Your job contains 1 sequence.
>psy10680
MKQSVSVRLVSLEARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSG
RDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHI
LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCR
GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCR
GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVV
PVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV
FLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLR
DFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLF
TPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPITTRQWKREYWRRKSSEILAEW
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10680
(537 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 426 2.9e-88 3
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 426 2.9e-88 3
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 419 5.2e-87 3
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 419 5.2e-87 3
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 419 5.2e-87 3
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 419 5.2e-87 3
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 419 5.2e-87 3
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 419 5.6e-87 3
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 421 8.5e-87 3
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 419 2.8e-86 3
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 418 4.5e-86 3
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 412 4.8e-86 3
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 419 5.7e-86 3
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 417 2.2e-84 3
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 420 1.8e-83 3
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 420 1.8e-83 3
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 420 1.8e-83 3
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 415 2.2e-83 3
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 420 1.4e-82 3
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 420 1.5e-82 3
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 420 1.6e-82 3
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 420 1.6e-82 3
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 420 2.8e-82 3
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 415 1.7e-80 3
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 414 4.5e-80 3
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 416 2.4e-79 3
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh... 383 3.7e-76 3
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 392 4.0e-76 3
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 553 3.2e-67 2
UNIPROTKB|B4DLW8 - symbol:DDX5 "Probable ATP-dependent RN... 372 7.8e-67 2
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 359 1.3e-66 3
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 359 1.3e-66 3
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 338 3.3e-65 3
TAIR|locus:2222617 - symbol:AT5G14610 species:3702 "Arabi... 316 9.5e-62 3
UNIPROTKB|E9PT29 - symbol:Ddx17 "Protein Ddx17" species:1... 337 3.7e-61 3
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi... 313 3.9e-59 3
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 478 4.2e-59 2
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 481 6.9e-59 2
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 290 2.7e-58 3
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 477 4.8e-58 2
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 475 7.8e-58 2
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 292 1.8e-57 3
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 468 2.3e-56 2
UNIPROTKB|G3MYF0 - symbol:LOC100300937 "Uncharacterized p... 282 3.0e-56 3
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 316 8.6e-56 3
UNIPROTKB|F1NVJ6 - symbol:DDX43 "Uncharacterized protein"... 301 1.3e-55 3
UNIPROTKB|F1P0H1 - symbol:DDX42 "ATP-dependent RNA helica... 323 2.4e-55 3
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo... 322 3.6e-55 3
ZFIN|ZDB-GENE-080204-77 - symbol:ddx43 "DEAD (Asp-Glu-Ala... 284 3.9e-55 3
UNIPROTKB|E1BJD2 - symbol:DDX42 "Uncharacterized protein"... 322 4.0e-55 3
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 341 7.5e-55 3
UNIPROTKB|Q5F485 - symbol:DDX42 "ATP-dependent RNA helica... 323 1.6e-54 3
UNIPROTKB|F1NJ40 - symbol:DDX42 "ATP-dependent RNA helica... 323 1.6e-54 3
FB|FBgn0037549 - symbol:CG7878 species:7227 "Drosophila m... 442 5.7e-53 2
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"... 426 1.4e-52 2
TAIR|locus:2074899 - symbol:AT3G09620 species:3702 "Arabi... 336 1.6e-52 3
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al... 320 4.7e-52 3
ASPGD|ASPL0000055571 - symbol:AN1266 species:162425 "Emer... 304 6.2e-52 3
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 278 1.9e-50 3
UNIPROTKB|F1S0I6 - symbol:DDX43 "Uncharacterized protein"... 409 2.1e-50 2
DICTYBASE|DDB_G0293064 - symbol:DDB_G0293064 species:4468... 293 2.5e-50 3
ASPGD|ASPL0000069536 - symbol:AN7424 species:162425 "Emer... 255 4.4e-50 3
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein... 399 5.0e-50 2
MGI|MGI:1349406 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) bo... 285 5.5e-50 3
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p... 399 6.1e-50 2
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 279 3.1e-49 3
RGD|2314437 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box po... 285 3.5e-49 3
ZFIN|ZDB-GENE-030131-1565 - symbol:ddx3 "DEAD (Asp-Glu-Al... 276 4.3e-49 3
RGD|1309586 - symbol:RGD1309586 "similar to probable ATP-... 279 7.8e-49 3
MGI|MGI:91842 - symbol:D1Pas1 "DNA segment, Chr 1, Pasteu... 279 7.9e-49 3
UNIPROTKB|G5E631 - symbol:DDX3X "Uncharacterized protein"... 279 8.0e-49 3
UNIPROTKB|J9P0V9 - symbol:DDX3X "Uncharacterized protein"... 279 8.1e-49 3
UNIPROTKB|O00571 - symbol:DDX3X "ATP-dependent RNA helica... 279 8.1e-49 3
MGI|MGI:103064 - symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/Hi... 279 8.1e-49 3
RGD|1564771 - symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box po... 279 8.1e-49 3
UNIPROTKB|E2RRQ7 - symbol:DDX3X "Uncharacterized protein"... 279 1.2e-48 3
UNIPROTKB|B4DXX7 - symbol:DDX3Y "Uncharacterized protein"... 279 1.2e-48 3
UNIPROTKB|O15523 - symbol:DDX3Y "ATP-dependent RNA helica... 279 1.3e-48 3
UNIPROTKB|F1NIX2 - symbol:DDX3X "Uncharacterized protein"... 276 1.8e-48 3
UNIPROTKB|F1NIX1 - symbol:DDX3X "Uncharacterized protein"... 276 1.8e-48 3
ZFIN|ZDB-GENE-030131-6215 - symbol:ddx23 "DEAD (Asp-Glu-A... 289 1.9e-48 3
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 294 3.6e-48 3
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 294 3.6e-48 3
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 294 3.6e-48 3
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 294 3.6e-48 3
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 270 3.6e-48 3
UNIPROTKB|D3IVZ2 - symbol:DDX3Y "Uncharacterized protein"... 273 4.2e-48 3
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph... 273 4.7e-48 4
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 263 6.3e-48 3
ASPGD|ASPL0000077157 - symbol:AN10557 species:162425 "Eme... 268 7.0e-48 3
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 421 1.1e-47 2
UNIPROTKB|I3LNN1 - symbol:DDX23 "Uncharacterized protein"... 292 1.8e-47 3
UNIPROTKB|I3LDV0 - symbol:DDX3Y "Uncharacterized protein"... 279 1.9e-47 3
CGD|CAL0004832 - symbol:orf19.7392 species:5476 "Candida ... 266 2.1e-47 3
SGD|S000003046 - symbol:DBP3 "RNA-Dependent ATPase, membe... 385 3.3e-47 2
UNIPROTKB|Q86TM3 - symbol:DDX53 "Probable ATP-dependent R... 396 6.0e-47 2
SGD|S000005730 - symbol:DED1 "ATP-dependent DEAD (Asp-Glu... 261 1.1e-46 3
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 346 1.6e-46 2
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 346 1.6e-46 2
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 346 1.6e-46 2
WARNING: Descriptions of 784 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 426 (155.0 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 83/125 (66%), Positives = 96/125 (76%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + +SR R++ C+YGG
Sbjct: 134 LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGA 193
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG EI +ATPGRLIDFLE+G TN+ R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 194 PKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 253
Query: 230 IQMTR 234
+ R
Sbjct: 254 VDQIR 258
Score = 353 (129.3 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AMGIHGDKSQ RD L +F+ G +LIA+DVASRGLDVED+K+V+NYD+P+++E+Y+H
Sbjct: 356 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 415
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARSTKTG +YT FTP N + DLI +L EA+Q + +LL L
Sbjct: 416 RIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQL 462
Score = 235 (87.8 bits), Expect = 2.2e-61, Sum P(3) = 2.2e-61
Identities = 46/59 (77%), Positives = 50/59 (84%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE+G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 200 RDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 258
Score = 164 (62.8 bits), Expect = 5.7e-54, Sum P(3) = 5.7e-54
Identities = 31/43 (72%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE+G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 216 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 258
Score = 135 (52.6 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ + +PT+IQAQ WP+ LSG D++G+AQTGSGKTLS
Sbjct: 98 QRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 135
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 426 (155.0 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 83/125 (66%), Positives = 96/125 (76%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + +SR R++ C+YGG
Sbjct: 142 LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGA 201
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG EI +ATPGRLIDFLE+G TN+ R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 202 PKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 261
Query: 230 IQMTR 234
+ R
Sbjct: 262 VDQIR 266
Score = 353 (129.3 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AMGIHGDKSQ RD L +F+ G +LIA+DVASRGLDVED+K+V+NYD+P+++E+Y+H
Sbjct: 364 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 423
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARSTKTG +YT FTP N + DLI +L EA+Q + +LL L
Sbjct: 424 RIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQL 470
Score = 235 (87.8 bits), Expect = 2.6e-61, Sum P(3) = 2.6e-61
Identities = 46/59 (77%), Positives = 50/59 (84%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE+G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 208 RDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 266
Score = 164 (62.8 bits), Expect = 7.0e-54, Sum P(3) = 7.0e-54
Identities = 31/43 (72%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE+G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 224 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 266
Score = 135 (52.6 bits), Expect = 2.9e-88, Sum P(3) = 2.9e-88
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ + +PT+IQAQ WP+ LSG D++G+AQTGSGKTLS
Sbjct: 106 QRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 143
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 419 (152.6 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 82/125 (65%), Positives = 94/125 (75%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R R++ C+YGG
Sbjct: 146 LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 230 IQMTR 234
+ R
Sbjct: 266 VDQIR 270
Score = 353 (129.3 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AMGIHGDKSQ RD L +F+ G +LIA+DVASRGLDVED+K+V+NYD+P+++E+Y+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARSTKTG +YT FTP N + DLI +L EA+Q + +LL L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL 474
Score = 233 (87.1 bits), Expect = 7.0e-61, Sum P(3) = 7.0e-61
Identities = 46/59 (77%), Positives = 49/59 (83%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 212 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 162 (62.1 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 134 (52.2 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT+IQAQ WP+ LSG D++G+AQTGSGKTLS
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Score = 37 (18.1 bits), Expect = 7.9e-77, Sum P(3) = 7.9e-77
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 28 IASDVASRGLGKNSGYGKPTSIQAQSWPICLSGR 61
++S + R G++ G+G P +++ P LSG+
Sbjct: 1 MSSYSSDRDRGRDRGFGAPRFGGSRTGP--LSGK 32
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 419 (152.6 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 82/125 (65%), Positives = 94/125 (75%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R R++ C+YGG
Sbjct: 146 LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 230 IQMTR 234
+ R
Sbjct: 266 VDQIR 270
Score = 353 (129.3 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AMGIHGDKSQ RD L +F+ G +LIA+DVASRGLDVED+K+V+NYD+P+++E+Y+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARSTKTG +YT FTP N + DLI +L EA+Q + +LL L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL 474
Score = 233 (87.1 bits), Expect = 7.0e-61, Sum P(3) = 7.0e-61
Identities = 46/59 (77%), Positives = 49/59 (83%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 212 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 162 (62.1 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 134 (52.2 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT+IQAQ WP+ LSG D++G+AQTGSGKTLS
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 419 (152.6 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 82/125 (65%), Positives = 94/125 (75%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R R++ C+YGG
Sbjct: 146 LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 230 IQMTR 234
+ R
Sbjct: 266 VDQIR 270
Score = 353 (129.3 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AMGIHGDKSQ RD L +F+ G +LIA+DVASRGLDVED+K+V+NYD+P+++E+Y+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARSTKTG +YT FTP N + DLI +L EA+Q + +LL L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL 474
Score = 233 (87.1 bits), Expect = 7.0e-61, Sum P(3) = 7.0e-61
Identities = 46/59 (77%), Positives = 49/59 (83%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 212 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 162 (62.1 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 134 (52.2 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT+IQAQ WP+ LSG D++G+AQTGSGKTLS
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 419 (152.6 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 82/125 (65%), Positives = 94/125 (75%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R R++ C+YGG
Sbjct: 146 LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 230 IQMTR 234
+ R
Sbjct: 266 VDQIR 270
Score = 353 (129.3 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AMGIHGDKSQ RD L +F+ G +LIA+DVASRGLDVED+K+V+NYD+P+++E+Y+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARSTKTG +YT FTP N + DLI +L EA+Q + +LL L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL 474
Score = 233 (87.1 bits), Expect = 7.0e-61, Sum P(3) = 7.0e-61
Identities = 46/59 (77%), Positives = 49/59 (83%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 212 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 162 (62.1 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 134 (52.2 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT+IQAQ WP+ LSG D++G+AQTGSGKTLS
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 419 (152.6 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 82/125 (65%), Positives = 94/125 (75%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R R++ C+YGG
Sbjct: 146 LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 230 IQMTR 234
+ R
Sbjct: 266 VDQIR 270
Score = 353 (129.3 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AMGIHGDKSQ RD L +F+ G +LIA+DVASRGLDVED+K+V+NYD+P+++E+Y+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARSTKTG +YT FTP N + DLI +L EA+Q + +LL L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL 474
Score = 233 (87.1 bits), Expect = 7.0e-61, Sum P(3) = 7.0e-61
Identities = 46/59 (77%), Positives = 49/59 (83%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 212 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 162 (62.1 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 134 (52.2 bits), Expect = 5.2e-87, Sum P(3) = 5.2e-87
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT+IQAQ WP+ LSG D++G+AQTGSGKTLS
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 419 (152.6 bits), Expect = 5.6e-87, Sum P(3) = 5.6e-87
Identities = 82/125 (65%), Positives = 94/125 (75%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R R++ C+YGG
Sbjct: 146 LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 230 IQMTR 234
+ R
Sbjct: 266 VDQIR 270
Score = 353 (129.3 bits), Expect = 5.6e-87, Sum P(3) = 5.6e-87
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AMGIHGDKSQ RD L +F+ G +LIA+DVASRGLDVED+K+V+NYD+P+++E+Y+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARSTKTG +YT FTP N + DLI +L EA+Q + +LL L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL 474
Score = 233 (87.1 bits), Expect = 7.1e-61, Sum P(3) = 7.1e-61
Identities = 46/59 (77%), Positives = 49/59 (83%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 212 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 162 (62.1 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 134 (52.2 bits), Expect = 5.6e-87, Sum P(3) = 5.6e-87
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT+IQAQ WP+ LSG D++G+AQTGSGKTLS
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
Score = 37 (18.1 bits), Expect = 8.4e-77, Sum P(3) = 8.4e-77
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 28 IASDVASRGLGKNSGYGKPTSIQAQSWPICLSGR 61
++S + R G++ G+G P +++ P LSG+
Sbjct: 1 MSSYSSDRDRGRDRGFGAPRFGGSRTGP--LSGK 32
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 421 (153.3 bits), Expect = 8.5e-87, Sum P(3) = 8.5e-87
Identities = 82/125 (65%), Positives = 95/125 (76%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + + RI+ C+YGG
Sbjct: 148 LSYLLPAIVHINHQPFLEHGDGPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGA 207
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG EI +ATPGRLIDFLE+G TN+ R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 208 PKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKI 267
Query: 230 IQMTR 234
+ R
Sbjct: 268 VDQIR 272
Score = 348 (127.6 bits), Expect = 8.5e-87, Sum P(3) = 8.5e-87
Identities = 63/108 (58%), Positives = 86/108 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AMGIHGDK+Q RD L +F+ G +LIA+DVASRGLDVED+K+V+N+D+P+N+E+Y+H
Sbjct: 370 AMGIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIH 429
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLA 510
RIGRTARS KTG +YT FTP N +A DL+ +L EA+Q + +L+ +A
Sbjct: 430 RIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMA 477
Score = 235 (87.8 bits), Expect = 2.0e-60, Sum P(3) = 2.0e-60
Identities = 46/59 (77%), Positives = 50/59 (84%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE+G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 214 RDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 272
Score = 164 (62.8 bits), Expect = 5.2e-53, Sum P(3) = 5.2e-53
Identities = 31/43 (72%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE+G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 230 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 272
Score = 135 (52.6 bits), Expect = 8.5e-87, Sum P(3) = 8.5e-87
Identities = 24/31 (77%), Positives = 28/31 (90%)
Query: 46 PTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
PT IQAQ WP+ LSG+D++GIAQTGSGKTLS
Sbjct: 119 PTPIQAQGWPVALSGKDMVGIAQTGSGKTLS 149
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 419 (152.6 bits), Expect = 2.8e-86, Sum P(3) = 2.8e-86
Identities = 82/125 (65%), Positives = 94/125 (75%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R R++ C+YGG
Sbjct: 146 LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 206 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 230 IQMTR 234
+ R
Sbjct: 266 VDQIR 270
Score = 346 (126.9 bits), Expect = 2.8e-86, Sum P(3) = 2.8e-86
Identities = 65/107 (60%), Positives = 84/107 (78%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AMGIHGDKSQ R L +F+ G +LIA+DVASRGLDVED+K+V+NYD+P+++E+Y+H
Sbjct: 368 AMGIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARSTKTG +YT FTP N + DLI +L EA+Q + +LL L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL 474
Score = 233 (87.1 bits), Expect = 7.0e-60, Sum P(3) = 7.0e-60
Identities = 46/59 (77%), Positives = 49/59 (83%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 212 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 162 (62.1 bits), Expect = 1.8e-52, Sum P(3) = 1.8e-52
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 134 (52.2 bits), Expect = 2.8e-86, Sum P(3) = 2.8e-86
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT+IQAQ WP+ LSG D++G+AQTGSGKTLS
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 418 (152.2 bits), Expect = 4.5e-86, Sum P(3) = 4.5e-86
Identities = 81/125 (64%), Positives = 99/125 (79%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR--IRHACLYGGT 169
Y+LPA+ HI P + G+GPIALVLAPTRELAQQIQ+V+ + + IRH C++GG+
Sbjct: 291 YMLPAIVHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGS 350
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
SK+ Q RDL RG E+++ATPGRLIDFLE+ TN+ R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 351 SKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKI 410
Query: 230 IQMTR 234
I+ R
Sbjct: 411 IEQIR 415
Score = 351 (128.6 bits), Expect = 4.5e-86, Sum P(3) = 4.5e-86
Identities = 68/130 (52%), Positives = 91/130 (70%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y A IHGDK+Q RD L+DFR+G N+LIA+DVASRGLDVED++YV+NYD+P+++ENY
Sbjct: 516 YNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENY 575
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPITTRQ 520
VHRIGRT R + G +YT FTP N +A++LI +L EA Q P + LL A++ P +
Sbjct: 576 VHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEEAGQ-TPSQALLDLARSMPSSGGY 634
Query: 521 WKREYWRRKS 530
+ W S
Sbjct: 635 RGNKRWNNNS 644
Score = 240 (89.5 bits), Expect = 7.8e-62, Sum P(3) = 7.8e-62
Identities = 47/70 (67%), Positives = 56/70 (80%)
Query: 231 QMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
++ + RDL RG E+++ATPGRLIDFLE+ TN+ R TYLVLDEADRMLDMGFEPQIRKII
Sbjct: 352 KVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKII 411
Query: 291 QMTRHAHPVV 300
+ R VV
Sbjct: 412 EQIRPDRQVV 421
Score = 160 (61.4 bits), Expect = 1.8e-53, Sum P(3) = 1.8e-53
Identities = 31/43 (72%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE+ TN+ R TYLVLDEADRMLDMGFEPQIRKII+ R
Sbjct: 373 LIDFLENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 415
Score = 154 (59.3 bits), Expect = 4.5e-86, Sum P(3) = 4.5e-86
Identities = 28/38 (73%), Positives = 33/38 (86%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
K G+ KPT+IQ+Q WPI LSGRDL+GIAQTGSGKTL+
Sbjct: 253 KRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLA 290
Score = 38 (18.4 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQC 90
+A G GK Y P + + P + G I + + + L+ I++ G C
Sbjct: 280 IAQTGSGKTLAYMLPAIVHIGNQPPIIRGEGPIALVLAPT-RELAQQIQSVVRDYGHLC 337
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 412 (150.1 bits), Expect = 4.8e-86, Sum P(3) = 4.8e-86
Identities = 81/125 (64%), Positives = 93/125 (74%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R R++ C+YGG
Sbjct: 146 LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 205
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG E +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 206 PKGPQIRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 265
Query: 230 IQMTR 234
+ R
Sbjct: 266 VDQIR 270
Score = 353 (129.3 bits), Expect = 4.8e-86, Sum P(3) = 4.8e-86
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AMGIHGDKSQ RD L +F+ G +LIA+DVASRGLDVED+K+V+NYD+P+++E+Y+H
Sbjct: 368 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 427
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARSTKTG +YT FTP N + DLI +L EA+Q + +LL L
Sbjct: 428 RIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL 474
Score = 226 (84.6 bits), Expect = 3.8e-60, Sum P(3) = 3.8e-60
Identities = 45/59 (76%), Positives = 48/59 (81%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG E +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 212 RDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 162 (62.1 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 228 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 270
Score = 134 (52.2 bits), Expect = 4.8e-86, Sum P(3) = 4.8e-86
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT+IQAQ WP+ LSG D++G+AQTGSGKTLS
Sbjct: 114 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 147
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 419 (152.6 bits), Expect = 5.7e-86, Sum P(3) = 5.7e-86
Identities = 82/125 (65%), Positives = 94/125 (75%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R R++ C+YGG
Sbjct: 203 LSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGA 262
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 263 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 322
Query: 230 IQMTR 234
+ R
Sbjct: 323 VDQIR 327
Score = 353 (129.3 bits), Expect = 5.7e-86, Sum P(3) = 5.7e-86
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AMGIHGDKSQ RD L +F+ G +LIA+DVASRGLDVED+K+V+NYD+P+++E+Y+H
Sbjct: 425 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 484
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARSTKTG +YT FTP N + DLI +L EA+Q + +LL L
Sbjct: 485 RIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL 531
Score = 233 (87.1 bits), Expect = 2.0e-60, Sum P(3) = 2.0e-60
Identities = 46/59 (77%), Positives = 49/59 (83%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 269 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 327
Score = 162 (62.1 bits), Expect = 5.2e-53, Sum P(3) = 5.2e-53
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 285 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 327
Score = 134 (52.2 bits), Expect = 5.7e-86, Sum P(3) = 5.7e-86
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT+IQAQ WP+ LSG D++G+AQTGSGKTLS
Sbjct: 171 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 204
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 417 (151.9 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
Identities = 81/123 (65%), Positives = 93/123 (75%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R++ C+YGG K
Sbjct: 144 YLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPK 203
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG EI +ATPGRLIDFLE+G TN+ R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 204 GPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 263
Query: 232 MTR 234
R
Sbjct: 264 QIR 266
Score = 337 (123.7 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
Identities = 65/107 (60%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AM IHGDKSQ RD L +FRSG +LIA+DVASRGLDVED+K+V+NYD+P+++E+YVH
Sbjct: 364 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 423
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARST G +YT FTP N +A++LI +L EA+Q + +L+ L
Sbjct: 424 RIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 470
Score = 236 (88.1 bits), Expect = 1.5e-59, Sum P(3) = 1.5e-59
Identities = 58/121 (47%), Positives = 73/121 (60%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RDL RG EI +ATPGRLIDFLE+G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 208 RDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 267
Query: 296 AHPVVPVSL-FISERRDTILHFLESGTT-NVNRITYLVLDEADRMLDMGFEPQI-RKIIQ 352
+ S + E R FL+ NV + +++D+ E + K+IQ
Sbjct: 268 DRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQ 327
Query: 353 M 353
+
Sbjct: 328 L 328
Score = 164 (62.8 bits), Expect = 5.0e-52, Sum P(3) = 5.0e-52
Identities = 31/43 (72%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE+G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 224 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 266
Score = 123 (48.4 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ + +PT IQ Q +P+ LSGRD++GIAQTGSGKTL+
Sbjct: 107 DQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLA 143
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 420 (152.9 bits), Expect = 1.8e-83, Sum P(3) = 1.8e-83
Identities = 82/123 (66%), Positives = 93/123 (75%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R++ C+YGG K
Sbjct: 146 YLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPK 205
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 206 GPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 265
Query: 232 MTR 234
R
Sbjct: 266 QIR 268
Score = 337 (123.7 bits), Expect = 1.8e-83, Sum P(3) = 1.8e-83
Identities = 65/107 (60%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AM IHGDKSQ RD L +FRSG +LIA+DVASRGLDVED+K+V+NYD+P+++E+YVH
Sbjct: 366 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 425
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARST G +YT FTP N +A++LI +L EA+Q + +L+ L
Sbjct: 426 RIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 472
Score = 242 (90.2 bits), Expect = 5.1e-58, Sum P(3) = 5.1e-58
Identities = 60/121 (49%), Positives = 73/121 (60%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 210 RDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 269
Query: 296 AHPVVPVSL-FISERRDTILHFLESGTT-NVNRITYLVLDEADRMLDMGFEPQI-RKIIQ 352
+ S + E R FL T NV + +++D+ E + K+IQ
Sbjct: 270 DRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ 329
Query: 353 M 353
+
Sbjct: 330 L 330
Score = 167 (63.8 bits), Expect = 3.5e-50, Sum P(3) = 3.5e-50
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 226 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 268
Score = 122 (48.0 bits), Expect = 1.8e-83, Sum P(3) = 1.8e-83
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT IQ Q +P+ LSGRD++GIAQTGSGKTL+
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLA 145
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 420 (152.9 bits), Expect = 1.8e-83, Sum P(3) = 1.8e-83
Identities = 82/123 (66%), Positives = 93/123 (75%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R++ C+YGG K
Sbjct: 146 YLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPK 205
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 206 GPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 265
Query: 232 MTR 234
R
Sbjct: 266 QIR 268
Score = 337 (123.7 bits), Expect = 1.8e-83, Sum P(3) = 1.8e-83
Identities = 65/107 (60%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AM IHGDKSQ RD L +FRSG +LIA+DVASRGLDVED+K+V+NYD+P+++E+YVH
Sbjct: 366 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 425
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARST G +YT FTP N +A++LI +L EA+Q + +L+ L
Sbjct: 426 RIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 472
Score = 242 (90.2 bits), Expect = 5.1e-58, Sum P(3) = 5.1e-58
Identities = 60/121 (49%), Positives = 73/121 (60%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 210 RDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 269
Query: 296 AHPVVPVSL-FISERRDTILHFLESGTT-NVNRITYLVLDEADRMLDMGFEPQI-RKIIQ 352
+ S + E R FL T NV + +++D+ E + K+IQ
Sbjct: 270 DRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ 329
Query: 353 M 353
+
Sbjct: 330 L 330
Score = 167 (63.8 bits), Expect = 3.5e-50, Sum P(3) = 3.5e-50
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 226 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 268
Score = 122 (48.0 bits), Expect = 1.8e-83, Sum P(3) = 1.8e-83
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT IQ Q +P+ LSGRD++GIAQTGSGKTL+
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLA 145
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 420 (152.9 bits), Expect = 1.8e-83, Sum P(3) = 1.8e-83
Identities = 82/123 (66%), Positives = 93/123 (75%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R++ C+YGG K
Sbjct: 146 YLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPK 205
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 206 GPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 265
Query: 232 MTR 234
R
Sbjct: 266 QIR 268
Score = 337 (123.7 bits), Expect = 1.8e-83, Sum P(3) = 1.8e-83
Identities = 65/107 (60%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AM IHGDKSQ RD L +FRSG +LIA+DVASRGLDVED+K+V+NYD+P+++E+YVH
Sbjct: 366 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 425
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARST G +YT FTP N +A++LI +L EA+Q + +L+ L
Sbjct: 426 RIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 472
Score = 242 (90.2 bits), Expect = 5.1e-58, Sum P(3) = 5.1e-58
Identities = 60/121 (49%), Positives = 73/121 (60%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 210 RDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 269
Query: 296 AHPVVPVSL-FISERRDTILHFLESGTT-NVNRITYLVLDEADRMLDMGFEPQI-RKIIQ 352
+ S + E R FL T NV + +++D+ E + K+IQ
Sbjct: 270 DRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ 329
Query: 353 M 353
+
Sbjct: 330 L 330
Score = 167 (63.8 bits), Expect = 3.5e-50, Sum P(3) = 3.5e-50
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 226 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 268
Score = 122 (48.0 bits), Expect = 1.8e-83, Sum P(3) = 1.8e-83
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT IQ Q +P+ LSGRD++GIAQTGSGKTL+
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLA 145
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 415 (151.1 bits), Expect = 2.2e-83, Sum P(3) = 2.2e-83
Identities = 82/123 (66%), Positives = 93/123 (75%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + ++ RI+ C+YGG K
Sbjct: 149 YLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPK 208
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 209 GPQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 268
Query: 232 MTR 234
R
Sbjct: 269 QIR 271
Score = 339 (124.4 bits), Expect = 2.2e-83, Sum P(3) = 2.2e-83
Identities = 66/107 (61%), Positives = 84/107 (78%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AM IHGDKSQ RD L +FRSG +LIA+DVASRGLDVED+K+V+NYD+P+++E+YVH
Sbjct: 369 AMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 428
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARST G +YT FTP N +A+DL+ +L EA Q + +LL L
Sbjct: 429 RIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEARQAINPKLLQL 475
Score = 232 (86.7 bits), Expect = 9.5e-58, Sum P(3) = 9.5e-58
Identities = 46/59 (77%), Positives = 49/59 (83%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 213 RDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 271
Score = 161 (61.7 bits), Expect = 2.5e-50, Sum P(3) = 2.5e-50
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 229 LIDFLEVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 271
Score = 128 (50.1 bits), Expect = 2.2e-83, Sum P(3) = 2.2e-83
Identities = 23/34 (67%), Positives = 31/34 (91%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT+IQAQ +P+ LSGRD++GIAQTGSGKTL+
Sbjct: 115 FKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLA 148
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 420 (152.9 bits), Expect = 1.4e-82, Sum P(3) = 1.4e-82
Identities = 82/123 (66%), Positives = 93/123 (75%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R++ C+YGG K
Sbjct: 225 YLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPK 284
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 285 GPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 344
Query: 232 MTR 234
R
Sbjct: 345 QIR 347
Score = 337 (123.7 bits), Expect = 1.4e-82, Sum P(3) = 1.4e-82
Identities = 65/107 (60%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AM IHGDKSQ RD L +FRSG +LIA+DVASRGLDVED+K+V+NYD+P+++E+YVH
Sbjct: 445 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 504
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARST G +YT FTP N +A++LI +L EA+Q + +L+ L
Sbjct: 505 RIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 551
Score = 242 (90.2 bits), Expect = 1.4e-57, Sum P(3) = 1.4e-57
Identities = 60/121 (49%), Positives = 73/121 (60%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 289 RDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 348
Query: 296 AHPVVPVSL-FISERRDTILHFLESGTT-NVNRITYLVLDEADRMLDMGFEPQI-RKIIQ 352
+ S + E R FL T NV + +++D+ E + K+IQ
Sbjct: 349 DRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ 408
Query: 353 M 353
+
Sbjct: 409 L 409
Score = 167 (63.8 bits), Expect = 9.6e-50, Sum P(3) = 9.6e-50
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 305 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 347
Score = 122 (48.0 bits), Expect = 1.4e-82, Sum P(3) = 1.4e-82
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT IQ Q +P+ LSGRD++GIAQTGSGKTL+
Sbjct: 191 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLA 224
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 420 (152.9 bits), Expect = 1.5e-82, Sum P(3) = 1.5e-82
Identities = 82/123 (66%), Positives = 93/123 (75%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R++ C+YGG K
Sbjct: 225 YLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPK 284
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 285 GPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 344
Query: 232 MTR 234
R
Sbjct: 345 QIR 347
Score = 337 (123.7 bits), Expect = 1.5e-82, Sum P(3) = 1.5e-82
Identities = 65/107 (60%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AM IHGDKSQ RD L +FRSG +LIA+DVASRGLDVED+K+V+NYD+P+++E+YVH
Sbjct: 445 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 504
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARST G +YT FTP N +A++LI +L EA+Q + +L+ L
Sbjct: 505 RIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 551
Score = 242 (90.2 bits), Expect = 1.4e-57, Sum P(3) = 1.4e-57
Identities = 60/121 (49%), Positives = 73/121 (60%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 289 RDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 348
Query: 296 AHPVVPVSL-FISERRDTILHFLESGTT-NVNRITYLVLDEADRMLDMGFEPQI-RKIIQ 352
+ S + E R FL T NV + +++D+ E + K+IQ
Sbjct: 349 DRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ 408
Query: 353 M 353
+
Sbjct: 409 L 409
Score = 167 (63.8 bits), Expect = 9.8e-50, Sum P(3) = 9.8e-50
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 305 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 347
Score = 122 (48.0 bits), Expect = 1.5e-82, Sum P(3) = 1.5e-82
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT IQ Q +P+ LSGRD++GIAQTGSGKTL+
Sbjct: 191 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLA 224
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 420 (152.9 bits), Expect = 1.6e-82, Sum P(3) = 1.6e-82
Identities = 82/123 (66%), Positives = 93/123 (75%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R++ C+YGG K
Sbjct: 227 YLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPK 286
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 287 GPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 346
Query: 232 MTR 234
R
Sbjct: 347 QIR 349
Score = 337 (123.7 bits), Expect = 1.6e-82, Sum P(3) = 1.6e-82
Identities = 65/107 (60%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AM IHGDKSQ RD L +FRSG +LIA+DVASRGLDVED+K+V+NYD+P+++E+YVH
Sbjct: 447 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 506
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARST G +YT FTP N +A++LI +L EA+Q + +L+ L
Sbjct: 507 RIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 553
Score = 242 (90.2 bits), Expect = 1.5e-57, Sum P(3) = 1.5e-57
Identities = 60/121 (49%), Positives = 73/121 (60%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 291 RDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 350
Query: 296 AHPVVPVSL-FISERRDTILHFLESGTT-NVNRITYLVLDEADRMLDMGFEPQI-RKIIQ 352
+ S + E R FL T NV + +++D+ E + K+IQ
Sbjct: 351 DRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ 410
Query: 353 M 353
+
Sbjct: 411 L 411
Score = 167 (63.8 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 307 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 349
Score = 122 (48.0 bits), Expect = 1.6e-82, Sum P(3) = 1.6e-82
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT IQ Q +P+ LSGRD++GIAQTGSGKTL+
Sbjct: 193 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLA 226
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 420 (152.9 bits), Expect = 1.6e-82, Sum P(3) = 1.6e-82
Identities = 82/123 (66%), Positives = 93/123 (75%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R++ C+YGG K
Sbjct: 227 YLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPK 286
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 287 GPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 346
Query: 232 MTR 234
R
Sbjct: 347 QIR 349
Score = 337 (123.7 bits), Expect = 1.6e-82, Sum P(3) = 1.6e-82
Identities = 65/107 (60%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AM IHGDKSQ RD L +FRSG +LIA+DVASRGLDVED+K+V+NYD+P+++E+YVH
Sbjct: 447 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 506
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARST G +YT FTP N +A++LI +L EA+Q + +L+ L
Sbjct: 507 RIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 553
Score = 242 (90.2 bits), Expect = 1.5e-57, Sum P(3) = 1.5e-57
Identities = 60/121 (49%), Positives = 73/121 (60%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 291 RDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 350
Query: 296 AHPVVPVSL-FISERRDTILHFLESGTT-NVNRITYLVLDEADRMLDMGFEPQI-RKIIQ 352
+ S + E R FL T NV + +++D+ E + K+IQ
Sbjct: 351 DRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ 410
Query: 353 M 353
+
Sbjct: 411 L 411
Score = 167 (63.8 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 307 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 349
Score = 122 (48.0 bits), Expect = 1.6e-82, Sum P(3) = 1.6e-82
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT IQ Q +P+ LSGRD++GIAQTGSGKTL+
Sbjct: 193 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLA 226
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 420 (152.9 bits), Expect = 2.8e-82, Sum P(3) = 2.8e-82
Identities = 82/123 (66%), Positives = 93/123 (75%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPA+ HI P LE GDGPI LVLAPTRELAQQ+Q V + + R++ C+YGG K
Sbjct: 146 YLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPK 205
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 206 GPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 265
Query: 232 MTR 234
R
Sbjct: 266 QIR 268
Score = 326 (119.8 bits), Expect = 2.8e-82, Sum P(3) = 2.8e-82
Identities = 65/109 (59%), Positives = 85/109 (77%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGL--DVEDIKYVVNYDFPDNTENY 460
AM IHGDKSQ RD L +FRSG +LIA+DVASRGL DVED+K+V+NYD+P+++E+Y
Sbjct: 366 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFVINYDYPNSSEDY 425
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
VHRIGRTARST G +YT FTP N +A++LI +L EA+Q + +L+ L
Sbjct: 426 VHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 474
Score = 242 (90.2 bits), Expect = 1.5e-56, Sum P(3) = 1.5e-56
Identities = 60/121 (49%), Positives = 73/121 (60%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RDL RG EI +ATPGRLIDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 210 RDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 269
Query: 296 AHPVVPVSL-FISERRDTILHFLESGTT-NVNRITYLVLDEADRMLDMGFEPQI-RKIIQ 352
+ S + E R FL T NV + +++D+ E + K+IQ
Sbjct: 270 DRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ 329
Query: 353 M 353
+
Sbjct: 330 L 330
Score = 167 (63.8 bits), Expect = 1.0e-48, Sum P(3) = 1.0e-48
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 226 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 268
Score = 122 (48.0 bits), Expect = 2.8e-82, Sum P(3) = 2.8e-82
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT IQ Q +P+ LSGRD++GIAQTGSGKTL+
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLA 145
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 415 (151.1 bits), Expect = 1.7e-80, Sum P(3) = 1.7e-80
Identities = 82/123 (66%), Positives = 95/123 (77%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
YILPA+ HI L+ GDGPIALVLAPTRELAQQIQ V + F + +R+ C++GG K
Sbjct: 335 YILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPK 394
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG EIV+ATPGRLIDFL +G+TN+ R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 395 GGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVS 454
Query: 232 MTR 234
R
Sbjct: 455 QIR 457
Score = 314 (115.6 bits), Expect = 1.7e-80, Sum P(3) = 1.7e-80
Identities = 60/113 (53%), Positives = 81/113 (71%)
Query: 402 RAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYV 461
R IHGDKSQ RD LR+FRSG N+L+A+DVA+RGLDV+ IKYV+N+D+P N+E+Y+
Sbjct: 556 RCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYI 615
Query: 462 HRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNK 514
HRIGRT RS G S+ FT N +A+ L+D+L EA+Q + L LA ++
Sbjct: 616 HRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNSR 668
Score = 238 (88.8 bits), Expect = 4.4e-55, Sum P(3) = 4.4e-55
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EIV+ATPGRLIDFL +G+TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 399 RDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR 457
Score = 161 (61.7 bits), Expect = 4.9e-47, Sum P(3) = 4.9e-47
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FL +G+TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 415 LIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIR 457
Score = 130 (50.8 bits), Expect = 1.7e-80, Sum P(3) = 1.7e-80
Identities = 23/37 (62%), Positives = 29/37 (78%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTL 75
+ GY PT+IQAQ WPI +SG + +GIA+TGSGKTL
Sbjct: 297 RRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTL 333
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 414 (150.8 bits), Expect = 4.5e-80, Sum P(3) = 4.5e-80
Identities = 82/125 (65%), Positives = 92/125 (73%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y LP + HI P L GDGPI LVLAPTRELA QIQ S F + RIR+ C+YGG
Sbjct: 165 LSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGV 224
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG+EIV+ATPGRLID LE G TN+ R+TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 225 PKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKI 284
Query: 230 IQMTR 234
+ R
Sbjct: 285 VDQIR 289
Score = 279 (103.3 bits), Expect = 4.5e-80, Sum P(3) = 4.5e-80
Identities = 53/105 (50%), Positives = 72/105 (68%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHGDK Q RD L++FR+G +++A+DVA+RG+DV+ I YV+NYD P N E+YVH
Sbjct: 387 ALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVH 446
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLL 507
RIGRT R+ TG + + FT N LI I+ EA+Q +P LL
Sbjct: 447 RIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELL 491
Score = 239 (89.2 bits), Expect = 3.8e-53, Sum P(3) = 3.8e-53
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG+EIV+ATPGRLID LE G TN+ R+TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 231 RDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289
Score = 159 (61.0 bits), Expect = 8.4e-45, Sum P(3) = 8.4e-45
Identities = 30/43 (69%), Positives = 35/43 (81%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ LE G TN+ R+TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 247 LIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 289
Score = 143 (55.4 bits), Expect = 4.5e-80, Sum P(3) = 4.5e-80
Identities = 26/38 (68%), Positives = 30/38 (78%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
K G+ KPT IQ Q WP+ LSGRD++GIA TGSGKTLS
Sbjct: 129 KAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLS 166
Score = 38 (18.4 bits), Expect = 3.4e-42, Sum P(3) = 3.4e-42
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSG 60
+A+ G GK Y P + + P+ G
Sbjct: 156 IAATGSGKTLSYCLPGIVHINAQPLLAPG 184
Score = 37 (18.1 bits), Expect = 5.8e-69, Sum P(3) = 5.8e-69
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 36 GLGKNSGYGKPTSIQAQSW 54
G G S Y +P + +W
Sbjct: 45 GFGGRSNYNQPQELIKPNW 63
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 416 (151.5 bits), Expect = 2.4e-79, Sum P(3) = 2.4e-79
Identities = 81/125 (64%), Positives = 95/125 (76%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y LP++ HI P+L+ GDGPI LVLAPTRELA QIQ S F ++ RIR+ C+YGG
Sbjct: 179 LSYCLPSIVHINAQPQLQYGDGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGA 238
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG EI +ATPGRLID LE+G TN+ R+TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 239 PKGPQIRDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKI 298
Query: 230 IQMTR 234
+ R
Sbjct: 299 VDQIR 303
Score = 268 (99.4 bits), Expect = 2.4e-79, Sum P(3) = 2.4e-79
Identities = 56/127 (44%), Positives = 76/127 (59%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF E Y + S + A+ IHGDK Q RD L +FR G ++++A+DVA+RG
Sbjct: 379 VFASTKRTCDEITTY-LRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARG 437
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
+DV+ I +V+NYD P N E+YVHRIGRT R +G + + FT N DL I+ EA+
Sbjct: 438 IDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREAN 497
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 498 QTVPPEL 504
Score = 237 (88.5 bits), Expect = 1.1e-51, Sum P(3) = 1.1e-51
Identities = 45/59 (76%), Positives = 50/59 (84%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLID LE+G TN+ R+TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 245 RDLARGVEICIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 303
Score = 162 (62.1 bits), Expect = 7.7e-44, Sum P(3) = 7.7e-44
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ LE+G TN+ R+TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 261 LIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIR 303
Score = 145 (56.1 bits), Expect = 2.4e-79, Sum P(3) = 2.4e-79
Identities = 27/38 (71%), Positives = 31/38 (81%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
K+ G+ KPT IQ Q WP+ LSGRD+IGIA TGSGKTLS
Sbjct: 143 KDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLS 180
Score = 37 (18.1 bits), Expect = 3.8e-55, Sum P(3) = 3.8e-55
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 500 QFVPDRLLLLAAKNKPITTRQWKREY 525
Q PDR L+ + P +Q R+Y
Sbjct: 301 QIRPDRQTLMWSATWPKEVQQLTRDY 326
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 383 (139.9 bits), Expect = 3.7e-76, Sum P(3) = 3.7e-76
Identities = 75/123 (60%), Positives = 93/123 (75%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LPAL HI K + G+GP LVL PTRELAQQ+Q V F ++ ++ CL+GG SK
Sbjct: 183 FMLPALVHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASK 242
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG +IVVATPGRL+DFL++GTTN+ + +YLVLDEADRMLDMGFEPQI+KII
Sbjct: 243 GPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIG 302
Query: 232 MTR 234
R
Sbjct: 303 QIR 305
Score = 326 (119.8 bits), Expect = 3.7e-76, Sum P(3) = 3.7e-76
Identities = 62/134 (46%), Positives = 93/134 (69%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
+F+E E + + + IHGDK+Q RD L++F++G +++A+DVA+RG
Sbjct: 381 IFVETKRKADELTR-AMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARG 439
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LDV+DIK+V+NYD+P+N+E+YVHRIGRT RS K G +YT FT N +KA+DL+ +L+EA
Sbjct: 440 LDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAK 499
Query: 500 QFVPDRLLLLAAKN 513
Q VP L +A ++
Sbjct: 500 QTVPQALRDMANRS 513
Score = 229 (85.7 bits), Expect = 1.9e-56, Sum P(3) = 1.9e-56
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ RDL RG +IVVATPGRL+DFL++GTTN+ + +YLVLDEADRMLDMGFEPQI+KII
Sbjct: 245 QARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQI 304
Query: 294 R 294
R
Sbjct: 305 R 305
Score = 158 (60.7 bits), Expect = 5.1e-49, Sum P(3) = 5.1e-49
Identities = 30/43 (69%), Positives = 37/43 (86%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
+L FL++GTTN+ + +YLVLDEADRMLDMGFEPQI+KII R
Sbjct: 263 LLDFLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIR 305
Score = 127 (49.8 bits), Expect = 3.7e-76, Sum P(3) = 3.7e-76
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 3 QSVSVRLVSLEAR-LPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGR 61
Q VS V+LE R +P + + + GK + KPT IQ+ SWPI +SGR
Sbjct: 111 QWVSANQVTLEGRGVPRPVFEFNEAPLPGQIHELLYGK---FQKPTVIQSISWPIAMSGR 167
Query: 62 DLIGIAQTGSGKTLSLTI 79
D+I IA+TGSGKTL+ +
Sbjct: 168 DIISIAKTGSGKTLAFML 185
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 392 (143.0 bits), Expect = 4.0e-76, Sum P(3) = 4.0e-76
Identities = 79/123 (64%), Positives = 91/123 (73%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LP++ HI P L E DGPI LVLAPTRELA QIQ + F T +I + C+YGG SK
Sbjct: 438 FLLPSIVHINAQPVLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASK 497
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q L +G EIV+ATPGRLID LESG TN+ R+TYLVLDEADRMLDMGFEPQIRKII
Sbjct: 498 HTQVAALKKGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIS 557
Query: 232 MTR 234
R
Sbjct: 558 QIR 560
Score = 317 (116.6 bits), Expect = 4.0e-76, Sum P(3) = 4.0e-76
Identities = 67/144 (46%), Positives = 94/144 (65%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF E G + + S ++++GIHG+KSQ RD L F++G + ++IA+DVASRG
Sbjct: 634 VFAE-TRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRG 692
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD++DIKYVVNYDFP+ E Y+HRIGRTAR+ +G+SY+L T N A +LI +L EA
Sbjct: 693 LDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVLTEAK 752
Query: 500 QFVPDRLLLLAAKNKPITTRQWKR 523
Q +P L L+ P T+ K+
Sbjct: 753 QKIPIELSNLSVT--PSTSSNTKK 774
Score = 232 (86.7 bits), Expect = 5.5e-55, Sum P(3) = 5.5e-55
Identities = 46/62 (74%), Positives = 51/62 (82%)
Query: 233 TRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 292
T+ L +G EIV+ATPGRLID LESG TN+ R+TYLVLDEADRMLDMGFEPQIRKII
Sbjct: 499 TQVAALKKGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQ 558
