 4a2p_A 206 VR--------ENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYS-VDTLSQNSKKDFGTQNYEHWI 276 (556)
T ss_dssp CC--------TTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC----------CCCSSHHHHHHH
T ss_pred hh--------cchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhh-hhhhhcccccccchhhHHHHH
Confidence 00 000011111000000000000 000000001 111111110000 000000 0 00
Q ss_pred chhh---hhhcCCCh---------------------------------hH---HHHH----------------h------
Q psy10680 333 DEAD---RMLDMGFE---------------------------------PQ---IRKI----------------I------ 351 (537)
Q Consensus 333 ~~~~---~~~~~~~~---------------------------------~~---~~~~----------------~------ 351 (537)
.... ........ .. .... .
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (556)
T 4a2p_A 277 VVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEK 356 (556)
T ss_dssp HHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhH
Confidence 0000 00000000 00 0000 0
Q ss_pred -------hhccccceeechhhHHHHH---HhHhCceeEEEEeeccCcccccccccccc------------ccccccccCC
Q psy10680 352 -------QMTRFNTCVFLGYVLYFWF---ILVAGIERWVFMEINHNGTETKHYGVSSS------------LYRAMGIHGD 409 (537)
Q Consensus 352 -------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~if~~~~~~~~~l~~~~l~~~------------~~~~~~~~~~ 409 (537)
.............+...+. ....+.+.+|||.....+..+ ...+... |.....+||+
T Consensus 357 ~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l-~~~L~~~~~~~~~~~~~~~g~~~~~~~~~ 435 (556)
T 4a2p_A 357 EPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSAL-KKCMEENPILNYIKPGVLMGRGRRDQTTG 435 (556)
T ss_dssp HHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHH-HHHHTTCSGGGSCCEEC------------
T ss_pred HHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHH-HHHHHhCCCcceeeeeEEEccCCcccccc
Confidence 0000000111111222221 114567899999999999888 6666543 4555667889
Q ss_pred CCHHHHHHHHHHHhc-CCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchH
Q psy10680 410 KSQWNRDQTLRDFRS-GYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKA 488 (537)
Q Consensus 410 ~~~~~r~~~~~~f~~-g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~ 488 (537)
|+..+|..+++.|++ |+++|||||+++++|+|+|++++||+||+|+|+..|+||+|| ||. ..|.+++++.+.+....
T Consensus 436 ~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 436 MTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp ------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred cCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 999999999999999 999999999999999999999999999999999999999999 998 88999999988655433
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3e-39 Score=355.79 Aligned_cols=413 Identities=15% Similarity=0.193 Sum_probs=214.8
Q ss_pred hcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchh
Q psy10680 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYIL 114 (537)
Q Consensus 35 ~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (537)
..| +.+|+..|+++|.++++.+++|+++++++|||+|||++ |++
T Consensus 4 ~~l-~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~-----------------------------------~~~ 47 (696)
T 2ykg_A 4 SDT-NLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFV-----------------------------------SLL 47 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH-----------------------------------HHH
T ss_pred Ccc-cccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHH-----------------------------------HHH
Confidence 344 46899999999999999999999999999999999999 888
Q ss_pred hHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHH
Q psy10680 115 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLID 194 (537)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~ 194 (537)
|++..+...+. +.++++||++||++|+.|+.+.++.++...++++..++|+.....+...+..+++|+|+||+.|.+
T Consensus 48 ~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~ 124 (696)
T 2ykg_A 48 ICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVN 124 (696)
T ss_dssp HHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHH
T ss_pred HHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHH
Confidence 88877765431 124679999999999999999999998877899999999987766666666789999999999999
Q ss_pred HHhcCcc-cccceeEEEecchhhhhhCCChHHH-HHHHhhcc--ccccccCCceeecCch--------hHHHHhhhCCcc
Q psy10680 195 FLESGTT-NVNRITYLVLDEADRMLDMGFEPQI-RKIIQMTR--TRDLCRGAEIVVATPG--------RLIDFLESGTTN 262 (537)
Q Consensus 195 ~l~~~~~-~~~~l~liV~DE~h~~~~~~~~~~l-~~il~~~~--~~~~~~~~~~~saTp~--------~~~~~l~~~~~~ 262 (537)
.+..... .+.++++|||||||++.+......+ ...+...- .........++||||. .....+......
T Consensus 125 ~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~ 204 (696)
T 2ykg_A 125 NLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCAS 204 (696)
T ss_dssp HHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHH
T ss_pred HHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHh
Confidence 9988776 7899999999999998865422222 12222210 0011223348899974 111111110000
Q ss_pred cccceeeec-cchhh---hh--------------cCCCh-------HHHHHHHHhhhcCCCc---ccceeehhhhHHHHH
Q psy10680 263 VNRITYLVL-DEADR---ML--------------DMGFE-------PQIRKIIQMTRHAHPV---VPVSLFISERRDTIL 314 (537)
Q Consensus 263 ~~~~~~~~~-~~~~~---~~--------------~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 314 (537)
......... ..... .. ...+. ..+..+.......... .....+.........
T Consensus 205 l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (696)
T 2ykg_A 205 LDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWI 284 (696)
T ss_dssp TTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHH
T ss_pred cCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHH
Confidence 000000000 00000 00 00000 0111111111100000 000000000000000
Q ss_pred HHHhhc--------------------------------------cccccceeeeecchhhhhhcCCChhHHHHHhh----
Q psy10680 315 HFLESG--------------------------------------TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ---- 352 (537)
Q Consensus 315 ~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 352 (537)
...... ........ ....................+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (696)
T 2ykg_A 285 VTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD-YLKDFFSNVRAAGFDEIEQDLTQRFEE 363 (696)
T ss_dssp HHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHH-HHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 000000 00000000 00000000000000000000000
Q ss_pred -------h--ccccceeechhhHHHHHHh---HhCceeEEEEeeccCccccccccccccc----cccccc--------cC
Q psy10680 353 -------M--TRFNTCVFLGYVLYFWFIL---VAGIERWVFMEINHNGTETKHYGVSSSL----YRAMGI--------HG 408 (537)
Q Consensus 353 -------~--~~~~~~~~~~~~~~~~~~~---~~~~~~~if~~~~~~~~~l~~~~l~~~~----~~~~~~--------~~ 408 (537)
. ...........+...+... ..+.+.+|||.+...++.+ ...|...+ +++..+ ||
T Consensus 364 ~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l-~~~L~~~~~~~~~~~~~l~G~~~~~~h~ 442 (696)
T 2ykg_A 364 KLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL-KNWIEGNPKLSFLKPGILTGRGKTNQNT 442 (696)
T ss_dssp THHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHH-HHHHHHCTTCCSCCEEC-----------
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHH-HHHHHhCCCccccceeEEEccCCCcccc
Confidence 0 0000111122222222222 2567889999999999998 77777766 677777 56
Q ss_pred CCCHHHHHHHHHHHhc-CCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcch
Q psy10680 409 DKSQWNRDQTLRDFRS-GYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNK 487 (537)
Q Consensus 409 ~~~~~~r~~~~~~f~~-g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~ 487 (537)
+|+..+|.++++.|++ |+.+|||||+++++|||+|++++||+||+|.++..|+||+|| ||. ..|.+++++...+...
T Consensus 443 ~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 443 GMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp ------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHH
Confidence 9999999999999998 999999999999999999999999999999999999999999 998 7899999998766544
Q ss_pred HHH
Q psy10680 488 AQD 490 (537)
Q Consensus 488 ~~~ 490 (537)
...
T Consensus 521 ~~~ 523 (696)
T 2ykg_A 521 KEQ 523 (696)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 21
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6e-39 Score=344.02 Aligned_cols=396 Identities=16% Similarity=0.194 Sum_probs=222.1
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.|+++|.++++.++.|+++++++|||+|||++ |++|++..+...+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~-----------------------------------~~~~~~~~~~~~~ 48 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFV-----------------------------------SLLICEHHLKKFP 48 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH-----------------------------------HHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHH-----------------------------------HHHHHHHHHHhcc
Confidence 79999999999999999999999999999999 8888888776543
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcc-cc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTT-NV 203 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~-~~ 203 (537)
. ..++++||++||++|+.|+.+.++.++...++++..++|+.....++..+..+++|+|+||+++...+..... .+
T Consensus 49 ~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~ 125 (555)
T 3tbk_A 49 C---GQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSL 125 (555)
T ss_dssp S---SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCG
T ss_pred c---CCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCccccc
Confidence 2 2356799999999999999999999988888999999999987777677767899999999999999988777 78
Q ss_pred cceeEEEecchhhhhhCCChHH-HHHHHhhcccc--ccccCCceeecCchh------------HHHHhhhCCc-cccc--
Q psy10680 204 NRITYLVLDEADRMLDMGFEPQ-IRKIIQMTRTR--DLCRGAEIVVATPGR------------LIDFLESGTT-NVNR-- 265 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~~~~~-l~~il~~~~~~--~~~~~~~~~saTp~~------------~~~~l~~~~~-~~~~-- 265 (537)
.++++||+||||++.+.+.... +...+...... ....+..++||||.. +......... .+..
T Consensus 126 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 205 (555)
T 3tbk_A 126 SVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVR 205 (555)
T ss_dssp GGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCC
T ss_pred ccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccc
Confidence 9999999999999987642222 22222221100 011223489999722 1111111110 0000
Q ss_pred --------------ceeeeccchhhhhcCCChHHHHHHHHhhhc--------------C-CCcccc--------------
Q psy10680 266 --------------ITYLVLDEADRMLDMGFEPQIRKIIQMTRH--------------A-HPVVPV-------------- 302 (537)
Q Consensus 266 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~-------------- 302 (537)
......+. .....+...+......... . ......
T Consensus 206 ~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 282 (555)
T 3tbk_A 206 DNVAELEQVVYKPQKISRKVAS---RTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKAC 282 (555)
T ss_dssp SCHHHHHTTCCCCCEEEEECCC---CSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHH
T ss_pred cCHHHHHhhcCCCceEEEEecC---cccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHh
Confidence 00000000 0000000000000000000 0 000000
Q ss_pred -------e-----------------------------eehhhhHHHHHHHHhhccccccceeeeecchhhhhhc--CCCh
Q psy10680 303 -------S-----------------------------LFISERRDTILHFLESGTTNVNRITYLVLDEADRMLD--MGFE 344 (537)
Q Consensus 303 -------~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 344 (537)
. .........+..+...... .. .......... ....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~ 356 (555)
T 3tbk_A 283 SVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVRE----AA--FDETERELTRRFEEKL 356 (555)
T ss_dssp HTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----------HHHHHHHHHHTTH
T ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh----cc--cchHHHHHHHHHhhhh
Confidence 0 0000000000011100000 00 0000000000 0000
Q ss_pred hHHHHHhhhccccceeechhhHHHH---HHhHhCceeEEEEeeccCccccccccccccc------------cccccccCC
Q psy10680 345 PQIRKIIQMTRFNTCVFLGYVLYFW---FILVAGIERWVFMEINHNGTETKHYGVSSSL------------YRAMGIHGD 409 (537)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~------------~~~~~~~~~ 409 (537)
...... .............+...+ .....+.+.+|||.....+..+ ...|...+ .....+||+
T Consensus 357 ~~~~~~-~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l-~~~L~~~~~~~~~~~~~~~g~~~~~~~~~ 434 (555)
T 3tbk_A 357 EELEKV-SRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDAL-KKWIEENPALSFLKPGILTGRGRTNRATG 434 (555)
T ss_dssp HHHHHH-HHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHH-HHHHHHCGGGTTCCEEECCC---------
T ss_pred hhhhhh-ccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHH-HHHHhhCcCcCceeeeEEEecCCcccccc
Confidence 000000 000000111112222222 2223457899999999999888 66665543 344556789
Q ss_pred CCHHHHHHHHHHHhc-CCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchH
Q psy10680 410 KSQWNRDQTLRDFRS-GYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKA 488 (537)
Q Consensus 410 ~~~~~r~~~~~~f~~-g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~ 488 (537)
|+..+|..+++.|++ |+++|||||+++++|+|+|++++||+||+|+|+..|+||+|| ||. ..|.+++++.+.+....
T Consensus 435 ~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 435 MTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp -----------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999 998 89999999988765544
Q ss_pred HHH
Q psy10680 489 QDL 491 (537)
Q Consensus 489 ~~~ 491 (537)
..+
T Consensus 513 ~~~ 515 (555)
T 3tbk_A 513 EKA 515 (555)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.5e-38 Score=347.63 Aligned_cols=349 Identities=19% Similarity=0.197 Sum_probs=245.1
Q ss_pred cCCcceeeehhhhhhcccccCCCCCCChhhhhhhhc-cccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 21 SGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPI-CLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~-~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
...|..+++++.+...+. ..||..|+++|.++++. +.++++++++||||||||++
T Consensus 7 ~~~~~~l~l~~~~~~~l~-~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~----------------------- 62 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIK-KRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLI----------------------- 62 (715)
T ss_dssp CCBGGGSSSCHHHHHHHH-TTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHH-----------------------
T ss_pred cCcHHHcCCCHHHHHHHH-hCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHH-----------------------
Confidence 356888889999999884 59999999999999999 78899999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
+.++++..+... +++++|++|+++|+.|+++.++.+ ...++++..++|+....... .
T Consensus 63 ------------~~l~il~~~~~~-------~~~il~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~---~ 119 (715)
T 2va8_A 63 ------------AEMGIISFLLKN-------GGKAIYVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW---L 119 (715)
T ss_dssp ------------HHHHHHHHHHHS-------CSEEEEECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG---G
T ss_pred ------------HHHHHHHHHHHC-------CCeEEEEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh---c
Confidence 778888776532 568999999999999999999644 44588899999887654432 2
Q ss_pred cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCch---hHHHHh
Q psy10680 180 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPG---RLIDFL 256 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~---~~~~~l 256 (537)
.+++|+|+||+++...+.+....++++++||+||+|++.+..++..+..++..++..+.+ ++|||+. .+..++
T Consensus 120 ~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii----~lSATl~n~~~~~~~l 195 (715)
T 2va8_A 120 KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLL----ALSATISNYKQIAKWL 195 (715)
T ss_dssp GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEE----EEESCCTTHHHHHHHH
T ss_pred CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcEE----EEcCCCCCHHHHHHHh
Confidence 378999999999999988877778999999999999998878888888888887755555 9999943 445555
Q ss_pred hhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehh-hhHHHHHHHHhhccccccceeeeecchh
Q psy10680 257 ESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFIS-ERRDTILHFLESGTTNVNRITYLVLDEA 335 (537)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (537)
........ . ...+...... ..... ........+..
T Consensus 196 ~~~~~~~~-~-------------------------------r~~~l~~~~~~~~~~~------------~~~~~~~~~~~ 231 (715)
T 2va8_A 196 GAEPVATN-W-------------------------------RPVPLIEGVIYPERKK------------KEYNVIFKDNT 231 (715)
T ss_dssp TCEEEECC-C-------------------------------CSSCEEEEEEEECSST------------TEEEEEETTSC
T ss_pred CCCccCCC-C-------------------------------CCCCceEEEEecCCcc------------cceeeecCcch
Confidence 32110000 0 0000000000 00000 00000000000
Q ss_pred hhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccc----------------
Q psy10680 336 DRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSS---------------- 399 (537)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~---------------- 399 (537)
...... .... ..........+...+|||.+...++.+ +..+...
T Consensus 232 ~~~~~~-~~~~------------------~~~~~~~~~~~~~~LVF~~s~~~~~~~-a~~L~~~~~~~~~~~~~~~~~~~ 291 (715)
T 2va8_A 232 TKKVHG-DDAI------------------IAYTLDSLSKNGQVLVFRNSRKMAEST-ALKIANYMNFVSLDENALSEILK 291 (715)
T ss_dssp EEEEES-SSHH------------------HHHHHHHHTTTCCEEEECSSHHHHHHH-HHHHHHTTTSSCCCHHHHHHHHH
T ss_pred hhhccc-chHH------------------HHHHHHHHhcCCCEEEEECCHHHHHHH-HHHHHHHHhhccCChHHHHHHHH
Confidence 000000 0000 000011112345566888877776665 3333221
Q ss_pred --------------------ccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE----ec---
Q psy10680 400 --------------------LYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN----YD--- 452 (537)
Q Consensus 400 --------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~----~d--- 452 (537)
...+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+ ||
T Consensus 292 ~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~ 371 (715)
T 2va8_A 292 QLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKI 371 (715)
T ss_dssp HHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC-------
T ss_pred HHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccC
Confidence 124677999999999999999999999999999999999999999999998 99
Q ss_pred ----CCCChhhhHhhhhcccCCCC--CceeEEEecCCC
Q psy10680 453 ----FPDNTENYVHRIGRTARSTK--TGISYTLFTPLN 484 (537)
Q Consensus 453 ----~p~s~~~~~Q~~GRagR~~~--~g~~~~l~~~~~ 484 (537)
.|.|..+|.||+|||||.|. .|.|++++.+.+
T Consensus 372 ~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 372 AGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp -------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred CCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 79999999999999999884 789999987765
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5.1e-38 Score=346.22 Aligned_cols=340 Identities=16% Similarity=0.161 Sum_probs=247.2
Q ss_pred CcceeeehhhhhhcccccCCCCCCChhhhhhhhc-cccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccc
Q psy10680 23 YINVLIASDVASRGLGKNSGYGKPTSIQAQSWPI-CLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESS 101 (537)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~-~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (537)
.|..+++++.+.+.+. ..||..|+++|.++++. +.++++++++||||||||++
T Consensus 2 ~f~~l~l~~~~~~~l~-~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~------------------------- 55 (720)
T 2zj8_A 2 RVDELRVDERIKSTLK-ERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLI------------------------- 55 (720)
T ss_dssp BGGGCCSCHHHHHHHH-HTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHH-------------------------
T ss_pred cHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHH-------------------------
Confidence 4677788999998884 59999999999999998 88999999999999999999
Q ss_pred cccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccC
Q psy10680 102 WWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRG 181 (537)
Q Consensus 102 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (537)
+.++++..+... +++++|++|+++|+.|+++.++.+. ..++++..++|+....... ..+
T Consensus 56 ----------~~l~il~~~~~~-------~~~~l~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~ 114 (720)
T 2zj8_A 56 ----------AEIAMVHRILTQ-------GGKAVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDEW---LGK 114 (720)
T ss_dssp ----------HHHHHHHHHHHH-------CSEEEEECSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCGG---GGG
T ss_pred ----------HHHHHHHHHHhC-------CCEEEEEcCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCccccc---cCC
Confidence 778888776532 5679999999999999999997553 4588999999987654432 247
Q ss_pred CcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCc---hhHHHHhhh
Q psy10680 182 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATP---GRLIDFLES 258 (537)
Q Consensus 182 ~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp---~~~~~~l~~ 258 (537)
++|+|+||+++...+.+....++++++||+||+|++.++.++..+..++..++. ..+..++|||+ ..+..++..
T Consensus 115 ~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~ii~lSATl~n~~~~~~~l~~ 191 (720)
T 2zj8_A 115 YDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG---KAQIIGLSATIGNPEELAEWLNA 191 (720)
T ss_dssp CSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT---TBEEEEEECCCSCHHHHHHHTTE
T ss_pred CCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc---CCeEEEEcCCcCCHHHHHHHhCC
Confidence 899999999999988887777899999999999999988899999998887763 23334899994 344444432
Q ss_pred CCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhh
Q psy10680 259 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRM 338 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (537)
...... ....+......... .. .......
T Consensus 192 ~~~~~~--------------------------------~rp~~l~~~~~~~~---------------~~--~~~~~~~-- 220 (720)
T 2zj8_A 192 ELIVSD--------------------------------WRPVKLRRGVFYQG---------------FV--TWEDGSI-- 220 (720)
T ss_dssp EEEECC--------------------------------CCSSEEEEEEEETT---------------EE--EETTSCE--
T ss_pred cccCCC--------------------------------CCCCcceEEEEeCC---------------ee--eccccch--
Confidence 100000 00000000000000 00 0000000
Q ss_pred hcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccc-------------------
Q psy10680 339 LDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSS------------------- 399 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~------------------- 399 (537)
..... ...........+...+|||.++..++.+ +..+...
T Consensus 221 ------------------~~~~~--~~~~~~~~~~~~~~~LVF~~sr~~~~~~-a~~L~~~~~~~~~~~~~~~~~~~~~~ 279 (720)
T 2zj8_A 221 ------------------DRFSS--WEELVYDAIRKKKGALIFVNMRRKAERV-ALELSKKVKSLLTKPEIRALNELADS 279 (720)
T ss_dssp ------------------EECSS--TTHHHHHHHHTTCCEEEECSCHHHHHHH-HHHHHHHHGGGSCHHHHHHHHHHHHT
T ss_pred ------------------hhhhH--HHHHHHHHHhCCCCEEEEecCHHHHHHH-HHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 00000 0000111123445666888887777665 4333321
Q ss_pred --------------ccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE----ec----CCCCh
Q psy10680 400 --------------LYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN----YD----FPDNT 457 (537)
Q Consensus 400 --------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~----~d----~p~s~ 457 (537)
...+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+.
T Consensus 280 i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~ 359 (720)
T 2zj8_A 280 LEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPI 359 (720)
T ss_dssp SCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCH
T ss_pred HhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCH
Confidence 123677999999999999999999999999999999999999999999998 76 58899
Q ss_pred hhhHhhhhcccCCC--CCceeEEEecCCC
Q psy10680 458 ENYVHRIGRTARST--KTGISYTLFTPLN 484 (537)
Q Consensus 458 ~~~~Q~~GRagR~~--~~g~~~~l~~~~~ 484 (537)
.+|.||+|||||.| ..|.|++++.+.+
T Consensus 360 ~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 360 IEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp HHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred HHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 99999999999988 4788999998876
No 24
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.6e-38 Score=348.21 Aligned_cols=406 Identities=15% Similarity=0.145 Sum_probs=201.2
Q ss_pred cCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHh
Q psy10680 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYH 119 (537)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 119 (537)
.+|+..|+++|.++++.++.|+++++++|||+|||++ |++|++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~-----------------------------------~~~~i~~~ 287 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFV-----------------------------------SILICEHH 287 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH-----------------------------------HHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHH-----------------------------------HHHHHHHH
Confidence 4678899999999999999999999999999999999 88888887
Q ss_pred hhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcC
Q psy10680 120 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESG 199 (537)
Q Consensus 120 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~ 199 (537)
+...+. ..++++|||+||++|+.|+.+.++.++...++++..++|+.....+...+..+++|+|+||+++.+.+...
T Consensus 288 l~~~~~---~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~ 364 (797)
T 4a2q_A 288 FQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG 364 (797)
T ss_dssp HHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS
T ss_pred HHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc
Confidence 765421 23667999999999999999999999888889999999999877777777778999999999999999887
Q ss_pred cc-cccceeEEEecchhhhhhCCChHHHH-HHHhhc-cccccccCCceeecCch------------hHHHHhhhCCc-cc
Q psy10680 200 TT-NVNRITYLVLDEADRMLDMGFEPQIR-KIIQMT-RTRDLCRGAEIVVATPG------------RLIDFLESGTT-NV 263 (537)
Q Consensus 200 ~~-~~~~l~liV~DE~h~~~~~~~~~~l~-~il~~~-~~~~~~~~~~~~saTp~------------~~~~~l~~~~~-~~ 263 (537)
.. .+.++++||+||||++...+....+. .++... .......+..++||||. .+......... .+
T Consensus 365 ~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i 444 (797)
T 4a2q_A 365 TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAI 444 (797)
T ss_dssp SCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEE
T ss_pred cccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEE
Confidence 77 78999999999999988754322222 222211 00011122338899973 22111111000 00
Q ss_pred cccee-------eeccchhhh------hcCCChHHHHHHHHhh----hcCCC-----cccceeehhhhHHHHHHHHhhc-
Q psy10680 264 NRITY-------LVLDEADRM------LDMGFEPQIRKIIQMT----RHAHP-----VVPVSLFISERRDTILHFLESG- 320 (537)
Q Consensus 264 ~~~~~-------~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~- 320 (537)
..... ......... ....+...+..+.... ..... ..+...+...........+...
T Consensus 445 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~ 524 (797)
T 4a2q_A 445 STVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKC 524 (797)
T ss_dssp ECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHH
T ss_pred ecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHH
Confidence 00000 000000000 0000000111110000 00000 0000000000000000000000
Q ss_pred ---------------------cccccc---------------eeeeecchhhhhhcCCChhHHHHH-----------hh-
Q psy10680 321 ---------------------TTNVNR---------------ITYLVLDEADRMLDMGFEPQIRKI-----------IQ- 352 (537)
Q Consensus 321 ---------------------~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~- 352 (537)
...... .......................+ ..
T Consensus 525 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 604 (797)
T 4a2q_A 525 RLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIAL 604 (797)
T ss_dssp HHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred HHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHh
Confidence 000000 000000000000000000000000 00
Q ss_pred -hccccceeechhhHHHHH---HhHhCceeEEEEeeccCccccccccccc------------cccccccccCCCCHHHHH
Q psy10680 353 -MTRFNTCVFLGYVLYFWF---ILVAGIERWVFMEINHNGTETKHYGVSS------------SLYRAMGIHGDKSQWNRD 416 (537)
Q Consensus 353 -~~~~~~~~~~~~~~~~~~---~~~~~~~~~if~~~~~~~~~l~~~~l~~------------~~~~~~~~~~~~~~~~r~ 416 (537)
............+...+. ....+.+.+|||.+...+..+ ...+.. .|.....+||+|+..+|.
T Consensus 605 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L-~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~ 683 (797)
T 4a2q_A 605 SKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSAL-KKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQK 683 (797)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHH-HHHHHTCSTTCSCCCEEC------------------
T ss_pred hcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHH-HHHHHhCcccccccceEEEecCCcccCCCCCHHHHH
Confidence 000001111222222222 224568899999999999888 666644 355666779999999999
Q ss_pred HHHHHHhc-CCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcc
Q psy10680 417 QTLRDFRS-GYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGN 486 (537)
Q Consensus 417 ~~~~~f~~-g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~ 486 (537)
.+++.|++ |+++|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. ..|.+++++.+.+..
T Consensus 684 ~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 684 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp ----------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred HHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999 999999999999999999999999999999999999999999 998 889999999876543
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-38 Score=356.93 Aligned_cols=375 Identities=13% Similarity=0.071 Sum_probs=238.0
Q ss_pred CcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccccc
Q psy10680 23 YINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSW 102 (537)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (537)
.+....+++.+...+.+.++| .|+++|.++++.+.+|++++++||||+|||++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f-~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlv-------------------------- 215 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVV-------------------------- 215 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSS-CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHH--------------------------
T ss_pred CcccCCCChhhhHHHHHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHH--------------------------
Confidence 344455555666666544444 89999999999999999999999999999999
Q ss_pred ccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCC
Q psy10680 103 WNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGA 182 (537)
Q Consensus 103 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (537)
|.+|++..+.. ++++||++||++|+.|+++.+...+. .+..++|+.... .++
T Consensus 216 ---------a~l~i~~~l~~--------g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~ 267 (1108)
T 3l9o_A 216 ---------AEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDA 267 (1108)
T ss_dssp ---------HHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSC
T ss_pred ---------HHHHHHHHHhc--------CCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCC
Confidence 77788777643 66799999999999999999998765 466677876633 468
Q ss_pred cEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecCc-h--hHHHHhhh
Q psy10680 183 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVATP-G--RLIDFLES 258 (537)
Q Consensus 183 ~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saTp-~--~~~~~l~~ 258 (537)
+|+|+||+.|.+.+......+.++++|||||||++.+++++..+..++..++. .+.+ ++|||. . .+..++..
T Consensus 268 ~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl----~lSATipn~~e~a~~l~~ 343 (1108)
T 3l9o_A 268 GCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYV----FLSATIPNAMEFAEWICK 343 (1108)
T ss_dssp SEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEE----EEECSCSSCHHHHHHHHH
T ss_pred CEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEE----EEcCCCCCHHHHHHHHHh
Confidence 99999999999999888888999999999999999988888889998888765 4444 899993 2 34455543
Q ss_pred CCcccccceeeeccch-----hhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecc
Q psy10680 259 GTTNVNRITYLVLDEA-----DRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLD 333 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (537)
..... ......+.. ..+..... ............................... .
T Consensus 344 ~~~~~--~~vi~~~~rp~pl~~~~~~~~~-------------~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~------~ 402 (1108)
T 3l9o_A 344 IHSQP--CHIVYTNFRPTPLQHYLFPAHG-------------DGIYLVVDEKSTFREENFQKAMASISNQIGD------D 402 (1108)
T ss_dssp HTCSC--EEEEEECCCSSCEEEEEEETTS-------------SCCEEEEETTTEECHHHHHHHHTTC-------------
T ss_pred hcCCC--eEEEecCCCcccceEEEeecCC-------------cceeeeeccccchhhhhHHHHHHHHHhhhcc------c
Confidence 11110 000000000 00000000 0000000000000000000000000000000 0
Q ss_pred hhhhhhcCCChhHHHHHhhhccccceeechhh--HHHHHHhHhCceeEEEEeeccCccccccccccccccc---------
Q psy10680 334 EADRMLDMGFEPQIRKIIQMTRFNTCVFLGYV--LYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYR--------- 402 (537)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~--------- 402 (537)
.... . ...................... +............+|||.+...++.+ +..+...++.
T Consensus 403 ~~~~----~-~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~l-a~~L~~~~~~~~~e~~~i~ 476 (1108)
T 3l9o_A 403 PNST----D-SRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL-ALKMSKLDFNSDDEKEALT 476 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHH-HHHTCSHHHHCC----CHH
T ss_pred cccc----c-cccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHH-HHHHHhccCCCHHHHHHHH
Confidence 0000 0 0000000000000000000001 11111122345778999999888877 5555543332
Q ss_pred ------------------------------cccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEec
Q psy10680 403 ------------------------------AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYD 452 (537)
Q Consensus 403 ------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d 452 (537)
+..+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+++
T Consensus 477 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~ 556 (1108)
T 3l9o_A 477 KIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV 556 (1108)
T ss_dssp HHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCS
T ss_pred HHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecC
Confidence 56799999999999999999999999999999999999999999999766
Q ss_pred C--------CCChhhhHhhhhcccCCC--CCceeEEEecCC
Q psy10680 453 F--------PDNTENYVHRIGRTARST--KTGISYTLFTPL 483 (537)
Q Consensus 453 ~--------p~s~~~~~Q~~GRagR~~--~~g~~~~l~~~~ 483 (537)
. |.|+.+|+||+|||||.| ..|.+++++.+.
T Consensus 557 ~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 557 RKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp EEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred cccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 5 347778999999999999 578888888775
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3.2e-38 Score=346.83 Aligned_cols=343 Identities=18% Similarity=0.192 Sum_probs=242.6
Q ss_pred cceee--ehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccc
Q psy10680 24 INVLI--ASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESS 101 (537)
Q Consensus 24 ~~~~~--~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (537)
|..+. +++.+.+.+ +..||+.|+++|.++++.+.++++++++||||||||++
T Consensus 3 f~~l~~~l~~~~~~~l-~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~------------------------- 56 (702)
T 2p6r_A 3 VEELAESISSYAVGIL-KEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLL------------------------- 56 (702)
T ss_dssp SHHHHHHHHHHHHHHH-HCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHH-------------------------
T ss_pred hhhhhhccCHHHHHHH-HhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHH-------------------------
Confidence 45555 788888888 45999999999999999999999999999999999999
Q ss_pred cccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccC
Q psy10680 102 WWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRG 181 (537)
Q Consensus 102 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (537)
+.++++..+.. +++++|++|+++|+.|+++.++.+ ...++++..++|+...... ...+
T Consensus 57 ----------~~l~il~~~~~--------~~~~l~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~ 114 (702)
T 2p6r_A 57 ----------AEMAMVREAIK--------GGKSLYVVPLRALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGD 114 (702)
T ss_dssp ----------HHHHHHHHHHT--------TCCEEEEESSHHHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTT
T ss_pred ----------HHHHHHHHHHh--------CCcEEEEeCcHHHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccC
Confidence 77888877653 456999999999999999999644 3458899999998765432 1247
Q ss_pred CcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCch---hHHHHhhh
Q psy10680 182 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPG---RLIDFLES 258 (537)
Q Consensus 182 ~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~---~~~~~l~~ 258 (537)
++|+|+||+++...+.+....++++++||+||+|++.+++++..+..++..++......+..++|||+. .+..++..
T Consensus 115 ~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~ 194 (702)
T 2p6r_A 115 CDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDA 194 (702)
T ss_dssp CSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTC
T ss_pred CCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhCC
Confidence 899999999999998887777899999999999999988888888888777643222233448999943 33333321
Q ss_pred CCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhh
Q psy10680 259 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRM 338 (537)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (537)
.... . .....+........ .... ..+....
T Consensus 195 ~~~~----------~----------------------~~r~~~l~~~~~~~---------------~~~~--~~~~~~~- 224 (702)
T 2p6r_A 195 DYYV----------S----------------------DWRPVPLVEGVLCE---------------GTLE--LFDGAFS- 224 (702)
T ss_dssp EEEE----------C----------------------CCCSSCEEEEEECS---------------SEEE--EEETTEE-
T ss_pred Cccc----------C----------------------CCCCccceEEEeeC---------------Ceee--ccCcchh-
Confidence 0000 0 00000000000000 0000 0000000
Q ss_pred hcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccc-------------------
Q psy10680 339 LDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSS------------------- 399 (537)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~------------------- 399 (537)
........-........+...+|||.+...++.+ +..+...
T Consensus 225 -------------------~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~-a~~L~~~~~~~~~~~~~~~~i~~~~~ 284 (702)
T 2p6r_A 225 -------------------TSRRVKFEELVEECVAENGGVLVFESTRRGAEKT-AVKLSAITAKYVENEGLEKAILEENE 284 (702)
T ss_dssp -------------------EEEECCHHHHHHHHHHTTCCEEEECSSHHHHHHH-HHHHHHHHHTTCCCSSHHHHHHTTCC
T ss_pred -------------------hhhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHH-HHHHHHHHHhhcChHHHHHHHHhhcc
Confidence 0000000000111123456677999888877766 4433321
Q ss_pred -----------ccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE----ec---CCCChhhhH
Q psy10680 400 -----------LYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN----YD---FPDNTENYV 461 (537)
Q Consensus 400 -----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~----~d---~p~s~~~~~ 461 (537)
+..+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|.
T Consensus 285 ~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~ 364 (702)
T 2p6r_A 285 GEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYK 364 (702)
T ss_dssp SHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHH
T ss_pred ccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHH
Confidence 234677999999999999999999999999999999999999999999998 66 688999999
Q ss_pred hhhhcccCCC--CCceeEEEecCCC
Q psy10680 462 HRIGRTARST--KTGISYTLFTPLN 484 (537)
Q Consensus 462 Q~~GRagR~~--~~g~~~~l~~~~~ 484 (537)
||+|||||.| ..|.|++++.+.+
T Consensus 365 Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 365 QMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HHhhhcCCCCCCCCceEEEEecCcc
Confidence 9999999988 4789999988866
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-37 Score=343.25 Aligned_cols=357 Identities=14% Similarity=0.081 Sum_probs=233.3
Q ss_pred cccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHh
Q psy10680 38 GKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPAL 117 (537)
Q Consensus 38 ~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 117 (537)
.+.++| .|+++|.++++.+.+|+++++++|||+|||++ |.++++
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlv-----------------------------------a~lai~ 123 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVV-----------------------------------AEYAIA 123 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHH-----------------------------------HHHHHH
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHH-----------------------------------HHHHHH
Confidence 355778 59999999999999999999999999999999 777777
Q ss_pred HhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHh
Q psy10680 118 YHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLE 197 (537)
Q Consensus 118 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~ 197 (537)
..+.. ++++||++|+++|+.|+++.+...+. ++..++|+.... .+++|+|+||+.|.+.+.
T Consensus 124 ~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~ 184 (1010)
T 2xgj_A 124 QSLKN--------KQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLY 184 (1010)
T ss_dssp HHHHT--------TCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHH
T ss_pred HHhcc--------CCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHH
Confidence 66532 56799999999999999999998765 567788876643 367999999999999998
Q ss_pred cCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecCchh---HHHHhhhCCcccccceeeeccc
Q psy10680 198 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVATPGR---LIDFLESGTTNVNRITYLVLDE 273 (537)
Q Consensus 198 ~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saTp~~---~~~~l~~~~~~~~~~~~~~~~~ 273 (537)
+....+.++++|||||||++.+..++..+..++..++. .+.+ ++|||++. +..++...... .......+.
T Consensus 185 ~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il----~LSATi~n~~e~a~~l~~~~~~--~~~vi~~~~ 258 (1010)
T 2xgj_A 185 RGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYV----FLSATIPNAMEFAEWICKIHSQ--PCHIVYTNF 258 (1010)
T ss_dssp HTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEE----EEECCCTTHHHHHHHHHHHHTS--CEEEEEECC
T ss_pred cCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEE----EEcCCCCCHHHHHHHHHhhcCC--CeEEEecCC
Confidence 88888999999999999999999899999888887764 4444 89999433 33444321000 000000000
Q ss_pred h-----hhhhcCCChHHHHHHHHhhhcCCCccc-ceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHH
Q psy10680 274 A-----DRMLDMGFEPQIRKIIQMTRHAHPVVP-VSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQI 347 (537)
Q Consensus 274 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (537)
. ..+...+. ........ ...+...........+....... .. . ..+..
T Consensus 259 rp~pl~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~----~---------~~~~g 312 (1010)
T 2xgj_A 259 RPTPLQHYLFPAHG-----------DGIYLVVDEKSTFREENFQKAMASISNQIGDD--PN----S---------TDSRG 312 (1010)
T ss_dssp CSSCEEEEEEETTS-----------SCCEEEECTTCCBCHHHHHHHHHTCC-----------------------------
T ss_pred CcccceEEEEecCC-----------cceeeeeccccccchHHHHHHHHHHhhhhccc--cc----c---------ccccc
Confidence 0 00000000 00000000 00000000000000000000000 00 0 00000
Q ss_pred HHH-h-hhccccc--eeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccccc----------------------
Q psy10680 348 RKI-I-QMTRFNT--CVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLY---------------------- 401 (537)
Q Consensus 348 ~~~-~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~---------------------- 401 (537)
... . ....... ..... .+..........+.+|||.++..++.+ +..+...++
T Consensus 313 ~~~~~~k~~~~~~~~~~~l~-~l~~~l~~~~~~~~IVF~~sr~~~e~l-a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~ 390 (1010)
T 2xgj_A 313 KKGQTYKGGSAKGDAKGDIY-KIVKMIWKKKYNPVIVFSFSKRDCEEL-ALKMSKLDFNSDDEKEALTKIFNNAIALLPE 390 (1010)
T ss_dssp ----------------CHHH-HHHHHHHHHTCCSEEEEESSHHHHHHH-HHTTTTSCCCCHHHHHHHHHHHHHHHTTSCG
T ss_pred ccccccccccccccchHHHH-HHHHHHHhcCCCCEEEEECCHHHHHHH-HHHHHhCCCCChHHHHHHHHHHHHHHHhcch
Confidence 000 0 0000000 00000 111111222344788999999888877 555544322
Q ss_pred -----------------ccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE----ecC----CCC
Q psy10680 402 -----------------RAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN----YDF----PDN 456 (537)
Q Consensus 402 -----------------~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~----~d~----p~s 456 (537)
.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ ||. |.+
T Consensus 391 ~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s 470 (1010)
T 2xgj_A 391 TDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVS 470 (1010)
T ss_dssp GGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECC
T ss_pred hhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCC
Confidence 2556899999999999999999999999999999999999999999999 998 889
Q ss_pred hhhhHhhhhcccCCCC--CceeEEEecCC
Q psy10680 457 TENYVHRIGRTARSTK--TGISYTLFTPL 483 (537)
Q Consensus 457 ~~~~~Q~~GRagR~~~--~g~~~~l~~~~ 483 (537)
+.+|+||+|||||.|. .|.+++++.+.
T Consensus 471 ~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 471 GGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp HHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred HHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9999999999999997 59999999865
No 28
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=343.66 Aligned_cols=398 Identities=18% Similarity=0.221 Sum_probs=222.3
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.|+++|.++++.+++|+++++++|||+|||++ |++|++..+....
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~-----------------------------------~~~~i~~~l~~~~ 51 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRV-----------------------------------AVYIAKDHLDKKK 51 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHH-----------------------------------HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHH-----------------------------------HHHHHHHHHHhcc
Confidence 89999999999999999999999999999999 7788777665431
Q ss_pred CCCCCCCceEEEEcccHHHHHHH-HHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHH------h
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQI-QAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFL------E 197 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l------~ 197 (537)
. .+.++++|||+|+++|+.|+ .+.++.++.. ++++..++|+.........+..+++|+|+||+.|.+.+ .
T Consensus 52 ~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~ 128 (699)
T 4gl2_A 52 K--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGE 128 (699)
T ss_dssp H--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC------
T ss_pred c--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhcccccc
Confidence 1 11236699999999999999 9999988765 48889999998877666666678999999999999988 4
Q ss_pred cCcccccceeEEEecchhhhhhCCC-hHHHHHHHhhc-cccc---------cccCCceeecCchh--------HHHHhh-
Q psy10680 198 SGTTNVNRITYLVLDEADRMLDMGF-EPQIRKIIQMT-RTRD---------LCRGAEIVVATPGR--------LIDFLE- 257 (537)
Q Consensus 198 ~~~~~~~~l~liV~DE~h~~~~~~~-~~~l~~il~~~-~~~~---------~~~~~~~~saTp~~--------~~~~l~- 257 (537)
.....+.++++|||||||++..... ...+..++... .... ......++||||.. ....+.
T Consensus 129 ~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~ 208 (699)
T 4gl2_A 129 DAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILK 208 (699)
T ss_dssp --CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHH
T ss_pred ccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHH
Confidence 4456789999999999999865433 33333333221 0000 11233488999764 111111
Q ss_pred ---hCCc-cccccee-------------eeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHH-HHH----
Q psy10680 258 ---SGTT-NVNRITY-------------LVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDT-ILH---- 315 (537)
Q Consensus 258 ---~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---- 315 (537)
.... .+..... .............+...+..+...........+...+....... +..
T Consensus 209 l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~ 288 (699)
T 4gl2_A 209 LCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKK 288 (699)
T ss_dssp HHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHH
T ss_pred HHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHH
Confidence 1000 0000000 00000000000001111111111110000000000000000000 000
Q ss_pred ------------------------HHhhccc--cccceeeee--------------------cchhhhhhcCCChh---H
Q psy10680 316 ------------------------FLESGTT--NVNRITYLV--------------------LDEADRMLDMGFEP---Q 346 (537)
Q Consensus 316 ------------------------~~~~~~~--~~~~~~~~~--------------------~~~~~~~~~~~~~~---~ 346 (537)
....... ....+.... .............. .
T Consensus 289 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 368 (699)
T 4gl2_A 289 AAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKM 368 (699)
T ss_dssp HHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHH
Confidence 0000000 000000000 00000000000000 0
Q ss_pred HHHHhhhccccceeechhhHHHH---HHhHh-CceeEEEEeeccCcccccccccccc------ccccccccCC-------
Q psy10680 347 IRKIIQMTRFNTCVFLGYVLYFW---FILVA-GIERWVFMEINHNGTETKHYGVSSS------LYRAMGIHGD------- 409 (537)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~if~~~~~~~~~l~~~~l~~~------~~~~~~~~~~------- 409 (537)
...+. ............+...+ +.... +.+.+|||.+...++.+ ...|... |+++..+||+
T Consensus 369 l~~~~-~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l-~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~ 446 (699)
T 4gl2_A 369 LKRLA-ENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYAL-SQWITENEKFAEVGVKAHHLIGAGHSSEFK 446 (699)
T ss_dssp HHHHH-TCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHH-HHHHHSSCSCC-----CEECCCSCCCTTCC
T ss_pred HHHHh-hcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHH-HHHHHhCccccccCcceEEEECCCCccCCC
Confidence 00000 00000111122222222 22223 78899999999999998 7777665 8999999999
Q ss_pred -CCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 410 -KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 410 -~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
|+..+|.++++.|++|+.+|||||+++++|||+|++++||+||+|+|+..|+||+|||||.| +.++++....+
T Consensus 447 ~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~ 520 (699)
T 4gl2_A 447 PMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGS 520 (699)
T ss_dssp CCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSS
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999987654 34444444333
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.1e-37 Score=350.76 Aligned_cols=328 Identities=19% Similarity=0.211 Sum_probs=234.2
Q ss_pred cccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhh
Q psy10680 36 GLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILP 115 (537)
Q Consensus 36 ~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (537)
.+.+.+|| .|+++|.++++.+++|++++++||||||||++ |+++
T Consensus 70 ~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~-----------------------------------~l~~ 113 (1104)
T 4ddu_A 70 FFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTF-----------------------------------GMMT 113 (1104)
T ss_dssp HHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHH-----------------------------------HHHH
T ss_pred HHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHH-----------------------------------HHHH
Confidence 33345788 79999999999999999999999999999998 7777
Q ss_pred HhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcch---hHhHHHhccC-CcEEEeCCch
Q psy10680 116 ALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK---MYQTRDLCRG-AEIVVATPGR 191 (537)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~-~~Ivv~Tp~~ 191 (537)
++..+. .++++|||+||++|+.|+.+.++.+. ..++++..++|+.+. ..+...+..+ ++|+|+||++
T Consensus 114 il~~~~--------~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~r 184 (1104)
T 4ddu_A 114 ALWLAR--------KGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQF 184 (1104)
T ss_dssp HHHHHT--------TTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHH
T ss_pred HHHHHh--------cCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHH
Confidence 766652 26779999999999999999999976 678899999999887 4555556554 9999999999
Q ss_pred hHHHHhcCcccccceeEEEecchhhhhh-----------CCChHH-HHHHHhhccc--------cccccCCceeecC--c
Q psy10680 192 LIDFLESGTTNVNRITYLVLDEADRMLD-----------MGFEPQ-IRKIIQMTRT--------RDLCRGAEIVVAT--P 249 (537)
Q Consensus 192 l~~~l~~~~~~~~~l~liV~DE~h~~~~-----------~~~~~~-l~~il~~~~~--------~~~~~~~~~~saT--p 249 (537)
|.+.+.. ..+.++++||+||||++.. .+|... +..++..++. .....+..++||| |
T Consensus 185 L~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p 262 (1104)
T 4ddu_A 185 VSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKP 262 (1104)
T ss_dssp HHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCC
T ss_pred HHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCc
Confidence 9887764 5678899999999987654 667777 7788877650 0012233488999 3
Q ss_pred hhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceee
Q psy10680 250 GRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITY 329 (537)
Q Consensus 250 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (537)
..+...+......+. .. . .......+..