Query: 293 TR 294
R
Sbjct: 559 IR 560
Score = 166 (63.5 bits), Expect = 4.3e-48, Sum P(3) = 4.3e-48
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ LESG TN+ R+TYLVLDEADRMLDMGFEPQIRKII R
Sbjct: 518 LIDILESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR 560
Score = 134 (52.2 bits), Expect = 4.0e-76, Sum P(3) = 4.0e-76
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+G+ PT IQ+Q+WPI L GRD+IG+A+TGSGKTL+ +
Sbjct: 402 AGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLL 440
Score = 40 (19.1 bits), Expect = 2.9e-66, Sum P(3) = 2.9e-66
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 36 GLGKNSGYGKPTS 48
G ++GY KPTS
Sbjct: 169 GSSNSNGYSKPTS 181
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 553 (199.7 bits), Expect = 3.2e-67, Sum P(2) = 3.2e-67
Identities = 127/279 (45%), Positives = 174/279 (62%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ RDL RG EIV+ATPGRLIDFLE GTT++ R TYLVLDEADRMLDMGFEPQIRKI+Q
Sbjct: 273 QARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQI 332
Query: 294 RHAHPVVPVSL-FISERRDTILHFLESGT-TNVNRITYLVLDEADRMLDMGFEPQIRKII 351
R V+ S + E R FL + N+ ++ +++D+ E + K++
Sbjct: 333 RPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENE--KLM 390
Query: 352 QMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKS 411
++ + T + + +F+E E +S +RA IHGDKS
Sbjct: 391 KLIKLLTDISAENET----------KTIIFVETKKRVDEITR-NISRQGWRACAIHGDKS 439
Query: 412 QWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARST 471
Q RD L FR+G ++L+A+DVA+RGLDV+D+K+V+NYD+P N+E+YVHRIGRT RS
Sbjct: 440 QQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSN 499
Query: 472 KTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLA 510
TG +YTLFT N NKA DLI +L EA+Q + +L+ +A
Sbjct: 500 NTGTAYTLFTHSNANKANDLIQVLREANQTINPKLMNMA 538
Score = 433 (157.5 bits), Expect = 2.3e-55, Sum P(3) = 2.3e-55
Identities = 85/123 (69%), Positives = 96/123 (78%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPA+ HI P+LE GDGPIALVLAPTRELAQQIQ V F +R+ C++GG K
Sbjct: 211 YVLPAVVHINNQPRLERGDGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPK 270
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG EIV+ATPGRLIDFLE GTT++ R TYLVLDEADRMLDMGFEPQIRKI+Q
Sbjct: 271 GQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQ 330
Query: 232 MTR 234
R
Sbjct: 331 QIR 333
Score = 154 (59.3 bits), Expect = 3.2e-67, Sum P(2) = 3.2e-67
Identities = 26/41 (63%), Positives = 34/41 (82%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+ G+ KPT+IQAQ WPI +SGRDL+G+AQTGSGKTL+ +
Sbjct: 173 RKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVL 213
Score = 42 (19.8 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 16/64 (25%), Positives = 24/64 (37%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCG 91
VA G GK Y P + + P G I + + + L+ I+ + GS
Sbjct: 200 VAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPT-RELAQQIQQVAIEFGSNTH 258
Query: 92 RSNT 95
NT
Sbjct: 259 VRNT 262
Score = 37 (18.1 bits), Expect = 2.3e-55, Sum P(3) = 2.3e-55
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 500 QFVPDRLLLLAAKNKPITTRQWKREY 525
Q PDR +L+ + P RQ E+
Sbjct: 331 QIRPDRQVLMWSATWPKEVRQLAEEF 356
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 372 (136.0 bits), Expect = 7.8e-67, Sum P(2) = 7.8e-67
Identities = 73/106 (68%), Positives = 82/106 (77%)
Query: 129 GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVAT 188
GDGPI LVLAPTRELAQQ+Q V + + R R++ C+YGG K Q RDL RG EI +AT
Sbjct: 86 GDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIAT 145
Query: 189 PGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 234
PGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 146 PGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 191
Score = 353 (129.3 bits), Expect = 7.8e-67, Sum P(2) = 7.8e-67
Identities = 66/107 (61%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AMGIHGDKSQ RD L +F+ G +LIA+DVASRGLDVED+K+V+NYD+P+++E+Y+H
Sbjct: 289 AMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIH 348
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARSTKTG +YT FTP N + DLI +L EA+Q + +LL L
Sbjct: 349 RIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL 395
Score = 233 (87.1 bits), Expect = 3.8e-51, Sum P(2) = 3.8e-51
Identities = 46/59 (77%), Positives = 49/59 (83%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 133 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 191
Score = 162 (62.1 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 149 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 191
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 359 (131.4 bits), Expect = 1.3e-66, Sum P(3) = 1.3e-66
Identities = 73/123 (59%), Positives = 86/123 (69%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+ILPA HIL P L+ GDGPI LVLAPTRELA+QI+ FS +IR+ C YGG K
Sbjct: 167 FILPAFVHILAQPNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPK 226
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q L +G I++A PGRLID LE TN+ R+TYLVLDEAD+MLDMGFE QIRKI+
Sbjct: 227 SGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVD 286
Query: 232 MTR 234
R
Sbjct: 287 QIR 289
Score = 269 (99.8 bits), Expect = 1.3e-66, Sum P(3) = 1.3e-66
Identities = 52/104 (50%), Positives = 73/104 (70%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHGDK Q R L +F++G ++IA+DVASRGLD++++KYV+N+DFP+ E+YVH
Sbjct: 387 ALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVH 446
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
RIGRT R+ G S+T T A+DL+ IL E+ Q VP +L
Sbjct: 447 RIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRESEQPVPPQL 490
Score = 189 (71.6 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
Identities = 37/57 (64%), Positives = 44/57 (77%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
L +G I++A PGRLID LE TN+ R+TYLVLDEAD+MLDMGFE QIRKI+ R
Sbjct: 233 LKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR 289
Score = 141 (54.7 bits), Expect = 1.8e-40, Sum P(3) = 1.8e-40
Identities = 27/43 (62%), Positives = 33/43 (76%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ LE TN+ R+TYLVLDEAD+MLDMGFE QIRKI+ R
Sbjct: 247 LIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR 289
Score = 130 (50.8 bits), Expect = 1.3e-66, Sum P(3) = 1.3e-66
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 24 INVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
IN + D + L KN+ PT IQ Q WPI LSG+D+IG A+TGSGKTL+ +
Sbjct: 115 INKIGFPDYVIKSL-KNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFIL 169
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 359 (131.4 bits), Expect = 1.3e-66, Sum P(3) = 1.3e-66
Identities = 73/123 (59%), Positives = 86/123 (69%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+ILPA HIL P L+ GDGPI LVLAPTRELA+QI+ FS +IR+ C YGG K
Sbjct: 167 FILPAFVHILAQPNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPK 226
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q L +G I++A PGRLID LE TN+ R+TYLVLDEAD+MLDMGFE QIRKI+
Sbjct: 227 SGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVD 286
Query: 232 MTR 234
R
Sbjct: 287 QIR 289
Score = 269 (99.8 bits), Expect = 1.3e-66, Sum P(3) = 1.3e-66
Identities = 52/104 (50%), Positives = 73/104 (70%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHGDK Q R L +F++G ++IA+DVASRGLD++++KYV+N+DFP+ E+YVH
Sbjct: 387 ALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVH 446
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
RIGRT R+ G S+T T A+DL+ IL E+ Q VP +L
Sbjct: 447 RIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRESEQPVPPQL 490
Score = 189 (71.6 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
Identities = 37/57 (64%), Positives = 44/57 (77%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
L +G I++A PGRLID LE TN+ R+TYLVLDEAD+MLDMGFE QIRKI+ R
Sbjct: 233 LKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR 289
Score = 141 (54.7 bits), Expect = 1.8e-40, Sum P(3) = 1.8e-40
Identities = 27/43 (62%), Positives = 33/43 (76%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ LE TN+ R+TYLVLDEAD+MLDMGFE QIRKI+ R
Sbjct: 247 LIDLLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIR 289
Score = 130 (50.8 bits), Expect = 1.3e-66, Sum P(3) = 1.3e-66
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 24 INVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
IN + D + L KN+ PT IQ Q WPI LSG+D+IG A+TGSGKTL+ +
Sbjct: 115 INKIGFPDYVIKSL-KNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFIL 169
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 338 (124.0 bits), Expect = 3.3e-65, Sum P(3) = 3.3e-65
Identities = 92/208 (44%), Positives = 125/208 (60%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y++P H+ ++ + + GP LVL+PTRELA QIQ F R+ RI CLYGG K
Sbjct: 212 YLIPGFLHLQRI-RNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPK 270
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RGA+IVVATPGRL D LE ++ +I+YLVLDEADRMLDMGFEPQIRKI++
Sbjct: 271 GPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
Query: 232 MTRTRDLCRGAEIVVAT-P-G-RLI--DFLES-GTTNVNRITYLVLDEA-DRMLDM--GF 282
T+ R + AT P G R I D L + N+ + LV +++ + +++
Sbjct: 331 EIPTK---RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPM 387
Query: 283 EPQIRKIIQMTRHAHPVVPVSLFISERR 310
E Q R++ Q+ R P V +F S +R
Sbjct: 388 EKQ-RRLEQILRSQEPGSKVIIFCSTKR 414
Score = 294 (108.6 bits), Expect = 3.3e-65, Sum P(3) = 3.3e-65
Identities = 60/112 (53%), Positives = 77/112 (68%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ A IHGDKSQ RD L FRSG VL+A+DVA+RGLDV+DI+ VVNYDFP+ E+Y
Sbjct: 427 FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDY 486
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAK 512
VHRIGRT R+ TG ++T F + A DLI IL A+Q VP ++ +A +
Sbjct: 487 VHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATR 538
Score = 135 (52.6 bits), Expect = 3.3e-65, Sum P(3) = 3.3e-65
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
++G+ PT IQAQSWPI + GRD++ IA+TGSGKTL I
Sbjct: 175 SAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLI 214
Score = 128 (50.1 bits), Expect = 4.0e-42, Sum P(3) = 4.0e-42
Identities = 25/36 (69%), Positives = 31/36 (86%)
Query: 317 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
LE ++ +I+YLVLDEADRMLDMGFEPQIRKI++
Sbjct: 295 LEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVK 330
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 316 (116.3 bits), Expect = 9.5e-62, Sum P(3) = 9.5e-62
Identities = 80/207 (38%), Positives = 117/207 (56%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y++P H+ ++ + GP LVL+PTRELA QIQ F ++ +I ACLYGG K
Sbjct: 283 YLIPGFMHLQRIHN-DSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPK 341
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q +++ RG +IVVATPGRL D LE ++++++YLVLDEADRMLDMGFEPQIRKI+
Sbjct: 342 GPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVN 401
Query: 232 MTRTRDLCRGAEIVVAT-PGRL----IDFLES-GTTNVNRITYLVLDEADRMLDMGFEPQ 285
T+ R + AT P + D L + N+ + LV +++ P
Sbjct: 402 EVPTK---RQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPM 458
Query: 286 IR--KIIQMTRHAHPVVPVSLFISERR 310
+ ++ Q+ R P + +F S +R
Sbjct: 459 EKHSRLEQILRSQEPGSKIIIFCSTKR 485
Score = 304 (112.1 bits), Expect = 9.5e-62, Sum P(3) = 9.5e-62
Identities = 61/112 (54%), Positives = 78/112 (69%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ A IHGDKSQ RD L FRSG VL+A+DVA+RGLDV+DI+ VVNYDFP+ E+Y
Sbjct: 498 FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDY 557
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAK 512
VHRIGRT R+ TG++YT F + A DLI IL A+Q VP ++ +A +
Sbjct: 558 VHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMATR 609
Score = 127 (49.8 bits), Expect = 9.2e-42, Sum P(3) = 9.2e-42
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 317 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
LE ++++++YLVLDEADRMLDMGFEPQIRKI+
Sbjct: 366 LEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIV 400
Score = 125 (49.1 bits), Expect = 9.5e-62, Sum P(3) = 9.5e-62
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
++G+ P+ IQAQSWPI + RD++ IA+TGSGKTL I
Sbjct: 246 SAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLI 285
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 337 (123.7 bits), Expect = 3.7e-61, Sum P(3) = 3.7e-61
Identities = 65/107 (60%), Positives = 85/107 (79%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
AM IHGDKSQ RD L +FRSG +LIA+DVASRGLDVED+K+V+NYD+P+++E+YVH
Sbjct: 365 AMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVH 424
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRTARST G +YT FTP N +A++LI +L EA+Q + +L+ L
Sbjct: 425 RIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 471
Score = 272 (100.8 bits), Expect = 3.7e-61, Sum P(3) = 3.7e-61
Identities = 62/123 (50%), Positives = 73/123 (59%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPA+ HI P LE GDGPI VL L + + + C G + K
Sbjct: 146 YLLPAIVHINHQPYLERGDGPIVSVLPFFSTLFSVYRGGTDFKFKCSSLFWVCFLGQSLK 205
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
+ L + EI +ATPGR IDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 206 GQRLEWLSQCVEICIATPGR-IDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVD 264
Query: 232 MTR 234
R
Sbjct: 265 QIR 267
Score = 208 (78.3 bits), Expect = 1.8e-54, Sum P(3) = 1.8e-54
Identities = 55/119 (46%), Positives = 69/119 (57%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAH 297
L + EI +ATPGR IDFLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 212 LSQCVEICIATPGR-IDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 270
Query: 298 PVVPVSL-FISERRDTILHFLESGTT-NVNRITYLVLDEADRMLDMGFEPQI-RKIIQM 353
+ S + E R FL T NV + +++D+ E + K+IQ+
Sbjct: 271 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 329
Score = 165 (63.1 bits), Expect = 5.7e-50, Sum P(3) = 5.7e-50
Identities = 32/42 (76%), Positives = 35/42 (83%)
Query: 314 LHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
+ FLESG TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 226 IDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR 267
Score = 122 (48.0 bits), Expect = 3.7e-61, Sum P(3) = 3.7e-61
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +PT IQ Q +P+ LSGRD++GIAQTGSGKTL+
Sbjct: 112 FTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLA 145
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 313 (115.2 bits), Expect = 3.9e-59, Sum P(3) = 3.9e-59
Identities = 88/208 (42%), Positives = 119/208 (57%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y++PA + +L+ + + +GP L+LAPTRELA QIQ F R+ RI CLYGG K
Sbjct: 489 YLIPA-FILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPK 547
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q ++L RGA+IVVATPGRL D LE + +++ LVLDEADRMLDMGFEPQIRKI+
Sbjct: 548 GPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVN 607
Query: 232 MTRTRDLCRGAEIVVAT-PG--RLI--DFLESGT-TNVNRITYLVLDEADRMLDMGFEPQ 285
R R + AT P R I D L + N+ R+ L ++A + PQ
Sbjct: 608 EIPPR---RQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQY-VEVVPQ 663
Query: 286 I---RKIIQMTRHAHPVVPVSLFISERR 310
+ R++ Q+ R V +F S +R
Sbjct: 664 MEKERRLEQILRSQERGSKVIIFCSTKR 691
Score = 291 (107.5 bits), Expect = 3.9e-59, Sum P(3) = 3.9e-59
Identities = 58/112 (51%), Positives = 79/112 (70%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ A+ IHGDK+Q RD L FRSG VLIA+DVA+RGLD++DI+ V+NYDFP E+Y
Sbjct: 704 FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDY 763
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAK 512
VHRIGRT R+ TG+++T FT + A DLI +L A+Q VP ++ +A +
Sbjct: 764 VHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMR 815
Score = 127 (49.8 bits), Expect = 3.9e-59, Sum P(3) = 3.9e-59
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
++G+ PT IQAQ+WPI L RD++ IA+TGSGKTL I
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLI 491
Score = 116 (45.9 bits), Expect = 3.2e-38, Sum P(3) = 3.2e-38
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 317 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
LE + +++ LVLDEADRMLDMGFEPQIRKI+
Sbjct: 572 LEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIV 606
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 478 (173.3 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 122/286 (42%), Positives = 169/286 (59%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RDL RG E+ +ATPGRLID LE+G TN+ R+TYLVLDEADRMLDMGFEPQIRKII R
Sbjct: 258 RDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRP 317
Query: 296 AHPVVPVSL-FISERRDTILHFLES------GTTNVN---RITYLV-----LDEADRMLD 340
S + E R FL + G+ +++ RIT +V ++ DRM+
Sbjct: 318 DRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIK 377
Query: 341 MGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSL 400
+ KI++ R N C ++ G +R + EI T+ +
Sbjct: 378 -----HLEKIME-NRGNKC-----------LVFTGTKR-IADEI------TRF--LRQDG 411
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ A+ IHGDK Q RD L +F++G +++A+DVASRG+DV DI +V+NYD+P+N+E+Y
Sbjct: 412 WPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDY 471
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
VHRIGRT R+ G + T FT N +A+DL+ IL+EA Q + RL
Sbjct: 472 VHRIGRTGRAGAKGTAITFFTTDNAKQARDLVTILSEAKQQIDPRL 517
Score = 424 (154.3 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 85/131 (64%), Positives = 97/131 (74%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y LPA+ HI P L GDGPI L+LAPTRELA QIQA IS F ++ RIR+ C+YGG
Sbjct: 192 LSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGV 251
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL RG E+ +ATPGRLID LE+G TN+ R+TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 252 PKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKI 311
Query: 230 IQMTRT-RDLC 239
I R R C
Sbjct: 312 ISQIRPDRQTC 322
Score = 146 (56.5 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
K G+ KPT+IQ+Q WP+ LSGRD++GIA+TGSGKTLS
Sbjct: 156 KAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLS 193
Score = 39 (18.8 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSG 60
+A G GK Y P + + P+ G
Sbjct: 183 IAETGSGKTLSYCLPAIVHINAQPLLAPG 211
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 481 (174.4 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 113/282 (40%), Positives = 159/282 (56%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ RDL +G EIV+ATPGRLID +ES TN+ R+TYLVLDEADRMLDMGF+PQIRKI+
Sbjct: 215 QVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVS-- 272
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
H P + + + + N ++ ++ +D + + I +
Sbjct: 273 -HIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKV---IIGSSDLKANRAIRQIVDVISES 328
Query: 354 TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQW 413
++N V L ++ G VF++ G + + + A+ IHGDKSQ
Sbjct: 329 QKYNKLVKL------LEDIMDGSRILVFLDTK-KGCDQITRQLRMDGWPALSIHGDKSQA 381
Query: 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT 473
RD L +FRSG ++ A+DVA+RGLDV+D+KYV+NYDFP + E+YVHRIGRT R+
Sbjct: 382 ERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAK 441
Query: 474 GISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKP 515
G +YT FT N A++L +IL EA Q V L + P
Sbjct: 442 GTAYTFFTVANARFAKELTNILQEAGQKVSPELASMGRSTAP 483
Score = 397 (144.8 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
Identities = 77/125 (61%), Positives = 92/125 (73%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y+LPA+ H+ P L GDGPI LVLAPTRELA QIQ S F + +I+ C+YGG
Sbjct: 151 LSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGV 210
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q RDL +G EIV+ATPGRLID +ES TN+ R+TYLVLDEADRMLDMGF+PQIRKI
Sbjct: 211 PKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKI 270
Query: 230 IQMTR 234
+ R
Sbjct: 271 VSHIR 275
Score = 141 (54.7 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 25/38 (65%), Positives = 32/38 (84%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
K +G+ +PT IQ+Q WP+ + GRDLIGIA+TGSGKTLS
Sbjct: 115 KKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS 152
Score = 38 (18.4 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSG 60
+A G GK Y P + + P+ G
Sbjct: 142 IAETGSGKTLSYLLPAIVHVNAQPMLAHG 170
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 290 (107.1 bits), Expect = 2.7e-58, Sum P(3) = 2.7e-58
Identities = 55/123 (44%), Positives = 84/123 (68%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+HG++ Q +R++ L+ F++G + +LIA+D+ASRGLDV D+ +V NYDFP N E YVHR+G
Sbjct: 516 LHGNREQSDRERALKSFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVG 575
Query: 466 RTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPITTRQWKREY 525
RT R+ +TG+S TL T + A +LI+IL A+Q VP+ L+ +A + K ++
Sbjct: 576 RTGRAGRTGVSITLITRNDWKIAGELINILERANQSVPEDLVSMAERYKANKLKKETENK 635
Query: 526 WRR 528
W R
Sbjct: 636 WGR 638
Score = 287 (106.1 bits), Expect = 2.7e-58, Sum P(3) = 2.7e-58
Identities = 60/122 (49%), Positives = 80/122 (65%)
Query: 110 VKYILPALYHILKMPKLEEG-DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 168
+ Y++P HI P L+ +GP LVL PTRELA Q+ A S +S ++ C+YGG
Sbjct: 293 LSYLMPGFIHIDSQPVLQRARNGPGMLVLTPTRELALQVDAECSEYSYR-GLKSVCIYGG 351
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
+ Q +DL +GA+I++ATPGRL D + + ITYLVLDEAD+MLDMGFEPQI K
Sbjct: 352 GDRDGQIKDLSKGADIIIATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMK 411
Query: 229 II 230
I+
Sbjct: 412 IL 413
Score = 177 (67.4 bits), Expect = 8.5e-47, Sum P(3) = 8.5e-47
Identities = 37/68 (54%), Positives = 46/68 (67%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
+DL +GA+I++ATPGRL D + + ITYLVLDEAD+MLDMGFEPQI KI+ R
Sbjct: 359 KDLSKGADIIIATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRP 418
Query: 296 AHPVVPVS 303
V S
Sbjct: 419 DRQTVMTS 426
Score = 137 (53.3 bits), Expect = 2.7e-58, Sum P(3) = 2.7e-58
Identities = 25/38 (65%), Positives = 32/38 (84%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +G+ KPT IQ+Q+WPI L G DLIG+AQTG+GKTLS
Sbjct: 257 EKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLS 294
Score = 117 (46.2 bits), Expect = 1.5e-40, Sum P(3) = 1.5e-40
Identities = 25/39 (64%), Positives = 29/39 (74%)
Query: 314 LHFLESGT-TNVNRITYLVLDEADRMLDMGFEPQIRKII 351
LH L+ + ITYLVLDEAD+MLDMGFEPQI KI+
Sbjct: 375 LHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKIL 413
Score = 48 (22.0 bits), Expect = 1.6e-37, Sum P(3) = 1.6e-37
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIE 80
VA G GK Y P I S P+ R+ G+ + L+L ++
Sbjct: 284 VAQTGTGKTLSYLMPGFIHIDSQPVLQRARNGPGMLVLTPTRELALQVD 332
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 477 (173.0 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 116/277 (41%), Positives = 163/277 (58%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RDL RG E+ +ATPGRLID LESG TN+ R+TYLVLDEADRMLDMGFEPQIRKII R
Sbjct: 243 RDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRP 302
Query: 296 AHPVVPVSL-FISERRDTILHFLESGT-TNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
+ S + E R+ FL+ N+ + +++++ E + R +M
Sbjct: 303 DRQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRD--RM 360
Query: 354 TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQW 413
R V G ++ G +R V EI T+ + + A+ IHGDK Q
Sbjct: 361 IRHMEKVMDGKDSKNKILIFVGTKR-VADEI------TRF--LRQDGWPALSIHGDKQQN 411
Query: 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT 473
RD L F++G +++A+DVASRG+DV +I +V+NYD+P+N+E+Y+HRIGRT R+
Sbjct: 412 ERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAK 471
Query: 474 GISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLA 510
G + T FT N +A+DL+ +L EA Q + RL +A
Sbjct: 472 GTAITFFTTENSKQARDLLGVLQEAKQEIDPRLAEMA 508
Score = 425 (154.7 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 102/218 (46%), Positives = 128/218 (58%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y LPA+ HI P L GDGPI L+LAPTRELA QIQA IS F ++ RIR+ C+YGG K
Sbjct: 179 YCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPK 238
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG E+ +ATPGRLID LESG TN+ R+TYLVLDEADRMLDMGFEPQIRKII
Sbjct: 239 GPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIG 298
Query: 232 MTRT--RDLCRGAEIVVATPGRLIDFLESGT-TNVNRITYLVLDEADRMLDMGFEPQIRK 288
R + L A DFL+ N+ + +++++ E + R
Sbjct: 299 QIRPDRQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRD 358
Query: 289 IIQMTRHAHPVVP-------VSLFISERR--DTILHFL 317
+M RH V+ + +F+ +R D I FL
Sbjct: 359 --RMIRHMEKVMDGKDSKNKILIFVGTKRVADEITRFL 394
Score = 137 (53.3 bits), Expect = 4.8e-58, Sum P(2) = 4.8e-58
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
K G+ PT+IQ+Q WP+ LSGRD++GIA+TGSGKTL+
Sbjct: 141 KAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLT 178
Score = 37 (18.1 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSG 60
+A G GK Y P + + P+ G
Sbjct: 168 IAETGSGKTLTYCLPAIVHINAQPLLAPG 196
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 475 (172.3 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
Identities = 117/276 (42%), Positives = 158/276 (57%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RDL RG EIV+ATPGRLID LE TN+ R+TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 283 RDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 342
Query: 296 AHPVVPVSLFISERRDTILH-FLESGTTNVNRITY-LVLDEADRMLDMGFEPQIRKIIQM 353
+ S +T+ FL R Y ++ D + I +
Sbjct: 343 DRQTLLWSATWPREVETLARQFL--------RDPYKAIIGSTDLKANQSINQVIEIVPTP 394
Query: 354 TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQW 413
++N +L L+ G + +F+E G + + + A+ IHGDK+Q
Sbjct: 395 EKYNR------LLTLLKQLMDGSKILIFVETKR-GCDQVTRQLRMDGWPALAIHGDKTQS 447
Query: 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT 473
RD+ L +F+SG ++ A+DVA+RGLDV+DIK VVNYDFP+ E+Y+HRIGRT R+
Sbjct: 448 ERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAK 507
Query: 474 GISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL 509
G+++T FT N A++L+ IL EA Q VP L L
Sbjct: 508 GMAFTFFTHDNAKFARELVKILQEAGQVVPPTLSAL 543
Score = 385 (140.6 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 77/123 (62%), Positives = 88/123 (71%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPAL H+ P+L + DGPI L+LAPTRELA QIQ F +R C+YGG K
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPK 278
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q RDL RG EIV+ATPGRLID LE TN+ R+TYLVLDEADRMLDMGFEPQIRKI+
Sbjct: 279 GPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVS 338
Query: 232 MTR 234
R
Sbjct: 339 QIR 341
Score = 137 (53.3 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
G+ +PT IQAQ WP+ L GRDLIGIA+TGSGKTL+
Sbjct: 184 GFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Score = 37 (18.1 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 38 GKNSGYGKPTSIQAQS 53
G NSGY + S Q S
Sbjct: 54 GDNSGYNRYPSFQPPS 69
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 292 (107.8 bits), Expect = 1.8e-57, Sum P(3) = 1.8e-57
Identities = 57/123 (46%), Positives = 85/123 (69%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+HGD+ Q +R++ L +F++G + +LIA+D+ASRGLDV D+ +V N+DFP N E YVHRIG
Sbjct: 517 LHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIG 576
Query: 466 RTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPITTRQWKREY 525
RT R+ +TG+S T T + A +LI+IL A+Q +P+ L+ +A + K Q KRE
Sbjct: 577 RTGRAGRTGVSITTLTRNDWRVASELINILERANQSIPEELVSMAERFK---AHQQKREM 633
Query: 526 WRR 528
R+
Sbjct: 634 ERK 636
Score = 277 (102.6 bits), Expect = 1.8e-57, Sum P(3) = 1.8e-57
Identities = 57/120 (47%), Positives = 79/120 (65%)
Query: 112 YILPALYHILKMPKLE-EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTS 170
Y++P H++ P L+ + + P LVL PTRELA Q++ +S +R C+YGG +
Sbjct: 296 YLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYK-GLRSVCVYGGGN 354
Query: 171 KMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
+ Q +L +G +I++ATPGRL D S N+ ITYLVLDEAD+MLDMGFEPQI KI+
Sbjct: 355 RDEQIEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKIL 414
Score = 177 (67.4 bits), Expect = 5.0e-47, Sum P(3) = 5.0e-47
Identities = 37/67 (55%), Positives = 45/67 (67%)
Query: 237 DLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHA 296
+L +G +I++ATPGRL D S N+ ITYLVLDEAD+MLDMGFEPQI KI+ R
Sbjct: 361 ELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPD 420
Query: 297 HPVVPVS 303
V S
Sbjct: 421 RQTVMTS 427
Score = 137 (53.3 bits), Expect = 1.8e-57, Sum P(3) = 1.8e-57
Identities = 25/37 (67%), Positives = 31/37 (83%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTL 75
K +G+ KPT IQ+Q+WPI L G DLIG+AQTG+GKTL
Sbjct: 258 KKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTL 294
Score = 123 (48.4 bits), Expect = 2.1e-41, Sum P(3) = 2.1e-41
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 319 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
S N+ ITYLVLDEAD+MLDMGFEPQI KI+
Sbjct: 382 SNFVNLKNITYLVLDEADKMLDMGFEPQIMKIL 414
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 468 (169.8 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 120/284 (42%), Positives = 169/284 (59%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RDL RG EI +ATPGRL+D L+S TN+ R+TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 240 RDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRP 299
Query: 296 AHPVVPVSLFISER-----RDTILHFLE--------SGTTNVNRITYLVLDEADRMLDMG 342
V S + RD + +++ + + N+ +I +V D AD+ +G
Sbjct: 300 DRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVV-DNADKRARLG 358
Query: 343 FEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYR 402
+ I ++++ R N VL F G +R V +I T+ + +
Sbjct: 359 KD--IEEVLK-DRDNK------VLIF-----TGTKR-VADDI------TRF--LRQDGWP 395
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHGDK+Q RD L +FR+G +++A+DVASRG+DV+ I +V NYDFP NTE+YVH
Sbjct: 396 ALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVH 455
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
RIGRT R+ G +YT FT N +A++L+ IL+EA Q + +L
Sbjct: 456 RIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKL 499
Score = 399 (145.5 bits), Expect = 4.2e-49, Sum P(2) = 4.2e-49
Identities = 78/125 (62%), Positives = 92/125 (73%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ Y LPA+ HI P L GDGPI LVLAPTRELA QIQ + F ++ RIR+ C+YGG
Sbjct: 174 LSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGV 233
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
+ Q RDL RG EI +ATPGRL+D L+S TN+ R+TYLVLDEADRMLDMGFEPQIRKI
Sbjct: 234 PRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKI 293
Query: 230 IQMTR 234
+ R
Sbjct: 294 VDQIR 298
Score = 130 (50.8 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 23/38 (60%), Positives = 30/38 (78%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
K G+ PT IQ Q+WP+ +SGRD++GI+ TGSGKTLS
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLS 175
Score = 40 (19.1 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 7 VRLVSLEARLPYFRSGYINVLIASD---VASRGLGKNSGYGKPTSIQAQSWPICLSG 60
V+ + EA P + + + D +++ G GK Y P + + P+ G
Sbjct: 137 VKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPG 193
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 282 (104.3 bits), Expect = 3.0e-56, Sum P(3) = 3.0e-56
Identities = 56/109 (51%), Positives = 75/109 (68%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+HGD+ Q +RDQ L DFR+G + +LIA+D+A+RGLDV D+ +V NY+FP N E YVHR+G
Sbjct: 476 LHGDREQSDRDQALEDFRTGRVKILIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVG 535
Query: 466 RTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNK 514
RT R+ K G S TL T + A +LI IL A+Q VP L +A + K
Sbjct: 536 RTGRAGKIGESITLVTQDDWKIADELIKILQRANQIVPPSLRSMADRFK 584
Score = 270 (100.1 bits), Expect = 3.0e-56, Sum P(3) = 3.0e-56
Identities = 55/122 (45%), Positives = 80/122 (65%)
Query: 110 VKYILPALYHILKMP-KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 168
+ Y++P HI P ++ +GP LVL PTRELA Q++A S + ++ C+YGG
Sbjct: 253 LSYLMPGFIHIHSQPVSRKQRNGPGMLVLTPTRELALQVEAECSKYLYK-GLKSVCIYGG 311
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
++ Q +D+ +G +I++ATPGRL D + N+ ITYLVLDEAD+MLD+GFE QI K
Sbjct: 312 GNRKGQIQDVTKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMK 371
Query: 229 II 230
I+
Sbjct: 372 IL 373
Score = 164 (62.8 bits), Expect = 3.5e-45, Sum P(3) = 3.5e-45
Identities = 31/55 (56%), Positives = 42/55 (76%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
+D+ +G +I++ATPGRL D + N+ ITYLVLDEAD+MLD+GFE QI KI+
Sbjct: 319 QDVTKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL 373
Score = 142 (55.0 bits), Expect = 3.0e-56, Sum P(3) = 3.0e-56
Identities = 27/38 (71%), Positives = 32/38 (84%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +G+ KPT IQ+QSWPI L G DLIGIAQTG+GKTLS
Sbjct: 217 RRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLS 254
Score = 108 (43.1 bits), Expect = 2.4e-39, Sum P(3) = 2.4e-39
Identities = 21/29 (72%), Positives = 25/29 (86%)
Query: 323 NVNRITYLVLDEADRMLDMGFEPQIRKII 351
N+ ITYLVLDEAD+MLD+GFE QI KI+
Sbjct: 345 NLRSITYLVLDEADKMLDLGFEHQIMKIL 373
Score = 37 (18.1 bits), Expect = 1.7e-30, Sum P(3) = 1.7e-30
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 503 PDRLLLLAAKNKPITTRQWKREYWRR 528
PDR ++ + P +TR+ + Y ++
Sbjct: 378 PDRQTVMTTASWPDSTRRLAQSYLKQ 403
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 316 (116.3 bits), Expect = 8.6e-56, Sum P(3) = 8.6e-56
Identities = 62/123 (50%), Positives = 83/123 (67%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LP + HI+ P+L+ +GPI ++ APTRELA QI FS+ +R + +YGG SK
Sbjct: 282 FVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSK 341
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q ++L G EIVVATPGRLID L+ + R +YLVLDEADRM D+GFEPQ+R I+
Sbjct: 342 HEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVG 401
Query: 232 MTR 234
R
Sbjct: 402 QIR 404
Score = 245 (91.3 bits), Expect = 8.6e-56, Sum P(3) = 8.6e-56
Identities = 52/114 (45%), Positives = 76/114 (66%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
++ +HGDK Q +R +TL+ F+SG +VLIA+DVA+RGLD++ +K VVNYD + + +
Sbjct: 498 FKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMH 557
Query: 461 VHRIGRTARS-TKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
VHRIGRT R+ + G++YTL T A +L++ L A Q VP L LA K+
Sbjct: 558 VHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDLAMKD 611
Score = 177 (67.4 bits), Expect = 3.8e-40, Sum P(3) = 3.8e-40
Identities = 35/59 (59%), Positives = 43/59 (72%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
++L G EIVVATPGRLID L+ + R +YLVLDEADRM D+GFEPQ+R I+ R
Sbjct: 346 KELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIR 404
Score = 129 (50.5 bits), Expect = 8.6e-56, Sum P(3) = 8.6e-56
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K Y KPT+IQ Q+ PI LSGRD+IGIA+TGSGKT + +
Sbjct: 244 KKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVL 284
Score = 112 (44.5 bits), Expect = 2.2e-33, Sum P(3) = 2.2e-33
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ L+ + R +YLVLDEADRM D+GFEPQ+R I+ R
Sbjct: 362 LIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIR 404
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 301 (111.0 bits), Expect = 1.3e-55, Sum P(3) = 1.3e-55
Identities = 61/128 (47%), Positives = 86/128 (67%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+HGD+ Q +R+Q L DF+ G + +L+A+D+ASRGLDV DI +V N+DFP N E YVHR+G
Sbjct: 514 LHGDREQCDREQALDDFKKGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVG 573
Query: 466 RTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPITTR-QWKRE 524
RT R+ +TG + TL T + A +LIDIL A Q VPD L+ +A + K R + +++
Sbjct: 574 RTGRAGRTGKAVTLITKKDWKAASELIDILQRAKQVVPDELISMAERYKQHQIRKEMEKD 633
Query: 525 YWR--RKS 530
R RKS
Sbjct: 634 ILRPQRKS 641
Score = 249 (92.7 bits), Expect = 1.3e-55, Sum P(3) = 1.3e-55
Identities = 57/122 (46%), Positives = 76/122 (62%)
Query: 112 YILPALYHILK--MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR-IRHACLYGG 168
Y++P H+ +PK + G GP LVLAPTRELA Q++A T + + C+YGG
Sbjct: 294 YLMPGFIHLASQPIPKDKRG-GPGMLVLAPTRELALQVEA--ECLKYTYKGFKSICIYGG 350
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
+ Q + +G +IV+ATPGRL D + N+ ITYL +EADRMLDMGFEPQI K
Sbjct: 351 GDRKAQINVVTKGVDIVIATPGRLNDLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMK 409
Query: 229 II 230
I+
Sbjct: 410 IL 411
Score = 151 (58.2 bits), Expect = 2.2e-45, Sum P(3) = 2.2e-45
Identities = 34/64 (53%), Positives = 42/64 (65%)
Query: 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPV 299
+G +IV+ATPGRL D + N+ ITYL +EADRMLDMGFEPQI KI+ R
Sbjct: 362 KGVDIVIATPGRLNDLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMKILIDVRPDRQT 420
Query: 300 VPVS 303
V +S
Sbjct: 421 VMMS 424
Score = 136 (52.9 bits), Expect = 1.3e-55, Sum P(3) = 1.3e-55
Identities = 25/38 (65%), Positives = 32/38 (84%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +G+ KPT IQ+Q+WPI L G DLIGIAQTG+GKTL+
Sbjct: 256 RKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLA 293
Score = 101 (40.6 bits), Expect = 3.6e-40, Sum P(3) = 3.6e-40
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 323 NVNRITYLVLDEADRMLDMGFEPQIRKII 351
N+ ITYL +EADRMLDMGFEPQI KI+
Sbjct: 384 NLKSITYLA-NEADRMLDMGFEPQIMKIL 411
Score = 47 (21.6 bits), Expect = 4.1e-36, Sum P(3) = 4.1e-36
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIE 80
+A G GK Y P I S PI R G+ + L+L +E
Sbjct: 283 IAQTGTGKTLAYLMPGFIHLASQPIPKDKRGGPGMLVLAPTRELALQVE 331
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 323 (118.8 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
Identities = 64/123 (52%), Positives = 80/123 (65%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+I P L HI+ +LE GDGPIA+++ PTREL QQI + F + +R +YGG S
Sbjct: 302 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSM 361
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L GAEIVV TPGRLID ++ TN+ R+TYLV DEADRM DMGFE Q+R I
Sbjct: 362 WEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIAS 421
Query: 232 MTR 234
R
Sbjct: 422 HVR 424
Score = 242 (90.2 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
Identities = 48/108 (44%), Positives = 71/108 (65%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+HGD Q R++ + +F+ I +L+A+DVA+RGLD+ IK V+NYD + + + HRIG
Sbjct: 523 LHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 582
Query: 466 RTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
RT R+ + G++YTL TP + N A DL+ L A+Q V LL LA +N
Sbjct: 583 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQN 630
Score = 182 (69.1 bits), Expect = 3.0e-39, Sum P(3) = 3.0e-39
Identities = 41/80 (51%), Positives = 49/80 (61%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ + L GAEIVV TPGRLID ++ TN+ R+TYLV DEADRM DMGFE Q+R I
Sbjct: 364 QAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIAS-- 421
Query: 294 RHAHPVVPVSLFISERRDTI 313
H P LF + R I
Sbjct: 422 -HVRPDRQTLLFSATFRKKI 440
Score = 117 (46.2 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
Identities = 22/36 (61%), Positives = 28/36 (77%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
+ S Y +PT IQ Q P+ +SGRD+IGIA+TGSGKT
Sbjct: 264 RKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKT 299
Score = 117 (46.2 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ ++ TN+ R+TYLV DEADRM DMGFE Q+R I R
Sbjct: 382 LIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVR 424
Score = 51 (23.0 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 22/112 (19%), Positives = 51/112 (45%)
Query: 389 TETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV--LIASDVASRGLDVEDIK 446
+E K +G + +L R++ ++G S W + + L++ + + V + +++ +
Sbjct: 339 SECKRFGKAYNL-RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVT 397
Query: 447 YVVNYDFPDNTEN--YVHRIGRTARSTKTGISYTLFTPLNGNKAQDLI-DIL 495
Y+V +D D + + +++ A + LF+ K + L DIL
Sbjct: 398 YLV-FDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDIL 448
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 322 (118.4 bits), Expect = 3.6e-55, Sum P(3) = 3.6e-55
Identities = 64/123 (52%), Positives = 80/123 (65%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+I P L HI+ +LE GDGPIA+++ PTREL QQI A F + +R +YGG S
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 367 WEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 232 MTR 234
R
Sbjct: 427 HVR 429
Score = 247 (92.0 bits), Expect = 3.6e-55, Sum P(3) = 3.6e-55
Identities = 50/108 (46%), Positives = 71/108 (65%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+HGD Q R++ + DF+ I VL+A+DVA+RGLD+ IK V+NYD + + + HRIG
Sbjct: 528 LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 587
Query: 466 RTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
RT R+ + G++YTL TP + N A DL+ L A+Q V LL LA +N
Sbjct: 588 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQN 635
Score = 178 (67.7 bits), Expect = 5.2e-39, Sum P(3) = 5.2e-39
Identities = 40/80 (50%), Positives = 49/80 (61%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 369 QAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS-- 426
Query: 294 RHAHPVVPVSLFISERRDTI 313
H P LF + R I
Sbjct: 427 -HVRPDRQTLLFSATFRKKI 445
Score = 119 (46.9 bits), Expect = 3.6e-55, Sum P(3) = 3.6e-55
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
+ S Y +PT IQ Q P+ LSGRD+IGIA+TGSGKT
Sbjct: 269 RKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKT 304
Score = 113 (44.8 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ ++ TN+ R++YLV DEADRM DMGFE Q+R I R
Sbjct: 387 LIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Score = 51 (23.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 22/111 (19%), Positives = 50/111 (45%)
Query: 390 ETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV--LIASDVASRGLDVEDIKY 447
E K +G + +L R++ ++G S W + + L++ + + V + +++ + Y
Sbjct: 345 ECKRFGKAYNL-RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSY 403
Query: 448 VVNYDFPDNTEN--YVHRIGRTARSTKTGISYTLFTPLNGNKAQDLI-DIL 495
+V +D D + + +++ A + LF+ K + L DIL
Sbjct: 404 LV-FDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDIL 453
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 284 (105.0 bits), Expect = 3.9e-55, Sum P(3) = 3.9e-55
Identities = 53/107 (49%), Positives = 77/107 (71%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+HGD+ Q +R++ L+DF+ G + +L+A+D+ASRGLDV DI +V NYDFP N E YVHR+G
Sbjct: 553 LHGDREQCDREEALQDFKDGRVRILVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVG 612
Query: 466 RTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAK 512
RT R+ ++G S TL T + A +LI IL + Q VP+ L+L+A +
Sbjct: 613 RTGRAGRSGESVTLVTREDWRVAAELITILERSGQDVPEELVLMAER 659
Score = 271 (100.5 bits), Expect = 3.9e-55, Sum P(3) = 3.9e-55
Identities = 61/121 (50%), Positives = 79/121 (65%)
Query: 112 YILPALYHI--LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
Y+LP H+ MP+ ++ +GP LVL PTRELA QI+A + +S + C+YGG
Sbjct: 332 YLLPGFIHMDGQPMPR-DKRNGPGMLVLTPTRELALQIEAECNKYSYK-GFKSICIYGGG 389
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
+ Q + + G +IV+ATPGRL D + N+ ITYLVLDEADRMLDMGFEPQI KI
Sbjct: 390 DRNAQIKVVTSGVDIVIATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKI 449
Query: 230 I 230
I
Sbjct: 450 I 450
Score = 171 (65.3 bits), Expect = 1.1e-44, Sum P(3) = 1.1e-44
Identities = 35/50 (70%), Positives = 39/50 (78%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
G +IV+ATPGRL D + N+ ITYLVLDEADRMLDMGFEPQI KII
Sbjct: 401 GVDIVIATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKII 450
Score = 133 (51.9 bits), Expect = 3.9e-55, Sum P(3) = 3.9e-55
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
G+ KPT IQ+Q+WP+ L+G DLIGIAQTG+GKTL+
Sbjct: 297 GFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLA 331
Score = 125 (49.1 bits), Expect = 6.7e-40, Sum P(3) = 6.7e-40
Identities = 25/29 (86%), Positives = 26/29 (89%)
Query: 323 NVNRITYLVLDEADRMLDMGFEPQIRKII 351
N+ ITYLVLDEADRMLDMGFEPQI KII
Sbjct: 422 NLRSITYLVLDEADRMLDMGFEPQIMKII 450
Score = 43 (20.2 bits), Expect = 9.8e-46, Sum P(3) = 9.8e-46
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 65 GIAQTGSGKTLSLTIENTQVAR 86
G A G +++L +EN+ V R
Sbjct: 93 GYADRGDSSSVTLNVENSLVGR 114
Score = 41 (19.5 bits), Expect = 4.1e-35, Sum P(3) = 4.1e-35
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIE 80
+A G GK Y P I P+ R+ G+ + L+L IE
Sbjct: 321 IAQTGTGKTLAYLLPGFIHMDGQPMPRDKRNGPGMLVLTPTRELALQIE 369
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 322 (118.4 bits), Expect = 4.0e-55, Sum P(3) = 4.0e-55
Identities = 64/123 (52%), Positives = 80/123 (65%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+I P L HI+ +LE GDGPIA+++ PTREL QQI A F + +R +YGG S
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 367 WEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 232 MTR 234
R
Sbjct: 427 HVR 429
Score = 247 (92.0 bits), Expect = 4.0e-55, Sum P(3) = 4.0e-55
Identities = 50/108 (46%), Positives = 71/108 (65%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+HGD Q R++ + DF+ I VL+A+DVA+RGLD+ IK V+NYD + + + HRIG
Sbjct: 527 LHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 586
Query: 466 RTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
RT R+ + G++YTL TP + N A DL+ L A+Q V LL LA +N
Sbjct: 587 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQN 634
Score = 178 (67.7 bits), Expect = 5.7e-39, Sum P(3) = 5.7e-39
Identities = 40/80 (50%), Positives = 49/80 (61%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 369 QAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS-- 426
Query: 294 RHAHPVVPVSLFISERRDTI 313
H P LF + R I
Sbjct: 427 -HVRPDRQTLLFSATFRKKI 445
Score = 119 (46.9 bits), Expect = 4.0e-55, Sum P(3) = 4.0e-55
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
+ S Y +PT IQ Q P+ LSGRD+IGIA+TGSGKT
Sbjct: 269 RKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKT 304
Score = 113 (44.8 bits), Expect = 3.2e-32, Sum P(3) = 3.2e-32
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ ++ TN+ R++YLV DEADRM DMGFE Q+R I R
Sbjct: 387 LIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVR 429
Score = 51 (23.0 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 22/111 (19%), Positives = 50/111 (45%)
Query: 390 ETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV--LIASDVASRGLDVEDIKY 447
E K +G + +L R++ ++G S W + + L++ + + V + +++ + Y
Sbjct: 345 ECKRFGKAYNL-RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSY 403
Query: 448 VVNYDFPDNTEN--YVHRIGRTARSTKTGISYTLFTPLNGNKAQDLI-DIL 495
+V +D D + + +++ A + LF+ K + L DIL
Sbjct: 404 LV-FDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDIL 453
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 341 (125.1 bits), Expect = 7.5e-55, Sum P(3) = 7.5e-55
Identities = 66/128 (51%), Positives = 88/128 (68%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ ++LP HI+ LEEG+GPIA+++ PTRELA QI FS+T+ +R C+YGGT
Sbjct: 423 IAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGT 482
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGT---TNVNRITYLVLDEADRMLDMGFEPQI 226
Q +L RGAEI+V TPGR+ID L + TN+ R+TY+VLDEADRM DMGFEPQ+
Sbjct: 483 GISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQV 542
Query: 227 RKIIQMTR 234
+I+ R
Sbjct: 543 MRIVDNVR 550
Score = 215 (80.7 bits), Expect = 7.5e-55, Sum P(3) = 7.5e-55
Identities = 45/114 (39%), Positives = 66/114 (57%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y + +HG Q++RD + DF++G +L+A+ VA+RGLDV+ + VVNY P++ E+Y
Sbjct: 643 YPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDY 702
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNK 514
VHR GRT R+ G +YT T A D+I L + +P L L A K
Sbjct: 703 VHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKALELSGNPIPADLEKLWADFK 756
Score = 186 (70.5 bits), Expect = 8.1e-37, Sum P(3) = 8.1e-37
Identities = 36/61 (59%), Positives = 46/61 (75%)
Query: 237 DLCRGAEIVVATPGRLIDFLESGT---TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RGAEI+V TPGR+ID L + TN+ R+TY+VLDEADRM DMGFEPQ+ +I+
Sbjct: 490 ELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 549
Query: 294 R 294
R
Sbjct: 550 R 550
Score = 127 (49.8 bits), Expect = 7.5e-55, Sum P(3) = 7.5e-55
Identities = 24/41 (58%), Positives = 32/41 (78%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K GY KPT IQ+Q+ P ++GRDLIGIA+TGSGKT++ +
Sbjct: 387 KKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLL 427
Score = 126 (49.4 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 22/34 (64%), Positives = 28/34 (82%)
Query: 322 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
TN+ R+TY+VLDEADRM DMGFEPQ+ +I+ R
Sbjct: 517 TNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVR 550
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 323 (118.8 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
Identities = 64/123 (52%), Positives = 80/123 (65%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+I P L HI+ +LE GDGPIA+++ PTREL QQI + F + +R +YGG S
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSM 366
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L GAEIVV TPGRLID ++ TN+ R+TYLV DEADRM DMGFE Q+R I
Sbjct: 367 WEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 232 MTR 234
R
Sbjct: 427 HVR 429
Score = 242 (90.2 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
Identities = 48/108 (44%), Positives = 71/108 (65%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+HGD Q R++ + +F+ I +L+A+DVA+RGLD+ IK V+NYD + + + HRIG
Sbjct: 528 LHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 587
Query: 466 RTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
RT R+ + G++YTL TP + N A DL+ L A+Q V LL LA +N
Sbjct: 588 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQN 635
Score = 182 (69.1 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 41/80 (51%), Positives = 49/80 (61%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ + L GAEIVV TPGRLID ++ TN+ R+TYLV DEADRM DMGFE Q+R I
Sbjct: 369 QAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIAS-- 426
Query: 294 RHAHPVVPVSLFISERRDTI 313
H P LF + R I
Sbjct: 427 -HVRPDRQTLLFSATFRKKI 445
Score = 117 (46.2 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
Identities = 22/36 (61%), Positives = 28/36 (77%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
+ S Y +PT IQ Q P+ +SGRD+IGIA+TGSGKT
Sbjct: 269 RKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKT 304
Score = 117 (46.2 bits), Expect = 7.3e-32, Sum P(3) = 7.3e-32
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ ++ TN+ R+TYLV DEADRM DMGFE Q+R I R
Sbjct: 387 LIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVR 429
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 323 (118.8 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
Identities = 64/123 (52%), Positives = 80/123 (65%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+I P L HI+ +LE GDGPIA+++ PTREL QQI + F + +R +YGG S
Sbjct: 309 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSM 368
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L GAEIVV TPGRLID ++ TN+ R+TYLV DEADRM DMGFE Q+R I
Sbjct: 369 WEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIAS 428
Query: 232 MTR 234
R
Sbjct: 429 HVR 431
Score = 242 (90.2 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
Identities = 48/108 (44%), Positives = 71/108 (65%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+HGD Q R++ + +F+ I +L+A+DVA+RGLD+ IK V+NYD + + + HRIG
Sbjct: 530 LHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIG 589
Query: 466 RTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
RT R+ + G++YTL TP + N A DL+ L A+Q V LL LA +N
Sbjct: 590 RTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQN 637
Score = 182 (69.1 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 41/80 (51%), Positives = 49/80 (61%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ + L GAEIVV TPGRLID ++ TN+ R+TYLV DEADRM DMGFE Q+R I
Sbjct: 371 QAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIAS-- 428
Query: 294 RHAHPVVPVSLFISERRDTI 313
H P LF + R I
Sbjct: 429 -HVRPDRQTLLFSATFRKKI 447
Score = 117 (46.2 bits), Expect = 1.6e-54, Sum P(3) = 1.6e-54
Identities = 22/36 (61%), Positives = 28/36 (77%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
+ S Y +PT IQ Q P+ +SGRD+IGIA+TGSGKT
Sbjct: 271 RKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKT 306
Score = 117 (46.2 bits), Expect = 7.4e-32, Sum P(3) = 7.4e-32
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ ++ TN+ R+TYLV DEADRM DMGFE Q+R I R
Sbjct: 389 LIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIASHVR 431
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 442 (160.7 bits), Expect = 5.7e-53, Sum P(2) = 5.7e-53
Identities = 112/290 (38%), Positives = 166/290 (57%)
Query: 237 DLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHA 296
DL RGAEI++ TPGRL D + + +V+ ITYLVLDEADRMLDMGFEPQIRK++ R
Sbjct: 402 DLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPD 461
Query: 297 HPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ--MT 354
+ S + + +S N ++ LD A QI K+++ M
Sbjct: 462 RQTIMTS---ATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHS----VKQIIKLMEDDMD 514
Query: 355 RFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSL----YRAMGIHGDK 410
+FNT +V ++ ++ + G + + +SS L + IHG++
Sbjct: 515 KFNTIT--SFVKN-----MSSTDKIIIF----CGRKVRADDLSSELTLDGFMTQCIHGNR 563
Query: 411 SQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARS 470
Q +R+Q + D +SG + +L+A+DVASRGLD+EDI +V+NYDFP N E YVHR+GRT R+
Sbjct: 564 DQMDREQAIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRA 623
Query: 471 TKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPITTRQ 520
+ G S + FT + A++LI+IL EA Q VPD L +A + K + ++
Sbjct: 624 GRQGTSISFFTREDWAMAKELIEILQEAEQEVPDELHNMARRFKAMKDKR 673
Score = 283 (104.7 bits), Expect = 5.7e-31, Sum P(2) = 5.7e-31
Identities = 63/122 (51%), Positives = 82/122 (67%)
Query: 112 YILPALYHI--LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS-RTMRIRHACLYGG 168
++LP + H P+ G G LVLAPTRELA QI+ + +S R M+ C+YGG
Sbjct: 337 FLLPGMIHTEYQSTPRGTRG-GANVLVLAPTRELALQIEMEVKKYSFRGMKA--VCVYGG 393
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
++ Q DL RGAEI++ TPGRL D + + +V+ ITYLVLDEADRMLDMGFEPQIRK
Sbjct: 394 GNRNMQISDLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRK 453
Query: 229 II 230
++
Sbjct: 454 VM 455
Score = 133 (51.9 bits), Expect = 5.7e-53, Sum P(2) = 5.7e-53
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
G+ KP+ IQ+Q+WPI L G D+IGIAQTG+GKTL+ +
Sbjct: 302 GFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLL 339
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 426 (155.0 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 108/276 (39%), Positives = 151/276 (54%)
Query: 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPV 299