T Consensus 263 ~~~~~~~~~~~l~i~-------------------------------v~-~--------------------~~~~~~~i~~ 290 (1104)
T 4ddu_A 263 RGIRPLLFRDLLNFT-------------------------------VG-R--------------------LVSVARNITH 290 (1104)
T ss_dssp CSSTTHHHHHHTCCC-------------------------------CC-B--------------------CCCCCCCEEE
T ss_pred HHHHHHHhhcceeEE-------------------------------ec-c--------------------CCCCcCCcee
Confidence 211100000000000 00 0 0000000000
Q ss_pred eecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccc-cccC
Q psy10680 330 LVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAM-GIHG 408 (537)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 408 (537)
.... +.....+...+. ..+.+.+|||.+...+..+ ...|...|+.+. .+||
T Consensus 291 ~~~~-------------------------~~k~~~L~~ll~--~~~~~~LVF~~s~~~a~~l-~~~L~~~g~~~~~~lhg 342 (1104)
T 4ddu_A 291 VRIS-------------------------SRSKEKLVELLE--IFRDGILIFAQTEEEGKEL-YEYLKRFKFNVGETWSE 342 (1104)
T ss_dssp EEES-------------------------CCCHHHHHHHHH--HHCSSEEEEESSSHHHHHH-HHHHHHTTCCEEESSSS
T ss_pred EEEe-------------------------cCHHHHHHHHHH--hcCCCEEEEECcHHHHHHH-HHHHHhCCCCeeeEecC
Confidence 0000 000000111111 1235667999999999998 888888899998 9999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEE----ecccccCCCcCC-ccEEEEecCCC----------------------------
Q psy10680 409 DKSQWNRDQTLRDFRSGYINVLIA----SDVASRGLDVED-IKYVVNYDFPD---------------------------- 455 (537)
Q Consensus 409 ~~~~~~r~~~~~~f~~g~~~iLva----T~~l~~Gidi~~-~~~Vi~~d~p~---------------------------- 455 (537)
+|.+ ++.|++|+.+|||| |+++++|+|+|+ +++||+||.|.
T Consensus 343 -----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~ 416 (1104)
T 4ddu_A 343 -----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQ 416 (1104)
T ss_dssp -----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSC
T ss_pred -----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHH
Confidence 3556 99999999999999 999999999999 99999999998
Q ss_pred --------------------------------------------ChhhhHhhhhcccCCCCCc--eeEEEecCCCcchHH
Q psy10680 456 --------------------------------------------NTENYVHRIGRTARSTKTG--ISYTLFTPLNGNKAQ 489 (537)
Q Consensus 456 --------------------------------------------s~~~~~Q~~GRagR~~~~g--~~~~l~~~~~~~~~~ 489 (537)
++.+|+||+||+||.|..| .++.++..+|...+.
T Consensus 417 ~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~ 496 (1104)
T 4ddu_A 417 ENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFE 496 (1104)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHH
Confidence 7789999999999976543 344444447777777
Q ss_pred HHHHHHH
Q psy10680 490 DLIDILN 496 (537)
Q Consensus 490 ~~~~~l~ 496 (537)
.+.+.++
T Consensus 497 ~l~~~~~ 503 (1104)
T 4ddu_A 497 SLKTRLL 503 (1104)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777775
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=8.8e-37 Score=343.20 Aligned_cols=402 Identities=15% Similarity=0.159 Sum_probs=199.4
Q ss_pred cCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHh
Q psy10680 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYH 119 (537)
Q Consensus 40 ~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 119 (537)
..|+..|+++|.++++.++.|+++++++|||+|||++ |++|++..
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~-----------------------------------~~~~i~~~ 287 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFV-----------------------------------SILICEHH 287 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH-----------------------------------HHHHHHTT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHH-----------------------------------HHHHHHHH
Confidence 3467799999999999999999999999999999999 77887777
Q ss_pred hhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcC
Q psy10680 120 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESG 199 (537)
Q Consensus 120 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~ 199 (537)
+...+. +.++++|||+||++|+.|+.+.++.++...++++..++|+.....+...+..+++|+|+||++|.+.+...
T Consensus 288 l~~~~~---~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~ 364 (936)
T 4a2w_A 288 FQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG 364 (936)
T ss_dssp TTTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS
T ss_pred HHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC
Confidence 654321 22567999999999999999999999887789999999998777666666678999999999999999877
Q ss_pred cc-cccceeEEEecchhhhhhCCChHHHH-HHHhhc-cccccccCCceeecCch------------hHHH---HhhhCCc
Q psy10680 200 TT-NVNRITYLVLDEADRMLDMGFEPQIR-KIIQMT-RTRDLCRGAEIVVATPG------------RLID---FLESGTT 261 (537)
Q Consensus 200 ~~-~~~~l~liV~DE~h~~~~~~~~~~l~-~il~~~-~~~~~~~~~~~~saTp~------------~~~~---~l~~~~~ 261 (537)
.. .+.++++||+||||++...+....+. .++... .......+..++||||. .+.. .+.....
T Consensus 365 ~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i 444 (936)
T 4a2w_A 365 TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAI 444 (936)
T ss_dssp SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEE
T ss_pred ccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCcee
Confidence 76 78999999999999988764222221 222211 00011123348899982 1111 1111000
Q ss_pred ccc--------------cceeeeccchhhhhcCCChHHHHHHHHh---hhcCC------CcccceeehhhhHHHHHHHHh
Q psy10680 262 NVN--------------RITYLVLDEADRMLDMGFEPQIRKIIQM---TRHAH------PVVPVSLFISERRDTILHFLE 318 (537)
Q Consensus 262 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~ 318 (537)
... .......+. -....+...+..+... ..... ...+...+...........+.
T Consensus 445 ~~~~~~~~~l~~~~~~p~~~~~~~~~---~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~ 521 (936)
T 4a2w_A 445 STVRENIQELQRFMNKPEIDVRLVKR---RIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQ 521 (936)
T ss_dssp ECCCSSHHHHHHHSCCCCEEEEECCC---CSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHH
T ss_pred ecccccHHHHHHhccCCcceEEeccc---ccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHH
Confidence 000 000000000 0000000011111000 00000 000000000000000000000
Q ss_pred hc----------------------cccc---c------------ceeeeecchhhhhhcCCChhHHHH-----------H
Q psy10680 319 SG----------------------TTNV---N------------RITYLVLDEADRMLDMGFEPQIRK-----------I 350 (537)
Q Consensus 319 ~~----------------------~~~~---~------------~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 350 (537)
.. .... + ...................+.... +
T Consensus 522 k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l 601 (936)
T 4a2w_A 522 RKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPEL 601 (936)
T ss_dssp HHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 00 0000 0 000000000000000000000000 0
Q ss_pred hhh--ccccceeechhhHHHHHHh---HhCceeEEEEeeccCcccccccccccc------------ccccccccCCCCHH
Q psy10680 351 IQM--TRFNTCVFLGYVLYFWFIL---VAGIERWVFMEINHNGTETKHYGVSSS------------LYRAMGIHGDKSQW 413 (537)
Q Consensus 351 ~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~if~~~~~~~~~l~~~~l~~~------------~~~~~~~~~~~~~~ 413 (537)
... ...........+...+... ..+.+.+|||.+...+..+ ...|... |.....+||+|+..
T Consensus 602 ~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L-~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~ 680 (936)
T 4a2w_A 602 IALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSAL-KKCMEENPILNYIKPGVLMGRGRRDQTTGMTLP 680 (936)
T ss_dssp HHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHH-HHHHHHCSTTSSCCCEEC---------------
T ss_pred HHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHH-HHHHhhCccccccceeEEecCCCcccCCCCCHH
Confidence 000 0000111112222222221 3467899999999999888 6666654 55566679999999
Q ss_pred HHHHHHHHHhc-CCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCc
Q psy10680 414 NRDQTLRDFRS-GYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNG 485 (537)
Q Consensus 414 ~r~~~~~~f~~-g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~ 485 (537)
+|.++++.|++ |+++|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. ..|.+++++...+.
T Consensus 681 eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 681 SQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 751 (936)
T ss_dssp -------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHH
T ss_pred HHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCH
Confidence 99999999999 999999999999999999999999999999999999999999 998 78899989877543
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.4e-36 Score=318.00 Aligned_cols=387 Identities=19% Similarity=0.236 Sum_probs=236.8
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.|+++|.++++.+..+ ++++++|||+|||++ ++++++..+..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~-----------------------------------~~~~~~~~~~~-- 50 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLI-----------------------------------AMMIAEYRLTK-- 50 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHH-----------------------------------HHHHHHHHHHH--
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHH-----------------------------------HHHHHHHHHhc--
Confidence 7999999999999998 999999999999999 77777666542
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCccccc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVN 204 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~ 204 (537)
.++++||++|+++|+.|+.+++..+....+.++..++|+....... ....+++|+|+||+.+.+.+......+.
T Consensus 51 -----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~ 124 (494)
T 1wp9_A 51 -----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLE 124 (494)
T ss_dssp -----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTT
T ss_pred -----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchh
Confidence 1566999999999999999999988754455788888887655432 3334689999999999999888778889
Q ss_pred ceeEEEecchhhhhhCCChHHHHHHHhh-ccccccccCCceeecCch----hHHHHhhhCCcccccceeeeccc--hhhh
Q psy10680 205 RITYLVLDEADRMLDMGFEPQIRKIIQM-TRTRDLCRGAEIVVATPG----RLIDFLESGTTNVNRITYLVLDE--ADRM 277 (537)
Q Consensus 205 ~l~liV~DE~h~~~~~~~~~~l~~il~~-~~~~~~~~~~~~~saTp~----~~~~~l~~~~~~~~~~~~~~~~~--~~~~ 277 (537)
++++||+||||++.+......+...+.. .+..... ++||||. .+...+....... ........ ....
T Consensus 125 ~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l----~lTaTp~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~ 198 (494)
T 1wp9_A 125 DVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI----GLTASPGSTPEKIMEVINNLGIEH--IEYRSENSPDVRPY 198 (494)
T ss_dssp SCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE----EEESCSCSSHHHHHHHHHHTTCCE--EEECCTTSTTTGGG
T ss_pred hceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEE----EEecCCCCCcHHHHHHHHhcChhe--eeccCCCcHHHHHh
Confidence 9999999999999865433334333332 2223344 8899974 2333333211100 00000000 0000
Q ss_pred --------hcCCChHHHHHHH-----------HhhhcCCCcccceeeh-hhh----HHHHHHHHhhccccccc-------
Q psy10680 278 --------LDMGFEPQIRKII-----------QMTRHAHPVVPVSLFI-SER----RDTILHFLESGTTNVNR------- 326 (537)
Q Consensus 278 --------~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~------- 326 (537)
......+....+. ..........+..... ... ...+...+.........
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (494)
T 1wp9_A 199 VKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAM 278 (494)
T ss_dssp CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHH
T ss_pred cCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHH
Confidence 0000001111000 0000000000000000 000 00000000000000000
Q ss_pred ------------------eeeeec-----------chhhhhhcCCChhHHHHHhhhc-----cccceeechhhHHHHHHh
Q psy10680 327 ------------------ITYLVL-----------DEADRMLDMGFEPQIRKIIQMT-----RFNTCVFLGYVLYFWFIL 372 (537)
Q Consensus 327 ------------------~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 372 (537)
...... ........ .+......... ..........+...+...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 355 (494)
T 1wp9_A 279 ALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS---DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQ 355 (494)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT---SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhh---hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 000000 00000000 00000000000 001111222222222222
Q ss_pred ---HhCceeEEEEeeccCccccccccccccccccccccC--------CCCHHHHHHHHHHHhcCCCcEEEEecccccCCC
Q psy10680 373 ---VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHG--------DKSQWNRDQTLRDFRSGYINVLIASDVASRGLD 441 (537)
Q Consensus 373 ---~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~--------~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gid 441 (537)
..+.+.+|||.....+..+ ...+...++.+..+|| +|+..+|.++++.|++|+.+|||||+++++|+|
T Consensus 356 ~~~~~~~k~lVF~~~~~~~~~l-~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gld 434 (494)
T 1wp9_A 356 LQRKQNSKIIVFTNYRETAKKI-VNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLD 434 (494)
T ss_dssp HHHCTTCCEEEECSCHHHHHHH-HHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGG
T ss_pred hccCCCCeEEEEEccHHHHHHH-HHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCC
Confidence 4678899999999999988 8888888999999999 999999999999999999999999999999999
Q ss_pred cCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcc
Q psy10680 442 VEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGN 486 (537)
Q Consensus 442 i~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~ 486 (537)
+|++++||++|+|+++..|.||+||+||.|+ |.++.++.+.+.+
T Consensus 435 l~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 435 VPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp STTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred chhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999998 9999999886543
No 32
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.3e-36 Score=350.63 Aligned_cols=396 Identities=17% Similarity=0.142 Sum_probs=244.4
Q ss_pred eeeEEEEeeeecccceecCCcceeeeh----hhhhhcccccCCCCCCChhhhhhhhcccc-CCcEEEEccCCCccccccc
Q psy10680 4 SVSVRLVSLEARLPYFRSGYINVLIAS----DVASRGLGKNSGYGKPTSIQAQSWPICLS-GRDLIGIAQTGSGKTLSLT 78 (537)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~-~~~vli~apTGsGKT~~~~ 78 (537)
+|+++.+.+|++.|.++...--+..+. +.....+. ..+|+.++|+|.++++.++. ++|++++||||||||++
T Consensus 882 ~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~-~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTli-- 958 (1724)
T 4f92_B 882 PVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLY-QDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTIC-- 958 (1724)
T ss_dssp EEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTT-TTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHH--
T ss_pred eeccccccCCCCCCCCCccccCCCCCcccccCHHHHHHH-HhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHH--
Confidence 577778888888876555433332222 23334553 46799999999999999864 56899999999999999
Q ss_pred cccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHH-hccc
Q psy10680 79 IENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISI-FSRT 157 (537)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~ 157 (537)
+.+|++..+...+ ++++||++|+++|+.|.++.++. +...
T Consensus 959 ---------------------------------aelail~~l~~~~------~~kavyi~P~raLa~q~~~~~~~~f~~~ 999 (1724)
T 4f92_B 959 ---------------------------------AEFAILRMLLQSS------EGRCVYITPMEALAEQVYMDWYEKFQDR 999 (1724)
T ss_dssp ---------------------------------HHHHHHHHHHHCT------TCCEEEECSCHHHHHHHHHHHHHHHTTT
T ss_pred ---------------------------------HHHHHHHHHHhCC------CCEEEEEcChHHHHHHHHHHHHHHhchh
Confidence 8888888887543 56799999999999999998875 5556
Q ss_pred ceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcC--cccccceeEEEecchhhhhhCCChHHHHHHHhhccc
Q psy10680 158 MRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESG--TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT 235 (537)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~ 235 (537)
.++++..++|+...+.. ...+++|+||||+++..++.+. ...++++++||+||+|.+.+ ..+..+..++..+..
T Consensus 1000 ~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~ 1075 (1724)
T 4f92_B 1000 LNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRY 1075 (1724)
T ss_dssp SCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHH
Confidence 78999999998664433 2346899999999998877653 33578999999999998876 477777777655432
Q ss_pred ----cccccCCceeecC---chhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeeh-h
Q psy10680 236 ----RDLCRGAEIVVAT---PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFI-S 307 (537)
Q Consensus 236 ----~~~~~~~~~~saT---p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 307 (537)
.....+...+||| +..+.+|+........ .+....+.. . .......+. .
T Consensus 1076 i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~-----~~~~~~RPv--p----------------L~~~i~~~~~~ 1132 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTF-----NFHPNVRPV--P----------------LELHIQGFNIS 1132 (1724)
T ss_dssp HHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEE-----ECCGGGCSS--C----------------EEEEEEEECCC
T ss_pred HHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeE-----EeCCCCCCC--C----------------eEEEEEeccCC
Confidence 1112233488999 4666777754221110 000000000 0 000000000 0
Q ss_pred h-------hHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEE
Q psy10680 308 E-------RRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWV 380 (537)
Q Consensus 308 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 380 (537)
. ..+.....+...... ...+++......|...+..+............++
T Consensus 1133 ~~~~~~~~~~~~~~~~i~~~~~~-----------------------~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~ 1189 (1724)
T 4f92_B 1133 HTQTRLLSMAKPVYHAITKHSPK-----------------------KPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFL 1189 (1724)
T ss_dssp SHHHHHHTTHHHHHHHHHHHCSS-----------------------SCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTB
T ss_pred CchhhhhhhcchHHHHHHHhcCC-----------------------CCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhh
Confidence 0 000000000000000 0001111111111111111111111111111111
Q ss_pred EEeeccCcccc---ccccc-cccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE----ec
Q psy10680 381 FMEINHNGTET---KHYGV-SSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN----YD 452 (537)
Q Consensus 381 f~~~~~~~~~l---~~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~----~d 452 (537)
.+........+ ....+ ......+..+||+|+..+|..+++.|++|.++|||||+++++|||+|+..+||. ||
T Consensus 1190 ~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~d 1269 (1724)
T 4f92_B 1190 HCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYN 1269 (1724)
T ss_dssp CSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEE
T ss_pred cccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCcccc
Confidence 11111000000 00000 111234566899999999999999999999999999999999999999988883 33
Q ss_pred ------CCCChhhhHhhhhcccCCCC--CceeEEEecCCCcchHHHH
Q psy10680 453 ------FPDNTENYVHRIGRTARSTK--TGISYTLFTPLNGNKAQDL 491 (537)
Q Consensus 453 ------~p~s~~~~~Q~~GRagR~~~--~g~~~~l~~~~~~~~~~~~ 491 (537)
.|.+..+|+||+|||||.|. .|.+++++.+.+...+..+
T Consensus 1270 g~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1270 GKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp TTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred CcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 35689999999999999987 6899999988776655444
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.6e-36 Score=340.04 Aligned_cols=330 Identities=17% Similarity=0.187 Sum_probs=232.8
Q ss_pred hhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccc
Q psy10680 33 ASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKY 112 (537)
Q Consensus 33 ~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (537)
....+.+.+||. | ++|.++|+.+++|+|++++||||||||+ |
T Consensus 46 ~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl------------------------------------~ 87 (1054)
T 1gku_B 46 FVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS------------------------------------F 87 (1054)
T ss_dssp HHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH------------------------------------H
T ss_pred HHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH------------------------------------H
Confidence 445565679998 9 9999999999999999999999999996 3
Q ss_pred hhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhccccee----eEEEEEcCcchhHh---HHHhccCCcEE
Q psy10680 113 ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRI----RHACLYGGTSKMYQ---TRDLCRGAEIV 185 (537)
Q Consensus 113 ~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~l~~~~~Iv 185 (537)
.+|++..+... ++++||++||++|+.|+.+.++.++...++ ++..++|+.....+ ...+.. ++|+
T Consensus 88 ~lp~l~~~~~~-------~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~Il 159 (1054)
T 1gku_B 88 GLAMSLFLALK-------GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIV 159 (1054)
T ss_dssp HHHHHHHHHTT-------SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEE
T ss_pred HHHHHHHHhhc-------CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEE
Confidence 55666655432 567999999999999999999999888888 89999999887663 333445 9999
Q ss_pred EeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc--------cccccCCceeecCchhHHHHhh
Q psy10680 186 VATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT--------RDLCRGAEIVVATPGRLIDFLE 257 (537)
Q Consensus 186 v~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~--------~~~~~~~~~~saTp~~~~~~l~ 257 (537)
|+||++|.+.+.+ +.++++||+||||++.+ ++..+..++..+.. .....+..++|||.........
T Consensus 160 V~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~ 233 (1054)
T 1gku_B 160 ITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKA 233 (1054)
T ss_dssp EEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTH
T ss_pred EEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHH
Confidence 9999999987765 66899999999999998 56777777766532 1122345588888321010000
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADR 337 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (537)
.............. ......+......
T Consensus 234 ---------------------------~~~~~~~~i~v~~~----------------------~~~~~~i~~~~~~---- 260 (1054)
T 1gku_B 234 ---------------------------ELFRQLLNFDIGSS----------------------RITVRNVEDVAVN---- 260 (1054)
T ss_dssp ---------------------------HHHHHHHCCCCSCC----------------------EECCCCEEEEEES----
T ss_pred ---------------------------HHhhcceEEEccCc----------------------ccCcCCceEEEec----
Confidence 00000000000000 0000000000000
Q ss_pred hhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHH
Q psy10680 338 MLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQ 417 (537)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~ 417 (537)
...... +... ....+...+|||.+...++.+ +..|... +++..+||++. .
T Consensus 261 ---~~k~~~------------------L~~l--l~~~~~~~LVF~~t~~~a~~l-~~~L~~~-~~v~~lhg~~~-----~ 310 (1054)
T 1gku_B 261 ---DESIST------------------LSSI--LEKLGTGGIIYARTGEEAEEI-YESLKNK-FRIGIVTATKK-----G 310 (1054)
T ss_dssp ---CCCTTT------------------THHH--HTTSCSCEEEEESSHHHHHHH-HHTTTTS-SCEEECTTSSS-----H
T ss_pred ---hhHHHH------------------HHHH--HhhcCCCEEEEEcCHHHHHHH-HHHHhhc-cCeeEEeccHH-----H
Confidence 000000 0000 001134567999999999998 7777776 88999999984 6
Q ss_pred HHHHHhcCCCcEEEE----ecccccCCCcCCc-cEEEEecCC--------------------------------------
Q psy10680 418 TLRDFRSGYINVLIA----SDVASRGLDVEDI-KYVVNYDFP-------------------------------------- 454 (537)
Q Consensus 418 ~~~~f~~g~~~iLva----T~~l~~Gidi~~~-~~Vi~~d~p-------------------------------------- 454 (537)
+++.|++|+.+|||| |+++++|||+|++ ++||++|.|
T Consensus 311 ~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1054)
T 1gku_B 311 DYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVE 390 (1054)
T ss_dssp HHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTS
T ss_pred HHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 789999999999999 8999999999995 999999999
Q ss_pred ---------------------------------CChhhhHhhhhcccCCCCCc--eeEEEecCCCcchHHHHHHHHHH
Q psy10680 455 ---------------------------------DNTENYVHRIGRTARSTKTG--ISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 455 ---------------------------------~s~~~~~Q~~GRagR~~~~g--~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
.+..+|+||+||+||.|..| .+++++...+...+..+.+.++.
T Consensus 391 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 391 RHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp SCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988876 48888888888888888888774
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.9e-36 Score=326.17 Aligned_cols=332 Identities=19% Similarity=0.227 Sum_probs=219.3
Q ss_pred hhhhcccccCCCCCCChhhhhhhhccccC------CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccC
Q psy10680 32 VASRGLGKNSGYGKPTSIQAQSWPICLSG------RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNN 105 (537)
Q Consensus 32 ~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~------~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (537)
.....+.+.+|| .||++|.++++.+.++ ++++++||||||||++
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlv----------------------------- 405 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVV----------------------------- 405 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHH-----------------------------
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHH-----------------------------
Confidence 444555567899 9999999999998876 5999999999999999
Q ss_pred ccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhH---HHhcc-C
Q psy10680 106 NVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQT---RDLCR-G 181 (537)
Q Consensus 106 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~-~ 181 (537)
|++|++..+.. |.+++|++||++|+.|+++.++.++...++++..++|+....++. ..+.. .
T Consensus 406 ------all~il~~l~~--------g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~ 471 (780)
T 1gm5_A 406 ------AQLAILDNYEA--------GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ 471 (780)
T ss_dssp ------HHHHHHHHHHH--------TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC
T ss_pred ------HHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 78888877643 567999999999999999999999888889999999998766543 33333 5
Q ss_pred CcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCch-hHHHHhhhCC
Q psy10680 182 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPG-RLIDFLESGT 260 (537)
Q Consensus 182 ~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~-~~~~~l~~~~ 260 (537)
++|+|+||+.+.. ...+.++++||+||+|++.... +. .+..........++||||. +.........
T Consensus 472 ~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q-----r~---~l~~~~~~~~vL~mSATp~p~tl~~~~~g~ 538 (780)
T 1gm5_A 472 IDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ-----RE---ALMNKGKMVDTLVMSATPIPRSMALAFYGD 538 (780)
T ss_dssp CCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----------C---CCCSSSSCCCEEEEESSCCCHHHHHHHTCC
T ss_pred CCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH-----HH---HHHHhCCCCCEEEEeCCCCHHHHHHHHhCC
Confidence 8999999987754 3568899999999999964321 11 1111111233458999942 2222211111
Q ss_pred cccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhc
Q psy10680 261 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLD 340 (537)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (537)
.... .+++... + ................+...+..
T Consensus 539 ~~~s-----~i~~~p~----~---------------r~~i~~~~~~~~~~~~l~~~i~~--------------------- 573 (780)
T 1gm5_A 539 LDVT-----VIDEMPP----G---------------RKEVQTMLVPMDRVNEVYEFVRQ--------------------- 573 (780)
T ss_dssp SSCE-----EECCCCS----S---------------CCCCEECCCCSSTHHHHHHHHHH---------------------
T ss_pred ccee-----eeeccCC----C---------------CcceEEEEeccchHHHHHHHHHH---------------------
Confidence 1100 0000000 0 00000000000011111111100
Q ss_pred CCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeecc--------Cccccccccccc---cccccccccCC
Q psy10680 341 MGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINH--------NGTETKHYGVSS---SLYRAMGIHGD 409 (537)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~--------~~~~l~~~~l~~---~~~~~~~~~~~ 409 (537)
....+...++||.... .+..+ ...+.. .++.+..+||+
T Consensus 574 ------------------------------~l~~g~qvlVf~~~ie~se~l~~~~a~~l-~~~L~~~~~~~~~v~~lHG~ 622 (780)
T 1gm5_A 574 ------------------------------EVMRGGQAFIVYPLIEESDKLNVKSAVEM-YEYLSKEVFPEFKLGLMHGR 622 (780)
T ss_dssp ------------------------------HTTTSCCBCCBCCCC--------CHHHHH-HHSGGGSCC---CBCCCCSS
T ss_pred ------------------------------HHhcCCcEEEEecchhhhhhhhHHHHHHH-HHHHHhhhcCCCcEEEEeCC
Confidence 0112223335554332 22333 344444 36788899999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCCC-ChhhhHhhhhcccCCCCCceeEEEecCCCcchH
Q psy10680 410 KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD-NTENYVHRIGRTARSTKTGISYTLFTPLNGNKA 488 (537)
Q Consensus 410 ~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~-s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~ 488 (537)
|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|. +...|.||+||+||.|..|.|++++.+.+.. .
T Consensus 623 m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~-~ 701 (780)
T 1gm5_A 623 LSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE-A 701 (780)
T ss_dssp SCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH-H
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH-H
Confidence 9999999999999999999999999999999999999999999996 6888999999999999999999998843333 3
Q ss_pred HHHHHHHHH
Q psy10680 489 QDLIDILNE 497 (537)
Q Consensus 489 ~~~~~~l~~ 497 (537)
...++.+.+
T Consensus 702 ~~rl~~l~~ 710 (780)
T 1gm5_A 702 MERLRFFTL 710 (780)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 333344443
No 35
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.7e-35 Score=316.44 Aligned_cols=381 Identities=15% Similarity=0.163 Sum_probs=241.8
Q ss_pred ccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
+..|| .|+++|..+++.+++|+ |..++||+|||++ |.+|++.
T Consensus 78 r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTla-----------------------------------f~LP~~l 119 (844)
T 1tf5_A 78 RVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLT-----------------------------------STLPVYL 119 (844)
T ss_dssp HHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHH-----------------------------------HHHHHHH
T ss_pred HHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHH-----------------------------------HHHHHHH
Confidence 35799 99999999999999998 9999999999999 7888874
Q ss_pred hhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchh-HHHHh
Q psy10680 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRL-IDFLE 197 (537)
Q Consensus 119 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~ 197 (537)
..+. |+.++||+||++|+.|.++++..+...+++++.+++||.+...+ ....+++|+|+||++| ...|.
T Consensus 120 ~aL~--------g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~ 189 (844)
T 1tf5_A 120 NALT--------GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLR 189 (844)
T ss_dssp HHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHH
T ss_pred HHHc--------CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHH
Confidence 4332 45599999999999999999999999999999999999876543 3345799999999999 55554
Q ss_pred cC------cccccceeEEEecchhhhh-hCC---------------ChHHHHHHHhhcccc------ccccCCc------
Q psy10680 198 SG------TTNVNRITYLVLDEADRML-DMG---------------FEPQIRKIIQMTRTR------DLCRGAE------ 243 (537)
Q Consensus 198 ~~------~~~~~~l~liV~DE~h~~~-~~~---------------~~~~l~~il~~~~~~------~~~~~~~------ 243 (537)
.. ...++.+.++|+||||.|+ +.. +...+..++..++.. ...+++.
T Consensus 190 D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~ 269 (844)
T 1tf5_A 190 DNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGM 269 (844)
T ss_dssp HTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHH
T ss_pred HhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHH
Confidence 32 3567889999999999988 553 456778888777520 0112232
Q ss_pred -----------eeecCchhHHHHhh----hCCcccccceeee-------ccc-hhhhh-cCCChHHHHHHHHhhhcCC--
Q psy10680 244 -----------IVVATPGRLIDFLE----SGTTNVNRITYLV-------LDE-ADRML-DMGFEPQIRKIIQMTRHAH-- 297 (537)
Q Consensus 244 -----------~~saTp~~~~~~l~----~~~~~~~~~~~~~-------~~~-~~~~~-~~~~~~~~~~~~~~~~~~~-- 297 (537)
++|||-..+..++. ....-.....+++ .++ ..++. ...+...+.+.+.......
T Consensus 270 ~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~ 349 (844)
T 1tf5_A 270 TKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQ 349 (844)
T ss_dssp HHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCC
T ss_pred HHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceec
Confidence 67888322222221 1000000011111 111 11111 1122223333322211111
Q ss_pred -Ccccc-eeeh-----------------hhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccc
Q psy10680 298 -PVVPV-SLFI-----------------SERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNT 358 (537)
Q Consensus 298 -~~~~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (537)
..... +... ......+.....-. ........... ......+++. ..
T Consensus 350 ~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~--------vv~IPtn~p~~----r~d~~d~v~~---~~ 414 (844)
T 1tf5_A 350 NESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQ--------VVTIPTNRPVV----RDDRPDLIYR---TM 414 (844)
T ss_dssp CCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCC--------EEECCCSSCCC----CEECCCEEES---SH
T ss_pred ccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCc--------eEEecCCCCcc----cccCCcEEEe---CH
Confidence 00000 0000 00011111111000 00000000000 0000000000 00
Q ss_pred eeechhhHHHHHH-hHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q psy10680 359 CVFLGYVLYFWFI-LVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVAS 437 (537)
Q Consensus 359 ~~~~~~~~~~~~~-~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~ 437 (537)
-.....++..+.. ...+...+|||.+...++.+ +..|...|++...+||++...++..+.+.++.| .|+|||++++
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~L-s~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAg 491 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELI-SKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAG 491 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHH-HHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSS
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHH-HHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccc
Confidence 0011112222221 23556788999999999999 999999999999999999877776666666555 6999999999
Q ss_pred cCCCcC--------CccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCCc
Q psy10680 438 RGLDVE--------DIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNG 485 (537)
Q Consensus 438 ~Gidi~--------~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~ 485 (537)
||+|++ +..+||+++.|.|...|.||+||+||.|.+|.+++|++..|.
T Consensus 492 RG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 492 RGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred cCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 999999 788999999999999999999999999999999999998764
No 36
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=8.3e-35 Score=326.94 Aligned_cols=384 Identities=13% Similarity=0.077 Sum_probs=230.2
Q ss_pred hcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchh
Q psy10680 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYIL 114 (537)
Q Consensus 35 ~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 114 (537)
..+.+.++| .|+++|.++++.+.+|++++++||||+|||++ |.+
T Consensus 30 ~~~~~~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv-----------------------------------~~~ 73 (997)
T 4a4z_A 30 PNPARSWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVV-----------------------------------AEY 73 (997)
T ss_dssp SSCSCCCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHH-----------------------------------HHH
T ss_pred HhHHHhCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHH-----------------------------------HHH
Confidence 344456788 68999999999999999999999999999999 666
Q ss_pred hHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHH
Q psy10680 115 PALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLID 194 (537)
Q Consensus 115 ~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~ 194 (537)
++...+.. ++++||++|+++|+.|+++.++..+. ++++..++|+.... .+++|+|+||+.|.+
T Consensus 74 ~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~ 136 (997)
T 4a4z_A 74 AIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQIN-------PDANCLIMTTEILRS 136 (997)
T ss_dssp HHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEEC-------TTSSEEEEEHHHHHH
T ss_pred HHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCccC-------CCCCEEEECHHHHHH
Confidence 66655432 66799999999999999999997654 67888888887643 458999999999999
Q ss_pred HHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecCch---hHHHHhhhCC----------
Q psy10680 195 FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVATPG---RLIDFLESGT---------- 260 (537)
Q Consensus 195 ~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saTp~---~~~~~l~~~~---------- 260 (537)
.+......+.++++|||||||++.+++++..+..++..++. .+.+ ++|||++ .+.+++....
T Consensus 137 ~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iI----lLSAT~~n~~ef~~~l~~~~~~~~~vi~~~ 212 (997)
T 4a4z_A 137 MLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI----LLSATVPNTYEFANWIGRTKQKNIYVISTP 212 (997)
T ss_dssp HHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEE----EEECCCTTHHHHHHHHHHHHTCCEEEEECS
T ss_pred HHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEE----EEcCCCCChHHHHHHHhcccCCceEEEecC
Confidence 99888788899999999999999999999889999888765 4445 8999953 3444544211
Q ss_pred cccccceeeecc--chhhhhcC--CChH-HHHHHHHhhhcCCCcccceeehhhhH----HHH-HHHHhhccc---cccce
Q psy10680 261 TNVNRITYLVLD--EADRMLDM--GFEP-QIRKIIQMTRHAHPVVPVSLFISERR----DTI-LHFLESGTT---NVNRI 327 (537)
Q Consensus 261 ~~~~~~~~~~~~--~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~---~~~~~ 327 (537)
.+..++...... ......+. .+.. .......................... ... ......... .....
T Consensus 213 ~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~ 292 (997)
T 4a4z_A 213 KRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTR 292 (997)
T ss_dssp SCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------------------------------------
T ss_pred CCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 000111111100 00000000 1111 11111110000000000000000000 000 000000000 00000
Q ss_pred eeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccccc------
Q psy10680 328 TYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLY------ 401 (537)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~------ 401 (537)
............ ........... .....-.....++ ...........+|||.++..++.+ +..+...++
T Consensus 293 g~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~li-~~l~~~~~~~~IVF~~sr~~~e~l-a~~L~~~~~~~~~e~ 367 (997)
T 4a4z_A 293 GGANRGGSRGAG--AIGSNKRKFFT-QDGPSKKTWPEIV-NYLRKRELLPMVVFVFSKKRCEEY-ADWLEGINFCNNKEK 367 (997)
T ss_dssp ---------------------------CCCCTTHHHHHH-HHHHHTTCCSEEEECSCHHHHHHH-HHTTTTCCCCCHHHH
T ss_pred cccccccccccc--ccccccccccc-ccccchhHHHHHH-HHHHhCCCCCEEEEECCHHHHHHH-HHHHhcCCCCCHHHH
Confidence 000000000000 00000000000 0000000001111 111222345778999999988887 666655443
Q ss_pred ---------------------------------ccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEE
Q psy10680 402 ---------------------------------RAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYV 448 (537)
Q Consensus 402 ---------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~V 448 (537)
.+..+||+|+..+|..+++.|++|.++|||||+++++|||+|+ ..|
T Consensus 368 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~V 446 (997)
T 4a4z_A 368 SQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTV 446 (997)
T ss_dssp HHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEE
T ss_pred HHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceE
Confidence 3577899999999999999999999999999999999999999 555
Q ss_pred EEecCC---------CChhhhHhhhhcccCCC--CCceeEEEec
Q psy10680 449 VNYDFP---------DNTENYVHRIGRTARST--KTGISYTLFT 481 (537)
Q Consensus 449 i~~d~p---------~s~~~~~Q~~GRagR~~--~~g~~~~l~~ 481 (537)
|+++.+ .|+.+|+||+|||||.| ..|.+++++.
T Consensus 447 Vi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 447 IFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp EESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred EEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 554444 49999999999999998 4677777773
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.3e-35 Score=347.36 Aligned_cols=345 Identities=17% Similarity=0.170 Sum_probs=227.5
Q ss_pred CCCCCChhhhhhhhccc-cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 42 GYGKPTSIQAQSWPICL-SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~~~-~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
||+.++++|.++++.++ +++|++++||||||||++ +.++++..+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlv-----------------------------------a~l~il~~l 120 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNV-----------------------------------ALMCMLREI 120 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHH-----------------------------------HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHH-----------------------------------HHHHHHHHH
Confidence 79999999999999866 578999999999999999 778888877
Q ss_pred hcCCCC---CCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHh
Q psy10680 121 LKMPKL---EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLE 197 (537)
Q Consensus 121 ~~~~~~---~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~ 197 (537)
...... ....+.++||++|+++|+.|+.+.++..+...|+++..++|+.....+. ..+++|+|||||++..++.
T Consensus 121 ~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr 197 (1724)
T 4f92_B 121 GKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITR 197 (1724)
T ss_dssp GGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTT
T ss_pred HhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHc
Confidence 654321 2234778999999999999999999988888899999999987654321 3578999999999987776
Q ss_pred cCc--ccccceeEEEecchhhhhhCCChHHHHHHHhhccc----cccccCCceeecC---chhHHHHhhhCCccccccee
Q psy10680 198 SGT--TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT----RDLCRGAEIVVAT---PGRLIDFLESGTTNVNRITY 268 (537)
Q Consensus 198 ~~~--~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~----~~~~~~~~~~saT---p~~~~~~l~~~~~~~~~~~~ 268 (537)
+.. ..++++++||+||+|.+.+ .++..++.++..+.. .....+...+||| +..+.+|+..... ...
T Consensus 198 ~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~----~~~ 272 (1724)
T 4f92_B 198 KGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPA----KGL 272 (1724)
T ss_dssp SSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHH----HHE
T ss_pred CCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCC----CCe
Confidence 543 2478899999999998876 578777776654321 1112233488999 3455666643110 000
Q ss_pred eeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHH
Q psy10680 269 LVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 348 (537)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (537)
...+...+.. .+ .......... ......+.....+..
T Consensus 273 ~~~~~~~RPv--pL-----------~~~~~~~~~~-~~~~~~~~~~~~~~~----------------------------- 309 (1724)
T 4f92_B 273 FYFDNSFRPV--PL-----------EQTYVGITEK-KAIKRFQIMNEIVYE----------------------------- 309 (1724)
T ss_dssp EECCGGGCSS--CE-----------EEECCEECCC-CHHHHHHHHHHHHHH-----------------------------
T ss_pred EEECCCCccC--cc-----------EEEEeccCCc-chhhhhHHHHHHHHH-----------------------------
Confidence 0111100000 00 0000000000 000000000000000
Q ss_pred HHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccc-------------------------------
Q psy10680 349 KIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVS------------------------------- 397 (537)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~------------------------------- 397 (537)
.......+...+|||.+++.++.. +..+.
T Consensus 310 -------------------~v~~~~~~~~~LVF~~sR~~~~~~-A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (1724)
T 4f92_B 310 -------------------KIMEHAGKNQVLVFVHSRKETGKT-ARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCK 369 (1724)
T ss_dssp -------------------HHTTCCSSCCEEEECSSTTTTHHH-HHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCS
T ss_pred -------------------HHHHHhcCCcEEEECCCHHHHHHH-HHHHHHHHhhccchhhhcccchhHHHHHHhhhcccc
Confidence 000000111233555554444332 11111
Q ss_pred ------ccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE----ecC------CCChhhhH
Q psy10680 398 ------SSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN----YDF------PDNTENYV 461 (537)
Q Consensus 398 ------~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~----~d~------p~s~~~~~ 461 (537)
.....+..+||||+..+|..+++.|++|.++|||||+++++|||+|+.++||. |++ |.+..+|.
T Consensus 370 ~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~ 449 (1724)
T 4f92_B 370 NLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDIL 449 (1724)
T ss_dssp THHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHH
T ss_pred cHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHH
Confidence 01233556899999999999999999999999999999999999999999984 543 46899999
Q ss_pred hhhhcccCCCC--CceeEEEecCCCcchHHHHH
Q psy10680 462 HRIGRTARSTK--TGISYTLFTPLNGNKAQDLI 492 (537)
Q Consensus 462 Q~~GRagR~~~--~g~~~~l~~~~~~~~~~~~~ 492 (537)
||+|||||.|. .|.+++++.+.+...+..++
T Consensus 450 Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll 482 (1724)
T 4f92_B 450 QMLGRAGRPQYDTKGEGILITSHGELQYYLSLL 482 (1724)
T ss_dssp HHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHT
T ss_pred HhhhhccCCCCCCccEEEEEecchhHHHHHHHH
Confidence 99999999875 68999999988877655543
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=9e-35 Score=308.42 Aligned_cols=334 Identities=16% Similarity=0.136 Sum_probs=217.2
Q ss_pred CCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhc
Q psy10680 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILK 122 (537)
Q Consensus 43 ~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 122 (537)
...|+++|.++++.+++++++++++|||+|||++ +++++...+..
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~-----------------------------------~~~~~~~~~~~ 155 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLI-----------------------------------QALLARYYLEN 155 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHH-----------------------------------HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHH-----------------------------------HHHHHHHHHhC
Confidence 3489999999999999999999999999999999 77776665543
Q ss_pred CCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCccc
Q psy10680 123 MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTN 202 (537)
Q Consensus 123 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 202 (537)
. ++++|||+|+++|+.|+.+.++.+....+..+..++++.....+ ....++|+|+||+.+.. .....
T Consensus 156 ~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~ 222 (510)
T 2oca_A 156 Y-------EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEW 222 (510)
T ss_dssp C-------SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGG
T ss_pred C-------CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhh
Confidence 1 34799999999999999999998866666788888888776544 44678999999996543 33456
Q ss_pred ccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecCchhHH----HH--hhhCCcccccceeeeccchh
Q psy10680 203 VNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVATPGRLI----DF--LESGTTNVNRITYLVLDEAD 275 (537)
Q Consensus 203 ~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saTp~~~~----~~--l~~~~~~~~~~~~~~~~~~~ 275 (537)
+.++++||+||||++.. ..+..++..+.. .... .+||||.+.. .. +.... ... ... .
T Consensus 223 ~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l----~lSATp~~~~~~~~~~~~~~~~~-----~~~--~~~-~ 286 (510)
T 2oca_A 223 FSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF----GLSGSLRDGKANIMQYVGMFGEI-----FKP--VTT-S 286 (510)
T ss_dssp GGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEE----EEESCGGGCSSCHHHHHHHHCSE-----ECC--CCC-C
T ss_pred hhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEE----EEEeCCCCCcccHHHhHHhhCCe-----EEe--eCH-H
Confidence 78899999999999865 456666666533 3444 7899974321 00 10000 000 000 0
Q ss_pred hhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhcc
Q psy10680 276 RMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355 (537)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (537)
.....+ . .. ................ ..... ... .. ....+.....
T Consensus 287 ~~~~~~------~-l~----~~~~~~~~~~~~~~~~---~~~~~--~~~--------~~-----------~~~~~~~~~~ 331 (510)
T 2oca_A 287 KLMEDG------Q-VT----ELKINSIFLRYPDEFT---TKLKG--KTY--------QE-----------EIKIITGLSK 331 (510)
T ss_dssp --------------------CCEEEEEEEECCHHHH---HHHTT--CCH--------HH-----------HHHHHHTCHH
T ss_pred HHhhCC------c-CC----CceEEEEeecCChHHh---ccccc--cch--------HH-----------HHHHHhccHH
Confidence 000000 0 00 0000000000000000 00000 000 00 0000000000
Q ss_pred ccceeechhhHHHH-HHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEe-
Q psy10680 356 FNTCVFLGYVLYFW-FILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIAS- 433 (537)
Q Consensus 356 ~~~~~~~~~~~~~~-~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT- 433 (537)
.. ..+...+ .....+...++++.....+..+ ...+...+.++..+||+++..+|.++++.|++|+.+|||||
T Consensus 332 --~~---~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l-~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 332 --RN---KWIAKLAIKLAQKDENAFVMFKHVSHGKAI-FDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp --HH---HHHHHHHHHHHTTTCEEEEEESSHHHHHHH-HHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred --HH---HHHHHHHHHHHhcCCCeEEEEecHHHHHHH-HHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 00 0000011 1111233444444447777776 88888877789999999999999999999999999999999
Q ss_pred cccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeEEEec
Q psy10680 434 DVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFT 481 (537)
Q Consensus 434 ~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~ 481 (537)
+++++|+|+|++++||+++.|.++..|.|++||+||.|+.+..+++++
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999998875555554
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=2.4e-33 Score=319.64 Aligned_cols=318 Identities=19% Similarity=0.182 Sum_probs=225.2
Q ss_pred hhhhhhcccccCCCCCCChhhhhhhhcccc----CC--cEEEEccCCCccccccccccchhccccccCCCCCcccccccc
Q psy10680 30 SDVASRGLGKNSGYGKPTSIQAQSWPICLS----GR--DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWW 103 (537)
Q Consensus 30 ~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~----~~--~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (537)
.+.....+.+.++| .||++|.++++.+++ ++ ++++++|||+|||++
T Consensus 589 ~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~v--------------------------- 640 (1151)
T 2eyq_A 589 DREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV--------------------------- 640 (1151)
T ss_dssp CHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHH---------------------------
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHH---------------------------
Confidence 33444555566788 579999999999886 55 999999999999999
Q ss_pred cCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhH---HHhcc
Q psy10680 104 NNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQT---RDLCR 180 (537)
Q Consensus 104 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~ 180 (537)
++++++..+.. +++++|++||++|+.|+++.++..+...++++..+++.....+.. ..+..
T Consensus 641 --------al~aa~~~~~~--------g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~ 704 (1151)
T 2eyq_A 641 --------AMRAAFLAVDN--------HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 704 (1151)
T ss_dssp --------HHHHHHHHHTT--------TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHh--------CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhc
Confidence 66676665432 567999999999999999999988887788888888766544432 23333
Q ss_pred -CCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecCch-hHHHHhh
Q psy10680 181 -GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVATPG-RLIDFLE 257 (537)
Q Consensus 181 -~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saTp~-~~~~~l~ 257 (537)
.++|+|+||+.+. ....+.++++||+||+|++. ......+..++. .... ++||||. +......
T Consensus 705 g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~g-----~~~~~~l~~l~~~~~vl----~lSATp~p~~l~~~~ 770 (1151)
T 2eyq_A 705 GKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRFG-----VRHKERIKAMRANVDIL----TLTATPIPRTLNMAM 770 (1151)
T ss_dssp TCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGSC-----HHHHHHHHHHHTTSEEE----EEESSCCCHHHHHHH
T ss_pred CCCCEEEECHHHHh-----CCccccccceEEEechHhcC-----hHHHHHHHHhcCCCCEE----EEcCCCChhhHHHHH
Confidence 5899999997553 34568899999999999953 344444444433 3334 8999953 3332222
Q ss_pred hCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhh-hHHHHHHHHhhccccccceeeeecchhh
Q psy10680 258 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISE-RRDTILHFLESGTTNVNRITYLVLDEAD 336 (537)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (537)
...... .. +... .........+... ....+.
T Consensus 771 ~~~~~~---~~--i~~~---------------------~~~r~~i~~~~~~~~~~~i~---------------------- 802 (1151)
T 2eyq_A 771 SGMRDL---SI--IATP---------------------PARRLAVKTFVREYDSMVVR---------------------- 802 (1151)
T ss_dssp TTTSEE---EE--CCCC---------------------CCBCBCEEEEEEECCHHHHH----------------------
T ss_pred hcCCCc---eE--EecC---------------------CCCccccEEEEecCCHHHHH----------------------
Confidence 111000 00 0000 0000000000000 000000
Q ss_pred hhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCcccccccccccc--ccccccccCCCCHHH
Q psy10680 337 RMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSS--LYRAMGIHGDKSQWN 414 (537)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~~~~ 414 (537)
.........+...++||+....+..+ +..+... +..+..+||+|+..+
T Consensus 803 -----------------------------~~il~~l~~g~qvlvf~~~v~~~~~l-~~~L~~~~p~~~v~~lhg~~~~~e 852 (1151)
T 2eyq_A 803 -----------------------------EAILREILRGGQVYYLYNDVENIQKA-AERLAELVPEARIAIGHGQMRERE 852 (1151)
T ss_dssp -----------------------------HHHHHHHTTTCEEEEECCCSSCHHHH-HHHHHHHCTTSCEEECCSSCCHHH
T ss_pred -----------------------------HHHHHHHhcCCeEEEEECCHHHHHHH-HHHHHHhCCCCeEEEEeCCCCHHH
Confidence 00111223455677999999988888 6666665 678889999999999
Q ss_pred HHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecC-CCChhhhHhhhhcccCCCCCceeEEEecCC
Q psy10680 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF-PDNTENYVHRIGRTARSTKTGISYTLFTPL 483 (537)
Q Consensus 415 r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~-p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~ 483 (537)
|..+++.|++|+.+|||||+++++|+|+|++++||+++. +.+...|.||+||+||.|+.|.|++++.+.
T Consensus 853 R~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 853 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp HHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred HHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 999999999999999999999999999999999999998 468899999999999999999999998764
No 40
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=8.5e-34 Score=302.43 Aligned_cols=379 Identities=15% Similarity=0.135 Sum_probs=217.6
Q ss_pred ccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
+..|+ .|+++|..+++.+++|+ |..++||+|||++ |.+|++.
T Consensus 69 R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTla-----------------------------------f~LP~l~ 110 (853)
T 2fsf_A 69 RVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLT-----------------------------------ATLPAYL 110 (853)
T ss_dssp HHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHH-----------------------------------HHHHHHH
T ss_pred HHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHH-----------------------------------HHHHHHH
Confidence 34676 99999999999999987 9999999999999 7888875
Q ss_pred hhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchh-HHHHh
Q psy10680 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRL-IDFLE 197 (537)
Q Consensus 119 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~ 197 (537)
..+. |+.++||+||++|+.|.++++..++..+++++.+++||.+... ..+..+++|+||||++| .+.|.
T Consensus 111 ~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLr 180 (853)
T 2fsf_A 111 NALT--------GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLR 180 (853)
T ss_dssp HHTT--------SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHH
T ss_pred HHHc--------CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHH
Confidence 4432 4569999999999999999999999999999999999987543 34445799999999999 67775
Q ss_pred cCc------ccccceeEEEecchhhhh-hCC---------------ChHHHHHHHhhccccc-----------------c
Q psy10680 198 SGT------TNVNRITYLVLDEADRML-DMG---------------FEPQIRKIIQMTRTRD-----------------L 238 (537)
Q Consensus 198 ~~~------~~~~~l~liV~DE~h~~~-~~~---------------~~~~l~~il~~~~~~~-----------------~ 238 (537)
.+. ..+++++++|+||||.++ +.. +...+..++..++... .
T Consensus 181 d~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek 260 (853)
T 2fsf_A 181 DNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEK 260 (853)
T ss_dssp HTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC----------------------------------------
T ss_pred hhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccc
Confidence 442 567899999999999998 442 4456666666664310 0
Q ss_pred ccCC------------------------ceeecCchhHHHHhhhC----Ccccccceeeeccc--------hhhhhc-CC
Q psy10680 239 CRGA------------------------EIVVATPGRLIDFLESG----TTNVNRITYLVLDE--------ADRMLD-MG 281 (537)
Q Consensus 239 ~~~~------------------------~~~saTp~~~~~~l~~~----~~~~~~~~~~~~~~--------~~~~~~-~~ 281 (537)
.+++ .++|||-..+..++... .+......+++.+. ..++.. ..
T Consensus 261 ~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr 340 (853)
T 2fsf_A 261 SRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRR 340 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCc
Confidence 1111 14444411111111110 00000000110000 000000 00
Q ss_pred ChHHHHHHHHh---hhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhc----
Q psy10680 282 FEPQIRKIIQM---TRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT---- 354 (537)
Q Consensus 282 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 354 (537)
++..+-+.+.. ............. ...++.... .++..+. ... .........++...
T Consensus 341 ~sdGLhQaieake~v~I~~e~~tla~I---t~qnyfr~Y-------~kl~GmT-GTa-----~te~~ef~~iY~l~vv~I 404 (853)
T 2fsf_A 341 WSDGLHQAVEAKEGVQIQNENQTLASI---TFQNYFRLY-------EKLAGMT-GTA-----DTEAFEFSSIYKLDTVVV 404 (853)
T ss_dssp ----------------CCCCCEEEEEE---EHHHHHTTS-------SEEEEEE-CTT-----CCCHHHHHHHHCCEEEEC
T ss_pred cchhhhHHHHhcccceeccccccccee---ehHHHHhhh-------hhhhcCC-CCc-----hhHHHHHHHHhCCcEEEc
Confidence 00000000000 0000000000000 000000000 0000000 000 00000111110000
Q ss_pred ---------cc------cceeechhhHHHHHHh-HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHH
Q psy10680 355 ---------RF------NTCVFLGYVLYFWFIL-VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQT 418 (537)
Q Consensus 355 ---------~~------~~~~~~~~~~~~~~~~-~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~ 418 (537)
.. ..-.....++..+... ..+...+|||.+...++.+ +..|...|++...+||++...++..+
T Consensus 405 Ptn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~L-s~~L~~~gi~~~vLnak~~~rEa~ii 483 (853)
T 2fsf_A 405 PTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELV-SNELTKAGIKHNVLNAKFHANEAAIV 483 (853)
T ss_dssp CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHH-HHHHHHTTCCCEECCTTCHHHHHHHH
T ss_pred CCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHH-HHHHHHCCCCEEEecCChhHHHHHHH
Confidence 00 0000111122222222 3456788999999999999 99999999999999999988888888
Q ss_pred HHHHhcCCCcEEEEecccccCCCcCCc-------------------------------------cEEEEecCCCChhhhH
Q psy10680 419 LRDFRSGYINVLIASDVASRGLDVEDI-------------------------------------KYVVNYDFPDNTENYV 461 (537)
Q Consensus 419 ~~~f~~g~~~iLvaT~~l~~Gidi~~~-------------------------------------~~Vi~~d~p~s~~~~~ 461 (537)
.+.|+.| .|+|||++++||+|++.. .+||+++.|.|...|.
T Consensus 484 a~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~ 561 (853)
T 2fsf_A 484 AQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDN 561 (853)
T ss_dssp HTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHH
T ss_pred HhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHH
Confidence 8888888 699999999999999863 5999999999999999
Q ss_pred hhhhcccCCCCCceeEEEecCCC
Q psy10680 462 HRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 462 Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
||+||+||.|.+|.+++|++..|
T Consensus 562 qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 562 QLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp HHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhccccccCCCCeeEEEEecccH
Confidence 99999999999999999998776
No 41
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=7.4e-34 Score=298.41 Aligned_cols=336 Identities=19% Similarity=0.159 Sum_probs=205.3
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.|+++|.++++.+..++++++++|||+|||++ ++.++...
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~-----------------------------------~l~~i~~~----- 132 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHV-----------------------------------AMAAINEL----- 132 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHH-----------------------------------HHHHHHHH-----
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHH-----------------------------------HHHHHHHc-----
Confidence 79999999999999999999999999999999 66665543
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceee-EEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNV 203 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 203 (537)
+.++||++|+++|+.|+.+.++.+ +++ +..++|+... ..+|+|+||+.+...+.. ..
T Consensus 133 ------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~ 190 (472)
T 2fwr_A 133 ------STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LG 190 (472)
T ss_dssp ------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HT
T ss_pred ------CCCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hc
Confidence 345999999999999999999873 667 7777776543 478999999998776542 22
Q ss_pred cceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchh-------HHHHhhhCCcccccceee---eccc
Q psy10680 204 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGR-------LIDFLESGTTNVNRITYL---VLDE 273 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~-------~~~~l~~~~~~~~~~~~~---~~~~ 273 (537)
.++++||+||||++.+..+.. ++..++....+ ++||||.+ +..++........ ...+ .+..
T Consensus 191 ~~~~liIvDEaH~~~~~~~~~----~~~~~~~~~~l----~lSATp~~~~~~~~~l~~~~~~~~~~~~-~~~l~~~~l~~ 261 (472)
T 2fwr_A 191 NRFMLLIFDEVHHLPAESYVQ----IAQMSIAPFRL----GLTATFEREDGRHEILKEVVGGKVFELF-PDSLAGKHLAK 261 (472)
T ss_dssp TTCSEEEEETGGGTTSTTTHH----HHHTCCCSEEE----EEESCCCCTTSGGGSHHHHTCCEEEECC-HHHHTSCCCCS
T ss_pred CCCCEEEEECCcCCCChHHHH----HHHhcCCCeEE----EEecCccCCCCHHHHHHHHhCCeEeecC-HHHHhcCcCCC
Confidence 469999999999998876543 44455444444 88999862 1111110000000 0000 0000
Q ss_pred hh-hhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhc-------CCC--
Q psy10680 274 AD-RMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLD-------MGF-- 343 (537)
Q Consensus 274 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-- 343 (537)
.. ........+......... .......+.... +............. ...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (472)
T 2fwr_A 262 YTIKRIFVPLAEDERVEYEKR----------------EKVYKQFLRARG-----ITLRRAEDFNKIVMASGYDERAYEAL 320 (472)
T ss_dssp EEECCEEECCCHHHHHHTTTT----------------THHHHSCSSSCC-----CTTTCCSSSTTTTTTTCCSSSSSTTT
T ss_pred eEEEEEEcCCCHHHHHHHHHH----------------HHHHHHHHHhcC-----ccccchhhHHHHHHHhccCHHHHHHH
Confidence 00 000000000000000000 000000000000 00000000000000 000
Q ss_pred -hhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHH
Q psy10680 344 -EPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDF 422 (537)
Q Consensus 344 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 422 (537)
.......+... .......+.. ......+.+.+|||.....++.+ ...+. +..+||+++..+|.++++.|
T Consensus 321 ~~~~~~~~~~~~---~~~k~~~l~~-~l~~~~~~k~lvF~~~~~~~~~l-~~~l~-----~~~~~g~~~~~~R~~~~~~F 390 (472)
T 2fwr_A 321 RAWEEARRIAFN---SKNKIRKLRE-ILERHRKDKIIIFTRHNELVYRI-SKVFL-----IPAITHRTSREEREEILEGF 390 (472)
T ss_dssp HHHHHHHHHHHS---CSHHHHHHHH-HHHHTSSSCBCCBCSCHHHHHHH-HHHTT-----CCBCCSSSCSHHHHTHHHHH
T ss_pred HHHHHHHHHhhc---ChHHHHHHHH-HHHhCCCCcEEEEECCHHHHHHH-HHHhC-----cceeeCCCCHHHHHHHHHHH
Confidence 00000000000 1111111111 12224567888999999888877 54442 55689999999999999999
Q ss_pred hcCCCcEEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCC-cee--EEEecC
Q psy10680 423 RSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT-GIS--YTLFTP 482 (537)
Q Consensus 423 ~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~-g~~--~~l~~~ 482 (537)
++|+.+|||||+++++|+|+|++++||++|.|+++..|.|++||+||.|+. +.+ +.++..
T Consensus 391 ~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 391 RTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp HHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred hCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 999999999999999999999999999999999999999999999999865 444 445554
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=7.3e-34 Score=295.47 Aligned_cols=287 Identities=17% Similarity=0.123 Sum_probs=194.9
Q ss_pred CCCCCChhhhhhhhccccCCcE-EEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 42 GYGKPTSIQAQSWPICLSGRDL-IGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~~~~~~~v-li~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
|+..|+++|. +++.+++++++ ++++|||||||++ |++|++..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~-----------------------------------~~~~~l~~~ 44 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKR-----------------------------------ILPSIVREA 44 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTT-----------------------------------HHHHHHHHH
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhH-----------------------------------HHHHHHHHH
Confidence 6779999985 79999998877 9999999999999 788887766
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCc
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGT 200 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~ 200 (537)
... ++++||++||++|+.|+.+.+.. +.+......... ....+..|.++|++.+.+.+...
T Consensus 45 ~~~-------~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~- 105 (451)
T 2jlq_A 45 LLR-------RLRTLILAPTRVVAAEMEEALRG------LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS- 105 (451)
T ss_dssp HHT-------TCCEEEEESSHHHHHHHHHHTTT------SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-
T ss_pred Hhc-------CCcEEEECCCHHHHHHHHHHhcC------ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-
Confidence 542 56799999999999999998852 222111111100 11235678999999988776543
Q ss_pred ccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchh-HHHHhhhCCcccccceeeeccchhhhhc
Q psy10680 201 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGR-LIDFLESGTTNVNRITYLVLDEADRMLD 279 (537)
Q Consensus 201 ~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 279 (537)
..+.++++||+||||++ +..+...+..+..... ....+..++|||+.. ...+.. ......... .
T Consensus 106 ~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~--~~~~~~i~~SAT~~~~~~~~~~------~~~~~~~~~---~--- 170 (451)
T 2jlq_A 106 TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE--MGEAAAIFMTATPPGSTDPFPQ------SNSPIEDIE---R--- 170 (451)
T ss_dssp SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHH--TTSCEEEEECSSCTTCCCSSCC------CSSCEEEEE---C---
T ss_pred ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhc--CCCceEEEEccCCCccchhhhc------CCCceEecC---c---
Confidence 45788999999999987 2211221111211111 111233489999532 100000 000000000 0
Q ss_pred CCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccce
Q psy10680 280 MGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTC 359 (537)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (537)
..+...+ . .
T Consensus 171 -------------------~~p~~~~-~-------------------------~-------------------------- 179 (451)
T 2jlq_A 171 -------------------EIPERSW-N-------------------------T-------------------------- 179 (451)
T ss_dssp -------------------CCCSSCC-S-------------------------S--------------------------
T ss_pred -------------------cCCchhh-H-------------------------H--------------------------
Confidence 0000000 0 0
Q ss_pred eechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccC
Q psy10680 360 VFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439 (537)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~G 439 (537)
.. ........+.+|||.+...++.+ ...|...++.+..+||.+. ..+++.|++|+.+|||||+++++|
T Consensus 180 -----~~--~~l~~~~~~~lVF~~s~~~a~~l-~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~G 247 (451)
T 2jlq_A 180 -----GF--DWITDYQGKTVWFVPSIKAGNDI-ANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMG 247 (451)
T ss_dssp -----SC--HHHHHCCSCEEEECSSHHHHHHH-HHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSS
T ss_pred -----HH--HHHHhCCCCEEEEcCCHHHHHHH-HHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhC
Confidence 00 00011233566999999999998 8888888999999999654 578999999999999999999999
Q ss_pred CCcCCccEEEEec--------------------CCCChhhhHhhhhcccCCCC-CceeEEEecC
Q psy10680 440 LDVEDIKYVVNYD--------------------FPDNTENYVHRIGRTARSTK-TGISYTLFTP 482 (537)
Q Consensus 440 idi~~~~~Vi~~d--------------------~p~s~~~~~Q~~GRagR~~~-~g~~~~l~~~ 482 (537)
+|+|+ ++||++| .|.+..+|+||+||+||.|. .|.+++++..
T Consensus 248 iDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 248 ANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999 9999998 99999999999999999998 7888877644
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.3e-33 Score=302.30 Aligned_cols=322 Identities=16% Similarity=0.114 Sum_probs=219.6
Q ss_pred eeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCc
Q psy10680 27 LIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNN 106 (537)
Q Consensus 27 ~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (537)
+..++.+...+.+ ....|+|+|+.+++.+++|++++++||||||||++
T Consensus 155 l~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~------------------------------ 202 (618)
T 2whx_A 155 VTKSGDYVSAITQ--AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKR------------------------------ 202 (618)
T ss_dssp -------CEECBC--CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTT------------------------------
T ss_pred ccchHHHHHHHhh--ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHH------------------------------
Confidence 3455555555532 14688999999999999999999999999999999
Q ss_pred cccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEE
Q psy10680 107 VVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVV 186 (537)
Q Consensus 107 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv 186 (537)
|++|++..+... ++++||++||++|+.|+.+.++. ..+. +.+.... .....+..+.+
T Consensus 203 -----~~lpil~~l~~~-------~~~vLvl~PtreLa~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~ 259 (618)
T 2whx_A 203 -----ILPSIVREALKR-------RLRTLILAPTRVVAAEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDL 259 (618)
T ss_dssp -----HHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEE
T ss_pred -----HHHHHHHHHHhC-------CCeEEEEcChHHHHHHHHHHhcC------Ccee-Eecccce----eccCCCceEEE
Confidence 788888777652 56799999999999999988862 2222 1111100 00112345667
Q ss_pred eCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhcc--ccccccCCceeecCchhH-HHHhhhCCccc
Q psy10680 187 ATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR--TRDLCRGAEIVVATPGRL-IDFLESGTTNV 263 (537)
Q Consensus 187 ~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~--~~~~~~~~~~~saTp~~~-~~~l~~~~~~~ 263 (537)
+|.+.+.+.+... ..+.++++||+||||++ +..+...+..++..++ ..+.+ ++|||+... ..+...
T Consensus 260 ~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~i----l~SAT~~~~~~~~~~~----- 328 (618)
T 2whx_A 260 MCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAI----FMTATPPGSTDPFPQS----- 328 (618)
T ss_dssp EEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEE----EECSSCTTCCCSSCCC-----
T ss_pred EChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEE----EEECCCchhhhhhhcc-----
Confidence 7777776655443 45788999999999998 4445566666666653 24444 999995321 100000
Q ss_pred ccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCC
Q psy10680 264 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGF 343 (537)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (537)
+ ........ . .+ ....
T Consensus 329 ~-~~~~~v~~-------~------------------~~-----~~~~--------------------------------- 344 (618)
T 2whx_A 329 N-SPIEDIER-------E------------------IP-----ERSW--------------------------------- 344 (618)
T ss_dssp S-SCEEEEEC-------C------------------CC-----SSCC---------------------------------
T ss_pred C-Cceeeecc-------c------------------CC-----HHHH---------------------------------
Confidence 0 00000000 0 00 0000
Q ss_pred hhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHh
Q psy10680 344 EPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFR 423 (537)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 423 (537)
...+.. ......+.+|||.+...++.+ +..|...++++..+||. +|.++++.|+
T Consensus 345 -------------------~~ll~~--l~~~~~~~LVF~~s~~~a~~l-~~~L~~~g~~v~~lhg~----~R~~~l~~F~ 398 (618)
T 2whx_A 345 -------------------NTGFDW--ITDYQGKTVWFVPSIKAGNDI-ANCLRKSGKRVIQLSRK----TFDTEYPKTK 398 (618)
T ss_dssp -------------------SSSCHH--HHHCCSCEEEECSSHHHHHHH-HHHHHHTTCCEEEECTT----THHHHTTHHH
T ss_pred -------------------HHHHHH--HHhCCCCEEEEECChhHHHHH-HHHHHHcCCcEEEEChH----HHHHHHHhhc
Confidence 000000 011244566999999999999 88888889999999984 7888999999
Q ss_pred cCCCcEEEEecccccCCCcCCccEE--------------------EEecCCCChhhhHhhhhcccCCCC-CceeEEEec-
Q psy10680 424 SGYINVLIASDVASRGLDVEDIKYV--------------------VNYDFPDNTENYVHRIGRTARSTK-TGISYTLFT- 481 (537)
Q Consensus 424 ~g~~~iLvaT~~l~~Gidi~~~~~V--------------------i~~d~p~s~~~~~Q~~GRagR~~~-~g~~~~l~~- 481 (537)
+|+.+|||||+++++|+|+| +++| |+++.|.+..+|+||+||+||.|. .|.+++|+.
T Consensus 399 ~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~ 477 (618)
T 2whx_A 399 LTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 477 (618)
T ss_dssp HSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccC
Confidence 99999999999999999997 8888 777889999999999999999965 899999997
Q ss_pred --CCCcchHHHHHHHHHHccccccHH
Q psy10680 482 --PLNGNKAQDLIDILNEAHQFVPDR 505 (537)
Q Consensus 482 --~~~~~~~~~~~~~l~~~~~~~~~~ 505 (537)
+.+...+..+...+...+..+|+.
T Consensus 478 ~~~~d~~~l~~le~~i~l~~~~~~~~ 503 (618)
T 2whx_A 478 PLKNDEDHAHWTEAKMLLDNIYTPEG 503 (618)
T ss_dssp CCCCCTTCHHHHHHHHHHTTCCCTTC
T ss_pred CchhhHHHHHHHHhHhccccccCCcc
Confidence 677777777777766555555443
No 44
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=8.8e-33 Score=294.86 Aligned_cols=381 Identities=16% Similarity=0.160 Sum_probs=241.1
Q ss_pred ccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
+..|+ .|+++|..+++.+.+|+ |..++||+|||++ |.+|++.
T Consensus 106 R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa-----------------------------------~~LP~~l 147 (922)
T 1nkt_A 106 RVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLT-----------------------------------CVLPAYL 147 (922)
T ss_dssp HHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHH-----------------------------------THHHHHH
T ss_pred HHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHH-----------------------------------HHHHHHH
Confidence 45788 99999999999999987 9999999999999 7888865
Q ss_pred hhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchh-HHHHh
Q psy10680 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRL-IDFLE 197 (537)
Q Consensus 119 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~ 197 (537)
..+. |..++||+||++|+.|.++++..+...+|+++.+++||.+...+ .....++|++|||..| ++.|.
T Consensus 148 ~aL~--------g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLr 217 (922)
T 1nkt_A 148 NALA--------GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLR 217 (922)
T ss_dssp HHTT--------TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHH
T ss_pred HHHh--------CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHH
Confidence 4432 34599999999999999999999999999999999999875433 3345789999999999 66665
Q ss_pred cC------cccccceeEEEecchhhhh-hC---------------CChHHHHHHHhhcccc------ccccCCc------
Q psy10680 198 SG------TTNVNRITYLVLDEADRML-DM---------------GFEPQIRKIIQMTRTR------DLCRGAE------ 243 (537)
Q Consensus 198 ~~------~~~~~~l~liV~DE~h~~~-~~---------------~~~~~l~~il~~~~~~------~~~~~~~------ 243 (537)
.. ...++.+.++|+||||.|+ +. ++...+..++..++.. ...+++.
T Consensus 218 D~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~ 297 (922)
T 1nkt_A 218 DNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGV 297 (922)
T ss_dssp HTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHH
T ss_pred hhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHH
Confidence 43 3567889999999999998 32 3567788888877620 0112222
Q ss_pred -----------eeecC-ch---hHHHHhhhCCcccccceeee-------ccc-hhhhh-cCCChHHHHHHHHhhhcCC--
Q psy10680 244 -----------IVVAT-PG---RLIDFLESGTTNVNRITYLV-------LDE-ADRML-DMGFEPQIRKIIQMTRHAH-- 297 (537)
Q Consensus 244 -----------~~saT-p~---~~~~~l~~~~~~~~~~~~~~-------~~~-~~~~~-~~~~~~~~~~~~~~~~~~~-- 297 (537)
++||| +. .+...+....+......+++ .++ ..++. +..++..+-+.+.......
T Consensus 298 ~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~ 377 (922)
T 1nkt_A 298 EFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIK 377 (922)
T ss_dssp HHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCC
T ss_pred HHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhcccccccc
Confidence 56777 32 22221111000000111111 111 11111 1112222333322211111
Q ss_pred -Ccccc-eee-----------------hhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccc
Q psy10680 298 -PVVPV-SLF-----------------ISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNT 358 (537)
Q Consensus 298 -~~~~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (537)
..... +.. .......+..+..- .........-. ... ....+++.+ .
T Consensus 378 ~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l--------~vv~IPtn~p~---~R~-d~~d~v~~t---~ 442 (922)
T 1nkt_A 378 AENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL--------GVVSIPTNMPM---IRE-DQSDLIYKT---E 442 (922)
T ss_dssp CCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC--------EEEECCCSSCC---CCE-ECCCEEESC---H
T ss_pred ccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC--------CeEEeCCCCCc---ccc-cCCcEEEeC---H
Confidence 00000 000 00001111111100 00000000000 000 000000000 0
Q ss_pred eeechhhHHHHHH-hHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q psy10680 359 CVFLGYVLYFWFI-LVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVAS 437 (537)
Q Consensus 359 ~~~~~~~~~~~~~-~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~ 437 (537)
-.....++..+.. ...+...+|||.+...++.+ +..|...|++...+||++...++..+.+.|+.| .|+|||++++
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~L-s~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg 519 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYL-SRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAG 519 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-HHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCS
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHH-HHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhh
Confidence 0011111222211 23455678999999999999 999999999999999998777777777778777 6999999999
Q ss_pred cCCCcCCc----------------------------------------------------cEEEEecCCCChhhhHhhhh
Q psy10680 438 RGLDVEDI----------------------------------------------------KYVVNYDFPDNTENYVHRIG 465 (537)
Q Consensus 438 ~Gidi~~~----------------------------------------------------~~Vi~~d~p~s~~~~~Q~~G 465 (537)
||+||+.. .+||+++.|.|...|.|++|
T Consensus 520 RGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~G 599 (922)
T 1nkt_A 520 RGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRG 599 (922)
T ss_dssp TTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHH
T ss_pred cCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhc
Confidence 99999864 59999999999999999999
Q ss_pred cccCCCCCceeEEEecCCCc
Q psy10680 466 RTARSTKTGISYTLFTPLNG 485 (537)
Q Consensus 466 RagR~~~~g~~~~l~~~~~~ 485 (537)
|+||.|.+|.+++|++..|.
T Consensus 600 RTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 600 RSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TSSGGGCCEEEEEEEETTSH
T ss_pred ccccCCCCeeEEEEechhHH
Confidence 99999999999999988764
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.98 E-value=4.8e-34 Score=307.59 Aligned_cols=298 Identities=17% Similarity=0.147 Sum_probs=196.5
Q ss_pred hcccccCCCC-----CCChhhh-----hhhhccc------cCCcEEEEccCCCccccccccccchhccccccCCCCCccc
Q psy10680 35 RGLGKNSGYG-----KPTSIQA-----QSWPICL------SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98 (537)
Q Consensus 35 ~~l~~~~g~~-----~~~~~Q~-----~ai~~~~------~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 98 (537)
.++. ..||. .|+++|+ .+++.++ ++++++++||||||||++
T Consensus 201 ~~l~-~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~---------------------- 257 (673)
T 2wv9_A 201 IGLY-GNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRR---------------------- 257 (673)
T ss_dssp EEEE-EEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTT----------------------
T ss_pred EEee-eccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHH----------------------
Confidence 3453 45666 8999999 9999988 899999999999999999
Q ss_pred ccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh
Q psy10680 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL 178 (537)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 178 (537)
|++|++..+... ++++||++||++|+.|+++.++.+. +. ...+...
T Consensus 258 -------------~ll~il~~l~~~-------~~~~lilaPTr~La~Q~~~~l~~~~----i~--~~~~~l~-------- 303 (673)
T 2wv9_A 258 -------------ILPQIIKDAIQK-------RLRTAVLAPTRVVAAEMAEALRGLP----VR--YLTPAVQ-------- 303 (673)
T ss_dssp -------------HHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTSC----CE--ECCC-----------
T ss_pred -------------HHHHHHHHHHhC-------CCcEEEEccHHHHHHHHHHHHhcCC----ee--eeccccc--------
Confidence 778888776542 5679999999999999999887442 21 0000000
Q ss_pred ccCCcEEEeCCchhH---------HHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCc
Q psy10680 179 CRGAEIVVATPGRLI---------DFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATP 249 (537)
Q Consensus 179 ~~~~~Ivv~Tp~~l~---------~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp 249 (537)
.++||+++. ..+.. ...+.++++||+||||++.. .+...+..+....+. ...+..++|||+
T Consensus 304 ------~v~tp~~ll~~l~~~~l~~~l~~-~~~l~~l~lvViDEaH~~~~-~~~~~~~~l~~~~~~--~~~~vl~~SAT~ 373 (673)
T 2wv9_A 304 ------REHSGNEIVDVMCHATLTHRLMS-PLRVPNYNLFVMDEAHFTDP-ASIAARGYIATRVEA--GEAAAIFMTATP 373 (673)
T ss_dssp ------CCCCSCCCEEEEEHHHHHHHHHS-SSCCCCCSEEEEESTTCCCH-HHHHHHHHHHHHHHT--TSCEEEEECSSC
T ss_pred ------ccCCHHHHHHHHHhhhhHHHHhc-ccccccceEEEEeCCcccCc-cHHHHHHHHHHhccc--cCCcEEEEcCCC
Confidence 144554443 22222 24678999999999999711 111122222222211 112334899995
Q ss_pred hhH-HHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhcccccccee
Q psy10680 250 GRL-IDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRIT 328 (537)
Q Consensus 250 ~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (537)
..- ..+... -.++. ... .. .. ...
T Consensus 374 ~~~i~~~~~~----~~~i~---------------------------------~v~---~~--------~~-----~~~-- 398 (673)
T 2wv9_A 374 PGTSDPFPDT----NSPVH---------------------------------DVS---SE--------IP-----DRA-- 398 (673)
T ss_dssp TTCCCSSCCC----SSCEE---------------------------------EEE---CC--------CC-----SSC--
T ss_pred Chhhhhhccc----CCceE---------------------------------EEe---ee--------cC-----HHH--
Confidence 311 000000 00000 000 00 00 000
Q ss_pred eeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccC
Q psy10680 329 YLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHG 408 (537)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~ 408 (537)
.. . .+. .....+.+.+|||.+...++.+ +..|...++++..+||
T Consensus 399 --------------~~-------------~------~l~--~l~~~~~~~lVF~~s~~~~e~l-a~~L~~~g~~v~~lHg 442 (673)
T 2wv9_A 399 --------------WS-------------S------GFE--WITDYAGKTVWFVASVKMSNEI-AQCLQRAGKRVIQLNR 442 (673)
T ss_dssp --------------CS-------------S------CCH--HHHSCCSCEEEECSSHHHHHHH-HHHHHTTTCCEEEECS
T ss_pred --------------HH-------------H------HHH--HHHhCCCCEEEEECCHHHHHHH-HHHHHhCCCeEEEeCh
Confidence 00 0 000 0111245566999999999988 8888888999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEE--------------------ecCCCChhhhHhhhhccc
Q psy10680 409 DKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVN--------------------YDFPDNTENYVHRIGRTA 468 (537)
Q Consensus 409 ~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~--------------------~d~p~s~~~~~Q~~GRag 468 (537)
.+|.++++.|++|+.+|||||+++++|||+| +++||+ ||.|.+..+|+||+||+|
T Consensus 443 ----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaG 517 (673)
T 2wv9_A 443 ----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVG 517 (673)
T ss_dssp ----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSS
T ss_pred ----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccC
Confidence 3789999999999999999999999999999 999997 568899999999999999
Q ss_pred CC-CCCceeEEEe---cCCCcchHHHHHHHH
Q psy10680 469 RS-TKTGISYTLF---TPLNGNKAQDLIDIL 495 (537)
Q Consensus 469 R~-~~~g~~~~l~---~~~~~~~~~~~~~~l 495 (537)
|. |+.|.+++|+ ++.+...+..+...+
T Consensus 518 R~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 518 RNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp CCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 98 7899999996 466666666655544
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.98 E-value=1.3e-33 Score=292.38 Aligned_cols=289 Identities=16% Similarity=0.125 Sum_probs=187.8
Q ss_pred ccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEE
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIAL 135 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l 135 (537)
.+.+|++++++||||||||++ |++|++..+... +++++
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~-----------------------------------~l~~~l~~~~~~-------~~~~l 41 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRR-----------------------------------FLPQILAECARR-------RLRTL 41 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTT-----------------------------------HHHHHHHHHHHT-------TCCEE
T ss_pred HhhCCCCEEEEcCCCCCHHHH-----------------------------------HHHHHHHHHHhc-------CCeEE
Confidence 467889999999999999999 778888766543 56799
Q ss_pred EEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcC--------ccccccee
Q psy10680 136 VLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESG--------TTNVNRIT 207 (537)
Q Consensus 136 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--------~~~~~~l~ 207 (537)
|++||++|+.|+++.++.+ ++ ....+.. -.++||+.+...+.++ ...+.+++
T Consensus 42 il~Ptr~La~Q~~~~l~~~----~v--~~~~~~~--------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~ 101 (440)
T 1yks_A 42 VLAPTRVVLSEMKEAFHGL----DV--KFHTQAF--------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWE 101 (440)
T ss_dssp EEESSHHHHHHHHHHTTTS----CE--EEESSCC--------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCS
T ss_pred EEcchHHHHHHHHHHHhcC----Ce--EEecccc--------------eeccCCccceeeecccchhHhhhCcccccCcc
Confidence 9999999999999988733 22 1111110 0378887765443322 23478999
Q ss_pred EEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchhH-HHHhhhCCcccccceeeeccchhhhhcCCChHHH
Q psy10680 208 YLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRL-IDFLESGTTNVNRITYLVLDEADRMLDMGFEPQI 286 (537)
Q Consensus 208 liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (537)
+||+||+|++ +..+...+..+...... ...+..++||||..- ..+... ..++..
T Consensus 102 ~vViDEah~~-~~~~~~~~~~~~~~~~~--~~~~~l~~SAT~~~~~~~~~~~----~~~~~~------------------ 156 (440)
T 1yks_A 102 VIIMDEAHFL-DPASIAARGWAAHRARA--NESATILMTATPPGTSDEFPHS----NGEIED------------------ 156 (440)
T ss_dssp EEEETTTTCC-SHHHHHHHHHHHHHHHT--TSCEEEEECSSCTTCCCSSCCC----SSCEEE------------------
T ss_pred EEEEECcccc-CcchHHHHHHHHHHhcc--CCceEEEEeCCCCchhhhhhhc----CCCeeE------------------
Confidence 9999999998 22222222222222211 113334899995311 100000 000000
Q ss_pred HHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhH
Q psy10680 287 RKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVL 366 (537)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (537)
.... . .. ... ...+
T Consensus 157 ---------------~~~~-----------~---------------~~------~~~-------------------~~~~ 170 (440)
T 1yks_A 157 ---------------VQTD-----------I---------------PS------EPW-------------------NTGH 170 (440)
T ss_dssp ---------------EECC-----------C---------------CS------SCC-------------------SSSC
T ss_pred ---------------eeec-----------c---------------Ch------HHH-------------------HHHH
Confidence 0000 0 00 000 0000
Q ss_pred HHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCcc
Q psy10680 367 YFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIK 446 (537)
Q Consensus 367 ~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~ 446 (537)
......+.+.+|||.+...++.+ ...|...++++..+|| .+|..+++.|++|+.+|||||+++++|+|+| ++
T Consensus 171 --~~l~~~~~~~lVF~~s~~~a~~l-~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~ 242 (440)
T 1yks_A 171 --DWILADKRPTAWFLPSIRAANVM-AASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VE 242 (440)
T ss_dssp --HHHHHCCSCEEEECSCHHHHHHH-HHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CS
T ss_pred --HHHHhcCCCEEEEeCCHHHHHHH-HHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ce
Confidence 00111245567999999999998 7788888999999999 4688899999999999999999999999999 99
Q ss_pred EEEE-------------------ecCCCChhhhHhhhhcccCC-CCCceeEEEe---cCCCcchHHHHHHHHHHcccccc
Q psy10680 447 YVVN-------------------YDFPDNTENYVHRIGRTARS-TKTGISYTLF---TPLNGNKAQDLIDILNEAHQFVP 503 (537)
Q Consensus 447 ~Vi~-------------------~d~p~s~~~~~Q~~GRagR~-~~~g~~~~l~---~~~~~~~~~~~~~~l~~~~~~~~ 503 (537)
+||+ ++.|.+..+|+||+||+||. |..|.|++++ ++.+...+..+...+...+.++|
T Consensus 243 ~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~ 322 (440)
T 1yks_A 243 RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVR 322 (440)
T ss_dssp EEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCG
T ss_pred EEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccc
Confidence 9986 88999999999999999997 6899999996 67777778888777766666665
Q ss_pred HH
Q psy10680 504 DR 505 (537)
Q Consensus 504 ~~ 505 (537)
.+
T Consensus 323 ~~ 324 (440)
T 1yks_A 323 GG 324 (440)
T ss_dssp GG
T ss_pred cc
Confidence 44
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.97 E-value=8.8e-32 Score=285.61 Aligned_cols=290 Identities=19% Similarity=0.179 Sum_probs=201.9
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.+...|.++++.+..+++++++||||||||++ |.++++..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a-----------------------------------~~l~ll~~----- 256 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTK-----------------------------------VPAAYAAQ----- 256 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTH-----------------------------------HHHHHHHT-----
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHH-----------------------------------HHHHHHHC-----
Confidence 34556777777777888999999999999998 67766652
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCccccc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVN 204 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~ 204 (537)
+.++||++||++|+.|+++.+.... +..+....|+.. ...+++|+|+||++| +......+.
T Consensus 257 ------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~ 317 (666)
T 3o8b_A 257 ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGG 317 (666)
T ss_dssp ------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTT
T ss_pred ------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccC
Confidence 4569999999999999998877543 445566666644 235789999999997 456667788
Q ss_pred ceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChH
Q psy10680 205 RITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEP 284 (537)
Q Consensus 205 ~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (537)
++++||+||||++ +.++...+..++..++.... ....++|||+... +. ............ +
T Consensus 318 ~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~-~llil~SAT~~~~---i~---~~~p~i~~v~~~---------~-- 378 (666)
T 3o8b_A 318 AYDIIICDECHST-DSTTILGIGTVLDQAETAGA-RLVVLATATPPGS---VT---VPHPNIEEVALS---------N-- 378 (666)
T ss_dssp SCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTC-SEEEEEESSCTTC---CC---CCCTTEEEEECB---------S--
T ss_pred cccEEEEccchhc-CccHHHHHHHHHHhhhhcCC-ceEEEECCCCCcc---cc---cCCcceEEEeec---------c--
Confidence 9999999999765 34466667777776654211 0012569995420 00 000000000000 0
Q ss_pred HHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechh
Q psy10680 285 QIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGY 364 (537)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (537)
... .... .. .. ..
T Consensus 379 ----------------------~~~-----------------i~~~--~~-----------------------~~-~l-- 391 (666)
T 3o8b_A 379 ----------------------TGE-----------------IPFY--GK-----------------------AI-PI-- 391 (666)
T ss_dssp ----------------------CSS-----------------EEET--TE-----------------------EE-CG--
T ss_pred ----------------------cch-----------------hHHH--Hh-----------------------hh-hh--
Confidence 000 0000 00 00 00
Q ss_pred hHHHHHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCC
Q psy10680 365 VLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVED 444 (537)
Q Consensus 365 ~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~ 444 (537)
....+.+.+|||.+++.++.+ +..|...++++..+||+|+..+ |+++..+|||||+++++|||+|
T Consensus 392 ------~~~~~~~vLVFv~Tr~~ae~l-a~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId- 456 (666)
T 3o8b_A 392 ------EAIRGGRHLIFCHSKKKCDEL-AAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD- 456 (666)
T ss_dssp ------GGSSSSEEEEECSCHHHHHHH-HHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-
T ss_pred ------hhccCCcEEEEeCCHHHHHHH-HHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-
Confidence 001345566999999999999 8888888999999999999875 4566679999999999999997
Q ss_pred ccEEE----------Eec-----------CCCChhhhHhhhhcccCCCCCceeEEEecCCCcch--H--HHHHHHHH
Q psy10680 445 IKYVV----------NYD-----------FPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNK--A--QDLIDILN 496 (537)
Q Consensus 445 ~~~Vi----------~~d-----------~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~--~--~~~~~~l~ 496 (537)
+++|| +|| .|.+..+|+||+||+|| |..|. +.|+.+.+... + ..+.+..+
T Consensus 457 V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~ 531 (666)
T 3o8b_A 457 FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYD 531 (666)
T ss_dssp BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHH
T ss_pred CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhc
Confidence 99988 677 89999999999999999 89999 99998877655 3 44444443
No 48
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=3.3e-31 Score=285.73 Aligned_cols=349 Identities=15% Similarity=0.132 Sum_probs=184.5
Q ss_pred CCCChhhhhhhhcccc----C-CcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 44 GKPTSIQAQSWPICLS----G-RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~----~-~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
..|+++|.++++.+.. + +++++++|||+|||++ + ++++.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~-----------------------------------~-~~~~~ 220 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVV-----------------------------------A-FQISW 220 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHH-----------------------------------H-HHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHH-----------------------------------H-HHHHH
Confidence 3799999999998875 4 6799999999999998 3 33444
Q ss_pred hhhcCC--CCCCCCCceEEEEcccHHHHHHHH-HHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHH
Q psy10680 119 HILKMP--KLEEGDGPIALVLAPTRELAQQIQ-AVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDF 195 (537)
Q Consensus 119 ~~~~~~--~~~~~~~~~~lil~Pt~~L~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~ 195 (537)
.+.... ......++++|||+|+++|+.|+. +.++.+.. .+..+.++ ....+.+|+|+||+.|...
T Consensus 221 ~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~ 288 (590)
T 3h1t_A 221 KLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASD 288 (590)
T ss_dssp HHHHTTCCSSCSSSCCCEEEEEC-----------CCTTTCS----SEEECCC----------CCSSCSEEEEEGGGC---
T ss_pred HHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccc
Confidence 444332 001113678999999999999999 77765543 22233222 1234689999999999886
Q ss_pred Hh----cCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchhH-----HHHhhhCCcccccc
Q psy10680 196 LE----SGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRL-----IDFLESGTTNVNRI 266 (537)
Q Consensus 196 l~----~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~~-----~~~l~~~~~~~~~~ 266 (537)
.. ...+....+++||+||||++.... ...+..++..++....+ ++||||.+. ..++.. . +
T Consensus 289 ~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~~~~~l----~lTATP~~~~~~~~~~~f~~-~-----~ 357 (590)
T 3h1t_A 289 ERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFEPAFQI----GMTATPLREDNRDTYRYFGN-P-----I 357 (590)
T ss_dssp ---CCGGGGSCTTSCSEEEESCCC----------CHHHHHHSTTSEEE----EEESSCSCTTTHHHHHHSCS-C-----S
T ss_pred cccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCCcceEE----EeccccccccchhHHHHcCC-c-----e
Confidence 54 223456779999999999987642 24556666666655555 899997532 222211 0 0
Q ss_pred eeeeccchhhhhcCCChHHHHHHHHhhhcC-CCcccceeehh-hhHHHHHHHHhhccccccceeeeecchhhhhhcCCCh
Q psy10680 267 TYLVLDEADRMLDMGFEPQIRKIIQMTRHA-HPVVPVSLFIS-ERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFE 344 (537)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (537)
... .+...+...... ........... ..................... .. .