+G +IV+ATPGRL D + N+ ITYLVLDEADRMLDMGFEPQI KI+ R
Sbjct: 175 KGVDIVIATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQT 234
Query: 300 VPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTC 359
V +S + D + +S N I Y+ LD+ + K +Q F+
Sbjct: 235 VMMS---ATWPDGVRRLAKSYLRNP-MIVYV------GTLDLAVSGVVLKYLQ---FDKD 281
Query: 360 VFLGYVLYFWFILVAGIERWVFMEINHNGTE-TKHYGVSSSLYRAMGIHGDKSQWNRDQT 418
+F + VF++++ + GV +HGD+ Q +R+Q
Sbjct: 282 IFTWKYMQVNAQSFCTDVVVVFVQLHVVADDIASDLGVQG--VPVQSLHGDREQCDREQA 339
Query: 419 LRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYT 478
L DF+ G + +L+A+D+ASRGLDV DI +V N+DFP N E YVHR+GRT R+ +TG + T
Sbjct: 340 LDDFKKGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVT 399
Query: 479 LFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNK 514
L T + A +LIDIL A Q VPD L+ +A + K
Sbjct: 400 LITKKDWKAASELIDILQRAKQVVPDELISMAERYK 435
Score = 271 (100.5 bits), Expect = 4.3e-31, Sum P(2) = 4.3e-31
Identities = 60/122 (49%), Positives = 78/122 (63%)
Query: 112 YILPALYHILK--MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR-IRHACLYGG 168
Y++P H+ +PK + G GP LVLAPTRELA Q++A T + + C+YGG
Sbjct: 107 YLMPGFIHLASQPIPKDKRG-GPGMLVLAPTRELALQVEA--ECLKYTYKGFKSICIYGG 163
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
+ Q + +G +IV+ATPGRL D + N+ ITYLVLDEADRMLDMGFEPQI K
Sbjct: 164 GDRKAQINVVTKGVDIVIATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMK 223
Query: 229 II 230
I+
Sbjct: 224 IL 225
Score = 136 (52.9 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 25/38 (65%), Positives = 32/38 (84%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+ +G+ KPT IQ+Q+WPI L G DLIGIAQTG+GKTL+
Sbjct: 69 RKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLA 106
Score = 47 (21.6 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIE 80
+A G GK Y P I S PI R G+ + L+L +E
Sbjct: 96 IAQTGTGKTLAYLMPGFIHLASQPIPKDKRGGPGMLVLAPTRELALQVE 144
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 336 (123.3 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 71/126 (56%), Positives = 87/126 (69%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LP L HI P +E GDGPI LV+APTREL QQI + I FS+ + I +YGG+
Sbjct: 450 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGV 509
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFL--ESGT-TNVNRITYLVLDEADRMLDMGFEPQIRK 228
Q +L RG EIVV TPGR+ID L SG TN+ R+TYLV+DEADRM DMGFEPQI +
Sbjct: 510 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITR 569
Query: 229 IIQMTR 234
I+Q R
Sbjct: 570 IVQNIR 575
Score = 203 (76.5 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 39/97 (40%), Positives = 67/97 (69%)
Query: 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT 473
++++++ DF+S N+LIA+ VA+RGLDV++++ VVN+D P++ E+YVHR+GRT R+ +
Sbjct: 652 SQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRK 711
Query: 474 GISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLA 510
G + T + + A DL+ L + Q VPD + +A
Sbjct: 712 GCAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAVA 748
Score = 193 (73.0 bits), Expect = 9.6e-36, Sum P(3) = 9.6e-36
Identities = 43/80 (53%), Positives = 53/80 (66%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESGT-TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RG EIVV TPGR+ID L SG TN+ R+TYLV+DEADRM DMGFEPQI +I+Q
Sbjct: 515 ELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 574
Query: 294 RHAHPVVPVSLFISERRDTI 313
R V S + +T+
Sbjct: 575 RPDRQTVLFSATFPRQVETL 594
Score = 132 (51.5 bits), Expect = 2.0e-29, Sum P(3) = 2.0e-29
Identities = 24/34 (70%), Positives = 29/34 (85%)
Query: 322 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
TN+ R+TYLV+DEADRM DMGFEPQI +I+Q R
Sbjct: 542 TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 575
Score = 122 (48.0 bits), Expect = 1.6e-52, Sum P(3) = 1.6e-52
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K Y KP IQAQ+ PI +SGRD IG+A+TGSGKTL +
Sbjct: 412 KKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVL 452
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 320 (117.7 bits), Expect = 4.7e-52, Sum P(3) = 4.7e-52
Identities = 62/128 (48%), Positives = 87/128 (67%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ ++LP HIL + E +GP+A+++ PTRELA QI FS+++ +R C+YGGT
Sbjct: 409 IAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGT 468
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRMLDMGFEPQI 226
Q +L RGAEI+V TPGR+ID L +G TN+ R+TY+V+DEADRM DMGFEPQ+
Sbjct: 469 GISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQV 528
Query: 227 RKIIQMTR 234
+I+ R
Sbjct: 529 MRIVDNVR 536
Score = 214 (80.4 bits), Expect = 4.7e-52, Sum P(3) = 4.7e-52
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y M +HG Q++RD + DF++G +L+A+ VA+RGLDV+ + VVNY P++ E+Y
Sbjct: 629 YPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDY 688
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
VHR GRT R+ G +YT T + D++ L + VP L
Sbjct: 689 VHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSGSSVPAEL 734
Score = 184 (69.8 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RGAEI+V TPGR+ID L +G TN+ R+TY+V+DEADRM DMGFEPQ+ +I+
Sbjct: 476 ELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNV 535
Query: 294 R 294
R
Sbjct: 536 R 536
Score = 127 (49.8 bits), Expect = 4.7e-52, Sum P(3) = 4.7e-52
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K Y KPT IQAQ+ P +SGRDLIGIA+TGSGKT++ +
Sbjct: 373 KKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLL 413
Score = 124 (48.7 bits), Expect = 2.9e-30, Sum P(3) = 2.9e-30
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 322 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
TN+ R+TY+V+DEADRM DMGFEPQ+ +I+ R
Sbjct: 503 TNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVR 536
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 304 (112.1 bits), Expect = 6.2e-52, Sum P(3) = 6.2e-52
Identities = 61/126 (48%), Positives = 79/126 (62%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+++P HI LE +GPI L++ PTRELA QI F + + +R C YGG
Sbjct: 595 FLIPMFRHIKDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPI 654
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGT---TNVNRITYLVLDEADRMLDMGFEPQIRK 228
Q +L RGAEI+V TPGR+ID L + TN+ R+TY+VLDEADRM DMGFEPQ+ K
Sbjct: 655 KDQIAELKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMK 714
Query: 229 IIQMTR 234
I+ R
Sbjct: 715 ILSNVR 720
Score = 246 (91.7 bits), Expect = 6.2e-52, Sum P(3) = 6.2e-52
Identities = 49/104 (47%), Positives = 67/104 (64%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y M IHG K Q +RD T+ DF++G VLIA+ VA+RGLDV+ +K VVNYD P++ E+Y
Sbjct: 818 YPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDY 877
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPD 504
VHR GRT R+ TG + T T + D+ L ++ Q VP+
Sbjct: 878 VHRAGRTGRAGNTGTAVTFLTEDQERYSVDIAKALKQSGQEVPE 921
Score = 188 (71.2 bits), Expect = 4.4e-39, Sum P(3) = 4.4e-39
Identities = 37/61 (60%), Positives = 46/61 (75%)
Query: 237 DLCRGAEIVVATPGRLIDFLESGT---TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RGAEI+V TPGR+ID L + TN+ R+TY+VLDEADRM DMGFEPQ+ KI+
Sbjct: 660 ELKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNV 719
Query: 294 R 294
R
Sbjct: 720 R 720
Score = 128 (50.1 bits), Expect = 7.6e-33, Sum P(3) = 7.6e-33
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 322 TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
TN+ R+TY+VLDEADRM DMGFEPQ+ KI+ R
Sbjct: 687 TNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVR 720
Score = 115 (45.5 bits), Expect = 6.2e-52, Sum P(3) = 6.2e-52
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
G+ TSIQAQ+ P +SGRD+IG+A+TGSGKT++ I
Sbjct: 560 GFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLI 597
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 278 (102.9 bits), Expect = 1.9e-50, Sum P(3) = 1.9e-50
Identities = 54/114 (47%), Positives = 77/114 (67%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y IHGD+SQ +R++ L FRSG +L+A+ VA+RGLD+ ++K+V+N+D P + E Y
Sbjct: 498 YACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEY 557
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNK 514
VHRIGRT R G++ + F NGN +DL+DIL EA Q VP L LA +++
Sbjct: 558 VHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAKQEVPSWLESLAYEHQ 611
Score = 274 (101.5 bits), Expect = 1.9e-50, Sum P(3) = 1.9e-50
Identities = 57/100 (57%), Positives = 69/100 (69%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS +R +YGG Q RDL RG ++VATPGR
Sbjct: 299 PISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 358
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 359 LLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVE 398
Score = 191 (72.3 bits), Expect = 8.4e-42, Sum P(3) = 8.4e-42
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 343 RDLERGCHLLVATPGRLLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVE 398
Score = 128 (50.1 bits), Expect = 3.0e-35, Sum P(3) = 3.0e-35
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
+L +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 359 LLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVE 398
Score = 91 (37.1 bits), Expect = 1.9e-50, Sum P(3) = 1.9e-50
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
S Y +PT +Q + PI S RDL+ AQTGSGKT + +
Sbjct: 226 SRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLL 264
Score = 44 (20.5 bits), Expect = 4.5e-26, Sum P(3) = 4.5e-26
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 455 DNTENYVH-RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
D E+Y+ +GR ST I+ + +K L+D+LN + D L L+ +
Sbjct: 427 DFLEDYIFLAVGRVG-STSENITQKVVWVEENDKRSFLLDLLNATGK---DSLTLVFVET 482
Query: 514 K 514
K
Sbjct: 483 K 483
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 409 (149.0 bits), Expect = 2.1e-50, Sum P(2) = 2.1e-50
Identities = 102/281 (36%), Positives = 155/281 (55%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
+DL +G +I++ATPGRL D + + I+YLVLDEAD+MLDMGFEPQI KI+ R
Sbjct: 362 KDLLKGVDIIIATPGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIRP 421
Query: 296 AHPVVPVSLF--ISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
V S + RR + E V + + + + + + E + R IQ
Sbjct: 422 DRQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQ- 480
Query: 354 TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQW 413
T + V+ F + R + + +H V S +HG++ Q
Sbjct: 481 TFIESMSPKDKVIIF-------VSRKAVADHLSSDLGIRHISVES-------LHGNREQG 526
Query: 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT 473
+R++ L++F++G + +LIA+D+ASRGLDV D+ +V NYDFP N E YVHR+GRT R+ +T
Sbjct: 527 DRERALKNFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRT 586
Query: 474 GISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNK 514
G+S TL T + A +LI IL A+Q +P+ L+ +A + K
Sbjct: 587 GVSITLITRSDWKIAGELIHILERANQSIPEDLVEMAERYK 627
Score = 268 (99.4 bits), Expect = 3.2e-30, Sum P(2) = 3.2e-30
Identities = 57/125 (45%), Positives = 80/125 (64%)
Query: 110 VKYILPALYHILKMP---KLEEG-DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACL 165
+ Y++P H+ P L+ +GP LVL PTRELA Q++A S +S ++ C+
Sbjct: 293 LSYLMPGFIHVDSQPVVFSLQRARNGPGMLVLTPTRELALQVEAECSKYSYK-GLKSVCV 351
Query: 166 YGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQ 225
YGG + Q +DL +G +I++ATPGRL D + + I+YLVLDEAD+MLDMGFEPQ
Sbjct: 352 YGGGDRDGQIKDLLKGVDIIIATPGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFEPQ 411
Query: 226 IRKII 230
I KI+
Sbjct: 412 IMKIL 416
Score = 141 (54.7 bits), Expect = 2.1e-50, Sum P(2) = 2.1e-50
Identities = 26/38 (68%), Positives = 32/38 (84%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
K +G+ KPT IQ+Q+WPI L G DLIG+AQTG+GKTLS
Sbjct: 257 KKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLS 294
Score = 46 (21.3 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLS---GRDLIGIAQTGSGKTLSLTIE 80
VA G GK Y P I S P+ S R+ G+ + L+L +E
Sbjct: 284 VAQTGTGKTLSYLMPGFIHVDSQPVVFSLQRARNGPGMLVLTPTRELALQVE 335
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 293 (108.2 bits), Expect = 2.5e-50, Sum P(3) = 2.5e-50
Identities = 82/235 (34%), Positives = 128/235 (54%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ +ILPA+ HIL P+ GP LV+APTRELA QI + R + I A +YGG
Sbjct: 191 LSFILPAIEHILAQPRQSYYPGPSVLVVAPTRELANQINQEAEQYLRLVNIEIATIYGGA 250
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQI--- 226
+ Q L R +IVV TPGR+IDF+ESG ++ I++LV+DEADR+++MGFE QI
Sbjct: 251 PRRSQQLQLSRRPKIVVGTPGRIIDFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGI 310
Query: 227 -------RKIIQMTRT--RDLCRGAEIVVATPGRL-IDFLE-SGTTNVNRITYLVLDEAD 275
R+++ + T + + AE + TP RL I + + N+++ +V +AD
Sbjct: 311 FNSIRPDRQVLYWSATWPKKVSSFAEKHIRTPIRLQIGSSQLTANKNISQKFKIVPTDAD 370
Query: 276 RMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYL 330
++ D + + +I A ++ + DT+ H+++S NV RI L
Sbjct: 371 KV-DALMDT-LGEIYSADEKAQTLI--FTMTKKGADTLKHYIQSNGDNV-RIDTL 420
Score = 219 (82.2 bits), Expect = 2.5e-50, Sum P(3) = 2.5e-50
Identities = 48/133 (36%), Positives = 83/133 (62%)
Query: 388 GTET-KHYGVSSS-LYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDI 445
G +T KHY S+ R +HGD Q R++ ++DF++ +++++A+DVASRGLD++ I
Sbjct: 400 GADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIKGI 459
Query: 446 KYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQ---DLIDILNEAHQFV 502
+V+N+ P + E YVHRIGRT R+ G S+++ + + + + DL ++L + Q V
Sbjct: 460 SHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNSLDDMELVGDLTNLLQRSEQEV 519
Query: 503 PDRLL-LLAAKNK 514
P L + A +N+
Sbjct: 520 PSEFLDINAIRNR 532
Score = 121 (47.7 bits), Expect = 2.5e-50, Sum P(3) = 2.5e-50
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+ KPT +Q+ WPI LSG D++GI++TGSGKTLS +
Sbjct: 159 FEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFIL 195
Score = 118 (46.6 bits), Expect = 7.8e-31, Sum P(3) = 7.8e-31
Identities = 40/132 (30%), Positives = 64/132 (48%)
Query: 224 PQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFE 283
P I I+ R + G ++V P R + + N YL L + G
Sbjct: 196 PAIEHILAQPR-QSYYPGPSVLVVAPTREL----ANQINQEAEQYLRLVNIEIATIYGGA 250
Query: 284 PQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGF 343
P+ + +Q++R P + V + R I+ F+ESG ++ I++LV+DEADR+++MGF
Sbjct: 251 PRRSQQLQLSRR--PKIVVG---TPGR--IIDFMESGDLSLKNISFLVVDEADRLMEMGF 303
Query: 344 EPQIRKIIQMTR 355
E QI I R
Sbjct: 304 EQQIDGIFNSIR 315
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 255 (94.8 bits), Expect = 4.4e-50, Sum P(3) = 4.4e-50
Identities = 54/117 (46%), Positives = 76/117 (64%)
Query: 114 LPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMY 173
LP L +L + ++ P+A+V++PTRELA QI + F+ + I+ AC++GG K
Sbjct: 129 LPCLKKVLDLKTKQKSCRPLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDE 188
Query: 174 QTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
Q R+ + A +VVATPGRL D G+ ++ R+ YLVLDEADRMLD GFE I+ II
Sbjct: 189 Q-REALKSAAVVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDII 244
Score = 251 (93.4 bits), Expect = 4.4e-50, Sum P(3) = 4.4e-50
Identities = 52/107 (48%), Positives = 72/107 (67%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
++ GIHGD SQ R ++L F+SG VL+A+DVA+RGLD+ +K VVN FP E+Y
Sbjct: 348 FKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDY 407
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLL 507
VHRIGRT R+ G + TLFT + ++ LI++L A+Q VP+ LL
Sbjct: 408 VHRIGRTGRAGADGHAITLFTETDKAQSGALINVLKAANQEVPEALL 454
Score = 157 (60.3 bits), Expect = 8.6e-40, Sum P(3) = 8.6e-40
Identities = 31/61 (50%), Positives = 41/61 (67%)
Query: 230 IQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 289
++ R+ + A +VVATPGRL D G+ ++ R+ YLVLDEADRMLD GFE I+ I
Sbjct: 184 VKKDEQREALKSAAVVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDI 243
Query: 290 I 290
I
Sbjct: 244 I 244
Score = 126 (49.4 bits), Expect = 4.4e-50, Sum P(3) = 4.4e-50
Identities = 21/35 (60%), Positives = 30/35 (85%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
G+ PT+IQ+ +WP+ +GRD+IGIA+TGSGKTL+
Sbjct: 92 GFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLA 126
Score = 103 (41.3 bits), Expect = 1.7e-34, Sum P(4) = 1.7e-34
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 320 GTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
G+ ++ R+ YLVLDEADRMLD GFE I+ II
Sbjct: 213 GSLDLGRVKYLVLDEADRMLDKGFEQDIKDII 244
Score = 45 (20.9 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 487 KAQDLIDILNEAHQFVPDRLLLLAAKNK 514
K Q L+ ILN + PD++L K
Sbjct: 307 KEQRLVQILNRHQRGTPDKVLAFCLYKK 334
Score = 37 (18.1 bits), Expect = 1.7e-34, Sum P(4) = 1.7e-34
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 224 PQIRKIIQMTRTRDLCRGAEIVVATPGR 251
P ++K++ + + CR +V++ P R
Sbjct: 130 PCLKKVLDLKTKQKSCRPLAVVIS-PTR 156
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 399 (145.5 bits), Expect = 5.0e-50, Sum P(2) = 5.0e-50
Identities = 99/281 (35%), Positives = 157/281 (55%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
+D+ +G +I++ATPGRL D + N+ ITYLVLDEAD+MLD+GFE QI KI+ R
Sbjct: 333 QDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRP 392
Query: 296 AHPVVPVSLFISERRDTILH-FL-ESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
+ S + + H +L E V + + +D + + + E + R + Q
Sbjct: 393 DRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQE 452
Query: 354 TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQW 413
FL + ++V + + +++ ++ G+ +HGD+ Q
Sbjct: 453 -------FLQSLSPKDKVIVFVSRKLIADDLS---SDLSIQGIP-----VQSLHGDREQS 497
Query: 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT 473
+R++ L DF++G + +LIA+D+ASRGLDV D+ +V NY+FP N E YVHR+GRT R+ K
Sbjct: 498 DRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKM 557
Query: 474 GISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNK 514
G S TL T + A +LI+IL A+Q +P+ LL +A + K
Sbjct: 558 GESVTLMTQDDWKVAGELIEILQRANQSIPEDLLSMAEQYK 598
Score = 268 (99.4 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 56/123 (45%), Positives = 80/123 (65%)
Query: 110 VKYILPALYHILKMPKLEEG--DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
+ Y++P H+ P + G +GP LVL PTRELA Q+ A S +S ++ C+YG
Sbjct: 267 LSYLMPGFIHLNSQP-VSRGKRNGPGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYG 324
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
G ++ Q +D+ +G +I++ATPGRL D + N+ ITYLVLDEAD+MLD+GFE QI
Sbjct: 325 GGNRKGQIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIM 384
Query: 228 KII 230
KI+
Sbjct: 385 KIL 387
Score = 146 (56.5 bits), Expect = 5.0e-50, Sum P(2) = 5.0e-50
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIE-----NTQ-VARGSQCG 91
K +G+ KPT IQ+Q+WPI L G DLIGIAQTG+GKTLS + N+Q V+RG + G
Sbjct: 231 KKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNG 289
Score = 44 (20.5 bits), Expect = 2.6e-39, Sum P(2) = 2.6e-39
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+A G GK Y P I S P+ R+ G+ + L+L +
Sbjct: 258 IAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNGPGMLVLTPTRELALQV 305
Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 503 PDRLLLLAAKNKPITTRQWKREY 525
PDR ++ + P T RQ Y
Sbjct: 392 PDRQTIMTSATWPDTIRQLAHSY 414
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 285 (105.4 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 58/100 (58%), Positives = 71/100 (71%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG + Q RDL RG ++VATPGR
Sbjct: 266 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGR 325
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 326 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 365
Score = 266 (98.7 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 54/131 (41%), Positives = 81/131 (61%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E +++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 445 VFVETKKGADSLENF-LFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARG 503
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++K+V+N+D P + E YVHRIGRT R G++ + F N N +DL+D+L EA
Sbjct: 504 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAK 563
Query: 500 QFVPDRLLLLA 510
Q VP L +A
Sbjct: 564 QEVPSWLESMA 574
Score = 190 (71.9 bits), Expect = 9.3e-40, Sum P(3) = 9.3e-40
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 310 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 365
Score = 123 (48.4 bits), Expect = 8.5e-33, Sum P(3) = 8.5e-33
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 326 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 365
Score = 85 (35.0 bits), Expect = 5.5e-50, Sum P(3) = 5.5e-50
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 199 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 235
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 399 (145.5 bits), Expect = 6.1e-50, Sum P(2) = 6.1e-50
Identities = 99/281 (35%), Positives = 157/281 (55%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
+D+ +G +I++ATPGRL D + N+ ITYLVLDEAD+MLD+GFE QI KI+ R
Sbjct: 342 QDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRP 401
Query: 296 AHPVVPVSLFISERRDTILH-FL-ESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
+ S + + H +L E V + + +D + + + E + R + Q
Sbjct: 402 DRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQE 461
Query: 354 TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQW 413
FL + ++V + + +++ ++ G+ +HGD+ Q
Sbjct: 462 -------FLQSLSPKDKVIVFVSRKLIADDLS---SDLSIQGIP-----VQSLHGDREQS 506
Query: 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT 473
+R++ L DF++G + +LIA+D+ASRGLDV D+ +V NY+FP N E YVHR+GRT R+ K
Sbjct: 507 DRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKM 566
Query: 474 GISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNK 514
G S TL T + A +LI+IL A+Q +P+ LL +A + K
Sbjct: 567 GESVTLMTQDDWKVAGELIEILQRANQSIPEDLLSMAEQYK 607
Score = 268 (99.4 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 56/123 (45%), Positives = 80/123 (65%)
Query: 110 VKYILPALYHILKMPKLEEG--DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
+ Y++P H+ P + G +GP LVL PTRELA Q+ A S +S ++ C+YG
Sbjct: 276 LSYLMPGFIHLNSQP-VSRGKRNGPGMLVLTPTRELALQVGAECSKYSYK-GLKSVCIYG 333
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
G ++ Q +D+ +G +I++ATPGRL D + N+ ITYLVLDEAD+MLD+GFE QI
Sbjct: 334 GGNRKGQIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIM 393
Query: 228 KII 230
KI+
Sbjct: 394 KIL 396
Score = 146 (56.5 bits), Expect = 6.1e-50, Sum P(2) = 6.1e-50
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIE-----NTQ-VARGSQCG 91
K +G+ KPT IQ+Q+WPI L G DLIGIAQTG+GKTLS + N+Q V+RG + G
Sbjct: 240 KKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNG 298
Score = 44 (20.5 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+A G GK Y P I S P+ R+ G+ + L+L +
Sbjct: 267 IAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNGPGMLVLTPTRELALQV 314
Score = 38 (18.4 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 503 PDRLLLLAAKNKPITTRQWKREY 525
PDR ++ + P T RQ Y
Sbjct: 401 PDRQTIMTSATWPDTIRQLAHSY 423
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 279 (103.3 bits), Expect = 3.1e-49, Sum P(3) = 3.1e-49
Identities = 58/100 (58%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG Q RDL RG ++VATPGR
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 326
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 266 (98.7 bits), Expect = 3.1e-49, Sum P(3) = 3.1e-49
Identities = 54/127 (42%), Positives = 79/127 (62%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G ++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 446 VFVETK-KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 504
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++K+V+N+D P + E YVHRIGRT R G++ + F N N +DL+D+L EA
Sbjct: 505 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNANITKDLLDLLVEAK 564
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 565 QEVPSWL 571
Score = 190 (71.9 bits), Expect = 9.5e-40, Sum P(3) = 9.5e-40
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 123 (48.4 bits), Expect = 8.7e-33, Sum P(3) = 8.7e-33
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 85 (35.0 bits), Expect = 3.1e-49, Sum P(3) = 3.1e-49
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 236
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 285 (105.4 bits), Expect = 3.5e-49, Sum P(3) = 3.5e-49
Identities = 58/100 (58%), Positives = 71/100 (71%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG + Q RDL RG ++VATPGR
Sbjct: 260 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGR 319
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 320 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 359
Score = 266 (98.7 bits), Expect = 3.5e-49, Sum P(3) = 3.5e-49
Identities = 54/131 (41%), Positives = 81/131 (61%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E +++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 439 VFVETKKGADSLENF-LFQERYACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARG 497
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++K+V+N+D P + E YVHRIGRT R G++ + F N N +DL+D+L EA
Sbjct: 498 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAK 557
Query: 500 QFVPDRLLLLA 510
Q VP L +A
Sbjct: 558 QEVPSWLESMA 568
Score = 190 (71.9 bits), Expect = 5.9e-39, Sum P(3) = 5.9e-39
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 304 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 359
Score = 123 (48.4 bits), Expect = 5.4e-32, Sum P(3) = 5.4e-32
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 320 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 359
Score = 77 (32.2 bits), Expect = 3.5e-49, Sum P(3) = 3.5e-49
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSG T + +
Sbjct: 193 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGCTAAFLL 229
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 276 (102.2 bits), Expect = 4.3e-49, Sum P(3) = 4.3e-49
Identities = 57/100 (57%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI F+ R+R +YGG Q RDL RG ++VATPGR
Sbjct: 315 PISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 374
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 375 LVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVE 414
Score = 268 (99.4 bits), Expect = 4.3e-49, Sum P(3) = 4.3e-49
Identities = 52/120 (43%), Positives = 79/120 (65%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y IHGD+SQ +R++ L FRSG +++A+ VA+RGLD+ ++K+V+N+D P + E Y
Sbjct: 514 YACTSIHGDRSQRDREEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEY 573
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPITTRQ 520
VHRIGRT R G++ + + N N +DL+DIL EA Q VP L LA +++ +T +
Sbjct: 574 VHRIGRTGRVGNLGLATSFYNDKNSNITKDLLDILVEAKQEVPSWLENLAYEHQHKSTNR 633
Score = 191 (72.3 bits), Expect = 4.1e-40, Sum P(3) = 4.1e-40
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 359 RDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVE 414
Score = 124 (48.7 bits), Expect = 3.8e-33, Sum P(3) = 3.8e-33
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 375 LVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVE 414
Score = 87 (35.7 bits), Expect = 4.3e-49, Sum P(3) = 4.3e-49
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
S Y +PT +Q + PI + RDL+ AQTGSGKT + +
Sbjct: 241 SRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKTAAFLL 279
Score = 43 (20.2 bits), Expect = 1.0e-25, Sum P(3) = 1.0e-25
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 455 DNTENYVH-RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
D E Y+ +GR ST I+ + +K L+D+LN + D L L+ +
Sbjct: 443 DFLEEYIFLAVGRVG-STSENITQKVVWVEENDKRSFLLDLLNATGK---DSLTLVFVET 498
Query: 514 K 514
K
Sbjct: 499 K 499
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 279 (103.3 bits), Expect = 7.8e-49, Sum P(3) = 7.8e-49
Identities = 58/100 (58%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG Q RDL RG ++VATPGR
Sbjct: 265 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 324
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 325 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 364
Score = 262 (97.3 bits), Expect = 7.8e-49, Sum P(3) = 7.8e-49
Identities = 54/127 (42%), Positives = 79/127 (62%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G ++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 444 VFVETK-KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 502
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++K+V+N+D P + E YVHRIGRT R G++ + F N N +DL+D+L EA
Sbjct: 503 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 562
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 563 QEVPSWL 569
Score = 190 (71.9 bits), Expect = 2.8e-39, Sum P(3) = 2.8e-39
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 309 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 364
Score = 123 (48.4 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 325 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 364
Score = 85 (35.0 bits), Expect = 7.8e-49, Sum P(3) = 7.8e-49
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 198 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 234
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 279 (103.3 bits), Expect = 7.9e-49, Sum P(3) = 7.9e-49
Identities = 58/100 (58%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG Q RDL RG ++VATPGR
Sbjct: 266 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 325
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 326 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 365
Score = 262 (97.3 bits), Expect = 7.9e-49, Sum P(3) = 7.9e-49
Identities = 54/127 (42%), Positives = 79/127 (62%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G ++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 445 VFVETK-KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 503
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++K+V+N+D P + E YVHRIGRT R G++ + F N N +DL+D+L EA
Sbjct: 504 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 563
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 564 QEVPSWL 570
Score = 190 (71.9 bits), Expect = 2.8e-39, Sum P(3) = 2.8e-39
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 310 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 365
Score = 123 (48.4 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 326 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 365
Score = 85 (35.0 bits), Expect = 7.9e-49, Sum P(3) = 7.9e-49
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 199 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 235
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 279 (103.3 bits), Expect = 8.0e-49, Sum P(3) = 8.0e-49
Identities = 58/100 (58%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG Q RDL RG ++VATPGR
Sbjct: 266 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 325
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 326 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 365
Score = 262 (97.3 bits), Expect = 8.0e-49, Sum P(3) = 8.0e-49
Identities = 54/127 (42%), Positives = 79/127 (62%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G ++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 445 VFVETK-KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 503
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++K+V+N+D P + E YVHRIGRT R G++ + F N N +DL+D+L EA
Sbjct: 504 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 563
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 564 QEVPSWL 570
Score = 190 (71.9 bits), Expect = 2.8e-39, Sum P(3) = 2.8e-39
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 310 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 365
Score = 123 (48.4 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 326 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 365
Score = 85 (35.0 bits), Expect = 8.0e-49, Sum P(3) = 8.0e-49
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 199 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 235
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 279 (103.3 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 58/100 (58%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG Q RDL RG ++VATPGR
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 326
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 262 (97.3 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 54/127 (42%), Positives = 79/127 (62%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G ++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 446 VFVETK-KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 504
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++K+V+N+D P + E YVHRIGRT R G++ + F N N +DL+D+L EA
Sbjct: 505 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 564
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 565 QEVPSWL 571
Score = 190 (71.9 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 123 (48.4 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 85 (35.0 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 236
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 279 (103.3 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 58/100 (58%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG Q RDL RG ++VATPGR
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 326
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 262 (97.3 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 54/127 (42%), Positives = 79/127 (62%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G ++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 446 VFVETK-KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 504
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++K+V+N+D P + E YVHRIGRT R G++ + F N N +DL+D+L EA
Sbjct: 505 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 564
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 565 QEVPSWL 571
Score = 190 (71.9 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 123 (48.4 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 85 (35.0 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 236
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 279 (103.3 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 58/100 (58%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG Q RDL RG ++VATPGR
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGR 326
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 262 (97.3 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 54/127 (42%), Positives = 79/127 (62%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G ++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 446 VFVETK-KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 504
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++K+V+N+D P + E YVHRIGRT R G++ + F N N +DL+D+L EA
Sbjct: 505 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 564
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 565 QEVPSWL 571
Score = 190 (71.9 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 123 (48.4 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 85 (35.0 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 236
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 279 (103.3 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 58/100 (58%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG Q RDL RG ++VATPGR
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGR 326
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 262 (97.3 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 54/127 (42%), Positives = 79/127 (62%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G ++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 446 VFVETK-KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 504
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++K+V+N+D P + E YVHRIGRT R G++ + F N N +DL+D+L EA
Sbjct: 505 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 564
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 565 QEVPSWL 571
Score = 190 (71.9 bits), Expect = 2.9e-39, Sum P(3) = 2.9e-39
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 123 (48.4 bits), Expect = 2.6e-32, Sum P(3) = 2.6e-32
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 366
Score = 85 (35.0 bits), Expect = 8.1e-49, Sum P(3) = 8.1e-49
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 236
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 279 (103.3 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 58/100 (58%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG Q RDL RG ++VATPGR
Sbjct: 309 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 368
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 369 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 408
Score = 262 (97.3 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 54/127 (42%), Positives = 79/127 (62%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G ++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 490 VFVETK-KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 548
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++K+V+N+D P + E YVHRIGRT R G++ + F N N +DL+D+L EA
Sbjct: 549 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 608
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 609 QEVPSWL 615
Score = 190 (71.9 bits), Expect = 4.3e-39, Sum P(3) = 4.3e-39
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 353 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 408
Score = 123 (48.4 bits), Expect = 3.9e-32, Sum P(3) = 3.9e-32
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 369 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 408
Score = 85 (35.0 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 242 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 278
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 279 (103.3 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 58/100 (58%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG Q RDL RG ++VATPGR
Sbjct: 262 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 321
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 322 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 361
Score = 260 (96.6 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 53/127 (41%), Positives = 79/127 (62%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G ++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 441 VFVETK-KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 499
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++++V+N+D P + E YVHRIGRT R G++ + F N N +DL+D+L EA
Sbjct: 500 LDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAK 559
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 560 QEVPSWL 566
Score = 190 (71.9 bits), Expect = 4.8e-39, Sum P(3) = 4.8e-39
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 306 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 361
Score = 123 (48.4 bits), Expect = 4.3e-32, Sum P(3) = 4.3e-32
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 322 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 361
Score = 85 (35.0 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 195 YTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLL 231
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 279 (103.3 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 58/100 (58%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG Q RDL RG ++VATPGR
Sbjct: 265 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 324
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 325 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 364
Score = 260 (96.6 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 53/127 (41%), Positives = 79/127 (62%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G ++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 444 VFVETK-KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 502
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++++V+N+D P + E YVHRIGRT R G++ + F N N +DL+D+L EA
Sbjct: 503 LDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAK 562
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 563 QEVPSWL 569
Score = 190 (71.9 bits), Expect = 4.9e-39, Sum P(3) = 4.9e-39
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 309 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 364
Score = 123 (48.4 bits), Expect = 4.5e-32, Sum P(3) = 4.5e-32
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 325 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 364
Score = 85 (35.0 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 198 YTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLL 234
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 276 (102.2 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 57/100 (57%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI F+ R+R +YGG Q RDL RG ++VATPGR
Sbjct: 244 PISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 303
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 304 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 343
Score = 261 (96.9 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 50/106 (47%), Positives = 71/106 (66%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y IHGD+SQ +R++ L FRSG +L+A+ VA+RGLD+ ++K+V+N+D P + E Y
Sbjct: 443 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 502
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
VHRIGRT R G++ + F N N +DL+D+L EA Q VP L
Sbjct: 503 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 548
Score = 190 (71.9 bits), Expect = 3.0e-39, Sum P(3) = 3.0e-39
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 288 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 343
Score = 123 (48.4 bits), Expect = 2.7e-32, Sum P(3) = 2.7e-32
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 304 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 343
Score = 85 (35.0 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 176 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 212
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 276 (102.2 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 57/100 (57%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI F+ R+R +YGG Q RDL RG ++VATPGR
Sbjct: 245 PISLVLAPTRELAVQIYEEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 304
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 305 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 344
Score = 261 (96.9 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 50/106 (47%), Positives = 71/106 (66%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y IHGD+SQ +R++ L FRSG +L+A+ VA+RGLD+ ++K+V+N+D P + E Y
Sbjct: 444 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 503
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
VHRIGRT R G++ + F N N +DL+D+L EA Q VP L
Sbjct: 504 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWL 549
Score = 190 (71.9 bits), Expect = 3.0e-39, Sum P(3) = 3.0e-39
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 289 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 344
Score = 123 (48.4 bits), Expect = 2.8e-32, Sum P(3) = 2.8e-32
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 305 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 344
Score = 85 (35.0 bits), Expect = 1.8e-48, Sum P(3) = 1.8e-48
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 178 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 214
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 289 (106.8 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 62/124 (50%), Positives = 85/124 (68%)
Query: 112 YILPALYHILKMPKL---EEGD-GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
+++P L I +PK+ E+ D GP A++LAPTRELAQQI+ F + + IR + G
Sbjct: 432 FLIPLLVWITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIG 491
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
G S+ Q L G EIV+ATPGRLID LE+ ++R TY+VLDEADRM+DMGFEP ++
Sbjct: 492 GISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQ 551
Query: 228 KIIQ 231
KI++
Sbjct: 552 KILE 555
Score = 227 (85.0 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 53/156 (33%), Positives = 84/156 (53%)
Query: 371 ILVAGIERWVFMEINHN-GTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV 429
+L +G E + + +N G + + Y A +HG K Q R+ L + ++G ++
Sbjct: 645 VLASGFEPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDI 704
Query: 430 LIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQ 489
L+A+DVA RG+D++D+ V+NYD N E+Y+HRIGRT R+ K+G++ T T + +
Sbjct: 705 LVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSSVFY 764
Query: 490 DLID-ILNEAHQFVPDRLLLLA-AKNKPITTRQWKR 523
DL IL P L A++KP T KR
Sbjct: 765 DLKQAILESPVSTCPPELANHPDAQHKPGTILTKKR 800
Score = 176 (67.0 bits), Expect = 7.6e-36, Sum P(3) = 7.6e-36
Identities = 33/51 (64%), Positives = 43/51 (84%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
G EIV+ATPGRLID LE+ ++R TY+VLDEADRM+DMGFEP ++KI++
Sbjct: 505 GCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILE 555
Score = 116 (45.9 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ LE+ ++R TY+VLDEADRM+DMGFEP ++KI++
Sbjct: 516 LIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILE 555
Score = 110 (43.8 bits), Expect = 1.9e-48, Sum P(3) = 1.9e-48
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY PT IQ Q+ PI L RD+IG+A+TGSGKT + I
Sbjct: 397 GYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLI 434
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 294 (108.6 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 81/220 (36%), Positives = 116/220 (52%)
Query: 112 YILPALYHILKMPKL---EEGD-GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
+++P L I +PK+ EE D GP A++LAPTRELAQQI+ F + + IR + G
Sbjct: 444 FLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIG 503
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
G S+ Q L G EIV+ATPGRLID LE+ ++R TY+VLDEADRM+DMGFEP ++
Sbjct: 504 GISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQ 563
Query: 228 KIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLV--LDEADRMLDMGF--E 283
KI++ + + P +++ ESG + + A L +
Sbjct: 564 KILEHMPVSNQKPDTD-EAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRR 622
Query: 284 PQIRKIIQMTRHAHPVVPVSLFI---SERRDTILHFLESG 320
P + I H V +F+ SE+R +L LE G
Sbjct: 623 PAV-VYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQG 661
Score = 217 (81.4 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 42/112 (37%), Positives = 67/112 (59%)
Query: 371 ILVAGIERWVFMEINHN-GTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV 429
IL G + + + +N G + + Y A +HG K Q R+ L + ++G ++
Sbjct: 657 ILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDI 716
Query: 430 LIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFT 481
L+A+DVA RG+D++D+ VVNYD N E+Y+HRIGRT R+ K+G++ T T
Sbjct: 717 LVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLT 768
Score = 116 (45.9 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ LE+ ++R TY+VLDEADRM+DMGFEP ++KI++
Sbjct: 528 LIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILE 567
Score = 112 (44.5 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY +PT IQ Q+ PI L RD+IG+A+TGSGKT + I
Sbjct: 409 GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLI 446
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 294 (108.6 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 81/220 (36%), Positives = 116/220 (52%)
Query: 112 YILPALYHILKMPKL---EEGD-GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
+++P L I +PK+ EE D GP A++LAPTRELAQQI+ F + + IR + G
Sbjct: 445 FLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIG 504
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
G S+ Q L G EIV+ATPGRLID LE+ ++R TY+VLDEADRM+DMGFEP ++
Sbjct: 505 GISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQ 564
Query: 228 KIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLV--LDEADRMLDMGF--E 283
KI++ + + P +++ ESG + + A L +
Sbjct: 565 KILEHMPVSNQKPDTD-EAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRR 623
Query: 284 PQIRKIIQMTRHAHPVVPVSLFI---SERRDTILHFLESG 320
P + I H V +F+ SE+R +L LE G
Sbjct: 624 PAV-VYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQG 662
Score = 217 (81.4 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 42/112 (37%), Positives = 67/112 (59%)
Query: 371 ILVAGIERWVFMEINHN-GTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV 429
IL G + + + +N G + + Y A +HG K Q R+ L + ++G ++
Sbjct: 658 ILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDI 717
Query: 430 LIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFT 481
L+A+DVA RG+D++D+ VVNYD N E+Y+HRIGRT R+ K+G++ T T
Sbjct: 718 LVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLT 769
Score = 116 (45.9 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ LE+ ++R TY+VLDEADRM+DMGFEP ++KI++
Sbjct: 529 LIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILE 568
Score = 112 (44.5 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY +PT IQ Q+ PI L RD+IG+A+TGSGKT + I
Sbjct: 410 GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLI 447
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 294 (108.6 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 81/220 (36%), Positives = 116/220 (52%)
Query: 112 YILPALYHILKMPKL---EEGD-GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
+++P L I +PK+ EE D GP A++LAPTRELAQQI+ F + + IR + G
Sbjct: 445 FLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIG 504
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
G S+ Q L G EIV+ATPGRLID LE+ ++R TY+VLDEADRM+DMGFEP ++
Sbjct: 505 GISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQ 564
Query: 228 KIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLV--LDEADRMLDMGF--E 283
KI++ + + P +++ ESG + + A L +
Sbjct: 565 KILEHMPVSNQKPDTD-EAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRR 623
Query: 284 PQIRKIIQMTRHAHPVVPVSLFI---SERRDTILHFLESG 320
P + I H V +F+ SE+R +L LE G
Sbjct: 624 PAV-VYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQG 662
Score = 217 (81.4 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 42/112 (37%), Positives = 67/112 (59%)
Query: 371 ILVAGIERWVFMEINHN-GTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV 429
IL G + + + +N G + + Y A +HG K Q R+ L + ++G ++
Sbjct: 658 ILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDI 717
Query: 430 LIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFT 481
L+A+DVA RG+D++D+ VVNYD N E+Y+HRIGRT R+ K+G++ T T
Sbjct: 718 LVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLT 769
Score = 116 (45.9 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ LE+ ++R TY+VLDEADRM+DMGFEP ++KI++
Sbjct: 529 LIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILE 568
Score = 112 (44.5 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY +PT IQ Q+ PI L RD+IG+A+TGSGKT + I
Sbjct: 410 GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLI 447
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 294 (108.6 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 81/220 (36%), Positives = 116/220 (52%)
Query: 112 YILPALYHILKMPKL---EEGD-GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
+++P L I +PK+ EE D GP A++LAPTRELAQQI+ F + + IR + G
Sbjct: 445 FLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRTVAVIG 504
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
G S+ Q L G EIV+ATPGRLID LE+ ++R TY+VLDEADRM+DMGFEP ++
Sbjct: 505 GISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQ 564
Query: 228 KIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLV--LDEADRMLDMGF--E 283
KI++ + + P +++ ESG + + A L +
Sbjct: 565 KILEHMPVSNQKPDTD-EAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRR 623
Query: 284 PQIRKIIQMTRHAHPVVPVSLFI---SERRDTILHFLESG 320
P + I H V +F+ SE+R +L LE G
Sbjct: 624 PAV-VYIGSAGKPHERVEQKVFLMSESEKRKKLLAILEQG 662
Score = 217 (81.4 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 42/112 (37%), Positives = 67/112 (59%)
Query: 371 ILVAGIERWVFMEINHN-GTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV 429
IL G + + + +N G + + Y A +HG K Q R+ L + ++G ++
Sbjct: 658 ILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDI 717
Query: 430 LIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFT 481
L+A+DVA RG+D++D+ VVNYD N E+Y+HRIGRT R+ K+G++ T T
Sbjct: 718 LVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLT 769
Score = 116 (45.9 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ LE+ ++R TY+VLDEADRM+DMGFEP ++KI++
Sbjct: 529 LIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILE 568
Score = 112 (44.5 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY +PT IQ Q+ PI L RD+IG+A+TGSGKT + I
Sbjct: 410 GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLI 447
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 270 (100.1 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 53/133 (39%), Positives = 86/133 (64%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G +T + + + A IHGD++Q R+ LR F++G +L+A+DVA+RG
Sbjct: 413 VFVETKR-GADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARG 471
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ + +VVN+D P++ ++YVHRIGRT R+ K+GI+ F N A+ L +++ EA+
Sbjct: 472 LDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEAN 531
Query: 500 QFVPDRLLLLAAK 512
Q VP+ L A++
Sbjct: 532 QEVPEWLTRYASR 544
Score = 259 (96.2 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 59/125 (47%), Positives = 76/125 (60%)
Query: 112 YILPALYHILKMPKLEEGDG-----PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLY 166
+ P + I+K +E G P A++L+PTRELA QI FS ++ Y
Sbjct: 205 FCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAY 264
Query: 167 GGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQI 226
GGT Q R+L RG +I+VATPGRL D LE ++ I +L LDEADRMLDMGFEPQI
Sbjct: 265 GGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQI 324
Query: 227 RKIIQ 231
RKI++
Sbjct: 325 RKIVE 329
Score = 184 (69.8 bits), Expect = 2.4e-40, Sum P(3) = 2.4e-40
Identities = 41/71 (57%), Positives = 48/71 (67%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII-QMTR 294
R+L RG +I+VATPGRL D LE ++ I +L LDEADRMLDMGFEPQIRKI+ QM
Sbjct: 274 RELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDM 333
Query: 295 HAHPVVPVSLF 305
V LF
Sbjct: 334 PPRGVRQTMLF 344
Score = 120 (47.3 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 317 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
LE ++ I +L LDEADRMLDMGFEPQIRKI++
Sbjct: 294 LERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 329
Score = 90 (36.7 bits), Expect = 3.6e-48, Sum P(3) = 3.6e-48
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