T Consensus 358 ~~~---------------~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~---~ 409 (590)
T 3h1t_A 358 YTY---------------SLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGE----------YQ---T 409 (590)
T ss_dssp EEE---------------CHHHHHHHTSSCCEEEEEEEETTCC------------------------------------C
T ss_pred Eec---------------CHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccccc----------CC---H
Confidence 000 001101000000 00000000000 000000000000000000000 00 0
Q ss_pred hHHHHHhh-hccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccccccc--------cccccCCCCHHHH
Q psy10680 345 PQIRKIIQ-MTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYR--------AMGIHGDKSQWNR 415 (537)
Q Consensus 345 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~--------~~~~~~~~~~~~r 415 (537)
......+. ..+...+ ...+...+.....+.+.+|||.+...++.+ ...+...+.. +..+||.++. +|
T Consensus 410 ~~~~~~~~~~~r~~~i--~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l-~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r 485 (590)
T 3h1t_A 410 KDFERVIALKARTDAF--AKHLTDFMKRTDRFAKTIVFCVDQEHADEM-RRALNNLNSDLSRKHPDYVARVTSEEGK-IG 485 (590)
T ss_dssp CSHHHHHHHHHTHHHH--HHHHHHHHHHHCTTSEEEEEESSHHHHHHH-HHHHHHHTHHHHTTCTTSEEECSSTTHH-HH
T ss_pred HHhhhHhcChHHHHHH--HHHHHHHHHhcCCCccEEEEECCHHHHHHH-HHHHHHhhhhhhccCCCeEEEEeCCChH-HH
Confidence 00000000 0000000 001111112223456888999999999888 6666554433 4567888764 79
Q ss_pred HHHHHHHhcCCCc---EEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCC--CceeEEEecCC
Q psy10680 416 DQTLRDFRSGYIN---VLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTK--TGISYTLFTPL 483 (537)
Q Consensus 416 ~~~~~~f~~g~~~---iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~--~g~~~~l~~~~ 483 (537)
..+++.|++|+.+ |+|||+++++|+|+|++++||++++|.|+..|+||+||+||.+. .+..+++++--
T Consensus 486 ~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 486 KGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 9999999998766 88999999999999999999999999999999999999999876 44555555543
No 49
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=2e-30 Score=247.40 Aligned_cols=206 Identities=53% Similarity=0.812 Sum_probs=178.3
Q ss_pred eecccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCC
Q psy10680 13 EARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGR 92 (537)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~ 92 (537)
.......+...|....+++.+.+.+. ..||..|+++|.++++.+++|+++++++|||+|||++
T Consensus 20 ~~~~~p~~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~---------------- 82 (242)
T 3fe2_A 20 RGHNCPKPVLNFYEANFPANVMDVIA-RQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS---------------- 82 (242)
T ss_dssp ESSCCCCCCSSTTTTTCCHHHHHHHH-TTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH----------------
T ss_pred eCCCCCCccCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH----------------
Confidence 33334445677888999999999995 5899999999999999999999999999999999999
Q ss_pred CCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchh
Q psy10680 93 SNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKM 172 (537)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
|++|++..+...+......++++||++||++|+.|+.+.++.+....++++..++|+....
T Consensus 83 -------------------~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~ 143 (242)
T 3fe2_A 83 -------------------YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKG 143 (242)
T ss_dssp -------------------HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHH
T ss_pred -------------------HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChH
Confidence 8888888887655444456788999999999999999999998888889999999999988
Q ss_pred HhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-ch
Q psy10680 173 YQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PG 250 (537)
Q Consensus 173 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~ 250 (537)
.+...+..+++|+|+||+++...+......+.++++||+||||++.+++|...+..++..++. .+.. ++||| |.
T Consensus 144 ~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~----~~SAT~~~ 219 (242)
T 3fe2_A 144 PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTL----MWSATWPK 219 (242)
T ss_dssp HHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEE----EEESCCCH
T ss_pred HHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEE----EEEeecCH
Confidence 888888888999999999999999888888999999999999999999999999999988755 4444 89999 66
Q ss_pred hHHHHhhh
Q psy10680 251 RLIDFLES 258 (537)
Q Consensus 251 ~~~~~l~~ 258 (537)
.+..++..
T Consensus 220 ~~~~~~~~ 227 (242)
T 3fe2_A 220 EVRQLAED 227 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555544
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.97 E-value=1.8e-31 Score=277.87 Aligned_cols=281 Identities=16% Similarity=0.154 Sum_probs=182.8
Q ss_pred hhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCce
Q psy10680 54 WPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPI 133 (537)
Q Consensus 54 i~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 133 (537)
...+.+++++++++|||||||++ |++|++..+... +++
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~-----------------------------------~~l~il~~~~~~-------~~~ 52 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRK-----------------------------------ILPQIIKDAIQQ-------RLR 52 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTT-----------------------------------HHHHHHHHHHHT-------TCC
T ss_pred HHHHhcCCcEEEECCCCCCHHHH-----------------------------------HHHHHHHHHHhC-------CCc
Confidence 44567788999999999999999 788888776542 567
Q ss_pred EEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecc
Q psy10680 134 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDE 213 (537)
Q Consensus 134 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE 213 (537)
+||++||++|+.|+++.++. +.+....+.... ....+..+.++|.+.+...+... ..+.++++||+||
T Consensus 53 ~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDE 120 (459)
T 2z83_A 53 TAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDE 120 (459)
T ss_dssp EEEEECSHHHHHHHHHHTTT------SCEEECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESS
T ss_pred EEEECchHHHHHHHHHHhcC------ceEeEEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEEC
Confidence 99999999999999998862 222111111110 01123456778887777655443 4578999999999
Q ss_pred hhhh-----hhCCChHHHHHHHhhccccccccCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHH
Q psy10680 214 ADRM-----LDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 288 (537)
Q Consensus 214 ~h~~-----~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (537)
||++ ...++.. .+ ...+..+.+ ++|||+..-. ........++.. ..
T Consensus 121 aH~~~~~~~~~~~~~~---~~-~~~~~~~~i----l~SAT~~~~~---~~~~~~~~pi~~--~~---------------- 171 (459)
T 2z83_A 121 AHFTDPASIAARGYIA---TK-VELGEAAAI----FMTATPPGTT---DPFPDSNAPIHD--LQ---------------- 171 (459)
T ss_dssp TTCCSHHHHHHHHHHH---HH-HHTTSCEEE----EECSSCTTCC---CSSCCCSSCEEE--EE----------------
T ss_pred CccCCchhhHHHHHHH---HH-hccCCccEE----EEEcCCCcch---hhhccCCCCeEE--ec----------------
Confidence 9983 2211111 11 111223444 8999953110 000000000000 00
Q ss_pred HHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHH
Q psy10680 289 IIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYF 368 (537)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (537)
. ..+. ... . . .+.
T Consensus 172 ------~---~~~~-----~~~---------------------------------~-------------~------~~~- 184 (459)
T 2z83_A 172 ------D---EIPD-----RAW---------------------------------S-------------S------GYE- 184 (459)
T ss_dssp ------C---CCCS-----SCC---------------------------------S-------------S------CCH-
T ss_pred ------c---cCCc-----chh---------------------------------H-------------H------HHH-
Confidence 0 0000 000 0 0 000
Q ss_pred HHHhHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEE
Q psy10680 369 WFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYV 448 (537)
Q Consensus 369 ~~~~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~V 448 (537)
.....+.+.+|||.+...++.+ +..|...++.+..+||. +|..+++.|++|+.+|||||+++++|+|+|+ ++|
T Consensus 185 -~l~~~~~~~LVF~~s~~~~~~l-~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~V 257 (459)
T 2z83_A 185 -WITEYAGKTVWFVASVKMGNEI-AMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRV 257 (459)
T ss_dssp -HHHHCCSCEEEECSCHHHHHHH-HHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEE
T ss_pred -HHHhcCCCEEEEeCChHHHHHH-HHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEE
Confidence 0011244566999999999998 88888889999999984 6778899999999999999999999999999 999
Q ss_pred EE--------------------ecCCCChhhhHhhhhcccCCCC-CceeEEEecCC--CcchHHHH
Q psy10680 449 VN--------------------YDFPDNTENYVHRIGRTARSTK-TGISYTLFTPL--NGNKAQDL 491 (537)
Q Consensus 449 i~--------------------~d~p~s~~~~~Q~~GRagR~~~-~g~~~~l~~~~--~~~~~~~~ 491 (537)
|+ |+.|.|..+|+||+||+||.|. .|.+++|+.+. +...+..+
T Consensus 258 I~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~~~~~~~~~~~ 323 (459)
T 2z83_A 258 IDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHW 323 (459)
T ss_dssp EECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHH
T ss_pred EECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcccccchhhhhhh
Confidence 98 7799999999999999999997 89999999886 44444444
No 51
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.96 E-value=4.3e-31 Score=289.83 Aligned_cols=336 Identities=15% Similarity=0.178 Sum_probs=217.8
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhcccc-CCcEEEEccCCCccccccccccchhccccccCCCCCccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLS-GRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~-~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~ 98 (537)
+...|..+.+++.+.+.+.+ .+ ..|++.|+++++.++. +++++++||||+|||+.
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~-r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl---------------------- 125 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKI-RR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ---------------------- 125 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHH-HT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH----------------------
T ss_pred CCCCccccCCCHHHHHHHHH-hh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH----------------------
Confidence 34568888999999888853 55 6899999999987765 46899999999999973
Q ss_pred ccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh
Q psy10680 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL 178 (537)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 178 (537)
+|++...... ..+.++++++++|+++|+.|+++.+..... ..+....|.....+ ...
T Consensus 126 ---------------lp~ll~~~~~---~~~~g~~ilvl~P~r~La~q~~~~l~~~~~---~~v~~~vG~~i~~~--~~~ 182 (773)
T 2xau_A 126 ---------------IPQFVLFDEM---PHLENTQVACTQPRRVAAMSVAQRVAEEMD---VKLGEEVGYSIRFE--NKT 182 (773)
T ss_dssp ---------------HHHHHHHHHC---GGGGTCEEEEEESCHHHHHHHHHHHHHHTT---CCBTTTEEEEETTE--EEC
T ss_pred ---------------HHHHHHHhcc---ccCCCceEEecCchHHHHHHHHHHHHHHhC---Cchhheecceeccc--ccc
Confidence 2222111100 011256799999999999999887764332 22111111110000 011
Q ss_pred ccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhh-hhhCC-ChHHHHHHHhhccccccccCCceeecC--chhHHH
Q psy10680 179 CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADR-MLDMG-FEPQIRKIIQMTRTRDLCRGAEIVVAT--PGRLID 254 (537)
Q Consensus 179 ~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~-~~~~~-~~~~l~~il~~~~~~~~~~~~~~~saT--p~~~~~ 254 (537)
..+.+|+++||+.+...+... ..+.++++||+||+|. ..+.. ....+..+....+..+.+ ++||| +..+..
T Consensus 183 ~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iI----l~SAT~~~~~l~~ 257 (773)
T 2xau_A 183 SNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKII----IMSATLDAEKFQR 257 (773)
T ss_dssp CTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEE----EEESCSCCHHHHH
T ss_pred CCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEE----EEeccccHHHHHH
Confidence 246789999999999877653 4688999999999996 44321 123333444333333444 89999 344444
Q ss_pred HhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecch
Q psy10680 255 FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDE 334 (537)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (537)
++.... .+..... . + .........+. ........
T Consensus 258 ~~~~~~-------vi~v~gr--~----~---------pv~~~~~~~~~----~~~~~~~l-------------------- 291 (773)
T 2xau_A 258 YFNDAP-------LLAVPGR--T----Y---------PVELYYTPEFQ----RDYLDSAI-------------------- 291 (773)
T ss_dssp HTTSCC-------EEECCCC--C----C---------CEEEECCSSCC----SCHHHHHH--------------------
T ss_pred HhcCCC-------cccccCc--c----c---------ceEEEEecCCc----hhHHHHHH--------------------
Confidence 443211 0000000 0 0 00000000000 00000000
Q ss_pred hhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCceeEEEEeeccCccccccccccc-----------ccccc
Q psy10680 335 ADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSS-----------SLYRA 403 (537)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~l~~~~l~~-----------~~~~~ 403 (537)
..+........+...+|||.....++.+ +..+.. .++.+
T Consensus 292 -----------------------------~~l~~~~~~~~~g~iLVF~~~~~~i~~l-~~~L~~~~~~l~~~~~~~~~~v 341 (773)
T 2xau_A 292 -----------------------------RTVLQIHATEEAGDILLFLTGEDEIEDA-VRKISLEGDQLVREEGCGPLSV 341 (773)
T ss_dssp -----------------------------HHHHHHHHHSCSCEEEEECSCHHHHHHH-HHHHHHHHHHHHHHHCCCCEEE
T ss_pred -----------------------------HHHHHHHHhcCCCCEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCCeEE
Confidence 0000011112345667999999888887 555543 56788
Q ss_pred ccccCCCCHHHHHHHHHHHh-----cCCCcEEEEecccccCCCcCCccEEEEecC------------------CCChhhh
Q psy10680 404 MGIHGDKSQWNRDQTLRDFR-----SGYINVLIASDVASRGLDVEDIKYVVNYDF------------------PDNTENY 460 (537)
Q Consensus 404 ~~~~~~~~~~~r~~~~~~f~-----~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~------------------p~s~~~~ 460 (537)
..+||+|+..+|..+++.|+ +|..+|||||+++++|||+|++++||++|. |.|..+|
T Consensus 342 ~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~ 421 (773)
T 2xau_A 342 YPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASA 421 (773)
T ss_dssp EEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHH
T ss_pred EEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHH
Confidence 99999999999999999999 999999999999999999999999999877 8899999
Q ss_pred HhhhhcccCCCCCceeEEEecCCC
Q psy10680 461 VHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 461 ~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
+||+|||||. ..|.|+.++++.+
T Consensus 422 ~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 422 QQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp HHHHHGGGSS-SSEEEEESSCHHH
T ss_pred HhhccccCCC-CCCEEEEEecHHH
Confidence 9999999999 8899999997644
No 52
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.96 E-value=5.6e-30 Score=270.83 Aligned_cols=392 Identities=16% Similarity=0.152 Sum_probs=215.1
Q ss_pred CCChhhhhhhhcc----ccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 45 KPTSIQAQSWPIC----LSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 45 ~~~~~Q~~ai~~~----~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
.|+++|.+++..+ ..+++++++++||+|||++ .++++..+
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~------------------------------------ai~~i~~~ 80 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQ------------------------------------TIAVFSDA 80 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHH------------------------------------HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHH------------------------------------HHHHHHHH
Confidence 7999999999876 3568999999999999998 33444444
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCc
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGT 200 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~ 200 (537)
.... ....+|||||+ +|+.||.++++.+.+ +.++..++|+... ....+.+|+|+|++.+.+...
T Consensus 81 ~~~~-----~~~~~LIv~P~-~l~~qw~~e~~~~~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~--- 144 (500)
T 1z63_A 81 KKEN-----ELTPSLVICPL-SVLKNWEEELSKFAP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR--- 144 (500)
T ss_dssp HHTT-----CCSSEEEEECS-TTHHHHHHHHHHHCT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---
T ss_pred HhcC-----CCCCEEEEccH-HHHHHHHHHHHHHCC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---
Confidence 3322 13569999995 689999999998876 3455666665422 112467999999998875433
Q ss_pred ccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchh-----H---HHHhhhCCcccccceeeecc
Q psy10680 201 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGR-----L---IDFLESGTTNVNRITYLVLD 272 (537)
Q Consensus 201 ~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~-----~---~~~l~~~~~~~~~~~~~~~~ 272 (537)
.....+++||+||||++.+.. ......+..++..... ++||||.. + ..++...... ...... .
T Consensus 145 l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~~~~~l----~LTaTP~~n~~~el~~ll~~l~p~~~~--~~~~f~-~ 215 (500)
T 1z63_A 145 LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELKSKYRI----ALTGTPIENKVDDLWSIMTFLNPGLLG--SYSEFK-S 215 (500)
T ss_dssp HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSCEEEEE----EECSSCSTTCHHHHHHHHHHHSTTTTC--CHHHHH-T
T ss_pred hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhccCcEE----EEecCCCCCCHHHHHHHHHHhCCCcCC--CHHHHH-H
Confidence 334568999999999997543 3445555555544444 89999732 1 1222110000 000000 0
Q ss_pred chhhhhcCCCh---HHHHHHHHhhhc-----------CCCccc---ceeehhhh-HHHHHHHHhhccccccceeee----
Q psy10680 273 EADRMLDMGFE---PQIRKIIQMTRH-----------AHPVVP---VSLFISER-RDTILHFLESGTTNVNRITYL---- 330 (537)
Q Consensus 273 ~~~~~~~~~~~---~~~~~~~~~~~~-----------~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---- 330 (537)
........+.. ..+......... ..+... ........ .....................
T Consensus 216 ~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 295 (500)
T 1z63_A 216 KFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKG 295 (500)
T ss_dssp TTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHH
T ss_pred HhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchH
Confidence 00000000000 011111111000 000000 00000011 111111111000000000000
Q ss_pred -ecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHH-hHhCceeEEEEeeccCcccccccccccc-cccccccc
Q psy10680 331 -VLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFI-LVAGIERWVFMEINHNGTETKHYGVSSS-LYRAMGIH 407 (537)
Q Consensus 331 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~if~~~~~~~~~l~~~~l~~~-~~~~~~~~ 407 (537)
.......+.+....+.... -.............+...+.. ...+.+.+||+.....+..+ ...+... ++.+..+|
T Consensus 296 ~~~~~l~~lr~~~~~p~l~~-~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l-~~~l~~~~~~~~~~~~ 373 (500)
T 1z63_A 296 MILSTLLKLKQIVDHPALLK-GGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKII-RNIIEKELNTEVPFLY 373 (500)
T ss_dssp HHHHHHHHHHHHTTCTHHHH-CSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHH-HHHHHHHHTCCCCEEE
T ss_pred HHHHHHHHHHHHhCCHHHhc-CccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHH-HHHHHHhhCCCeEEEE
Confidence 0000000000000000000 000000011111222222222 23567889999998888877 6666664 88899999
Q ss_pred CCCCHHHHHHHHHHHhcC-CCc-EEEEecccccCCCcCCccEEEEecCCCChhhhHhhhhcccCCCCCceeE--EEecCC
Q psy10680 408 GDKSQWNRDQTLRDFRSG-YIN-VLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISY--TLFTPL 483 (537)
Q Consensus 408 ~~~~~~~r~~~~~~f~~g-~~~-iLvaT~~l~~Gidi~~~~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~--~l~~~~ 483 (537)
|+++..+|.++++.|++| ..+ +|++|+++++|+|+|.+++||++|+|+++..|.|++||++|.|+.+.+. .++...
T Consensus 374 g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 374 GELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp TTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999988 555 8999999999999999999999999999999999999999999887654 344432
Q ss_pred CcchHHHHHHHHHHcccc
Q psy10680 484 NGNKAQDLIDILNEAHQF 501 (537)
Q Consensus 484 ~~~~~~~~~~~l~~~~~~ 501 (537)
.....+.+.+......
T Consensus 454 --tiee~i~~~~~~K~~l 469 (500)
T 1z63_A 454 --TLEEKIDQLLAFKRSL 469 (500)
T ss_dssp --SHHHHTHHHHTTCSSS
T ss_pred --CHHHHHHHHHHHHHHH
Confidence 3345556665554433
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.96 E-value=2.6e-30 Score=266.97 Aligned_cols=270 Identities=14% Similarity=0.111 Sum_probs=173.7
Q ss_pred cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEc
Q psy10680 59 SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLA 138 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 138 (537)
+|+++++++|||||||++ |++|++..+... +++++|++
T Consensus 1 kg~~~lv~a~TGsGKT~~-----------------------------------~l~~~l~~~~~~-------g~~~lvl~ 38 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRR-----------------------------------VLPQLVREAVKK-------RLRTVILA 38 (431)
T ss_dssp -CCEEEEECCTTSCTTTT-----------------------------------HHHHHHHHHHHT-------TCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHH-----------------------------------HHHHHHHHHHhC-------CCCEEEEC
Confidence 368999999999999999 777787655543 56799999
Q ss_pred ccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhh
Q psy10680 139 PTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRML 218 (537)
Q Consensus 139 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~ 218 (537)
||++|+.|+++.++ ++.+....++... ....+..+.+.|.+.+.+.+.. ...+.++++||+||+|++.
T Consensus 39 Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~ 106 (431)
T 2v6i_A 39 PTRVVASEMYEALR------GEPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLD 106 (431)
T ss_dssp SSHHHHHHHHHHTT------TSCEEEC--------------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCS
T ss_pred cHHHHHHHHHHHhC------CCeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCC
Confidence 99999999998875 3344433333221 1112445667788877766555 4568899999999999962
Q ss_pred hCCChHHHHHHHhhccccccccCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCC
Q psy10680 219 DMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHP 298 (537)
Q Consensus 219 ~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (537)
..+......+...... ...+..++||||......+.. . ...
T Consensus 107 -~~~~~~~~~l~~~~~~--~~~~~l~~SAT~~~~~~~~~~---~---------------------------------~~~ 147 (431)
T 2v6i_A 107 -PASVAARGYIETRVSM--GDAGAIFMTATPPGTTEAFPP---S---------------------------------NSP 147 (431)
T ss_dssp -HHHHHHHHHHHHHHHT--TSCEEEEEESSCTTCCCSSCC---C---------------------------------SSC
T ss_pred -ccHHHHHHHHHHHhhC--CCCcEEEEeCCCCcchhhhcC---C---------------------------------CCc
Confidence 2122222222222211 122334899996431000000 0 000
Q ss_pred cccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHhHhCcee
Q psy10680 299 VVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIER 378 (537)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (537)
.......... ... ...+.. ....+.+.
T Consensus 148 i~~~~~~~~~----------------~~~-----------------------------------~~~~~~--l~~~~~~~ 174 (431)
T 2v6i_A 148 IIDEETRIPD----------------KAW-----------------------------------NSGYEW--ITEFDGRT 174 (431)
T ss_dssp CEEEECCCCS----------------SCC-----------------------------------SSCCHH--HHSCSSCE
T ss_pred eeeccccCCH----------------HHH-----------------------------------HHHHHH--HHcCCCCE
Confidence 0000000000 000 000000 01113456
Q ss_pred EEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccE-----------
Q psy10680 379 WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKY----------- 447 (537)
Q Consensus 379 ~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~----------- 447 (537)
+|||.+...++.+ ...+...++++..+||+ +|.++++.|++|+.+|||||+++++|+|+| +..
T Consensus 175 lVF~~~~~~~~~l-~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v 248 (431)
T 2v6i_A 175 VWFVHSIKQGAEI-GTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPI 248 (431)
T ss_dssp EEECSSHHHHHHH-HHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEE
T ss_pred EEEeCCHHHHHHH-HHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccce
Confidence 6999999999988 77777778999999997 577899999999999999999999999999 544
Q ss_pred ------EEEecCCCChhhhHhhhhcccCCCCC-ceeEEEe
Q psy10680 448 ------VVNYDFPDNTENYVHRIGRTARSTKT-GISYTLF 480 (537)
Q Consensus 448 ------Vi~~d~p~s~~~~~Q~~GRagR~~~~-g~~~~l~ 480 (537)
||+++.|.+..+|+||+||+||.|.. |.++++.
T Consensus 249 ~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 249 LLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred ecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 67889999999999999999999864 4445444
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.96 E-value=8.1e-30 Score=287.03 Aligned_cols=124 Identities=20% Similarity=0.174 Sum_probs=109.6
Q ss_pred HhCceeEEEEeeccCcccccccccc-ccccccccccCCCCHHHHHHHHHHHhcCC--CcEEEEecccccCCCcCCccEEE
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVS-SSLYRAMGIHGDKSQWNRDQTLRDFRSGY--INVLIASDVASRGLDVEDIKYVV 449 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~iLvaT~~l~~Gidi~~~~~Vi 449 (537)
..+.+.+|||.....+..+ ...+. ..|+++..+||+|+..+|..+++.|++|+ ++|||||+++++|+|+|++++||
T Consensus 501 ~~~~k~iVF~~~~~~~~~l-~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI 579 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQL-EQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMV 579 (968)
T ss_dssp TSSSCCCEECSSTHHHHHH-HHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEE
T ss_pred CCCCCEEEEeCcHHHHHHH-HHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEE
Confidence 4577899999999999888 77776 46999999999999999999999999998 99999999999999999999999
Q ss_pred EecCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 450 NYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 450 ~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
++|+|+++..|.|++||+||.|+.|.++++....+......+.+.+.+
T Consensus 580 ~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~ 627 (968)
T 3dmq_A 580 MFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHE 627 (968)
T ss_dssp CSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHh
Confidence 999999999999999999999999987777665555555666666644
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.96 E-value=1.6e-29 Score=271.52 Aligned_cols=272 Identities=16% Similarity=0.147 Sum_probs=187.5
Q ss_pred hccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceE
Q psy10680 55 PICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIA 134 (537)
Q Consensus 55 ~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 134 (537)
...+++++++++||||||||+. ++..+... +..
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~---------------------------------------al~~l~~~--------~~g 182 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYH---------------------------------------AIQKYFSA--------KSG 182 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHH---------------------------------------HHHHHHHS--------SSE
T ss_pred HHhcCCCEEEEEcCCCCCHHHH---------------------------------------HHHHHHhc--------CCe
Confidence 3456788999999999999975 33333332 125
Q ss_pred EEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecch
Q psy10680 135 LVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEA 214 (537)
Q Consensus 135 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~ 214 (537)
+|++||++|+.|+++.++.. ++++..++|+..... ..-.+..+++++|++.+. ....+++||+|||
T Consensus 183 l~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEa 248 (677)
T 3rc3_A 183 VYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEI 248 (677)
T ss_dssp EEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSG
T ss_pred EEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecc
Confidence 89999999999999999865 567788888765411 000123678888876543 3467899999999
Q ss_pred hhhhhCCChHHHHHHHhhccc--cccccCCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHh
Q psy10680 215 DRMLDMGFEPQIRKIIQMTRT--RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 292 (537)
Q Consensus 215 h~~~~~~~~~~l~~il~~~~~--~~~~~~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (537)
|++.+.+++..+..++..++. .+.+ .+|||...+.......... +.... .
T Consensus 249 H~l~d~~~g~~~~~~l~~l~~~~i~il----~~SAT~~~i~~l~~~~~~~---~~v~~---~------------------ 300 (677)
T 3rc3_A 249 QMIRDPARGWAWTRALLGLCAEEVHLC----GEPAAIDLVMELMYTTGEE---VEVRD---Y------------------ 300 (677)
T ss_dssp GGGGCTTTHHHHHHHHHHCCEEEEEEE----ECGGGHHHHHHHHHHHTCC---EEEEE---C------------------
T ss_pred eecCCccchHHHHHHHHccCccceEEE----eccchHHHHHHHHHhcCCc---eEEEE---e------------------
Confidence 999998899999888877763 2222 5556532222222110000 00000 0
Q ss_pred hhcCCCcccceeehhhhHHHHHHHHhhccccccceeeeecchhhhhhcCCChhHHHHHhhhccccceeechhhHHHHHHh
Q psy10680 293 TRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFIL 372 (537)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (537)
....+... .... . . .+ .
T Consensus 301 ----~r~~~l~~---------------------------~~~~---l--------~---------~l------------~ 317 (677)
T 3rc3_A 301 ----KRLTPISV---------------------------LDHA---L--------E---------SL------------D 317 (677)
T ss_dssp ----CCSSCEEE---------------------------CSSC---C--------C---------SG------------G
T ss_pred ----eecchHHH---------------------------HHHH---H--------H---------HH------------H
Confidence 00000000 0000 0 0 00 0
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhc--CCCcEEEEecccccCCCcCCccEEEE
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRS--GYINVLIASDVASRGLDVEDIKYVVN 450 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~iLvaT~~l~~Gidi~~~~~Vi~ 450 (537)
......+|||.+...++.+ +..+...++.+..+||+|+..+|.++++.|++ |..+|||||+++++|||+ ++++||+
T Consensus 318 ~~~~g~iIf~~s~~~ie~l-a~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~ 395 (677)
T 3rc3_A 318 NLRPGDCIVCFSKNDIYSV-SRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIF 395 (677)
T ss_dssp GCCTTEEEECSSHHHHHHH-HHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEE
T ss_pred hcCCCCEEEEcCHHHHHHH-HHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEE
Confidence 0012224899988888888 78888888999999999999999999999999 889999999999999999 8999999
Q ss_pred ecC--------------CCChhhhHhhhhcccCCCCC---ceeEEEe
Q psy10680 451 YDF--------------PDNTENYVHRIGRTARSTKT---GISYTLF 480 (537)
Q Consensus 451 ~d~--------------p~s~~~~~Q~~GRagR~~~~---g~~~~l~ 480 (537)
+|. |.+..+|+||+|||||.|.. |.++.+.
T Consensus 396 ~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 396 YSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp SCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS
T ss_pred CCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe
Confidence 998 77899999999999999965 5655443
No 56
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1.6e-28 Score=228.23 Aligned_cols=192 Identities=32% Similarity=0.504 Sum_probs=165.0
Q ss_pred CCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccc
Q psy10680 22 GYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESS 101 (537)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (537)
..|+.+.+++.+.+.|. .+||..|+++|.++++.+.+++++++++|||+|||++
T Consensus 3 ~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~------------------------- 56 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIF-EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGA------------------------- 56 (206)
T ss_dssp SSGGGSCCCHHHHHHHH-TTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHH-------------------------
T ss_pred CChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHH-------------------------
Confidence 46788899999999995 5999999999999999999999999999999999999
Q ss_pred cccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcchhHhHHHhcc
Q psy10680 102 WWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQTRDLCR 180 (537)
Q Consensus 102 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 180 (537)
|++|++..+.... .++++||++||++|+.|+.+.++.+.... +.++..++|+.........+..
T Consensus 57 ----------~~~~~~~~~~~~~-----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 121 (206)
T 1vec_A 57 ----------YLIPLLERLDLKK-----DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDD 121 (206)
T ss_dssp ----------HHHHHHHHCCTTS-----CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTS
T ss_pred ----------HHHHHHHHhcccC-----CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCC
Confidence 7888877764322 25679999999999999999999887766 7888999999887777777777
Q ss_pred CCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHhhh
Q psy10680 181 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFLES 258 (537)
Q Consensus 181 ~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l~~ 258 (537)
+++|+|+||+++...+......+.++++||+||||++.+.++...+..++..++. .+.+ ++||| |....+++..
T Consensus 122 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l----~~SAT~~~~~~~~~~~ 197 (206)
T 1vec_A 122 TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQIL----LYSATFPLSVQKFMNS 197 (206)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEE----EEESCCCHHHHHHHHH
T ss_pred CCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEE----EEEeeCCHHHHHHHHH
Confidence 8999999999999999888888899999999999999998899999999888763 4444 89999 6555555543
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.95 E-value=1.4e-28 Score=232.50 Aligned_cols=196 Identities=44% Similarity=0.691 Sum_probs=157.6
Q ss_pred CCcce-eeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccc
Q psy10680 22 GYINV-LIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100 (537)
Q Consensus 22 ~~~~~-~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (537)
..|.. ..+++.+.++|. ..||..|+++|.++++.+++|+++++++|||+|||++
T Consensus 19 ~~f~~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~------------------------ 73 (228)
T 3iuy_A 19 CRFKDAFQQYPDLLKSII-RVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLS------------------------ 73 (228)
T ss_dssp CSHHHHHTTCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH------------------------
T ss_pred hhHhhhhccCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHH------------------------
Confidence 34555 688899999995 5899999999999999999999999999999999999
Q ss_pred ccccCccccccchhhHhHhhhcCCC-CCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 101 SWWNNNVVDVKYILPALYHILKMPK-LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 101 ~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|++|++..+..... .....++++||++||++|+.|+.+.++.+. ..++++..++|+.....+...+.
T Consensus 74 -----------~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 141 (228)
T 3iuy_A 74 -----------YLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDIS 141 (228)
T ss_dssp -----------HHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHH
T ss_pred -----------HHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhc
Confidence 77777776654321 112347789999999999999999999875 45788899999988887777777
Q ss_pred cCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHhh
Q psy10680 180 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFLE 257 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l~ 257 (537)
.+++|+|+||+++.+.+......+.++++||+||||++.++++...+..++..++. .+.. ++||| |.....++.
T Consensus 142 ~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l----~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 142 KGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTV----MTSATWPDTVRQLAL 217 (228)
T ss_dssp SCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEE----EEESCCCHHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEE----EEEeeCCHHHHHHHH
Confidence 88999999999999999888888999999999999999999999999999888764 4444 89999 666666554
Q ss_pred h
Q psy10680 258 S 258 (537)
Q Consensus 258 ~ 258 (537)
.
T Consensus 218 ~ 218 (228)
T 3iuy_A 218 S 218 (228)
T ss_dssp T
T ss_pred H
Confidence 4
No 58
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.95 E-value=5.7e-28 Score=232.04 Aligned_cols=203 Identities=38% Similarity=0.585 Sum_probs=167.9
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
+...|..+.+++.+.++|. ..||..|+++|.++++.+++|+++++++|||+|||++
T Consensus 21 ~~~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~----------------------- 76 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNIL-LASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAA----------------------- 76 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTT-TTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH-----------------------
T ss_pred ccCCHhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHH-----------------------
Confidence 4456888999999999995 6999999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCC----CCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhH
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKL----EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQT 175 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~----~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
|++|++..+...... ....++++||++||++|+.|+.+.++.+....++++..++|+.....+.
T Consensus 77 ------------~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 144 (253)
T 1wrb_A 77 ------------FLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQI 144 (253)
T ss_dssp ------------HHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHH
T ss_pred ------------HHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHH
Confidence 777887776543211 1223578999999999999999999998887788999999998888777
Q ss_pred HHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhcccc-ccccCCceeecC-chhHH
Q psy10680 176 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTR-DLCRGAEIVVAT-PGRLI 253 (537)
Q Consensus 176 ~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~-~~~~~~~~~saT-p~~~~ 253 (537)
..+..+++|+|+||+++...+......+.++++||+||||++.+++|...+..++..+... ....+..++||| +..+.
T Consensus 145 ~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~ 224 (253)
T 1wrb_A 145 REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQ 224 (253)
T ss_dssp HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHH
T ss_pred HHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHH
Confidence 7777889999999999999998888888999999999999999999999999998854321 112234489999 55554
Q ss_pred HHhhh
Q psy10680 254 DFLES 258 (537)
Q Consensus 254 ~~l~~ 258 (537)
.+...
T Consensus 225 ~~~~~ 229 (253)
T 1wrb_A 225 KLAAD 229 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 59
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.95 E-value=1.5e-28 Score=230.75 Aligned_cols=192 Identities=34% Similarity=0.480 Sum_probs=162.7
Q ss_pred CCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccc
Q psy10680 22 GYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESS 101 (537)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (537)
..|+.+.+++.+.+.|. .+||..|+++|.++++.+++|+++++++|||+|||++
T Consensus 4 ~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~------------------------- 57 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIK-TLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHA------------------------- 57 (219)
T ss_dssp CCGGGSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHH-------------------------
T ss_pred CCHhhCCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHH-------------------------
Confidence 45788889999999994 6999999999999999999999999999999999999
Q ss_pred cccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc----eeeEEEEEcCcchhHhHHH
Q psy10680 102 WWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM----RIRHACLYGGTSKMYQTRD 177 (537)
Q Consensus 102 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 177 (537)
|++|++..+.... .++++||++||++|+.|+.+.++.+.... ++.+..++|+.........
T Consensus 58 ----------~~~~~l~~l~~~~-----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 122 (219)
T 1q0u_A 58 ----------YLLPIMEKIKPER-----AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK 122 (219)
T ss_dssp ----------HHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC
T ss_pred ----------HHHHHHHHHHhCc-----CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH
Confidence 7888887765332 25679999999999999999999887665 6788889998876665555
Q ss_pred hccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHH
Q psy10680 178 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDF 255 (537)
Q Consensus 178 l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~ 255 (537)
+..+++|+|+||+++...+......+.++++||+||||++.++++...+..++..++. .+.. ++||| |..+.++
T Consensus 123 ~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l----~~SAT~~~~~~~~ 198 (219)
T 1q0u_A 123 LNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQML----VFSATIPEKLKPF 198 (219)
T ss_dssp CSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEE----EEESCCCGGGHHH
T ss_pred cCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEE----EEecCCCHHHHHH
Confidence 5568899999999999999888888899999999999999999999999999888764 3444 89999 6655555
Q ss_pred hhh
Q psy10680 256 LES 258 (537)
Q Consensus 256 l~~ 258 (537)
+..
T Consensus 199 ~~~ 201 (219)
T 1q0u_A 199 LKK 201 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 60
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.95 E-value=4.7e-28 Score=231.67 Aligned_cols=193 Identities=39% Similarity=0.632 Sum_probs=166.4
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
....|..+++++.+.+.|. .+||..|+++|.++++.+++|+++++++|||+|||++
T Consensus 41 ~~~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~----------------------- 96 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACD-QLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGA----------------------- 96 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH-----------------------
T ss_pred ccCCHHHcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhH-----------------------
Confidence 3567888999999999994 6999999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|++|++..+.... .++++||++||++|+.|+.+.++.+....++++..++|+.....+...+.
T Consensus 97 ------------~~~~il~~l~~~~-----~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 159 (249)
T 3ber_A 97 ------------FALPILNALLETP-----QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 159 (249)
T ss_dssp ------------HHHHHHHHHHHSC-----CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH
T ss_pred ------------hHHHHHHHHhcCC-----CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc
Confidence 8888888776543 25679999999999999999999988888899999999988777777777
Q ss_pred cCCcEEEeCCchhHHHHhc-CcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHh
Q psy10680 180 RGAEIVVATPGRLIDFLES-GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFL 256 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~-~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l 256 (537)
.+++|+|+||+++...+.. ....+.++++||+||||++.+.++...+..++..++. .+.. ++||| +..+..++
T Consensus 160 ~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l----~~SAT~~~~v~~~~ 235 (249)
T 3ber_A 160 KKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF----LFSATMTKKVQKLQ 235 (249)
T ss_dssp TCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEE----EEESSCCHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEE----EEeccCCHHHHHHH
Confidence 8899999999999998875 4567889999999999999999999999999988764 4444 89999 55554444
Q ss_pred h
Q psy10680 257 E 257 (537)
Q Consensus 257 ~ 257 (537)
.
T Consensus 236 ~ 236 (249)
T 3ber_A 236 R 236 (249)
T ss_dssp H
T ss_pred H
Confidence 3
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.95 E-value=7e-28 Score=227.92 Aligned_cols=193 Identities=32% Similarity=0.468 Sum_probs=162.1
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
....|+.+.+++.+.+.|. ..||..|+++|.++++.+.+|+++++++|||+|||++
T Consensus 22 ~~~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~----------------------- 77 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLR-AAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCV----------------------- 77 (230)
T ss_dssp --CCGGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH-----------------------
T ss_pred CCCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH-----------------------
Confidence 4467888999999999994 6999999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcchhHhHHHh
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQTRDL 178 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 178 (537)
|++|++..+.... .++++||++||++|+.|+.+.++.+.... ++++..++|+.....+...+
T Consensus 78 ------------~~l~~l~~l~~~~-----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 140 (230)
T 2oxc_A 78 ------------FSTIALDSLVLEN-----LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL 140 (230)
T ss_dssp ------------HHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT
T ss_pred ------------HHHHHHHHHHhcC-----CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc
Confidence 7888887765432 25679999999999999999999887654 78889999988766554444
Q ss_pred ccCCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCC-ChHHHHHHHhhccc-cccccCCceeecC-chhHHHH
Q psy10680 179 CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMG-FEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDF 255 (537)
Q Consensus 179 ~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~-~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~ 255 (537)
.+++|+|+||+++.+.+......+.++++||+||||++.+++ +...+..++..++. .+.. ++||| |..+.++
T Consensus 141 -~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l----~lSAT~~~~~~~~ 215 (230)
T 2oxc_A 141 -KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQML----AVSATYPEFLANA 215 (230)
T ss_dssp -TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEE----EEESCCCHHHHHH
T ss_pred -cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEE----EEEeccCHHHHHH
Confidence 478999999999999998888888999999999999999886 89999999888764 3444 89999 6665555
Q ss_pred hhh
Q psy10680 256 LES 258 (537)
Q Consensus 256 l~~ 258 (537)
+..
T Consensus 216 ~~~ 218 (230)
T 2oxc_A 216 LTK 218 (230)
T ss_dssp HTT
T ss_pred HHH
Confidence 544
No 62
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.8e-28 Score=233.46 Aligned_cols=197 Identities=34% Similarity=0.536 Sum_probs=161.9
Q ss_pred ecCCcceee--ehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcc
Q psy10680 20 RSGYINVLI--ASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSK 97 (537)
Q Consensus 20 ~~~~~~~~~--~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~ 97 (537)
....|..+. +++.+.+.|. .+||..|+++|.++++.++.|++++++||||+|||++
T Consensus 50 ~~~~f~~l~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~--------------------- 107 (262)
T 3ly5_A 50 EDTSFASLCNLVNENTLKAIK-EMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLA--------------------- 107 (262)
T ss_dssp GGGCC-----CCCHHHHHHHH-HTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHH---------------------
T ss_pred ccCChhHhccccCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHH---------------------
Confidence 334444444 8888889985 5999999999999999999999999999999999999
Q ss_pred cccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH
Q psy10680 98 EESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD 177 (537)
Q Consensus 98 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
|++|++..+...... ...++++||++||++|+.|+.+.++.+....+..+..++|+.....+...
T Consensus 108 --------------~~l~~l~~l~~~~~~-~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 172 (262)
T 3ly5_A 108 --------------FLIPAVELIVKLRFM-PRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 172 (262)
T ss_dssp --------------HHHHHHHHHHHTTCC-GGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH
T ss_pred --------------HHHHHHHHHHhcccc-ccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH
Confidence 788888777653211 12367799999999999999999999988888899999999888877777
Q ss_pred hccCCcEEEeCCchhHHHHhcC-cccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHH
Q psy10680 178 LCRGAEIVVATPGRLIDFLESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLID 254 (537)
Q Consensus 178 l~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~ 254 (537)
+..+++|+|+||+++...+... ...+.++++||+||||++.+++|...+..++..++. .+.. ++||| |..+..
T Consensus 173 ~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l----~~SAT~~~~v~~ 248 (262)
T 3ly5_A 173 LGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTM----LFSATQTRKVED 248 (262)
T ss_dssp HHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEE----EECSSCCHHHHH
T ss_pred hcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEE----EEEecCCHHHHH
Confidence 7778999999999999887654 367889999999999999999999999999988865 4444 89999 555555
Q ss_pred Hhh
Q psy10680 255 FLE 257 (537)
Q Consensus 255 ~l~ 257 (537)
+..
T Consensus 249 ~~~ 251 (262)
T 3ly5_A 249 LAR 251 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 63
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.95 E-value=4.9e-28 Score=230.04 Aligned_cols=194 Identities=35% Similarity=0.485 Sum_probs=155.6
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
+...|+.+.+++.+.+.|. .+||..|+++|.++++.+++|+++++++|||+|||++
T Consensus 28 ~~~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~----------------------- 83 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIY-AYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTAT----------------------- 83 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHH-----------------------
T ss_pred ccCChhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH-----------------------
Confidence 4467889999999999994 6999999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|++|++..+.... .++++||++||++|+.|+.+.++.+....++.+..++|+.....+...+.
T Consensus 84 ------------~~l~~l~~l~~~~-----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 146 (237)
T 3bor_A 84 ------------FAISILQQLEIEF-----KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQ 146 (237)
T ss_dssp ------------HHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC------------
T ss_pred ------------HHHHHHHHHHhcC-----CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHh
Confidence 7888887764321 25679999999999999999999998877888888999887666665555
Q ss_pred cC-CcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHh
Q psy10680 180 RG-AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFL 256 (537)
Q Consensus 180 ~~-~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l 256 (537)
.+ ++|+|+||+++...+......+.++++||+||||++.++++...+..++..++. .+.+ ++||| |..+.+.+
T Consensus 147 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i----~~SAT~~~~~~~~~ 222 (237)
T 3bor_A 147 AEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV----LLSATMPTDVLEVT 222 (237)
T ss_dssp -CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEE----EECSSCCHHHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEE----EEEEecCHHHHHHH
Confidence 44 899999999999999888788899999999999999999999999998887754 3444 89999 55555544
Q ss_pred hh
Q psy10680 257 ES 258 (537)
Q Consensus 257 ~~ 258 (537)
..
T Consensus 223 ~~ 224 (237)
T 3bor_A 223 KK 224 (237)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 64
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.95 E-value=1.9e-27 Score=221.18 Aligned_cols=190 Identities=39% Similarity=0.608 Sum_probs=160.2
Q ss_pred CcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccccc
Q psy10680 23 YINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSW 102 (537)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (537)
.|+.+.+++.+.+.|. ..|+..|+++|.++++.+.+|+++++++|||+|||++
T Consensus 2 ~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~-------------------------- 54 (207)
T 2gxq_A 2 EFKDFPLKPEILEALH-GRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLA-------------------------- 54 (207)
T ss_dssp CGGGSCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH--------------------------
T ss_pred ChhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHH--------------------------
Confidence 4778889999999995 5999999999999999999999999999999999999
Q ss_pred ccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCC
Q psy10680 103 WNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGA 182 (537)
Q Consensus 103 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 182 (537)
|++|++..+.... ....++++||++|+++|+.|+.+.++.+... +++..++|+.....+...+..++
T Consensus 55 ---------~~~~~~~~l~~~~--~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 121 (207)
T 2gxq_A 55 ---------FALPIAERLAPSQ--ERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGA 121 (207)
T ss_dssp ---------HHHHHHHHCCCCC--CTTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCC
T ss_pred ---------HHHHHHHHHhhcc--ccCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCC
Confidence 7777777765432 1233678999999999999999999988764 67788889888777767777789
Q ss_pred cEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHh
Q psy10680 183 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFL 256 (537)
Q Consensus 183 ~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l 256 (537)
+|+|+||+++.+.+......+.++++||+||||++.+.++...+..++...+. .+.+ ++||| |.....+.
T Consensus 122 ~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i----~~SAT~~~~~~~~~ 193 (207)
T 2gxq_A 122 DAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTL----LFSATLPSWAKRLA 193 (207)
T ss_dssp SEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEE----EECSSCCHHHHHHH
T ss_pred CEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEE----EEEEecCHHHHHHH
Confidence 99999999999999888888999999999999999999999999999887764 3444 89999 54444433
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.95 E-value=1.6e-27 Score=224.48 Aligned_cols=192 Identities=33% Similarity=0.497 Sum_probs=156.0
Q ss_pred cCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCccccc
Q psy10680 21 SGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100 (537)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (537)
...|..+.+++.+.+.|. .+||..|+++|.++++.+.+|+++++++|||+|||++
T Consensus 13 ~~~f~~l~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~------------------------ 67 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVF-GYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT------------------------ 67 (224)
T ss_dssp CCCGGGGTCCHHHHHHHH-HHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH------------------------
T ss_pred cCChhhcCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHH------------------------
Confidence 356888899999999995 6899999999999999999999999999999999999
Q ss_pred ccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhcc
Q psy10680 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCR 180 (537)
Q Consensus 101 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 180 (537)
|++|++..+.... .++++||++|+++|+.|+.+.++.+....++++..++|+.....+...+.
T Consensus 68 -----------~~~~~l~~l~~~~-----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~- 130 (224)
T 1qde_A 68 -----------FSIAALQRIDTSV-----KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR- 130 (224)
T ss_dssp -----------HHHHHHHHCCTTC-----CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-
T ss_pred -----------HHHHHHHHHhccC-----CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-
Confidence 7888887765432 25679999999999999999999988888899999999877665544443
Q ss_pred CCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHhhh
Q psy10680 181 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFLES 258 (537)
Q Consensus 181 ~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l~~ 258 (537)
.++|+|+||+.+...+......+.++++||+||||++.++++...+..++..++. .+.+ ++||| +..+..++..
T Consensus 131 ~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i----~lSAT~~~~~~~~~~~ 206 (224)
T 1qde_A 131 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV----LLSATMPNDVLEVTTK 206 (224)
T ss_dssp TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEE----EEESSCCHHHHHHHHH
T ss_pred CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEE----EEEeecCHHHHHHHHH
Confidence 4899999999999999888888899999999999999999999999999887754 3344 89999 5555554443
No 66
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=234.15 Aligned_cols=195 Identities=27% Similarity=0.406 Sum_probs=160.5
Q ss_pred ccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccC--CcEEEEccCCCccccccccccchhccccccCCC
Q psy10680 16 LPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSG--RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRS 93 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~--~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~ 93 (537)
.|..+...|..+++++.+.++|. .+||..|+++|.++|+.++.| +++++++|||||||++
T Consensus 86 ~p~~~~~~f~~l~l~~~l~~~l~-~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a----------------- 147 (300)
T 3fmo_B 86 SPLYSVKSFEELRLKPQLLQGVY-AMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAA----------------- 147 (300)
T ss_dssp CCCCCCCCSGGGTCCHHHHHHHH-HTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHH-----------------
T ss_pred CCcCCcCCHhhcCCCHHHHHHHH-HcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHH-----------------
Confidence 35556678999999999999995 599999999999999999988 8999999999999999
Q ss_pred CCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcchh
Q psy10680 94 NTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKM 172 (537)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~ 172 (537)
|++|++..+.... .++++|||+||++|+.|+.+.++.+.... ++.+....|+....
T Consensus 148 ------------------~~lp~l~~l~~~~-----~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~ 204 (300)
T 3fmo_B 148 ------------------FVLAMLSQVEPAN-----KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE 204 (300)
T ss_dssp ------------------HHHHHHHHCCTTS-----CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCC
T ss_pred ------------------HHHHHHHhhhccC-----CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHh
Confidence 8888888775432 36689999999999999999999887654 67788888876543
Q ss_pred HhHHHhccCCcEEEeCCchhHHHHhc-CcccccceeEEEecchhhhhh-CCChHHHHHHHhhccc-cccccCCceeecC-
Q psy10680 173 YQTRDLCRGAEIVVATPGRLIDFLES-GTTNVNRITYLVLDEADRMLD-MGFEPQIRKIIQMTRT-RDLCRGAEIVVAT- 248 (537)
Q Consensus 173 ~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~l~liV~DE~h~~~~-~~~~~~l~~il~~~~~-~~~~~~~~~~saT- 248 (537)
... ..+++|+||||+++..++.+ +...+.++++||+||||++.+ .++...+..++..++. .+.+ ++|||
T Consensus 205 ~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i----~~SAT~ 277 (300)
T 3fmo_B 205 RGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML----LFSATF 277 (300)
T ss_dssp TTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEE----EEESCC
T ss_pred hhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEE----EEeccC
Confidence 322 35789999999999999865 567789999999999999998 6788888888887765 4444 99999
Q ss_pred chhHHHHhhh
Q psy10680 249 PGRLIDFLES 258 (537)
Q Consensus 249 p~~~~~~l~~ 258 (537)
+..+..+...
T Consensus 278 ~~~v~~~a~~ 287 (300)
T 3fmo_B 278 EDSVWKFAQK 287 (300)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 6666555544
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.8e-27 Score=262.48 Aligned_cols=390 Identities=14% Similarity=0.176 Sum_probs=221.2
Q ss_pred CCChhhhhhhhccc----cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 45 KPTSIQAQSWPICL----SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~----~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
.++++|.+++..+. .+++.|++.+||.|||++ .+.++..+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~------------------------------------ai~~i~~l 279 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQ------------------------------------TVAFISWL 279 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHH------------------------------------HHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHH------------------------------------HHHHHHHH
Confidence 78999999997665 778999999999999987 23333333
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHH------------hccCCcEEEeC
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRD------------LCRGAEIVVAT 188 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------l~~~~~Ivv~T 188 (537)
.... ...+.+||||| .+|+.||.+++..+.+ ++++..++|+......... ....++|+|+|
T Consensus 280 ~~~~----~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitT 352 (800)
T 3mwy_W 280 IFAR----RQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTT 352 (800)
T ss_dssp HHHH----SCCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEEC
T ss_pred HHhc----CCCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEec
Confidence 2111 11344899999 6888999999998875 4667777776554433222 12357899999
Q ss_pred CchhHHHHhcCcccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCc-----hhH---HHHhhhCC
Q psy10680 189 PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATP-----GRL---IDFLESGT 260 (537)
Q Consensus 189 p~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp-----~~~---~~~l~~~~ 260 (537)
++.+...... +....+++||+||||++.+. .......+..+...... ++|||| ..+ ..++....
T Consensus 353 y~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~~l~~~~rl----~LTgTPiqN~l~el~~ll~fL~p~~ 424 (800)
T 3mwy_W 353 YEYILKDRAE--LGSIKWQFMAVDEAHRLKNA--ESSLYESLNSFKVANRM----LITGTPLQNNIKELAALVNFLMPGR 424 (800)
T ss_dssp TTHHHHTHHH--HHTSEEEEEEETTGGGGCCS--SSHHHHHHTTSEEEEEE----EECSCCCSSCSHHHHHHHHHHCSCC
T ss_pred HHHHHhhHHH--HhcCCcceeehhhhhhhcCc--hhHHHHHHHHhhhccEE----EeeCCcCCCCHHHHHHHHHHhCccc
Confidence 9998764321 22346899999999999643 34566666666655555 899997 222 22221111
Q ss_pred cccccceeeeccchhhhhcCCChHHHHHHHHhhh--c----CCCccc------ceeehhhhH-HHHHHHHhhccccc---
Q psy10680 261 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR--H----AHPVVP------VSLFISERR-DTILHFLESGTTNV--- 324 (537)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~--- 324 (537)
.... ............ ......+...+.... . .....+ ......... .....++.......
T Consensus 425 ~~~~--~~~~~~~~~~~~-~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~ 501 (800)
T 3mwy_W 425 FTID--QEIDFENQDEEQ-EEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAG 501 (800)
T ss_dssp C-----------CCTTHH-HHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-----
T ss_pred cCch--hhhcccccchhH-HHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 1000 000000000000 000000000000000 0 000000 000000000 00111111000000
Q ss_pred -------------------cceeeeecchhhhhhc------CCChhHHHHHhhhccccceeechhhHHHHHH-hHhCcee
Q psy10680 325 -------------------NRITYLVLDEADRMLD------MGFEPQIRKIIQMTRFNTCVFLGYVLYFWFI-LVAGIER 378 (537)
Q Consensus 325 -------------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 378 (537)
+... +.......... .........++. .......+...+.. ...+.+.
T Consensus 502 ~~~~~~~~l~~l~~Lrk~~~hp~-l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~s~K~~~L~~lL~~~~~~g~kv 575 (800)
T 3mwy_W 502 AKGGHFSLLNIMNELKKASNHPY-LFDNAEERVLQKFGDGKMTRENVLRGLIM-----SSGKMVLLDQLLTRLKKDGHRV 575 (800)
T ss_dssp -----CTHHHHHHHHHHHHHCGG-GSSSHHHHHCCCC----CCSHHHHHHHHH-----TCHHHHHHHHHHHHHTTTTCCE
T ss_pred cccchhhHHHHHHHHHHHhcChh-hhcchHHHHHHhcccccccHHHHHHHhhh-----cChHHHHHHHHHHHHhhCCCeE
Confidence 0000 00000000000 000000000100 11122222222222 2456788
Q ss_pred EEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCC---cEEEEecccccCCCcCCccEEEEecCCC
Q psy10680 379 WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYI---NVLIASDVASRGLDVEDIKYVVNYDFPD 455 (537)
Q Consensus 379 ~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~iLvaT~~l~~Gidi~~~~~Vi~~d~p~ 455 (537)
+||+........+ ...+...|+.+..+||+++..+|..+++.|+++.. .+|++|.++++|+|++.+++||+||+|+
T Consensus 576 LIFsq~~~~ld~L-~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~w 654 (800)
T 3mwy_W 576 LIFSQMVRMLDIL-GDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDW 654 (800)
T ss_dssp EEEESCHHHHHHH-HHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCS
T ss_pred EEEechHHHHHHH-HHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCC
Confidence 9999999888888 88888889999999999999999999999998654 4999999999999999999999999999
Q ss_pred ChhhhHhhhhcccCCCCCceeEE--EecCCCcchHHHHHHHHHH
Q psy10680 456 NTENYVHRIGRTARSTKTGISYT--LFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 456 s~~~~~Q~~GRagR~~~~g~~~~--l~~~~~~~~~~~~~~~l~~ 497 (537)
|+..+.|++||++|.|+...+.+ |+... .....+.+...+
T Consensus 655 np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~--TiEe~i~~~~~~ 696 (800)
T 3mwy_W 655 NPQADLQAMARAHRIGQKNHVMVYRLVSKD--TVEEEVLERARK 696 (800)
T ss_dssp CSHHHHHHHTTTSCSSCCSCEEEEEEEETT--SHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhcCCCceEEEEEEecCC--CHHHHHHHHHHH
Confidence 99999999999999998765544 44433 333444544443
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.95 E-value=3.8e-27 Score=223.79 Aligned_cols=197 Identities=30% Similarity=0.490 Sum_probs=161.9
Q ss_pred ecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEE 99 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (537)
+...|..+.+++.+.+.|. ..||..|+++|.++++.+++|+++++++|||+|||++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~----------------------- 78 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQ-EAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLA----------------------- 78 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHH-HTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH-----------------------
T ss_pred ccCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHH-----------------------
Confidence 4566888999999999995 6899999999999999999999999999999999999
Q ss_pred cccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc
Q psy10680 100 SSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179 (537)
Q Consensus 100 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (537)
|++|++..+..... ....++++||++||++|+.|+.+.++.+....++++..++|+.........+
T Consensus 79 ------------~~~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 144 (236)
T 2pl3_A 79 ------------FLVPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI- 144 (236)
T ss_dssp ------------HHHHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-
T ss_pred ------------HHHHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-
Confidence 77788777654321 1123677999999999999999999999888788999999988766555444
Q ss_pred cCCcEEEeCCchhHHHHhcC-cccccceeEEEecchhhhhhCCChHHHHHHHhhccc-cccccCCceeecC-chhHHHHh
Q psy10680 180 RGAEIVVATPGRLIDFLESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PGRLIDFL 256 (537)
Q Consensus 180 ~~~~Ivv~Tp~~l~~~l~~~-~~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~~~~~~l 256 (537)
.+++|+|+||+++...+... ...+.++++||+||||++.++++...+..++..++. .+.. ++||| +..+..+.
T Consensus 145 ~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l----~~SAT~~~~~~~~~ 220 (236)
T 2pl3_A 145 NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTL----LFSATQTKSVKDLA 220 (236)
T ss_dssp TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEE----EEESSCCHHHHHHH
T ss_pred CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEE----EEEeeCCHHHHHHH
Confidence 57899999999999888654 467789999999999999999999999999988764 3344 99999 55555544
Q ss_pred hh
Q psy10680 257 ES 258 (537)
Q Consensus 257 ~~ 258 (537)
..
T Consensus 221 ~~ 222 (236)
T 2pl3_A 221 RL 222 (236)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=1.9e-26 Score=249.76 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=96.6
Q ss_pred hCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCC---cEEEEecccccCCCcCCccEEEE
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYI---NVLIASDVASRGLDVEDIKYVVN 450 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~iLvaT~~l~~Gidi~~~~~Vi~ 450 (537)
.+.+.+||+........+ ...+...|+.+..+||+++..+|..+++.|++|.. .+|++|+++++|+|++.+++||+
T Consensus 415 ~~~k~lIFs~~~~~~~~l-~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~ 493 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLF-EKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM 493 (644)
T ss_dssp CCCEEEEEESCHHHHHHH-HHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE
T ss_pred CCCEEEEEEccHHHHHHH-HHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE
Confidence 467899999999888887 88888889999999999999999999999999875 48999999999999999999999
Q ss_pred ecCCCChhhhHhhhhcccCCCCCceeE--EEecC
Q psy10680 451 YDFPDNTENYVHRIGRTARSTKTGISY--TLFTP 482 (537)
Q Consensus 451 ~d~p~s~~~~~Q~~GRagR~~~~g~~~--~l~~~ 482 (537)
||+|+++..+.|++||++|.|+...+. .++..
T Consensus 494 ~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~ 527 (644)
T 1z3i_X 494 FDPDWNPANDEQAMARVWRDGQKKTCYIYRLLST 527 (644)
T ss_dssp CSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEET
T ss_pred ECCCCCccHHHHHHHhhhhcCCCCceEEEEEEEC
Confidence 999999999999999999999876544 34444
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=4.2e-27 Score=220.99 Aligned_cols=197 Identities=26% Similarity=0.429 Sum_probs=157.3
Q ss_pred ccceecCCcceeeehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCC
Q psy10680 16 LPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNT 95 (537)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~ 95 (537)
+.......|+.+++++.+.+.|. ..||..|+++|.++++.+.+++++++++|||+|||++
T Consensus 8 ~~~~~~~~f~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~------------------- 67 (220)
T 1t6n_A 8 YVSIHSSGFRDFLLKPELLRAIV-DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAV------------------- 67 (220)
T ss_dssp ------CCSTTSCCCHHHHHHHH-HTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH-------------------
T ss_pred cccccCCCHhhcCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhh-------------------
Confidence 33334466889999999999995 5999999999999999999999999999999999999
Q ss_pred cccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccc-eeeEEEEEcCcchhHh
Q psy10680 96 SKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQ 174 (537)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 174 (537)
|++|++..+.... .++++||++||++|+.|+.+.++.+.... ++++..++|+.....+
T Consensus 68 ----------------~~~~~~~~~~~~~-----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 126 (220)
T 1t6n_A 68 ----------------FVLATLQQLEPVT-----GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKD 126 (220)
T ss_dssp ----------------HHHHHHHHCCCCT-----TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHH
T ss_pred ----------------hhHHHHHhhhccC-----CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHH
Confidence 7888877764321 24579999999999999999999887665 7889999998877666
Q ss_pred HHHhcc-CCcEEEeCCchhHHHHhcCcccccceeEEEecchhhhhhC-CChHHHHHHHhhccc-cccccCCceeecC-ch
Q psy10680 175 TRDLCR-GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDM-GFEPQIRKIIQMTRT-RDLCRGAEIVVAT-PG 250 (537)
Q Consensus 175 ~~~l~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE~h~~~~~-~~~~~l~~il~~~~~-~~~~~~~~~~saT-p~ 250 (537)
...+.. .++|+|+||+.+...+......+.++++||+||||++.++ ++...+..++...+. .+.+ ++||| +.
T Consensus 127 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i----~~SAT~~~ 202 (220)
T 1t6n_A 127 EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVM----MFSATLSK 202 (220)
T ss_dssp HHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEE----EEESCCCT
T ss_pred HHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEE----EEEeecCH
Confidence 555544 5799999999999999888888999999999999999863 566777777776653 3444 89999 44
Q ss_pred hHHHHhh
Q psy10680 251 RLIDFLE 257 (537)
Q Consensus 251 ~~~~~l~ 257 (537)
...+++.
T Consensus 203 ~~~~~~~ 209 (220)
T 1t6n_A 203 EIRPVCR 209 (220)
T ss_dssp TTHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 71
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.94 E-value=7e-27 Score=223.30 Aligned_cols=195 Identities=28% Similarity=0.428 Sum_probs=154.6
Q ss_pred ecCCccee----eehhhhhhcccccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCC
Q psy10680 20 RSGYINVL----IASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNT 95 (537)
Q Consensus 20 ~~~~~~~~----~~~~~~~~~l~~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~ 95 (537)
+...|..+ .+++.+.+.+. ..||..|+++|.++++.+++|+++++++|||+|||++
T Consensus 23 ~~~~f~~l~~~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~------------------- 82 (245)
T 3dkp_A 23 PIATFQQLDQEYKINSRLLQNIL-DAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA------------------- 82 (245)
T ss_dssp CCSSHHHHHHHHCCCHHHHHHHH-HTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH-------------------
T ss_pred cccCHHHhhhccCCCHHHHHHHH-HCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH-------------------
Confidence 44556665 78899999995 5899999999999999999999999999999999999
Q ss_pred cccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhH
Q psy10680 96 SKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQT 175 (537)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
|++|++..+.... ..++++||++||++|+.|+.+.++.+....++++..++|+.......
T Consensus 83 ----------------~~l~~l~~l~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (245)
T 3dkp_A 83 ----------------FSIPILMQLKQPA----NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKF 142 (245)
T ss_dssp ----------------HHHHHHHHHCSCC----SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTT
T ss_pred ----------------HHHHHHHHHhhcc----cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHh
Confidence 8888887775321 23667999999999999999999999888888888777765433322
Q ss_pred H-HhccCCcEEEeCCchhHHHHhcC--cccccceeEEEecchhhhhh---CCChHHHHHHHhhccc--cccccCCceeec
Q psy10680 176 R-DLCRGAEIVVATPGRLIDFLESG--TTNVNRITYLVLDEADRMLD---MGFEPQIRKIIQMTRT--RDLCRGAEIVVA 247 (537)
Q Consensus 176 ~-~l~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~l~liV~DE~h~~~~---~~~~~~l~~il~~~~~--~~~~~~~~~~sa 247 (537)
. ....+++|+|+||+++...+... ...+.++++||+||||++.+ .++...+..++..... .+.. ++||
T Consensus 143 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~SA 218 (245)
T 3dkp_A 143 GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRA----MFSA 218 (245)
T ss_dssp STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEE----EEES
T ss_pred hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEE----EEec
Confidence 2 22457899999999999998765 46788999999999999988 4567777777655432 3344 8999
Q ss_pred C-chhHHHHhhh
Q psy10680 248 T-PGRLIDFLES 258 (537)
Q Consensus 248 T-p~~~~~~l~~ 258 (537)
| |..+..++..
T Consensus 219 T~~~~v~~~~~~ 230 (245)
T 3dkp_A 219 TFAYDVEQWCKL 230 (245)
T ss_dssp SCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 9 6666665554
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.94 E-value=2.9e-26 Score=256.18 Aligned_cols=153 Identities=18% Similarity=0.107 Sum_probs=111.4
Q ss_pred CCCChhhhhhhhcccc--------------CCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCcccc
Q psy10680 44 GKPTSIQAQSWPICLS--------------GRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVD 109 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~--------------~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (537)
..|+++|.+|++.++. +++.+++++||||||++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t--------------------------------- 316 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLT--------------------------------- 316 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHH---------------------------------
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHH---------------------------------
Confidence 3699999999998775 36899999999999998
Q ss_pred ccchhhHhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc-cCCcEEEeC
Q psy10680 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC-RGAEIVVAT 188 (537)
Q Consensus 110 ~~~~l~~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~T 188 (537)
+ ++++..+... ....++|||+|+++|+.|+...+..+... .+.++.+.......+. .+++|+|+|
T Consensus 317 --~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtT 382 (1038)
T 2w00_A 317 --S-FKAARLATEL-----DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTT 382 (1038)
T ss_dssp --H-HHHHHHHTTC-----TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEE
T ss_pred --H-HHHHHHHHhc-----CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEE
Confidence 4 4455433221 12457999999999999999999887643 1223334444444443 468999999
Q ss_pred CchhHHHHhcCc--ccccceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCch
Q psy10680 189 PGRLIDFLESGT--TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPG 250 (537)
Q Consensus 189 p~~l~~~l~~~~--~~~~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~ 250 (537)
|++|...+.... ..+....+||+||||++.. +.....+...++....+ .+||||.
T Consensus 383 iqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p~a~~l----gfTATP~ 439 (1038)
T 2w00_A 383 IQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLKKKFKRYYQF----GFTGTPI 439 (1038)
T ss_dssp HHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHHHHCSSEEEE----EEESSCC
T ss_pred HHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHHHhCCcccEE----EEeCCcc
Confidence 999998876432 2456789999999999764 23355666667665555 9999985
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.91 E-value=8.6e-24 Score=221.12 Aligned_cols=108 Identities=14% Similarity=0.088 Sum_probs=95.9
Q ss_pred hCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcC--------Cc
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVE--------DI 445 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~--------~~ 445 (537)
.+...+|||.+...++.+ +..|...|++...+||+....++..+...++.| .|+|||++++||+|++ ..
T Consensus 473 ~gqpVLVFt~S~e~sE~L-s~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~Gg 549 (822)
T 3jux_A 473 KGQPVLVGTTSIEKSELL-SSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGG 549 (822)
T ss_dssp HTCCEEEEESSHHHHHHH-HHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTS
T ss_pred CCCCEEEEECCHHHHHHH-HHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCC
Confidence 567899999999999999 999999999999999996655555555666555 6999999999999998 56
Q ss_pred cEEEEecCCCChhhhHhhhhcccCCCCCceeEEEecCCC
Q psy10680 446 KYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLN 484 (537)
Q Consensus 446 ~~Vi~~d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~ 484 (537)
.+||+++.|.|...|.||+||+||.|.+|.+++|++..|
T Consensus 550 lhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 550 LCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp CEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred CEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 699999999999999999999999999999999999877
No 74
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.89 E-value=2.5e-23 Score=189.14 Aligned_cols=138 Identities=39% Similarity=0.613 Sum_probs=117.2
Q ss_pred hCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecC
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF 453 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~ 453 (537)
.+.+.+|||.+...+..+ ...|...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++|+
T Consensus 45 ~~~k~lVF~~~~~~~~~l-~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~ 123 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSL-EDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDL 123 (185)
T ss_dssp CCSCEEEEESCHHHHHHH-HHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSC
T ss_pred CCCeEEEEECCHHHHHHH-HHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCC
Confidence 456788999999999998 8888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHHccccccHHHHHHHhc
Q psy10680 454 PDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAK 512 (537)
Q Consensus 454 p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 512 (537)
|.++.+|+||+||+||.|+.|.+++++.+.+...+.++.+.+....+.+|.+|.++++.
T Consensus 124 p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~a~~ 182 (185)
T 2jgn_A 124 PSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYE 182 (185)
T ss_dssp CSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHC-
T ss_pred CCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988764
No 75
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=184.93 Aligned_cols=136 Identities=40% Similarity=0.543 Sum_probs=124.1
Q ss_pred CceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecCC
Q psy10680 375 GIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFP 454 (537)
Q Consensus 375 ~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~p 454 (537)
+.+.+|||.+...+..+ +..|...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|
T Consensus 54 ~~~~lVF~~~~~~~~~l-~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p 132 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAI-HEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMP 132 (191)
T ss_dssp CSCEEEECSCHHHHHHH-HHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCC
T ss_pred CCCEEEEECCHHHHHHH-HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCC
Confidence 44677999999999998 88888889999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHhhhhcccCCCCCceeEEEecCC-CcchHHHHHHHHHHccccccHHHHHHHh
Q psy10680 455 DNTENYVHRIGRTARSTKTGISYTLFTPL-NGNKAQDLIDILNEAHQFVPDRLLLLAA 511 (537)
Q Consensus 455 ~s~~~~~Q~~GRagR~~~~g~~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 511 (537)
.++..|+||+||+||.|+.|.+++|+.+. +......+.+.+....+.+|++|.++++
T Consensus 133 ~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 133 EEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp SSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred CCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcCCHHHHhhcC
Confidence 99999999999999999999999999986 6778899999999999999999986653
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.87 E-value=1.4e-21 Score=211.45 Aligned_cols=117 Identities=20% Similarity=0.280 Sum_probs=104.8
Q ss_pred hCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecC
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF 453 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~ 453 (537)
.+.+.+|||.+...++.+ ...|...|+++..+||+++..+|..+++.|+.|+.+|||||+++++|+|+|++++||++|.
T Consensus 438 ~~~~vlVf~~t~~~ae~L-~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~ 516 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEEL-TSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDA 516 (664)
T ss_dssp TTCEEEEECSSHHHHHHH-HHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTT
T ss_pred cCCEEEEEECCHHHHHHH-HHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCC
Confidence 345667999999999999 8888888999999999999999999999999999999999999999999999999999997
Q ss_pred -----CCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHH
Q psy10680 454 -----PDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLI 492 (537)
Q Consensus 454 -----p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~ 492 (537)
|.+..+|+||+||+||.+ .|.+++++++.+......+.
T Consensus 517 d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 517 DKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp TSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 899999999999999984 89999999887654444333
No 77
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.85 E-value=4.3e-21 Score=204.45 Aligned_cols=133 Identities=21% Similarity=0.273 Sum_probs=112.2
Q ss_pred ccCCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhH
Q psy10680 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118 (537)
Q Consensus 39 ~~~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 118 (537)
+..|+ .|+++|..+++.+++|+ |..+.||+|||++ |.+|++.
T Consensus 74 R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLv-----------------------------------f~Lp~~L 115 (997)
T 2ipc_A 74 RYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLV-----------------------------------ATLAVAL 115 (997)
T ss_dssp HHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHH-----------------------------------HHHHHHH
T ss_pred HHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHH-----------------------------------HHHHHHH
Confidence 45788 99999999999999998 9999999999999 7888854
Q ss_pred hhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchh-HHHHh
Q psy10680 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRL-IDFLE 197 (537)
Q Consensus 119 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~ 197 (537)
..+. |..++|++||++|+.|.+.++..++..+++++..++|+.+... ......++|+||||..| ++.|.
T Consensus 116 ~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLr 185 (997)
T 2ipc_A 116 NALT--------GKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLR 185 (997)
T ss_dssp HHTT--------CSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHH
T ss_pred HHHh--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHH
Confidence 4432 4459999999999999999999999999999999999987543 33345799999999999 77776
Q ss_pred cCc------cccc---ceeEEEecchhhhhh
Q psy10680 198 SGT------TNVN---RITYLVLDEADRMLD 219 (537)
Q Consensus 198 ~~~------~~~~---~l~liV~DE~h~~~~ 219 (537)
... ..++ ++.++|+||+|.++.
T Consensus 186 d~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 186 DNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp HTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred HhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 543 4567 899999999999863
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.85 E-value=1.8e-21 Score=173.31 Aligned_cols=124 Identities=29% Similarity=0.459 Sum_probs=115.3
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEec
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYD 452 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d 452 (537)
..+.+.+|||.+...+..+ ...|...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++|
T Consensus 33 ~~~~~~lVF~~~~~~~~~l-~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQL-TDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYD 111 (163)
T ss_dssp HCCSSEEEECSSHHHHHHH-HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESS
T ss_pred cCCCcEEEEECCHHHHHHH-HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeC
Confidence 3456788999999999998 888888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 453 FPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 453 ~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
.|.++..|+||+||+||.|+.|.+++++.+.+...+.++.+.+..
T Consensus 112 ~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 156 (163)
T 2hjv_A 112 LPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGF 156 (163)
T ss_dssp CCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999988888888776653
No 79
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.85 E-value=6.6e-22 Score=176.58 Aligned_cols=131 Identities=28% Similarity=0.514 Sum_probs=115.3
Q ss_pred hCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecC
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF 453 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~ 453 (537)
.+.+.+|||.+...+..+ +..|...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++|.
T Consensus 29 ~~~~~lVF~~~~~~~~~l-~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEEL-TTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDL 107 (165)
T ss_dssp TCSCEEEEESSHHHHHHH-HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSC
T ss_pred CCCCEEEEECCHHHHHHH-HHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCC
Confidence 456788999999999998 8888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHHccccccHH
Q psy10680 454 PDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDR 505 (537)
Q Consensus 454 p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 505 (537)
|.++.+|+||+||+||.|+.|.+++++.+.+...+..+.+.+...-+.+|..
T Consensus 108 p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 108 PANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp CSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 9999999999999999999999999999999888888888777665555543
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.84 E-value=1.6e-21 Score=175.20 Aligned_cols=133 Identities=21% Similarity=0.370 Sum_probs=117.7
Q ss_pred hCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecC
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF 453 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~ 453 (537)
.+.+.+|||.+...+..+ +..|...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+
T Consensus 30 ~~~~~lVF~~~~~~~~~l-~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIAL-AQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDM 108 (172)
T ss_dssp CCSSEEEECSSHHHHHHH-HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSC
T ss_pred CCCcEEEEECCHHHHHHH-HHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECC
Confidence 445778999999999999 8888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhHhhhhcccCCCCCceeEEEecCC-CcchHHHHHHHHHHccccccHHHH
Q psy10680 454 PDNTENYVHRIGRTARSTKTGISYTLFTPL-NGNKAQDLIDILNEAHQFVPDRLL 507 (537)
Q Consensus 454 p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~l~ 507 (537)
|.++..|+||+||+||.|+.|.+++++.+. +...+..+.+.+...-..+|..+.
T Consensus 109 p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (172)
T 1t5i_A 109 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 163 (172)
T ss_dssp CSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC----
T ss_pred CCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhhc
Confidence 999999999999999999999999999876 456677777777776666776654
No 81
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.84 E-value=4.9e-20 Score=199.25 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=103.7
Q ss_pred hCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecC
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF 453 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~ 453 (537)
.+.+.+|||.+...++.+ ...|...|+++..+||+++..+|..+++.|++|+.+|||||+.+++|+|+|++++||++|.
T Consensus 444 ~~~~vlVf~~t~~~ae~L-~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~ 522 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDL-TDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDA 522 (661)
T ss_dssp TTCEEEEECSSHHHHHHH-HHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTT
T ss_pred cCCeEEEEECCHHHHHHH-HHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCc
Confidence 345666999999999998 8888888999999999999999999999999999999999999999999999999999997
Q ss_pred -----CCChhhhHhhhhcccCCCCCceeEEEecCCCcchHH
Q psy10680 454 -----PDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQ 489 (537)
Q Consensus 454 -----p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~ 489 (537)
|.+...|+||+||+||. ..|.+++++++.+.....
T Consensus 523 d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 523 DKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEI 562 (661)
T ss_dssp TCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHH
T ss_pred ccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHH
Confidence 99999999999999998 789999999987654433
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=3e-21 Score=174.08 Aligned_cols=124 Identities=27% Similarity=0.431 Sum_probs=110.6
Q ss_pred hCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecC
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF 453 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~ 453 (537)
...+.+|||.+...+..+ +..|...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+||.
T Consensus 33 ~~~~~lVF~~~~~~~~~l-~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~ 111 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWL-TVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL 111 (175)
T ss_dssp CCSEEEEECSCHHHHHHH-HHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSC
T ss_pred CCCCEEEEECCHHHHHHH-HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCC
Confidence 345678999999999998 8888888999999999999999999999999999999999999999999999999999999
Q ss_pred C------CChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHHc
Q psy10680 454 P------DNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEA 498 (537)
Q Consensus 454 p------~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~~ 498 (537)
| .+..+|+||+||+||.|+.|.+++++.+.+...+..+.+.++..
T Consensus 112 p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 112 PVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp CC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 9 99999999999999999999999999998887777777776643
No 83
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.84 E-value=2.4e-21 Score=180.94 Aligned_cols=149 Identities=20% Similarity=0.195 Sum_probs=108.2
Q ss_pred CCCCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 41 ~g~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
.+...|+++|.++++.+.+++++++++|||+|||++ ++++++..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~-----------------------------------~~~~~~~~~ 73 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRV-----------------------------------AVYIAKDHL 73 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHH-----------------------------------HHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHH-----------------------------------HHHHHHHHH
Confidence 334599999999999999999999999999999999 677776655
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHH-HHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcC
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQ-IQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESG 199 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~ 199 (537)
..... ...++++||++|+++|+.| +.+.++.+... ++++..++|+.........+..+++|+|+||+.+...+...
T Consensus 74 ~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~ 150 (216)
T 3b6e_A 74 DKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNL 150 (216)
T ss_dssp HHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-
T ss_pred hhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhcc
Confidence 43211 1125679999999999999 77788777554 67788888877665555555567899999999999988764
Q ss_pred c------ccccceeEEEecchhhhhhCCChHHHH
Q psy10680 200 T------TNVNRITYLVLDEADRMLDMGFEPQIR 227 (537)
Q Consensus 200 ~------~~~~~l~liV~DE~h~~~~~~~~~~l~ 227 (537)
. ..+.++++||+||||++.+.++...+.
T Consensus 151 ~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 151 ENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp ------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred CcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 3 567899999999999998765555543
No 84
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.84 E-value=4.7e-21 Score=178.15 Aligned_cols=125 Identities=34% Similarity=0.527 Sum_probs=114.6
Q ss_pred hHhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEe
Q psy10680 372 LVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNY 451 (537)
Q Consensus 372 ~~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~ 451 (537)
...+.+.+|||.+...++.+ ...+...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 28 ~~~~~~~lVF~~~~~~~~~l-~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~ 106 (212)
T 3eaq_A 28 VASPDRAMVFTRTKAETEEI-AQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHY 106 (212)
T ss_dssp HHCCSCEEEECSSHHHHHHH-HHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEES
T ss_pred hCCCCeEEEEeCCHHHHHHH-HHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEEC
Confidence 34566788999999999998 88888889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 452 DFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 452 d~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
|.|.++..|+||+||+||.|+.|.+++++++.+...+..+.+.+..
T Consensus 107 ~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 107 RLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp SCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred CCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998888888877765
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.80 E-value=5.8e-20 Score=178.94 Aligned_cols=124 Identities=33% Similarity=0.524 Sum_probs=111.3
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEec
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYD 452 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d 452 (537)
..+.+.+|||.+...++.+ ...+...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+||
T Consensus 26 ~~~~~~LVF~~t~~~~~~l-~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEI-AQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYR 104 (300)
T ss_dssp HCCSSEEEECSSHHHHHHH-HHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESS
T ss_pred cCCCCEEEEECCHHHHHHH-HHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcC
Confidence 3467788999999999988 888888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 453 FPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 453 ~p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
.|.+...|+||+||+||.|+.|.+++|+.+.+...+..+.+.+..
T Consensus 105 ~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 105 MPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp CCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999998888888877765
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.67 E-value=4.8e-21 Score=171.84 Aligned_cols=123 Identities=28% Similarity=0.464 Sum_probs=114.0
Q ss_pred hCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCCcCCccEEEEecC
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF 453 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gidi~~~~~Vi~~d~ 453 (537)
.+.+.+|||.+...+..+ ...|...++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++|.
T Consensus 29 ~~~~~iVF~~~~~~~~~l-~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~ 107 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHEL-ANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDM 107 (170)
Confidence 345677999999999999 8888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhHhhhhcccCCCCCceeEEEecCCCcchHHHHHHHHHH
Q psy10680 454 PDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 454 p~s~~~~~Q~~GRagR~~~~g~~~~l~~~~~~~~~~~~~~~l~~ 497 (537)
|.++..|+||+||+||.|+.|.+++++.+.+...+..+.+.+..
T Consensus 108 p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 108 PRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 99999999999999999999999999999888877777776654
No 87
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.78 E-value=2.6e-19 Score=174.41 Aligned_cols=150 Identities=19% Similarity=0.109 Sum_probs=116.0
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.|+++|.++++.++++++.++++|||+|||++ ++.++...+...
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~-----------------------------------~~~~~~~~~~~~- 156 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLI-----------------------------------QALLARYYLENY- 156 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHH-----------------------------------HHHHHHHHHHHC-
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHH-----------------------------------HHHHHHHHHHcC-
Confidence 89999999999999888899999999999999 666555544321
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCccccc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVN 204 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~ 204 (537)
++++||++|+++|+.|+.+.++.+....+..+..++++..... ......+|+|+||+.+.+. ....+.
T Consensus 157 ------~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~ 224 (282)
T 1rif_A 157 ------EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFS 224 (282)
T ss_dssp ------SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGG
T ss_pred ------CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHh
Confidence 3469999999999999999999887666677778877765432 2234689999999876543 334578
Q ss_pred ceeEEEecchhhhhhCCChHHHHHHHhhcc-ccccccCCceeecCch
Q psy10680 205 RITYLVLDEADRMLDMGFEPQIRKIIQMTR-TRDLCRGAEIVVATPG 250 (537)
Q Consensus 205 ~l~liV~DE~h~~~~~~~~~~l~~il~~~~-~~~~~~~~~~~saTp~ 250 (537)
++++||+||||++.+ ..+..++..+. ..... ++||||.
T Consensus 225 ~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l----~lSATp~ 263 (282)
T 1rif_A 225 QFGMMMNDECHLATG----KSISSIISGLNNCMFKF----GLSGSLR 263 (282)
T ss_dssp GEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEE----EECSSCC
T ss_pred hCCEEEEECCccCCc----ccHHHHHHHhhcCCeEE----EEeCCCC
Confidence 899999999999874 46667776663 34444 8899974
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.74 E-value=1.6e-17 Score=175.94 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=59.2
Q ss_pred CceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEE--EecccccCCCcCC----ccEE
Q psy10680 375 GIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLI--ASDVASRGLDVED----IKYV 448 (537)
Q Consensus 375 ~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLv--aT~~l~~Gidi~~----~~~V 448 (537)
....+||+.+....+.+ ...+.. .. ...+|.. .++..+++.|+++. .|++ +|..+.+|||+|+ +++|
T Consensus 384 ~g~~lvff~S~~~~~~v-~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 384 SKSVLVFFPSYEMLESV-RIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp SSEEEEEESCHHHHHHH-HTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCEEEEeCCHHHHHHH-HHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 45677999998888777 444443 22 2234443 46788999998864 5776 8899999999997 8999
Q ss_pred EEecCCC----Ch--------------------------hhhHhhhhcccCCCCCceeEEEecC
Q psy10680 449 VNYDFPD----NT--------------------------ENYVHRIGRTARSTKTGISYTLFTP 482 (537)
Q Consensus 449 i~~d~p~----s~--------------------------~~~~Q~~GRagR~~~~g~~~~l~~~ 482 (537)
|+++.|. ++ ..+.|.+||+-|....--+++++++
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 9999772 11 2346899999997544334555655
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=157.73 Aligned_cols=154 Identities=18% Similarity=0.135 Sum_probs=110.9
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.++++|.++++.+.+|++++++||||||||.+ +.++++.......
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~-----------------------------------~~~~~~~~~~~~~ 105 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQ-----------------------------------VPQFILDDFIQND 105 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH-----------------------------------HHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHh-----------------------------------HHHHHhcchhhcC
Confidence 57899999999999999999999999999988 6666666655432
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcc-cceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSR-TMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNV 203 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 203 (537)
. ..+..+++++|+++|+.|+.+.+..... ..+..++....... .....+++|+|+||+++.+.+.. .+
T Consensus 106 ~---~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l 174 (235)
T 3llm_A 106 R---AAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GI 174 (235)
T ss_dssp C---GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CC
T ss_pred C---CCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hh
Confidence 2 1245799999999999999988875443 22222222111100 00114578999999999998875 48
Q ss_pred cceeEEEecchhhh-hhCCCh-HHHHHHHhhccccccccCCceeecC
Q psy10680 204 NRITYLVLDEADRM-LDMGFE-PQIRKIIQMTRTRDLCRGAEIVVAT 248 (537)
Q Consensus 204 ~~l~liV~DE~h~~-~~~~~~-~~l~~il~~~~~~~~~~~~~~~saT 248 (537)
.++++||+||||.+ .+.++. ..+..++...+..+.. ++|||
T Consensus 175 ~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~i----l~SAT 217 (235)
T 3llm_A 175 RGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIV----LMSAT 217 (235)
T ss_dssp TTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEE----EEECS
T ss_pred cCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEE----EEecC
Confidence 89999999999985 444444 4556666655555555 99999
No 90
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.69 E-value=2.6e-17 Score=155.49 Aligned_cols=137 Identities=23% Similarity=0.149 Sum_probs=104.8
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.|+++|.+++..+.+++++++++|||+|||++ ++.++...
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~-----------------------------------a~~~~~~~----- 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHV-----------------------------------AMAAINEL----- 132 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHH-----------------------------------HHHHHHHS-----
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHH-----------------------------------HHHHHHHc-----
Confidence 89999999999999999999999999999998 44444332
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceee-EEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNV 203 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 203 (537)
+.+++|++|+++|+.|+.+.++.+ +++ +..+.|+.. ...+|+|+|++.+...... ..
T Consensus 133 ------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~ 190 (237)
T 2fz4_A 133 ------STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LG 190 (237)
T ss_dssp ------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HT
T ss_pred ------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hc
Confidence 345899999999999999999863 566 667766554 2578999999988765542 23
Q ss_pred cceeEEEecchhhhhhCCChHHHHHHHhhccccccccCCceeecCchh
Q psy10680 204 NRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGR 251 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~~~~~l~~il~~~~~~~~~~~~~~~saTp~~ 251 (537)
.++++||+||||++.+.. +..++..++....+ ++||||.+
T Consensus 191 ~~~~llIiDEaH~l~~~~----~~~i~~~~~~~~~l----~LSATp~r 230 (237)
T 2fz4_A 191 NRFMLLIFDEVHHLPAES----YVQIAQMSIAPFRL----GLTATFER 230 (237)
T ss_dssp TTCSEEEEECSSCCCTTT----HHHHHHTCCCSEEE----EEEESCC-
T ss_pred ccCCEEEEECCccCCChH----HHHHHHhccCCEEE----EEecCCCC
Confidence 468999999999997654 33455555544444 88999864
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.54 E-value=7e-15 Score=141.29 Aligned_cols=122 Identities=14% Similarity=0.132 Sum_probs=88.8
Q ss_pred HhCceeEEEEeeccCccccccccccc-cccccccccCCCCHHHHHHHHHHHhcC-CCc-EEEEecccccCCCcCCccEEE
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSS-SLYRAMGIHGDKSQWNRDQTLRDFRSG-YIN-VLIASDVASRGLDVEDIKYVV 449 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-iLvaT~~l~~Gidi~~~~~Vi 449 (537)
..+.+.+||+........+ ...+.. .|+.+..+||+++..+|..+++.|+++ ..+ +|++|+++++|+|++.+++||
T Consensus 110 ~~~~kvlIFs~~~~~~~~l-~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI 188 (271)
T 1z5z_A 110 DEGDKIAIFTQFVDMGKII-RNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 188 (271)
T ss_dssp HTTCCEEEEESCHHHHHHH-HHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEE
T ss_pred hCCCeEEEEeccHHHHHHH-HHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEE
Confidence 3577888999999888887 777766 489999999999999999999999998 677 789999999999999999999
Q ss_pred EecCCCChhhhHhhhhcccCCCCCcee--EEEecCCCcchHHHHHHHHHH
Q psy10680 450 NYDFPDNTENYVHRIGRTARSTKTGIS--YTLFTPLNGNKAQDLIDILNE 497 (537)
Q Consensus 450 ~~d~p~s~~~~~Q~~GRagR~~~~g~~--~~l~~~~~~~~~~~~~~~l~~ 497 (537)
+||+|+++..|.|++||++|.|+.+.+ +.++... .....+.+.+..
T Consensus 189 ~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~--TiEe~i~~~~~~ 236 (271)
T 1z5z_A 189 HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG--TLEEKIDQLLAF 236 (271)
T ss_dssp ECSCCSCTTTC--------------CCEEEEEEETT--SHHHHHHHHHHH
T ss_pred EECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC--CHHHHHHHHHHH
Confidence 999999999999999999999998765 4444443 333455555544
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.52 E-value=2e-14 Score=152.88 Aligned_cols=131 Identities=21% Similarity=0.075 Sum_probs=100.8
Q ss_pred CCCCCChhhhhhhhc----cccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHh
Q psy10680 42 GYGKPTSIQAQSWPI----CLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPAL 117 (537)
Q Consensus 42 g~~~~~~~Q~~ai~~----~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 117 (537)
|| .|++.|.+++.. +..|+++++.+|||+|||++ |++|++
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~-----------------------------------~l~p~l 44 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLF-----------------------------------SLLVSL 44 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHH-----------------------------------HHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHH-----------------------------------HHHHHH
Confidence 45 799999997764 45789999999999999999 888888
Q ss_pred HhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcch--------------------------
Q psy10680 118 YHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK-------------------------- 171 (537)
Q Consensus 118 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 171 (537)
.. +++++|++||++|+.|+.+.+..+....++++..+.|....