Y +PT +Q + PI L+ RDL+ AQTGSGKT
Sbjct: 171 YVRPTPVQRHAIPILLAERDLMACAQTGSGKT 202
Score = 39 (18.8 bits), Expect = 5.3e-24, Sum P(3) = 5.3e-24
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 421 DFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTL 479
DF S YI + + +S L + +++V D + + +H R T+ S TL
Sbjct: 358 DFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLH----AQRETQDKQSLTL 412
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 273 (101.2 bits), Expect = 4.2e-48, Sum P(3) = 4.2e-48
Identities = 58/100 (58%), Positives = 69/100 (69%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+ +YGG Q RDL RG ++VATPGR
Sbjct: 267 PISLVLAPTRELAVQIYEEARKFSYRSRVLPCVVYGGADIGQQIRDLERGCHLLVATPGR 326
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+II+
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIE 366
Score = 262 (97.3 bits), Expect = 4.2e-48, Sum P(3) = 4.2e-48
Identities = 54/127 (42%), Positives = 80/127 (62%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G ++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 446 VFVETK-KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 504
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++K+V+N+D P + E YVHRIGRT R G++ + F N N ++DL+D+L EA
Sbjct: 505 LDISNVKHVINFDLPGDIEEYVHRIGRTGRVGNLGLATSFFNERNINISKDLLDLLVEAK 564
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 565 QEVPSWL 571
Score = 191 (72.3 bits), Expect = 2.2e-39, Sum P(3) = 2.2e-39
Identities = 37/56 (66%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+II+
Sbjct: 311 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIE 366
Score = 124 (48.7 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+II+
Sbjct: 327 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIIE 366
Score = 85 (35.0 bits), Expect = 4.2e-48, Sum P(3) = 4.2e-48
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 200 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 236
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 273 (101.2 bits), Expect = 4.7e-48, Sum P(4) = 4.7e-48
Identities = 56/100 (56%), Positives = 69/100 (69%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
P+ LVLAPTRELA QI F+ R+R A LYGG + Q R+L RG ++VATPGR
Sbjct: 379 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 438
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L D + G + I +LVLDEADRMLDMGFEPQIR+I++
Sbjct: 439 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVE 478
Score = 246 (91.7 bits), Expect = 4.7e-48, Sum P(4) = 4.7e-48
Identities = 48/124 (38%), Positives = 75/124 (60%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
+F+E G ++ + + IHGD++Q R++ LR FRSG +L+A+ VA+RG
Sbjct: 564 IFVETK-KGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 622
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ +K+V+N+D P + E YVHRIGRT R G++ + F N N DL+++L E
Sbjct: 623 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLELLIETK 682
Query: 500 QFVP 503
Q +P
Sbjct: 683 QEIP 686
Score = 181 (68.8 bits), Expect = 4.6e-38, Sum P(4) = 4.6e-38
Identities = 34/56 (60%), Positives = 43/56 (76%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
R+L RG ++VATPGRL D + G + I +LVLDEADRMLDMGFEPQIR+I++
Sbjct: 423 RELDRGCHLIVATPGRLEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVE 478
Score = 119 (46.9 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 320 GTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
G + I +LVLDEADRMLDMGFEPQIR+I++
Sbjct: 446 GKVGLENIRFLVLDEADRMLDMGFEPQIRRIVE 478
Score = 103 (41.3 bits), Expect = 4.7e-48, Sum P(4) = 4.7e-48
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y KPT +Q + PI ++GRDL+ AQTGSGKT + +
Sbjct: 315 YDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLV 351
Score = 54 (24.1 bits), Expect = 2.9e-28, Sum P(4) = 2.9e-28
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 455 DNTENYVH-RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILN---EAHQFVPDRLLLLA 510
D NY+ +GR ST I+ T+ +K L+D+L+ + ++ D L L+
Sbjct: 507 DFLSNYIFLAVGRVG-STSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIF 565
Query: 511 AKNK 514
+ K
Sbjct: 566 VETK 569
Score = 41 (19.5 bits), Expect = 4.7e-48, Sum P(4) = 4.7e-48
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 17 PYFRSGYINVLIASDVASRGLGKNSGYG 44
P+ R G N A+D S+G G+ G G
Sbjct: 49 PHLRGGGGNNN-AADAESQGQGQGQGQG 75
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 263 (97.6 bits), Expect = 6.3e-48, Sum P(3) = 6.3e-48
Identities = 50/134 (37%), Positives = 87/134 (64%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
+F+E + + + + ++A IHGD++Q R++ L F++ ++L+A+ VA+RG
Sbjct: 416 IFVETKRMADQLTDFLIMQN-FKATAIHGDRTQAERERALSAFKANVADILVATAVAARG 474
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++ +V+NYD P + ++YVHRIGRT R+ TG++ + F N N + L++ILNEA+
Sbjct: 475 LDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEAN 534
Query: 500 QFVPDRLLLLAAKN 513
Q VP L L+ +N
Sbjct: 535 QEVPTFLSDLSRQN 548
Score = 258 (95.9 bits), Expect = 6.3e-48, Sum P(3) = 6.3e-48
Identities = 56/100 (56%), Positives = 68/100 (68%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
P ALVLAPTRELA QI F+ +R +YGG Q R++ RG +++VATPGR
Sbjct: 238 PSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGR 297
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L D LE G ++ I YLVLDEADRMLDMGFEPQIR I++
Sbjct: 298 LNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVE 337
Score = 186 (70.5 bits), Expect = 2.0e-40, Sum P(3) = 2.0e-40
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
R++ RG +++VATPGRL D LE G ++ I YLVLDEADRMLDMGFEPQIR I++
Sbjct: 282 REVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVE 337
Score = 127 (49.8 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 317 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
LE G ++ I YLVLDEADRMLDMGFEPQIR I++
Sbjct: 302 LERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVE 337
Score = 97 (39.2 bits), Expect = 6.3e-48, Sum P(3) = 6.3e-48
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
K + + KPT +Q S PI GRDL+ AQTGSGKT
Sbjct: 170 KLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKT 205
Score = 49 (22.3 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 444 DIKYVVNYDFPDNTENYVH-RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQ 500
DI+++ DF DN Y+ +GR ST I+ + + +K L+D+L+ H+
Sbjct: 359 DIQHLAR-DFLDN---YIFLSVGRVG-STSENITQRILYVDDMDKKSALLDLLSAEHK 411
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 268 (99.4 bits), Expect = 7.0e-48, Sum P(3) = 7.0e-48
Identities = 54/131 (41%), Positives = 81/131 (61%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
+F+E + ++ + A IHGD++Q R++ L FRSG +L+A+ VA+RG
Sbjct: 451 IFVETKRMADALSEFLINQR-FPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARG 509
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++ +V+NYD P + ++YVHRIGRT R+ TGI+ F N +DLID+L EAH
Sbjct: 510 LDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLLKEAH 569
Query: 500 QFVPDRLLLLA 510
Q VP L +A
Sbjct: 570 QEVPSFLESIA 580
Score = 255 (94.8 bits), Expect = 7.0e-48, Sum P(3) = 7.0e-48
Identities = 72/198 (36%), Positives = 105/198 (53%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
P +L+LAPTREL QI F+ +R +YGG Q R + RG +++VATPGR
Sbjct: 272 PTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGR 331
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ---MTRTRDLCRGAEIVVAT 248
L+D +E G ++ I YL+LDEADRMLDMGFEPQIR+I++ M D R + AT
Sbjct: 332 LVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPNVND--RQTLMFSAT 389
Query: 249 PGRLI-----DFLESGT-TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPV 302
R I DFL+ +V R+ + + ++ + R ++ H H +
Sbjct: 390 FPRDIQMLARDFLKDYVFLSVGRVGS-TSENITQKVEYVEDHDKRSVLLDILHTHGTTGL 448
Query: 303 SL-FISERR--DTILHFL 317
+L F+ +R D + FL
Sbjct: 449 TLIFVETKRMADALSEFL 466
Score = 127 (49.8 bits), Expect = 1.5e-34, Sum P(3) = 1.5e-34
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ I YL+LDEADRMLDMGFEPQIR+I++
Sbjct: 332 LVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVE 371
Score = 96 (38.9 bits), Expect = 7.0e-48, Sum P(3) = 7.0e-48
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
Y PT +Q S PI ++GRDL+ AQTGSGKT
Sbjct: 206 YQTPTPVQKYSIPIVMNGRDLMACAQTGSGKT 237
Score = 40 (19.1 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 415 RD-QTL-RDFRSGYINVLIASDVASRGLDV-EDIKYVVNYDFPDNTENYVHRIGRT 467
RD Q L RDF Y+ L V S ++ + ++YV ++D + +H G T
Sbjct: 392 RDIQMLARDFLKDYV-FLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTT 446
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 421 (153.3 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 104/286 (36%), Positives = 164/286 (57%)
Query: 229 IIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 288
+ + + ++L G EI+VATPGRLID ++ T +NR++YLVLDEAD+M D GF PQ+
Sbjct: 416 VSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLS 475
Query: 289 IIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 348
I+ H P LF + + + F + ++ +I+ ++ A+ D+ Q+
Sbjct: 476 IVN---HVRPDRQTLLFSATFKPNVEEFARTILSDPIKISIGMIGSANS--DITQIVQVL 530
Query: 349 KIIQMTRFNTCVF-LGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIH 407
K ++N L +L +L+ + +++ N T+ +G ++ +H
Sbjct: 531 KS-DSDKWNWLTNQLALLLSQGSVLIFVSTKVAVEQLSSNLTK---FG-----FQTCTLH 581
Query: 408 GDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRT 467
GDK+Q R QT++ F+ G IN+LIA+DVA+RGLD+ IK VVNYD + E++ HRIGRT
Sbjct: 582 GDKNQIERSQTIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRT 641
Query: 468 ARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
R+ TG++YTL TP + + + DLI L A QFVP L+ +A N
Sbjct: 642 GRAGNTGVAYTLITPKDIHFSVDLIKNLESASQFVPPELIDVAMNN 687
Score = 332 (121.9 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 64/123 (52%), Positives = 85/123 (69%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+I P++ HI+ P LE+GDGPIAL LAPTRELA QI +S+ +++ LYGG SK
Sbjct: 359 FIWPSISHIMDQPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSK 418
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q ++L G EI+VATPGRLID ++ T +NR++YLVLDEAD+M D GF PQ+ I+
Sbjct: 419 QQQCKELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVN 478
Query: 232 MTR 234
R
Sbjct: 479 HVR 481
Score = 115 (45.5 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 1 MKQSVSVRLVSLEARLPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSG 60
+++++ +R+ + P G+ D+ + + K S PT IQ Q+ PI LSG
Sbjct: 287 IRKNLDIRMTGTDLINPVTSFGHYGF---DDILLQAIAKQS-IETPTPIQKQAIPIALSG 342
Query: 61 RDLIGIAQTGSGKT 74
RDLI IA+TGSGKT
Sbjct: 343 RDLIAIAKTGSGKT 356
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 292 (107.8 bits), Expect = 1.8e-47, Sum P(3) = 1.8e-47
Identities = 63/124 (50%), Positives = 85/124 (68%)
Query: 112 YILPALYHILKMPKL---EEGD-GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
+++P L I +PK+ EE D GP A++LAPTRELAQQI+ F + + IR + G
Sbjct: 445 FLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLGIRPVAVIG 504
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
G S+ Q L G EIV+ATPGRLID LE+ ++R TY+VLDEADRM+DMGFEP ++
Sbjct: 505 GISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQ 564
Query: 228 KIIQ 231
KI++
Sbjct: 565 KILE 568
Score = 212 (79.7 bits), Expect = 1.8e-47, Sum P(3) = 1.8e-47
Identities = 37/81 (45%), Positives = 56/81 (69%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y A +HG K Q R+ L + ++G ++L+A+DVA RG+D++D+ VVNYD N E+Y
Sbjct: 670 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 729
Query: 461 VHRIGRTARSTKTGISYTLFT 481
+HRIGRT R+ K+G++ T T
Sbjct: 730 IHRIGRTGRAGKSGVAITFLT 750
Score = 176 (67.0 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 33/51 (64%), Positives = 43/51 (84%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
G EIV+ATPGRLID LE+ ++R TY+VLDEADRM+DMGFEP ++KI++
Sbjct: 518 GCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILE 568
Score = 116 (45.9 bits), Expect = 3.9e-28, Sum P(3) = 3.9e-28
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ LE+ ++R TY+VLDEADRM+DMGFEP ++KI++
Sbjct: 529 LIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILE 568
Score = 112 (44.5 bits), Expect = 1.8e-47, Sum P(3) = 1.8e-47
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY +PT IQ Q+ PI L RD+IG+A+TGSGKT + I
Sbjct: 410 GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLI 447
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 279 (103.3 bits), Expect = 1.9e-47, Sum P(3) = 1.9e-47
Identities = 58/100 (58%), Positives = 70/100 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI+LVLAPTRELA QI FS R+R +YGG Q RDL RG ++VATPGR
Sbjct: 268 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 327
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 328 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 367
Score = 249 (92.7 bits), Expect = 1.9e-47, Sum P(3) = 1.9e-47
Identities = 54/130 (41%), Positives = 79/130 (60%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E G ++ + Y IHGD+SQ +R++ L FRSG +L+A+ VA+RG
Sbjct: 447 VFVETK-KGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 505
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGI---SYTLFTPLNGNKAQDLIDILN 496
LD+ ++K+V+N+D P + E YVHRIGRT R G+ + + F N N +DL+D+L
Sbjct: 506 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLIGLATSFFNERNINITKDLLDLLV 565
Query: 497 EAHQFVPDRL 506
EA Q VP L
Sbjct: 566 EAKQEVPSWL 575
Score = 190 (71.9 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
RDL RG ++VATPGRL+D +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 312 RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 367
Score = 123 (48.4 bits), Expect = 9.5e-31, Sum P(3) = 9.5e-31
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
++ +E G ++ YLVLDEADRMLDMGFEPQIR+I++
Sbjct: 328 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVE 367
Score = 85 (35.0 bits), Expect = 1.9e-47, Sum P(3) = 1.9e-47
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y +PT +Q + PI RDL+ AQTGSGKT + +
Sbjct: 201 YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLL 237
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 266 (98.7 bits), Expect = 2.1e-47, Sum P(3) = 2.1e-47
Identities = 58/140 (41%), Positives = 87/140 (62%)
Query: 382 MEINHNG-----TETKHYG--VSSSLYR----AMGIHGDKSQWNRDQTLRDFRSGYINVL 430
+ N NG TETK ++ LY A IHGD+SQ+ R++ L F++G +L
Sbjct: 438 LSANENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNGAAPIL 497
Query: 431 IASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQD 490
+A+ VA+RGLD+ ++ +V+NYD P + ++YVHRIGRT R+ GI+ F N N +
Sbjct: 498 VATAVAARGLDIPNVSHVINYDLPSDIDDYVHRIGRTGRAGNVGIATAFFNRNNKNVVKG 557
Query: 491 LIDILNEAHQFVPDRLLLLA 510
LI++L+EA+Q VPD L +A
Sbjct: 558 LIELLSEANQEVPDFLTKIA 577
Score = 252 (93.8 bits), Expect = 2.1e-47, Sum P(3) = 2.1e-47
Identities = 53/100 (53%), Positives = 66/100 (66%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
P LV+APTREL QI FS +R +YGG Q R++ RG +++VATPGR
Sbjct: 270 PTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGR 329
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L D L+ G ++ I YLVLDEADRMLDMGFEPQIR I++
Sbjct: 330 LKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVE 369
Score = 182 (69.1 bits), Expect = 4.1e-40, Sum P(3) = 4.1e-40
Identities = 35/56 (62%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
R++ RG +++VATPGRL D L+ G ++ I YLVLDEADRMLDMGFEPQIR I++
Sbjct: 314 RNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVE 369
Score = 123 (48.4 bits), Expect = 5.5e-34, Sum P(3) = 5.5e-34
Identities = 24/36 (66%), Positives = 29/36 (80%)
Query: 317 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
L+ G ++ I YLVLDEADRMLDMGFEPQIR I++
Sbjct: 334 LDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVE 369
Score = 97 (39.2 bits), Expect = 2.1e-47, Sum P(3) = 2.1e-47
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
S + KPT +Q S PI +GRDL+ AQTGSGKT
Sbjct: 204 SRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKT 237
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 385 (140.6 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 104/285 (36%), Positives = 159/285 (55%)
Query: 242 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHA--HPV 299
+++VVATPGRL+D L+ G+ +++++ YLVLDEADRML+ GFE I+ II+ T + +
Sbjct: 232 SQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRETDASKRQTL 291
Query: 300 VPVSLFISERRDTILHFLES------GTTN---VN-RITYLVLDEADRMLDMGFEPQIRK 349
+ + + E R+ F+ + G T+ N RIT +V R + ++K
Sbjct: 292 MFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKK 351
Query: 350 IIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGD 409
+ N V + + LY A +ER + +NG Y IHGD
Sbjct: 352 YHSGPKKNEKVLI-FALYKKE--AARVER----NLKYNG------------YNVAAIHGD 392
Query: 410 KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTAR 469
SQ R Q L +F+SG N+L+A+DVA+RGLD+ ++K V+N FP E+YVHRIGRT R
Sbjct: 393 LSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGR 452
Query: 470 STKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNK 514
+ +TG ++TLFT + A L+++LN A+Q VP+ L+ K
Sbjct: 453 AGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHTK 497
Score = 239 (89.2 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 51/120 (42%), Positives = 79/120 (65%)
Query: 114 LPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMY 173
+PA+ H++ K G LV++PTRELA QI + + + + ++ C+YGG K
Sbjct: 168 VPAISHLMNDQKKR---GIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDE 224
Query: 174 QTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 233
Q L + +++VVATPGRL+D L+ G+ +++++ YLVLDEADRML+ GFE I+ II+ T
Sbjct: 225 QRIQL-KKSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRMLEKGFEEDIKNIIRET 283
Score = 126 (49.4 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIE------NTQVARGSQCGRSN 94
S + KPT IQA +WP LSG+D++G+A+TGSGKT + + N Q RG Q +
Sbjct: 130 SKFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVIS 189
Query: 95 TSKEESSWWNNNVV 108
++E +S +N++
Sbjct: 190 PTRELASQIYDNLI 203
Score = 37 (18.1 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 17 PYFRSGYINVLIASDVASRGLGKNSGYGKP 46
PY SG +V+ VA G GK +G P
Sbjct: 144 PYLLSGK-DVV---GVAETGSGKTFAFGVP 169
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 396 (144.5 bits), Expect = 6.0e-47, Sum P(2) = 6.0e-47
Identities = 100/298 (33%), Positives = 166/298 (55%)
Query: 237 DLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHA 296
D+ +G +I++ATPGRL D + + N+ ITYLV+DEAD+MLDM FEPQIRKI+ R
Sbjct: 341 DISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPD 400
Query: 297 HPVVPVSLFISER-RDTILHFLESGT-TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 354
V S + R L +L+ V + + ++ + + + E + R + Q
Sbjct: 401 RQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEF 460
Query: 355 RFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414
N +++ V+ ++ + +++ ++ G+S A +HG+ Q +
Sbjct: 461 VENMSPNDKVIMF-----VS--QKHIADDLS---SDFNIQGIS-----AESLHGNSEQSD 505
Query: 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
+++ + DF+SG I +LI +D+ SRGLD+ D+ +V NYDFP N + YVHR+G R+ KTG
Sbjct: 506 QERAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTG 565
Query: 475 ISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPITTRQWKREYWRRKSSE 532
S TL T + A +LI IL+ A+Q VP+ L+++A + K + ++ RE RK +
Sbjct: 566 TSVTLITQRDSKMAGELIKILDRANQSVPEDLVVMAEQYK-LNQQKRHRETRSRKPGQ 622
Score = 282 (104.3 bits), Expect = 8.1e-30, Sum P(2) = 8.1e-30
Identities = 56/122 (45%), Positives = 81/122 (66%)
Query: 110 VKYILPALYHILKMP-KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 168
+ Y++P H+ P E+ +GP LVL PTRELA ++A S +S ++ C+YGG
Sbjct: 274 LSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYK-GLKSICIYGG 332
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
++ Q D+ +G +I++ATPGRL D + + N+ ITYLV+DEAD+MLDM FEPQIRK
Sbjct: 333 RNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRK 392
Query: 229 II 230
I+
Sbjct: 393 IL 394
Score = 121 (47.7 bits), Expect = 6.0e-47, Sum P(2) = 6.0e-47
Identities = 24/35 (68%), Positives = 28/35 (80%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
G KPT IQ+Q+WPI L G DLI +AQTG+GKTLS
Sbjct: 241 GIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLS 275
Score = 50 (22.7 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 16/49 (32%), Positives = 21/49 (42%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIE 80
VA G GK Y P I S PI R+ G+ + L+L +E
Sbjct: 265 VAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVE 313
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 261 (96.9 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 51/127 (40%), Positives = 80/127 (62%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
+F+E + + + + +RA IHGD++Q R++ L FRSG +L+A+ VA+RG
Sbjct: 404 IFVETKRMADQLTDFLIMQN-FRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARG 462
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++ +V+NYD P + ++YVHRIGRT R+ TG++ F N N + L +IL EA+
Sbjct: 463 LDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEAN 522
Query: 500 QFVPDRL 506
Q VP L
Sbjct: 523 QEVPSFL 529
Score = 249 (92.7 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 51/100 (51%), Positives = 69/100 (69%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
P A+++APTRELA QI F+ ++ +YGG+ Q R++ RG +++VATPGR
Sbjct: 226 PTAVIMAPTRELATQIFDEAKKFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGR 285
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L D LE G ++ + YLVLDEADRMLDMGFEPQIR I++
Sbjct: 286 LNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVE 325
Score = 184 (69.8 bits), Expect = 6.2e-40, Sum P(3) = 6.2e-40
Identities = 35/56 (62%), Positives = 45/56 (80%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
R++ RG +++VATPGRL D LE G ++ + YLVLDEADRMLDMGFEPQIR I++
Sbjct: 270 REIERGCDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVE 325
Score = 125 (49.1 bits), Expect = 8.5e-34, Sum P(3) = 8.5e-34
Identities = 24/36 (66%), Positives = 29/36 (80%)
Query: 317 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
LE G ++ + YLVLDEADRMLDMGFEPQIR I++
Sbjct: 290 LERGKISLANVKYLVLDEADRMLDMGFEPQIRHIVE 325
Score = 96 (38.9 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
K + + KPT +Q S PI +GRDL+ AQTGSGKT
Sbjct: 158 KLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKT 193
Score = 40 (19.1 bits), Expect = 1.4e-23, Sum P(3) = 1.4e-23
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 420 RDFRSGYINVLIASDVASRGLDV-EDIKYVVNYD 452
RDF S YI L V S ++ + + YV N D
Sbjct: 353 RDFLSDYI-FLSVGRVGSTSENITQKVLYVENQD 385
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 346 (126.9 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 83/197 (42%), Positives = 112/197 (56%)
Query: 42 GYGKPTSIQAQSWPIC-LSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100
G G P I+ SW C +S + L + + G K + TQ GR ++
Sbjct: 364 GKGCPKPIK--SWVQCGISMKILNSLKKHGYEKPTPI---QTQAIPAIMSGRDLIGIAKT 418
Query: 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRI 160
+ ++LP HI+ LEEG+GPIA+++ PTRELA QI FS+T+ +
Sbjct: 419 GSGKT----IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGL 474
Query: 161 RHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRM 217
R C+YGGT Q +L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM
Sbjct: 475 RVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRM 534
Query: 218 LDMGFEPQIRKIIQMTR 234
DMGFEPQ+ +I+ R
Sbjct: 535 FDMGFEPQVMRIVDNVR 551
Score = 216 (81.1 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 44/106 (41%), Positives = 63/106 (59%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y M +HG Q++RD + DF++G +L+A+ VA+RGLDV+ + VVNY P++ E+Y
Sbjct: 644 YPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDY 703
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
VHR GRT R+ G +YT T A D+I L + VP L
Sbjct: 704 VHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
Score = 189 (71.6 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 38/61 (62%), Positives = 47/61 (77%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Query: 294 R 294
R
Sbjct: 551 R 551
Score = 129 (50.5 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K GY KPT IQ Q+ P +SGRDLIGIA+TGSGKT++ +
Sbjct: 388 KKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLL 428
Score = 127 (49.8 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 319 SG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+ R
Sbjct: 514 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVR 551
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 346 (126.9 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 83/197 (42%), Positives = 112/197 (56%)
Query: 42 GYGKPTSIQAQSWPIC-LSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100
G G P I+ SW C +S + L + + G K + TQ GR ++
Sbjct: 364 GKGCPKPIK--SWVQCGISMKILNSLKKHGYEKPTPI---QTQAIPAIMSGRDLIGIAKT 418
Query: 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRI 160
+ ++LP HI+ LEEG+GPIA+++ PTRELA QI FS+T+ +
Sbjct: 419 GSGKT----IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGL 474
Query: 161 RHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRM 217
R C+YGGT Q +L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM
Sbjct: 475 RVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRM 534
Query: 218 LDMGFEPQIRKIIQMTR 234
DMGFEPQ+ +I+ R
Sbjct: 535 FDMGFEPQVMRIVDNVR 551
Score = 216 (81.1 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 44/106 (41%), Positives = 63/106 (59%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y M +HG Q++RD + DF++G +L+A+ VA+RGLDV+ + VVNY P++ E+Y
Sbjct: 644 YPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDY 703
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
VHR GRT R+ G +YT T A D+I L + VP L
Sbjct: 704 VHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
Score = 189 (71.6 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 38/61 (62%), Positives = 47/61 (77%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Query: 294 R 294
R
Sbjct: 551 R 551
Score = 129 (50.5 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K GY KPT IQ Q+ P +SGRDLIGIA+TGSGKT++ +
Sbjct: 388 KKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLL 428
Score = 127 (49.8 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 319 SG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+ R
Sbjct: 514 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVR 551
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 346 (126.9 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 83/197 (42%), Positives = 112/197 (56%)
Query: 42 GYGKPTSIQAQSWPIC-LSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100
G G P I+ SW C +S + L + + G K + TQ GR ++
Sbjct: 364 GKGCPKPIK--SWVQCGISMKILNSLKKHGYEKPTPI---QTQAIPAIMSGRDLIGIAKT 418
Query: 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRI 160
+ ++LP HI+ LEEG+GPIA+++ PTRELA QI FS+T+ +
Sbjct: 419 GSGKT----IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGL 474
Query: 161 RHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRM 217
R C+YGGT Q +L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM
Sbjct: 475 RVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRM 534
Query: 218 LDMGFEPQIRKIIQMTR 234
DMGFEPQ+ +I+ R
Sbjct: 535 FDMGFEPQVMRIVDNVR 551
Score = 216 (81.1 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 44/106 (41%), Positives = 63/106 (59%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y M +HG Q++RD + DF++G +L+A+ VA+RGLDV+ + VVNY P++ E+Y
Sbjct: 644 YPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDY 703
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
VHR GRT R+ G +YT T A D+I L + VP L
Sbjct: 704 VHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
Score = 189 (71.6 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 38/61 (62%), Positives = 47/61 (77%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Query: 294 R 294
R
Sbjct: 551 R 551
Score = 129 (50.5 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K GY KPT IQ Q+ P +SGRDLIGIA+TGSGKT++ +
Sbjct: 388 KKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLL 428
Score = 127 (49.8 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 319 SG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+ R
Sbjct: 514 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVR 551
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 346 (126.9 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 83/197 (42%), Positives = 112/197 (56%)
Query: 42 GYGKPTSIQAQSWPIC-LSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100
G G P I+ SW C +S + L + + G K + TQ GR ++
Sbjct: 364 GKGCPKPIK--SWVQCGISMKILNSLKKHGYEKPTPI---QTQAIPAIMSGRDLIGIAKT 418
Query: 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRI 160
+ ++LP HI+ LEEG+GPIA+++ PTRELA QI FS+T+ +
Sbjct: 419 GSGKT----IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGL 474
Query: 161 RHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRM 217
R C+YGGT Q +L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM
Sbjct: 475 RVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRM 534
Query: 218 LDMGFEPQIRKIIQMTR 234
DMGFEPQ+ +I+ R
Sbjct: 535 FDMGFEPQVMRIVDNVR 551
Score = 216 (81.1 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 44/106 (41%), Positives = 63/106 (59%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y M +HG Q++RD + DF++G +L+A+ VA+RGLDV+ + VVNY P++ E+Y
Sbjct: 644 YPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDY 703
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
VHR GRT R+ G +YT T A D+I L + VP L
Sbjct: 704 VHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
Score = 189 (71.6 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 38/61 (62%), Positives = 47/61 (77%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Query: 294 R 294
R
Sbjct: 551 R 551
Score = 129 (50.5 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K GY KPT IQ Q+ P +SGRDLIGIA+TGSGKT++ +
Sbjct: 388 KKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLL 428
Score = 127 (49.8 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 319 SG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+ R
Sbjct: 514 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVR 551
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 346 (126.9 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 83/197 (42%), Positives = 112/197 (56%)
Query: 42 GYGKPTSIQAQSWPIC-LSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100
G G P I+ SW C +S + L + + G K + TQ GR ++
Sbjct: 364 GKGCPKPIK--SWVQCGISMKILNSLKKHGYEKPTPI---QTQAIPAIMSGRDLIGIAKT 418
Query: 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRI 160
+ ++LP HI+ LEEG+GPIA+++ PTRELA QI FS+T+ +
Sbjct: 419 GSGKT----IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGL 474
Query: 161 RHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRM 217
R C+YGGT Q +L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM
Sbjct: 475 RVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRM 534
Query: 218 LDMGFEPQIRKIIQMTR 234
DMGFEPQ+ +I+ R
Sbjct: 535 FDMGFEPQVMRIVDNVR 551
Score = 216 (81.1 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 44/106 (41%), Positives = 63/106 (59%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y M +HG Q++RD + DF++G +L+A+ VA+RGLDV+ + VVNY P++ E+Y
Sbjct: 644 YPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDY 703
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
VHR GRT R+ G +YT T A D+I L + VP L
Sbjct: 704 VHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
Score = 189 (71.6 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 38/61 (62%), Positives = 47/61 (77%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Query: 294 R 294
R
Sbjct: 551 R 551
Score = 129 (50.5 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K GY KPT IQ Q+ P +SGRDLIGIA+TGSGKT++ +
Sbjct: 388 KKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLL 428
Score = 127 (49.8 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 319 SG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+ R
Sbjct: 514 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVR 551
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 346 (126.9 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 83/197 (42%), Positives = 112/197 (56%)
Query: 42 GYGKPTSIQAQSWPIC-LSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100
G G P I+ SW C +S + L + + G K + TQ GR ++
Sbjct: 364 GKGCPKPIK--SWVQCGISMKILNSLKKHGYEKPTPI---QTQAIPAIMSGRDLIGIAKT 418
Query: 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRI 160
+ ++LP HI+ LEEG+GPIA+++ PTRELA QI FS+T+ +
Sbjct: 419 GSGKT----IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGL 474
Query: 161 RHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRM 217
R C+YGGT Q +L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM
Sbjct: 475 RVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRM 534
Query: 218 LDMGFEPQIRKIIQMTR 234
DMGFEPQ+ +I+ R
Sbjct: 535 FDMGFEPQVMRIVDNVR 551
Score = 216 (81.1 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 44/106 (41%), Positives = 63/106 (59%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y M +HG Q++RD + DF++G +L+A+ VA+RGLDV+ + VVNY P++ E+Y
Sbjct: 644 YPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDY 703
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
VHR GRT R+ G +YT T A D+I L + VP L
Sbjct: 704 VHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
Score = 189 (71.6 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 38/61 (62%), Positives = 47/61 (77%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Query: 294 R 294
R
Sbjct: 551 R 551
Score = 129 (50.5 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K GY KPT IQ Q+ P +SGRDLIGIA+TGSGKT++ +
Sbjct: 388 KKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLL 428
Score = 127 (49.8 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 319 SG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+ R
Sbjct: 514 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVR 551
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 346 (126.9 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 83/197 (42%), Positives = 112/197 (56%)
Query: 42 GYGKPTSIQAQSWPIC-LSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100
G G P I+ SW C +S + L + + G K + TQ GR ++
Sbjct: 364 GKGCPKPIK--SWVQCGISMKILNSLKKHGYEKPTPI---QTQAIPAIMSGRDLIGIAKT 418
Query: 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRI 160
+ ++LP HI+ LEEG+GPIA+++ PTRELA QI FS+T+ +
Sbjct: 419 GSGKT----IAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGL 474
Query: 161 RHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRM 217
R C+YGGT Q +L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM
Sbjct: 475 RVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRM 534
Query: 218 LDMGFEPQIRKIIQMTR 234
DMGFEPQ+ +I+ R
Sbjct: 535 FDMGFEPQVMRIVDNVR 551
Score = 216 (81.1 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 44/106 (41%), Positives = 63/106 (59%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y M +HG Q++RD + DF++G +L+A+ VA+RGLDV+ + VVNY P++ E+Y
Sbjct: 644 YPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDY 703
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
VHR GRT R+ G +YT T A D+I L + VP L
Sbjct: 704 VHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALELSGTAVPPDL 749
Score = 189 (71.6 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 38/61 (62%), Positives = 47/61 (77%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Query: 294 R 294
R
Sbjct: 551 R 551
Score = 129 (50.5 bits), Expect = 1.9e-37, Sum P(3) = 1.9e-37
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K GY KPT IQ Q+ P +SGRDLIGIA+TGSGKT++ +
Sbjct: 388 KKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLL 428
Score = 127 (49.8 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 319 SG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
SG TN+ R+TY+VLDEADRM DMGFEPQ+ +I+ R
Sbjct: 514 SGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVR 551
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 266 (98.7 bits), Expect = 1.9e-46, Sum P(3) = 1.9e-46
Identities = 51/127 (40%), Positives = 83/127 (65%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+E ++ +Y ++ Y + IHGD Q+ R++ L FR+G +L+A+ VA+RG
Sbjct: 497 VFVETKRGASDLAYY-LNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARG 555
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ ++K+V+NYD P + + YVHRIGRT R G++ + F N N A++L+D++ EA+
Sbjct: 556 LDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEAN 615
Query: 500 QFVPDRL 506
Q +PD L
Sbjct: 616 QELPDWL 622
Score = 237 (88.5 bits), Expect = 1.9e-46, Sum P(3) = 1.9e-46
Identities = 54/104 (51%), Positives = 65/104 (62%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMY-QTRDLCRGAEIVVATPG 190
P ALVL+PTREL+ QI F+ I A LYGG Q L G I++ATPG
Sbjct: 316 PSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIATPG 375
Query: 191 RLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 234
RLID ++ G + YLVLDEADRMLDMGFEPQIR+I++ R
Sbjct: 376 RLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNR 419
Score = 176 (67.0 bits), Expect = 4.4e-40, Sum P(3) = 4.4e-40
Identities = 33/54 (61%), Positives = 41/54 (75%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
G I++ATPGRLID ++ G + YLVLDEADRMLDMGFEPQIR+I++ R
Sbjct: 366 GCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNR 419
Score = 124 (48.7 bits), Expect = 1.1e-34, Sum P(3) = 1.1e-34
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ ++ G + YLVLDEADRMLDMGFEPQIR+I++ R
Sbjct: 377 LIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNR 419
Score = 104 (41.7 bits), Expect = 1.9e-46, Sum P(3) = 1.9e-46
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K +GY +PT +Q S P GRDL+ AQTGSGKT + +
Sbjct: 247 KTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLV 287
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 397 (144.8 bits), Expect = 2.2e-46, Sum P(2) = 2.2e-46
Identities = 102/280 (36%), Positives = 152/280 (54%)
Query: 237 DLCRGAEIVVATPGRLIDFLESGT---TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
DL RGAEIVV TPGR+ID L + TN++R TYLVLDEADRM D+GFEPQ+ +II
Sbjct: 537 DLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI 596
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVN-RITYLVLDEADRMLDMGFEPQIRKIIQ 352
R V S + + + + +V E ++++++ P+ K +
Sbjct: 597 RPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEV--RPEESKFSR 654
Query: 353 MTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQ 412
+ LG LY + V + VF++ + + Y + IHG K Q
Sbjct: 655 LLEL-----LGE-LYNNQLDVRTL---VFVD-RQESADALLSDLMKRGYTSNSIHGGKDQ 704
Query: 413 WNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTK 472
+RD T+ D+++G +VLIA+ V +RGLDV+ ++ VVNYD P++ E+YVHR+GRT R+
Sbjct: 705 HDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGH 764
Query: 473 TGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAK 512
TG++ T TP A D+ L + Q VP L LA++
Sbjct: 765 TGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLASQ 804
Score = 312 (114.9 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 65/128 (50%), Positives = 82/128 (64%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+ ++LP HI L+ G+GPIA+++ PTRELA QI F + + IR C YGG
Sbjct: 470 IAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGA 529
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGT---TNVNRITYLVLDEADRMLDMGFEPQI 226
Q DL RGAEIVV TPGR+ID L + TN++R TYLVLDEADRM D+GFEPQ+
Sbjct: 530 PIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQV 589
Query: 227 RKIIQMTR 234
+II R
Sbjct: 590 MRIINNIR 597
Score = 128 (50.1 bits), Expect = 2.2e-46, Sum P(2) = 2.2e-46
Identities = 26/41 (63%), Positives = 33/41 (80%)
Query: 40 NS-GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
NS GY KPTSIQAQ+ P SGRD+IG+A+TGSGKT++ +
Sbjct: 434 NSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLL 474
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 395 (144.1 bits), Expect = 5.8e-46, Sum P(2) = 5.8e-46
Identities = 96/273 (35%), Positives = 148/273 (54%)
Query: 237 DLCRGAEIVVATPGRLIDFLESGT---TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RGA+IVV TPGR+ID L + TN+ R+T+LVLDEADRM DMGF PQI I+
Sbjct: 628 ELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSI 687
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
R + S + + + + +N+ ++ ++ E +
Sbjct: 688 RPDRQTIMFSATFPPKVENVAKKI------LNKPLEIIAGGRS-IVSSDIEQFVEVRPTE 740
Query: 354 TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQW 413
TRF + L L W+ G + +F T+ + +S+S Y+ + +HG K Q
Sbjct: 741 TRFRRLIEL---LSIWYH--KG-QILIFTN-RQETTDNLYRQLSNSQYQCLSLHGSKDQT 793
Query: 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT 473
+RD+T+ DF++ +LIA+ +ASRGLD++D+ VVN+D PD+ E+YVHR+GRT R+
Sbjct: 794 DRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNR 853
Query: 474 GISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
G +YT TP + +I L ++ VPD L
Sbjct: 854 GTAYTFITPDEERFSSSIIKALEQSGSKVPDEL 886
Score = 318 (117.0 bits), Expect = 9.7e-34, Sum P(2) = 9.7e-34
Identities = 66/126 (52%), Positives = 84/126 (66%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LP HIL PK G+G IAL+++PTRELA QI FS+ + +R AC+YGG S
Sbjct: 563 FLLPMFRHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASI 622
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGT---TNVNRITYLVLDEADRMLDMGFEPQIRK 228
Q +L RGA+IVV TPGR+ID L + TN+ R+T+LVLDEADRM DMGF PQI
Sbjct: 623 SEQIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINC 682
Query: 229 IIQMTR 234
I+ R
Sbjct: 683 IVDSIR 688
Score = 128 (50.1 bits), Expect = 5.8e-46, Sum P(2) = 5.8e-46
Identities = 26/41 (63%), Positives = 32/41 (78%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K Y KPTSIQAQ+ P ++GRDLIGIA+TGSGKTL+ +
Sbjct: 525 KKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLL 565
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 290 (107.1 bits), Expect = 6.5e-46, Sum P(3) = 6.5e-46
Identities = 57/124 (45%), Positives = 85/124 (68%)
Query: 112 YILPALYHILKMPKLEEGD----GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L I +PK+E + GP A+++APTRELAQQI+ + F + + I+ + G
Sbjct: 355 FLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLGIKTVSVIG 414
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
G S+ Q L G E+V+ATPGRL+D LE+ +N+ TY++LDEADRMLDMGFEP ++
Sbjct: 415 GASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQ 474
Query: 228 KIIQ 231
K+++
Sbjct: 475 KVLE 478
Score = 199 (75.1 bits), Expect = 6.5e-46, Sum P(3) = 6.5e-46
Identities = 42/120 (35%), Positives = 69/120 (57%)
Query: 380 VFMEINHN-GTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASR 438
+ + +N G + G++ ++ +HG K Q R+ L+ + G ++L+A+DVA R
Sbjct: 576 IIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGR 635
Query: 439 GLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEA 498
G+DV+D+ V+NYD + E+Y HRIGRT R+ K G + T TP + DL +L E+
Sbjct: 636 GIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVYFDLKQVLVES 695
Score = 174 (66.3 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 30/51 (58%), Positives = 43/51 (84%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
G E+V+ATPGRL+D LE+ +N+ TY++LDEADRMLDMGFEP ++K+++
Sbjct: 428 GVEVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLE 478
Score = 119 (46.9 bits), Expect = 6.0e-27, Sum P(3) = 6.0e-27
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
+L LE+ +N+ TY++LDEADRMLDMGFEP ++K+++
Sbjct: 439 LLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLE 478
Score = 110 (43.8 bits), Expect = 6.5e-46, Sum P(3) = 6.5e-46
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K GY +PT IQ Q+ PI L RD+IG+A+TGSGKT + +
Sbjct: 317 KEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLL 357
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 271 (100.5 bits), Expect = 6.7e-46, Sum P(3) = 6.7e-46
Identities = 58/130 (44%), Positives = 83/130 (63%)
Query: 112 YILPALYHILKMPKLEEG---DGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 168
++LP L +I ++P + E +GP A+V+APTRELAQQI+ F+ + R + GG
Sbjct: 367 FVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGG 426
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
S Q + +G EIV+ATPGRLID LE +N+ Y+VLDEADRM+DMGFEPQ+
Sbjct: 427 QSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAG 486
Query: 229 IIQMTRTRDL 238
++ + +L
Sbjct: 487 VLDAMPSSNL 496
Score = 228 (85.3 bits), Expect = 6.7e-46, Sum P(3) = 6.7e-46
Identities = 50/119 (42%), Positives = 74/119 (62%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
YR +HG KSQ R+ +L FR+ NVL+A+DV RG+D+ D+ +V+NYD P + E Y
Sbjct: 601 YRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMY 660
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKA-QDLIDILNEAHQFVPDRLLLL-AAKNKPIT 517
HRIGRT R+ K+G++ T F L+ + DL +L +++ VP L A++ KP T
Sbjct: 661 THRIGRTGRAGKSGVA-TSFLTLHDTEVFYDLKQMLVQSNSAVPPELARHEASRFKPGT 718
Score = 165 (63.1 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 31/53 (58%), Positives = 41/53 (77%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
+ +G EIV+ATPGRLID LE +N+ Y+VLDEADRM+DMGFEPQ+ ++
Sbjct: 436 ITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVL 488
Score = 103 (41.3 bits), Expect = 6.7e-46, Sum P(3) = 6.7e-46
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+ +GY KP+ IQ + P+ L RD+IGIA+TGSGKT + +
Sbjct: 329 ERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVL 369
Score = 103 (41.3 bits), Expect = 7.0e-28, Sum P(3) = 7.0e-28
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
++ LE +N+ Y+VLDEADRM+DMGFEPQ+ ++
Sbjct: 450 LIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVL 488
>GENEDB_PFALCIPARUM|PF08_0096 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003724 "RNA helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 268 (99.4 bits), Expect = 8.3e-46, Sum P(3) = 8.3e-46
Identities = 56/154 (36%), Positives = 93/154 (60%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
+F+E + + +S+ A+ IHGDKSQ R++ L+ F+ G N+L+A+DVA+RG
Sbjct: 650 LFVETKRKADIIERF-LSNQKLNAVCIHGDKSQDERERALKLFKRGIKNILVATDVAARG 708
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ +IK+V+N+D P N ++Y+HRIGRT R+ GI+ + N N +DL+ L E +
Sbjct: 709 LDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNEDNKNIFKDLLATLEECN 768
Query: 500 QFVPDRLLLLAAKNKPIT--TRQWKREYWRRKSS 531
Q +P L L K+ R +K ++ + K++
Sbjct: 769 QQIPRWFLNLVMKHTASARANRNYKYKFMKNKNN 802
Score = 248 (92.4 bits), Expect = 8.3e-46, Sum P(3) = 8.3e-46
Identities = 55/99 (55%), Positives = 65/99 (65%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI L+LAPTRELA QI F I+ LYGG + Q +L +GA+I+VATPGR
Sbjct: 452 PICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGR 511
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
L D LE G + T+LVLDEADRMLDMGF PQIR I+
Sbjct: 512 LNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIV 550
Score = 179 (68.1 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 36/58 (62%), Positives = 44/58 (75%)
Query: 233 TRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
T+ +L +GA+I+VATPGRL D LE G + T+LVLDEADRMLDMGF PQIR I+
Sbjct: 493 TQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIV 550
Score = 114 (45.2 bits), Expect = 7.2e-32, Sum P(3) = 7.2e-32
Identities = 23/35 (65%), Positives = 26/35 (74%)
Query: 317 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
LE G + T+LVLDEADRMLDMGF PQIR I+
Sbjct: 516 LEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIV 550
Score = 91 (37.1 bits), Expect = 8.3e-46, Sum P(3) = 8.3e-46
Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
K Y K T IQ S I ++ DLIG+AQTGSGKT
Sbjct: 378 KKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKT 413
Score = 37 (18.1 bits), Expect = 3.5e-40, Sum P(3) = 3.5e-40
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 32 VASRGLGKNSGYGKP 46
VA G GK +GY P
Sbjct: 405 VAQTGSGKTAGYLLP 419
>UNIPROTKB|Q8IAU1 [details] [associations]
symbol:PF08_0096 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003724 "RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 KO:K11594
HSSP:P10081 EMBL:AL844507 RefSeq:XP_001349420.1
ProteinModelPortal:Q8IAU1 IntAct:Q8IAU1 MINT:MINT-1660402
EnsemblProtists:PF08_0096:mRNA GeneID:2655295 KEGG:pfa:PF08_0096
EuPathDB:PlasmoDB:PF3D7_0810600 HOGENOM:HOG000280970 OMA:NNPFNNN
ProtClustDB:CLSZ2432713 Uniprot:Q8IAU1
Length = 941
Score = 268 (99.4 bits), Expect = 8.3e-46, Sum P(3) = 8.3e-46
Identities = 56/154 (36%), Positives = 93/154 (60%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
+F+E + + +S+ A+ IHGDKSQ R++ L+ F+ G N+L+A+DVA+RG
Sbjct: 650 LFVETKRKADIIERF-LSNQKLNAVCIHGDKSQDERERALKLFKRGIKNILVATDVAARG 708
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ +IK+V+N+D P N ++Y+HRIGRT R+ GI+ + N N +DL+ L E +
Sbjct: 709 LDISNIKHVINFDLPSNIDDYIHRIGRTGRAGNIGIATSFVNEDNKNIFKDLLATLEECN 768
Query: 500 QFVPDRLLLLAAKNKPIT--TRQWKREYWRRKSS 531
Q +P L L K+ R +K ++ + K++
Sbjct: 769 QQIPRWFLNLVMKHTASARANRNYKYKFMKNKNN 802
Score = 248 (92.4 bits), Expect = 8.3e-46, Sum P(3) = 8.3e-46
Identities = 55/99 (55%), Positives = 65/99 (65%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
PI L+LAPTRELA QI F I+ LYGG + Q +L +GA+I+VATPGR
Sbjct: 452 PICLILAPTRELAVQIFYDAKKFCFETGIKPVVLYGGNNIKTQLSNLDKGADIIVATPGR 511
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
L D LE G + T+LVLDEADRMLDMGF PQIR I+
Sbjct: 512 LNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIV 550
Score = 179 (68.1 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 36/58 (62%), Positives = 44/58 (75%)
Query: 233 TRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
T+ +L +GA+I+VATPGRL D LE G + T+LVLDEADRMLDMGF PQIR I+
Sbjct: 493 TQLSNLDKGADIIVATPGRLNDILEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIV 550
Score = 114 (45.2 bits), Expect = 7.2e-32, Sum P(3) = 7.2e-32
Identities = 23/35 (65%), Positives = 26/35 (74%)
Query: 317 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
LE G + T+LVLDEADRMLDMGF PQIR I+
Sbjct: 516 LEKGKIKLFLTTFLVLDEADRMLDMGFSPQIRSIV 550
Score = 91 (37.1 bits), Expect = 8.3e-46, Sum P(3) = 8.3e-46
Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
K Y K T IQ S I ++ DLIG+AQTGSGKT
Sbjct: 378 KKVNYDKTTPIQKYSLNIIMNRNDLIGVAQTGSGKT 413
Score = 37 (18.1 bits), Expect = 3.5e-40, Sum P(3) = 3.5e-40
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 32 VASRGLGKNSGYGKP 46
VA G GK +GY P
Sbjct: 405 VAQTGSGKTAGYLLP 419
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 399 (145.5 bits), Expect = 9.1e-46, Sum P(2) = 9.1e-46
Identities = 106/291 (36%), Positives = 160/291 (54%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM DMGFEPQ+ +II
Sbjct: 629 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNV 688
Query: 294 RHAHPVVPVSLFISERRDTILH-FLESGTTNVNRITYLVLDEADR-MLDMGFEPQIRKII 351
R V S + + + L+ + +V E ++ ++ + + + K++
Sbjct: 689 RPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLL 748
Query: 352 QMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKS 411
++ LG +Y AG VF++ N + +S Y M +HG
Sbjct: 749 EL--------LG--IY----QEAG-SIIVFVDKQENADILLRDLMKAS-YPCMSLHGGID 792
Query: 412 QWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARST 471
Q++RD T+ DF+SG + +LIA+ VA+RGLDV+D+ VVNYD P++ E+YVHR GRT R+
Sbjct: 793 QFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAG 852
Query: 472 KTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPITTRQWK 522
K G +YT TP A D+I ++ + +P L L + K + + K
Sbjct: 853 KKGSAYTFITPEQSRYAGDIIRAMDLSGTLIPAELQALWTEYKALQEAEGK 903
Score = 350 (128.3 bits), Expect = 5.5e-37, Sum P(2) = 5.5e-37
Identities = 70/126 (55%), Positives = 89/126 (70%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+ILP HIL P +E+GDG IA+++APTREL QI I FS+++ +R C+YGGT
Sbjct: 564 FILPMFRHILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGI 623
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRMLDMGFEPQIRK 228
Q +L RGAEI+V TPGR+ID L SG TN+ R+TY+VLDEADRM DMGFEPQ+ +
Sbjct: 624 SEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMR 683
Query: 229 IIQMTR 234
II R
Sbjct: 684 IIDNVR 689
Score = 123 (48.4 bits), Expect = 9.1e-46, Sum P(2) = 9.1e-46
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
G+ KPT IQ Q+ P +SGRDLIGIA+TGSGKTL+ +
Sbjct: 529 GFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFIL 566
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 402 (146.6 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 103/289 (35%), Positives = 162/289 (56%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII-QMTR 294
R+L RG +I+VATPGRL D LE ++ I +L LDEADRMLDMGFEPQIRKI+ QM
Sbjct: 282 RELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDM 341
Query: 295 HAHPVVPVSLFIS------ER--RDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQ 346
V LF + +R D + +++ V T L++ + +LD
Sbjct: 342 PPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSH 401
Query: 347 IRKIIQMTRFNTCVFLGYVLYFWFILVAGIERW--VFMEINHNGTETKHYGVSSSLYRAM 404
+ ++ R N G + G + VF+E G ++ + + + A
Sbjct: 402 LMDLLHAQREN-----G---------IQGKQALTLVFVETKR-GADSLENWLCINGFPAT 446
Query: 405 GIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRI 464
IHGD++Q R+ L+ F+SG +L+A+DVA+RGLD+ + +VVN+D P++ ++YVHRI
Sbjct: 447 SIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 506
Query: 465 GRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
GRT R+ K+G++ F N + A+ L +++ EA+Q VP+ L A+++
Sbjct: 507 GRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYASRS 555
Score = 261 (96.9 bits), Expect = 3.6e-25, Sum P(2) = 3.6e-25
Identities = 54/100 (54%), Positives = 68/100 (68%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
P+A++L+PTRELA QI FS ++ YGGT Q R+L RG +I+VATPGR
Sbjct: 238 PLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGR 297
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L D LE ++ I +L LDEADRMLDMGFEPQIRKI++
Sbjct: 298 LNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 337
Score = 100 (40.3 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
Y KPT +Q + PI L GRDL+ AQTGSGKT
Sbjct: 179 YVKPTPVQRHAIPILLEGRDLMACAQTGSGKT 210
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 385 (140.6 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 96/267 (35%), Positives = 147/267 (55%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVV 300
G +IV+ TPGRL D +ES ++ ++++VLDEADRMLDMGFE +R I+ T +V
Sbjct: 241 GVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMV 300
Query: 301 PVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV 360
+F S +H L + N I +++ D + I + + R +
Sbjct: 301 ---MF-SATWPLDVHKLAQEFMDPNPIK-VIIGSVDLAANHDVMQIIEVLDERARDQRLI 355
Query: 361 FLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLR 420