T Consensus 45 ~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~ 113 (551)
T 3crv_A 45 EV-----------KPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVE 113 (551)
T ss_dssp HH-----------CSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCC
T ss_pred hC-----------CCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCcccccc
Confidence 72 56799999999999999999988876667888777663221
Q ss_pred -------hHhH------------------HHhccCCcEEEeCCchhHHHHhcCccc-ccceeEEEecchhhhhh
Q psy10680 172 -------MYQT------------------RDLCRGAEIVVATPGRLIDFLESGTTN-VNRITYLVLDEADRMLD 219 (537)
Q Consensus 172 -------~~~~------------------~~l~~~~~Ivv~Tp~~l~~~l~~~~~~-~~~l~liV~DE~h~~~~ 219 (537)
.... +.....++|||+|+..|.+........ ..+.+++||||||++.+
T Consensus 114 ~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 114 VKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred ccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 1111 222357899999999998765433332 24678999999999987
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.17 E-value=1.6e-11 Score=131.53 Aligned_cols=81 Identities=23% Similarity=0.186 Sum_probs=64.6
Q ss_pred CCChhhhhhhh----ccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhh
Q psy10680 45 KPTSIQAQSWP----ICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI 120 (537)
Q Consensus 45 ~~~~~Q~~ai~----~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 120 (537)
.|++.|.+.+. .+..|+++++.||||+|||++ |++|++..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a-----------------------------------~l~p~l~~~ 47 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIM-----------------------------------ALKSALQYS 47 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHH-----------------------------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHH-----------------------------------HHHHHHHhh
Confidence 68999999985 455789999999999999999 888888876
Q ss_pred hcCCCCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEc
Q psy10680 121 LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167 (537)
Q Consensus 121 ~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 167 (537)
... +++++|++||++|+.|+.+.+..+....++++..+.|
T Consensus 48 ~~~-------~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~g 87 (620)
T 4a15_A 48 SER-------KLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQG 87 (620)
T ss_dssp HHH-------TCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred hhc-------CCeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEEC
Confidence 542 5679999999999999999998876554555555544
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.41 E-value=2.9e-07 Score=98.44 Aligned_cols=138 Identities=21% Similarity=0.252 Sum_probs=78.4
Q ss_pred ChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCC
Q psy10680 47 TSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKL 126 (537)
Q Consensus 47 ~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 126 (537)
++.|+.|++.++.++.+++.|++|||||.+.. ++++.+..+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~---------------------------------~ll~~l~~~~~---- 193 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVA---------------------------------KLLAALIQMAD---- 193 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHH---------------------------------HHHHHHHHTCS----
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHH---------------------------------HHHHHHHHhhh----
Confidence 68899999999999999999999999995411 44555543311
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 127 EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 127 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
..+.++++++||...+.++.+.+......+++..... ...... ...+ ..++-.+|... .+.........+
T Consensus 194 --~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~-~~~~~~--~~Ti---h~ll~~~~~~~--~~~~~~~~~l~~ 263 (608)
T 1w36_D 194 --GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK-KRIPED--ASTL---HRLLGAQPGSQ--RLRHHAGNPLHL 263 (608)
T ss_dssp --SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC-CSCSCC--CBTT---TSCC-------------CTTSCCSC
T ss_pred --cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH-hccchh--hhhh---HhhhccCCCch--HHHhccCCCCCC
Confidence 1255799999999999999887765443333211000 000000 0000 01111222211 011112223378
Q ss_pred eEEEecchhhhhhCCChHHHHHHHhhccc
Q psy10680 207 TYLVLDEADRMLDMGFEPQIRKIIQMTRT 235 (537)
Q Consensus 207 ~liV~DE~h~~~~~~~~~~l~~il~~~~~ 235 (537)
++||+|||+++. ...+..++..++.
T Consensus 264 d~lIIDEAsml~----~~~~~~Ll~~l~~ 288 (608)
T 1w36_D 264 DVLVVDEASMID----LPMMSRLIDALPD 288 (608)
T ss_dssp SEEEECSGGGCB----HHHHHHHHHTCCT
T ss_pred CEEEEechhhCC----HHHHHHHHHhCCC
Confidence 999999999553 3456667766654
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.11 E-value=7.9e-06 Score=87.77 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=54.9
Q ss_pred CCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhc
Q psy10680 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILK 122 (537)
Q Consensus 43 ~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 122 (537)
+..+++.|.+|+..++.+.-++|.||+|+|||.+ +..++..+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~------------------------------------~~~~i~~l~~ 221 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT------------------------------------SATIVYHLAR 221 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH------------------------------------HHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH------------------------------------HHHHHHHHHH
Confidence 3467899999999988878899999999999986 3334444443
Q ss_pred CCCCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q psy10680 123 MPKLEEGDGPIALVLAPTRELAQQIQAVISIF 154 (537)
Q Consensus 123 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 154 (537)
. .+.++++++||..-+.++.+.+...
T Consensus 222 ~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 222 Q------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp S------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred c------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 2 1456999999999999999888653
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.05 E-value=3.6e-06 Score=90.91 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=53.3
Q ss_pred CCCChhhhhhhhccccCC-cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhc
Q psy10680 44 GKPTSIQAQSWPICLSGR-DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILK 122 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~~~-~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 122 (537)
..+++.|.+|+..++..+ -.||+||+|||||.+ +..++..+..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t------------------------------------i~~~I~~l~~ 231 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT------------------------------------VVEIILQAVK 231 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH------------------------------------HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH------------------------------------HHHHHHHHHh
Confidence 357899999999887655 579999999999987 3344444444
Q ss_pred CCCCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q psy10680 123 MPKLEEGDGPIALVLAPTRELAQQIQAVISIF 154 (537)
Q Consensus 123 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 154 (537)
. +.++|+++||..=+.++.+.+...
T Consensus 232 ~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 232 Q-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp T-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred C-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 3 556999999999999999888654
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=1.4e-05 Score=87.97 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=54.5
Q ss_pred CCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhc
Q psy10680 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILK 122 (537)
Q Consensus 43 ~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 122 (537)
+..+++.|.+|+..++.+.-++|.||+|||||.+ +..++..+..
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~------------------------------------i~~~i~~l~~ 401 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT------------------------------------SATIVYHLSK 401 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH------------------------------------HHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH------------------------------------HHHHHHHHHh
Confidence 3467899999999988877889999999999986 3333333332
Q ss_pred CCCCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q psy10680 123 MPKLEEGDGPIALVLAPTRELAQQIQAVISIF 154 (537)
Q Consensus 123 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 154 (537)
. .+.++++++||..-+.++.+.+...
T Consensus 402 ~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 402 I------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp H------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred C------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 1 1456999999999999999988764
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.94 E-value=2.2e-05 Score=86.24 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=54.8
Q ss_pred CCCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhc
Q psy10680 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILK 122 (537)
Q Consensus 43 ~~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 122 (537)
...+++.|.+|+..++.+.-++|.||+|+|||.+ +..++..+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t------------------------------------i~~~i~~l~~ 397 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT------------------------------------SATIVYHLAR 397 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH------------------------------------HHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH------------------------------------HHHHHHHHHH
Confidence 3467899999999988878899999999999976 3344444443
Q ss_pred CCCCCCCCCceEEEEcccHHHHHHHHHHHHHh
Q psy10680 123 MPKLEEGDGPIALVLAPTRELAQQIQAVISIF 154 (537)
Q Consensus 123 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 154 (537)
. .+.++++++||..-+.++.+.+...
T Consensus 398 ~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 398 Q------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp T------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred c------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 2 1456999999999999998888653
No 99
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.89 E-value=3.4e-05 Score=81.64 Aligned_cols=64 Identities=19% Similarity=0.121 Sum_probs=49.7
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.+++.|.+|+..+..++.+++.||+|+|||.+ +..++..+...
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~------------------------------------i~~l~~~l~~~- 231 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT------------------------------------TKAVADLAESL- 231 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH------------------------------------HHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH------------------------------------HHHHHHHHHhc-
Confidence 68999999999999889999999999999975 23333333322
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHH
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVI 151 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~ 151 (537)
+..+++++||...+....+..
T Consensus 232 ------g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 232 ------GLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp ------TCCEEEEESSHHHHHHHHHHH
T ss_pred ------CCeEEEecCcHHHHHHhHhhh
Confidence 556999999998887776544
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.73 E-value=2.3e-05 Score=80.96 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=50.8
Q ss_pred CCCCCCChhhhhhhhccccC----C-cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhh
Q psy10680 41 SGYGKPTSIQAQSWPICLSG----R-DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILP 115 (537)
Q Consensus 41 ~g~~~~~~~Q~~ai~~~~~~----~-~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (537)
..|..+++-|++|+..+... + .++|.|+.|||||.+ +..
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l------------------------------------l~~ 64 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL------------------------------------TKF 64 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH------------------------------------HHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH------------------------------------HHH
Confidence 56778999999999876532 3 899999999999975 334
Q ss_pred HhHhhhcCCCCCCCCCceEEEEcccHHHHHHHHHHH
Q psy10680 116 ALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVI 151 (537)
Q Consensus 116 ~l~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 151 (537)
++..+.... ...+++++||..-+..+.+.+
T Consensus 65 ~~~~l~~~~------~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 65 IIEALISTG------ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp HHHHHHHTT------CCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHhcC------CceEEEecCcHHHHHHHHhhh
Confidence 444444332 125899999998887776655
No 101
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.49 E-value=0.0046 Score=62.37 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=36.5
Q ss_pred EEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEEecc
Q psy10680 134 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDE 213 (537)
Q Consensus 134 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV~DE 213 (537)
.+|++||++++.++.+.+...... .....-|.|.+.++. .......-..++|||||
T Consensus 187 ~lVlTpT~~aa~~l~~kl~~~~~~----------------------~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE 242 (446)
T 3vkw_A 187 DLILVPGRQAAEMIRRRANASGII----------------------VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDE 242 (446)
T ss_dssp CEEEESCHHHHHHHHHHHTTTSCC----------------------CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEET
T ss_pred eEEEeCCHHHHHHHHHHhhhcCcc----------------------ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeC
Confidence 689999999999998887532100 001122666655432 22222223489999999
Q ss_pred hhhh
Q psy10680 214 ADRM 217 (537)
Q Consensus 214 ~h~~ 217 (537)
|-++
T Consensus 243 ~sm~ 246 (446)
T 3vkw_A 243 GLML 246 (446)
T ss_dssp GGGS
T ss_pred cccC
Confidence 9865
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.34 E-value=0.0024 Score=68.80 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=53.0
Q ss_pred CCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcC
Q psy10680 44 GKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKM 123 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 123 (537)
..+++.|.+|+.. .+..++|.|+.|||||.+ ++.-+..+...
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~------------------------------------l~~ri~~l~~~ 49 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRV------------------------------------LVHRIAWLMSV 49 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHH------------------------------------HHHHHHHHHHT
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHH------------------------------------HHHHHHHHHHh
Confidence 3789999999974 356899999999999987 33333334332
Q ss_pred CCCCCCCCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 124 PKLEEGDGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 124 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
.. ....++|++++|+..+.++.+++....+
T Consensus 50 ~~---~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 50 EN---CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp SC---CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred CC---CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 11 1134699999999999999999987643
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.34 E-value=0.0051 Score=61.21 Aligned_cols=71 Identities=13% Similarity=-0.020 Sum_probs=53.2
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.++++|...+..+...+-+++..+-+.|||.+ ...-++..+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l-----------------------------------~a~~~l~~a~~~- 206 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTV-----------------------------------VAIFLAHFVCFN- 206 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHH-----------------------------------HHHHHHHHHHSS-
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHH-----------------------------------HHHHHHHHHHhC-
Confidence 78999999998765556789999999999987 343344333322
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
.+..+++++|+...+..+...++.+..
T Consensus 207 -----~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 207 -----KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp -----SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred -----CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 256799999999999888777776543
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.18 E-value=0.0064 Score=54.02 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
|+-.++.||+|+|||..
T Consensus 3 g~i~vi~G~~gsGKTT~ 19 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTE 19 (184)
T ss_dssp CCEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 45678999999999986
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.92 E-value=0.03 Score=59.45 Aligned_cols=72 Identities=13% Similarity=-0.031 Sum_probs=54.5
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.|+++|...+..+...+.+++.++-|+|||.+ ...-++..+...+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~-----------------------------------~a~~~l~~~~~~~ 207 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTV-----------------------------------VAIFLAHFVCFNK 207 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHH-----------------------------------HHHHHHHHHHTSS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHH-----------------------------------HHHHHHHHHHhCC
Confidence 68999999998775567899999999999987 3333333333321
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhccc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRT 157 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 157 (537)
+..+++++|+...+..+...++.+...
T Consensus 208 ------~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 208 ------DKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp ------SCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred ------CCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 457999999999999988888766544
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.84 E-value=0.0088 Score=52.74 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=23.2
Q ss_pred Chhhhhhhhccc---------cCCcEEEEccCCCccccc
Q psy10680 47 TSIQAQSWPICL---------SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 47 ~~~Q~~ai~~~~---------~~~~vli~apTGsGKT~~ 76 (537)
.+.|.+++..+. .|+.+++.||+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 556777765543 467899999999999965
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.71 E-value=0.011 Score=52.75 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=14.8
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|+=.++.||+|+|||..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ 24 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEE 24 (191)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCEEEEEECCCCCcHHHH
Confidence 345678899999999976
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.50 E-value=0.0091 Score=54.65 Aligned_cols=18 Identities=22% Similarity=-0.008 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+++.||+|+|||..
T Consensus 11 ~G~i~litG~mGsGKTT~ 28 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAE 28 (223)
T ss_dssp CCEEEEEECSTTSCHHHH
T ss_pred CcEEEEEECCCCCcHHHH
Confidence 345678899999999986
No 109
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.46 E-value=0.0062 Score=65.92 Aligned_cols=71 Identities=17% Similarity=0.120 Sum_probs=51.3
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.+++-|.+++... +..++|.|+.|||||.+ +..-+..+....
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~------------------------------------l~~ri~~ll~~~ 43 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRV------------------------------------ITNKIAHLIRGC 43 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHH------------------------------------HHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHH------------------------------------HHHHHHHHHHhc
Confidence 4789999999763 56899999999999987 222222232210
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcc
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSR 156 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 156 (537)
. .....+|+|+.|+..+.++.+++....+
T Consensus 44 ~---~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 44 G---YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp C---CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred C---CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 0 1134599999999999999999987654
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.45 E-value=0.013 Score=50.01 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=16.2
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.++.+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678999999999999964
No 111
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.38 E-value=0.045 Score=58.31 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=64.8
Q ss_pred hCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEec--ccccCCCcCC--ccEEE
Q psy10680 374 AGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASD--VASRGLDVED--IKYVV 449 (537)
Q Consensus 374 ~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~--~l~~Gidi~~--~~~Vi 449 (537)
.....+||+.+....... ...+.....+ ...+++..++...++.|+ +...||+||. .+.+|||+|+ ++.||
T Consensus 447 ~~g~~lvlF~Sy~~l~~v-~~~l~~~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~vi 521 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRV-ENRVSFEHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMII 521 (620)
T ss_dssp HCSCEEEEESCHHHHHHH-TSSCCSCCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEE
T ss_pred CCCCEEEEeCCHHHHHHH-HHHHHhcchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEE
Confidence 345577888888777766 3333322222 455666678899999999 8889999985 9999999985 77899
Q ss_pred EecCCCC-------------------h----------hhhHhhhhcccCCCCCceeEEEecC
Q psy10680 450 NYDFPDN-------------------T----------ENYVHRIGRTARSTKTGISYTLFTP 482 (537)
Q Consensus 450 ~~d~p~s-------------------~----------~~~~Q~~GRagR~~~~g~~~~l~~~ 482 (537)
..+.|-. . ....|.+||+=|....--+++++++
T Consensus 522 I~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 522 LAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp ESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 8886621 1 1236899999997554334455554
No 112
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=95.17 E-value=0.064 Score=51.53 Aligned_cols=104 Identities=8% Similarity=-0.083 Sum_probs=69.5
Q ss_pred HhCceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccccCCC-----cCCccE
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLD-----VEDIKY 447 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~~Gid-----i~~~~~ 447 (537)
..+.+..+|+...+...-+ ..++...++....+.|.....++. -.++...+.+.|+..+-|+| +..++.
T Consensus 123 ~~~~kVLIfsq~t~~LDil-E~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~gin~~~~nl~~aD~ 196 (328)
T 3hgt_A 123 EYETETAIVCRPGRTMDLL-EALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGINFTKYPIKSKARFDM 196 (328)
T ss_dssp TSCEEEEEEECSTHHHHHH-HHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSE
T ss_pred hCCCEEEEEECChhHHHHH-HHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCCCCcCcccccCCCCCE
Confidence 3456666888766666666 888888899999899885443221 12455566666877777776 678999
Q ss_pred EEEecCCCChhh-hHhhhhcccCCC----CCceeEEEecC
Q psy10680 448 VVNYDFPDNTEN-YVHRIGRTARST----KTGISYTLFTP 482 (537)
Q Consensus 448 Vi~~d~p~s~~~-~~Q~~GRagR~~----~~g~~~~l~~~ 482 (537)
||.||..+++.. .+|.+-|+.|.+ +.-.++-++..
T Consensus 197 VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~ 236 (328)
T 3hgt_A 197 LICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAI 236 (328)
T ss_dssp EEECSTTCCTTSHHHHHHHCCC---------CCEEEEEET
T ss_pred EEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCC
Confidence 999999999887 589888888863 23455666654
No 113
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.81 E-value=0.023 Score=61.92 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=51.6
Q ss_pred CCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcC
Q psy10680 44 GKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKM 123 (537)
Q Consensus 44 ~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 123 (537)
..+++-|++|+... +..++|.|+.|||||.+ +..-+..+...
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~v------------------------------------L~~ri~~ll~~ 51 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRV------------------------------------LTHRIAYLMAE 51 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHH------------------------------------HHHHHHHHHHT
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHH------------------------------------HHHHHHHHHHh
Confidence 36899999999763 46899999999999987 22223333332
Q ss_pred CCCCCCCCceEEEEcccHHHHHHHHHHHHHhc
Q psy10680 124 PKLEEGDGPIALVLAPTRELAQQIQAVISIFS 155 (537)
Q Consensus 124 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 155 (537)
.. .....+|+|+.|+..+.++.+++....
T Consensus 52 ~~---~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 52 KH---VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TC---CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cC---CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 11 113459999999999999998887754
No 114
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.061 Score=51.95 Aligned_cols=17 Identities=12% Similarity=-0.128 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+.++++.||+|+|||.+
T Consensus 45 ~~~lli~GpPGTGKT~~ 61 (318)
T 3te6_A 45 NKLFYITNADDSTKFQL 61 (318)
T ss_dssp CCEEEEECCCSHHHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35899999999999976
No 115
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.63 E-value=0.028 Score=50.71 Aligned_cols=17 Identities=24% Similarity=0.036 Sum_probs=14.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
|+=.++.||+|+|||..
T Consensus 28 G~l~vitG~MgsGKTT~ 44 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEE 44 (214)
T ss_dssp CEEEEEECSTTSCHHHH
T ss_pred CEEEEEECCCCCcHHHH
Confidence 44567899999999986
No 116
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.33 E-value=0.11 Score=45.37 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
..++++.||+|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 35899999999999965
No 117
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.31 E-value=0.11 Score=45.32 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++++.||+|+|||..
T Consensus 44 ~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAI 59 (195)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CceEEECCCCCCHHHH
Confidence 5799999999999975
No 118
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.17 E-value=0.056 Score=62.55 Aligned_cols=107 Identities=19% Similarity=0.088 Sum_probs=66.7
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCC
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMP 124 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 124 (537)
.+|+-|.+++..- +++++|.|..|||||.+ .+--++..+....
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~v-----------------------------------l~~ri~~ll~~~~ 52 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAV-----------------------------------LVERMIRKITAEE 52 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHH-----------------------------------HHHHHHHHHSCSS
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHH-----------------------------------HHHHHHHHHhcCC
Confidence 7899999999764 78999999999999988 3323333333211
Q ss_pred CCCCCCCceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHH
Q psy10680 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFL 196 (537)
Q Consensus 125 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l 196 (537)
......+++++++|+..+.++.+++.......... ..........+..-..+-|+|-..|+.-+
T Consensus 53 --~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~~ 116 (1232)
T 3u4q_A 53 --NPIDVDRLLVVTFTNASAAEMKHRIAEALEKELVQ------RPGSLHIRRQLSLLNRASISTLHSFCLQV 116 (1232)
T ss_dssp --SCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHHH------STTCHHHHHHHHHTTTSEEECHHHHHHHH
T ss_pred --CCCCccceEEEeccHHHHHHHHHHHHHHHHHHhhc------CcchHHHHHHHhccCCCeEEeHHHHHHHH
Confidence 01123469999999999999999887643211000 00111111112222456789988887644
No 119
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.81 E-value=0.056 Score=47.95 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=14.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
|+=.++.||+|+|||.-
T Consensus 20 g~l~fiyG~MgsGKTt~ 36 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE 36 (195)
T ss_dssp CEEEEEEECTTSCHHHH
T ss_pred eEEEEEECCCCCcHHHH
Confidence 45678899999999964
No 120
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.65 E-value=0.074 Score=52.75 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+..+++.||+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 45899999999999975
No 121
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.64 E-value=0.047 Score=49.20 Aligned_cols=18 Identities=28% Similarity=0.006 Sum_probs=14.6
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.=.++.||.|+|||..
T Consensus 27 ~G~I~vitG~M~sGKTT~ 44 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEE 44 (219)
T ss_dssp CCEEEEEEECTTSCHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 345568899999999975
No 122
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.57 E-value=0.12 Score=50.01 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+..+++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 35899999999999975
No 123
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.47 E-value=0.067 Score=52.28 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=23.1
Q ss_pred CChhhhhhhhccc----cCC---cEEEEccCCCccccc
Q psy10680 46 PTSIQAQSWPICL----SGR---DLIGIAQTGSGKTLS 76 (537)
Q Consensus 46 ~~~~Q~~ai~~~~----~~~---~vli~apTGsGKT~~ 76 (537)
++|.|.+++..+. +|+ .+++.||+|+|||..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~ 40 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDAL 40 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHH
Confidence 4577777775554 343 489999999999975
No 124
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.28 E-value=0.18 Score=45.94 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
|+=.++.||+|+|||..
T Consensus 19 g~l~v~~G~MgsGKTT~ 35 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTE 35 (234)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred eEEEEEECCCCCcHHHH
Confidence 45578899999999976
No 125
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.70 E-value=0.15 Score=46.63 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.++.+++.||+|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 357899999999999975
No 126
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.55 E-value=0.52 Score=44.21 Aligned_cols=16 Identities=25% Similarity=0.131 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++++.||+|+|||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4899999999999975
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.05 E-value=0.26 Score=50.06 Aligned_cols=16 Identities=31% Similarity=0.245 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..+++.||+|+|||..
T Consensus 131 ~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHL 146 (440)
T ss_dssp CCEEEECSSSSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999975
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.04 E-value=0.27 Score=48.69 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+.+++.||+|+|||..
T Consensus 46 ~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5799999999999975
No 129
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.74 E-value=0.16 Score=49.10 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=13.1
Q ss_pred cceeEEEecchhhhh
Q psy10680 204 NRITYLVLDEADRML 218 (537)
Q Consensus 204 ~~l~liV~DE~h~~~ 218 (537)
.+.++||+||+|.+.
T Consensus 104 ~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 104 GRQKVIVIDEFDRSG 118 (324)
T ss_dssp SCEEEEEEESCCCGG
T ss_pred CCCeEEEEECCcccC
Confidence 367899999999986
No 130
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.53 E-value=0.25 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.030 Sum_probs=17.7
Q ss_pred hccccCCcEEEEccCCCccccc
Q psy10680 55 PICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 55 ~~~~~~~~vli~apTGsGKT~~ 76 (537)
-.+..|.-++|.|++|+|||..
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~l 216 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAF 216 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHH
Confidence 3455667899999999999964
No 131
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=90.92 E-value=0.48 Score=49.63 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=64.7
Q ss_pred CceeEEEEeeccCccccccccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEe--cccccCCCcC-----CccE
Q psy10680 375 GIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIAS--DVASRGLDVE-----DIKY 447 (537)
Q Consensus 375 ~~~~~if~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT--~~l~~Gidi~-----~~~~ 447 (537)
....+||+.+......... ..+..+..-..+++ +...++.|+.....||+|| ..+.+|||+| .++.
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~----~~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMS----RISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp SSEEEEEESCHHHHHHHHT----TCCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred CCCEEEEecCHHHHHHHHH----hcCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 3466788888877766632 12333332223444 3557788864445899998 6999999999 4888
Q ss_pred EEEecCCC---------------------Ch---------hhhHhhhhcccCCCCCceeEEEecCC
Q psy10680 448 VVNYDFPD---------------------NT---------ENYVHRIGRTARSTKTGISYTLFTPL 483 (537)
Q Consensus 448 Vi~~d~p~---------------------s~---------~~~~Q~~GRagR~~~~g~~~~l~~~~ 483 (537)
||..+.|- .. ..+.|.+||+=|..+.--++++++++
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 99877552 11 11358889988875544445556554
No 132
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.30 E-value=0.38 Score=49.05 Aligned_cols=22 Identities=23% Similarity=0.060 Sum_probs=17.9
Q ss_pred hccccCCcEEEEccCCCccccc
Q psy10680 55 PICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 55 ~~~~~~~~vli~apTGsGKT~~ 76 (537)
-.+..|.-++|.|++|+|||..
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl 219 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAF 219 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHH
Confidence 3455667899999999999974
No 133
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=90.22 E-value=0.42 Score=50.67 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=26.5
Q ss_pred CCChhhhhhhhcccc--CCcEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICLS--GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~--~~~vli~apTGsGKT~~ 76 (537)
.+|..|.+++..+.. ....++.|+-|.|||.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~ 208 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSAL 208 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHH
Confidence 689999999987775 33579999999999965
No 134
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.14 E-value=0.15 Score=49.65 Aligned_cols=25 Identities=24% Similarity=-0.027 Sum_probs=19.4
Q ss_pred hhhhccccCCcEEEEccCCCccccc
Q psy10680 52 QSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 52 ~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
+.+-.+..|.-+++.|++|+|||..
T Consensus 38 ~~~gGl~~G~LiiIaG~pG~GKTt~ 62 (338)
T 4a1f_A 38 NYTSGFNKGSLVIIGARPSMGKTSL 62 (338)
T ss_dssp HHHCSBCTTCEEEEEECTTSCHHHH
T ss_pred HHhcCCCCCcEEEEEeCCCCCHHHH
Confidence 3344566777899999999999974
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.94 E-value=0.57 Score=46.08 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+..+++.||+|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45899999999999975
No 136
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.49 E-value=0.65 Score=51.46 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
++++++||+|+|||..
T Consensus 192 ~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCEEEECTTSCHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 4899999999999975
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.30 E-value=0.48 Score=46.83 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=13.8
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999975
No 138
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.07 E-value=0.48 Score=45.97 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++++.||+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 4899999999999975
No 139
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=87.48 E-value=0.42 Score=45.84 Aligned_cols=16 Identities=6% Similarity=-0.251 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
...++.||.|+|||..
T Consensus 19 ~~~Lf~Gp~G~GKtt~ 34 (305)
T 2gno_A 19 ISILINGEDLSYPREV 34 (305)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3789999999999965
No 140
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=87.46 E-value=1.1 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.7
Q ss_pred EEEEcccHHHHHHHHHHHHHhccc
Q psy10680 134 ALVLAPTRELAQQIQAVISIFSRT 157 (537)
Q Consensus 134 ~lil~Pt~~L~~q~~~~~~~~~~~ 157 (537)
+|||+|+...+.|+++.++.+.+.
T Consensus 42 ~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 42 VVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp EEEEESSHHHHHHHHHHHHHTCSS
T ss_pred EEEEeCCHHHHHHHHHHHHhhCCC
Confidence 899999999999999999988653
No 141
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.61 E-value=0.25 Score=41.43 Aligned_cols=19 Identities=11% Similarity=-0.036 Sum_probs=16.4
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..+.++++.||+|+|||..
T Consensus 25 ~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp TCSSCEEEEEETTCCHHHH
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 4557999999999999976
No 142
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.36 E-value=0.29 Score=41.10 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=16.5
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..+.++++.||+|+|||..
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4557999999999999976
No 143
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=85.91 E-value=2.8 Score=36.97 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=30.5
Q ss_pred cceeEEEecchhhhhhCC--ChHHHHHHHhhccccccccCCceeecC--chhHHHHhh
Q psy10680 204 NRITYLVLDEADRMLDMG--FEPQIRKIIQMTRTRDLCRGAEIVVAT--PGRLIDFLE 257 (537)
Q Consensus 204 ~~l~liV~DE~h~~~~~~--~~~~l~~il~~~~~~~~~~~~~~~saT--p~~~~~~l~ 257 (537)
.++++||+||+-.....+ -.+.+..++...+..... +++.- |..+.+..+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~v----IlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTV----IITGRGCHRDILDLAD 172 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEE----EEECSSCCHHHHHHCS
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEE----EEECCCCcHHHHHhCc
Confidence 679999999998765443 234555566555544333 55554 666655443
No 144
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.50 E-value=0.49 Score=56.45 Aligned_cols=19 Identities=32% Similarity=0.167 Sum_probs=16.6
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
.+++++++.+|+|+|||..
T Consensus 1425 ~~g~~vll~GppGtGKT~L 1443 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTL 1443 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCeEEEEECCCCCCHHHH
Confidence 3468999999999999986
No 145
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=85.40 E-value=0.37 Score=47.21 Aligned_cols=20 Identities=30% Similarity=0.204 Sum_probs=16.5
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|+-+++.||+|+|||..
T Consensus 58 l~~G~iv~I~G~pGsGKTtL 77 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTV 77 (349)
T ss_dssp EETTSEEEEEESTTSSHHHH
T ss_pred ccCCeEEEEECCCCCCHHHH
Confidence 44557799999999999975
No 146
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.38 E-value=2.2 Score=41.15 Aligned_cols=19 Identities=26% Similarity=0.067 Sum_probs=15.9
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..|.-+++.||+|+|||..
T Consensus 105 ~~G~i~~i~G~~GsGKT~l 123 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQL 123 (324)
T ss_dssp ETTSEEEEEESTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHhHH
Confidence 3456789999999999975
No 147
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=85.28 E-value=5.4 Score=34.21 Aligned_cols=72 Identities=14% Similarity=0.064 Sum_probs=52.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++++..+..++..+... ++.+..++|+.+..++...+ ....+|+|+|.. + ..-+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~-~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----C-ARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----C-CTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----h-hcCCCcccC
Confidence 567999999999999999888743 67788999998876654443 236789999942 1 223466778
Q ss_pred eEEEec
Q psy10680 207 TYLVLD 212 (537)
Q Consensus 207 ~liV~D 212 (537)
++||.-
T Consensus 104 ~~Vi~~ 109 (175)
T 2rb4_A 104 TIVVNF 109 (175)
T ss_dssp EEEEES
T ss_pred CEEEEe
Confidence 888853
No 148
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.97 E-value=0.93 Score=43.42 Aligned_cols=19 Identities=32% Similarity=0.032 Sum_probs=15.3
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+-.| -+++.+|+|+|||..
T Consensus 26 l~~G-iteI~G~pGsGKTtL 44 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNF 44 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHH
T ss_pred CcCC-eEEEECCCCCCHHHH
Confidence 3445 689999999999975
No 149
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.53 E-value=0.42 Score=46.86 Aligned_cols=18 Identities=39% Similarity=0.326 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-++|.||+|+|||..
T Consensus 60 ~G~i~~I~GppGsGKSTL 77 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL 77 (356)
T ss_dssp TTEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999974
No 150
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.03 E-value=0.25 Score=49.18 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+++|+.||+|+|||+.
T Consensus 182 prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CCCEEEESCSSSSHHHH
T ss_pred CCceEEeCCCCCCHHHH
Confidence 36899999999999976
No 151
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=83.45 E-value=4.4 Score=34.34 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=52.2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++++.-+..+++.+... ++.+..++|+.+..++...+ ....+|+|+|. .+. .-+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA-RGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT-TTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCchhcC
Confidence 446899999999999999988754 67788999998766554433 23678999993 222 23456678
Q ss_pred eEEEecc
Q psy10680 207 TYLVLDE 213 (537)
Q Consensus 207 ~liV~DE 213 (537)
++||.-+
T Consensus 105 ~~Vi~~~ 111 (163)
T 2hjv_A 105 SLVINYD 111 (163)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8877644
No 152
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=83.41 E-value=6 Score=34.66 Aligned_cols=73 Identities=15% Similarity=0.239 Sum_probs=52.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
++++||.++++.-+..++..++.. ++.+..++|+.+..++...+ ....+|+|+|. .+.. -+++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~-Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK-GLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT-TCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc-CCCcccC
Confidence 346999999999999999988754 67788999998766554443 23678999993 2222 3456778
Q ss_pred eEEEecc
Q psy10680 207 TYLVLDE 213 (537)
Q Consensus 207 ~liV~DE 213 (537)
++||.=+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8777633
No 153
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.37 E-value=0.27 Score=49.52 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+++|+.||+|+|||+.
T Consensus 215 prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CCeeEEECcCCCCHHHH
Confidence 36899999999999975
No 154
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.95 E-value=0.26 Score=49.65 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+.+|+.||+|+|||+.
T Consensus 215 prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 37899999999999975
No 155
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=81.90 E-value=1.6 Score=43.80 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+.-++++||+|+|||.+
T Consensus 97 ~~vI~lvG~~GsGKTTt 113 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTT 113 (433)
T ss_dssp SEEEEECCCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34678899999999976
No 156
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=81.75 E-value=5.3 Score=34.24 Aligned_cols=73 Identities=8% Similarity=0.016 Sum_probs=52.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++++.-+..++..+... ++.+..++|+.+..++...+ .....|+|+|.. -..-+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhC
Confidence 456999999999999999988754 67788899998766554443 236789999952 1123456778
Q ss_pred eEEEecc
Q psy10680 207 TYLVLDE 213 (537)
Q Consensus 207 ~liV~DE 213 (537)
++||.-+
T Consensus 101 ~~Vi~~d 107 (172)
T 1t5i_A 101 NIAFNYD 107 (172)
T ss_dssp SEEEESS
T ss_pred CEEEEEC
Confidence 8877644
No 157
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.28 E-value=0.34 Score=48.72 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+.+++.||+|+|||+.
T Consensus 206 prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CCEEEEESCTTTTHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 36899999999999975
No 158
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=80.52 E-value=2.4 Score=40.70 Aligned_cols=18 Identities=33% Similarity=0.051 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+++.||+|+|||..
T Consensus 97 ~g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp TTEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 446789999999999975
No 159
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=80.51 E-value=0.93 Score=43.48 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
++++++.||||+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57999999999999975
No 160
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=80.07 E-value=1.3 Score=39.18 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+++++.||+|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999975
No 161
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=79.86 E-value=7.1 Score=33.03 Aligned_cols=73 Identities=11% Similarity=0.237 Sum_probs=51.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
++++||.++++.-+..++..+... ++.+..++|+.+..++...+ .....|+|+|. .+. .-+++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~-~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA-RGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT-TTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh-cCCCcccC
Confidence 456999999999999999888753 56788899998766554443 23678999994 222 23456677
Q ss_pred eEEEecc
Q psy10680 207 TYLVLDE 213 (537)
Q Consensus 207 ~liV~DE 213 (537)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (165)
T 1fuk_A 100 SLVINYD 106 (165)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 7777643
No 162
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=79.81 E-value=7 Score=34.79 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=51.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++++.-+..+++.+... ++.+..++|+.+..++...+ ....+|+|+|. .+. .-+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA-RGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT-CSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh-cCCCCccC
Confidence 456999999999999999888753 67788999998876665443 23578999994 222 23456778
Q ss_pred eEEEe
Q psy10680 207 TYLVL 211 (537)
Q Consensus 207 ~liV~ 211 (537)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88774
No 163
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.69 E-value=0.45 Score=47.62 Aligned_cols=16 Identities=38% Similarity=0.546 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+.+|+.||+|+|||+.
T Consensus 217 rGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLL 232 (437)
T ss_dssp SEEEEESSTTTTHHHH
T ss_pred CCCceECCCCchHHHH
Confidence 6899999999999975
No 164
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=79.63 E-value=1.2 Score=44.98 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
...+++|.|+||+|||..
T Consensus 52 ~~~h~~i~G~tGsGKs~~ 69 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL 69 (437)
T ss_dssp GGGCEEEEECTTSSHHHH
T ss_pred CcceEEEECCCCCCHHHH
Confidence 457999999999999976
No 165
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=79.39 E-value=2.8 Score=38.20 Aligned_cols=70 Identities=60% Similarity=0.872 Sum_probs=54.5
Q ss_pred CceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHH
Q psy10680 242 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311 (537)
Q Consensus 242 ~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (537)
+.++.+||+++.+.+.........+..+++||++.+.+.++.+.+..+............++........
T Consensus 153 ~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~ 222 (242)
T 3fe2_A 153 VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 222 (242)
T ss_dssp CSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHH
T ss_pred CCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHH
Confidence 4489999999999998877778889999999999999999999998887776554444445554444333
No 166
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=78.29 E-value=1.1 Score=40.23 Aligned_cols=32 Identities=25% Similarity=0.180 Sum_probs=26.7
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
.-+.-|..++..+..|.-+.+.||.|+|||..
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 34455778888888999999999999999965
No 167
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=78.15 E-value=1.7 Score=39.52 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.1
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+++.||+|+|||..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl 39 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIF 39 (247)
T ss_dssp EETTCEEEEEECTTSSHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 45677899999999999975
No 168
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=77.67 E-value=3.7 Score=41.34 Aligned_cols=16 Identities=38% Similarity=0.466 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.-++++|++|+|||.+
T Consensus 101 ~vIlivG~~G~GKTTt 116 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTT 116 (443)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 4678899999999976
No 169
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.67 E-value=0.45 Score=48.08 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+++|+.||+|+|||+.
T Consensus 243 prGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSEEEECSCTTSSHHHH
T ss_pred CCceEeeCCCCCcHHHH
Confidence 47899999999999975
No 170
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=76.75 E-value=0.97 Score=49.23 Aligned_cols=85 Identities=12% Similarity=0.097 Sum_probs=44.3
Q ss_pred ceecCCcceeeehhhhhhcccccCCC--CCCChhhhhhhhccccCCcEEEEccCCCccccccccccchhccccccCCCCC
Q psy10680 18 YFRSGYINVLIASDVASRGLGKNSGY--GKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNT 95 (537)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~g~--~~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~ 95 (537)
..+...|...+--..+.+.|.+..-+ +.|..++. + .+...+.+++.||+|+|||+.+ --+..-....|+..+.
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~--~-g~~~~~gvLl~GPPGtGKT~lA--kaiA~e~~~~f~~v~~ 544 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLK--F-GMTPSKGVLFYGPPGCGKTLLA--KAIANECQANFISIKG 544 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSS--S-CCCCCSCCEEESSTTSSHHHHH--HHHHHTTTCEEEECCH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHh--c-CCCCCceEEEecCCCCCchHHH--HHHHHHhCCceEEecc
Confidence 34556777777666776666543322 22222221 1 1233468999999999999752 1122222333333333
Q ss_pred cccccccccCcc
Q psy10680 96 SKEESSWWNNNV 107 (537)
Q Consensus 96 ~~~~~~~~~~~~ 107 (537)
+.-..+|++.++
T Consensus 545 ~~l~s~~vGese 556 (806)
T 3cf2_A 545 PELLTMWFGESE 556 (806)
T ss_dssp HHHHTTTCSSCH
T ss_pred chhhccccchHH
Confidence 333444444444
No 171
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=76.75 E-value=2.1 Score=46.67 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=58.6
Q ss_pred HhCceeEEEEeeccCccccc---cccccccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccCCCcCCccEE
Q psy10680 373 VAGIERWVFMEINHNGTETK---HYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASD-VASRGLDVEDIKYV 448 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~---~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~-~l~~Gidi~~~~~V 448 (537)
..+...++.+.+..-+.+.. ...+...++++..+||+++..++...++.+.+|..+|+|+|. .+...+++.++.+|
T Consensus 415 ~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lV 494 (780)
T 1gm5_A 415 EAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLV 494 (780)
T ss_dssp HHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEE
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceE
Confidence 35566666666655555442 233344578899999999999999999999999999999996 44567888888888
Q ss_pred EE
Q psy10680 449 VN 450 (537)
Q Consensus 449 i~ 450 (537)
|.
T Consensus 495 VI 496 (780)
T 1gm5_A 495 II 496 (780)
T ss_dssp EE
T ss_pred Ee
Confidence 84
No 172
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=75.37 E-value=0.81 Score=47.25 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=17.3
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.+++++||||||||..
T Consensus 257 v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHH
T ss_pred HhCCCEEEEECCCCCCHHHH
Confidence 45778999999999999965
No 173
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=74.85 E-value=0.85 Score=42.57 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=17.2
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.++||||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 56777899999999999965
No 174
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.75 E-value=0.95 Score=43.18 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.3
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..++.+++.||+|+|||..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCSEEEEECSSSSSHHHH
T ss_pred CCCceEEEECCCCcCHHHH
Confidence 4567899999999999975
No 175
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=74.27 E-value=5.3 Score=35.85 Aligned_cols=67 Identities=49% Similarity=0.739 Sum_probs=52.2
Q ss_pred CceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhh
Q psy10680 242 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISE 308 (537)
Q Consensus 242 ~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (537)
+.++.+||+++...+.........+..+++||++.+.+.++...+..+.............+.....
T Consensus 144 ~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 144 VDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPD 210 (228)
T ss_dssp CSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCH
T ss_pred CCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCH
Confidence 4589999999999888877777889999999999999999999888887776544444444444433
No 176
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=73.76 E-value=1 Score=39.83 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=15.9
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..++.+++.||+|+|||..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCCEEEEEcCCCCCHHHH
Confidence 3567899999999999975
No 177
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=73.63 E-value=1.1 Score=39.79 Aligned_cols=21 Identities=19% Similarity=0.079 Sum_probs=17.4
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
.+.+|+-++++||+|+|||..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHH
T ss_pred ccccCCEEEEECCCCCCHHHH
Confidence 356778899999999999975
No 178
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=73.41 E-value=6.3 Score=34.24 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=43.2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++++.-+..++..++.. ++.+..++|+.+..++...+ ....+|+|+|. .+. .-+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~-----~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VAA-----RGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-hhh-----cCCCcccC
Confidence 556999999999999999888753 57788899987655443332 24678999994 221 12356677
Q ss_pred eEEEe
Q psy10680 207 TYLVL 211 (537)
Q Consensus 207 ~liV~ 211 (537)
++||.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77776
No 179
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=73.41 E-value=1.1 Score=42.20 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.2
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
...+++++.||+|+|||..
T Consensus 49 ~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCSEEEEESSSSSSHHHH
T ss_pred CCCCeEEEECCCCCcHHHH
Confidence 3457899999999999975
No 180
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=73.32 E-value=1.4 Score=41.00 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+.++++.||+|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 457999999999999965
No 181
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=73.20 E-value=1.3 Score=44.84 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+++++.||+|+|||..
T Consensus 167 ~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 36899999999999976
No 182
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=73.13 E-value=1.2 Score=38.62 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.2
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..++.+++.|++|+|||.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 3557899999999999975
No 183
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=73.03 E-value=1.2 Score=38.64 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|+-++++||+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466789999999999965
No 184
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=72.86 E-value=1.1 Score=39.72 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=14.5
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|+-+.++||+|+|||..
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999965
No 185
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=72.69 E-value=1 Score=46.32 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=20.1
Q ss_pred hhhhccccCCcEEEEccCCCccccc
Q psy10680 52 QSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 52 ~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
.+...+..+.++++.||+|+|||..
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHH
Confidence 3444556778999999999999975
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=72.63 E-value=1.1 Score=41.29 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
..+++++.||+|+|||..
T Consensus 38 ~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCCEEEEESCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 346899999999999975
No 187
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=72.44 E-value=0.86 Score=44.04 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=18.2
Q ss_pred hccccCCcEEEEccCCCccccc
Q psy10680 55 PICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 55 ~~~~~~~~vli~apTGsGKT~~ 76 (537)
..+..+.++++.||+|+|||..
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHH
Confidence 3445678999999999999965
No 188
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=72.42 E-value=1.2 Score=42.39 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++++.||+|+|||.+
T Consensus 68 ~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4799999999999976
No 189
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=72.30 E-value=1.2 Score=42.29 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
++.+++.||+|+|||..
T Consensus 54 ~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 57899999999999975
No 190
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=71.85 E-value=1.2 Score=42.33 Aligned_cols=16 Identities=25% Similarity=0.150 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+.+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5789999999999975
No 191
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=71.55 E-value=1.3 Score=43.55 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
...++++.||+|+|||.+
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 446899999999999975
No 192
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=70.98 E-value=1.3 Score=38.50 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
++.+++.|++|||||.+
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45799999999999976
No 193
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=70.80 E-value=1.3 Score=39.48 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|+-++++||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456789999999999975
No 194
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.76 E-value=2.5 Score=49.80 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=57.1
Q ss_pred cCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEEEc
Q psy10680 59 SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLA 138 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~lil~ 138 (537)
+|+-+.+.+|.|||||.. +++++....+. |..++|+.
T Consensus 1430 rg~~iei~g~~~sGkttl------------------------------------~~~~~a~~~~~-------g~~~~~i~ 1466 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTL------------------------------------TLQVIAAAQRE-------GKTCAFID 1466 (1706)
T ss_dssp TTSEEEEECSTTSSHHHH------------------------------------HHHHHHHHHHT-------TCCEEEEC
T ss_pred CCCEEEEEcCCCCCHHHH------------------------------------HHHHHHHHHhc-------CCeEEEEe
Confidence 346799999999999986 56666555443 67799999
Q ss_pred ccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhc--CcccccceeEEEecchhh
Q psy10680 139 PTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLES--GTTNVNRITYLVLDEADR 216 (537)
Q Consensus 139 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~l~liV~DE~h~ 216 (537)
+-.+|-...++. ++-.++ ++++.-|+.--..|.- ..+.-..+++||+|.+-.
T Consensus 1467 ~e~~~~~~~~~~---~Gv~~~-----------------------~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1467 AEHALDPIYARK---LGVDID-----------------------NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp TTSCCCHHHHHH---TTCCGG-----------------------GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTT
T ss_pred cCCCCCHHHHHH---cCCCHH-----------------------HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHh
Confidence 988876665332 222111 2566666543222211 111224578999999887
Q ss_pred hhh
Q psy10680 217 MLD 219 (537)
Q Consensus 217 ~~~ 219 (537)
+..
T Consensus 1521 l~~ 1523 (1706)
T 3cmw_A 1521 LTP 1523 (1706)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 195
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=70.71 E-value=1.2 Score=38.90 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=16.8
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+++.||+|+|||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 45677899999999999975
No 196
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.69 E-value=1.4 Score=43.39 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=17.4
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|..++++||||+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45788999999999999964
No 197
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=70.64 E-value=1.4 Score=41.87 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
..++++.||+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999965
No 198
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=70.29 E-value=1.3 Score=40.98 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+++++.||+|+|||..
T Consensus 46 ~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5799999999999965
No 199
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=69.76 E-value=8 Score=34.39 Aligned_cols=68 Identities=37% Similarity=0.553 Sum_probs=51.2
Q ss_pred CCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhh
Q psy10680 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISE 308 (537)
Q Consensus 241 ~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (537)
+..++.+||+.+...+.........+..+++||++.+.+.++...+..+.............+.....
T Consensus 126 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 126 QPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp CCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCG
T ss_pred CCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 45589999999999888767777888999999999999999888888777665433334444444433
No 200
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=69.62 E-value=1.3 Score=42.61 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+.+++.||+|+|||..
T Consensus 45 ~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CceEEEECCCCccHHHH
Confidence 36899999999999975
No 201
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=69.51 E-value=1.5 Score=37.83 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
++-++++|++|+|||.+
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 35689999999999975
No 202
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=69.47 E-value=9.5 Score=33.36 Aligned_cols=68 Identities=29% Similarity=0.543 Sum_probs=50.8
Q ss_pred CCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhh
Q psy10680 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISE 308 (537)
Q Consensus 241 ~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (537)
...++.+||+.+...+.........+..+++||++.+.+.++...+..+.............+.....
T Consensus 122 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 122 TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPL 189 (206)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCH
T ss_pred CCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCH
Confidence 34589999999998888777777789999999999999888888888777665433344444444433
No 203
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=69.36 E-value=1.4 Score=42.39 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+++++.||+|+|||..
T Consensus 51 ~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCEEEEECSSSSCHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 35799999999999975
No 204
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=69.17 E-value=1.5 Score=38.72 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.2
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..|.-+.+.||+|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567889999999999975
No 205
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=68.75 E-value=1.5 Score=42.41 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+-++|.||||+|||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999965
No 206
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=68.64 E-value=1.5 Score=37.44 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-+++.||+|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 207
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=68.44 E-value=1.6 Score=38.74 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.++.+++.||||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456799999999999865
No 208
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=68.44 E-value=2.9 Score=41.87 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=19.5
Q ss_pred hhhhhhhccc--cCCcEEEEccCCCccccc
Q psy10680 49 IQAQSWPICL--SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 49 ~Q~~ai~~~~--~~~~vli~apTGsGKT~~ 76 (537)
-+..++..+. .+.-++|.||||||||..
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 4445554443 344689999999999965
No 209
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=68.31 E-value=1.5 Score=42.89 Aligned_cols=17 Identities=41% Similarity=0.608 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
++.+++.||+|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 35799999999999975
No 210
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=68.30 E-value=1.4 Score=43.42 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.7
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|..++++||||||||..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34567899999999999965
No 211
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=68.26 E-value=1.7 Score=37.94 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.++.+++.|++|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456899999999999975
No 212
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=68.23 E-value=7.1 Score=37.27 Aligned_cols=24 Identities=17% Similarity=-0.134 Sum_probs=18.8
Q ss_pred hhhccccCCcEEEEccCCCccccc
Q psy10680 53 SWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 53 ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
.+-.+..|.-++|.|++|+|||..
T Consensus 61 ~lgGl~~G~l~li~G~pG~GKTtl 84 (315)
T 3bh0_A 61 MTYGYKRRNFVLIAARPSMGKTAF 84 (315)
T ss_dssp HHSSBCTTCEEEEECCTTSSHHHH
T ss_pred hcCCCCCCcEEEEEeCCCCCHHHH
Confidence 334456677899999999999964
No 213
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=68.17 E-value=1.7 Score=38.55 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++++.||+|+|||..
T Consensus 39 ~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 39 PHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3699999999999975
No 214
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=68.06 E-value=8.6 Score=34.75 Aligned_cols=66 Identities=41% Similarity=0.553 Sum_probs=49.7
Q ss_pred CceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehh
Q psy10680 242 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFIS 307 (537)
Q Consensus 242 ~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (537)
+.++.+||+++.+.+.........+..+++||++.+.+.++...+..+.............+....
T Consensus 150 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 150 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp CSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred CCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 458899999999988876677778899999999999998888888877766543333344444433
No 215
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=67.58 E-value=2.9 Score=41.46 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+.+++|.||||+|||..
T Consensus 34 ~~~~~~i~G~~G~GKs~~ 51 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFT 51 (392)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred ccCceEEEcCCCCCHHHH
Confidence 567999999999999975
No 216
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=67.53 E-value=17 Score=35.77 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=52.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++++.-+..+++.++.. ++.+..++|+.+..++...+ ....+|+|+|. .+.. -+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~-Gidip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR-GLDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT-TSCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc-CCCcccC
Confidence 667999999999999999988753 57788999998866554443 23678999994 3332 3566778
Q ss_pred eEEEe
Q psy10680 207 TYLVL 211 (537)
Q Consensus 207 ~liV~ 211 (537)
++||.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88875
No 217
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=67.48 E-value=13 Score=35.09 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=51.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++++.-+..++..+.. .++.+..++|+.+..++...+ ....+|+|+|. .+. .-+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~-~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA-RGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT-CSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh-cCccccce
Confidence 44589999999999998888864 367889999998876665443 23678999994 222 23466778
Q ss_pred eEEEe
Q psy10680 207 TYLVL 211 (537)
Q Consensus 207 ~liV~ 211 (537)
++||.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 88874
No 218
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=67.39 E-value=8.7 Score=35.44 Aligned_cols=71 Identities=34% Similarity=0.600 Sum_probs=52.2
Q ss_pred CceeecCchhHHHHhhhCC-cccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhhhHHH
Q psy10680 242 AEIVVATPGRLIDFLESGT-TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDT 312 (537)
Q Consensus 242 ~~~~saTp~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (537)
+.++.+||+++...+.... .....+..+++||++.+.+.++.+.+..+............++.........
T Consensus 177 ~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~ 248 (262)
T 3ly5_A 177 INIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVED 248 (262)
T ss_dssp CSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHH
T ss_pred CCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHH
Confidence 4489999999988877643 4567788999999999999999999888887765444444455444444333
No 219
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=67.38 E-value=1.7 Score=41.49 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.5
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+-++|.||||+|||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 3478899999999965
No 220
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=67.37 E-value=1.6 Score=42.16 Aligned_cols=20 Identities=40% Similarity=0.479 Sum_probs=17.2
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|..+.++||||+|||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34788999999999999964
No 221
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=67.30 E-value=1.8 Score=38.26 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=15.9
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..|.-+.+.||+|+|||..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 3567788999999999965
No 222
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=67.16 E-value=2.8 Score=37.67 Aligned_cols=21 Identities=24% Similarity=0.175 Sum_probs=17.4
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
.+..|.-+++.||+|+|||..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHH
Confidence 355677899999999999964
No 223
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=66.93 E-value=2.3 Score=40.63 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+.++++.||||+|||.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 456899999999999975
No 224
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=66.87 E-value=1.8 Score=41.29 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=13.1
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-++|+||||+|||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478899999999965
No 225
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=66.82 E-value=9 Score=33.50 Aligned_cols=67 Identities=39% Similarity=0.663 Sum_probs=49.8
Q ss_pred CceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhh
Q psy10680 242 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISE 308 (537)
Q Consensus 242 ~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (537)
..++.+||+.+...+.........+..+++||++.+.+.++...+..+.............+.....
T Consensus 121 ~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPS 187 (207)
T ss_dssp CSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCH
T ss_pred CCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCH
Confidence 4489999999998888877777888999999999999888888888777654433333444443333
No 226
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=66.73 E-value=3.6 Score=37.23 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=15.2
Q ss_pred cCC-cEEEEccCCCccccc
Q psy10680 59 SGR-DLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~-~vli~apTGsGKT~~ 76 (537)
+|+ ++++.++.|+|||..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~ 22 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYA 22 (228)
T ss_dssp CCCEEEEEESSTTSSHHHH
T ss_pred CceEEEEEECCCCCcHHHH
Confidence 344 799999999999976
No 227
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=66.41 E-value=2.1 Score=37.95 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=16.2
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..|+-++++||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3667899999999999965
No 228
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=66.27 E-value=1.9 Score=42.25 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+++++.||+|+|||..
T Consensus 84 ~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCCEEEECSTTSCHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35899999999999975
No 229
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=66.25 E-value=1.6 Score=42.65 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+..+++.||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 445799999999999965
No 230
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=66.17 E-value=2.2 Score=38.93 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=16.5
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+++.|++|+|||..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHH
Confidence 44567899999999999964
No 231
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=66.10 E-value=2 Score=38.27 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+.+++.||+|+|||..
T Consensus 59 n~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 59 NCLVFCGPANTGKSYF 74 (212)
T ss_dssp SEEEEESCGGGCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3699999999999974
No 232
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=65.94 E-value=1.8 Score=37.18 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=16.6
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.++||+|||||..
T Consensus 6 i~~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp EESSEEEEEECCTTSCHHHH
T ss_pred CCCCEEEEEECCCCCCHHHH
Confidence 34667789999999999976
No 233
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=65.84 E-value=2 Score=36.70 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
++.+.+.||+|||||..
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45789999999999965
No 234
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=65.64 E-value=30 Score=36.77 Aligned_cols=78 Identities=12% Similarity=0.190 Sum_probs=57.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh---c-cCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL---C-RGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++|+..+...+..+... ++++..++|+.+..++...+ . ...+|+|||. .+ ..-+++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCCC
Confidence 567999999999999999888754 56778888887766554443 2 3678999995 22 233466789
Q ss_pred eEEEecchhhhh
Q psy10680 207 TYLVLDEADRML 218 (537)
Q Consensus 207 ~liV~DE~h~~~ 218 (537)
++||+-|++...
T Consensus 515 ~lVi~~d~d~~G 526 (661)
T 2d7d_A 515 SLVAILDADKEG 526 (661)
T ss_dssp EEEEETTTTCCT
T ss_pred CEEEEeCccccc
Confidence 999999987643
No 235
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=65.38 E-value=1.8 Score=40.02 Aligned_cols=15 Identities=33% Similarity=0.038 Sum_probs=13.0
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-++|+||||||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999965
No 236
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=65.11 E-value=2.1 Score=42.21 Aligned_cols=17 Identities=47% Similarity=0.640 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
..++++.||+|+|||.+
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 45899999999999975
No 237
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=65.06 E-value=1.9 Score=43.78 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.++++++.||+|+|||..
T Consensus 62 ~~~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTAL 79 (456)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCcCCHHHH
Confidence 346899999999999975
No 238
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=65.01 E-value=20 Score=35.12 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=53.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++++.-+..++..+... +..+..++|+.+..++...+ ....+|+|+|. .+ ..-+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccCC
Confidence 457999999999999999998754 56788899998876654443 23678999994 22 234567788
Q ss_pred eEEEec
Q psy10680 207 TYLVLD 212 (537)
Q Consensus 207 ~liV~D 212 (537)
++||.-
T Consensus 336 ~~Vi~~ 341 (412)
T 3fht_A 336 SVVINF 341 (412)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 888843
No 239
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=64.91 E-value=1.2 Score=41.45 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+++++.||+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35799999999999975
No 240
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=64.89 E-value=17 Score=37.58 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=55.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++++.-+..++..++.... .++.+..++|+....++...+ ....+|+|+|. .+. .-+++.++
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~-~GiDip~v 411 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA-RGMDFPNV 411 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT-SSCCCTTC
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhh-cCCCcccC
Confidence 56799999999999999999986533 267788899998876654443 24678999995 222 23567778
Q ss_pred eEEEecc
Q psy10680 207 TYLVLDE 213 (537)
Q Consensus 207 ~liV~DE 213 (537)
++||.-.
T Consensus 412 ~~VI~~~ 418 (563)
T 3i5x_A 412 HEVLQIG 418 (563)
T ss_dssp CEEEEES
T ss_pred CEEEEEC
Confidence 8887554
No 241
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=64.85 E-value=11 Score=33.87 Aligned_cols=65 Identities=32% Similarity=0.506 Sum_probs=48.5
Q ss_pred CCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCC-ChHHHHHHHHhhhcCCCcccceee
Q psy10680 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMG-FEPQIRKIIQMTRHAHPVVPVSLF 305 (537)
Q Consensus 241 ~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 305 (537)
+..++.+||+.+...+.........+..+++||++.+.+.+ +.+.+..+.............+..
T Consensus 142 ~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT 207 (230)
T 2oxc_A 142 KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSAT 207 (230)
T ss_dssp SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESC
T ss_pred CCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEec
Confidence 34589999999999888767777788899999999999887 888887777665433333334433
No 242
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=64.85 E-value=2.2 Score=37.48 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+-++|+||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999975
No 243
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=64.67 E-value=2 Score=39.61 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+++++.||+|+|||..
T Consensus 50 ~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4599999999999965
No 244
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=64.59 E-value=2.1 Score=37.20 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+.-+++.|++|||||..
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45789999999999975
No 245
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=64.20 E-value=22 Score=34.42 Aligned_cols=74 Identities=8% Similarity=0.039 Sum_probs=53.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++++.-+..+++.+... ++.+..++|+.+..++...+ .....|+|+|.- + ..-+++..+
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~~Gidi~~~ 319 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F-GRGMDIERV 319 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC-----C-SSCBCCTTE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh-----h-hcCCCcccC
Confidence 567999999999999999988753 56788899988766554433 236789999941 1 223467778
Q ss_pred eEEEecch
Q psy10680 207 TYLVLDEA 214 (537)
Q Consensus 207 ~liV~DE~ 214 (537)
++||.-+.
T Consensus 320 ~~Vi~~~~ 327 (391)
T 1xti_A 320 NIAFNYDM 327 (391)
T ss_dssp EEEEESSC
T ss_pred CEEEEeCC
Confidence 88887554
No 246
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=63.81 E-value=5.4 Score=35.64 Aligned_cols=21 Identities=24% Similarity=-0.016 Sum_probs=17.5
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
.+..|.-+.+.||+|+|||..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHH
Confidence 455677899999999999965
No 247
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=63.80 E-value=7.6 Score=36.74 Aligned_cols=71 Identities=27% Similarity=0.389 Sum_probs=50.3
Q ss_pred CCceeecCchhHHHHhhh-CCcccccceeeeccchhhhhc-CCChHHHHHHHHhhhcCCCcccceeehhhhHH
Q psy10680 241 GAEIVVATPGRLIDFLES-GTTNVNRITYLVLDEADRMLD-MGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311 (537)
Q Consensus 241 ~~~~~saTp~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (537)
...++.+||+++.+++.. .......+..+++|+++.+.+ .++...+..+............++........
T Consensus 210 ~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~ 282 (300)
T 3fmo_B 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVW 282 (300)
T ss_dssp CCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHH
T ss_pred CCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHH
Confidence 345899999999999865 455677899999999999987 57777777776665444444444544444333
No 248
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=63.65 E-value=19 Score=37.55 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=56.1
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++|+.-+..+++.++.... .++.+..++|+.+..++...+ ....+|+|+|. .+. .-+++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~-~GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA-RGMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT-SSCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh-cCCCcccC
Confidence 56799999999999999999986533 267788899998876654443 24678999995 222 23566778
Q ss_pred eEEEecch
Q psy10680 207 TYLVLDEA 214 (537)
Q Consensus 207 ~liV~DE~ 214 (537)
++||.-..
T Consensus 361 ~~VI~~~~ 368 (579)
T 3sqw_A 361 HEVLQIGV 368 (579)
T ss_dssp CEEEEESC
T ss_pred CEEEEcCC
Confidence 88886553
No 249
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=63.63 E-value=1.9 Score=41.79 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
..++++.||+|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45799999999999975
No 250
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=63.44 E-value=2.1 Score=36.72 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-+++.|++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478999999999975
No 251
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=63.35 E-value=2.5 Score=38.34 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=12.9
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|+-+.+.||+|+|||..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45677889999999999975
No 252
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=63.24 E-value=23 Score=34.24 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=55.3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
++++||.++++.-+..+++.++.. +..+..++|+.+..++...+ ....+|+|+|. .+ ..-+++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCcccC
Confidence 567999999999999999988754 56788899988766554443 23578999994 22 234567789
Q ss_pred eEEEecchh
Q psy10680 207 TYLVLDEAD 215 (537)
Q Consensus 207 ~liV~DE~h 215 (537)
++||.-+..
T Consensus 313 ~~Vi~~~~p 321 (395)
T 3pey_A 313 SMVVNYDLP 321 (395)
T ss_dssp EEEEESSCC
T ss_pred CEEEEcCCC
Confidence 999875544
No 253
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=63.11 E-value=1.8 Score=37.49 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|..+++.|++|||||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355789999999999975
No 254
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=63.11 E-value=12 Score=42.87 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=59.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+++++|++|++.-+..+++.++...+ +.++..++|+.+..++...+ ....+|+|||. . -..-+++.++
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v-~e~GiDip~v 883 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----I-IETGIDIPTA 883 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----T-TGGGSCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----c-ceeeecccCC
Confidence 67799999999999999999987654 56788899998766554332 34689999995 1 2234577889
Q ss_pred eEEEecchhh
Q psy10680 207 TYLVLDEADR 216 (537)
Q Consensus 207 ~liV~DE~h~ 216 (537)
++||+..++.
T Consensus 884 ~~VIi~~~~~ 893 (1151)
T 2eyq_A 884 NTIIIERADH 893 (1151)
T ss_dssp EEEEETTTTS
T ss_pred cEEEEeCCCC
Confidence 9999887765
No 255
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=62.95 E-value=2.2 Score=36.30 Aligned_cols=15 Identities=13% Similarity=-0.190 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.|++|+|||.+
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 256
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=62.92 E-value=2.3 Score=41.58 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+++++.||+|+|||..
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999975
No 257
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=62.83 E-value=2.7 Score=37.76 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=16.0
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|+-+.++||+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34678899999999999965
No 258
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=62.40 E-value=2.3 Score=40.67 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..+++.||+|+|||..
T Consensus 39 ~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCEEECCTTCCCHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6899999999999975
No 259
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=62.12 E-value=4.6 Score=39.44 Aligned_cols=20 Identities=30% Similarity=0.134 Sum_probs=16.5
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|+-+++.|++|+|||..
T Consensus 60 l~~G~ii~I~G~pGsGKTtL 79 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTL 79 (356)
T ss_dssp EETTSEEEEECSTTSSHHHH
T ss_pred ccCCeEEEEECCCCCCHHHH
Confidence 33557899999999999975
No 260
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=62.08 E-value=2.6 Score=36.74 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.5
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+-+.+.||+|+|||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999965
No 261
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=62.06 E-value=7.1 Score=39.36 Aligned_cols=22 Identities=18% Similarity=-0.073 Sum_probs=17.9
Q ss_pred hccccCCcEEEEccCCCccccc
Q psy10680 55 PICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 55 ~~~~~~~~vli~apTGsGKT~~ 76 (537)
-.+..|.-++|.|++|+|||..
T Consensus 192 gGl~~G~liiIaG~pG~GKTtl 213 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAF 213 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHH
T ss_pred CCCCCCcEEEEEeCCCCChHHH
Confidence 3455667899999999999974
No 262
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=61.53 E-value=2.4 Score=38.07 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=13.6
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999975
No 263
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=61.28 E-value=4.8 Score=39.46 Aligned_cols=20 Identities=25% Similarity=0.079 Sum_probs=16.3
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-++|.||+|+|||..
T Consensus 71 l~~G~li~I~G~pGsGKTtl 90 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTL 90 (366)
T ss_dssp EETTSEEEEEESTTSSHHHH
T ss_pred ccCCcEEEEEcCCCCChHHH
Confidence 34556799999999999974
No 264
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=61.26 E-value=2.5 Score=41.85 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+++++.||+|+|||.+
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999976
No 265
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=61.16 E-value=2.3 Score=40.32 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..+++.||+|+|||.+
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3799999999999975
No 266
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=60.97 E-value=2.4 Score=36.32 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|..+++.||.|+|||..
T Consensus 7 ~g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp TSEEEEEECSTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 355789999999999965
No 267
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=60.75 E-value=28 Score=33.26 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=52.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++++.-+..+++.++.. +..+..++|+.+..++...+ ....+|+|+|. .+.. -+++.++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~-----Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMSR-----GIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THHH-----HCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhhc-----CCCcccC
Confidence 556899999999999999988754 56788899988766554433 23678999994 2221 2456678
Q ss_pred eEEEecc
Q psy10680 207 TYLVLDE 213 (537)
Q Consensus 207 ~liV~DE 213 (537)
++||.-+
T Consensus 308 ~~Vi~~~ 314 (367)
T 1hv8_A 308 NCVINYH 314 (367)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 8887643
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=60.54 E-value=2.8 Score=36.98 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+++.||.|+|||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456799999999999965
No 269
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=60.51 E-value=2.6 Score=39.51 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=24.6
Q ss_pred ecCCcceeeehhhhhhcccccC--CCCCCChhhhhhhhc--cccCCcEEEEccCCCccccc
Q psy10680 20 RSGYINVLIASDVASRGLGKNS--GYGKPTSIQAQSWPI--CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~Q~~ai~~--~~~~~~vli~apTGsGKT~~ 76 (537)
+...|.+.+-.+.+.+.|.+.. .+..+ +++.. +.-.+++++.||+|+|||..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~-----~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNP-----DQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSH-----HHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCH-----HHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 3456666666666665553211 11111 22221 12224599999999999965
No 270
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=60.48 E-value=2.8 Score=40.31 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.++|+||||+|||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999975
No 271
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=60.41 E-value=14 Score=33.65 Aligned_cols=68 Identities=40% Similarity=0.680 Sum_probs=49.5
Q ss_pred CCceeecCchhHHHHhhh-CCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhh
Q psy10680 241 GAEIVVATPGRLIDFLES-GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISE 308 (537)
Q Consensus 241 ~~~~~saTp~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (537)
++.++.+||+++...+.. .......+..+++||++.+.+.++...+..+.............+.....
T Consensus 161 ~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 161 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTK 229 (249)
T ss_dssp CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCH
T ss_pred CCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCH
Confidence 345899999999888876 33456678899999999999999998888887765444334444444433
No 272
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=60.24 E-value=2.9 Score=36.77 Aligned_cols=18 Identities=28% Similarity=0.206 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.++.+++.|+.|||||..
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456789999999999975
No 273
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=60.23 E-value=13 Score=37.24 Aligned_cols=53 Identities=47% Similarity=0.888 Sum_probs=46.7
Q ss_pred CCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhh
Q psy10680 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293 (537)
Q Consensus 241 ~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (537)
++.++.+||+++.+++.........+..+++||++.+.+.++.+.+..+....
T Consensus 179 ~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~ 231 (434)
T 2db3_A 179 GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHV 231 (434)
T ss_dssp CCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCT
T ss_pred CCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhc
Confidence 45599999999999998877778889999999999999999999998887764
No 274
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.21 E-value=3.2 Score=40.15 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++++.||+|+|||..
T Consensus 59 ~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTST 74 (353)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4699999999999975
No 275
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=60.14 E-value=2.5 Score=36.72 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+.-+++.|++|+|||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999975
No 276
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=59.99 E-value=15 Score=32.46 Aligned_cols=67 Identities=37% Similarity=0.586 Sum_probs=50.4
Q ss_pred CceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhh
Q psy10680 242 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISE 308 (537)
Q Consensus 242 ~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (537)
..++.+||+.+...+.........+..+++||++.+...++...+..+.............+.....
T Consensus 132 ~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 132 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCH
Confidence 4589999999988888777777888999999999999988888888777665433334444444433
No 277
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=59.50 E-value=5.8 Score=37.57 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.++-+.++||+|+|||..
T Consensus 104 ~g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999975
No 278
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=59.49 E-value=29 Score=33.77 Aligned_cols=72 Identities=6% Similarity=0.046 Sum_probs=52.2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++++.-+..+++.++.. ++.+..++|+.+..++...+ .....|+|+|. .+ ..-+++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccCC
Confidence 557999999999999999988754 56788889988766554433 23578999995 12 223567778
Q ss_pred eEEEec
Q psy10680 207 TYLVLD 212 (537)
Q Consensus 207 ~liV~D 212 (537)
++||.-
T Consensus 328 ~~Vi~~ 333 (400)
T 1s2m_A 328 NVVINF 333 (400)
T ss_dssp EEEEES
T ss_pred CEEEEe
Confidence 888753
No 279
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=58.70 E-value=2.6 Score=37.31 Aligned_cols=22 Identities=27% Similarity=-0.026 Sum_probs=17.5
Q ss_pred hccccCCcEEEEccCCCccccc
Q psy10680 55 PICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 55 ~~~~~~~~vli~apTGsGKT~~ 76 (537)
+.+..+.-+.+.|++|+|||..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHH
Confidence 4455566788999999999965
No 280
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=58.65 E-value=29 Score=36.35 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=53.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+..+||.++++.-++++++.+... ++.+..++++.+..++...+ ....+|+|+|.. + ..-++..++
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a-----~-~~GID~p~V 336 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA-----F-GMGIDKPDV 336 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT-----S-CTTCCCSCE
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-----h-hcCCCcccc
Confidence 567899999999999999999753 67888999998876654433 346789999952 1 223567788
Q ss_pred eEEEe
Q psy10680 207 TYLVL 211 (537)
Q Consensus 207 ~liV~ 211 (537)
++||.
T Consensus 337 ~~VI~ 341 (591)
T 2v1x_A 337 RFVIH 341 (591)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 88884
No 281
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=58.63 E-value=3.1 Score=36.30 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+..+++.|++|||||.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456799999999999975
No 282
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=58.57 E-value=2.9 Score=39.11 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+++++.||+|+|||..
T Consensus 74 ~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcChHHHH
Confidence 3599999999999965
No 283
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=58.49 E-value=13 Score=37.10 Aligned_cols=55 Identities=9% Similarity=-0.014 Sum_probs=39.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCC
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATP 189 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 189 (537)
+++++|.+|++.-++.+++.++.. ++++..++|+..............+|+|+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 346899999999999999998765 6778888887332221122234689999994
No 284
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=58.31 E-value=3.2 Score=40.21 Aligned_cols=15 Identities=33% Similarity=0.299 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-++|+||||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 578999999999965
No 285
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=58.22 E-value=30 Score=33.79 Aligned_cols=72 Identities=7% Similarity=0.131 Sum_probs=52.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
..++||.++++.-+..+++.+... ++.+..++|+.+..++...+ .....|+|+|. .+ ..-+++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccC
Confidence 346999999999999999888753 56788899998766554433 23678999995 22 234567788
Q ss_pred eEEEec
Q psy10680 207 TYLVLD 212 (537)
Q Consensus 207 ~liV~D 212 (537)
++||.-
T Consensus 346 ~~Vi~~ 351 (410)
T 2j0s_A 346 SLIINY 351 (410)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 888853
No 286
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=58.18 E-value=3.5 Score=36.55 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=16.3
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
.+..|+-+.+.||+|+|||..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 567788899999999999965
No 287
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=58.01 E-value=25 Score=36.08 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=53.1
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+..+||.++++.-++++++.+... ++.+..++|+.+..++.... ....+|+|+|.. + ..-+++.++
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a-----~-~~GiD~p~v 305 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA-----F-GMGINKPNV 305 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT-----S-CTTTCCTTC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-----h-hCCCCccCc
Confidence 456899999999999999998754 56788999998866554432 246799999962 1 223467778
Q ss_pred eEEEec
Q psy10680 207 TYLVLD 212 (537)
Q Consensus 207 ~liV~D 212 (537)
++||.-
T Consensus 306 ~~VI~~ 311 (523)
T 1oyw_A 306 RFVVHF 311 (523)
T ss_dssp CEEEES
T ss_pred cEEEEE
Confidence 888853
No 288
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=57.53 E-value=4.1 Score=36.25 Aligned_cols=30 Identities=17% Similarity=0.049 Sum_probs=21.7
Q ss_pred CChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 46 PTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 46 ~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
.++.++... .+..|.-+++.|++|+|||..
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHH
Confidence 345555553 345667899999999999965
No 289
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=57.51 E-value=3.7 Score=36.99 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=16.1
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
.+..|+-+++.||.|+|||..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHH
Confidence 345678899999999999965
No 290
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=57.39 E-value=3.5 Score=37.49 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=18.2
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
.+..|.-+.+.||+|+|||..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTL 46 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHH
Confidence 566788999999999999975
No 291
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=57.28 E-value=6.9 Score=37.20 Aligned_cols=18 Identities=33% Similarity=0.566 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+.-+.+.||+|+|||..
T Consensus 101 ~g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSSEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCcHHHH
Confidence 456788999999999964
No 292
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=57.21 E-value=9.4 Score=34.37 Aligned_cols=21 Identities=19% Similarity=-0.020 Sum_probs=17.6
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
.+..|.-+.+.||+|+|||..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl 40 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQI 40 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHH
Confidence 355677899999999999975
No 293
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=57.16 E-value=3.3 Score=37.33 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=14.8
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
...+++.|++|||||..
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45789999999999975
No 294
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=56.96 E-value=9.1 Score=35.95 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=18.3
Q ss_pred hccccCCcEEEEccCCCccccc
Q psy10680 55 PICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 55 ~~~~~~~~vli~apTGsGKT~~ 76 (537)
-.+..|.-++|.||+|+|||..
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHH
Confidence 3456778899999999999965
No 295
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=56.63 E-value=3.3 Score=39.06 Aligned_cols=16 Identities=38% Similarity=0.326 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.-++++||+|+|||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999975
No 296
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=56.60 E-value=3.7 Score=36.79 Aligned_cols=17 Identities=18% Similarity=0.108 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
...+++.||+|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35799999999999975
No 297
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=56.41 E-value=3.4 Score=36.83 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.||+|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 298
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=56.33 E-value=6.7 Score=37.51 Aligned_cols=15 Identities=27% Similarity=0.153 Sum_probs=13.0
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-++|.|+.|+|||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 478999999999975
No 299
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=56.32 E-value=3.5 Score=42.20 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
..++++.||+|+|||++
T Consensus 238 ~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCcEEEECcCCCCHHHH
Confidence 46899999999999976
No 300
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=56.29 E-value=4.1 Score=42.91 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=14.1
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999975
No 301
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=56.21 E-value=3.5 Score=40.83 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=13.0
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-++|.||||+|||..
T Consensus 4 ~i~i~GptgsGKttl 18 (409)
T 3eph_A 4 VIVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEEECSSSSHHHH
T ss_pred EEEEECcchhhHHHH
Confidence 478899999999965
No 302
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=56.21 E-value=3.6 Score=36.80 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+..+++.|++|||||..
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45789999999999975
No 303
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=56.20 E-value=3.2 Score=36.57 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=21.2
Q ss_pred CCChhhhhhhhccccCCcEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
..+..+..++ ....|.-+.+.||+|+|||..
T Consensus 11 ~~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 11 SVEKVDRQRL-LDQKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCCHHHHHHH-HTSCCEEEEEECSTTSSHHHH
T ss_pred ccCHHHHHHh-cCCCCeEEEEECCCCCCHHHH
Confidence 3444555444 224567889999999999965
No 304
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=56.00 E-value=3.3 Score=41.86 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.++++.||+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 3799999999999975
No 305
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=55.95 E-value=3.5 Score=36.77 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.||+|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999976
No 306
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=55.83 E-value=18 Score=32.87 Aligned_cols=52 Identities=63% Similarity=1.066 Sum_probs=44.7
Q ss_pred CCceeecCchhHHHHhhhCCcccccceeeeccchhhhhcCCChHHHHHHHHh
Q psy10680 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 292 (537)
Q Consensus 241 ~~~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (537)
++.++.+||+++...+.........+..+++||++.+.+.++.+.+..+...
T Consensus 150 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 201 (253)
T 1wrb_A 150 GCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEE 201 (253)
T ss_dssp CCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHS
T ss_pred CCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhh
Confidence 3458999999999998887777778899999999999999999888888774
No 307
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=55.80 E-value=5.5 Score=45.68 Aligned_cols=22 Identities=14% Similarity=0.073 Sum_probs=16.9
Q ss_pred cEEEEecccccCCCcCCccEEEEec
Q psy10680 428 NVLIASDVASRGLDVEDIKYVVNYD 452 (537)
Q Consensus 428 ~iLvaT~~l~~Gidi~~~~~Vi~~d 452 (537)
.|.|+|-...+|++++ +|+..+
T Consensus 587 ~V~i~t~~~argl~f~---~V~l~G 608 (1166)
T 3u4q_B 587 QVFVGNMDLSRMYGTS---CTFVLG 608 (1166)
T ss_dssp CEEEEESSSCCCSSCS---EEEEEC
T ss_pred EEEEecCcccccCCCC---EEEEeC
Confidence 5999999999999884 455444
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=55.67 E-value=3.7 Score=35.14 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.|++|||||.+
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 689999999999975
No 309
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=55.27 E-value=3.5 Score=36.28 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+-++++|++|+|||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4699999999999975
No 310
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=55.27 E-value=4.1 Score=37.85 Aligned_cols=15 Identities=20% Similarity=0.144 Sum_probs=13.8
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.||+|+|||+.
T Consensus 106 ~~~l~GppgtGKt~~ 120 (267)
T 1u0j_A 106 TIWLFGPATTGKTNI 120 (267)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 599999999999976
No 311
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=55.27 E-value=2.9 Score=36.35 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.5
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.-+++.||+|+|||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3478999999999975
No 312
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=55.18 E-value=8.2 Score=37.37 Aligned_cols=18 Identities=22% Similarity=0.019 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+++.||+|+|||..
T Consensus 121 ~G~i~~I~G~~GsGKTtl 138 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQL 138 (343)
T ss_dssp SSEEEEEECCTTCTHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 445789999999999975
No 313
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=55.08 E-value=53 Score=34.88 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=56.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh---c-cCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL---C-RGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++|+..+..+...+... ++++..++++.+..++...+ . ...+|+|||. .+ ..-+++..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCCC
Confidence 567999999999999999888754 56777888887766554442 2 3578999984 22 223466789
Q ss_pred eEEEecchhhh
Q psy10680 207 TYLVLDEADRM 217 (537)
Q Consensus 207 ~liV~DE~h~~ 217 (537)
++||+=+++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 99998887654
No 314
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=55.08 E-value=3.8 Score=41.69 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
..++++.||+|+|||.+
T Consensus 201 ~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 35899999999999975
No 315
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=54.89 E-value=3.4 Score=35.87 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.-+++.|++|||||..
T Consensus 4 ~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999975
No 316
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=54.55 E-value=4.1 Score=35.13 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..+++.|++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3589999999999975
No 317
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=54.52 E-value=3.4 Score=36.06 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+.-+++.|++|||||..
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 446789999999999975
No 318
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=54.25 E-value=4.2 Score=40.95 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
.+++++.||+|+|||..
T Consensus 50 ~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEEcCCCCCHHHH
Confidence 36899999999999975
No 319
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=54.15 E-value=3.9 Score=39.47 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5799999999999965
No 320
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=54.12 E-value=3.8 Score=41.77 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+++++.||+|+|||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999975
No 321
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=54.10 E-value=15 Score=36.84 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=44.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh-ccCCcEEEeCCchhHHHHhcCcccccceeEE
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL-CRGAEIVVATPGRLIDFLESGTTNVNRITYL 209 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~li 209 (537)
+.+++|.+|++.-+.++++.++.. ++++..++|+.. ....... ....+|+|+|. .+.. -+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R-~~~~~~F~~g~~~vLVaT~-----v~e~-GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTF-EREYPTIKQKKPDFILATD-----IAEM-GANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSC-C--------CCCSEEEESS-----STTC-CTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhH-HHHHhhhcCCCceEEEECC-----hhhe-eeccC-ceEE
Confidence 456999999999999999998764 567888888432 2222233 34679999995 2222 23455 7777
Q ss_pred E
Q psy10680 210 V 210 (537)
Q Consensus 210 V 210 (537)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 322
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=53.94 E-value=4.8 Score=35.73 Aligned_cols=21 Identities=24% Similarity=-0.040 Sum_probs=17.3
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
.+..|.-+++.||+|+|||..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTL 36 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHH
Confidence 345667899999999999975
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=53.88 E-value=4.2 Score=35.74 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..+++.|++|||||..
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999975
No 324
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=53.85 E-value=3.8 Score=35.45 Aligned_cols=15 Identities=27% Similarity=0.118 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.|++|+|||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999965
No 325
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=53.55 E-value=4 Score=34.60 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+++++.|+.|||||.+
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4789999999999976
No 326
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=53.48 E-value=8.9 Score=37.94 Aligned_cols=77 Identities=10% Similarity=0.108 Sum_probs=54.1
Q ss_pred HhCceeEEEEeeccCccccccccccc---cccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecccc----cCCCcCCc
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVSS---SLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVAS----RGLDVEDI 445 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~l~----~Gidi~~~ 445 (537)
..+...++.+.++.-+.+. ...+.. .++++..++|+.+..++....+.+..|..+|+|+|.-.- .-++...+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~-~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 140 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQT-LERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRF 140 (414)
T ss_dssp TTTCCEEEEESSHHHHHHH-HHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCC
T ss_pred cCCCEEEEEECCHHHHHHH-HHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccc
Confidence 3455566666666665555 333333 577899999999998888888899999999999996221 12455677
Q ss_pred cEEEE
Q psy10680 446 KYVVN 450 (537)
Q Consensus 446 ~~Vi~ 450 (537)
.+||.
T Consensus 141 ~~iVi 145 (414)
T 3oiy_A 141 DFVFV 145 (414)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77774
No 327
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=53.43 E-value=4.4 Score=37.38 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
|+.+++.|++|+|||.+
T Consensus 48 g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp TCCEEEECSTTSCHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 88999999999999965
No 328
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=53.18 E-value=4.2 Score=36.07 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+.|.||+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788999999999964
No 329
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=53.15 E-value=22 Score=31.80 Aligned_cols=68 Identities=32% Similarity=0.558 Sum_probs=48.6
Q ss_pred CCceeecCchhHHHHhhhC-CcccccceeeeccchhhhhcCCChHHHHHHHHhhhcCCCcccceeehhh
Q psy10680 241 GAEIVVATPGRLIDFLESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISE 308 (537)
Q Consensus 241 ~~~~~saTp~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (537)
+..++.+||+.+...+... ......+..+++||++.+.+.++...+..+.............+.....
T Consensus 146 ~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 146 NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTK 214 (236)
T ss_dssp TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCH
T ss_pred CCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCH
Confidence 3458999999998887764 3455678899999999999999888888877765433333444443333
No 330
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=53.01 E-value=4.2 Score=34.94 Aligned_cols=17 Identities=24% Similarity=0.100 Sum_probs=10.6
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
++-+++.|++|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45689999999999976
No 331
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=52.80 E-value=4.4 Score=39.52 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=20.5
Q ss_pred hhhhhhhcc--------ccCC--cEEEEccCCCccccc
Q psy10680 49 IQAQSWPIC--------LSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 49 ~Q~~ai~~~--------~~~~--~vli~apTGsGKT~~ 76 (537)
-|.+.+..+ ++|- .++..|.||||||++
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 477666443 3554 477799999999988
No 332
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=52.75 E-value=4.7 Score=36.71 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=17.0
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 45778899999999999964
No 333
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=52.61 E-value=4.5 Score=34.38 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=13.8
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+.+++.|++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3589999999999975
No 334
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=52.46 E-value=4.5 Score=36.15 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+..+++.|++|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 35789999999999975
No 335
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=52.44 E-value=4.7 Score=33.72 Aligned_cols=16 Identities=38% Similarity=0.295 Sum_probs=13.4
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.-.+|.||+|+|||.+
T Consensus 24 g~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3578999999999965
No 336
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=52.30 E-value=6.4 Score=40.37 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=16.9
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..+.+++|.|+||||||..
T Consensus 164 L~~~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVG 183 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHH
T ss_pred cccCceEEEECCCCCCHHHH
Confidence 34567999999999999975
No 337
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=52.25 E-value=4.9 Score=35.51 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+.-+++.|+.|||||..
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 456799999999999975
No 338
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=51.97 E-value=4.4 Score=34.23 Aligned_cols=15 Identities=27% Similarity=0.178 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.|++|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999965
No 339
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=51.92 E-value=4.9 Score=34.80 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=13.1
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+.+.||.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999965
No 340
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=51.86 E-value=8.4 Score=33.42 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=12.3
Q ss_pred EEEEccCCCccccc
Q psy10680 63 LIGIAQTGSGKTLS 76 (537)
Q Consensus 63 vli~apTGsGKT~~ 76 (537)
++|.|++|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 68999999999964
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=51.79 E-value=4.2 Score=35.88 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+.-+++.|++|||||..
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 345689999999999975
No 342
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=51.63 E-value=4.3 Score=34.92 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
+|..+++.|+.|||||.+
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356788999999999965
No 343
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=51.48 E-value=17 Score=41.62 Aligned_cols=59 Identities=19% Similarity=0.100 Sum_probs=39.1
Q ss_pred cEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCC----CCCCCCceEEEE
Q psy10680 62 DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPK----LEEGDGPIALVL 137 (537)
Q Consensus 62 ~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~----~~~~~~~~~lil 137 (537)
..+|.|.-|||||++ ..--++..+...+. .....-..+|+|
T Consensus 18 ~~lV~AsAGSGKT~~-----------------------------------L~~r~lrLll~~g~~~~~~~~~~~~~ILvv 62 (1180)
T 1w36_B 18 ERLIEASAGTGKTFT-----------------------------------IAALYLRLLLGLGGSAAFPRPLTVEELLVV 62 (1180)
T ss_dssp CEEEECCTTSCHHHH-----------------------------------HHHHHHHHHTTCSSSSSCSSCCCGGGEEEE
T ss_pred CEEEEECCCCCHHHH-----------------------------------HHHHHHHHHhcCCcccccCCCCCHHHEEEE
Confidence 459999999999987 33334444443210 000113469999
Q ss_pred cccHHHHHHHHHHHHHhc
Q psy10680 138 APTRELAQQIQAVISIFS 155 (537)
Q Consensus 138 ~Pt~~L~~q~~~~~~~~~ 155 (537)
+=|+.=+.++.+++....
T Consensus 63 TFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 63 TFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp ESCHHHHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHHHHH
Confidence 999999999988887543
No 344
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=51.47 E-value=4.9 Score=38.66 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=23.1
Q ss_pred CCChhhhhhhhc--------cccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPI--------CLSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~--------~~~~~--~vli~apTGsGKT~~ 76 (537)
.|..-|.+.+.. ++.|- .++..|.||||||++
T Consensus 53 ~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 53 QSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceE
Confidence 455667766644 34565 467799999999998
No 345
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=51.44 E-value=11 Score=36.62 Aligned_cols=18 Identities=28% Similarity=0.136 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+.|.||+|+|||..
T Consensus 130 ~G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQL 147 (349)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456789999999999975
No 346
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=51.40 E-value=4.4 Score=35.04 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.|++|||||.+
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999975
No 347
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=51.31 E-value=7.2 Score=37.02 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.6
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..|.-+.+.||+|+|||..
T Consensus 98 ~~g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp SSCEEEEEECCTTSCHHHH
T ss_pred CCCcEEEEEcCCCCCHHHH
Confidence 3556788999999999965
No 348
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=51.20 E-value=5.4 Score=37.94 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=17.1
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|+-+.|+||+|+|||..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHH
T ss_pred ecCCCEEEEECCCCCcHHHH
Confidence 44778899999999999964
No 349
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=51.09 E-value=4.8 Score=35.64 Aligned_cols=15 Identities=40% Similarity=0.406 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-.++.|++|||||+.
T Consensus 7 i~l~tG~pGsGKT~~ 21 (199)
T 2r2a_A 7 ICLITGTPGSGKTLK 21 (199)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 468999999999986
No 350
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=51.04 E-value=4.4 Score=35.09 Aligned_cols=18 Identities=33% Similarity=0.250 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+..+++.|++|+|||..
T Consensus 12 ~~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456789999999999965
No 351
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=50.78 E-value=5.9 Score=37.48 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=13.7
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
++++.||+|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 699999999999975
No 352
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=50.66 E-value=4.6 Score=38.40 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=13.9
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
++++.||+|+|||..
T Consensus 48 ~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTA 62 (327)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 699999999999975
No 353
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=50.59 E-value=4.7 Score=35.88 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.|++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 354
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=50.34 E-value=5.1 Score=36.23 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+..+++.|++|||||..
T Consensus 16 ~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35799999999999975
No 355
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=50.31 E-value=5.1 Score=35.67 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=13.0
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.||+||||+..
T Consensus 2 ~Iil~GpPGsGKgTq 16 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQ 16 (206)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999865
No 356
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=50.22 E-value=8.5 Score=36.61 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.2
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
++-+.+.+|+|+|||..
T Consensus 104 ~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 44678999999999975
No 357
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=50.08 E-value=13 Score=36.77 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+.|.||+|+|||..