L Y + R + + E + ++A+ IHG+K+Q R ++L
Sbjct: 356 AL-LEKYH----KSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLS 410
Query: 421 DFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLF 480
F+ G +L+A+DVA+RGLD+ D++ V+NY FP TE+YVHRIGRT R+ K G+++T F
Sbjct: 411 LFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFF 470
Query: 481 TPLNGNKAQDLIDILNEAHQFVPDRLL 507
TPLN A +L+++L EA Q VP LL
Sbjct: 471 TPLNKGLAGELVNVLREAGQVVPADLL 497
Score = 253 (94.1 bits), Expect = 5.3e-27, Sum P(2) = 5.3e-27
Identities = 55/124 (44%), Positives = 76/124 (61%)
Query: 114 LPALYHILKMPKLEEGDG----PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+PA+ H+LK K G P LVL+PTRELA QI V+ ++ C+YGG+
Sbjct: 170 IPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGS 229
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
SK Q + G +IV+ TPGRL D +ES ++ ++++VLDEADRMLDMGFE +R I
Sbjct: 230 SKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFI 289
Query: 230 IQMT 233
+ T
Sbjct: 290 LSNT 293
Score = 123 (48.4 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 23/37 (62%), Positives = 29/37 (78%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+ KP+ IQ+ +WP L GRDLIGIA+TGSGKTL+ I
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGI 170
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 404 (147.3 bits), Expect = 4.0e-45, Sum P(2) = 4.0e-45
Identities = 102/286 (35%), Positives = 157/286 (54%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R+L RG +I+VATPGRL D LE G ++ + +L LDEADRMLDMGFEPQIRKI+Q
Sbjct: 269 RELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDM 328
Query: 296 AHPVVPVSLFIS-------ER--RDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQ 346
P V ++ S +R D + +++ V T L++ + + D
Sbjct: 329 PPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSDKRSH 388
Query: 347 IRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGI 406
+ ++ R N G LV F+E G ++ + + + A I
Sbjct: 389 LMDLLHAQREN-----GNQGKQALTLV-------FVETK-KGADSLENWLCINGFPATTI 435
Query: 407 HGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGR 466
HGD+SQ R+ LR F++G +L+A+DVA+RGLD+ + +VVN+D P++ ++YVHRIGR
Sbjct: 436 HGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGR 495
Query: 467 TARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAK 512
T R+ +G++ F N A+ L +++ EA+Q VPD L A++
Sbjct: 496 TGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVPDWLTRYASR 541
Score = 272 (100.8 bits), Expect = 5.5e-26, Sum P(2) = 5.5e-26
Identities = 59/113 (52%), Positives = 75/113 (66%)
Query: 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL 178
HI + P+ G P+A++L+PTRELA QI FS ++ YGGT Q R+L
Sbjct: 213 HI-ERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIREL 271
Query: 179 CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
RG +I+VATPGRL D LE G ++ + +L LDEADRMLDMGFEPQIRKI+Q
Sbjct: 272 ERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQ 324
Score = 96 (38.9 bits), Expect = 4.0e-45, Sum P(2) = 4.0e-45
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
Y KPT +Q + PI +GRDL+ AQTGSGKT
Sbjct: 166 YVKPTPVQRNAIPILAAGRDLMACAQTGSGKT 197
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 281 (104.0 bits), Expect = 1.7e-44, Sum P(2) = 1.7e-44
Identities = 65/174 (37%), Positives = 96/174 (55%)
Query: 66 IAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALYHILKMPK 125
+ Q GKT + I N ++ + ++ NNN D Y + +
Sbjct: 371 LQQEQEGKTNNHHIINNYNENNDNNENNHNNNNNNNNNNNNSYDYDYDINSS-------- 422
Query: 126 LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIV 185
E L+L PTREL Q+ I F + + I+ +YGG K YQ +L +GA+I+
Sbjct: 423 -ERASDTYGLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADII 481
Query: 186 VATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII-QMTRTRDL 238
VATPGRL+DFLE+G N+ + Y+V+DEADR+LDMGFE Q+RKI+ Q+ + + L
Sbjct: 482 VATPGRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQL 535
Score = 265 (98.3 bits), Expect = 1.2e-44, Sum P(3) = 1.2e-44
Identities = 52/115 (45%), Positives = 77/115 (66%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y A+ IHGDK Q RD+ L ++++ N+L+A+DVASRGLD+++I V+NYD P+ E+Y
Sbjct: 625 YNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDIKNISVVINYDIPNTIEDY 684
Query: 461 VHRIGRTARSTKTG-----ISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLA 510
+HRIGRT R+ K G SY + P A++LI +LN+ +Q VP +L +A
Sbjct: 685 IHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAKELIKLLNKTNQTVPPQLKEIA 739
Score = 186 (70.5 bits), Expect = 1.2e-44, Sum P(3) = 1.2e-44
Identities = 34/54 (62%), Positives = 47/54 (87%)
Query: 237 DLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
+L +GA+I+VATPGRL+DFLE+G N+ + Y+V+DEADR+LDMGFE Q+RKI+
Sbjct: 473 NLKKGADIIVATPGRLLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIM 526
Score = 140 (54.3 bits), Expect = 1.2e-44, Sum P(3) = 1.2e-44
Identities = 27/69 (39%), Positives = 48/69 (69%)
Query: 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIEN-TQVARGSQCGRSNTSKE 98
N+ + +PT+IQ +WPI LSG+DLIG+A+TGSGKTL+ + + + + ++N + +
Sbjct: 304 NNKFSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMHILKHKEIIQNNNNNK 363
Query: 99 ESSWWNNNV 107
+++ NNN+
Sbjct: 364 QTNQ-NNNL 371
Score = 130 (50.8 bits), Expect = 8.3e-39, Sum P(3) = 8.3e-39
Identities = 26/51 (50%), Positives = 38/51 (74%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII-QMTRFNTCVFL 362
+L FLE+G N+ + Y+V+DEADR+LDMGFE Q+RKI+ Q+ + +FL
Sbjct: 488 LLDFLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFL 538
Score = 37 (18.1 bits), Expect = 6.4e-34, Sum P(3) = 6.4e-34
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 112 YILPALYHILK 122
++LP HILK
Sbjct: 341 FVLPCFMHILK 351
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 247 (92.0 bits), Expect = 1.6e-44, Sum P(3) = 1.6e-44
Identities = 56/118 (47%), Positives = 77/118 (65%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHG K Q +RD + F++G +VL+A+DVAS+GLD DI++V+NYD P ENYVH
Sbjct: 375 AVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVH 434
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQ----DLIDILNEAHQFVPDRLLLLAAKNKPI 516
RIGRT R KTGI+ T +N N+++ DL +L EA Q +P +LA N P+
Sbjct: 435 RIGRTGRCGKTGIATTF---INKNQSEITLLDLKHLLQEAKQRIPP---VLAELNGPM 486
Score = 221 (82.9 bits), Expect = 1.6e-44, Sum P(3) = 1.6e-44
Identities = 69/211 (32%), Positives = 104/211 (49%)
Query: 113 ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM------RIRHACLY 166
I+ AL + MP + G+GPIALV+ P+RELA+Q V+ F ++ R+R
Sbjct: 156 IILALQEEIMMP-IAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCI 214
Query: 167 GGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQI 226
GG Q + +G IVVATPGRL D L +++ L LDEADR++D+GFE I
Sbjct: 215 GGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDI 274
Query: 227 RKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG-----TTNVNRITYLVLDEADRMLDM 280
R + +++ R + AT P ++ F S T NV R LD + +
Sbjct: 275 RHVFDHFKSQ---RQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYV 331
Query: 281 GFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
E +I +++ + P PV +F + D
Sbjct: 332 KQEAKIVYLLECLQKTTP--PVLIFCENKAD 360
Score = 116 (45.9 bits), Expect = 1.6e-44, Sum P(3) = 1.6e-44
Identities = 24/37 (64%), Positives = 27/37 (72%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTL 75
K+ G PT IQ Q P+ LSGRD+IGIA TGSGKTL
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTL 149
Score = 72 (30.4 bits), Expect = 4.9e-29, Sum P(3) = 4.9e-29
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 330 LVLDEADRMLDMGFEPQIRKI 350
L LDEADR++D+GFE IR +
Sbjct: 257 LTLDEADRLVDLGFEDDIRHV 277
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 252 (93.8 bits), Expect = 2.0e-44, Sum P(3) = 2.0e-44
Identities = 56/130 (43%), Positives = 78/130 (60%)
Query: 112 YILPALYHILKMPKLE---EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 168
++LP L ++ ++P L DGP ALV+AP+RELA QI + F+ R + GG
Sbjct: 752 FVLPMLSYVKQLPPLTYETSQDGPYALVIAPSRELAIQIYEETNKFASYCSCRTVAVVGG 811
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
+ Q +L RG EIV+ TPGRL D LE T +N+ Y++LDEADRM+DMGFE +
Sbjct: 812 RNAEAQAFELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHY 871
Query: 229 IIQMTRTRDL 238
I+ T +L
Sbjct: 872 ILDKIPTSNL 881
Score = 231 (86.4 bits), Expect = 2.0e-44, Sum P(3) = 2.0e-44
Identities = 48/126 (38%), Positives = 76/126 (60%)
Query: 396 VSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD 455
++ Y+A+ +HG K+Q R+QTL F++ ++L+A+DVA RG+DV +K V+N+D P
Sbjct: 987 ITKMKYKAVALHGGKAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPK 1046
Query: 456 NTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL-AAKNK 514
+ E+Y HRIGRT R+ G++ + T + + DL L ++ VP L A+K K
Sbjct: 1047 DIESYTHRIGRTGRAGMKGLAISFITEHDSHLFYDLKQFLISSNNIVPLELANNPASKVK 1106
Query: 515 PITTRQ 520
P T Q
Sbjct: 1107 PGTVMQ 1112
Score = 155 (59.6 bits), Expect = 4.0e-34, Sum P(3) = 4.0e-34
Identities = 30/54 (55%), Positives = 39/54 (72%)
Query: 237 DLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
+L RG EIV+ TPGRL D LE T +N+ Y++LDEADRM+DMGFE + I+
Sbjct: 820 ELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYIL 873
Score = 116 (45.9 bits), Expect = 2.0e-44, Sum P(3) = 2.0e-44
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K + Y KPT IQ Q+ PI L RDLIGIA+TGSGKT + +
Sbjct: 714 KKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVL 754
Score = 97 (39.2 bits), Expect = 4.1e-28, Sum P(3) = 4.1e-28
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 317 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
LE T +N+ Y++LDEADRM+DMGFE + I+
Sbjct: 839 LEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYIL 873
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 252 (93.8 bits), Expect = 2.0e-44, Sum P(3) = 2.0e-44
Identities = 56/130 (43%), Positives = 78/130 (60%)
Query: 112 YILPALYHILKMPKLE---EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 168
++LP L ++ ++P L DGP ALV+AP+RELA QI + F+ R + GG
Sbjct: 752 FVLPMLSYVKQLPPLTYETSQDGPYALVIAPSRELAIQIYEETNKFASYCSCRTVAVVGG 811
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
+ Q +L RG EIV+ TPGRL D LE T +N+ Y++LDEADRM+DMGFE +
Sbjct: 812 RNAEAQAFELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHY 871
Query: 229 IIQMTRTRDL 238
I+ T +L
Sbjct: 872 ILDKIPTSNL 881
Score = 231 (86.4 bits), Expect = 2.0e-44, Sum P(3) = 2.0e-44
Identities = 48/126 (38%), Positives = 76/126 (60%)
Query: 396 VSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD 455
++ Y+A+ +HG K+Q R+QTL F++ ++L+A+DVA RG+DV +K V+N+D P
Sbjct: 987 ITKMKYKAVALHGGKAQEIREQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPK 1046
Query: 456 NTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLL-AAKNK 514
+ E+Y HRIGRT R+ G++ + T + + DL L ++ VP L A+K K
Sbjct: 1047 DIESYTHRIGRTGRAGMKGLAISFITEHDSHLFYDLKQFLISSNNIVPLELANNPASKVK 1106
Query: 515 PITTRQ 520
P T Q
Sbjct: 1107 PGTVMQ 1112
Score = 155 (59.6 bits), Expect = 4.0e-34, Sum P(3) = 4.0e-34
Identities = 30/54 (55%), Positives = 39/54 (72%)
Query: 237 DLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
+L RG EIV+ TPGRL D LE T +N+ Y++LDEADRM+DMGFE + I+
Sbjct: 820 ELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYIL 873
Score = 116 (45.9 bits), Expect = 2.0e-44, Sum P(3) = 2.0e-44
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K + Y KPT IQ Q+ PI L RDLIGIA+TGSGKT + +
Sbjct: 714 KKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVL 754
Score = 97 (39.2 bits), Expect = 4.1e-28, Sum P(3) = 4.1e-28
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 317 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
LE T +N+ Y++LDEADRM+DMGFE + I+
Sbjct: 839 LEKAYTVLNQCNYVILDEADRMMDMGFEDTVHYIL 873
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 247 (92.0 bits), Expect = 2.3e-44, Sum P(3) = 2.3e-44
Identities = 55/118 (46%), Positives = 77/118 (65%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHG K Q +R+ + F++G +VL+A+DVAS+GLD DI++V+NYD P ENYVH
Sbjct: 424 AVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 483
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQ----DLIDILNEAHQFVPDRLLLLAAKNKPI 516
RIGRT R KTGI+ T +N N+++ DL +L EA Q +P +LA N P+
Sbjct: 484 RIGRTGRCGKTGIATTF---INKNQSETTLLDLKHLLQEAKQRIPP---VLAELNDPM 535
Score = 221 (82.9 bits), Expect = 2.3e-44, Sum P(3) = 2.3e-44
Identities = 68/211 (32%), Positives = 103/211 (48%)
Query: 113 ILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM------RIRHACLY 166
I+ AL + MP + G+GPI L++ P+RELA+Q V+ F + +R
Sbjct: 205 IMIALQEEMMMP-IAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCI 263
Query: 167 GGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQI 226
GG Q + RG IVVATPGRL D L +++ YL LDEADR++D+GFE I
Sbjct: 264 GGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDI 323
Query: 227 RKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG-----TTNVNRITYLVLDEADRMLDM 280
R++ +++ R + AT P ++ F S T NV R LD + +
Sbjct: 324 REVFDHFKSQ---RQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYV 380
Query: 281 GFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
E +I +++ + P PV +F + D
Sbjct: 381 KQEAKIVYLLECLQKTSP--PVLIFCENKAD 409
Score = 117 (46.2 bits), Expect = 2.3e-44, Sum P(3) = 2.3e-44
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVA 85
K G +PT IQ Q P+ L+GRD+IGIA TGSGKTL + +A
Sbjct: 162 KEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIA 208
Score = 81 (33.6 bits), Expect = 8.3e-30, Sum P(3) = 8.3e-30
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 329 YLVLDEADRMLDMGFEPQIRKI 350
YL LDEADR++D+GFE IR++
Sbjct: 305 YLTLDEADRLVDLGFEDDIREV 326
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 235 (87.8 bits), Expect = 3.3e-44, Sum P(3) = 3.3e-44
Identities = 52/108 (48%), Positives = 68/108 (62%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHG K Q R + + FR G +VL+A+DVAS+GLD I++V+NYD P+ ENYVH
Sbjct: 455 AVAIHGGKDQEERTKAIEAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 514
Query: 463 RIGRTARSTKTGISYTLFTPL-NGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRT RS TGI+ T + + DL +L EA Q VP L +L
Sbjct: 515 RIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 562
Score = 228 (85.3 bits), Expect = 3.3e-44, Sum P(3) = 3.3e-44
Identities = 66/215 (30%), Positives = 107/215 (49%)
Query: 112 YILPALYHILKMPK---LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR------IRH 162
+ LP + L+ K + +GP L++ P+RELA+Q +I + R ++ +R
Sbjct: 231 FTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRC 290
Query: 163 ACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGF 222
A GG S Q + G ++VATPGRL+D L+ +++ YL LDEADRM+DMGF
Sbjct: 291 ALCIGGMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGF 350
Query: 223 EPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG-----TTNVNRITYLVLDEADR 276
E IR I + + R + AT P ++ +F +S T NV R LD
Sbjct: 351 EGDIRTIFSYFKGQ---RQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQE 407
Query: 277 MLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
+ + E ++ +++ + P PV +F ++ D
Sbjct: 408 VEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKAD 440
Score = 123 (48.4 bits), Expect = 3.3e-44, Sum P(3) = 3.3e-44
Identities = 28/45 (62%), Positives = 31/45 (68%)
Query: 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
RGL K G +PT IQ Q P LSGRD+IGIA TGSGKTL T+
Sbjct: 190 RGL-KKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTL 233
Score = 90 (36.7 bits), Expect = 7.2e-30, Sum P(3) = 7.2e-30
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
++ L+ +++ YL LDEADRM+DMGFE IR I
Sbjct: 320 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 357
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 269 (99.8 bits), Expect = 3.3e-44, Sum P(3) = 3.3e-44
Identities = 56/122 (45%), Positives = 77/122 (63%)
Query: 112 YILPALYHILKMPKLE---EGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 168
+++P L +I K P+L E DGP ALV+APTREL QQI+ F++ R L GG
Sbjct: 467 FVIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGG 526
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
S Q + +G EI++ATPGRL D LE +N+ Y+VLDEAD M+D+GFEPQ+
Sbjct: 527 QSIEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTS 586
Query: 229 II 230
++
Sbjct: 587 VL 588
Score = 196 (74.1 bits), Expect = 3.3e-44, Sum P(3) = 3.3e-44
Identities = 40/102 (39%), Positives = 58/102 (56%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+H +SQ R+ L F+ VLIA+ VASRG+ V+ + +V+N+D P N E+Y HRIG
Sbjct: 711 LHSGRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIG 770
Query: 466 RTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLL 507
RT R+ G++ + T + DL IL + VP LL
Sbjct: 771 RTGRAGSAGLASSFITDKDVEIMYDLKQILTSTNNIVPIELL 812
Score = 160 (61.4 bits), Expect = 4.8e-32, Sum P(3) = 4.8e-32
Identities = 37/91 (40%), Positives = 53/91 (58%)
Query: 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPV 299
+G EI++ATPGRL D LE +N+ Y+VLDEAD M+D+GFEPQ+ ++ A P
Sbjct: 538 KGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLD----AMP- 592
Query: 300 VPVSLFISERRDTILHFLESGTTNVNRITYL 330
S F+ D + ES +++ R T L
Sbjct: 593 ---SSFLKSEDDEMAEKQESDRSHIYRTTIL 620
Score = 124 (48.7 bits), Expect = 3.3e-44, Sum P(3) = 3.3e-44
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY KP+ IQ QS PI L+GRD++GIA+TGSGKT + I
Sbjct: 432 GYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVI 469
Score = 96 (38.9 bits), Expect = 2.0e-25, Sum P(3) = 2.0e-25
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 317 LESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
LE +N+ Y+VLDEAD M+D+GFEPQ+ ++
Sbjct: 554 LEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVL 588
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 269 (99.8 bits), Expect = 4.5e-44, Sum P(3) = 4.5e-44
Identities = 57/99 (57%), Positives = 70/99 (70%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
P ALVLAPTRELAQQI + FS + +YGG +Q +L RG +I+VAT GR
Sbjct: 331 PRALVLAPTRELAQQIFDEANKFSYGSPVSSVVIYGGAEVFHQINELDRGCDILVATTGR 390
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
L+D L G ++++I YLVLDEADRMLDMGFEPQIR+II
Sbjct: 391 LVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQII 429
Score = 214 (80.4 bits), Expect = 4.5e-44, Sum P(3) = 4.5e-44
Identities = 43/125 (34%), Positives = 73/125 (58%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
+F+E + +T Y ++ + IHGD +Q R+ L+ FRS L+A+D+ASRG
Sbjct: 509 IFVETKRS-CDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASRG 567
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
L + ++ V+N+D P + YVHRIGRT R+ K G++ + F N +L+ ++ ++
Sbjct: 568 LHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASN 627
Query: 500 QFVPD 504
Q +PD
Sbjct: 628 QDIPD 632
Score = 183 (69.5 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 36/54 (66%), Positives = 45/54 (83%)
Query: 237 DLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
+L RG +I+VAT GRL+D L G ++++I YLVLDEADRMLDMGFEPQIR+II
Sbjct: 376 ELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQII 429
Score = 128 (50.1 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
++ L G ++++I YLVLDEADRMLDMGFEPQIR+II
Sbjct: 391 LVDLLMRGRVSLSKIKYLVLDEADRMLDMGFEPQIRQII 429
Score = 101 (40.6 bits), Expect = 4.5e-44, Sum P(3) = 4.5e-44
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
K++ Y KPT +Q + PI L RDL+ AQTGSGKT
Sbjct: 263 KHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKT 298
Score = 37 (18.1 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 439 GLDVEDIKYVVNYDFPDNTENYVHRI 464
G ++ + N D PD E VH +
Sbjct: 616 GAELLKLMKASNQDIPDWFEKMVHNL 641
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 235 (87.8 bits), Expect = 9.8e-44, Sum P(3) = 9.8e-44
Identities = 52/108 (48%), Positives = 68/108 (62%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHG K Q R + + FR G +VL+A+DVAS+GLD I++V+NYD P+ ENYVH
Sbjct: 458 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 517
Query: 463 RIGRTARSTKTGISYTLFTPL-NGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRT RS TGI+ T + + DL +L EA Q VP L +L
Sbjct: 518 RIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 565
Score = 228 (85.3 bits), Expect = 9.8e-44, Sum P(3) = 9.8e-44
Identities = 66/215 (30%), Positives = 107/215 (49%)
Query: 112 YILPALYHILKMPK---LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR-----IRHA 163
+ LP + L+ K + +GP L++ P+RELA+Q ++ + R ++ + H
Sbjct: 234 FTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHC 293
Query: 164 CL-YGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGF 222
L GG S Q + G I+VATPGRL+D L+ +++ YL LDEADRM+DMGF
Sbjct: 294 ALCIGGVSLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGF 353
Query: 223 EPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG-----TTNVNRITYLVLDEADR 276
E IR I + + R + AT P ++ +F +S T NV R LD
Sbjct: 354 EGDIRTIFSYFKGQ---RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE 410
Query: 277 MLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
+ + E ++ +++ + P PV +F ++ D
Sbjct: 411 VEYVKEEAKMVYLLECLQKTPP--PVLIFAKKKAD 443
Score = 119 (46.9 bits), Expect = 9.8e-44, Sum P(3) = 9.8e-44
Identities = 28/45 (62%), Positives = 30/45 (66%)
Query: 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
RGL K G PT IQ Q P LSGRD+IGIA TGSGKTL T+
Sbjct: 193 RGL-KKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTL 236
Score = 90 (36.7 bits), Expect = 2.1e-29, Sum P(3) = 2.1e-29
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
++ L+ +++ YL LDEADRM+DMGFE IR I
Sbjct: 323 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 360
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 235 (87.8 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 52/108 (48%), Positives = 68/108 (62%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHG K Q R + + FR G +VL+A+DVAS+GLD I++V+NYD P+ ENYVH
Sbjct: 459 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
Query: 463 RIGRTARSTKTGISYTLFTPL-NGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRT RS TGI+ T + + DL +L EA Q VP L +L
Sbjct: 519 RIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 566
Score = 225 (84.3 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 65/215 (30%), Positives = 107/215 (49%)
Query: 112 YILPALYHILKMPK---LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR------IRH 162
+ LP + L+ K + +GP L++ P+RELA+Q ++ + R ++ +R
Sbjct: 235 FTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRC 294
Query: 163 ACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGF 222
A GG S Q + G ++VATPGRL+D L+ +++ YL LDEADRM+DMGF
Sbjct: 295 ALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGF 354
Query: 223 EPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG-----TTNVNRITYLVLDEADR 276
E IR I + + R + AT P ++ +F +S T NV R LD
Sbjct: 355 EGDIRTIFSYFKGQ---RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE 411
Query: 277 MLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
+ + E ++ +++ + P PV +F ++ D
Sbjct: 412 VEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKAD 444
Score = 121 (47.7 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 28/45 (62%), Positives = 30/45 (66%)
Query: 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
RGL K G PT IQ Q P LSGRD+IGIA TGSGKTL T+
Sbjct: 194 RGL-KKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTL 237
Score = 90 (36.7 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
++ L+ +++ YL LDEADRM+DMGFE IR I
Sbjct: 324 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 235 (87.8 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 52/108 (48%), Positives = 68/108 (62%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHG K Q R + + FR G +VL+A+DVAS+GLD I++V+NYD P+ ENYVH
Sbjct: 459 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
Query: 463 RIGRTARSTKTGISYTLFTPL-NGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRT RS TGI+ T + + DL +L EA Q VP L +L
Sbjct: 519 RIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 566
Score = 225 (84.3 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 65/215 (30%), Positives = 107/215 (49%)
Query: 112 YILPALYHILKMPK---LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR------IRH 162
+ LP + L+ K + +GP L++ P+RELA+Q ++ + R ++ +R
Sbjct: 235 FTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRC 294
Query: 163 ACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGF 222
A GG S Q + G ++VATPGRL+D L+ +++ YL LDEADRM+DMGF
Sbjct: 295 ALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGF 354
Query: 223 EPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG-----TTNVNRITYLVLDEADR 276
E IR I + + R + AT P ++ +F +S T NV R LD
Sbjct: 355 EGDIRTIFSYFKGQ---RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE 411
Query: 277 MLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
+ + E ++ +++ + P PV +F ++ D
Sbjct: 412 VEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKAD 444
Score = 121 (47.7 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 28/45 (62%), Positives = 30/45 (66%)
Query: 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
RGL K G PT IQ Q P LSGRD+IGIA TGSGKTL T+
Sbjct: 194 RGL-KKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTL 237
Score = 90 (36.7 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
++ L+ +++ YL LDEADRM+DMGFE IR I
Sbjct: 324 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 235 (87.8 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 52/108 (48%), Positives = 68/108 (62%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHG K Q R + + FR G +VL+A+DVAS+GLD I++V+NYD P+ ENYVH
Sbjct: 459 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
Query: 463 RIGRTARSTKTGISYTLFTPL-NGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRT RS TGI+ T + + DL +L EA Q VP L +L
Sbjct: 519 RIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 566
Score = 225 (84.3 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 65/215 (30%), Positives = 107/215 (49%)
Query: 112 YILPALYHILKMPK---LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR------IRH 162
+ LP + L+ K + +GP L++ P+RELA+Q ++ + R ++ +R
Sbjct: 235 FTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRC 294
Query: 163 ACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGF 222
A GG S Q + G ++VATPGRL+D L+ +++ YL LDEADRM+DMGF
Sbjct: 295 ALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGF 354
Query: 223 EPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG-----TTNVNRITYLVLDEADR 276
E IR I + + R + AT P ++ +F +S T NV R LD
Sbjct: 355 EGDIRTIFSYFKGQ---RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE 411
Query: 277 MLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
+ + E ++ +++ + P PV +F ++ D
Sbjct: 412 VEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKAD 444
Score = 121 (47.7 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 28/45 (62%), Positives = 30/45 (66%)
Query: 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
RGL K G PT IQ Q P LSGRD+IGIA TGSGKTL T+
Sbjct: 194 RGL-KKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTL 237
Score = 90 (36.7 bits), Expect = 1.3e-29, Sum P(3) = 1.3e-29
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
++ L+ +++ YL LDEADRM+DMGFE IR I
Sbjct: 324 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 235 (87.8 bits), Expect = 1.5e-43, Sum P(3) = 1.5e-43
Identities = 52/108 (48%), Positives = 68/108 (62%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHG K Q R + + FR G +VL+A+DVAS+GLD I++V+NYD P+ ENYVH
Sbjct: 477 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 536
Query: 463 RIGRTARSTKTGISYTLFTPL-NGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRT RS TGI+ T + + DL +L EA Q VP L +L
Sbjct: 537 RIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 584
Score = 225 (84.3 bits), Expect = 1.5e-43, Sum P(3) = 1.5e-43
Identities = 65/215 (30%), Positives = 107/215 (49%)
Query: 112 YILPALYHILKMPK---LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR------IRH 162
+ LP + L+ K + +GP L++ P+RELA+Q ++ + R ++ +R
Sbjct: 253 FTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRC 312
Query: 163 ACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGF 222
A GG S Q + G ++VATPGRL+D L+ +++ YL LDEADRM+DMGF
Sbjct: 313 ALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGF 372
Query: 223 EPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG-----TTNVNRITYLVLDEADR 276
E IR I + + R + AT P ++ +F +S T NV R LD
Sbjct: 373 EGDIRTIFSYFKGQ---RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE 429
Query: 277 MLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
+ + E ++ +++ + P PV +F ++ D
Sbjct: 430 VEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKAD 462
Score = 121 (47.7 bits), Expect = 1.5e-43, Sum P(3) = 1.5e-43
Identities = 28/45 (62%), Positives = 30/45 (66%)
Query: 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
RGL K G PT IQ Q P LSGRD+IGIA TGSGKTL T+
Sbjct: 212 RGL-KKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTL 255
Score = 90 (36.7 bits), Expect = 1.6e-29, Sum P(3) = 1.6e-29
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
++ L+ +++ YL LDEADRM+DMGFE IR I
Sbjct: 342 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 379
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 235 (87.8 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 52/108 (48%), Positives = 68/108 (62%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHG K Q R + + FR G +VL+A+DVAS+GLD I++V+NYD P+ ENYVH
Sbjct: 486 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 545
Query: 463 RIGRTARSTKTGISYTLFTPL-NGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRT RS TGI+ T + + DL +L EA Q VP L +L
Sbjct: 546 RIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 593
Score = 225 (84.3 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 65/215 (30%), Positives = 107/215 (49%)
Query: 112 YILPALYHILKMPK---LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR------IRH 162
+ LP + L+ K + +GP L++ P+RELA+Q ++ + R ++ +R
Sbjct: 262 FTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRC 321
Query: 163 ACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGF 222
A GG S Q + G ++VATPGRL+D L+ +++ YL LDEADRM+DMGF
Sbjct: 322 ALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGF 381
Query: 223 EPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG-----TTNVNRITYLVLDEADR 276
E IR I + + R + AT P ++ +F +S T NV R LD
Sbjct: 382 EGDIRTIFSYFKGQ---RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE 438
Query: 277 MLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
+ + E ++ +++ + P PV +F ++ D
Sbjct: 439 VEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKAD 471
Score = 121 (47.7 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 28/45 (62%), Positives = 30/45 (66%)
Query: 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
RGL K G PT IQ Q P LSGRD+IGIA TGSGKTL T+
Sbjct: 221 RGL-KKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTL 264
Score = 90 (36.7 bits), Expect = 1.7e-29, Sum P(3) = 1.7e-29
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
++ L+ +++ YL LDEADRM+DMGFE IR I
Sbjct: 351 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 388
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 235 (87.8 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
Identities = 52/108 (48%), Positives = 68/108 (62%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHG K Q R + + FR G +VL+A+DVAS+GLD I++V+NYD P+ ENYVH
Sbjct: 459 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
Query: 463 RIGRTARSTKTGISYTLFTPL-NGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRT RS TGI+ T + + DL +L EA Q VP L +L
Sbjct: 519 RIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 566
Score = 225 (84.3 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
Identities = 65/215 (30%), Positives = 107/215 (49%)
Query: 112 YILPALYHILKMPK---LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR------IRH 162
+ LP + L+ K + +GP L++ P+RELA+Q ++ + R ++ +R
Sbjct: 235 FTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRC 294
Query: 163 ACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGF 222
A GG S Q + G ++VATPGRL+D L+ +++ YL LDEADRM+DMGF
Sbjct: 295 ALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGF 354
Query: 223 EPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG-----TTNVNRITYLVLDEADR 276
E IR I + + R + AT P ++ +F +S T NV R LD
Sbjct: 355 EGDIRTIFSYFKGQ---RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE 411
Query: 277 MLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
+ + E ++ +++ + P PV +F ++ D
Sbjct: 412 VEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKAD 444
Score = 119 (46.9 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
Identities = 28/45 (62%), Positives = 30/45 (66%)
Query: 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
RGL K G PT IQ Q P LSGRD+IGIA TGSGKTL T+
Sbjct: 194 RGL-KKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTL 237
Score = 90 (36.7 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
++ L+ +++ YL LDEADRM+DMGFE IR I
Sbjct: 324 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 235 (87.8 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
Identities = 52/108 (48%), Positives = 68/108 (62%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHG K Q R + + FR G +VL+A+DVAS+GLD I++V+NYD P+ ENYVH
Sbjct: 459 AVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVH 518
Query: 463 RIGRTARSTKTGISYTLFTPL-NGNKAQDLIDILNEAHQFVPDRLLLL 509
RIGRT RS TGI+ T + + DL +L EA Q VP L +L
Sbjct: 519 RIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 566
Score = 225 (84.3 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
Identities = 65/215 (30%), Positives = 107/215 (49%)
Query: 112 YILPALYHILKMPK---LEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR------IRH 162
+ LP + L+ K + +GP L++ P+RELA+Q ++ + R ++ +R
Sbjct: 235 FTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRC 294
Query: 163 ACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGF 222
A GG S Q + G ++VATPGRL+D L+ +++ YL LDEADRM+DMGF
Sbjct: 295 ALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGF 354
Query: 223 EPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG-----TTNVNRITYLVLDEADR 276
E IR I + + R + AT P ++ +F +S T NV R LD
Sbjct: 355 EGDIRTIFSYFKGQ---RQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQE 411
Query: 277 MLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
+ + E ++ +++ + P PV +F ++ D
Sbjct: 412 VEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKAD 444
Score = 119 (46.9 bits), Expect = 2.0e-43, Sum P(3) = 2.0e-43
Identities = 28/45 (62%), Positives = 30/45 (66%)
Query: 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
RGL K G PT IQ Q P LSGRD+IGIA TGSGKTL T+
Sbjct: 194 RGL-KKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTL 237
Score = 90 (36.7 bits), Expect = 2.2e-29, Sum P(3) = 2.2e-29
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
++ L+ +++ YL LDEADRM+DMGFE IR I
Sbjct: 324 LMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 361
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 234 (87.4 bits), Expect = 3.5e-43, Sum P(3) = 3.5e-43
Identities = 50/120 (41%), Positives = 73/120 (60%)
Query: 112 YILPALYHILKMPKLEEGDGPI-ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTS 170
+ LP L H++ +G P+ AL+L PTRELA QI + +S+ + IR ++GG S
Sbjct: 55 FTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVS 114
Query: 171 KMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
Q L G +++VATPGRL+D ++++ LVLDEADRMLDMGF IR+++
Sbjct: 115 INPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVL 174
Score = 227 (85.0 bits), Expect = 3.5e-43, Sum P(3) = 3.5e-43
Identities = 45/100 (45%), Positives = 65/100 (65%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF H ++ R+ IHG+KSQ R + L DF+SG I VL+A+D+A+RG
Sbjct: 250 VFTRTKHGANHLAEQ-LNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARG 308
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTL 479
LD+E++ +VVNY+ P+ E+YVHRIGRT R+ TG + +L
Sbjct: 309 LDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSL 348
Score = 138 (53.6 bits), Expect = 4.7e-33, Sum P(3) = 4.7e-33
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 231 QMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
QM + R G +++VATPGRL+D ++++ LVLDEADRMLDMGF IR+++
Sbjct: 118 QMMKLRG---GVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVL 174
Score = 106 (42.4 bits), Expect = 3.5e-43, Sum P(3) = 3.5e-43
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY +PT IQ Q+ P L GRDL+ AQTG+GKT T+
Sbjct: 20 GYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTL 57
Score = 87 (35.7 bits), Expect = 9.0e-28, Sum P(3) = 9.0e-28
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
+L ++++ LVLDEADRMLDMGF IR+++
Sbjct: 136 LLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVL 174
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 240 (89.5 bits), Expect = 3.8e-43, Sum P(3) = 3.8e-43
Identities = 46/99 (46%), Positives = 68/99 (68%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
IHGD+ Q R+Q L DFR G VL+A+ VA+RGLD+E++++V+N++ P + YVHRIG
Sbjct: 555 IHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIG 614
Query: 466 RTARSTKTGISYTLF-TPLNGNKAQDLIDILNEAHQFVP 503
RT R TG + + F T + + AQ L+ +L++A Q VP
Sbjct: 615 RTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVP 653
Score = 237 (88.5 bits), Expect = 3.8e-43, Sum P(3) = 3.8e-43
Identities = 73/231 (31%), Positives = 120/231 (51%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L H+++ + +E P +++APTREL QI FS +R +YG
Sbjct: 327 FLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYG 386
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + R + +G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF P+++
Sbjct: 387 GTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMK 446
Query: 228 KIIQMTRTRDL-CRGAEIVVAT-PG---RLI-DFLESGT--TNVNRITYLVLDEADRMLD 279
K+I R + AT P RL +FL+S V ++ D +L
Sbjct: 447 KLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQ 506
Query: 280 MGFEPQIRKIIQMTRHAHPVVPVSLFISERR--DTILHFL---ESGTTNVN 325
+G + RK++++ R+ P+ +F+ ++ D I FL + TT+++
Sbjct: 507 VGPVFKKRKLVEILRNIGDERPM-VFVETKKKADFIATFLCQEKISTTSIH 556
Score = 102 (41.0 bits), Expect = 3.8e-43, Sum P(3) = 3.8e-43
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY K T +Q S PI L+GRDL+ AQTGSGKT + +
Sbjct: 291 AGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLL 329
Score = 102 (41.0 bits), Expect = 4.0e-29, Sum P(3) = 4.0e-29
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 324 VNRITYLVLDEADRMLDMGFEPQIRKII 351
+ ++ YLVLDEADRMLDMGF P+++K+I
Sbjct: 422 LKQVKYLVLDEADRMLDMGFGPEMKKLI 449
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 240 (89.5 bits), Expect = 3.8e-43, Sum P(3) = 3.8e-43
Identities = 46/99 (46%), Positives = 68/99 (68%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
IHGD+ Q R+Q L DFR G VL+A+ VA+RGLD+E++++V+N++ P + YVHRIG
Sbjct: 555 IHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIG 614
Query: 466 RTARSTKTGISYTLF-TPLNGNKAQDLIDILNEAHQFVP 503
RT R TG + + F T + + AQ L+ +L++A Q VP
Sbjct: 615 RTGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVP 653
Score = 237 (88.5 bits), Expect = 3.8e-43, Sum P(3) = 3.8e-43
Identities = 73/231 (31%), Positives = 120/231 (51%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L H+++ + +E P +++APTREL QI FS +R +YG
Sbjct: 327 FLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYG 386
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + R + +G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF P+++
Sbjct: 387 GTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMK 446
Query: 228 KIIQMTRTRDL-CRGAEIVVAT-PG---RLI-DFLESGT--TNVNRITYLVLDEADRMLD 279
K+I R + AT P RL +FL+S V ++ D +L
Sbjct: 447 KLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQ 506
Query: 280 MGFEPQIRKIIQMTRHAHPVVPVSLFISERR--DTILHFL---ESGTTNVN 325
+G + RK++++ R+ P+ +F+ ++ D I FL + TT+++
Sbjct: 507 VGPVFKKRKLVEILRNIGDERPM-VFVETKKKADFIATFLCQEKISTTSIH 556
Score = 102 (41.0 bits), Expect = 3.8e-43, Sum P(3) = 3.8e-43
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY K T +Q S PI L+GRDL+ AQTGSGKT + +
Sbjct: 291 AGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLL 329
Score = 102 (41.0 bits), Expect = 4.0e-29, Sum P(3) = 4.0e-29
Identities = 18/28 (64%), Positives = 25/28 (89%)
Query: 324 VNRITYLVLDEADRMLDMGFEPQIRKII 351
+ ++ YLVLDEADRMLDMGF P+++K+I
Sbjct: 422 LKQVKYLVLDEADRMLDMGFGPEMKKLI 449
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 361 (132.1 bits), Expect = 7.4e-43, Sum P(2) = 7.4e-43
Identities = 94/272 (34%), Positives = 146/272 (53%)
Query: 237 DLCRGA-EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
+ CRG EIV+ATPGRL D G ++ +TY+VLDEADRMLDMGFE IR+I+ R
Sbjct: 207 EACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRP 266
Query: 296 AHPVVPVSLFISER-RDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 354
V S E R + + VN L ++ F P + +++
Sbjct: 267 DRLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKSVTQF-FEFVPHDSRFLRVC 325
Query: 355 RFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414
+ + + I+ ++ V + H ++ G++S G+HG +SQ +
Sbjct: 326 EIVNFLTAAHGQNYKMIIF--VKSKVMAD--HLSSDFCMKGINSQ-----GLHGGRSQSD 376
Query: 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
R+ +L RSG + +L+A+D+ASRG+DV DI +V+NYDFP + E YVHR+GRT R+ + G
Sbjct: 377 REMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKG 436
Query: 475 ISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
+ + + + + LI IL ++ Q VPD+L
Sbjct: 437 EAMSFLWWNDRSNFEGLIQILEKSEQEVPDQL 468
Score = 275 (101.9 bits), Expect = 7.8e-31, Sum P(2) = 7.8e-31
Identities = 62/126 (49%), Positives = 82/126 (65%)
Query: 112 YILPALYHI-LKMPKLEEGD-----GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACL 165
++LPAL HI ++ + E+ D P LVL+PTRELAQQI+ + +S + CL
Sbjct: 138 FLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYN-GYKSVCL 196
Query: 166 YGGTSKMYQTRDLCRGA-EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEP 224
YGG S+ Q + CRG EIV+ATPGRL D G ++ +TY+VLDEADRMLDMGFE
Sbjct: 197 YGGGSRPEQV-EACRGGVEIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEV 255
Query: 225 QIRKII 230
IR+I+
Sbjct: 256 AIRRIL 261
Score = 133 (51.9 bits), Expect = 7.4e-43, Sum P(2) = 7.4e-43
Identities = 24/50 (48%), Positives = 37/50 (74%)
Query: 30 SDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
S+ + G + +G+ KP+ IQ+Q WP+ LSG+D IG++QTGSGKTL+ +
Sbjct: 91 SNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLL 140
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 238 (88.8 bits), Expect = 7.6e-43, Sum P(3) = 7.6e-43
Identities = 51/113 (45%), Positives = 70/113 (61%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHGDKSQ R+ ++ FR G +VL+A+DVAS+GLD +I++V+N+D P ENY+H
Sbjct: 501 AVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIH 560
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQ-DLIDILNEAHQFVPDRLLLLAAKNK 514
RIGRT R G++ T N DL +L EA Q VP LL + N+
Sbjct: 561 RIGRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEIPDDNQ 613
Score = 212 (79.7 bits), Expect = 7.6e-43, Sum P(3) = 7.6e-43
Identities = 63/218 (28%), Positives = 105/218 (48%)
Query: 107 VVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM-------R 159
V + +L AL K+P ++ G+GP L+L P+RELA+Q +++ F+ + +
Sbjct: 275 VFTLPMVLFALEEECKLPIIQ-GEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQ 333
Query: 160 IRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD 219
+R GG Q +G +++ATPGRL+D L N YL LDEADR++D
Sbjct: 334 LRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYLGLDEADRLID 393
Query: 220 MGFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESGTT-----NVNRITYLVLDE 273
+GFE IR ++ + R + AT P ++ +F S NV R L+
Sbjct: 394 LGFEDDIRSVLDNFTNQ---RQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNV 450
Query: 274 ADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
+ + E +I +++ + P PV +F ++D
Sbjct: 451 TQEVEFVKPEAKIVYLLECLQKTPP--PVLIFCENKKD 486
Score = 125 (49.1 bits), Expect = 7.6e-43, Sum P(3) = 7.6e-43
Identities = 26/49 (53%), Positives = 31/49 (63%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQC 90
G KP+ IQ Q P+ LSGRD+IGIA TGSGKTL T+ A +C
Sbjct: 241 GIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFALEEEC 289
Score = 88 (36.0 bits), Expect = 5.8e-30, Sum P(3) = 5.8e-30
Identities = 29/93 (31%), Positives = 40/93 (43%)
Query: 265 RITY-LVLDEADRMLDMGFEPQIRKI-----IQMTRHAHPVVPVSLFISERRDTILHFLE 318
R TY LV + + G PQ+R + I + H I +L L
Sbjct: 312 RQTYDLVNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLLDLLN 371
Query: 319 SGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
N YL LDEADR++D+GFE IR ++
Sbjct: 372 KKKINFKLCKYLGLDEADRLIDLGFEDDIRSVL 404
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 267 (99.0 bits), Expect = 9.0e-43, Sum P(3) = 9.0e-43
Identities = 59/122 (48%), Positives = 81/122 (66%)
Query: 112 YILPALYHILKMPKLEEGD---GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 168
+I+P + I K+P L E + GP A+VLAPTRELAQQIQ + F+ + R + GG
Sbjct: 303 FIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGG 362
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
+ Q+ + +GA IVVATPGRL+D LE +++ TY+V+DEADRMLDMGFE + K
Sbjct: 363 HAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNK 422
Query: 229 II 230
I+
Sbjct: 423 IL 424
Score = 200 (75.5 bits), Expect = 9.0e-43, Sum P(3) = 9.0e-43
Identities = 41/128 (32%), Positives = 75/128 (58%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
+F+ + N E +++ + A+ +HG KSQ R++ + R+ ++L+A+D+A RG
Sbjct: 521 IFVNLKRN-IEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRG 579
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE-A 498
+D+ ++ V+NY+ + E+Y HRIGRT R+ K+G + T P + + DL +L+ A
Sbjct: 580 IDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSA 639
Query: 499 HQFVPDRL 506
+PD L
Sbjct: 640 KAHIPDEL 647
Score = 158 (60.7 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 31/53 (58%), Positives = 41/53 (77%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
+ +GA IVVATPGRL+D LE +++ TY+V+DEADRMLDMGFE + KI+
Sbjct: 372 MSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKIL 424
Score = 103 (41.3 bits), Expect = 9.0e-43, Sum P(3) = 9.0e-43
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K Y +P+SIQ + P+ L +DLIGIA+TGSGKT + I
Sbjct: 265 KKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFII 305
Score = 102 (41.0 bits), Expect = 8.7e-25, Sum P(3) = 8.7e-25
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 291 QMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
QM++ AH VV +L LE +++ TY+V+DEADRMLDMGFE + KI
Sbjct: 371 QMSQGAHIVVATP-------GRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKI 423
Query: 351 I 351
+
Sbjct: 424 L 424
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 221 (82.9 bits), Expect = 1.8e-42, Sum P(3) = 1.8e-42
Identities = 47/95 (49%), Positives = 62/95 (65%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y A IHGD Q R +TL FR G + +L+ASDVA+RGLDV + +V N+D P + E+Y
Sbjct: 277 YDAAPIHGDLDQSQRTRTLDGFREGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDY 336
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDIL 495
VHRIGRT R+ + G + TL P + KA D I+ L
Sbjct: 337 VHRIGRTGRAGRDGKAITLCIPRD-EKALDAIEKL 370
Score = 219 (82.2 bits), Expect = 1.8e-42, Sum P(3) = 1.8e-42
Identities = 44/102 (43%), Positives = 64/102 (62%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
P +LVL PTRELA Q+ +++ +++ A L GG S Q + RG ++++ATPGR
Sbjct: 74 PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRGVDVLIATPGR 133
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 233
L+D E G + + +V+DEADRMLDMGF P I +I +T
Sbjct: 134 LLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLT 175
Score = 151 (58.2 bits), Expect = 2.1e-35, Sum P(3) = 2.1e-35
Identities = 31/68 (45%), Positives = 43/68 (63%)
Query: 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPV 299
RG ++++ATPGRL+D E G + + +V+DEADRMLDMGF P I +I +T P
Sbjct: 122 RGVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLT----PF 177
Query: 300 VPVSLFIS 307
+LF S
Sbjct: 178 TRQTLFFS 185
Score = 124 (48.7 bits), Expect = 1.8e-42, Sum P(3) = 1.8e-42
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIEN-TQVARG 87
+ +GY PT IQA + P L GRD++GIAQTG+GKT S T+ T +ARG
Sbjct: 18 EEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLLARG 67
Score = 101 (40.6 bits), Expect = 3.2e-30, Sum P(3) = 3.2e-30
Identities = 26/64 (40%), Positives = 34/64 (53%)
Query: 315 HFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVA 374
HF E G + + +V+DEADRMLDMGF P I +I +T F L+F +
Sbjct: 137 HF-ERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTR-----QTLFFSATMAP 190
Query: 375 GIER 378
IER
Sbjct: 191 EIER 194
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 273 (101.2 bits), Expect = 2.8e-42, Sum P(3) = 2.8e-42
Identities = 54/121 (44%), Positives = 76/121 (62%)
Query: 395 GVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFP 454
G + Y +GIHGD SQ R Q L DF+SG VL+A+DVA+RGLD+ ++ V+N FP
Sbjct: 435 GTLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFP 494
Query: 455 DNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNK 514
E+YVHRIGRT R+ G + T FTP + + A +L+++L +A Q +P+ L K
Sbjct: 495 LTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGLFKFGTAVK 554
Query: 515 P 515
P
Sbjct: 555 P 555
Score = 219 (82.2 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
Identities = 48/124 (38%), Positives = 73/124 (58%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
V + +PAL ++ + + P LV++PTRELA Q ++ + ++ +YGG
Sbjct: 217 VAFGIPALQYLNGLS--DNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGA 274
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
K Q R + A +++ TPGRL+D + G+ + +++ YLVLDEADRMLD GFE IR I
Sbjct: 275 PKSEQAR-AAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNI 333
Query: 230 IQMT 233
I T
Sbjct: 334 ISHT 337
Score = 156 (60.0 bits), Expect = 2.8e-42, Sum P(3) = 2.8e-42
Identities = 28/54 (51%), Positives = 39/54 (72%)
Query: 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ A +++ TPGRL+D + G+ + +++ YLVLDEADRMLD GFE IR II T
Sbjct: 284 KNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHT 337
Score = 131 (51.2 bits), Expect = 2.8e-42, Sum P(3) = 2.8e-42
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 31 DVASR---GLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARG 87
DV+++ GL KN Y +PT IQA +WP L+GRD++GIA+TGSGKT++ I Q G
Sbjct: 173 DVSAKLREGL-KN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNG 229
Query: 88 SQCGRS 93
+S
Sbjct: 230 LSDNKS 235
Score = 111 (44.1 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 354
+L + G+ + +++ YLVLDEADRMLD GFE IR II T
Sbjct: 296 LLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHT 337
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 261 (96.9 bits), Expect = 2.9e-42, Sum P(3) = 2.9e-42
Identities = 53/124 (42%), Positives = 80/124 (64%)
Query: 112 YILPALYHILKMPKLEE-----GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLY 166
++LP L +I ++P+++E DGP A+VLAPTRELAQQI+ F+ + +
Sbjct: 400 FLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIV 459
Query: 167 GGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQI 226
GG S Q L GAEI++ATPGRL+D +E +++ Y+++DEADRM+D+GFE +
Sbjct: 460 GGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPV 519
Query: 227 RKII 230
KI+
Sbjct: 520 NKIL 523
Score = 206 (77.6 bits), Expect = 2.9e-42, Sum P(3) = 2.9e-42
Identities = 51/142 (35%), Positives = 81/142 (57%)
Query: 380 VFMEINHN----GTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDV 435
VF+ I N E K +G SS + +HG K+Q R+ L R+G +VL+A+D+
Sbjct: 626 VFVNIKRNCDAIAREIKQWGFSS-----VTLHGSKTQEQREAALASVRNGSTDVLVATDL 680
Query: 436 ASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDIL 495
A RG+DV D+ V+N++ + E+Y HRIGRT R+ K+G++ T + + DL +L
Sbjct: 681 AGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMYDLKQML 740
Query: 496 NEAH-QFVPDRLLLL-AAKNKP 515
++ VP+ L AA++KP
Sbjct: 741 IKSPISRVPEELRKHEAAQSKP 762
Score = 147 (56.8 bits), Expect = 8.8e-30, Sum P(3) = 8.8e-30
Identities = 26/53 (49%), Positives = 40/53 (75%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
L GAEI++ATPGRL+D +E +++ Y+++DEADRM+D+GFE + KI+
Sbjct: 471 LRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEADRMIDLGFEEPVNKIL 523
Score = 103 (41.3 bits), Expect = 2.9e-42, Sum P(3) = 2.9e-42
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY +PT IQ + PI + RDLIG+A TGSGKT + +
Sbjct: 365 GYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLL 402
Score = 84 (34.6 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 13/28 (46%), Positives = 23/28 (82%)
Query: 324 VNRITYLVLDEADRMLDMGFEPQIRKII 351
+++ Y+++DEADRM+D+GFE + KI+
Sbjct: 496 LSQCCYVIMDEADRMIDLGFEEPVNKIL 523
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 234 (87.4 bits), Expect = 4.6e-42, Sum P(3) = 4.6e-42
Identities = 51/113 (45%), Positives = 70/113 (61%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+ IHG K Q R + + +R G +VL+A+DVAS+GLD ++++V+NYD PD+ ENYVH
Sbjct: 455 AVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVH 514
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQ-DLIDILNEAHQFVPDRLLLLAAKNK 514
RIGRT RS G++ TL DL +L E Q VPD L LA + +
Sbjct: 515 RIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETE 567
Score = 224 (83.9 bits), Expect = 4.6e-42, Sum P(3) = 4.6e-42
Identities = 65/216 (30%), Positives = 110/216 (50%)
Query: 112 YILPALYHILKMP---KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR------IRH 162
++LP + L+ E +GP L++ P+RELA+Q +I +S+ ++ IR
Sbjct: 231 FVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIR- 289
Query: 163 ACLYGGTSKMYQTRD-LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMG 221
+CL G + + D + RG IVVATPGRL+D L+ ++ YL +DEADRM+DMG
Sbjct: 290 SCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMG 349
Query: 222 FEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG-----TTNVNRITYLVLDEAD 275
FE +R I + + R + AT P ++ +F S T NV R ++
Sbjct: 350 FEEDVRTIFSFFKGQ---RQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQ 406
Query: 276 RMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
++ + E ++ ++ + P PV +F +++D
Sbjct: 407 QVEYVKQEAKVVYLLDCLQKTAP--PVLIFAEKKQD 440
Score = 108 (43.1 bits), Expect = 4.6e-42, Sum P(3) = 4.6e-42
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 28 IASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTL 75
I + +A++G+ KN PT IQ Q P L+GRDLIGIA TGSGKTL
Sbjct: 188 ILNGLAAKGI-KN-----PTPIQVQGLPTVLAGRDLIGIAFTGSGKTL 229
Score = 87 (35.7 bits), Expect = 7.7e-28, Sum P(3) = 7.7e-28
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
++ L+ ++ YL +DEADRM+DMGFE +R I
Sbjct: 320 LMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTI 357
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 387 (141.3 bits), Expect = 6.8e-42, Sum P(2) = 6.8e-42
Identities = 100/277 (36%), Positives = 155/277 (55%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESGT-TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L RG EIVV TPGR+ID L SG TN+ R+T+LV+DEADRM DMGFEPQI +IIQ
Sbjct: 648 ELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNI 707
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
R V S + +T+ + + + V+++ L + P+ + +++
Sbjct: 708 RPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRL 766
Query: 354 TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQW 413
LG W G + VF++ + + + + S Y + +HG K Q
Sbjct: 767 LEL-----LGE----WS--EKG-KILVFVQ-SQEKCDALYRDMIKSSYPCLSLHGGKDQT 813
Query: 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT 473
+R+ T+ DF++ N+LIA+ VA+RGLDV++++ VVN+D P++ E+YVHR+GRT R+ +
Sbjct: 814 DRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRK 873
Query: 474 GISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLA 510
G + T + + A DL+ L + Q VPD L LA
Sbjct: 874 GCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALA 910
Score = 341 (125.1 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 72/126 (57%), Positives = 88/126 (69%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LP L HI P +E GDGPI LV+APTREL QQI + I FS+ + IR +YGG+
Sbjct: 583 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGV 642
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFL--ESGT-TNVNRITYLVLDEADRMLDMGFEPQIRK 228
Q +L RG EIVV TPGR+ID L SG TN+ R+T+LV+DEADRM DMGFEPQI +
Sbjct: 643 AQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITR 702
Query: 229 IIQMTR 234
IIQ R
Sbjct: 703 IIQNIR 708
Score = 118 (46.6 bits), Expect = 6.8e-42, Sum P(2) = 6.8e-42
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K Y KP IQ Q+ PI +SGRD IG+A+TGSGKTL +
Sbjct: 545 KKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVL 585
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 384 (140.2 bits), Expect = 7.1e-42, Sum P(2) = 7.1e-42
Identities = 103/275 (37%), Positives = 148/275 (53%)
Query: 237 DLCRGAEIVVATPGRLIDFLESG---TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
DL RGAEIVVAT GR+ID L + ++ R TY+VLDEADRM DMGFEPQ+ KI
Sbjct: 497 DLKRGAEIVVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANV 556
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVN-RITYLVLDEADRMLDMGFEPQIRKIIQ 352
R V S + + D ++ + + +V E ++++ IR +
Sbjct: 557 RPDRQTVLFSATMPKIMDALVKKVLKNPVEIEVGGKSVVASEITQIVE------IRD--E 608
Query: 353 MTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQ 412
++FN + L LY V + +F+E E + Y M +HG K Q
Sbjct: 609 KSKFNRLLELLGELYKDDDDVRSL---IFVERQEKADELLRELLRKG-YGCMSLHGGKDQ 664
Query: 413 WNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTK 472
+RD T+ DF+SG V+IA+ VA+RGLDV+ +K VVNYD P++ E+YVHR GRT R+
Sbjct: 665 VDRDSTISDFKSGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGN 724
Query: 473 TGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLL 507
TG + T T N A + L ++ Q VP++L+
Sbjct: 725 TGTAVTFVTEEQENCAIGIAKALEQSGQPVPEKLI 759
Score = 297 (109.6 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 80/217 (36%), Positives = 111/217 (51%)
Query: 44 GKPTSIQAQSWPICLSGRDLIG-IAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSW 102
GK Q W +C R ++ IA+ K ++ ++ V GR ++
Sbjct: 370 GKDVPKPVQKWSLCGLTRPILDVIAKLEYDKPTAIQMQALPVIMS---GRDVVGVAKTGS 426
Query: 103 WNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRH 162
+ ++LP HI +++ +GPI L+L PTRELA QI F +T+ +R
Sbjct: 427 GKT----MAFLLPMFRHIKDQEPVKDNEGPIGLILTPTRELAVQIFRDCKPFLKTLGLRA 482
Query: 163 ACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESG---TTNVNRITYLVLDEADRMLD 219
C YGG Q DL RGAEIVVAT GR+ID L + ++ R TY+VLDEADRM D
Sbjct: 483 VCAYGGPPIKDQIADLKRGAEIVVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFD 542
Query: 220 MGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFL 256
MGFEPQ+ KI R D R + AT +++D L
Sbjct: 543 MGFEPQVMKIFANVRP-D--RQTVLFSATMPKIMDAL 576
Score = 121 (47.7 bits), Expect = 7.1e-42, Sum P(2) = 7.1e-42
Identities = 20/37 (54%), Positives = 31/37 (83%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
Y KPT+IQ Q+ P+ +SGRD++G+A+TGSGKT++ +
Sbjct: 398 YDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLL 434
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 383 (139.9 bits), Expect = 2.1e-41, Sum P(2) = 2.1e-41
Identities = 102/292 (34%), Positives = 159/292 (54%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R + +G I+ ATPGRL+D +E G ++ + YLVLDEADRMLDMGF ++K+I
Sbjct: 289 RQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLI----- 343
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRIT--YLVLDEADRMLD--MGFEPQIRK-I 350
++P +P +RR T++ F + V R+ +L D ++ G +++ I
Sbjct: 344 SYPEMPSK----DRRQTLM-FSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNI 398
Query: 351 IQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDK 410
+Q+ R + L +L G VF++ + +L + IHGD+
Sbjct: 399 LQVPRLSKRDKLIEILQS----TGGERTMVFVDTKKKADYLAAFLCQENL-PSTSIHGDR 453
Query: 411 SQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARS 470
Q R+ LRDFRSG +L+A+ VASRGLD+E++++V+N+D P+ E+YVHRIGRT R
Sbjct: 454 EQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRC 513
Query: 471 TKTGISYTLFTPLN-GNKAQDLIDILNEAHQFVPDRLLLLAAKNKPITTRQW 521
TG + + F + G+ Q L+ +L+EA Q VP L +A + I W
Sbjct: 514 GNTGKAVSFFDDQSDGHLVQSLLKVLSEAQQEVPVWLEEMAVQRTNIVLH-W 564
Score = 218 (81.8 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 48/123 (39%), Positives = 71/123 (57%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP + ++K ++ P +++APTREL QI F IR +YG
Sbjct: 221 FLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYG 280
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + R + +G I+ ATPGRL+D +E G ++ + YLVLDEADRMLDMGF ++
Sbjct: 281 GTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMK 340
Query: 228 KII 230
K+I
Sbjct: 341 KLI 343
Score = 99 (39.9 bits), Expect = 2.1e-41, Sum P(2) = 2.1e-41
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 27 LIASDVAS--RGLGKN---SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
L+A + A+ + L KN +GY K T +Q S P+ +GRDL+ AQTGSGKT + +
Sbjct: 166 LLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLL 223
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 380 (138.8 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 94/278 (33%), Positives = 154/278 (55%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R + +G +++ ATPGRL+D ++ G ++ I +LVLDEADRMLDMGFEPQIR I++
Sbjct: 300 RQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADM 359
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
+L S + L Y+ L R+ E +K++ +
Sbjct: 360 TSVEERQTLMFSATFPRDIQLLARDFLK----DYVFLS-VGRVGSTS-ENITQKVVHVED 413
Query: 356 FNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNR 415
+L +L+ + G+ +F+E Y ++S+ + A IHGD++Q R
Sbjct: 414 SEKRSYLLDILHT--LPPEGLTL-IFVETKRMADTLTDYLLNSN-FPATSIHGDRTQRER 469
Query: 416 DQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGI 475
++ L FRSG ++++A+ VASRGLD+ ++ +V+NYD P + ++YVHRIGRT R+ TG
Sbjct: 470 ERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQ 529
Query: 476 SYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
+ F N A++LI++L EA+Q P L+ +A ++
Sbjct: 530 AVAFFNRNNKGIAKELIELLQEANQECPSFLIAMARES 567
Score = 237 (88.5 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 48/100 (48%), Positives = 64/100 (64%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
P L+LAPTREL QI F +R +YGG Q R + +G +++ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L+D ++ G ++ I +LVLDEADRMLDMGFEPQIR I++
Sbjct: 316 LVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVE 355
Score = 111 (44.1 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 23/36 (63%), Positives = 26/36 (72%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
K SGY +PT +Q S PI SGRDL+ AQTGSGKT
Sbjct: 185 KLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKT 220
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 239 (89.2 bits), Expect = 2.8e-41, Sum P(3) = 2.8e-41
Identities = 50/130 (38%), Positives = 84/130 (64%)
Query: 402 RAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYV 461
+++ IHGDKSQ R++ L +F+ G + LIA+DVA+RG+D++ + +V+NY+ P N E+YV
Sbjct: 272 KSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYV 331
Query: 462 HRIGRTARSTKTGISYTLFTPLNG---NKAQDLIDILNEAHQFVPDR---LLLLAAKNK- 514
HRIGRTAR+ +G++ +L +P ++L+DI Q++P L +A NK
Sbjct: 332 HRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELLDI-QLLQQWLPGYELDLTKIANSNKR 390
Query: 515 PITTRQWKRE 524
PI + +++
Sbjct: 391 PINKKNARKD 400
Score = 213 (80.0 bits), Expect = 2.8e-41, Sum P(3) = 2.8e-41
Identities = 46/104 (44%), Positives = 66/104 (63%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLI 193
ALVL PTRELAQQ+ + + + YGG S Q +L G +I++ATPGRL+
Sbjct: 79 ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLL 138
Query: 194 DFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ-MTRTR 236
D L + + +++ I LV DEADRMLDMGF+ +I +I Q + +T+
Sbjct: 139 DLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTK 182
Score = 142 (55.0 bits), Expect = 6.8e-34, Sum P(3) = 6.8e-34
Identities = 27/51 (52%), Positives = 39/51 (76%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
G +I++ATPGRL+D L + + +++ I LV DEADRMLDMGF+ +I +I Q
Sbjct: 126 GVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQ 176
Score = 92 (37.4 bits), Expect = 2.8e-41, Sum P(3) = 2.8e-41
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
S Y +PT IQ QS P+ L+ D++ AQTG+GKT + +
Sbjct: 23 SAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFAL 61
Score = 92 (37.4 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
+L L + + +++ I LV DEADRMLDMGF+ +I +I Q
Sbjct: 137 LLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQ 176
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 239 (89.2 bits), Expect = 2.8e-41, Sum P(3) = 2.8e-41
Identities = 50/130 (38%), Positives = 84/130 (64%)
Query: 402 RAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYV 461
+++ IHGDKSQ R++ L +F+ G + LIA+DVA+RG+D++ + +V+NY+ P N E+YV
Sbjct: 272 KSLAIHGDKSQGAREKALHEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYV 331
Query: 462 HRIGRTARSTKTGISYTLFTPLNG---NKAQDLIDILNEAHQFVPDR---LLLLAAKNK- 514
HRIGRTAR+ +G++ +L +P ++L+DI Q++P L +A NK
Sbjct: 332 HRIGRTARAGNSGLAVSLVSPGEEWLLTAIEELLDI-QLLQQWLPGYELDLTKIANSNKR 390
Query: 515 PITTRQWKRE 524
PI + +++
Sbjct: 391 PINKKNARKD 400
Score = 213 (80.0 bits), Expect = 2.8e-41, Sum P(3) = 2.8e-41
Identities = 46/104 (44%), Positives = 66/104 (63%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLI 193
ALVL PTRELAQQ+ + + + YGG S Q +L G +I++ATPGRL+
Sbjct: 79 ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVGVDILIATPGRLL 138
Query: 194 DFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ-MTRTR 236
D L + + +++ I LV DEADRMLDMGF+ +I +I Q + +T+
Sbjct: 139 DLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTK 182
Score = 142 (55.0 bits), Expect = 6.8e-34, Sum P(3) = 6.8e-34
Identities = 27/51 (52%), Positives = 39/51 (76%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
G +I++ATPGRL+D L + + +++ I LV DEADRMLDMGF+ +I +I Q
Sbjct: 126 GVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQ 176
Score = 92 (37.4 bits), Expect = 2.8e-41, Sum P(3) = 2.8e-41
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
S Y +PT IQ QS P+ L+ D++ AQTG+GKT + +
Sbjct: 23 SAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFAL 61
Score = 92 (37.4 bits), Expect = 1.0e-28, Sum P(3) = 1.0e-28
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
+L L + + +++ I LV DEADRMLDMGF+ +I +I Q
Sbjct: 137 LLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQ 176
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 222 (83.2 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
Identities = 47/106 (44%), Positives = 68/106 (64%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
IHG K Q +R + FR +VL+A+DVAS+GLD + I++V+N+D P++ ENYVHRIG
Sbjct: 471 IHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIG 530
Query: 466 RTARSTKTGISYTLFTPLNGNKA-QDLIDILNEAHQFVPDRLLLLA 510
RT RS + G++ T + DL +L EA Q +P+ L +LA
Sbjct: 531 RTGRSGRKGLATTFINKKSEMSVLSDLKQLLAEAGQELPEFLKMLA 576
Score = 218 (81.8 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
Identities = 71/225 (31%), Positives = 107/225 (47%)
Query: 112 YILPALYHIL----KMPKLEEGDGPIALVLAPTRELAQQI-QAVISIFSRTMR-----IR 161
++LP + L K+P + +GP L++ P+RELA+QI +I +F + +R
Sbjct: 244 FVLPLVMFCLEQEMKLPFMRS-EGPFGLIIVPSRELARQIFDLIIEMFDALGKAGLPEMR 302
Query: 162 HACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMG 221
GG Q +D+ G IVVATPGRL D L N+ YLVLDEADRMLDMG
Sbjct: 303 AGLCIGGVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVCRYLVLDEADRMLDMG 362
Query: 222 FEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGT------TNVNRITYLVLDEAD 275
FE +I+ I + + R + AT R I F NV R L+
Sbjct: 363 FEDEIKSIFYFFKAQ---RQTLLFSATMPRKIQFFAKSALVKPIVVNVGRAGAASLNVLQ 419
Query: 276 RMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERR---DTILHFL 317
+ + E ++ ++++ + P V L +E++ D I +L
Sbjct: 420 ELEFVRSENKLVRVLECLQKTSPKV---LIFAEKKVDVDNIYEYL 461
Score = 120 (47.3 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K G PT+IQ Q P+ LSGRD+IGIA TGSGKT++ +
Sbjct: 206 KQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVL 246
Score = 95 (38.5 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 323 NVNRITYLVLDEADRMLDMGFEPQIRKI 350
N+ YLVLDEADRMLDMGFE +I+ I
Sbjct: 343 NLEVCRYLVLDEADRMLDMGFEDEIKSI 370
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 381 (139.2 bits), Expect = 4.3e-41, Sum P(2) = 4.3e-41
Identities = 94/272 (34%), Positives = 147/272 (54%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R++ +G ++ ATPGRL D + G ++++ YLVLDEADRMLDMGFEP++RK++
Sbjct: 399 REVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLV----- 453
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRIT--YLVLDEADRMLDMGFEPQIRKIIQM 353
A P +P E R T++ F + ++ R+ +L +D L +G ++
Sbjct: 454 ASPGMPSK----EERQTLM-FSATYPEDIQRMAADFLKVDYI--FLAVGVVGGACSDVEQ 506
Query: 354 TRFNTCVFLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQ 412
T + + G ER VF+E + + + IHGD+ Q
Sbjct: 507 TVVQVDQYSKRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKI-STTSIHGDREQ 565
Query: 413 WNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTK 472
R++ L DFR G+ VL+A+ VA+RGLD+E +++VVN+D P + + YVHRIGRT R
Sbjct: 566 REREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGN 625
Query: 473 TGISYTLFTPLNGNK-AQDLIDILNEAHQFVP 503
TG + + F P + A+ L+ +L+ A Q VP
Sbjct: 626 TGRAVSFFNPESDTPLARSLVKVLSGAQQVVP 657
Score = 242 (90.2 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 50/123 (40%), Positives = 74/123 (60%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L + K E P A+++APTREL QI F+ +R +YG
Sbjct: 331 FLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPVVVYG 390
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
G + Y R++ +G ++ ATPGRL D + G ++++ YLVLDEADRMLDMGFEP++R
Sbjct: 391 GINTGYTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMR 450
Query: 228 KII 230
K++
Sbjct: 451 KLV 453
Score = 111 (44.1 bits), Expect = 4.3e-41, Sum P(2) = 4.3e-41
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 31 DVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
D S+ + K SGY KPT +Q PI +GRDL+ AQTGSGKT + +
Sbjct: 286 DSLSKNVSK-SGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLL 333
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 361 (132.1 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 93/277 (33%), Positives = 152/277 (54%)
Query: 242 AEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAH--PV 299
A +VVATPGRL+D + G N+ ++ YLVLDEADRML+ GFE I+ II T ++ +
Sbjct: 273 ANVVVATPGRLVDLINDGAINLGKVNYLVLDEADRMLEKGFEEDIKTIISNTSNSERQTL 332
Query: 300 VPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM-TRFNT 358
+ + + E R+ +F+ S ++T DR ++ +I +++++ +F+
Sbjct: 333 MFTATWPKEVRELANNFMNSPV----KVTV-----GDRD-ELSANKRITQVVEVINKFDK 382
Query: 359 CVFLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQ 417
L +L + + + +F + +++ + + + IHGD SQ R
Sbjct: 383 EKKLIQLLRKYNANESSDNKILIFALYKKEASRIENF-LKRNRFSVAAIHGDLSQQQRTA 441
Query: 418 TLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISY 477
L F+SG N+L+A+DVA+RGLD+ ++K V+N FP E+YVHRIGRT R+ G ++
Sbjct: 442 ALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAH 501
Query: 478 TLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNK 514
TLFT + + L +IL A+Q VP+ LL K
Sbjct: 502 TLFTEDEKHLSGALCNILRGANQPVPEELLKFGGHTK 538
Score = 215 (80.7 bits), Expect = 7.4e-23, Sum P(2) = 7.4e-23
Identities = 46/99 (46%), Positives = 62/99 (62%)
Query: 135 LVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLID 194
L ++PTRELA QI + + + +YGG SK Q R + + A +VVATPGRL+D
Sbjct: 227 LCISPTRELALQIYDNLIELTADSGVNCVAVYGGVSKDDQIRKI-KTANVVVATPGRLVD 285
Query: 195 FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 233
+ G N+ ++ YLVLDEADRML+ GFE I+ II T
Sbjct: 286 LINDGAINLGKVNYLVLDEADRMLEKGFEEDIKTIISNT 324
Score = 126 (49.4 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K S + KPT IQ+ SWP LSG+D+IG+A+TGSGKT + +
Sbjct: 169 KLSKFDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAFGV 209
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 377 (137.8 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 97/278 (34%), Positives = 154/278 (55%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R++ +G ++ TPGRL+D + G ++++ +LVLDEADRMLDMGFEP +R+++
Sbjct: 303 REIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMRRLV----- 357
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRIT--YLVLDEADRMLDM--GFEPQIRK-I 350
P +P E R T++ F + ++ R+ +L +D + + G + +
Sbjct: 358 GSPGMPSK----EERQTLM-FSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTDVEQTF 412
Query: 351 IQMTRFNTCVFLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGD 409
+Q+T+FN L +L G ER VF+E + + IHGD
Sbjct: 413 LQVTKFNKREQLLDLLR-----TIGSERTMVFVETKRQADFIAAF-LCQEKVPTTSIHGD 466
Query: 410 KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTAR 469
+ Q R++ L DFRSG VL+A+ VASRGLD+ D+++VVN+D P+ ++YVHRIGRT R
Sbjct: 467 REQREREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGR 526
Query: 470 STKTGISYTLFTP-LNGNKAQDLIDILNEAHQFVPDRL 506
TG + + + P ++ A+ L+ IL +A Q VP L
Sbjct: 527 CGNTGRAVSFYDPDVDSQLARSLVGILAKAQQEVPSWL 564
Score = 239 (89.2 bits), Expect = 6.5e-17, P = 6.5e-17
Identities = 48/123 (39%), Positives = 75/123 (60%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L ++ + E P A+++APTREL QI FS +R +YG
Sbjct: 235 FLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFGTCVRPVVVYG 294
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
G + YQ R++ +G ++ TPGRL+D + G ++++ +LVLDEADRMLDMGFEP +R
Sbjct: 295 GVNTGYQMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMGFEPDMR 354
Query: 228 KII 230
+++
Sbjct: 355 RLV 357
Score = 107 (42.7 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 26/60 (43%), Positives = 34/60 (56%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ--VARGSQCGRSNTSKE 98
SGY KPT +Q PI +GRDL+ AQTGSGKT + + Q +A G R + +E
Sbjct: 199 SGYVKPTPVQKYGLPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGVAASRFSEIQE 258
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 375 (137.1 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 99/298 (33%), Positives = 161/298 (54%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+++ L +GAEI+VATPGR+ID ++ TN+ R+T+LVLDEADRM MGFEPQ+R I
Sbjct: 385 QSKALEQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICN-- 442
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
H P +F + + I ++ RI L+EA++ + +Q
Sbjct: 443 -HVRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYV-FPNPLQK 500
Query: 354 TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQW 413
+ C + + L +L+ +V +++ ET + Y + +HGD Q
Sbjct: 501 WNWLLCHLVKF-LSEGSVLI-----FVTKKVD---AETVSNNLLIKEYNCLLLHGDMDQA 551
Query: 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT 473
+R++ + F+ ++L+A+DVA+RGLD+ I+ VVNYD + E + HRIGRT R+ +
Sbjct: 552 DRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRAGEK 611
Query: 474 GISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPITTRQWKREYWRRKSS 531
G +YTL T + A L+ L A Q VPD L+ LA K+ + ++K+ +R ++
Sbjct: 612 GNAYTLVTDKDKEFAGHLVRNLEGADQLVPDDLMELAMKSSWFRSSRFKQGKGKRPTN 669
Score = 327 (120.2 bits), Expect = 2.9e-34, Sum P(2) = 2.9e-34
Identities = 64/128 (50%), Positives = 84/128 (65%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+I P L H++ +L+ GDGPI L+LAPTREL+ QI F + + C YGG SK
Sbjct: 323 FIWPMLMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNLNVVCCYGGGSK 382
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q++ L +GAEI+VATPGR+ID ++ TN+ R+T+LVLDEADRM MGFEPQ+R I
Sbjct: 383 WEQSKALEQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICN 442
Query: 232 MTRTRDLC 239
R C
Sbjct: 443 HVRPDRQC 450
Score = 117 (46.2 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
+ + Y +PT IQAQ+ P LSGRD+IGIA+TGSGKT
Sbjct: 285 RKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKT 320
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 375 (137.1 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 106/284 (37%), Positives = 151/284 (53%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 369 QAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS-- 426
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
H P LF + R I + R+ + EA+ D+ QI +I+
Sbjct: 427 -HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANE--DV---TQIVEILHS 480
Query: 354 --TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHN--GTETKHYGVSSSLYRAMGIHGD 409
+++N +L L F + +V + N K G + L +HGD
Sbjct: 481 GPSKWN---WLTRRLVE-FTSSGSVLLFVTKKANAEELANNLKQEGHNLGL-----LHGD 531
Query: 410 KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTAR 469
Q R++ + DF+ I VL+A+DVA+RGLD+ IK V+NYD + + + HRIGRT R
Sbjct: 532 MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR 591
Query: 470 STKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
+ + G++YTL TP + N A DL+ L A+Q V LL LA +N
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQN 635
Score = 322 (118.4 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
Identities = 64/123 (52%), Positives = 80/123 (65%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+I P L HI+ +LE GDGPIA+++ PTREL QQI A F + +R +YGG S
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 367 WEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 232 MTR 234
R
Sbjct: 427 HVR 429
Score = 119 (46.9 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
+ S Y +PT IQ Q P+ LSGRD+IGIA+TGSGKT
Sbjct: 269 RKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKT 304
Score = 51 (23.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 22/111 (19%), Positives = 50/111 (45%)
Query: 390 ETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV--LIASDVASRGLDVEDIKY 447
E K +G + +L R++ ++G S W + + L++ + + V + +++ + Y
Sbjct: 345 ECKRFGKAYNL-RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSY 403
Query: 448 VVNYDFPDNTEN--YVHRIGRTARSTKTGISYTLFTPLNGNKAQDLI-DIL 495
+V +D D + + +++ A + LF+ K + L DIL
Sbjct: 404 LV-FDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDIL 453
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 375 (137.1 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 106/284 (37%), Positives = 151/284 (53%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 369 QAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS-- 426
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
H P LF + R I + R+ + EA+ D+ QI +I+
Sbjct: 427 -HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANE--DV---TQIVEILHS 480
Query: 354 --TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHN--GTETKHYGVSSSLYRAMGIHGD 409
+++N +L L F + +V + N K G + L +HGD
Sbjct: 481 GPSKWN---WLTRRLVE-FTSSGSVLLFVTKKANAEELANNLKQEGHNLGL-----LHGD 531
Query: 410 KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTAR 469
Q R++ + DF+ I VL+A+DVA+RGLD+ IK V+NYD + + + HRIGRT R
Sbjct: 532 MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR 591
Query: 470 STKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
+ + G++YTL TP + N A DL+ L A+Q V LL LA +N
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQN 635
Score = 322 (118.4 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
Identities = 64/123 (52%), Positives = 80/123 (65%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+I P L HI+ +LE GDGPIA+++ PTREL QQI A F + +R +YGG S
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 367 WEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 232 MTR 234
R
Sbjct: 427 HVR 429
Score = 119 (46.9 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
+ S Y +PT IQ Q P+ LSGRD+IGIA+TGSGKT
Sbjct: 269 RKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKT 304
Score = 51 (23.0 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 22/111 (19%), Positives = 50/111 (45%)
Query: 390 ETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV--LIASDVASRGLDVEDIKY 447
E K +G + +L R++ ++G S W + + L++ + + V + +++ + Y
Sbjct: 345 ECKRFGKAYNL-RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSY 403
Query: 448 VVNYDFPDNTEN--YVHRIGRTARSTKTGISYTLFTPLNGNKAQDLI-DIL 495
+V +D D + + +++ A + LF+ K + L DIL
Sbjct: 404 LV-FDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDIL 453
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 375 (137.1 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 106/284 (37%), Positives = 151/284 (53%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 369 QAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS-- 426
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
H P LF + R I + R+ + EA+ D+ QI +I+
Sbjct: 427 -HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANE--DV---TQIVEILHS 480
Query: 354 --TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHN--GTETKHYGVSSSLYRAMGIHGD 409
+++N +L L F + +V + N K G + L +HGD
Sbjct: 481 GPSKWN---WLTRRLVE-FTSSGSVLLFVTKKANAEELANNLKQEGHNLGL-----LHGD 531
Query: 410 KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTAR 469
Q R++ + DF+ I VL+A+DVA+RGLD+ IK V+NYD + + + HRIGRT R
Sbjct: 532 MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR 591
Query: 470 STKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
+ + G++YTL TP + N A DL+ L A+Q V LL LA +N
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQN 635
Score = 322 (118.4 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 64/123 (52%), Positives = 80/123 (65%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+I P L HI+ +LE GDGPIA+++ PTREL QQI A F + +R +YGG S
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 367 WEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 232 MTR 234
R
Sbjct: 427 HVR 429
Score = 119 (46.9 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
+ S Y +PT IQ Q P+ LSGRD+IGIA+TGSGKT
Sbjct: 269 RKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKT 304
Score = 51 (23.0 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 22/111 (19%), Positives = 50/111 (45%)
Query: 390 ETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV--LIASDVASRGLDVEDIKY 447
E K +G + +L R++ ++G S W + + L++ + + V + +++ + Y
Sbjct: 345 ECKRFGKAYNL-RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSY 403
Query: 448 VVNYDFPDNTEN--YVHRIGRTARSTKTGISYTLFTPLNGNKAQDLI-DIL 495
+V +D D + + +++ A + LF+ K + L DIL
Sbjct: 404 LV-FDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDIL 453
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 375 (137.1 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 106/284 (37%), Positives = 151/284 (53%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 369 QAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS-- 426
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
H P LF + R I + R+ + EA+ D+ QI +I+
Sbjct: 427 -HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANE--DV---TQIVEILHS 480
Query: 354 --TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHN--GTETKHYGVSSSLYRAMGIHGD 409
+++N +L L F + +V + N K G + L +HGD
Sbjct: 481 GPSKWN---WLTRRLVE-FTSSGSVLLFVTKKANAEELANNLKQEGHNLGL-----LHGD 531
Query: 410 KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTAR 469
Q R++ + DF+ I VL+A+DVA+RGLD+ IK V+NYD + + + HRIGRT R
Sbjct: 532 MDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR 591
Query: 470 STKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
+ + G++YTL TP + N A DL+ L A+Q V LL LA +N
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQN 635
Score = 319 (117.4 bits), Expect = 3.3e-33, Sum P(2) = 3.3e-33
Identities = 64/123 (52%), Positives = 80/123 (65%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+I P L HI+ +LE GDGPIA+++ PTREL QQI A F + +R +YGG S
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGGGSM 366
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 367 WEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 232 MTR 234
R
Sbjct: 427 HVR 429
Score = 119 (46.9 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
+ S Y +PT IQ Q P+ LSGRD+IGIA+TGSGKT
Sbjct: 269 RKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKT 304
Score = 50 (22.7 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 22/111 (19%), Positives = 50/111 (45%)
Query: 390 ETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV--LIASDVASRGLDVEDIKY 447
E K +G + +L R++ ++G S W + + L++ + + V + +++ + Y
Sbjct: 345 EGKRFGKAYNL-RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSY 403
Query: 448 VVNYDFPDNTEN--YVHRIGRTARSTKTGISYTLFTPLNGNKAQDLI-DIL 495
+V +D D + + +++ A + LF+ K + L DIL
Sbjct: 404 LV-FDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDIL 453
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 213 (80.0 bits), Expect = 3.3e-40, Sum P(3) = 3.3e-40
Identities = 62/182 (34%), Positives = 91/182 (50%)
Query: 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPG 190
G LVLAPTRELA QI + + +R + GG Q R L RGA I+VATPG
Sbjct: 80 GTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAHILVATPG 139
Query: 191 RLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM--TRTRDLCRGAEIVVAT 248
RLID +E +++++ L+LDEAD+MLD+GF +R I + ++ + L A + A
Sbjct: 140 RLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTLFFSATMPKAV 199
Query: 249 PGRLIDFLESGT--------TNVNRITYLVL-----DEADRMLDMGFEPQIRKIIQMTRH 295
FL + T RI V ++A +++ +P++R I TR
Sbjct: 200 ESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEKIRDPELRSAIVFTRT 259
Query: 296 AH 297
H
Sbjct: 260 KH 261
Score = 211 (79.3 bits), Expect = 3.3e-40, Sum P(3) = 3.3e-40
Identities = 42/94 (44%), Positives = 65/94 (69%)
Query: 389 TETKHY--GVSSSLYRA----MGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDV 442
T TKH GV L +A + IHG+KSQ R++ L F++G + +L+A+D+A+RG+ V
Sbjct: 257 TRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIAARGIHV 316
Query: 443 EDIKYVVNYDFPDNTENYVHRIGRTARSTKTGIS 476
+ + +V+NYD PD E +VHRIGRTAR+ +G++
Sbjct: 317 DALTHVINYDLPDVPEQFVHRIGRTARAGNSGVA 350
Score = 119 (46.9 bits), Expect = 3.3e-40, Sum P(3) = 3.3e-40
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 27 LIASDVASRGL-GK------NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+I SD S GL G+ +GY PT IQ Q+ P+ + GRD++G+AQTG+GKTL+
Sbjct: 4 VIMSDFQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLA 60
Score = 79 (32.9 bits), Expect = 2.8e-26, Sum P(3) = 2.8e-26
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
++ +E +++++ L+LDEAD+MLD+GF +R I
Sbjct: 141 LIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAI 178
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 374 (136.7 bits), Expect = 3.3e-40, Sum P(2) = 3.3e-40
Identities = 106/284 (37%), Positives = 151/284 (53%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 369 QAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS-- 426
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
H P LF + R I + R+ + EA+ D+ QI +I+
Sbjct: 427 -HVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANE--DV---TQIVEILHS 480
Query: 354 --TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHN--GTETKHYGVSSSLYRAMGIHGD 409
+++N +L L F + +V + N K G + L +HGD
Sbjct: 481 GPSKWN---WLTRRLVE-FTSSGSVLLFVTKKANAEELANNLKQEGHNLGL-----LHGD 531
Query: 410 KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTAR 469
Q R++ + DF+ I VL+A+DVA+RGLD+ IK V+NYD + + + HRIGRT R
Sbjct: 532 MDQSERNKVILDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGR 591
Query: 470 STKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
+ + G++YTL TP + N A DL+ L A+Q V LL LA +N
Sbjct: 592 AGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQN 635
Score = 322 (118.4 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
Identities = 64/123 (52%), Positives = 80/123 (65%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+I P L HI+ +LE GDGPIA+++ PTREL QQI A F + +R +YGG S
Sbjct: 307 FIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSM 366
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L GAEIVV TPGRLID ++ TN+ R++YLV DEADRM DMGFE Q+R I
Sbjct: 367 WEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIAS 426
Query: 232 MTR 234
R
Sbjct: 427 HVR 429
Score = 119 (46.9 bits), Expect = 3.3e-40, Sum P(2) = 3.3e-40
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
+ S Y +PT IQ Q P+ LSGRD+IGIA+TGSGKT
Sbjct: 269 RKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKT 304
Score = 51 (23.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 22/111 (19%), Positives = 50/111 (45%)
Query: 390 ETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV--LIASDVASRGLDVEDIKY 447
E K +G + +L R++ ++G S W + + L++ + + V + +++ + Y
Sbjct: 345 ECKRFGKAYNL-RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSY 403
Query: 448 VVNYDFPDNTEN--YVHRIGRTARSTKTGISYTLFTPLNGNKAQDLI-DIL 495
+V +D D + + +++ A + LF+ K + L DIL
Sbjct: 404 LV-FDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDIL 453
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 222 (83.2 bits), Expect = 9.4e-40, Sum P(3) = 9.4e-40
Identities = 47/103 (45%), Positives = 65/103 (63%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQTRDLCRGAEIVVATPG 190
P ALVL PTRELA Q+ + + ++ +YGG+S Q L RGA++VV TPG
Sbjct: 82 PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVVGTPG 141
Query: 191 RLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 233
R+ID LE T +++R+ +LVLDEAD ML MGF + +I+ T
Sbjct: 142 RMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSET 184
Score = 212 (79.7 bits), Expect = 9.4e-40, Sum P(3) = 9.4e-40
Identities = 40/82 (48%), Positives = 58/82 (70%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ A I GD Q R++T+ R G I++L+A+DVA+RGLDVE I +V+NYD P +TE+Y
Sbjct: 275 FSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESY 334
Query: 461 VHRIGRTARSTKTGISYTLFTP 482
VHRIGRT R+ ++G + +P
Sbjct: 335 VHRIGRTGRAGRSGAALIFVSP 356
Score = 158 (60.7 bits), Expect = 5.7e-33, Sum P(3) = 5.7e-33
Identities = 30/56 (53%), Positives = 41/56 (73%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
L RGA++VV TPGR+ID LE T +++R+ +LVLDEAD ML MGF + +I+ T
Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSET 184
Score = 109 (43.4 bits), Expect = 9.4e-40, Sum P(3) = 9.4e-40
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
R +G + GY PT+IQA + P ++G D++G+AQTG+GKT + I
Sbjct: 26 RAIG-DVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAI 69
Score = 96 (38.9 bits), Expect = 1.5e-26, Sum P(3) = 1.5e-26
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 354
++ LE T +++R+ +LVLDEAD ML MGF + +I+ T
Sbjct: 143 MIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSET 184
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 294 (108.6 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 63/129 (48%), Positives = 83/129 (64%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS-RTMRIRHACLYGG 168
+ Y+LP L HI ++ GPI L+L+PTRELA QI+ I F+ R +R C YGG
Sbjct: 346 LSYVLPMLRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGG 405
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFL--ESGTT-NVNRITYLVLDEADRMLDMGFEPQ 225
+S Q +L +G EI+V TPGR+ID L SG N+ R T++VLDEADRM D+GFEPQ
Sbjct: 406 SSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQ 465
Query: 226 IRKIIQMTR 234
+ KI+ R
Sbjct: 466 VNKILTQIR 474
Score = 208 (78.3 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 49/140 (35%), Positives = 80/140 (57%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRS--GYINVLIASDVAS 437
VF E N + + S+ Y A+ IHG K Q +R +++F S IN+LIA+ +A+
Sbjct: 559 VFTE-KQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAA 617
Query: 438 RGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497
RGLDV ++ V+N+D P++ E+YVHR+GRT R+ G + T + + +L+ L
Sbjct: 618 RGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKALKL 677
Query: 498 AHQFVPDRLLLLAAKNKPIT 517
+H + +L +A NK +T
Sbjct: 678 SHSDIDPKLEEIA--NKFVT 695
Score = 172 (65.6 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 37/80 (46%), Positives = 50/80 (62%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESGTT-NVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L +G EI+V TPGR+ID L SG N+ R T++VLDEADRM D+GFEPQ+ KI+
Sbjct: 414 ELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQI 473
Query: 294 RHAHPVVPVSLFISERRDTI 313
R V S + +T+
Sbjct: 474 RPDRQTVLFSATFPRKMETL 493
Score = 123 (48.4 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSN 94
+ KP++IQ+Q+ P LSGRD+IGIA+TGSGKTLS + + + Q + N
Sbjct: 314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDN 365
Score = 113 (44.8 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 323 NVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
N+ R T++VLDEADRM D+GFEPQ+ KI+ R
Sbjct: 442 NLKRCTFVVLDEADRMFDLGFEPQVNKILTQIR 474
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 294 (108.6 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 63/129 (48%), Positives = 83/129 (64%)
Query: 110 VKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFS-RTMRIRHACLYGG 168
+ Y+LP L HI ++ GPI L+L+PTRELA QI+ I F+ R +R C YGG
Sbjct: 346 LSYVLPMLRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGG 405
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFL--ESGTT-NVNRITYLVLDEADRMLDMGFEPQ 225
+S Q +L +G EI+V TPGR+ID L SG N+ R T++VLDEADRM D+GFEPQ
Sbjct: 406 SSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQ 465
Query: 226 IRKIIQMTR 234
+ KI+ R
Sbjct: 466 VNKILTQIR 474
Score = 208 (78.3 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 49/140 (35%), Positives = 80/140 (57%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRS--GYINVLIASDVAS 437
VF E N + + S+ Y A+ IHG K Q +R +++F S IN+LIA+ +A+
Sbjct: 559 VFTE-KQNDADELVANLLSNKYPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAA 617
Query: 438 RGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE 497
RGLDV ++ V+N+D P++ E+YVHR+GRT R+ G + T + + +L+ L
Sbjct: 618 RGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKALKL 677
Query: 498 AHQFVPDRLLLLAAKNKPIT 517
+H + +L +A NK +T
Sbjct: 678 SHSDIDPKLEEIA--NKFVT 695
Score = 172 (65.6 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 37/80 (46%), Positives = 50/80 (62%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESGTT-NVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+L +G EI+V TPGR+ID L SG N+ R T++VLDEADRM D+GFEPQ+ KI+
Sbjct: 414 ELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQI 473
Query: 294 RHAHPVVPVSLFISERRDTI 313
R V S + +T+
Sbjct: 474 RPDRQTVLFSATFPRKMETL 493
Score = 123 (48.4 bits), Expect = 2.0e-34, Sum P(3) = 2.0e-34
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSN 94
+ KP++IQ+Q+ P LSGRD+IGIA+TGSGKTLS + + + Q + N
Sbjct: 314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDN 365
Score = 113 (44.8 bits), Expect = 2.6e-28, Sum P(3) = 2.6e-28
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 323 NVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
N+ R T++VLDEADRM D+GFEPQ+ KI+ R
Sbjct: 442 NLKRCTFVVLDEADRMFDLGFEPQVNKILTQIR 474
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 341 (125.1 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 93/283 (32%), Positives = 151/283 (53%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAH 297
L RG +I+VATPGRL+D + G N++R+ + VLDEADRMLDMGF P IR+I+++
Sbjct: 133 LRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKL----- 187
Query: 298 PVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFN 357
+ E R +L F + + + +T D++L P + I++ R N
Sbjct: 188 --------LPESRQNLL-FSATFSKEIKELT-------DKLLH---SPAL---IEVARRN 225
Query: 358 TCVF-LGYVLY--------FWFILVAGIERW----VFMEINHNGTETKHYGVSSSLYRAM 404
T + +V++ + G + W VF H S L A
Sbjct: 226 TAAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSA- 284
Query: 405 GIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRI 464
IHG+KSQ R + L F+ G I VL+A+DVA+RGLD++ + +V+N++ PD ++YVHR+
Sbjct: 285 AIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRV 344
Query: 465 GRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLL 507
GRT R++ G++ +L ++G++ + L DI +P ++
Sbjct: 345 GRTGRASNDGVAISL---VSGDEVRLLRDIEKLLQSKMPQEVI 384
Score = 257 (95.5 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 52/124 (41%), Positives = 79/124 (63%)
Query: 112 YILPALYHI-LKMPKLEEGDGPI--ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 168
+ LP L + + P L+ P+ AL+L PTRELA Q+ + + + + ++ ++GG
Sbjct: 64 FTLPLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGG 123
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
S Q L RG +I+VATPGRL+D + G N++R+ + VLDEADRMLDMGF P IR+
Sbjct: 124 VSIKPQINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRR 183
Query: 229 IIQM 232
I+++
Sbjct: 184 ILKL 187
Score = 103 (41.3 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 19 FRSGYIN--VLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
FRS +++ VL S R + + GY +PT +Q Q+ P+ L RD++ AQTG+GKT
Sbjct: 5 FRSYFMSFEVLGLSAELLRAI-REQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAG 63
Query: 77 LTI 79
T+
Sbjct: 64 FTL 66
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 341 (125.1 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 93/283 (32%), Positives = 151/283 (53%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAH 297
L RG +I+VATPGRL+D + G N++R+ + VLDEADRMLDMGF P IR+I+++
Sbjct: 133 LRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKL----- 187
Query: 298 PVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFN 357
+ E R +L F + + + +T D++L P + I++ R N
Sbjct: 188 --------LPESRQNLL-FSATFSKEIKELT-------DKLLH---SPAL---IEVARRN 225
Query: 358 TCVF-LGYVLY--------FWFILVAGIERW----VFMEINHNGTETKHYGVSSSLYRAM 404
T + +V++ + G + W VF H S L A
Sbjct: 226 TAAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSA- 284
Query: 405 GIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRI 464
IHG+KSQ R + L F+ G I VL+A+DVA+RGLD++ + +V+N++ PD ++YVHR+
Sbjct: 285 AIHGNKSQAARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRV 344
Query: 465 GRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLL 507
GRT R++ G++ +L ++G++ + L DI +P ++
Sbjct: 345 GRTGRASNDGVAISL---VSGDEVRLLRDIEKLLQSKMPQEVI 384
Score = 257 (95.5 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
Identities = 52/124 (41%), Positives = 79/124 (63%)
Query: 112 YILPALYHI-LKMPKLEEGDGPI--ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGG 168
+ LP L + + P L+ P+ AL+L PTRELA Q+ + + + + ++ ++GG
Sbjct: 64 FTLPLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGG 123
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
S Q L RG +I+VATPGRL+D + G N++R+ + VLDEADRMLDMGF P IR+
Sbjct: 124 VSIKPQINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRR 183
Query: 229 IIQM 232
I+++
Sbjct: 184 ILKL 187
Score = 103 (41.3 bits), Expect = 1.7e-39, Sum P(2) = 1.7e-39
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 19 FRSGYIN--VLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
FRS +++ VL S R + + GY +PT +Q Q+ P+ L RD++ AQTG+GKT
Sbjct: 5 FRSYFMSFEVLGLSAELLRAI-REQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAG 63
Query: 77 LTI 79
T+
Sbjct: 64 FTL 66
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 369 (135.0 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 95/269 (35%), Positives = 150/269 (55%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R + +G I+ ATPGRL+D +E G ++ + YLVLDEADRMLDMGF ++K+I
Sbjct: 289 RQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLI----- 343
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRIT--YLVLDEADRMLD--MGFEPQIRK-I 350
++P +P +RR T++ F + V R+ +L D ++ G +++ I
Sbjct: 344 SYPEMPSK----DRRQTLM-FSATFPEEVQRLAGEFLKTDYIFLVIGNTCGACSDVQQNI 398
Query: 351 IQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDK 410
+Q+ R + L +L G VF++ + +L + IHGD+
Sbjct: 399 LQVPRLSKRDKLIEILQS----TGGERTMVFVDTKKKADYLAAFLCQENL-PSTSIHGDR 453
Query: 411 SQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARS 470
Q R+ LRDFRSG +L+A+ VASRGLD+E++++V+N+D P+ E+YVHRIGRT R
Sbjct: 454 EQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRC 513
Query: 471 TKTGISYTLFTPLN-GNKAQDLIDILNEA 498
TG + + F + G+ Q L+ +L+EA
Sbjct: 514 GNTGKAVSFFDDQSDGHLVQSLLKVLSEA 542
Score = 218 (81.8 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 48/123 (39%), Positives = 71/123 (57%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP + ++K ++ P +++APTREL QI F IR +YG
Sbjct: 221 FLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYG 280
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + R + +G I+ ATPGRL+D +E G ++ + YLVLDEADRMLDMGF ++
Sbjct: 281 GTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMK 340
Query: 228 KII 230
K+I
Sbjct: 341 KLI 343
Score = 99 (39.9 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 27 LIASDVAS--RGLGKN---SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
L+A + A+ + L KN +GY K T +Q S P+ +GRDL+ AQTGSGKT + +
Sbjct: 166 LLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLL 223
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 329 (120.9 bits), Expect = 5.4e-39, Sum P(2) = 5.4e-39
Identities = 94/266 (35%), Positives = 142/266 (53%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ + L GAE+VVA PGRL+D + GT +++R+ LVLDEAD+M DMGF P IR+++
Sbjct: 113 QVQKLKAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVL--- 169
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
+H P RR T+L S T ++ I L D ++D P +Q+
Sbjct: 170 KHLPP----------RRQTLLF---SATMPID-IRTLA---QDILVD----PVT---VQV 205
Query: 354 TRFNTCVFLGYVLYFWFILVAGIERWVFMEI-NHNGTE-------TKHYG--VSSSL--- 400
V + + LY + ++ + +E+ H TE TKH + L
Sbjct: 206 GTVAPAVTVAHALY---PVEQHLKTPLLLELLRHTDTESVLIFTRTKHRAKRLGEQLEKA 262
Query: 401 -YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTEN 459
YRA + G+ SQ R L FR G +L+A+D+A+RG+DV + +V+NYD PD E
Sbjct: 263 GYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGIDVSQVSHVINYDIPDTAEA 322
Query: 460 YVHRIGRTARSTKTGISYTLFTPLNG 485
Y+HRIGRT R+ ++G ++TL T +G
Sbjct: 323 YIHRIGRTGRAARSGDAFTLVTSDDG 348
Score = 250 (93.1 bits), Expect = 5.0e-26, Sum P(2) = 5.0e-26
Identities = 52/109 (47%), Positives = 74/109 (67%)
Query: 125 KLEEGD-GPI-ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGA 182
+L++G+ G + ALV+APTRELA+QI R R+R +YGG Q + L GA
Sbjct: 62 RLQQGERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGA 121
Query: 183 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
E+VVA PGRL+D + GT +++R+ LVLDEAD+M DMGF P IR++++
Sbjct: 122 EVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLK 170
Score = 112 (44.5 bits), Expect = 5.4e-39, Sum P(2) = 5.4e-39
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY PT IQAQ+ P ++GRD++G+AQTG+GKT + +
Sbjct: 19 AGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFAL 57
>DICTYBASE|DDB_G0292010 [details] [associations]
symbol:DDB_G0292010 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292010 GO:GO:0005524
EMBL:AAFI02000187 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
ProtClustDB:CLSZ2846571 RefSeq:XP_629765.1
ProteinModelPortal:Q54DV7 EnsemblProtists:DDB0184159 GeneID:8628441
KEGG:ddi:DDB_G0292010 InParanoid:Q54DV7 OMA:VESSCKP Uniprot:Q54DV7
Length = 777
Score = 250 (93.1 bits), Expect = 5.7e-39, Sum P(2) = 5.7e-39
Identities = 65/194 (33%), Positives = 100/194 (51%)
Query: 46 PTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNN 105
PT +Q+Q WP LSG+D++ IAQTGSGKTL + + + R + +
Sbjct: 312 PTPVQSQCWPGILSGQDILSIAQTGSGKTLGYLLP--AIPNILEHLRQRKIRRQQMTMQE 369
Query: 106 NVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACL 165
+ + K +LK + GP+ L++ PTRELA+Q+++ I +
Sbjct: 370 KLENKKKS-----KLLKNTNM----GPMVLIIVPTRELAKQVESSCKPLRSKFNIHSIAI 420
Query: 166 YGGTSKMYQTRDLC--RGAEIVVATPGRLIDFLESGTTNVNR---ITYLVLDEADRMLDM 220
YGG Q +D+ EI++ATPGRL+D ++ V + L+LDEADRML +
Sbjct: 421 YGGVDANEQ-KDILGQEHNEIIIATPGRLVDLIQRSKEVVGLLGGVGMLILDEADRMLQL 479
Query: 221 GFEPQIRKIIQMTR 234
GF Q++KI + R
Sbjct: 480 GFGDQLQKISEQIR 493
Score = 247 (92.0 bits), Expect = 5.7e-39, Sum P(2) = 5.7e-39
Identities = 50/124 (40%), Positives = 76/124 (61%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVE-DIKYVVNYDFPDNTEN 459
Y+ IHGD Q+ RD + +F+SG I++L+A+D+ RG+ + ++++V+NYDFP + E
Sbjct: 607 YKCGAIHGDMKQFERDSVIDNFKSGKISILVATDILGRGIHIGGNLRFVINYDFPSSLEQ 666
Query: 460 YVHRIGRTARSTKTGISYTLFT--PLNGNKAQDLIDILNEAHQFVPDRLLLLAAKNKPIT 517
YVHR+GRT R G + TLFT P N A+ LI IL E Q + L+ LA I
Sbjct: 667 YVHRVGRTGRQGNKGHALTLFTDTPQNTPMARGLIKILEECKQQISPDLIKLADNFNGIV 726
Query: 518 TRQW 521
+ ++
Sbjct: 727 SNEF 730
Score = 120 (47.3 bits), Expect = 2.5e-25, Sum P(2) = 2.5e-25
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 243 EIVVATPGRLIDFLESGTTNVNR---ITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
EI++ATPGRL+D ++ V + L+LDEADRML +GF Q++KI + R
Sbjct: 439 EIIIATPGRLVDLIQRSKEVVGLLGGVGMLILDEADRMLQLGFGDQLQKISEQIR 493
Score = 78 (32.5 bits), Expect = 6.2e-21, Sum P(2) = 6.2e-21
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 330 LVLDEADRMLDMGFEPQIRKIIQMTR 355
L+LDEADRML +GF Q++KI + R
Sbjct: 468 LILDEADRMLQLGFGDQLQKISEQIR 493
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 232 (86.7 bits), Expect = 6.6e-39, Sum P(3) = 6.6e-39
Identities = 47/106 (44%), Positives = 70/106 (66%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A IHGD Q R +TL+ FR G + +L+ASDVA+RGLD+ D+ +V N+ P E+YVH
Sbjct: 275 AAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVH 334
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILN-EAHQFVPDRLL 507
RIGRT R+ +TG SYT+ TP + ++ ++ + +F+P+ LL
Sbjct: 335 RIGRTGRAGRTGESYTVVTPADDKSWGFVVKMIKKDVPEFMPEGLL 380
Score = 204 (76.9 bits), Expect = 6.6e-39, Sum P(3) = 6.6e-39
Identities = 43/98 (43%), Positives = 60/98 (61%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
P L+L PTRELA Q+ + + +++ A L GG S Q L RG ++++ATPGR
Sbjct: 76 PRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGVDVLIATPGR 135
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
L+D + G + + L++DEADRMLDMGF P I KI
Sbjct: 136 LMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKI 173
Score = 139 (54.0 bits), Expect = 3.7e-32, Sum P(3) = 3.7e-32
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 289
L RG ++++ATPGRL+D + G + + L++DEADRMLDMGF P I KI
Sbjct: 122 LQRGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKI 173
Score = 96 (38.9 bits), Expect = 6.6e-39, Sum P(3) = 6.6e-39
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
SGY PT IQ ++ P L G D+ G+AQTG+GKT + + Q
Sbjct: 22 SGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQ 64
Score = 84 (34.6 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 330 LVLDEADRMLDMGFEPQIRKI 350
L++DEADRMLDMGF P I KI
Sbjct: 153 LIIDEADRMLDMGFIPDIEKI 173
Score = 39 (18.8 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 292 MTRHAHPVVPV--SLFISERRDTILHF 316
+T+H H P+ L S R +T+ F
Sbjct: 268 LTKHGHDAAPIHGDLPQSVRSETLQRF 294
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 354 (129.7 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 96/259 (37%), Positives = 140/259 (54%)
Query: 237 DLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
DL RGAEIVV TPGR+ID L SG TN+ R+TYLVLDEADRM D GFEPQI K++
Sbjct: 423 DLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVNNI 482
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
R P + T+L F + ++ + VLD+ +L G I Q
Sbjct: 483 R------P-------DKQTVL-FSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQ- 527
Query: 354 TRFNTCVFLGYVLYFWFILVAGI--ERW---VFMEINHNGTETKHYGVSSSLYRAMGIHG 408
N + + + + + G+ E VF++ + + + +HG
Sbjct: 528 ---NAVICAEHQKFLKLLELLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHG 584
Query: 409 DKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTA 468
Q +RD ++ DF++G I VL+A+ VA+RGLDV+++ VVNYD P++ E+YVHR+GRT
Sbjct: 585 GIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTG 644
Query: 469 RSTKTGISYTLFTPLNGNK 487
R+ + G +YT P + K
Sbjct: 645 RAGRKGYAYTFVLPEHQEK 663
Score = 351 (128.6 bits), Expect = 4.3e-38, Sum P(2) = 4.3e-38
Identities = 72/126 (57%), Positives = 88/126 (69%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LP HIL P+LEEGDGPIA++LAPTRELA Q + F++ + ++ AC YGG
Sbjct: 358 FLLPMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGI 417
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFL--ESG-TTNVNRITYLVLDEADRMLDMGFEPQIRK 228
Q DL RGAEIVV TPGR+ID L SG TN+ R+TYLVLDEADRM D GFEPQI K
Sbjct: 418 SEQIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMK 477
Query: 229 IIQMTR 234
++ R
Sbjct: 478 VVNNIR 483
Score = 129 (50.5 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 26/41 (63%), Positives = 32/41 (78%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
K Y KPTSIQAQ+ P +SGRD+IGIA+TGSGKTL+ +
Sbjct: 320 KKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLL 360
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 370 (135.3 bits), Expect = 2.1e-38, Sum P(2) = 2.1e-38
Identities = 93/270 (34%), Positives = 141/270 (52%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R + +G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF P+++K+I
Sbjct: 411 RQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISC--- 467
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
P +P E+R T++ F + + R+ L + +G + +Q T
Sbjct: 468 --PGMPSK----EQRQTLM-FSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTI 520