T Consensus 177 ~Gei~~I~G~sGsGKTTL 194 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQL 194 (400)
T ss_dssp TTSEEEEEESTTSSHHHH
T ss_pred CCcEEEEEcCCCCChHHH
Confidence 456789999999999975
No 358
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=49.97 E-value=5.2 Score=35.36 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
++.-+++.|+.|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456799999999999975
No 359
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=49.95 E-value=5.5 Score=38.82 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=23.1
Q ss_pred CCChhhhhhhhc--------cccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPI--------CLSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~--------~~~~~--~vli~apTGsGKT~~ 76 (537)
.|..-|.+.+.. ++.|- .++..|.||||||++
T Consensus 56 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 56 DMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceE
Confidence 455667776653 34565 467799999999988
No 360
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=49.93 E-value=6.4 Score=38.24 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=21.9
Q ss_pred CCChhhhhhh-------hccccCCc--EEEEccCCCccccc
Q psy10680 45 KPTSIQAQSW-------PICLSGRD--LIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai-------~~~~~~~~--vli~apTGsGKT~~ 76 (537)
.|..-|.+.+ ..+++|-| ++..|.||||||++
T Consensus 62 ~~~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyT 102 (349)
T 3t0q_A 62 EPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYT 102 (349)
T ss_dssp CTTCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceE
Confidence 3444555544 44556654 57799999999988
No 361
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=49.86 E-value=31 Score=34.65 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=45.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEE
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLV 210 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV 210 (537)
++++||.+|++.-+.++++.++.. ++.+..+++..........-....+|+|+|. .+..+ +++.. ++||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~G-iDip~-~~VI 256 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEMG-ANFRA-GRVI 256 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGSS-CCCCC-SEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHhC-cCCCC-CEEE
Confidence 346999999999999999988743 5677788876553222211234679999994 33333 34444 6665
No 362
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=49.84 E-value=4.6 Score=35.71 Aligned_cols=18 Identities=28% Similarity=-0.016 Sum_probs=14.5
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+.-+.+.||+|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 344578999999999965
No 363
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=49.73 E-value=5 Score=35.08 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=13.1
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.|++|+|||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478999999999965
No 364
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=49.69 E-value=5.2 Score=35.78 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..+.+.||+|||||..
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999965
No 365
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=49.58 E-value=5.1 Score=41.62 Aligned_cols=18 Identities=33% Similarity=0.257 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+..+++.||+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467899999999999965
No 366
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=49.53 E-value=6.4 Score=38.19 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=22.1
Q ss_pred CCChhhhhhhh-------ccccCCc--EEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWP-------ICLSGRD--LIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~-------~~~~~~~--vli~apTGsGKT~~ 76 (537)
.|..-|.+.+. .++.|-| ++..|.||||||++
T Consensus 61 ~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyT 101 (347)
T 1f9v_A 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFT 101 (347)
T ss_dssp CTTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEe
Confidence 34455655553 4456654 67799999999988
No 367
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=49.51 E-value=5 Score=38.91 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=23.3
Q ss_pred CCChhhhhhhhcc--------ccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPIC--------LSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~--------~~~~--~vli~apTGsGKT~~ 76 (537)
.+..-|.+.+..+ ++|- .++..|.||||||++
T Consensus 70 ~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 70 PATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred CCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeE
Confidence 4566677776543 3555 467799999999988
No 368
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=49.23 E-value=44 Score=36.20 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=53.3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhc-------ccceeeEEEEEcCcchhHhHHHhc---------cCCcEEEeCCchhHH
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFS-------RTMRIRHACLYGGTSKMYQTRDLC---------RGAEIVVATPGRLID 194 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~Ivv~Tp~~l~~ 194 (537)
++.+||.+|++.-+...++.+.... ...++.+..++|+.+..++...+. ....|+|+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 5679999999999999998887522 224788999999998777655442 2357999995
Q ss_pred HHhcCcccccceeEEEe
Q psy10680 195 FLESGTTNVNRITYLVL 211 (537)
Q Consensus 195 ~l~~~~~~~~~l~liV~ 211 (537)
.+.. -+++..+++||-
T Consensus 378 iae~-GidIp~v~~VId 393 (773)
T 2xau_A 378 IAET-SLTIDGIVYVVD 393 (773)
T ss_dssp HHHH-TCCCTTEEEEEE
T ss_pred HHHh-CcCcCCeEEEEe
Confidence 2222 245667777764
No 369
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=49.20 E-value=6.1 Score=36.03 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=17.1
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+.+|.-+.+.||.|+|||..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 45778899999999999964
No 370
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.00 E-value=5 Score=41.38 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+.+++.||+|+|||.+
T Consensus 78 ~~lLL~GppGtGKTtl 93 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTA 93 (516)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 5899999999999975
No 371
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=48.94 E-value=5.1 Score=35.16 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-+++.|++|||||..
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999975
No 372
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=48.89 E-value=4.9 Score=37.16 Aligned_cols=16 Identities=25% Similarity=0.167 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.-++++|++|||||..
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 4689999999999975
No 373
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=48.58 E-value=5.7 Score=38.94 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=23.4
Q ss_pred CCChhhhhhhhcc--------ccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPIC--------LSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~--------~~~~--~vli~apTGsGKT~~ 76 (537)
.|..-|.+.+..+ +.|- .++..|.||||||++
T Consensus 77 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 77 DWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp CTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred CCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 4566777776543 3565 467799999999988
No 374
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=48.53 E-value=5.7 Score=38.82 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=23.2
Q ss_pred CCChhhhhhhhcc--------ccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPIC--------LSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~--------~~~~--~vli~apTGsGKT~~ 76 (537)
.|..-|.+.+..+ +.|- .++..|.||||||++
T Consensus 60 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 60 KPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred cCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceE
Confidence 4566777766443 3565 467799999999988
No 375
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=48.46 E-value=39 Score=33.50 Aligned_cols=75 Identities=24% Similarity=0.192 Sum_probs=50.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEc--------CcchhHhHHHh----ccCCcEEEeCCchhHHHHhc
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG--------GTSKMYQTRDL----CRGAEIVVATPGRLIDFLES 198 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~ 198 (537)
+.++||.++++.-+..+.+.+... ++++..++| +.+..++...+ ....+|+|+|. .+ .
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-~~----~- 430 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-VG----E- 430 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-GG----G-
T ss_pred CCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-cc----c-
Confidence 667999999999999999988754 677888888 65554443332 23578999993 22 2
Q ss_pred CcccccceeEEEecchh
Q psy10680 199 GTTNVNRITYLVLDEAD 215 (537)
Q Consensus 199 ~~~~~~~l~liV~DE~h 215 (537)
.-+++...++||+-+..
T Consensus 431 ~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 431 EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp GGGGSTTCCEEEESSCC
T ss_pred cCCCchhCCEEEEeCCC
Confidence 23456667888765543
No 376
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=48.31 E-value=6.3 Score=38.80 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=23.2
Q ss_pred CCChhhhhhhhc--------cccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPI--------CLSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~--------~~~~~--~vli~apTGsGKT~~ 76 (537)
.+..-|.+.+.. ++.|- .++..|.||||||++
T Consensus 74 ~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 74 GERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp CTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred cCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeE
Confidence 456667777653 34565 467799999999988
No 377
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=48.20 E-value=5.8 Score=38.53 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=23.0
Q ss_pred CCChhhhhhhhcc--------ccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPIC--------LSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~--------~~~~--~vli~apTGsGKT~~ 76 (537)
.+..-|.+.+..+ +.|- .++..|.||||||++
T Consensus 53 ~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 53 HGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp CTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeE
Confidence 4556677666543 3554 467799999999988
No 378
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=48.17 E-value=6.1 Score=38.51 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=22.8
Q ss_pred CCChhhhhhhhcc--------ccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPIC--------LSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~--------~~~~--~vli~apTGsGKT~~ 76 (537)
.+..-|.+.+..+ +.|- -++..|.||||||++
T Consensus 81 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 81 DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp CTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceee
Confidence 4555677666443 3565 467799999999988
No 379
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=48.13 E-value=5.9 Score=38.49 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=23.2
Q ss_pred CCChhhhhhhhc--------cccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPI--------CLSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~--------~~~~~--~vli~apTGsGKT~~ 76 (537)
.+..-|.+.+.. ++.|- .++..|.||||||++
T Consensus 65 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEE
Confidence 456667776654 33564 467799999999988
No 380
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=48.03 E-value=5.9 Score=38.43 Aligned_cols=32 Identities=31% Similarity=0.504 Sum_probs=23.1
Q ss_pred CCChhhhhhhhcc--------ccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPIC--------LSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~--------~~~~--~vli~apTGsGKT~~ 76 (537)
.|..-|.+.+..+ ++|. .++..|.||||||++
T Consensus 59 ~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 59 AEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred ecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEe
Confidence 4566677766543 3565 467799999999988
No 381
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=47.91 E-value=6.6 Score=35.17 Aligned_cols=20 Identities=25% Similarity=0.107 Sum_probs=17.1
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EETTCCEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45778899999999999965
No 382
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=47.69 E-value=5.5 Score=37.19 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.4
Q ss_pred hhccccCCcEEEEccCCCccccc
Q psy10680 54 WPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 54 i~~~~~~~~vli~apTGsGKT~~ 76 (537)
+..+..|.-++|.||+|+|||..
T Consensus 24 lggl~~G~i~~i~G~~GsGKTtl 46 (279)
T 1nlf_A 24 LPNMVAGTVGALVSPGGAGKSML 46 (279)
T ss_dssp ETTEETTSEEEEEESTTSSHHHH
T ss_pred ECCccCCCEEEEEcCCCCCHHHH
Confidence 34567888999999999999975
No 383
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=47.60 E-value=4.8 Score=49.86 Aligned_cols=20 Identities=40% Similarity=0.421 Sum_probs=17.3
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..+++++++||||+|||..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHH
T ss_pred HHCCCeEEEECCCCCCHHHH
Confidence 34678999999999999976
No 384
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=53.17 E-value=3.9 Score=34.92 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=47.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhc----cCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC----RGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
+.++||.++++.-+..++..++.. ++.+..++|+.+..++...+. ...+|+|+|. .+. . -+++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~~----~-Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VAA----R-GIDIPDV 99 (170)
Confidence 456899999999999888888643 677888888877655443332 2567999983 211 1 2345556
Q ss_pred eEEEec
Q psy10680 207 TYLVLD 212 (537)
Q Consensus 207 ~liV~D 212 (537)
++||.-
T Consensus 100 ~~Vi~~ 105 (170)
T 2yjt_D 100 SHVFNF 105 (170)
Confidence 666653
No 385
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=47.35 E-value=6.1 Score=38.03 Aligned_cols=32 Identities=31% Similarity=0.583 Sum_probs=22.5
Q ss_pred CCChhhhhhhhc-------cccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPI-------CLSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~-------~~~~~--~vli~apTGsGKT~~ 76 (537)
.|..-|.+.+.. ++.|- -++..|.||||||++
T Consensus 57 ~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 57 SPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp CTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred CCCCCcHhHHHHHHHHHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 455566665543 44665 467799999999988
No 386
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=47.32 E-value=5.9 Score=43.07 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
..++++.||+|+|||.+
T Consensus 201 ~~~vLL~G~pGtGKT~l 217 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAI 217 (758)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 35899999999999976
No 387
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=47.24 E-value=5.7 Score=35.00 Aligned_cols=15 Identities=33% Similarity=0.122 Sum_probs=13.0
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+.+.||.|||||.+
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999976
No 388
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=47.22 E-value=4.4 Score=37.29 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.4
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+..+++.|++|||||..
T Consensus 32 ~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTI 48 (253)
T ss_dssp CEEEEEESCGGGTTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34689999999999975
No 389
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=47.17 E-value=6.5 Score=35.46 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=16.8
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 27 i~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp EETTCEEEEEECTTSCHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44777889999999999964
No 390
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=47.14 E-value=6.1 Score=39.19 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCChhhhhhhhcc--------ccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPIC--------LSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~--------~~~~--~vli~apTGsGKT~~ 76 (537)
.+..-|.+.+..+ +.|- .++..|.||||||++
T Consensus 130 ~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 130 DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred ecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeE
Confidence 4566677766543 3554 467799999999988
No 391
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=47.11 E-value=6.2 Score=38.43 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=21.5
Q ss_pred CChhhhhhh--------hccccCCc--EEEEccCCCccccc
Q psy10680 46 PTSIQAQSW--------PICLSGRD--LIGIAQTGSGKTLS 76 (537)
Q Consensus 46 ~~~~Q~~ai--------~~~~~~~~--vli~apTGsGKT~~ 76 (537)
+..-|.+.+ +.+++|-| ++..|.||||||++
T Consensus 69 ~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 69 KYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred ccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceE
Confidence 344576554 33446654 67799999999988
No 392
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=47.08 E-value=5.8 Score=35.63 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.3
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
..+-+++.||+||||+..
T Consensus 28 k~kiI~llGpPGsGKgTq 45 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQ 45 (217)
T ss_dssp SCEEEEEECCTTCCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 335578899999999865
No 393
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=47.04 E-value=6.3 Score=33.86 Aligned_cols=15 Identities=27% Similarity=0.182 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-.+|+||+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 678999999999965
No 394
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=46.88 E-value=5.7 Score=34.87 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+.+.|++|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478999999999975
No 395
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=46.82 E-value=10 Score=36.31 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=14.7
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.++-+.+.+|+|+|||.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp SCEEEEEESSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345688899999999975
No 396
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=46.82 E-value=6.1 Score=38.70 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=22.5
Q ss_pred CCChhhhhhhhc-------cccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPI-------CLSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~-------~~~~~--~vli~apTGsGKT~~ 76 (537)
.|..-|.+.+.. ++.|. .++..|.||||||++
T Consensus 56 ~~~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 56 DGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp CTTCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred CCCCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEe
Confidence 455566666543 34665 467799999999988
No 397
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=46.71 E-value=6.3 Score=38.40 Aligned_cols=29 Identities=31% Similarity=0.475 Sum_probs=20.4
Q ss_pred hhhhhhhhcc--------ccCC--cEEEEccCCCccccc
Q psy10680 48 SIQAQSWPIC--------LSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 48 ~~Q~~ai~~~--------~~~~--~vli~apTGsGKT~~ 76 (537)
.-|.+.+..+ ++|. -++..|.||||||++
T Consensus 82 ~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 82 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceE
Confidence 4466655443 3565 467789999999988
No 398
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=46.65 E-value=6.4 Score=38.53 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=21.0
Q ss_pred hhhhhhhhcc--------ccCC--cEEEEccCCCccccc
Q psy10680 48 SIQAQSWPIC--------LSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 48 ~~Q~~ai~~~--------~~~~--~vli~apTGsGKT~~ 76 (537)
.-|.+.+..+ +.|- .++..|.||||||++
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 4576666443 4565 467799999999988
No 399
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=46.63 E-value=5.7 Score=43.22 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+.+|+.||+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5899999999999976
No 400
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=46.60 E-value=6.3 Score=38.43 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=23.4
Q ss_pred CCChhhhhhhhcc--------ccCC--cEEEEccCCCcccccc
Q psy10680 45 KPTSIQAQSWPIC--------LSGR--DLIGIAQTGSGKTLSL 77 (537)
Q Consensus 45 ~~~~~Q~~ai~~~--------~~~~--~vli~apTGsGKT~~~ 77 (537)
.|..-|.+.+..+ +.|- -++..|.||||||++.
T Consensus 64 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 64 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred eccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4566677666543 3565 4677999999999983
No 401
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=46.60 E-value=6.9 Score=35.73 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
....+++.||+|||||..
T Consensus 28 ~~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345799999999999975
No 402
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=46.55 E-value=5.9 Score=34.27 Aligned_cols=15 Identities=33% Similarity=0.195 Sum_probs=13.0
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-+++.|+.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378999999999975
No 403
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=46.25 E-value=6.9 Score=36.61 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=17.0
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 31 i~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp EETTSEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45778899999999999964
No 404
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=46.24 E-value=5.9 Score=40.58 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
+++++.||+|+|||+.
T Consensus 65 ~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHL 80 (499)
T ss_dssp SEEEEECSSSSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4699999999999975
No 405
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=46.05 E-value=7.2 Score=35.27 Aligned_cols=20 Identities=35% Similarity=0.303 Sum_probs=17.1
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+.+|+-+.+.||.|+|||..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45778899999999999964
No 406
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=46.00 E-value=12 Score=31.95 Aligned_cols=15 Identities=27% Similarity=0.067 Sum_probs=12.8
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-+.+.|+.|+|||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999965
No 407
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.81 E-value=6.2 Score=38.04 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
++++.||+|+|||..
T Consensus 48 ~~ll~Gp~G~GKTtl 62 (340)
T 1sxj_C 48 HLLFYGPPGTGKTST 62 (340)
T ss_dssp CEEEECSSSSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 489999999999975
No 408
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.59 E-value=6.4 Score=39.10 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=22.2
Q ss_pred CCChhhhhhhh-------ccccCCc--EEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWP-------ICLSGRD--LIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~-------~~~~~~~--vli~apTGsGKT~~ 76 (537)
.|..-|.+.+. .++.|-| ++..|.||||||++
T Consensus 117 ~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyT 157 (403)
T 4etp_A 117 DQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFT 157 (403)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceE
Confidence 44555666553 3446654 67799999999988
No 409
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=45.47 E-value=6.8 Score=38.56 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=23.2
Q ss_pred CCChhhhhhhhcc--------ccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPIC--------LSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~~--------~~~~--~vli~apTGsGKT~~ 76 (537)
.+..-|.+.+..+ +.|- .++..|.||||||++
T Consensus 110 ~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyT 151 (387)
T 2heh_A 110 DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHT 151 (387)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHH
T ss_pred ecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeE
Confidence 4566677766543 3554 467799999999988
No 410
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=45.45 E-value=6.8 Score=35.99 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+..+.|.||+|||||.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456789999999999965
No 411
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=45.44 E-value=7.1 Score=36.04 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=17.0
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+.+|.-+.+.||.|+|||..
T Consensus 30 i~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EeCCCEEEEECCCCCCHHHH
Confidence 45778899999999999964
No 412
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=45.42 E-value=7.5 Score=35.99 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=17.1
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 44778899999999999964
No 413
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.36 E-value=6.4 Score=39.14 Aligned_cols=32 Identities=38% Similarity=0.522 Sum_probs=21.9
Q ss_pred CCChhhhhhhh-------ccccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWP-------ICLSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~-------~~~~~~--~vli~apTGsGKT~~ 76 (537)
.|..-|.+.+. .++.|- .++..|.||||||++
T Consensus 115 ~~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 115 HPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp CTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 44555655553 344665 467799999999988
No 414
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=45.27 E-value=10 Score=36.97 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+.++||+|+|||..
T Consensus 156 ~g~vi~lvG~nGsGKTTl 173 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTS 173 (359)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCChHHHH
Confidence 456788999999999965
No 415
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=45.20 E-value=7 Score=33.08 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=15.8
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..|.-+.+.||.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4666788999999999963
No 416
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=45.20 E-value=7.9 Score=37.96 Aligned_cols=32 Identities=38% Similarity=0.506 Sum_probs=22.4
Q ss_pred CCChhhhhhhh-------ccccCC--cEEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWP-------ICLSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~-------~~~~~~--~vli~apTGsGKT~~ 76 (537)
.|..-|.+.+. .++.|- -++..|.||||||++
T Consensus 92 ~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 92 PPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp CTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred CCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceE
Confidence 34556666553 444665 467799999999998
No 417
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=45.14 E-value=5.6 Score=43.56 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.1
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..++.++++||+|+|||..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCCEEEECSCTTSSHHHH
T ss_pred CCCCeEEEECcCCCCHHHH
Confidence 3457899999999999975
No 418
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=44.96 E-value=5.9 Score=37.71 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=16.9
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.|+||+|+|||..
T Consensus 77 i~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHH
Confidence 34678899999999999964
No 419
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=44.92 E-value=7.4 Score=36.19 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=16.9
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 34 i~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp EETTCEEEEECCTTSCHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 44778899999999999964
No 420
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=44.89 E-value=6.6 Score=35.25 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.|++|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 421
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=44.86 E-value=6.5 Score=34.14 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=12.5
Q ss_pred EEEEccCCCccccc
Q psy10680 63 LIGIAQTGSGKTLS 76 (537)
Q Consensus 63 vli~apTGsGKT~~ 76 (537)
+++.|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999975
No 422
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=44.67 E-value=7.8 Score=35.55 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.1
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 32 i~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45778899999999999964
No 423
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=44.52 E-value=6.9 Score=38.34 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=13.7
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.-.++.||||+|||.+
T Consensus 26 gl~vi~G~NGaGKT~i 41 (371)
T 3auy_A 26 GIVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4578999999999965
No 424
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=44.49 E-value=11 Score=36.35 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+.++||+|+|||..
T Consensus 128 ~g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SSEEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788999999999965
No 425
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=44.37 E-value=7 Score=35.72 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=17.0
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45777899999999999965
No 426
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=44.31 E-value=15 Score=37.57 Aligned_cols=22 Identities=9% Similarity=-0.044 Sum_probs=17.9
Q ss_pred hccccCCcEEEEccCCCccccc
Q psy10680 55 PICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 55 ~~~~~~~~vli~apTGsGKT~~ 76 (537)
-.+..|.-++|.|++|+|||..
T Consensus 237 gGl~~G~l~li~G~pG~GKT~l 258 (503)
T 1q57_A 237 LGARGGEVIMVTSGSGMVMSTF 258 (503)
T ss_dssp CCCCTTCEEEEEESSCHHHHHH
T ss_pred cccCCCeEEEEeecCCCCchHH
Confidence 3455677899999999999974
No 427
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=44.23 E-value=28 Score=37.09 Aligned_cols=68 Identities=13% Similarity=0.103 Sum_probs=45.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh-ccCCcEEEeCCchhHHHHhcCcccccceeEE
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL-CRGAEIVVATPGRLIDFLESGTTNVNRITYL 209 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~li 209 (537)
+.++||.+|++.-++++++.++.. ++++..++|. ......... ....+|+|+|. .+..+ +++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e~G-IDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISEMG-ANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGGTT-CCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhhcc-eeeC-CcEE
Confidence 556999999999999999888754 6788888884 222222223 24678999994 23322 3444 6666
Q ss_pred E
Q psy10680 210 V 210 (537)
Q Consensus 210 V 210 (537)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 428
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=44.23 E-value=7.7 Score=35.39 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=16.9
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+.+|.-+.+.||.|+|||..
T Consensus 29 i~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44778899999999999964
No 429
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=44.20 E-value=6.7 Score=34.25 Aligned_cols=15 Identities=27% Similarity=0.175 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+.|.|++|||||.+
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999976
No 430
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=44.20 E-value=6.7 Score=38.47 Aligned_cols=33 Identities=33% Similarity=0.586 Sum_probs=23.5
Q ss_pred CCChhhhhhhhc--------cccCC--cEEEEccCCCcccccc
Q psy10680 45 KPTSIQAQSWPI--------CLSGR--DLIGIAQTGSGKTLSL 77 (537)
Q Consensus 45 ~~~~~Q~~ai~~--------~~~~~--~vli~apTGsGKT~~~ 77 (537)
.|..-|.+.+.. ++.|- -++..|.||||||++.
T Consensus 76 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 76 GPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceec
Confidence 455667777654 33565 4677999999999983
No 431
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=44.05 E-value=7.4 Score=41.00 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=17.8
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
.+..|..+++.||+|+|||..
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHH
Confidence 345778999999999999965
No 432
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=44.03 E-value=4.6 Score=44.22 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.2
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..++.+++.||+|+|||..
T Consensus 509 ~~~~~vLL~GppGtGKT~L 527 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHH
T ss_pred CCCceeEEECCCCCCHHHH
Confidence 3557899999999999975
No 433
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=43.88 E-value=7.3 Score=38.14 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=13.2
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-++|+||+|+|||..
T Consensus 25 ~~~i~G~NGaGKTTl 39 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSL 39 (365)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 577999999999965
No 434
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=43.74 E-value=58 Score=32.98 Aligned_cols=76 Identities=16% Similarity=0.058 Sum_probs=50.3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh----ccCCcEEEeCCchhHHHHhcCcccccce
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL----CRGAEIVVATPGRLIDFLESGTTNVNRI 206 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l 206 (537)
++..+++..+..-+..+.+.+... +.++..++|+.+..++...+ ....+|+|+|++.+.. -+++.++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v 417 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNL 417 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccC
Confidence 344555566666666677776643 33788899988766543332 2467899999755543 2467789
Q ss_pred eEEEecchh
Q psy10680 207 TYLVLDEAD 215 (537)
Q Consensus 207 ~liV~DE~h 215 (537)
++||+....
T Consensus 418 ~~vi~~~~~ 426 (510)
T 2oca_A 418 HHVVLAHGV 426 (510)
T ss_dssp EEEEESSCC
T ss_pred cEEEEeCCC
Confidence 999988776
No 435
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.73 E-value=7.6 Score=37.48 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=13.6
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
++++.||+|+|||..
T Consensus 38 ~~ll~Gp~G~GKTtl 52 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTR 52 (354)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 599999999999975
No 436
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=43.61 E-value=7.9 Score=35.26 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+..+.+.||.|+|||..
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45799999999999965
No 437
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=43.37 E-value=8.1 Score=35.80 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=16.7
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 29 i~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44677889999999999964
No 438
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=43.16 E-value=8.7 Score=33.57 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
|.-+.+.||+|+|||..
T Consensus 1 G~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCCEEEESCCSSCHHHH
T ss_pred CCEEEEECCCCChHHHH
Confidence 34678999999999965
No 439
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=42.78 E-value=8.4 Score=35.57 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=16.9
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+.+|.-+.+.||.|+|||..
T Consensus 38 i~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCcEEEEECCCCCCHHHH
Confidence 44777899999999999964
No 440
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=42.75 E-value=8.4 Score=35.81 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=17.0
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44778899999999999964
No 441
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=42.68 E-value=8.4 Score=35.77 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=16.9
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 30 i~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 44777889999999999964
No 442
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=42.55 E-value=8.4 Score=35.47 Aligned_cols=20 Identities=30% Similarity=0.320 Sum_probs=16.9
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+.+|.-+.+.||.|+|||..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp EETTCEEEEECCSSSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 45777889999999999965
No 443
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=42.48 E-value=13 Score=43.06 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=17.3
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|+.+-++||||+|||..
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL 1121 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTV 1121 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSH
T ss_pred ECCCCEEEEECCCCChHHHH
Confidence 45788999999999999964
No 444
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=42.46 E-value=11 Score=39.03 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.2
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
....+++|.|.||||||.+
T Consensus 212 ~k~pHlLIaG~TGSGKS~~ 230 (574)
T 2iut_A 212 AKMPHLLVAGTTGSGKSVG 230 (574)
T ss_dssp GGSCCEEEECCTTSSHHHH
T ss_pred hhCCeeEEECCCCCCHHHH
Confidence 3457999999999999975
No 445
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=42.33 E-value=8.5 Score=35.33 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=17.1
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45778899999999999965
No 446
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=42.25 E-value=8.6 Score=35.83 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.9
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.|.||.|+|||..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 44778899999999999964
No 447
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=42.13 E-value=8.7 Score=35.63 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.8
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+.+|.-+.+.||.|+|||..
T Consensus 47 i~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHH
Confidence 34677889999999999965
No 448
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=42.07 E-value=7.5 Score=37.92 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=22.4
Q ss_pred CCChhhhhhhhc--------cc-cCCc--EEEEccCCCccccc
Q psy10680 45 KPTSIQAQSWPI--------CL-SGRD--LIGIAQTGSGKTLS 76 (537)
Q Consensus 45 ~~~~~Q~~ai~~--------~~-~~~~--vli~apTGsGKT~~ 76 (537)
.|..-|.+.+.. ++ .|.+ ++..|.||||||++
T Consensus 59 ~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 59 DDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHH
T ss_pred cCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEE
Confidence 455567766543 22 3554 68899999999988
No 449
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=41.69 E-value=9.3 Score=35.10 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.0
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 23 i~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 45778899999999999964
No 450
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=41.61 E-value=7.8 Score=37.12 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=16.1
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..+..+++.||+|+|||..
T Consensus 120 i~~gsviLI~GpPGsGKTtL 139 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPL 139 (331)
T ss_dssp EEESEEEEEECSCSSSHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHH
Confidence 34456689999999999975
No 451
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=41.60 E-value=8.4 Score=38.71 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=21.7
Q ss_pred Chhhhhhhhcc--------ccCC--cEEEEccCCCccccc
Q psy10680 47 TSIQAQSWPIC--------LSGR--DLIGIAQTGSGKTLS 76 (537)
Q Consensus 47 ~~~Q~~ai~~~--------~~~~--~vli~apTGsGKT~~ 76 (537)
..-|.+.+..+ +.|- -++..|.||||||++
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 45677666443 4665 467799999999988
No 452
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=41.59 E-value=8.9 Score=35.92 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=16.9
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+.+|.-+.+.||.|+|||..
T Consensus 44 i~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 44778899999999999964
No 453
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=41.45 E-value=7.3 Score=42.32 Aligned_cols=15 Identities=40% Similarity=0.443 Sum_probs=13.7
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
++++.||||+|||..
T Consensus 523 ~~Ll~Gp~GtGKT~l 537 (758)
T 3pxi_A 523 SFIFLGPTGVGKTEL 537 (758)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 599999999999975
No 454
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=41.31 E-value=9 Score=37.64 Aligned_cols=20 Identities=25% Similarity=0.056 Sum_probs=16.5
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|+.+++.||+|+|||..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34567899999999999964
No 455
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=41.26 E-value=13 Score=38.00 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=14.7
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+.++||+|+|||..
T Consensus 292 ~GeVI~LVGpNGSGKTTL 309 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTT 309 (503)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCcccHHHH
Confidence 345688999999999965
No 456
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=40.87 E-value=11 Score=37.76 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..++++|++|+|||..
T Consensus 100 ~vI~ivG~~GvGKTTl 115 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTT 115 (432)
T ss_dssp CCEEEECCSSSSTTHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4788999999999975
No 457
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=40.75 E-value=8.5 Score=37.37 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.||+|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 479999999999975
No 458
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=40.59 E-value=8.5 Score=41.79 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+.++++.||+|+|||.+
T Consensus 207 ~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CCCeEEEcCCCCCHHHH
Confidence 46899999999999975
No 459
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=40.54 E-value=8 Score=34.37 Aligned_cols=16 Identities=25% Similarity=0.150 Sum_probs=13.8
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.-+.+.|+.|||||.+
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588999999999975
No 460
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.93 E-value=8.9 Score=36.23 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=13.7
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
++++.||+|+|||..
T Consensus 44 ~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 44 HMIISGMPGIGKTTS 58 (323)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 599999999999975
No 461
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=39.07 E-value=8.9 Score=36.08 Aligned_cols=22 Identities=5% Similarity=-0.052 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCCcEEEEeccc
Q psy10680 415 RDQTLRDFRSGYINVLIASDVA 436 (537)
Q Consensus 415 r~~~~~~f~~g~~~iLvaT~~l 436 (537)
-.+.++.++...+++.|+|+..
T Consensus 193 ~~e~L~~L~~~g~~~~v~T~k~ 214 (301)
T 1ltq_A 193 VVELSKMYALMGYQIVVVSGRE 214 (301)
T ss_dssp HHHHHHHHHHTTCEEEEEECSC
T ss_pred HHHHHHHHHHCCCeEEEEeCCC
Confidence 4567777777778888888754
No 462
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=39.00 E-value=5.3 Score=34.36 Aligned_cols=15 Identities=33% Similarity=0.229 Sum_probs=12.8
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-+.|+|++|+|||..
T Consensus 4 ~v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEEESCHHHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999965
No 463
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=38.89 E-value=8.8 Score=33.72 Aligned_cols=17 Identities=29% Similarity=-0.083 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+.-+.+.|++|+|||..
T Consensus 22 ~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SEEEEEEECTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34688999999999965
No 464
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=38.70 E-value=9 Score=32.67 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=14.7
Q ss_pred hhhhhhccccCCcEEEEccCCCccccc
Q psy10680 50 QAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 50 Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
+...-+.-...-.+++.|++|+|||..
T Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKSsl 37 (181)
T 2h17_A 11 SSGLVPRGSQEHKVIIVGLDNAGKTTI 37 (181)
T ss_dssp ----------CEEEEEEEETTSSHHHH
T ss_pred cCCccCCCCceeEEEEECCCCCCHHHH
Confidence 333333333445899999999999964
No 465
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=38.53 E-value=9.4 Score=33.46 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=13.1
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+.+.|++|||||.+
T Consensus 14 iIgltG~~GSGKSTv 28 (192)
T 2grj_A 14 VIGVTGKIGTGKSTV 28 (192)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577899999999976
No 466
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=38.48 E-value=10 Score=33.24 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=16.0
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..+..+.+.|++|+|||..
T Consensus 24 ~~~~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSA 42 (210)
T ss_dssp SCSEEEEEEECTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4556799999999999965
No 467
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.47 E-value=8.8 Score=48.21 Aligned_cols=20 Identities=40% Similarity=0.459 Sum_probs=16.8
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..++.++++||||+|||..
T Consensus 1301 l~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHH
T ss_pred HHCCCcEEEECCCCCCHHHH
Confidence 34668999999999999954
No 468
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=38.35 E-value=9.3 Score=36.01 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=12.9
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-+.|+||+|||||..
T Consensus 33 ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577899999999965
No 469
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=38.21 E-value=8.7 Score=47.62 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=24.6
Q ss_pred cCCCCCCChhhhh----hhhccccCCcEEEEccCCCccccc
Q psy10680 40 NSGYGKPTSIQAQ----SWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 40 ~~g~~~~~~~Q~~----ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
..|+ .+++.+.. .+..+..++.++++||||||||.+
T Consensus 900 ~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~ 939 (2695)
T 4akg_A 900 RSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTAT 939 (2695)
T ss_dssp HHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHH
T ss_pred HcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHH
Confidence 3555 55555532 223444567999999999999987
No 470
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=38.19 E-value=5.8 Score=35.07 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=12.4
Q ss_pred EEEEccCCCccccc
Q psy10680 63 LIGIAQTGSGKTLS 76 (537)
Q Consensus 63 vli~apTGsGKT~~ 76 (537)
+++.|+.|||||..
T Consensus 3 I~i~G~~GsGKsTl 16 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL 16 (214)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 68899999999965
No 471
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=38.17 E-value=8.9 Score=41.64 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=13.8
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
++++.||||+|||.+
T Consensus 490 ~~ll~G~~GtGKT~l 504 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEV 504 (758)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 699999999999975
No 472
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=38.04 E-value=11 Score=33.39 Aligned_cols=16 Identities=38% Similarity=0.295 Sum_probs=13.5
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.-.+|.||+|+|||.+
T Consensus 24 ~~~~I~G~NgsGKSti 39 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEEcCCCCCHHHH
Confidence 4578899999999965
No 473
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=37.81 E-value=24 Score=31.02 Aligned_cols=51 Identities=35% Similarity=0.686 Sum_probs=39.1
Q ss_pred ceeecCchhHHHHhhhCCcccccceeeeccchhhhhcC-CChHHHHHHHHhh
Q psy10680 243 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDM-GFEPQIRKIIQMT 293 (537)
Q Consensus 243 ~~~saTp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 293 (537)
.++.+||+.+...+.........+..+++||++.+... ++...+..+....
T Consensus 136 ~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~ 187 (220)
T 1t6n_A 136 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMT 187 (220)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTS
T ss_pred CEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhC
Confidence 48899999999888876777778899999999998763 5555555555443
No 474
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=37.69 E-value=19 Score=33.97 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.1
Q ss_pred CCcEEEEccCCCccccc
Q psy10680 60 GRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 60 ~~~vli~apTGsGKT~~ 76 (537)
+.-+.+.+++|+|||..
T Consensus 98 ~~vi~i~G~~G~GKTT~ 114 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTT 114 (297)
T ss_dssp SEEEEEECSSCSSTTHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45677899999999975
No 475
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=37.27 E-value=12 Score=35.30 Aligned_cols=19 Identities=37% Similarity=0.338 Sum_probs=16.3
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
.+|+-+.+.||.|+|||..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3677889999999999965
No 476
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=36.21 E-value=10 Score=34.17 Aligned_cols=19 Identities=26% Similarity=0.108 Sum_probs=15.9
Q ss_pred ccCCcEEEEccCCCccccc
Q psy10680 58 LSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 58 ~~~~~vli~apTGsGKT~~ 76 (537)
..|.-+++.||.|+|||..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCCEEEEEECCTTSCHHHH
T ss_pred CCCeEEEEEcCCCCCHHHH
Confidence 3567799999999999965
No 477
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=35.99 E-value=12 Score=30.85 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.|++|+|||..
T Consensus 3 ki~v~G~~~~GKSsl 17 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSL 17 (161)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999964
No 478
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=35.92 E-value=11 Score=34.54 Aligned_cols=15 Identities=27% Similarity=0.049 Sum_probs=13.3
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-+.|.|++|||||.+
T Consensus 24 iI~I~G~~GSGKST~ 38 (252)
T 1uj2_A 24 LIGVSGGTASGKSSV 38 (252)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999976
No 479
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=35.81 E-value=11 Score=34.41 Aligned_cols=18 Identities=22% Similarity=-0.036 Sum_probs=14.7
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|.-+-|.||.|||||..
T Consensus 24 ~g~iigI~G~~GsGKSTl 41 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTV 41 (245)
T ss_dssp CSEEEEEECSTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 445678899999999976
No 480
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=35.79 E-value=12 Score=36.17 Aligned_cols=16 Identities=38% Similarity=0.295 Sum_probs=13.4
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
.-.+++||+|+|||..
T Consensus 24 ~~~~i~G~NGsGKS~l 39 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSL 39 (339)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3457999999999975
No 481
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=35.73 E-value=12 Score=32.13 Aligned_cols=15 Identities=40% Similarity=0.255 Sum_probs=13.0
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-+++.|++|+|||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478999999999964
No 482
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=35.60 E-value=16 Score=34.89 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=18.4
Q ss_pred hhhhhhccccCCcEEEEccCCCccccc
Q psy10680 50 QAQSWPICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 50 Q~~ai~~~~~~~~vli~apTGsGKT~~ 76 (537)
+.+.+.. +....++|.||.|+|||..
T Consensus 21 el~~L~~-l~~~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 21 EIEKLKG-LRAPITLVLGLRRTGKSSI 46 (357)
T ss_dssp HHHHHHH-TCSSEEEEEESTTSSHHHH
T ss_pred HHHHHHH-hcCCcEEEECCCCCCHHHH
Confidence 3344433 3336899999999999975
No 483
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=35.31 E-value=13 Score=31.98 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
-.+++.|++|+|||..
T Consensus 22 ~ki~v~G~~~~GKSsl 37 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTI 37 (190)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3799999999999964
No 484
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=35.26 E-value=21 Score=42.94 Aligned_cols=21 Identities=29% Similarity=0.056 Sum_probs=18.1
Q ss_pred ccccCCcEEEEccCCCccccc
Q psy10680 56 ICLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 56 ~~~~~~~vli~apTGsGKT~~ 76 (537)
.+..++++++.+|+|+|||..
T Consensus 1077 gi~~g~~vll~G~~GtGKT~l 1097 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTL 1097 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHH
Confidence 355778999999999999986
No 485
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=35.19 E-value=11 Score=35.22 Aligned_cols=15 Identities=33% Similarity=0.195 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
-+.|.|+.|||||.+
T Consensus 77 iI~I~G~~GSGKSTv 91 (281)
T 2f6r_A 77 VLGLTGISGSGKSSV 91 (281)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999976
No 486
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=35.18 E-value=12 Score=30.76 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.|++|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (166)
T 2ce2_X 5 KLVVVGAGGVGKSAL 19 (166)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999964
No 487
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=35.12 E-value=11 Score=34.11 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccccc
Q psy10680 61 RDLIGIAQTGSGKTLS 76 (537)
Q Consensus 61 ~~vli~apTGsGKT~~ 76 (537)
..+.+.||+|+|||.+
T Consensus 10 ~~i~i~G~~GsGKsTl 25 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSV 25 (233)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999975
No 488
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=35.12 E-value=13 Score=36.25 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=16.7
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 27 i~~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTL 46 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHH
T ss_pred EcCCCEEEEECCCCchHHHH
Confidence 34677889999999999964
No 489
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=34.96 E-value=39 Score=33.98 Aligned_cols=54 Identities=7% Similarity=0.028 Sum_probs=38.3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHh-ccCCcEEEeCC
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL-CRGAEIVVATP 189 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp 189 (537)
++++||.+|++.-+..+++.++.. ++++..+++.... ...... ....+|+|+|.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~-~~~~~f~~g~~~iLVaT~ 244 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYD-TEYPKCKNGDWDFVITTD 244 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCC-CCGGGSSSCCCSEEEESS
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHH-HHHhhccCCCceEEEECC
Confidence 456899999999999999998764 5677788775322 222222 23578999995
No 490
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=34.94 E-value=13 Score=30.92 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=13.4
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.|++|+|||..
T Consensus 7 ~i~v~G~~~~GKssl 21 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSM 21 (168)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 689999999999964
No 491
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=34.84 E-value=23 Score=40.18 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=55.2
Q ss_pred HhCceeEEEEeeccCcccccccccc---ccccccccccCCCCHHHHHHHHHHHhcCCCcEEEEecc-ccc---CCCcCCc
Q psy10680 373 VAGIERWVFMEINHNGTETKHYGVS---SSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDV-ASR---GLDVEDI 445 (537)
Q Consensus 373 ~~~~~~~if~~~~~~~~~l~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~iLvaT~~-l~~---Gidi~~~ 445 (537)
..+...++.+.++.-+.+. ...+. ..++.+..+||+++..++....+.+..|..+|+|+|.- +.. -++..++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~-~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQT-LERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHH-HHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCC
T ss_pred hcCCeEEEEechHHHHHHH-HHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCc
Confidence 3455666777777666665 33333 35678889999999988888899999999999999962 211 1456678
Q ss_pred cEEEE
Q psy10680 446 KYVVN 450 (537)
Q Consensus 446 ~~Vi~ 450 (537)
.+||.
T Consensus 198 ~~lVi 202 (1104)
T 4ddu_A 198 DFVFV 202 (1104)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88875
No 492
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=34.39 E-value=24 Score=36.32 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=0.0
Q ss_pred cccCCcEEEEccCCCccccccccccchhccccccCCCCCcccccccccCccccccchhhHhHhhhcCCCCCCCCCceEEE
Q psy10680 57 CLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALV 136 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~li 136 (537)
+..|.-++|.||+|+|||.. +..++...... |.++++
T Consensus 278 i~~G~i~~i~G~~GsGKSTL------------------------------------l~~l~g~~~~~-------G~~vi~ 314 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLL------------------------------------VSRFVENACAN-------KERAIL 314 (525)
T ss_dssp EESSCEEEEEECTTSSHHHH------------------------------------HHHHHHHHHTT-------TCCEEE
T ss_pred CCCCcEEEEEeCCCCCHHHH------------------------------------HHHHHHHHHhC-------CCCEEE
Q ss_pred Ecc
Q psy10680 137 LAP 139 (537)
Q Consensus 137 l~P 139 (537)
+++
T Consensus 315 ~~~ 317 (525)
T 1tf7_A 315 FAY 317 (525)
T ss_dssp EES
T ss_pred EEE
No 493
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=34.38 E-value=50 Score=34.98 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=48.1
Q ss_pred CceEEEEcccHHHHHHHHHHHHHhcccceeeEEEEEcCcchhHhHHHhccCCcEEEeCCchhHHHHhcCcccccceeEEE
Q psy10680 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLV 210 (537)
Q Consensus 131 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~l~liV 210 (537)
+.++||.+|++.-++++++.++.. ++++..++|+.+..++. ..+.+|+|+|. .+..+ +++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er~---~~~~~VLVATd-----VaerG-IDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVIP---TIGDVVVVATD-----ALMTG-YTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGSC---SSSCEEEEECT-----THHHH-CCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHHH---hCCCcEEEECC-----hHHcc-CCCC-CcEEE
Confidence 667999999999999999998743 67889999998766532 24558999995 22222 2343 77777
No 494
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.25 E-value=9.7 Score=42.02 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=13.8
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.||||+|||.+
T Consensus 590 ~vLl~Gp~GtGKT~l 604 (854)
T 1qvr_A 590 SFLFLGPTGVGKTEL 604 (854)
T ss_dssp EEEEBSCSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999975
No 495
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=34.24 E-value=13 Score=33.49 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.+..+.+.|+.|||||.+
T Consensus 15 ~~~~i~i~G~~gsGKst~ 32 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTV 32 (236)
T ss_dssp CCCEEEEECSSCSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345688999999999975
No 496
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=34.16 E-value=14 Score=36.02 Aligned_cols=20 Identities=30% Similarity=0.275 Sum_probs=16.9
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+..|.-+.+.||.|+|||..
T Consensus 38 i~~Ge~~~llGpnGsGKSTL 57 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTI 57 (355)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCcHHHH
Confidence 44778899999999999965
No 497
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=34.07 E-value=14 Score=34.24 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=16.3
Q ss_pred cccCCcEEEEccCCCccccc
Q psy10680 57 CLSGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 57 ~~~~~~vli~apTGsGKT~~ 76 (537)
+. |.-+.+.||.|+|||..
T Consensus 28 i~-Ge~~~i~G~NGsGKSTL 46 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTL 46 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHH
T ss_pred EC-CEEEEEECCCCCCHHHH
Confidence 45 77899999999999965
No 498
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=34.07 E-value=13 Score=30.84 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=13.5
Q ss_pred cEEEEccCCCccccc
Q psy10680 62 DLIGIAQTGSGKTLS 76 (537)
Q Consensus 62 ~vli~apTGsGKT~~ 76 (537)
.+++.|++|+|||..
T Consensus 8 ~i~v~G~~~~GKSsl 22 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSI 22 (170)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 689999999999964
No 499
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=33.92 E-value=13 Score=35.40 Aligned_cols=18 Identities=11% Similarity=-0.082 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.++.++|.||.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 467899999999999975
No 500
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=33.70 E-value=13 Score=32.06 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCccccc
Q psy10680 59 SGRDLIGIAQTGSGKTLS 76 (537)
Q Consensus 59 ~~~~vli~apTGsGKT~~ 76 (537)
.|+.+++.|+.|+|||..
T Consensus 15 ~G~gvli~G~SGaGKStl 32 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSEL 32 (181)
T ss_dssp TTEEEEEEESSSSSHHHH
T ss_pred CCEEEEEEcCCCCCHHHH
Confidence 567899999999999965
Done!