Query: 356 FNTCVFLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414
+ + G ER VF+E + + IHGD+ Q
Sbjct: 521 LQVGQYSKREKLVEILRSIGDERTMVFVETKKKADFIATFLCQEKI-STTSIHGDREQRE 579
Query: 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
R+Q L DFR G VL+A+ VA+RGLD+E++++V+N+D P + YVHRIGRT R TG
Sbjct: 580 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 639
Query: 475 ISYTLFTPLNGNK-AQDLIDILNEAHQFVP 503
+ + F P + N AQ L+ +L++A Q VP
Sbjct: 640 RAISFFDPESDNHLAQPLVKVLSDAQQDVP 669
Score = 237 (88.5 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 50/123 (40%), Positives = 73/123 (59%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L H++ + +E P +++APTREL QI FS +R +YG
Sbjct: 343 FLLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYG 402
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT Y R + +G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF P+++
Sbjct: 403 GTQLGYSIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMK 462
Query: 228 KII 230
K+I
Sbjct: 463 KLI 465
Score = 102 (41.0 bits), Expect = 2.1e-38, Sum P(2) = 2.1e-38
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY K T +Q S PI L+GRDL+ AQTGSGKT + +
Sbjct: 307 AGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLL 345
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 217 (81.4 bits), Expect = 3.5e-38, Sum P(3) = 3.5e-38
Identities = 49/121 (40%), Positives = 71/121 (58%)
Query: 112 YILPALYHILKMPKLEEGDGPI-ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTS 170
+ LP L ++ + + I ALVL PTRELA Q+Q +++ IR YGG S
Sbjct: 55 FALPILQLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVS 114
Query: 171 KMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
Q G ++++ATPGRL+D L G N+N++ LV DEADRMLDMGF +I+ ++
Sbjct: 115 IEAQQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVL 174
Query: 231 Q 231
+
Sbjct: 175 K 175
Score = 216 (81.1 bits), Expect = 3.5e-38, Sum P(3) = 3.5e-38
Identities = 36/75 (48%), Positives = 58/75 (77%)
Query: 407 HGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGR 466
HGD SQ R++ L++F+ G + VL+A+DVA+RGLD+ +++YV+N++ P E+Y+HRIGR
Sbjct: 276 HGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGR 335
Query: 467 TARSTKTGISYTLFT 481
T R+ G++ TLF+
Sbjct: 336 TGRAGSAGLAITLFS 350
Score = 154 (59.3 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVV 300
G ++++ATPGRL+D L G N+N++ LV DEADRMLDMGF +I+ +++ +
Sbjct: 125 GIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTL 184
Query: 301 PVSLFISERRDTILHFLESGTTNVNRI 327
LF + D+I F ++ + RI
Sbjct: 185 ---LFSATLDDSIFSFSKNLLRDPKRI 208
Score = 102 (41.0 bits), Expect = 3.2e-26, Sum P(3) = 3.2e-26
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
+L L G N+N++ LV DEADRMLDMGF +I+ +++
Sbjct: 136 LLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLK 175
Score = 85 (35.0 bits), Expect = 3.5e-38, Sum P(3) = 3.5e-38
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQV 84
GY +PT IQ ++ P L+ +D++ AQTG+GKT + + Q+
Sbjct: 20 GYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQL 62
Score = 42 (19.8 bits), Expect = 3.5e-20, Sum P(3) = 3.5e-20
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 330 LVLDEADRMLDM--------GFEPQIRKIIQMTRFNT 358
L+L+E + +LD GFEP K++ R N+
Sbjct: 355 LLLEEVETLLDKRLPQQWYPGFEPDFNKMLPEPRRNS 391
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 217 (81.4 bits), Expect = 3.5e-38, Sum P(3) = 3.5e-38
Identities = 49/121 (40%), Positives = 71/121 (58%)
Query: 112 YILPALYHILKMPKLEEGDGPI-ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTS 170
+ LP L ++ + + I ALVL PTRELA Q+Q +++ IR YGG S
Sbjct: 55 FALPILQLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVS 114
Query: 171 KMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
Q G ++++ATPGRL+D L G N+N++ LV DEADRMLDMGF +I+ ++
Sbjct: 115 IEAQQAVFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVL 174
Query: 231 Q 231
+
Sbjct: 175 K 175
Score = 216 (81.1 bits), Expect = 3.5e-38, Sum P(3) = 3.5e-38
Identities = 36/75 (48%), Positives = 58/75 (77%)
Query: 407 HGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGR 466
HGD SQ R++ L++F+ G + VL+A+DVA+RGLD+ +++YV+N++ P E+Y+HRIGR
Sbjct: 276 HGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGR 335
Query: 467 TARSTKTGISYTLFT 481
T R+ G++ TLF+
Sbjct: 336 TGRAGSAGLAITLFS 350
Score = 154 (59.3 bits), Expect = 1.3e-31, Sum P(3) = 1.3e-31
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVV 300
G ++++ATPGRL+D L G N+N++ LV DEADRMLDMGF +I+ +++ +
Sbjct: 125 GIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTL 184
Query: 301 PVSLFISERRDTILHFLESGTTNVNRI 327
LF + D+I F ++ + RI
Sbjct: 185 ---LFSATLDDSIFSFSKNLLRDPKRI 208
Score = 102 (41.0 bits), Expect = 3.2e-26, Sum P(3) = 3.2e-26
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
+L L G N+N++ LV DEADRMLDMGF +I+ +++
Sbjct: 136 LLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLK 175
Score = 85 (35.0 bits), Expect = 3.5e-38, Sum P(3) = 3.5e-38
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQV 84
GY +PT IQ ++ P L+ +D++ AQTG+GKT + + Q+
Sbjct: 20 GYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQL 62
Score = 42 (19.8 bits), Expect = 3.5e-20, Sum P(3) = 3.5e-20
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 330 LVLDEADRMLDM--------GFEPQIRKIIQMTRFNT 358
L+L+E + +LD GFEP K++ R N+
Sbjct: 355 LLLEEVETLLDKRLPQQWYPGFEPDFNKMLPEPRRNS 391
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 367 (134.2 bits), Expect = 4.4e-38, Sum P(2) = 4.4e-38
Identities = 93/270 (34%), Positives = 142/270 (52%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R + +G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF P+++K+I
Sbjct: 383 RQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISC--- 439
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
P +P E+R T+L F + + R+ L + + +G + +Q T
Sbjct: 440 --PGMPSK----EQRQTLL-FSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTI 492
Query: 356 FNTCVFLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414
+ + G ER VF+E + + IHGD+ Q
Sbjct: 493 LQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKI-STTSIHGDREQRE 551
Query: 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
R+Q L DFR G VL+A+ VA+RGLD+E++++V+N+D P + YVHRIGRT R TG
Sbjct: 552 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 611
Query: 475 ISYTLF-TPLNGNKAQDLIDILNEAHQFVP 503
+ + F T + + AQ L+ +L++A Q VP
Sbjct: 612 RAISFFDTDSDNHLAQPLVKVLSDAQQDVP 641
Score = 235 (87.8 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 49/123 (39%), Positives = 74/123 (60%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L H+++ + +E P +++APTREL QI FS +R +YG
Sbjct: 315 FLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYG 374
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + R + +G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF P+++
Sbjct: 375 GTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMK 434
Query: 228 KII 230
K+I
Sbjct: 435 KLI 437
Score = 102 (41.0 bits), Expect = 4.4e-38, Sum P(2) = 4.4e-38
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY K T +Q S PI L+GRDL+ AQTGSGKT + +
Sbjct: 279 AGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLL 317
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 212 (79.7 bits), Expect = 6.9e-38, Sum P(3) = 6.9e-38
Identities = 43/101 (42%), Positives = 66/101 (65%)
Query: 380 VFMEINHNGTE-TKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASR 438
VF + H + TKH + + A IHG+KSQ R + L F+ G + +L+A+D+A+R
Sbjct: 255 VFTKTKHGANKLTKH--LEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILVATDIAAR 312
Query: 439 GLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTL 479
G+D++ + VVN+D P+ E+YVHRIGRTAR+ TG + +L
Sbjct: 313 GIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSL 353
Score = 199 (75.1 bits), Expect = 6.9e-38, Sum P(3) = 6.9e-38
Identities = 39/97 (40%), Positives = 59/97 (60%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLI 193
AL+L PTRELA QI I ++ + + + ++GG Q L +G +++VATPGRL+
Sbjct: 83 ALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGVDVLVATPGRLL 142
Query: 194 DFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
D +++ +LDEADRMLDMGF I+K++
Sbjct: 143 DLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLM 179
Score = 130 (50.8 bits), Expect = 1.0e-30, Sum P(3) = 1.0e-30
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 231 QMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
Q+ R R +G +++VATPGRL+D +++ +LDEADRMLDMGF I+K++
Sbjct: 123 QIARLR---QGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLM 179
Score = 110 (43.8 bits), Expect = 6.9e-38, Sum P(3) = 6.9e-38
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI---ENTQVARGSQCGRSN 94
++ GY P+ IQAQ+ P +SGRD++ AQTG+GKT T+ + ++G++ +N
Sbjct: 22 RDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLSSSKGNKVSSNN 80
Score = 77 (32.2 bits), Expect = 3.0e-25, Sum P(3) = 3.0e-25
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
+L +++ +LDEADRMLDMGF I+K++
Sbjct: 141 LLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLM 179
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 357 (130.7 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 101/280 (36%), Positives = 147/280 (52%)
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
+ + L GAEIVV TPGRLID ++ T++ R+T+LV DEADRM DMGFE Q+R I
Sbjct: 373 QAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIAS-- 430
Query: 294 RHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 353
H P LF + R I + R+ + EA+ D+ QI +++Q
Sbjct: 431 -HVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANE--DI---TQIVEVLQS 484
Query: 354 TRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQW 413
+ ++ F AG VF+ N E + Y +HGD Q
Sbjct: 485 GQDKWGWLTRRLVEF---TSAG-SVLVFVTKKANCEELATNLIQEG-YSLGLLHGDMDQS 539
Query: 414 NRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKT 473
R++ + DF+ + VL+A+DVA+RGLD+ I+ VVNYD + + + HRIGRT R+ +
Sbjct: 540 ERNKVIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEK 599
Query: 474 GISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
G++YTL T + + A DL+ L A+Q V LL LA +N
Sbjct: 600 GVAYTLLTTKDTSFAGDLVRNLEGANQSVSKDLLDLAMQN 639
Score = 311 (114.5 bits), Expect = 4.2e-32, Sum P(2) = 4.2e-32
Identities = 62/123 (50%), Positives = 80/123 (65%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+I P L HI+ +LE G+GPIA+++ PTREL QQI A F + +R +YGG S
Sbjct: 311 FIWPILVHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSM 370
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L GAEIVV TPGRLID ++ T++ R+T+LV DEADRM DMGFE Q+R I
Sbjct: 371 WEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQVRSIAS 430
Query: 232 MTR 234
R
Sbjct: 431 HVR 433
Score = 117 (46.2 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 24/36 (66%), Positives = 27/36 (75%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
+ S Y +PT IQ Q PI LSGRD IGIA+TGSGKT
Sbjct: 273 RKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKT 308
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 231 (86.4 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 52/117 (44%), Positives = 73/117 (62%)
Query: 120 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179
+ +M + EE P ALVL PTRELA Q++ I+ R RI+ A +YG + Q +L
Sbjct: 62 LCEMVEWEENK-PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELK 120
Query: 180 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTR 236
+ IVV TPGR++D +E GT ++ R+ YLV+DEAD ML+MGF Q+ II T+
Sbjct: 121 QKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177
Score = 192 (72.6 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
IHG Q +R + DFR G L+A+DVA+RG+D+++I +V+NYD P E+YVHR G
Sbjct: 272 IHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTG 331
Query: 466 RTARSTKTGISYTLFTP 482
RT R+ +G + T TP
Sbjct: 332 RTGRAGNSGKAITFITP 348
Score = 146 (56.5 bits), Expect = 3.8e-28, Sum P(3) = 3.8e-28
Identities = 28/54 (51%), Positives = 39/54 (72%)
Query: 237 DLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
+L + IVV TPGR++D +E GT ++ R+ YLV+DEAD ML+MGF Q+ II
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAII 171
Score = 111 (44.1 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 243 EIVVATPGR-LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVP 301
+ +V TP R L ++ TN+ R + +A + G P R+ +++ + H VV
Sbjct: 74 QALVLTPTRELAVQVKEDITNIGRFKRI---KAAAIY--GKSPFARQKLELKQKTHIVVG 128
Query: 302 VSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
+L +E GT ++ R+ YLV+DEAD ML+MGF Q+ II
Sbjct: 129 TP-------GRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAII 171
Score = 93 (37.8 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+ + N ++ +V R L GY PT +Q + P+ L +DL+ +QTGSGKT S I
Sbjct: 3 KKSFSNYALSKEVR-RAL-TGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGI 60
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 231 (86.4 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 52/117 (44%), Positives = 73/117 (62%)
Query: 120 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLC 179
+ +M + EE P ALVL PTRELA Q++ I+ R RI+ A +YG + Q +L
Sbjct: 62 LCEMVEWEENK-PQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELK 120
Query: 180 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTR 236
+ IVV TPGR++D +E GT ++ R+ YLV+DEAD ML+MGF Q+ II T+
Sbjct: 121 QKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTK 177
Score = 192 (72.6 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
IHG Q +R + DFR G L+A+DVA+RG+D+++I +V+NYD P E+YVHR G
Sbjct: 272 IHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTG 331
Query: 466 RTARSTKTGISYTLFTP 482
RT R+ +G + T TP
Sbjct: 332 RTGRAGNSGKAITFITP 348
Score = 146 (56.5 bits), Expect = 3.8e-28, Sum P(3) = 3.8e-28
Identities = 28/54 (51%), Positives = 39/54 (72%)
Query: 237 DLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
+L + IVV TPGR++D +E GT ++ R+ YLV+DEAD ML+MGF Q+ II
Sbjct: 118 ELKQKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAII 171
Score = 111 (44.1 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 35/110 (31%), Positives = 56/110 (50%)
Query: 243 EIVVATPGR-LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVP 301
+ +V TP R L ++ TN+ R + +A + G P R+ +++ + H VV
Sbjct: 74 QALVLTPTRELAVQVKEDITNIGRFKRI---KAAAIY--GKSPFARQKLELKQKTHIVVG 128
Query: 302 VSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
+L +E GT ++ R+ YLV+DEAD ML+MGF Q+ II
Sbjct: 129 TP-------GRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAII 171
Score = 93 (37.8 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 20 RSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+ + N ++ +V R L GY PT +Q + P+ L +DL+ +QTGSGKT S I
Sbjct: 3 KKSFSNYALSKEVR-RAL-TGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGI 60
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 363 (132.8 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 94/270 (34%), Positives = 139/270 (51%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R + +G I+ ATPGRL+D + + +I YLVLDEADRMLDMGF P+++K+I
Sbjct: 411 RQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISC--- 467
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
P +P E+R T++ F + + R+ L + +G + +Q T
Sbjct: 468 --PGMPSK----EQRQTLM-FSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTV 520
Query: 356 FNTCVFLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414
F + G ER VF+E + + IHGD+ Q
Sbjct: 521 LQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKI-STTSIHGDREQRE 579
Query: 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
R+Q L DFR G VL+A+ VA+RGLD+E++++V+N+D P + YVHRIGRT R TG
Sbjct: 580 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 639
Query: 475 ISYTLFTPLNGNK-AQDLIDILNEAHQFVP 503
+ + F + N AQ L+ +L +A Q VP
Sbjct: 640 RAISFFDLESDNHLAQPLVKVLTDAQQDVP 669
Score = 229 (85.7 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 50/123 (40%), Positives = 72/123 (58%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L H++ +E P +++APTREL QI FS +R +YG
Sbjct: 343 FLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYG 402
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + R + +G I+ ATPGRL+D + + +I YLVLDEADRMLDMGF P+++
Sbjct: 403 GTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMK 462
Query: 228 KII 230
K+I
Sbjct: 463 KLI 465
Score = 102 (41.0 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY K T +Q S PI L+GRDL+ AQTGSGKT + +
Sbjct: 307 AGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLL 345
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 361 (132.1 bits), Expect = 2.2e-37, Sum P(2) = 2.2e-37
Identities = 92/270 (34%), Positives = 141/270 (52%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R + +G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF P+++K+I
Sbjct: 384 RQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLISC--- 440
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
P +P E+R T+L F + + R+ L + +G + +Q +
Sbjct: 441 --PGMPSK----EQRQTLL-FSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSI 493
Query: 356 FNTCVFLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414
+ + G ER VF+E + + IHGD+ Q
Sbjct: 494 LQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKI-STTSIHGDREQRE 552
Query: 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
R+Q L DFR G VL+A+ VA+RGLD+E++++V+N+D P + YVHRIGRT R TG
Sbjct: 553 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 612
Query: 475 ISYTLF-TPLNGNKAQDLIDILNEAHQFVP 503
+ + F T + + AQ L+ +L++A Q VP
Sbjct: 613 RAISFFDTESDNHLAQPLVKVLSDAQQDVP 642
Score = 234 (87.4 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 49/123 (39%), Positives = 74/123 (60%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L H+++ + +E P +++APTREL QI FS +R +YG
Sbjct: 316 FLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYG 375
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + R + +G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF P+++
Sbjct: 376 GTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMK 435
Query: 228 KII 230
K+I
Sbjct: 436 KLI 438
Score = 102 (41.0 bits), Expect = 2.2e-37, Sum P(2) = 2.2e-37
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY K T +Q S PI L+GRDL+ AQTGSGKT + +
Sbjct: 280 AGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLL 318
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 362 (132.5 bits), Expect = 2.2e-37, Sum P(2) = 2.2e-37
Identities = 94/270 (34%), Positives = 139/270 (51%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R + +G I+ ATPGRL+D + + +I YLVLDEADRMLDMGF P+++K+I
Sbjct: 390 RQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISC--- 446
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
P +P E+R T++ F + + R+ L + +G + +Q T
Sbjct: 447 --PGMPSK----EQRQTLM-FSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTV 499
Query: 356 FNTCVFLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414
F + G ER VF+E + + IHGD+ Q
Sbjct: 500 LQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKI-STTSIHGDREQRE 558
Query: 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
R+Q L DFR G VL+A+ VA+RGLD+E++++V+N+D P + YVHRIGRT R TG
Sbjct: 559 REQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 618
Query: 475 ISYTLFTPLNGNK-AQDLIDILNEAHQFVP 503
+ + F + N AQ L+ +L +A Q VP
Sbjct: 619 RAISFFDLESDNHLAQPLVKVLTDAQQDVP 648
Score = 234 (87.4 bits), Expect = 3.9e-22, Sum P(2) = 3.9e-22
Identities = 50/123 (40%), Positives = 73/123 (59%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L H++ + +E P +++APTREL QI FS +R +YG
Sbjct: 322 FLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYG 381
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + R + +G I+ ATPGRL+D + + +I YLVLDEADRMLDMGF P+++
Sbjct: 382 GTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMK 441
Query: 228 KII 230
K+I
Sbjct: 442 KLI 444
Score = 102 (41.0 bits), Expect = 2.2e-37, Sum P(2) = 2.2e-37
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY K T +Q S PI L+GRDL+ AQTGSGKT + +
Sbjct: 286 AGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLL 324
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 363 (132.8 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 95/275 (34%), Positives = 150/275 (54%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
RD+ +G I+ ATPGRL+D + ++++ YLVLDEADRMLDMGF P+I K+ MT+
Sbjct: 396 RDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKL--MTK- 452
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRIT--YLVLDEADRMLDM--GFEPQIRKII 351
P +P E+R T++ F + + R+ YL + ++ + G + + +
Sbjct: 453 --PGMPTK----EKRQTLM-FSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTV 505
Query: 352 QMTRFNTCVFLGYVLYFWFILVAGI-ER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGD 409
R N G + IL + ER +F+ Y + + + IHGD
Sbjct: 506 LEMREN-----GKMEKLLEILKSSEKERTMIFVNTKKKADFIAGY-LCQEKFSSTSIHGD 559
Query: 410 KSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTAR 469
+ Q+ R+ L DFR+G V++ + VA+RGLD+E++++V+NYD P + YVHRIGRT R
Sbjct: 560 REQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGR 619
Query: 470 STKTGISYTLFTPLNGNK-AQDLIDILNEAHQFVP 503
TG + + F + + A+ L+ IL +AHQ VP
Sbjct: 620 CGNTGKATSFFNVQDDHVIARPLVKILTDAHQEVP 654
Score = 227 (85.0 bits), Expect = 3.9e-21, Sum P(2) = 3.9e-21
Identities = 45/99 (45%), Positives = 64/99 (64%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGR 191
P A+++APTREL QI FS +R +YGG ++ RD+ +G I+ ATPGR
Sbjct: 352 PEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVHAMRDVEKGCNILCATPGR 411
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
L+D + ++++ YLVLDEADRMLDMGF P+I K++
Sbjct: 412 LLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLM 450
Score = 100 (40.3 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY K T +Q S PI ++GRDL+ AQTGSGKT + +
Sbjct: 292 AGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLL 330
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 314 (115.6 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 85/247 (34%), Positives = 124/247 (50%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R L + I+V TPGRL+D + T + + +VLDEAD ML+MGF I I+
Sbjct: 116 RALKKNPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPA 175
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
H + LF + I E TN + +A M + ++ + +
Sbjct: 176 EHQTL---LFSATMPAPIKRIAERFMTNPEHVKV----KAKEMTVSNIQQFYLEVHERKK 228
Query: 356 FNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNR 415
F+T L + +V G + E+ TE ++ Y A GIHGD +Q R
Sbjct: 229 FDTLTRLLDIQSPELAIVFGRTKRRVDEL----TEA----LNLRGYTAEGIHGDLTQAKR 280
Query: 416 DQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGI 475
LR F+ G I VL+A+DVA+RGLD+ + +V N+D P + E+YVHRIGRT R+ KTG+
Sbjct: 281 MVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGM 340
Query: 476 SYTLFTP 482
+ T TP
Sbjct: 341 AMTFITP 347
Score = 236 (88.1 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 47/106 (44%), Positives = 69/106 (65%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y A GIHGD +Q R LR F+ G I VL+A+DVA+RGLD+ + +V N+D P + E+Y
Sbjct: 266 YTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESY 325
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
VHRIGRT R+ KTG++ T TP + +D++ + + + DR+
Sbjct: 326 VHRIGRTGRAGKTGMAMTFITP----REKDMLRAIEQTTKRKMDRM 367
Score = 179 (68.1 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 40/97 (41%), Positives = 55/97 (56%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLI 193
A+V+APTRELA Q+ + + R R +YGG Q R L + I+V TPGRL+
Sbjct: 74 AIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGTPGRLL 133
Query: 194 DFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
D + T + + +VLDEAD ML+MGF I I+
Sbjct: 134 DHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESIL 170
Score = 98 (39.6 bits), Expect = 2.6e-37, Sum P(3) = 2.6e-37
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 28 IASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
++SD+ ++ + K G+ + T IQAQ+ P+ L+ +D+IG AQTG+GKT + I
Sbjct: 10 LSSDL-TKAI-KRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGI 59
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 362 (132.5 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
Identities = 94/270 (34%), Positives = 139/270 (51%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R + +G I+ ATPGRL+D + + +I YLVLDEADRMLDMGF P+++K+I
Sbjct: 410 RQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISC--- 466
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
P +P E+R T++ F + + R+ L + +G + +Q T
Sbjct: 467 --PGMPSK----EQRQTLM-FSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTV 519
Query: 356 FNTCVFLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414
F + G ER VF+E + + IHGD+ Q
Sbjct: 520 LQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKI-STTSIHGDREQRE 578
Query: 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
R+Q L DFR G VL+A+ VA+RGLD+E++++V+N+D P + YVHRIGRT R TG
Sbjct: 579 REQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 638
Query: 475 ISYTLFTPLNGNK-AQDLIDILNEAHQFVP 503
+ + F + N AQ L+ +L +A Q VP
Sbjct: 639 RAISFFDLESDNHLAQPLVKVLTDAQQDVP 668
Score = 234 (87.4 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 50/123 (40%), Positives = 73/123 (59%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L H++ + +E P +++APTREL QI FS +R +YG
Sbjct: 342 FLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYG 401
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + R + +G I+ ATPGRL+D + + +I YLVLDEADRMLDMGF P+++
Sbjct: 402 GTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMK 461
Query: 228 KII 230
K+I
Sbjct: 462 KLI 464
Score = 102 (41.0 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY K T +Q S PI L+GRDL+ AQTGSGKT + +
Sbjct: 306 AGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLL 344
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 203 (76.5 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 45/119 (37%), Positives = 66/119 (55%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LP L L+ + + AL+L PTRELA Q+ + + + ++ ++GG +
Sbjct: 55 FVLPILEK-LRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDE 113
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
Q + L G +++VATPGRL+D I +VLDEADRMLDMGF I KII
Sbjct: 114 QAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKII 172
Score = 185 (70.2 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
+F+E H + ++ A H +SQ R Q L DF+SG I L+A+ VA+RG
Sbjct: 248 IFIETKHGAAKLVSQLEKRGIH-AEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARG 306
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
+D++ + VVNYD P + YVHRIGRT R+ G
Sbjct: 307 IDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVG 341
Score = 130 (50.8 bits), Expect = 2.4e-29, Sum P(3) = 2.4e-29
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 231 QMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
+ + + L G +++VATPGRL+D I +VLDEADRMLDMGF I KII
Sbjct: 113 EQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKII 172
Score = 123 (48.4 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 29/63 (46%), Positives = 37/63 (58%)
Query: 30 SDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQ 89
SDV + + + GY KPT IQ Q+ P+ L GRDLI AQTG+GKT S + + R Q
Sbjct: 9 SDVLVQTVAQ-LGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQ 67
Query: 90 CGR 92
R
Sbjct: 68 TQR 70
Score = 82 (33.9 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 327 ITYLVLDEADRMLDMGFEPQIRKII 351
I +VLDEADRMLDMGF I KII
Sbjct: 148 IEMVVLDEADRMLDMGFIESINKII 172
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 203 (76.5 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 45/119 (37%), Positives = 66/119 (55%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LP L L+ + + AL+L PTRELA Q+ + + + ++ ++GG +
Sbjct: 55 FVLPILEK-LRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDE 113
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
Q + L G +++VATPGRL+D I +VLDEADRMLDMGF I KII
Sbjct: 114 QAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKII 172
Score = 185 (70.2 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 38/95 (40%), Positives = 54/95 (56%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
+F+E H + ++ A H +SQ R Q L DF+SG I L+A+ VA+RG
Sbjct: 248 IFIETKHGAAKLVSQLEKRGIH-AEAFHSGRSQAIRAQLLEDFKSGKIKYLVATGVAARG 306
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
+D++ + VVNYD P + YVHRIGRT R+ G
Sbjct: 307 IDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVG 341
Score = 130 (50.8 bits), Expect = 2.4e-29, Sum P(3) = 2.4e-29
Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 231 QMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
+ + + L G +++VATPGRL+D I +VLDEADRMLDMGF I KII
Sbjct: 113 EQAQKQRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKII 172
Score = 123 (48.4 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 29/63 (46%), Positives = 37/63 (58%)
Query: 30 SDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQ 89
SDV + + + GY KPT IQ Q+ P+ L GRDLI AQTG+GKT S + + R Q
Sbjct: 9 SDVLVQTVAQ-LGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEKLRQGQ 67
Query: 90 CGR 92
R
Sbjct: 68 TQR 70
Score = 82 (33.9 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 327 ITYLVLDEADRMLDMGFEPQIRKII 351
I +VLDEADRMLDMGF I KII
Sbjct: 148 IEMVVLDEADRMLDMGFIESINKII 172
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 219 (82.2 bits), Expect = 3.9e-37, Sum P(3) = 3.9e-37
Identities = 46/125 (36%), Positives = 72/125 (57%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+++PAL ++L P+ + G I L+L PTRELA Q+ ++ R+ + GG
Sbjct: 57 FVIPALQYLLDFPRRKAGPARI-LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQY 115
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L +IVVATPGRL++++++ + I +L+LDEADRMLDMGF P + ++
Sbjct: 116 QEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLST 175
Query: 232 MTRTR 236
R R
Sbjct: 176 ECRWR 180
Score = 193 (73.0 bits), Expect = 3.9e-37, Sum P(3) = 3.9e-37
Identities = 35/74 (47%), Positives = 53/74 (71%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
I G+ Q R+ + FR G +N+L+A+DVA+RG+DV DI +V+N+D P + + Y+HRIG
Sbjct: 276 IQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIG 335
Query: 466 RTARSTKTGISYTL 479
RT R+ K GI+ +L
Sbjct: 336 RTGRAGKKGIAISL 349
Score = 134 (52.2 bits), Expect = 7.9e-28, Sum P(3) = 7.9e-28
Identities = 24/47 (51%), Positives = 37/47 (78%)
Query: 243 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 289
+IVVATPGRL++++++ + I +L+LDEADRMLDMGF P + ++
Sbjct: 127 DIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
Score = 97 (39.2 bits), Expect = 3.9e-37, Sum P(3) = 3.9e-37
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ +PT +QA++ P L GRD++ A TG+GKT + I Q
Sbjct: 22 GFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
Score = 96 (38.9 bits), Expect = 6.6e-24, Sum P(3) = 6.6e-24
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 290 IQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 349
+Q HA + + +L ++++ + I +L+LDEADRMLDMGF P + +
Sbjct: 113 VQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDR 172
Query: 350 I 350
+
Sbjct: 173 L 173
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 219 (82.2 bits), Expect = 3.9e-37, Sum P(3) = 3.9e-37
Identities = 46/125 (36%), Positives = 72/125 (57%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+++PAL ++L P+ + G I L+L PTRELA Q+ ++ R+ + GG
Sbjct: 57 FVIPALQYLLDFPRRKAGPARI-LILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQY 115
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L +IVVATPGRL++++++ + I +L+LDEADRMLDMGF P + ++
Sbjct: 116 QEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLST 175
Query: 232 MTRTR 236
R R
Sbjct: 176 ECRWR 180
Score = 193 (73.0 bits), Expect = 3.9e-37, Sum P(3) = 3.9e-37
Identities = 35/74 (47%), Positives = 53/74 (71%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
I G+ Q R+ + FR G +N+L+A+DVA+RG+DV DI +V+N+D P + + Y+HRIG
Sbjct: 276 IQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIG 335
Query: 466 RTARSTKTGISYTL 479
RT R+ K GI+ +L
Sbjct: 336 RTGRAGKKGIAISL 349
Score = 134 (52.2 bits), Expect = 7.9e-28, Sum P(3) = 7.9e-28
Identities = 24/47 (51%), Positives = 37/47 (78%)
Query: 243 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 289
+IVVATPGRL++++++ + I +L+LDEADRMLDMGF P + ++
Sbjct: 127 DIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRL 173
Score = 97 (39.2 bits), Expect = 3.9e-37, Sum P(3) = 3.9e-37
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ +PT +QA++ P L GRD++ A TG+GKT + I Q
Sbjct: 22 GFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQ 63
Score = 96 (38.9 bits), Expect = 6.6e-24, Sum P(3) = 6.6e-24
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 290 IQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 349
+Q HA + + +L ++++ + I +L+LDEADRMLDMGF P + +
Sbjct: 113 VQYQEHADILATTQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDR 172
Query: 350 I 350
+
Sbjct: 173 L 173
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 221 (82.9 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 54/140 (38%), Positives = 81/140 (57%)
Query: 394 YGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDF 453
+G+S +A +HG+ SQ R +L+ FR G +N L+ASDVASRGLD+ +K V+NY+
Sbjct: 456 FGLSD--LKAAELHGNLSQEQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNM 513
Query: 454 PDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
P+N NY+HR+GRTAR+ G S + T N K L DI+ +A AK+
Sbjct: 514 PNNMANYIHRVGRTARAGMDGKSCSFITD-NDRKL--LKDIVTKARN---------KAKS 561
Query: 514 KPITTRQWKREYWRRKSSEI 533
+ ++ Q +WR + E+
Sbjct: 562 RSVS--QDNVNFWRNRIEEL 579
Score = 201 (75.8 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 48/125 (38%), Positives = 72/125 (57%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LP L +L E L+L PTRELA Q Q+V+ ++ I + GG S
Sbjct: 244 FLLPVLERLLFRDS--EYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSN 301
Query: 172 MYQTRDLCRGAEIVVATPGRLID-FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
Q +L + ++V+ATPGRLID L + ++ + L+LDEADR+LDMGF+ +I KI+
Sbjct: 302 KAQEVELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIV 361
Query: 231 QMTRT 235
+ T
Sbjct: 362 ESCPT 366
Score = 134 (52.2 bits), Expect = 1.0e-29, Sum P(3) = 1.0e-29
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 237 DLCRGAEIVVATPGRLID-FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
+L + ++V+ATPGRLID L + ++ + L+LDEADR+LDMGF+ +I KI++
Sbjct: 307 ELRKSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVE 362
Score = 99 (39.9 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
G+ +PT IQA++ P+ L+G+D++ A TGSGKT + +
Sbjct: 209 GFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLL 246
Score = 95 (38.5 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 315 HFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM--TRFNTCVF 361
H L + ++ + L+LDEADR+LDMGF+ +I KI++ T T +F
Sbjct: 325 HLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLF 373
Score = 43 (20.2 bits), Expect = 6.1e-24, Sum P(3) = 6.1e-24
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 184 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAE 243
I +A G+ D L S +T + +L +R+L E + +++ + TR+L +
Sbjct: 221 IPLALNGK--DILASASTGSGKTAAFLLPVLERLLFRDSEYRAIRVLILLPTRELALQCQ 278
Query: 244 IVV 246
V+
Sbjct: 279 SVM 281
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 298 (110.0 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 94/250 (37%), Positives = 130/250 (52%)
Query: 112 YILPALYHILKMPKLEE-GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTS 170
++LPAL I+ +PK G P+ LV+APTRELAQQI+ V R IR C YGG
Sbjct: 164 FLLPALLKIISLPKRPSYGATPLVLVMAPTRELAQQIEEVCKTSIRGTSIRQLCAYGGLG 223
Query: 171 KMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
K+ Q+R L G +IV+ TPGRL D L +++ + YLVLDEADRMLDMGF PQI +I
Sbjct: 224 KIDQSRILRNGVDIVIGTPGRLNDLLRKH--HLSSVQYLVLDEADRMLDMGFMPQIESLI 281
Query: 231 -QMTRTRD-LCRGA----EIVVATPGRLIDFLE--------SGTTNVNRITYLVLDEADR 276
Q+ + R L A E+ + L D ++ +G+ NV + + D +D
Sbjct: 282 DQIPKERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDL 341
Query: 277 MLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERR--DTILHFLESGTTNVNRITYLVLDE 334
D +I KI+ A P V +F +E+ D H+L S NV I L +
Sbjct: 342 QSDDLIYDEINKILT----ADPTNTVIVFCNEKYKCDDFQHYL-STQKNVKSIV-LHSGK 395
Query: 335 ADRMLDMGFE 344
RM + G +
Sbjct: 396 DQRMRESGLK 405
Score = 236 (88.1 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 52/135 (38%), Positives = 78/135 (57%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF + + +HY + +++ +H K Q R+ L+ FR I +LIA+DVA+RG
Sbjct: 365 VFCNEKYKCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARG 424
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAH 499
LD+ +K V NY P N E+YVHRIGRT R+ KTG +++ T N +DL+ IL +
Sbjct: 425 LDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSYVTTQTPN-LRDLVKILQRTN 483
Query: 500 QFVPDRLLLLAAKNK 514
Q +PD L A ++
Sbjct: 484 QKIPDFLEKFAVHSR 498
Score = 150 (57.9 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 50/143 (34%), Positives = 75/143 (52%)
Query: 231 QMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
++ ++R L G +IV+ TPGRL D L +++ + YLVLDEADRMLDMGF PQI +I
Sbjct: 224 KIDQSRILRNGVDIVIGTPGRLNDLLRKH--HLSSVQYLVLDEADRMLDMGFMPQIESLI 281
Query: 291 -QMTRHAHPVV-----P--VSLFISE-RRDTILHFLES----GTTNVNRITYLVLDEADR 337
Q+ + ++ P V L S+ +D I + S G+ NV + + D +D
Sbjct: 282 DQIPKERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSDL 341
Query: 338 MLDMGFEPQIRKIIQMTRFNTCV 360
D +I KI+ NT +
Sbjct: 342 QSDDLIYDEINKILTADPTNTVI 364
Score = 126 (49.4 bits), Expect = 1.3e-36, Sum P(3) = 1.3e-36
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
G+ PT IQ QSWPI L G DL+G+A TGSGKTL+ +
Sbjct: 129 GFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAFLL 166
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 254 (94.5 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 47/101 (46%), Positives = 70/101 (69%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
IHGD+ Q R+ LRDFR+G V++A+ VA+RGLD+E++ YV+N+D PD+ + YVHRIG
Sbjct: 568 IHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIG 627
Query: 466 RTARSTKTGISYTLFTPLNGNK---AQDLIDILNEAHQFVP 503
RT R TG + + F ++ A+ L+ +L++AHQ VP
Sbjct: 628 RTGRCGNTGRAISFFDKRGDDEQRIARSLVKVLSDAHQEVP 668
Score = 219 (82.2 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 46/124 (37%), Positives = 69/124 (55%)
Query: 112 YILPALYHIL----KMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L H++ + + P A+++APTREL QI FS +R +YG
Sbjct: 340 FLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVRPVVIYG 399
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + + + G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF I
Sbjct: 400 GTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIE 459
Query: 228 KIIQ 231
+++
Sbjct: 460 NLLK 463
Score = 138 (53.6 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
+ + G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF I +++
Sbjct: 408 KQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLK 463
Score = 109 (43.4 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 31/67 (46%), Positives = 38/67 (56%)
Query: 37 LGKN---SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS--LTIENTQVARGSQCG 91
L KN SGY K T IQ S PI ++GRDL+ AQTGSGKT + L I + +G +
Sbjct: 297 LAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTGSGKTAAFLLPILAHLMVKGVESS 356
Query: 92 RSNTSKE 98
T KE
Sbjct: 357 AFQTLKE 363
Score = 91 (37.1 bits), Expect = 2.7e-30, Sum P(3) = 2.7e-30
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
+L + + ++ YLVLDEADRMLDMGF I +++
Sbjct: 424 LLDVIRKEKIGLTKLRYLVLDEADRMLDMGFREDIENLLK 463
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 356 (130.4 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 92/270 (34%), Positives = 138/270 (51%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R + +G I+ ATPGRL+D + + +I YLVLDEADRMLDMGF P+++K+I
Sbjct: 408 RQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISC--- 464
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
P +P E+R T++ F + + R+ L + +G + +Q
Sbjct: 465 --PGMPSK----EQRQTLM-FSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQAD 517
Query: 356 FNTCVFLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414
+ + G ER VF+E + + IHGD+ Q
Sbjct: 518 LQVGQYSKREKLLEILRNIGDERTMVFVETKKKADFIATFLCQEKI-STTSIHGDREQRE 576
Query: 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
R+Q L DFR G VL+A+ VA+RGLD+E++++V+N+D P + YVHRIGRT R TG
Sbjct: 577 REQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 636
Query: 475 ISYTLFTPLNGNK-AQDLIDILNEAHQFVP 503
+ + F + N AQ L+ +L +A Q VP
Sbjct: 637 RAISFFDLESDNHLAQPLVKVLTDAQQDVP 666
Score = 234 (87.4 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 50/123 (40%), Positives = 73/123 (59%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L H++ + +E P +++APTREL QI FS +R +YG
Sbjct: 340 FLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYG 399
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + R + +G I+ ATPGRL+D + + +I YLVLDEADRMLDMGF P+++
Sbjct: 400 GTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMK 459
Query: 228 KII 230
K+I
Sbjct: 460 KLI 462
Score = 102 (41.0 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY K T +Q S PI L+GRDL+ AQTGSGKT + +
Sbjct: 304 AGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLL 342
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 207 (77.9 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 45/122 (36%), Positives = 73/122 (59%)
Query: 112 YILPALYHILKMPKLEEGDGPI-ALVLAPTRELAQQI-QAVISIFSR-TMRIRHACLYGG 168
+ LP L + + ++ G + LVL PTRELAQQ+ + +S S +++ +GG
Sbjct: 63 FALPLLQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGG 122
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
S Q + L GA+++VATPGRL+D L S + +++ VLDEADRML +GF ++ +
Sbjct: 123 VSVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQ 182
Query: 229 II 230
++
Sbjct: 183 VL 184
Score = 200 (75.5 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 37/97 (38%), Positives = 65/97 (67%)
Query: 385 NHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVED 444
NH + G+S+ ++ HGDK+Q R + L F++G I+VLIA+D+A+RG+D++
Sbjct: 267 NHLAQKLSKRGISAEVF-----HGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDK 321
Query: 445 IKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFT 481
+ V+N+D P + +Y+HRIGR+ R+ + G++ TL +
Sbjct: 322 LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLIS 358
Score = 135 (52.6 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
+ L GA+++VATPGRL+D L S + +++ VLDEADRML +GF ++ +++
Sbjct: 130 QSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVL 184
Score = 96 (38.9 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY PT +QA + P LSGRD++ A TGSGKT + +
Sbjct: 28 GYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFAL 65
Score = 80 (33.2 bits), Expect = 5.7e-23, Sum P(3) = 5.7e-23
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
+L L S + +++ VLDEADRML +GF ++ +++
Sbjct: 146 LLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVL 184
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 207 (77.9 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 45/122 (36%), Positives = 73/122 (59%)
Query: 112 YILPALYHILKMPKLEEGDGPI-ALVLAPTRELAQQI-QAVISIFSR-TMRIRHACLYGG 168
+ LP L + + ++ G + LVL PTRELAQQ+ + +S S +++ +GG
Sbjct: 63 FALPLLQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGG 122
Query: 169 TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 228
S Q + L GA+++VATPGRL+D L S + +++ VLDEADRML +GF ++ +
Sbjct: 123 VSVNLQMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQ 182
Query: 229 II 230
++
Sbjct: 183 VL 184
Score = 200 (75.5 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 37/97 (38%), Positives = 65/97 (67%)
Query: 385 NHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVED 444
NH + G+S+ ++ HGDK+Q R + L F++G I+VLIA+D+A+RG+D++
Sbjct: 267 NHLAQKLSKRGISAEVF-----HGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDK 321
Query: 445 IKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFT 481
+ V+N+D P + +Y+HRIGR+ R+ + G++ TL +
Sbjct: 322 LPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLIS 358
Score = 135 (52.6 bits), Expect = 1.2e-28, Sum P(3) = 1.2e-28
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
+ L GA+++VATPGRL+D L S + +++ VLDEADRML +GF ++ +++
Sbjct: 130 QSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVL 184
Score = 96 (38.9 bits), Expect = 3.1e-36, Sum P(3) = 3.1e-36
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY PT +QA + P LSGRD++ A TGSGKT + +
Sbjct: 28 GYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFAL 65
Score = 80 (33.2 bits), Expect = 5.7e-23, Sum P(3) = 5.7e-23
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
+L L S + +++ VLDEADRML +GF ++ +++
Sbjct: 146 LLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVL 184
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 311 (114.5 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 81/264 (30%), Positives = 139/264 (52%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVV 300
G +I+VATPGRL+D +E+G N + VLDEAD MLDMGF ++ II +
Sbjct: 125 GLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISK-------L 177
Query: 301 PVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV 360
P S R T+L F + + + +L + + + + E ++ + ++
Sbjct: 178 PKS------RQTLL-FSATMPAEIEILAEAILTDPTK-IQITAETVTIDLVNQSVYHLDK 229
Query: 361 FLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTL 419
L F + A E+ +F + + G + + + A +H K+Q R++ L
Sbjct: 230 SNKVPLLFNILTKADYEKVLIFCKTKY-GADIIVKALEKASITAASLHSGKTQAVREEAL 288
Query: 420 RDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTL 479
++F+ + VL+A+DVA+RG+DV++I V+NY+ P++ NY+HRIGRTAR+ K+G++ +
Sbjct: 289 QNFKDSTLRVLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISF 348
Query: 480 FTPLNGNKAQDLIDILNEAHQFVP 503
N + L +I N Q +P
Sbjct: 349 AVE---NDIRQLTNIENSIGQVIP 369
Score = 210 (79.0 bits), Expect = 7.3e-21, Sum P(2) = 7.3e-21
Identities = 44/104 (42%), Positives = 65/104 (62%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLI 193
+L+L PTRELA QI I +S + ++ +YGG + Q + G +I+VATPGRL+
Sbjct: 78 SLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLDILVATPGRLL 137
Query: 194 DFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII-QMTRTR 236
D +E+G N + VLDEAD MLDMGF ++ II ++ ++R
Sbjct: 138 DLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSR 181
Score = 105 (42.0 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY +PT IQ + P ++G DL+GIAQTG+GKT + ++
Sbjct: 21 GYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSL 58
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 212 (79.7 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 50/139 (35%), Positives = 74/139 (53%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LP H+L P+ + G P L+L PTRELA QI + +I+ + GG +
Sbjct: 67 FLLPIAQHLLDYPRTKPGF-PRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNY 125
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L +I+VATPGRL++++E+ + I LVLDEADRMLD+GF I +I+
Sbjct: 126 GSHADILTSTTDILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVA 185
Query: 232 MTRTRDLCRGAEIVVATPG 250
R R + +PG
Sbjct: 186 EARWRKQTMLFSATLESPG 204
Score = 200 (75.5 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 47/136 (34%), Positives = 77/136 (56%)
Query: 375 GIERWVFMEINHNGTETKHYGVSSSLYR----AMGIHGDKSQWNRDQTLRDFRSGYINVL 430
G+ER V N ET Y +S LY + + G Q R++ + F+ G + VL
Sbjct: 256 GVERTVVFA---NKRETVQY-LSGKLYAEELPCVWLEGKMPQDKRNKAIERFKKGEVKVL 311
Query: 431 IASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQD 490
+A+DVA+RGLD++DI +V+N+D P + Y+HRIGRT R+ K G + +L +A D
Sbjct: 312 VATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLV------EAHD 365
Query: 491 LIDILNEAHQFVPDRL 506
+ ++ + ++ +RL
Sbjct: 366 M-GVIGKIERYTKERL 380
Score = 135 (52.6 bits), Expect = 1.7e-27, Sum P(3) = 1.7e-27
Identities = 26/52 (50%), Positives = 37/52 (71%)
Query: 243 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
+I+VATPGRL++++E+ + I LVLDEADRMLD+GF I +I+ R
Sbjct: 137 DILVATPGRLLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEAR 188
Score = 96 (38.9 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRF 356
+L ++E+ + I LVLDEADRMLD+GF I +I+ R+
Sbjct: 146 LLEYIENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARW 189
Score = 85 (35.0 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
GY KPTSIQ P + G+D++ A TG+GKT + + Q
Sbjct: 32 GYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQ 73
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 202 (76.2 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 65/213 (30%), Positives = 98/213 (46%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTM-RIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRL 192
ALV+ PTRELA Q+ + +R I+ L GG S Q L GA I+V TPGR+
Sbjct: 77 ALVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIASLEHGAHIIVGTPGRI 136
Query: 193 IDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT--RTRDLCRGAEIVVATPG 250
L G+ ++ + LVLDEADRMLDMGF I II+ T R + L A V
Sbjct: 137 QQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSRRQTLLFSATYPVGIKQ 196
Query: 251 RLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERR 310
F+ T + R ++ E ++ + ++ H P V+ ++++
Sbjct: 197 LASKFMRDPQTVKAEAFHDDTQIEQRFYEISPEERMSAVTKVLHHFRPASCVAFCFTKQQ 256
Query: 311 --DTILHFLESGTTNVNRITYLVLDEADRMLDM 341
+T+ H G + V L + D++L M
Sbjct: 257 VQETVDHLTAKGISAVGLHGDLEQRDRDQVLAM 289
Score = 196 (74.1 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 39/96 (40%), Positives = 65/96 (67%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A+G+HGD Q +RDQ L F + +VL+A+DVA+RGLD++ + V+N + ++E ++H
Sbjct: 271 AVGLHGDLEQRDRDQVLAMFANRSTSVLVATDVAARGLDIDALDMVINVELARDSEIHIH 330
Query: 463 RIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEA 498
R+GRT R+ + GI+ +L P ++AQ I+ L +A
Sbjct: 331 RVGRTGRAGEKGIAVSLVAPSEAHRAQ-AIEQLQKA 365
Score = 103 (41.3 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY + T IQAQS P+ L G DLI A+TGSGKT + I
Sbjct: 25 GYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGI 62
Score = 93 (37.8 bits), Expect = 2.7e-24, Sum P(3) = 2.7e-24
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT--RFNTCVF 361
I L G+ ++ + LVLDEADRMLDMGF I II+ T R T +F
Sbjct: 136 IQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSRRQTLLF 186
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 355 (130.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 91/270 (33%), Positives = 141/270 (52%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R + +G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF P+++K+I
Sbjct: 412 RQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISC--- 468
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
P +P E+R T++ F + + R+ L + +G + +Q T
Sbjct: 469 --PGMPSK----EQRQTLM-FSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTI 521
Query: 356 FNTCVFLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414
+ + G ER VF+E + + IHGD+ Q
Sbjct: 522 LQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKI-STTSIHGDREQRE 580
Query: 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
R+Q L DFR G VL+A+ VA+RGLD+E++++V+N+D P + YVHRIGRT R TG
Sbjct: 581 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 640
Query: 475 ISYTLFTPLNGNK-AQDLIDILNEAHQFVP 503
+ + F + ++ AQ L+ +L++A Q VP
Sbjct: 641 RAISFFDLESDSQLAQPLVKVLSDAQQDVP 670
Score = 234 (87.4 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 49/123 (39%), Positives = 74/123 (60%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L H+++ + +E P +++APTREL QI FS +R +YG
Sbjct: 344 FLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYG 403
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + R + +G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF P+++
Sbjct: 404 GTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMK 463
Query: 228 KII 230
K+I
Sbjct: 464 KLI 466
Score = 95 (38.5 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY K T +Q S PI GRDL+ AQTGSGKT + +
Sbjct: 308 AGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLL 346
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 355 (130.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 91/270 (33%), Positives = 141/270 (52%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R + +G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF P+++K+I
Sbjct: 412 RQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMKKLISC--- 468
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
P +P E+R T++ F + + R+ L + +G + +Q T
Sbjct: 469 --PGMPSK----EQRQTLM-FSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTI 521
Query: 356 FNTCVFLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414
+ + G ER VF+E + + IHGD+ Q
Sbjct: 522 LQVGQYSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKI-STTSIHGDREQRE 580
Query: 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
R+Q L DFR G VL+A+ VA+RGLD+E++++V+N+D P + YVHRIGRT R TG
Sbjct: 581 REQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTG 640
Query: 475 ISYTLFTPLNGNK-AQDLIDILNEAHQFVP 503
+ + F + ++ AQ L+ +L++A Q VP
Sbjct: 641 RAISFFDLESDSQLAQPLVKVLSDAQQDVP 670
Score = 234 (87.4 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 49/123 (39%), Positives = 74/123 (60%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L H+++ + +E P +++APTREL QI FS +R +YG
Sbjct: 344 FLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYG 403
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + R + +G I+ ATPGRL+D + + ++ YLVLDEADRMLDMGF P+++
Sbjct: 404 GTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMGFGPEMK 463
Query: 228 KII 230
K+I
Sbjct: 464 KLI 466
Score = 95 (38.5 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY K T +Q S PI GRDL+ AQTGSGKT + +
Sbjct: 308 AGYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLL 346
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 322 (118.4 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 102/272 (37%), Positives = 140/272 (51%)
Query: 243 EIV-VATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVP 301
E+V +ATPGRL+D L +++ YL LDEADRM+DMGFE IR I + +
Sbjct: 165 EVVKLATPGRLMDLLNKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQRQTL- 223
Query: 302 VSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQ-IRKIIQMTRFNTCV 360
LF + I +F +S V IT V LD+ E + +++ +M C+
Sbjct: 224 --LFSATMPKKIQNFAKSAL--VKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLECL 279
Query: 361 FLGY--VLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQT 418
VL F E+ ++ H K GV A+ IHG K Q R +
Sbjct: 280 QKTPPPVLIF-------AEKKADVDAIHEYLLLK--GVE-----AVAIHGGKDQEERTKA 325
Query: 419 LRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYT 478
+ F+ G +VL+A+DVAS+GLD I++VVNYD P+ ENYVHRIGRT RS KTGI+ T
Sbjct: 326 IEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATT 385
Query: 479 LFTP-LNGNKAQDLIDILNEAHQFVPDRLLLL 509
+ + DL +L EA Q VP L +L
Sbjct: 386 FINKGCDESVLMDLKALLVEAKQKVPPVLQVL 417
Score = 160 (61.4 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 61/217 (28%), Positives = 102/217 (47%)
Query: 112 YILPALYHILKMPK---LEEGDGPIALVLAPTRELAQQIQ-AVISIFSRTM------RIR 161
+ LP + L+ K + +GP L++ P+ +A+ +I + + + ++R
Sbjct: 91 FTLPIIMFCLEQEKRLPFCKREGPYGLIICPSVNVAKHTHHGIIEYYCKLLEDEGAPQMR 150
Query: 162 HACLYGGTSKMYQTRDLCRGAEIV-VATPGRLIDFLESGTTNVNRITYLVLDEADRMLDM 220
A GG S Q E+V +ATPGRL+D L +++ YL LDEADRM+DM
Sbjct: 151 CALCIGGMSVKEQM-------EVVKLATPGRLMDLLNKKMVSLDICRYLALDEADRMIDM 203
Query: 221 GFEPQIRKIIQMTRTRDLCRGAEIVVAT-PGRLIDFLESG-----TTNVNRITYLVLDEA 274
GFE IR I + + R + AT P ++ +F +S T NV R LD
Sbjct: 204 GFEEDIRTIFSYFKGQ---RQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVI 260
Query: 275 DRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRD 311
+ + E ++ +++ + P PV +F ++ D
Sbjct: 261 QEVEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKAD 295
Score = 117 (46.2 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 27/45 (60%), Positives = 30/45 (66%)
Query: 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GL K G PT IQ Q P LSGRD+IGIA TGSGKTL T+
Sbjct: 50 KGL-KKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTL 93
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 203 (76.5 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 44/100 (44%), Positives = 62/100 (62%)
Query: 135 LVLAPTRELAQQIQAVISIFSRTMR-IRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLI 193
LVL PTRELA Q+ I +R + ++ L GG Q L GA I+V TPGR++
Sbjct: 73 LVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIV 132
Query: 194 DFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 233
D L+ +++ + LVLDEADRML+MGF+PQ+ II+ +
Sbjct: 133 DHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQS 172
Score = 199 (75.1 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ + +HGD Q +RD+TL F + VL+A+DVA+RGLD++ + V NY +TE +
Sbjct: 265 FSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVH 324
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE--AHQFVPDRLLLLAAKNKP 515
+HRIGRT R+ G +YT + +G K L + L+ + +P LL +A N P
Sbjct: 325 IHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLDREITSESLPSLSLLGSAPNAP 381
Score = 152 (58.6 bits), Expect = 2.9e-30, Sum P(3) = 2.9e-30
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVV 300
GA I+V TPGR++D L+ +++ + LVLDEADRML+MGF+PQ+ II+ + +
Sbjct: 120 GAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTL 179
Query: 301 PVSLFISERRDTI 313
S E+ +I
Sbjct: 180 LFSATFPEQIQSI 192
Score = 100 (40.3 bits), Expect = 7.0e-25, Sum P(3) = 7.0e-25
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 354
I+ L+ +++ + LVLDEADRML+MGF+PQ+ II+ +
Sbjct: 131 IVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQS 172
Score = 98 (39.6 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
GY + T IQAQS P L+G D+IG +TGSGKT
Sbjct: 20 GYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKT 52
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 203 (76.5 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 44/100 (44%), Positives = 62/100 (62%)
Query: 135 LVLAPTRELAQQIQAVISIFSRTMR-IRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLI 193
LVL PTRELA Q+ I +R + ++ L GG Q L GA I+V TPGR++
Sbjct: 73 LVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIV 132
Query: 194 DFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 233
D L+ +++ + LVLDEADRML+MGF+PQ+ II+ +
Sbjct: 133 DHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQS 172
Score = 199 (75.1 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ + +HGD Q +RD+TL F + VL+A+DVA+RGLD++ + V NY +TE +
Sbjct: 265 FSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVH 324
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNE--AHQFVPDRLLLLAAKNKP 515
+HRIGRT R+ G +YT + +G K L + L+ + +P LL +A N P
Sbjct: 325 IHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLDREITSESLPSLSLLGSAPNAP 381
Score = 152 (58.6 bits), Expect = 2.9e-30, Sum P(3) = 2.9e-30
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVV 300
GA I+V TPGR++D L+ +++ + LVLDEADRML+MGF+PQ+ II+ + +
Sbjct: 120 GAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTL 179
Query: 301 PVSLFISERRDTI 313
S E+ +I
Sbjct: 180 LFSATFPEQIQSI 192
Score = 100 (40.3 bits), Expect = 7.0e-25, Sum P(3) = 7.0e-25
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 354
I+ L+ +++ + LVLDEADRML+MGF+PQ+ II+ +
Sbjct: 131 IVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQS 172
Score = 98 (39.6 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
GY + T IQAQS P L+G D+IG +TGSGKT
Sbjct: 20 GYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKT 52
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 217 (81.4 bits), Expect = 2.4e-35, Sum P(3) = 2.4e-35
Identities = 49/125 (39%), Positives = 68/125 (54%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+LPAL H+L P+ + G P L+L PTRELA Q+ ++ + A + GG +
Sbjct: 58 YLLPALQHLLDFPRKKSGP-PRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAY 116
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
M +IVVAT GRL+ +++ + + L+LDEADRMLDMGF I I
Sbjct: 117 MNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAG 176
Query: 232 MTRTR 236
TR R
Sbjct: 177 ETRWR 181
Score = 179 (68.1 bits), Expect = 2.4e-35, Sum P(3) = 2.4e-35
Identities = 30/74 (40%), Positives = 52/74 (70%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+ G+ Q R++ ++ G +NVL+A+DVA+RG+D+ D+ +V N+D P + + Y+HRIG
Sbjct: 278 LEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIG 337
Query: 466 RTARSTKTGISYTL 479
RTAR+ + G + +L
Sbjct: 338 RTARAGRKGTAISL 351
Score = 120 (47.3 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 229 IIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRK 288
+ M +IVVAT GRL+ +++ + + L+LDEADRMLDMGF I
Sbjct: 114 VAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEH 173
Query: 289 IIQMTR 294
I TR
Sbjct: 174 IAGETR 179
Score = 98 (39.6 bits), Expect = 2.4e-35, Sum P(3) = 2.4e-35
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
++ G+ +PT+IQA + P L GRD++G A TG+GKT + + Q
Sbjct: 20 QDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64
Score = 87 (35.7 bits), Expect = 2.8e-21, Sum P(3) = 2.8e-21
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRF 356
+L +++ + + L+LDEADRMLDMGF I I TR+
Sbjct: 137 LLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRW 180
Score = 40 (19.1 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 93 SNTSKEESSWWNNNVVDVKYILPALYHILKMPK 125
S +++ W D+++ L H+LK P+
Sbjct: 215 STRERKKIHQWYYRADDLEHKTALLVHLLKQPE 247
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 218 (81.8 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 45/120 (37%), Positives = 70/120 (58%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LP L+ PK+ +++L PTRELA Q++ I+ +++ + + +YGG
Sbjct: 55 FVLPLLHRFADAPKIRP-KRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDA 113
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L G +++VATPGRL+D + ++ LVLDEADRMLDMGF I II+
Sbjct: 114 APQKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIE 173
Score = 181 (68.8 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 32/72 (44%), Positives = 49/72 (68%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A H +SQ R+Q L DF++G + L+A+ V SRG+D++ ++ V+NYD PD ++Y+H
Sbjct: 270 AEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIH 329
Query: 463 RIGRTARSTKTG 474
RIGRT R+ G
Sbjct: 330 RIGRTGRAGNQG 341
Score = 135 (52.6 bits), Expect = 4.5e-26, Sum P(3) = 4.5e-26
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
L G +++VATPGRL+D + ++ LVLDEADRMLDMGF I II+
Sbjct: 120 LIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIE 173
Score = 96 (38.9 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY PT IQ Q+ P L+G++++ AQTG+GKT S +
Sbjct: 20 GYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVL 57
Score = 84 (34.6 bits), Expect = 8.2e-21, Sum P(3) = 8.2e-21
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 325 NRITYLVLDEADRMLDMGFEPQIRKIIQ 352
+ ++ LVLDEADRMLDMGF I II+
Sbjct: 146 DEVSVLVLDEADRMLDMGFIEDINNIIE 173
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 218 (81.8 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 45/120 (37%), Positives = 70/120 (58%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LP L+ PK+ +++L PTRELA Q++ I+ +++ + + +YGG
Sbjct: 55 FVLPLLHRFADAPKIRP-KRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDA 113
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L G +++VATPGRL+D + ++ LVLDEADRMLDMGF I II+
Sbjct: 114 APQKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIE 173
Score = 181 (68.8 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 32/72 (44%), Positives = 49/72 (68%)
Query: 403 AMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVH 462
A H +SQ R+Q L DF++G + L+A+ V SRG+D++ ++ V+NYD PD ++Y+H
Sbjct: 270 AEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIH 329
Query: 463 RIGRTARSTKTG 474
RIGRT R+ G
Sbjct: 330 RIGRTGRAGNQG 341
Score = 135 (52.6 bits), Expect = 4.5e-26, Sum P(3) = 4.5e-26
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
L G +++VATPGRL+D + ++ LVLDEADRMLDMGF I II+
Sbjct: 120 LIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIE 173
Score = 96 (38.9 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY PT IQ Q+ P L+G++++ AQTG+GKT S +
Sbjct: 20 GYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVL 57
Score = 84 (34.6 bits), Expect = 8.2e-21, Sum P(3) = 8.2e-21
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 325 NRITYLVLDEADRMLDMGFEPQIRKIIQ 352
+ ++ LVLDEADRMLDMGF I II+
Sbjct: 146 DEVSVLVLDEADRMLDMGFIEDINNIIE 173
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 328 (120.5 bits), Expect = 3.2e-35, Sum P(2) = 3.2e-35
Identities = 82/251 (32%), Positives = 139/251 (55%)
Query: 233 TRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 292
++T+ L +G +++VATPGRL++ L +++++ +LVLDEADRMLDMGF I K++
Sbjct: 133 SQTKMLKQGLDVLVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLA 192
Query: 293 TRHAHPVVPVSLFISERRDTILH-FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
+H H + S S+R ++ + L+S T + + + E + R+++
Sbjct: 193 VKHKHQTLMFSATFSDRVKSLANQLLKSPKTISVSKENTTSGKIKQAVYWVTEERKRELL 252
Query: 352 QMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKS 411
+G + ++ AG + N E K G+ ++L HGDK+
Sbjct: 253 SE-------LIGVNNWQQVLVFAGTKE----SANTLAKELKLDGIKAAL-----CHGDKT 296
Query: 412 QWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARST 471
Q R++ L F G + VL+A+DVA+RGLD+ D+ +VVN+ P E+YVHR+GRT R+
Sbjct: 297 QGARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAG 356
Query: 472 KTGISYTLFTP 482
K+G + +L +P
Sbjct: 357 KSGTAISLVSP 367
Score = 224 (83.9 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 47/106 (44%), Positives = 68/106 (64%)
Query: 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEI 184
K G AL+L PTRELA Q+ I FS+ + I+ +YGG QT+ L +G ++
Sbjct: 85 KSASGQAIRALILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLKQGLDV 144
Query: 185 VVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
+VATPGRL++ L +++++ +LVLDEADRMLDMGF I K++
Sbjct: 145 LVATPGRLLEHLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLL 190
Score = 96 (38.9 bits), Expect = 3.2e-35, Sum P(2) = 3.2e-35
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ-VARGSQCGRSNT-S 96
K GY T IQ ++ P+ G DL+ AQTG+GKT + ++ +A+ + +S+T S
Sbjct: 17 KACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPILDAIAKANHAAKSSTTS 76
Query: 97 KEESS 101
+E+S
Sbjct: 77 TDENS 81
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 214 (80.4 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 46/128 (35%), Positives = 76/128 (59%)
Query: 112 YILPALYHILK--MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+++ H+L +P+ + + P A+++APTRELA QI + ++ R++ +YGG
Sbjct: 63 FLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGE 122
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
S Q + L +G +I++ T GR+ID++ G N+N I +VLDEADRM D+GF IR +
Sbjct: 123 SYDVQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFL 182
Query: 230 IQMTRTRD 237
+ D
Sbjct: 183 FRRMPNAD 190
Score = 190 (71.9 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF H+ E + +R + GD Q R + L F G +++L+A+DVA+RG
Sbjct: 261 VFSNTKHS-CENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARG 319
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGIS 476
L + D+ +V NYD PD+ E+YVHRIGRT R+ G+S
Sbjct: 320 LHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVS 356
Score = 132 (51.5 bits), Expect = 3.2e-26, Sum P(3) = 3.2e-26
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHA 296
L +G +I++ T GR+ID++ G N+N I +VLDEADRM D+GF IR + + +A
Sbjct: 131 LDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNA 189
Score = 91 (37.1 bits), Expect = 5.5e-22, Sum P(3) = 5.5e-22
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 348
I+ ++ G N+N I +VLDEADRM D+GF IR
Sbjct: 145 IIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIR 180
Score = 88 (36.0 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+ L +N G+ T IQA S P+ L +D+ G AQTG+GKT++ +
Sbjct: 22 QALAEN-GFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV 65
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 214 (80.4 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 46/128 (35%), Positives = 76/128 (59%)
Query: 112 YILPALYHILK--MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGT 169
+++ H+L +P+ + + P A+++APTRELA QI + ++ R++ +YGG
Sbjct: 63 FLVATFNHLLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGE 122
Query: 170 SKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
S Q + L +G +I++ T GR+ID++ G N+N I +VLDEADRM D+GF IR +
Sbjct: 123 SYDVQRKVLDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFL 182
Query: 230 IQMTRTRD 237
+ D
Sbjct: 183 FRRMPNAD 190
Score = 190 (71.9 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 39/97 (40%), Positives = 57/97 (58%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF H+ E + +R + GD Q R + L F G +++L+A+DVA+RG
Sbjct: 261 VFSNTKHS-CENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQLDILVATDVAARG 319
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGIS 476
L + D+ +V NYD PD+ E+YVHRIGRT R+ G+S
Sbjct: 320 LHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVS 356
Score = 132 (51.5 bits), Expect = 3.2e-26, Sum P(3) = 3.2e-26
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHA 296
L +G +I++ T GR+ID++ G N+N I +VLDEADRM D+GF IR + + +A
Sbjct: 131 LDQGVDILIGTTGRIIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNA 189
Score = 91 (37.1 bits), Expect = 5.5e-22, Sum P(3) = 5.5e-22
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 348
I+ ++ G N+N I +VLDEADRM D+GF IR
Sbjct: 145 IIDYVRQGIINLNAIQAVVLDEADRMFDLGFIKDIR 180
Score = 88 (36.0 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 35 RGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+ L +N G+ T IQA S P+ L +D+ G AQTG+GKT++ +
Sbjct: 22 QALAEN-GFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLV 65
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 204 (76.9 bits), Expect = 4.7e-35, Sum P(3) = 4.7e-35
Identities = 45/100 (45%), Positives = 58/100 (58%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDLCRGAEIVVATPGRL 192
AL+LAPTRELA QIQ V+ M++ HAC+ GGT+ R L G +VV TPGR+
Sbjct: 101 ALILAPTRELATQIQRVVMALGEYMKVHSHACI-GGTNVREDARILESGCHVVVGTPGRV 159
Query: 193 IDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 232
D + I VLDEAD ML GF+ QI+ + +M
Sbjct: 160 YDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKM 199
Score = 197 (74.4 bits), Expect = 4.7e-35, Sum P(3) = 4.7e-35
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q +R+ ++ FRSG VLI +D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 294 FTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPSNRENY 353
Query: 461 VHRIGRTARSTKTGISYTLFT 481
+HRIGR R + G++ T
Sbjct: 354 IHRIGRGGRFGRKGVAINFIT 374
Score = 112 (44.5 bits), Expect = 2.1e-25, Sum P(3) = 2.1e-25
Identities = 24/57 (42%), Positives = 31/57 (54%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 292
R L G +VV TPGR+ D + I VLDEAD ML GF+ QI+ + +M
Sbjct: 143 RILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKM 199
Score = 89 (36.4 bits), Expect = 4.7e-35, Sum P(3) = 4.7e-35
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 42 GYG--KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GYG KP++IQ ++ C+ GRD+I AQ+G+GKT + +I
Sbjct: 47 GYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSI 86
Score = 69 (29.3 bits), Expect = 5.8e-21, Sum P(3) = 5.8e-21
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 327 ITYLVLDEADRMLDMGFEPQIRKIIQM 353
I VLDEAD ML GF+ QI+ + +M
Sbjct: 173 IKLFVLDEADEMLSRGFKDQIQDVFKM 199
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 272 (100.8 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
Identities = 60/135 (44%), Positives = 81/135 (60%)
Query: 110 VKYILPALYHI-LKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT-MRIRHACLYG 167
+ Y+LP L + + P + GP+ L+LAPTRELA QI ++ F+ IR C G
Sbjct: 308 ISYLLPLLRQVKAQRPLSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTG 367
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFL---ESGTTNVNRITYLVLDEADRMLDMGFEP 224
G+ Q DL RG EIVVATPGR ID L + + RIT++V+DEADR+ D+GFEP
Sbjct: 368 GSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEP 427
Query: 225 QIRKIIQMTRTRDLC 239
QI +I++ R C
Sbjct: 428 QITQIMKTVRPDKQC 442
Score = 165 (63.1 bits), Expect = 7.6e-23, Sum P(3) = 7.6e-23
Identities = 34/61 (55%), Positives = 44/61 (72%)
Query: 237 DLCRGAEIVVATPGRLIDFL---ESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
DL RG EIVVATPGR ID L + + RIT++V+DEADR+ D+GFEPQI +I++
Sbjct: 377 DLKRGTEIVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTV 436
Query: 294 R 294
R
Sbjct: 437 R 437
Score = 123 (48.4 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
IH K R L F+ ++L+ ++V SRGL+V ++ V+ Y+ YVH G
Sbjct: 555 IHAGKPYQERLMNLEKFKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTG 614
Query: 466 RTARSTKTGISYTL 479
RTAR +++G + TL
Sbjct: 615 RTARGSRSGTAITL 628
Score = 106 (42.4 bits), Expect = 4.8e-35, Sum P(3) = 4.8e-35
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLS 76
+G T IQ+Q+ P +SGRD+IGI++TGSGKT+S
Sbjct: 276 FGSLTPIQSQALPAIMSGRDVIGISKTGSGKTIS 309
Score = 105 (42.0 bits), Expect = 2.3e-16, Sum P(3) = 2.3e-16
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
IL + + RIT++V+DEADR+ D+GFEPQI +I++ R
Sbjct: 395 ILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVR 437
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 237 (88.5 bits), Expect = 4.8e-35, Sum P(2) = 4.8e-35
Identities = 49/120 (40%), Positives = 73/120 (60%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+ LP L +++ P L+L PTRELA Q+ + +S+ + +YGG
Sbjct: 55 FALPILQKMVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKV 114
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + L RGA+I+VATPGRL++ L + +++ + +LVLDEADRMLDMGF I+KI+Q
Sbjct: 115 ETQAQKLKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQ 174
Score = 212 (79.7 bits), Expect = 4.8e-35, Sum P(2) = 4.8e-35
Identities = 37/71 (52%), Positives = 57/71 (80%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+HG+K+Q +R + LR+F SG + VL+A++VA+RGLD+ ++YVVN+D P E+YVHRIG
Sbjct: 274 VHGEKAQGSRRRALREFVSGKVRVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIG 333
Query: 466 RTARSTKTGIS 476
RT R+ K+G++
Sbjct: 334 RTGRAGKSGVA 344
Score = 166 (63.5 bits), Expect = 4.6e-33, Sum P(3) = 4.6e-33
Identities = 32/59 (54%), Positives = 46/59 (77%)
Query: 233 TRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
T+ + L RGA+I+VATPGRL++ L + +++ + +LVLDEADRMLDMGF I+KI+Q
Sbjct: 116 TQAQKLKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQ 174
Score = 102 (41.0 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
+L L + +++ + +LVLDEADRMLDMGF I+KI+Q
Sbjct: 135 LLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQ 174
Score = 94 (38.1 bits), Expect = 4.6e-33, Sum P(3) = 4.6e-33
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT--LSLTIENTQVARGSQCGRSNT 95
GY K T IQ Q+ P G+D++ AQTG+GKT +L I V S+ +SNT
Sbjct: 20 GYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETLKSNT 75
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 234 (87.4 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 48/109 (44%), Positives = 71/109 (65%)
Query: 396 VSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD 455
+SS+ A+ IHG + Q R + LR FR+G VLIA+ VA RGLD++ + +V+NYD PD
Sbjct: 626 LSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPD 685
Query: 456 NTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPD 504
N ++Y+HRIGRT R +G + T F + + +L+ +L +A Q VPD
Sbjct: 686 NIDDYIHRIGRTGRVGNSGRA-TSFISEDCSLLSELVGVLADAQQIVPD 733
Score = 181 (68.8 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 45/124 (36%), Positives = 67/124 (54%)
Query: 112 YILPALYHILKMPKLEE-GDG---PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP + ++ L G+G P ++L PTRELA QI F+ + +YG
Sbjct: 395 FLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYG 454
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEPQI 226
G + Y + +GA I+V T GR+ F E GT +++ + VLDEADRM+D MGF I
Sbjct: 455 GLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDI 514
Query: 227 RKII 230
I+
Sbjct: 515 ETIV 518
Score = 121 (47.7 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKII 290
+GA I+V T GR+ F E GT +++ + VLDEADRM+D MGF I I+
Sbjct: 467 KGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIV 518
Score = 97 (39.2 bits), Expect = 3.3e-26, Sum P(3) = 3.3e-26
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKII 351
I HF E GT +++ + VLDEADRM+D MGF I I+
Sbjct: 479 IKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIV 518
Score = 87 (35.7 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
++GY K T IQ + P+ G D++ AQTGSGKT + +
Sbjct: 358 HAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLL 397
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 234 (87.4 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 48/109 (44%), Positives = 71/109 (65%)
Query: 396 VSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD 455
+SS+ A+ IHG + Q R + LR FR+G VLIA+ VA RGLD++ + +V+NYD PD
Sbjct: 626 LSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPD 685
Query: 456 NTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPD 504
N ++Y+HRIGRT R +G + T F + + +L+ +L +A Q VPD
Sbjct: 686 NIDDYIHRIGRTGRVGNSGRA-TSFISEDCSLLSELVGVLADAQQIVPD 733
Score = 181 (68.8 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 45/124 (36%), Positives = 67/124 (54%)
Query: 112 YILPALYHILKMPKLEE-GDG---PIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP + ++ L G+G P ++L PTRELA QI F+ + +YG
Sbjct: 395 FLLPIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYG 454
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEPQI 226
G + Y + +GA I+V T GR+ F E GT +++ + VLDEADRM+D MGF I
Sbjct: 455 GLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDI 514
Query: 227 RKII 230
I+
Sbjct: 515 ETIV 518
Score = 121 (47.7 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKII 290
+GA I+V T GR+ F E GT +++ + VLDEADRM+D MGF I I+
Sbjct: 467 KGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIV 518
Score = 97 (39.2 bits), Expect = 3.3e-26, Sum P(3) = 3.3e-26
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKII 351
I HF E GT +++ + VLDEADRM+D MGF I I+
Sbjct: 479 IKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIETIV 518
Score = 87 (35.7 bits), Expect = 6.6e-35, Sum P(3) = 6.6e-35
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
++GY K T IQ + P+ G D++ AQTGSGKT + +
Sbjct: 358 HAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLL 397
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 234 (87.4 bits), Expect = 7.0e-35, Sum P(2) = 7.0e-35
Identities = 52/121 (42%), Positives = 72/121 (59%)
Query: 112 YILPALYHILKMPKLEEGDGPI-ALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTS 170
Y LP + +L P+ G + LVLAPTRELA QI + RIR +YGG +
Sbjct: 55 YALPVIQKMLSTPR-----GRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVN 109
Query: 171 KMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
Q R L G ++VVA PGRL+D + GT ++ + L++DEADRM DMGF+P I+ I+
Sbjct: 110 MDQQIRRLRSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSIL 169
Query: 231 Q 231
+
Sbjct: 170 K 170
Score = 220 (82.5 bits), Expect = 7.0e-35, Sum P(2) = 7.0e-35
Identities = 42/113 (37%), Positives = 67/113 (59%)
Query: 388 GTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKY 447
G E +S + + + G+ SQ R + FR G +L+A+D+A+RGLD++ I +
Sbjct: 251 GAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLDIDHISH 310
Query: 448 VVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQ 500
V+NYD PD E+Y HRIGRT R +TG + +L T +G+ +D+ ++N Q
Sbjct: 311 VINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDIQKLINSPIQ 363
Score = 147 (56.8 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R L G ++VVA PGRL+D + GT ++ + L++DEADRM DMGF+P I+ I++
Sbjct: 115 RRLRSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQ 174
Query: 296 AH 297
H
Sbjct: 175 PH 176
Score = 115 (45.5 bits), Expect = 2.1e-33, Sum P(3) = 2.1e-33
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNT 95
GY +PT IQAQ+ P L G D+IG+AQTG+GKT + + Q + GR T
Sbjct: 20 GYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLSTPRGRVRT 73
Score = 95 (38.5 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
+L + GT ++ + L++DEADRM DMGF+P I+ I++
Sbjct: 131 LLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILK 170
>UNIPROTKB|J3KRZ1 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005516
"calmodulin binding" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0045069 "regulation of viral genome replication" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270
PROSITE:PS00039 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AC009994
HGNC:HGNC:2746 ChiTaRS:DDX5 Ensembl:ENST00000577787 Uniprot:J3KRZ1
Length = 166
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 74/108 (68%), Positives = 83/108 (76%)
Query: 127 EEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVV 186
E GDGPI LVLAPTRELAQQ+Q V + + R R++ C+YGG K Q RDL RG EI +
Sbjct: 1 ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICI 60
Query: 187 ATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 234
ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 61 ATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 108
Score = 233 (87.1 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 46/59 (77%), Positives = 49/59 (83%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 294
RDL RG EI +ATPGRLIDFLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 50 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 108
Score = 162 (62.1 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ FLE G TN+ R TYLVLDEADRMLDMGFEPQIRKI+ R
Sbjct: 66 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR 108
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 214 (80.4 bits), Expect = 8.8e-35, Sum P(3) = 8.8e-35
Identities = 45/118 (38%), Positives = 67/118 (56%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LPAL H++ P+ G + L+L PTRELA QI + + A + GG
Sbjct: 55 FLLPALQHLIDFPRRYSGQARV-LILTPTRELASQIHRYACHLATDQGLNIAIITGGVPY 113
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
Q L +I+VATPGRL+++L+ G + + L++DEADRMLDMGF ++ I
Sbjct: 114 APQEEALKGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAI 171
Score = 191 (72.3 bits), Expect = 8.8e-35, Sum P(3) = 8.8e-35
Identities = 34/74 (45%), Positives = 51/74 (68%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+ GD Q R Q L F G +NVL+A+DVA+RG+D++DI +V+N+D P + + Y+HRIG
Sbjct: 275 MRGDMEQKKRFQALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIG 334
Query: 466 RTARSTKTGISYTL 479
RT R+ G + +L
Sbjct: 335 RTGRAGAKGTAISL 348
Score = 130 (50.8 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 243 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 289
+I+VATPGRL+++L+ G + + L++DEADRMLDMGF ++ I
Sbjct: 125 DILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAI 171
Score = 89 (36.4 bits), Expect = 2.0e-21, Sum P(3) = 2.0e-21
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
++ +L+ G + + L++DEADRMLDMGF ++ I
Sbjct: 134 LMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAI 171
Score = 82 (33.9 bits), Expect = 8.8e-35, Sum P(3) = 8.8e-35
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
K G+ PT+IQ ++ P L RD++ A TG+GKT S + Q
Sbjct: 17 KAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQ 61
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 214 (80.4 bits), Expect = 8.8e-35, Sum P(3) = 8.8e-35
Identities = 45/118 (38%), Positives = 67/118 (56%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
++LPAL H++ P+ G + L+L PTRELA QI + + A + GG
Sbjct: 55 FLLPALQHLIDFPRRYSGQARV-LILTPTRELASQIHRYACHLATDQGLNIAIITGGVPY 113
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 229
Q L +I+VATPGRL+++L+ G + + L++DEADRMLDMGF ++ I
Sbjct: 114 APQEEALKGNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAI 171
Score = 191 (72.3 bits), Expect = 8.8e-35, Sum P(3) = 8.8e-35
Identities = 34/74 (45%), Positives = 51/74 (68%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
+ GD Q R Q L F G +NVL+A+DVA+RG+D++DI +V+N+D P + + Y+HRIG
Sbjct: 275 MRGDMEQKKRFQALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIG 334
Query: 466 RTARSTKTGISYTL 479
RT R+ G + +L
Sbjct: 335 RTGRAGAKGTAISL 348
Score = 130 (50.8 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 243 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 289
+I+VATPGRL+++L+ G + + L++DEADRMLDMGF ++ I
Sbjct: 125 DILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAI 171
Score = 89 (36.4 bits), Expect = 2.0e-21, Sum P(3) = 2.0e-21
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
++ +L+ G + + L++DEADRMLDMGF ++ I
Sbjct: 134 LMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAI 171
Score = 82 (33.9 bits), Expect = 8.8e-35, Sum P(3) = 8.8e-35
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
K G+ PT+IQ ++ P L RD++ A TG+GKT S + Q
Sbjct: 17 KAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQ 61
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 230 (86.0 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 50/121 (41%), Positives = 72/121 (59%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+ LP L + K K + G ALVL PTRELA Q+ + + + + +R A ++GG
Sbjct: 55 FTLPLLELLAKGHKAKSGQTR-ALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPI 113
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q L G +++VATPGRL+D ++ N++ LVLDEADRMLDMGF I+KI+
Sbjct: 114 NPQINKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILA 173
Query: 232 M 232
+
Sbjct: 174 L 174
Score = 221 (82.9 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
Identities = 47/124 (37%), Positives = 72/124 (58%)
Query: 377 ERW----VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIA 432
E W VF H + + + A IHG+KSQ R + L DF+SG + VL+A
Sbjct: 241 ENWQQVLVFSRTKHGANRLAKSLIQAEI-SAAAIHGNKSQGARTKALADFKSGEVRVLVA 299
Query: 433 SDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLI 492
+D+A+RGLD++ + VVN+D P+ E+YVHRIGRT R+ TG + +L + +D+
Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIE 359
Query: 493 DILN 496
++N
Sbjct: 360 RLIN 363
Score = 148 (57.2 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 292
L G +++VATPGRL+D ++ N++ LVLDEADRMLDMGF I+KI+ +
Sbjct: 120 LRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILAL 174
Score = 105 (42.0 bits), Expect = 1.0e-32, Sum P(3) = 1.0e-32
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQV-ARGSQCGRSNT 95
GY P+ IQAQ+ P L+G+D++ AQTG+GKT T+ ++ A+G + T
Sbjct: 20 GYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLAKGHKAKSGQT 74
Score = 100 (40.3 bits), Expect = 9.6e-28, Sum P(3) = 9.6e-28
Identities = 32/86 (37%), Positives = 43/86 (50%)
Query: 268 YLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRI 327
YL L A + PQI K+ RH V L + R +L ++ N++
Sbjct: 99 YLPLRSAVVFGGVPINPQINKL----RHGVDV----LVATPGR--LLDLVQQNAVKFNQL 148
Query: 328 TYLVLDEADRMLDMGFEPQIRKIIQM 353
LVLDEADRMLDMGF I+KI+ +
Sbjct: 149 EILVLDEADRMLDMGFIRDIKKILAL 174
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 330 (121.2 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 100/302 (33%), Positives = 154/302 (50%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM-------- 292
G EIV+ATPGRLID LE+ +N+ TY+VLDEADRM+DMGFEP ++KI++
Sbjct: 521 GCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQKILEYMPVTNLKP 580
Query: 293 -TRHAHPVVPV--SLFISER-RDTILHFLESGTTNVNRI--TYLVLDEADRMLDMGFEPQ 346
T A + + + ++ R T++ F + V R+ TYL + +G +P
Sbjct: 581 DTEEAEDETKLMENFYTKKKYRQTVM-FTATMPPAVERLARTYLRRPATVYIGSVG-KPT 638
Query: 347 IR--KIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHN-GTETKHYGVSSSLYRA 403
R +I+ M N IL I+ V + +N G + G+ Y +
Sbjct: 639 ERTEQIVYMMGEND-----KRKKLMEILSRKIDPPVIIFVNQKKGADVLAKGLEKLGYNS 693
Query: 404 MGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHR 463
+HG K Q R+ L +SG ++L+A+DVA RG+D++D+ V+NYD E+Y HR
Sbjct: 694 CTLHGGKGQEQREYALAALKSGAKDILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHR 753
Query: 464 IGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFV--PDRLLLLAAKNKPITTRQW 521
IGRT R+ KTG + + T + DL ++ + P+ + A++KP T
Sbjct: 754 IGRTGRAGKTGCAISFVTKDDSALFYDLKQCVSASPVSTCPPELMNHPEAQHKPGTVVTK 813
Query: 522 KR 523
KR
Sbjct: 814 KR 815
Score = 288 (106.4 bits), Expect = 1.3e-29, Sum P(2) = 1.3e-29
Identities = 62/124 (50%), Positives = 86/124 (69%)
Query: 112 YILPALYHILKMPK---LEEGD-GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
+++P L I +PK LE+ D GP A+++APTRELAQQI+ + F + + IR + G
Sbjct: 448 FLIPLLSWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFGQPLGIRTVVVVG 507
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
G S+ Q L G EIV+ATPGRLID LE+ +N+ TY+VLDEADRM+DMGFEP ++
Sbjct: 508 GLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEADRMIDMGFEPDVQ 567
Query: 228 KIIQ 231
KI++
Sbjct: 568 KILE 571
Score = 117 (46.2 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY +PT IQ Q+ PI L RD+IG+A+TGSGKTL+ I
Sbjct: 413 GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLI 450
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 198 (74.8 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 38/94 (40%), Positives = 59/94 (62%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y A+ IHGD Q RD+ L F + +VL+A+DVA+RGLD++++ V+NY+ N E +
Sbjct: 267 YAALAIHGDLDQRERDRVLVRFANRSASVLVATDVAARGLDIKELSAVINYELTRNPEVH 326
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDI 494
HRIGRT R+ + G++ +L TP + D+
Sbjct: 327 THRIGRTGRAGERGLAVSLVTPRESRLIAAIADV 360
Score = 194 (73.4 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 45/98 (45%), Positives = 60/98 (61%)
Query: 134 ALVLAPTRELAQQIQAVISIFSR-TMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRL 192
ALVL PTRELA Q+ + +R T I+ + GG Q L GA +V+ TPGRL
Sbjct: 75 ALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSLEHGAHVVIGTPGRL 134
Query: 193 IDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
+D L G+ +++ + LVLDEADRMLDMGF+ I +I
Sbjct: 135 LDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALI 172
Score = 144 (55.7 bits), Expect = 2.7e-29, Sum P(3) = 2.7e-29
Identities = 33/73 (45%), Positives = 45/73 (61%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVV 300
GA +V+ TPGRL+D L G+ +++ + LVLDEADRMLDMGF+ I +I A P
Sbjct: 123 GAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAA---APPKR 179
Query: 301 PVSLFISERRDTI 313
LF + D+I
Sbjct: 180 QTLLFSATYPDSI 192
Score = 98 (39.6 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
GY + T IQA S P+ L+G+D+I A+TGSGKT + I
Sbjct: 23 GYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAFGI 60
Score = 93 (37.8 bits), Expect = 5.0e-24, Sum P(3) = 5.0e-24
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
+L L G+ +++ + LVLDEADRMLDMGF+ I +I
Sbjct: 134 LLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALI 172
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 343 (125.8 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 94/279 (33%), Positives = 142/279 (50%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
R + +G I+ ATPGRL+D + + +I YLVLDEADRMLDMGF P+++K+I
Sbjct: 388 RQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMGFGPEMKKLISFPGM 447
Query: 296 AHPVVPVSLFISER------RDTILHFLESGT---TNVNRITYLVLDEADRMLDMGFEPQ 346
+L S +D FL++ T V ++ D +L +G +
Sbjct: 448 PSKEQRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQVGGACSDVQQTVLQVGQYSK 507
Query: 347 IRKIIQMTRFNTCVFLGYVLYFWFILVAGIER-WVFMEINHNGTETKHYGVSSSLYRAMG 405
K++++ R N G ER VF+E + +
Sbjct: 508 REKLVEILR-NI----------------GEERTMVFVETKKKADFIATFLCQEKI-STTS 549
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
IHGD+ Q R+Q L DFR G VL+A+ VA+RGLD+E++++V+N+D P + YVHRIG
Sbjct: 550 IHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIG 609
Query: 466 RTARSTKTGISYTLFTPL-NGNKAQDLIDILNEAHQFVP 503
RT R TG + + F P + + AQ L+ +L++A Q P
Sbjct: 610 RTGRCGNTGKAISFFDPEPDSHLAQPLVKVLSDAQQGCP 648
Score = 233 (87.1 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 49/123 (39%), Positives = 74/123 (60%)
Query: 112 YILPALYHILK----MPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYG 167
++LP L H+++ + ++ P +++APTREL QI FS +R +YG
Sbjct: 320 FLLPILAHMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGTCVRPVVIYG 379
Query: 168 GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIR 227
GT + R + +G I+ ATPGRL+D + + +I YLVLDEADRMLDMGF P+++
Sbjct: 380 GTQLGHSIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMGFGPEMK 439
Query: 228 KII 230
K+I
Sbjct: 440 KLI 442
Score = 98 (39.6 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+GY K T +Q PI L+GRDL+ AQTGSGKT + +
Sbjct: 284 AGYTKLTPVQKYGIPIILAGRDLMACAQTGSGKTAAFLL 322
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 320 (117.7 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 86/249 (34%), Positives = 129/249 (51%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAH 297
+C+GA+I+VATPGRL+D +++ LVLDEADRMLDMGF I KI+++
Sbjct: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLL---- 175
Query: 298 PVVPVSLFISERRDTILHFLESGTTNVNRITYLV--LDEADRMLDMGFEP-QIRKIIQMT 354
P +L S T + L G N N + V + R ++ P ++K M
Sbjct: 176 PEKRQNLLFSATFSTEIRELAKGLVN-NPVEISVSPANSTARTVEQCIYPADVKKKPDM- 233
Query: 355 RFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414
V G W ++ VFM H Y L A IHG+KSQ
Sbjct: 234 -LVKLVKEGN----WQQVL------VFMRTKHGANRLATYLNEQGL-TAAAIHGNKSQGA 281
Query: 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
R + L DF++G + +L+A+D+A+RG+D+ + VVN++ P E+YVHRIGRT R+ + G
Sbjct: 282 RTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVG 341
Query: 475 ISYTLFTPL 483
+ +L + +
Sbjct: 342 KAISLVSAI 350
Score = 247 (92.0 bits), Expect = 3.5e-18, P = 3.5e-18
Identities = 52/121 (42%), Positives = 76/121 (62%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+ LP L + K PK+ AL+L PTRELA QIQ + ++ R + ++ A ++GG
Sbjct: 55 FTLPILELLAKGPKVRANQVR-ALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKI 113
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + +C+GA+I+VATPGRL+D +++ LVLDEADRMLDMGF I KI++
Sbjct: 114 NPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILK 173
Query: 232 M 232
+
Sbjct: 174 L 174
Score = 102 (41.0 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQV-ARGSQCGRSN 94
+ GY P+ IQ Q+ P L+G+D++ AQTG+GKT T+ ++ A+G + R+N
Sbjct: 17 EEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKV-RAN 72
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 320 (117.7 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 86/249 (34%), Positives = 129/249 (51%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAH 297
+C+GA+I+VATPGRL+D +++ LVLDEADRMLDMGF I KI+++
Sbjct: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLL---- 175
Query: 298 PVVPVSLFISERRDTILHFLESGTTNVNRITYLV--LDEADRMLDMGFEP-QIRKIIQMT 354
P +L S T + L G N N + V + R ++ P ++K M
Sbjct: 176 PEKRQNLLFSATFSTEIRELAKGLVN-NPVEISVSPANSTARTVEQCIYPADVKKKPDM- 233
Query: 355 RFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWN 414
V G W ++ VFM H Y L A IHG+KSQ
Sbjct: 234 -LVKLVKEGN----WQQVL------VFMRTKHGANRLATYLNEQGL-TAAAIHGNKSQGA 281
Query: 415 RDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTG 474
R + L DF++G + +L+A+D+A+RG+D+ + VVN++ P E+YVHRIGRT R+ + G
Sbjct: 282 RTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVG 341
Query: 475 ISYTLFTPL 483
+ +L + +
Sbjct: 342 KAISLVSAI 350
Score = 247 (92.0 bits), Expect = 3.5e-18, P = 3.5e-18
Identities = 52/121 (42%), Positives = 76/121 (62%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+ LP L + K PK+ AL+L PTRELA QIQ + ++ R + ++ A ++GG
Sbjct: 55 FTLPILELLAKGPKVRANQVR-ALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKI 113
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q + +C+GA+I+VATPGRL+D +++ LVLDEADRMLDMGF I KI++
Sbjct: 114 NPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILK 173
Query: 232 M 232
+
Sbjct: 174 L 174
Score = 102 (41.0 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQV-ARGSQCGRSN 94
+ GY P+ IQ Q+ P L+G+D++ AQTG+GKT T+ ++ A+G + R+N
Sbjct: 17 EEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKV-RAN 72
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 207 (77.9 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 39/103 (37%), Positives = 59/103 (57%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q RD +R+FRSG VLI +D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 302 FTVSALHGDMDQKERDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 361
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVP 503
+HRIGR R + G++ T + +D+ N + +P
Sbjct: 362 IHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMP 404
Score = 193 (73.0 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 53/118 (44%), Positives = 66/118 (55%)
Query: 120 ILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDL 178
IL+ ++E+ + ALVLAPTRELAQQIQ VI M HAC+ GGT+ + + L
Sbjct: 95 ILQQLEIEQKETQ-ALVLAPTRELAQQIQKVILALGDYMGASCHACI-GGTNVRNEMQKL 152
Query: 179 -CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT 235
IVV TPGR+ D L + I VLDEAD ML GF+ QI +I Q T
Sbjct: 153 QAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLST 210
Score = 104 (41.7 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
Identities = 24/48 (50%), Positives = 28/48 (58%)
Query: 244 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
IVV TPGR+ D L + I VLDEAD ML GF+ QI +I Q
Sbjct: 159 IVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 206
Score = 83 (34.3 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ KP++IQ ++ C+ G D+I AQ+G+GKT + I Q
Sbjct: 56 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 97
Score = 72 (30.4 bits), Expect = 8.6e-22, Sum P(3) = 8.6e-22
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 327 ITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFL 362
I VLDEAD ML GF+ QI +I Q N V L
Sbjct: 181 IKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVL 216
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 265 (98.3 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 74/241 (30%), Positives = 116/241 (48%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVV 300
G ++VV TPGR+ D ++ + + VLDEAD ML GF QI I Q+ + VV
Sbjct: 141 GPQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVV 200
Query: 301 PVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV 360
+S + + D LE TT R +L + D + G + Q ++ +
Sbjct: 201 LLSATMPQ--DV----LEV-TTKFMRDPVRILVKKDELTLEGIK-QFYIAVEKEEWKLDT 252
Query: 361 FLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLR 420
LY + + +F + +++ + +HGD Q RD ++
Sbjct: 253 LSD--LYETVTITQAV---IFCNTRRK-VDWLTDKLTARDFTVSAMHGDMDQAQRDLIMK 306
Query: 421 DFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLF 480
+FRSG VLIA+D+ +RG+DV+ + V+NYD P N ENY+HRIGR R + G++
Sbjct: 307 EFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFV 366
Query: 481 T 481
T
Sbjct: 367 T 367
Score = 204 (76.9 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 41/101 (40%), Positives = 60/101 (59%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q RD +++FRSG VLIA+D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 287 FTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENY 346
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQF 501
+HRIGR R + G++ T A D + ++ E QF
Sbjct: 347 IHRIGRGGRFGRKGVAINFVT------ADD-VRMMREIEQF 380
Score = 204 (76.9 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 57/145 (39%), Positives = 77/145 (53%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDLCRGAEIVVATPGRL 192
AL+LAPTRELAQQIQ V+ M I HAC+ GGTS + L G ++VV TPGR+
Sbjct: 94 ALILAPTRELAQQIQKVVVAIGDFMNIECHACI-GGTSVRDDMKALQDGPQVVVGTPGRV 152
Query: 193 IDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRL 252
D ++ + + VLDEAD ML GF QI I Q+ L + ++V+ +
Sbjct: 153 HDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYDIFQL-----LPQSTQVVLLSATMP 207
Query: 253 IDFLESGTTNVNRITYLVLDEADRM 277
D LE TT R +L + D +
Sbjct: 208 QDVLEV-TTKFMRDPVRILVKKDEL 231
Score = 74 (31.1 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ +P++IQ ++ + G D+I AQ+G+GKT + +I Q
Sbjct: 42 GFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQ 83
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 212 (79.7 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 39/103 (37%), Positives = 61/103 (59%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q RD +R+FRSG VLI +D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 292 FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 351
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVP 503
+HRIGR R + G++ + T + +D+ N + + +P
Sbjct: 352 IHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMP 394
Score = 185 (70.2 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 48/100 (48%), Positives = 57/100 (57%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDLCRGA-EIVVATPGR 191
ALVLAPTRELAQQIQ V+ M HAC+ GGT+ + + L A I+V TPGR
Sbjct: 103 ALVLAPTRELAQQIQKVVMALGDYMGASCHACI-GGTNVRAEVQKLQMEAPHIIVGTPGR 161
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
+ D L + I VLDEAD ML GF+ QI I Q
Sbjct: 162 VFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 201
Score = 104 (41.7 bits), Expect = 8.0e-26, Sum P(3) = 8.0e-26
Identities = 26/60 (43%), Positives = 31/60 (51%)
Query: 244 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVS 303
I+V TPGR+ D L + I VLDEAD ML GF+ QI I Q VV +S
Sbjct: 154 IIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLS 213
Score = 83 (34.3 bits), Expect = 3.3e-34, Sum P(3) = 3.3e-34
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ KP++IQ ++ C+ G D+I AQ+G+GKT + I Q
Sbjct: 51 GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 92
Score = 77 (32.2 bits), Expect = 4.9e-23, Sum P(3) = 4.9e-23
Identities = 19/36 (52%), Positives = 20/36 (55%)
Query: 327 ITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFL 362
I VLDEAD ML GF+ QI I Q NT V L
Sbjct: 176 IKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 211
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 208 (78.3 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 39/103 (37%), Positives = 59/103 (57%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q RD +R+FRSG VLI +D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 298 FTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 357
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVP 503
+HRIGR R + G++ T + +D+ N + +P
Sbjct: 358 IHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMP 400
Score = 190 (71.9 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 50/104 (48%), Positives = 58/104 (55%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDL-CRGAEIVVATPGR 191
ALVLAPTRELAQQIQ VI M HAC+ GGT+ + + L IVV TPGR
Sbjct: 104 ALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGR 162
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT 235
+ D L + I VLDEAD ML GF+ QI +I Q T
Sbjct: 163 VFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 206
Score = 107 (42.7 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 27/60 (45%), Positives = 33/60 (55%)
Query: 244 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVS 303
IVV TPGR+ D L + I VLDEAD ML GF+ QI +I Q + VV +S
Sbjct: 155 IVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLS 214
Score = 83 (34.3 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ KP++IQ ++ C+ G D+I AQ+G+GKT + I Q
Sbjct: 52 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Score = 72 (30.4 bits), Expect = 6.0e-22, Sum P(3) = 6.0e-22
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 327 ITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV 360
I VLDEAD ML GF+ QI +I Q + NT +
Sbjct: 177 IKMFVLDEADEMLSRGFKDQIYEIFQ--KLNTSI 208
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 208 (78.3 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 39/103 (37%), Positives = 59/103 (57%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q RD +R+FRSG VLI +D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 298 FTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 357
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVP 503
+HRIGR R + G++ T + +D+ N + +P
Sbjct: 358 IHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMP 400
Score = 190 (71.9 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 50/104 (48%), Positives = 58/104 (55%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDL-CRGAEIVVATPGR 191
ALVLAPTRELAQQIQ VI M HAC+ GGT+ + + L IVV TPGR
Sbjct: 104 ALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGR 162
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT 235
+ D L + I VLDEAD ML GF+ QI +I Q T
Sbjct: 163 VFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 206
Score = 107 (42.7 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 27/60 (45%), Positives = 33/60 (55%)
Query: 244 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVS 303
IVV TPGR+ D L + I VLDEAD ML GF+ QI +I Q + VV +S
Sbjct: 155 IVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLS 214
Score = 83 (34.3 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ KP++IQ ++ C+ G D+I AQ+G+GKT + I Q
Sbjct: 52 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Score = 72 (30.4 bits), Expect = 6.0e-22, Sum P(3) = 6.0e-22
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 327 ITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV 360
I VLDEAD ML GF+ QI +I Q + NT +
Sbjct: 177 IKMFVLDEADEMLSRGFKDQIYEIFQ--KLNTSI 208
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 208 (78.3 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 39/103 (37%), Positives = 59/103 (57%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q RD +R+FRSG VLI +D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 298 FTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 357
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVP 503
+HRIGR R + G++ T + +D+ N + +P
Sbjct: 358 IHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMP 400
Score = 190 (71.9 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 50/104 (48%), Positives = 58/104 (55%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDL-CRGAEIVVATPGR 191
ALVLAPTRELAQQIQ VI M HAC+ GGT+ + + L IVV TPGR
Sbjct: 104 ALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGR 162
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT 235
+ D L + I VLDEAD ML GF+ QI +I Q T
Sbjct: 163 VFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 206
Score = 107 (42.7 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 27/60 (45%), Positives = 33/60 (55%)
Query: 244 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVS 303
IVV TPGR+ D L + I VLDEAD ML GF+ QI +I Q + VV +S
Sbjct: 155 IVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLS 214
Score = 83 (34.3 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ KP++IQ ++ C+ G D+I AQ+G+GKT + I Q
Sbjct: 52 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Score = 72 (30.4 bits), Expect = 6.0e-22, Sum P(3) = 6.0e-22
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 327 ITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV 360
I VLDEAD ML GF+ QI +I Q + NT +
Sbjct: 177 IKMFVLDEADEMLSRGFKDQIYEIFQ--KLNTSI 208
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 208 (78.3 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 39/103 (37%), Positives = 59/103 (57%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q RD +R+FRSG VLI +D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 298 FTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 357
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVP 503
+HRIGR R + G++ T + +D+ N + +P
Sbjct: 358 IHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMP 400
Score = 190 (71.9 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 50/104 (48%), Positives = 58/104 (55%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDL-CRGAEIVVATPGR 191
ALVLAPTRELAQQIQ VI M HAC+ GGT+ + + L IVV TPGR
Sbjct: 104 ALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGR 162
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT 235
+ D L + I VLDEAD ML GF+ QI +I Q T
Sbjct: 163 VFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 206
Score = 107 (42.7 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 27/60 (45%), Positives = 33/60 (55%)
Query: 244 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVS 303
IVV TPGR+ D L + I VLDEAD ML GF+ QI +I Q + VV +S
Sbjct: 155 IVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLS 214
Score = 83 (34.3 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ KP++IQ ++ C+ G D+I AQ+G+GKT + I Q
Sbjct: 52 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Score = 72 (30.4 bits), Expect = 6.0e-22, Sum P(3) = 6.0e-22
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 327 ITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV 360
I VLDEAD ML GF+ QI +I Q + NT +
Sbjct: 177 IKMFVLDEADEMLSRGFKDQIYEIFQ--KLNTSI 208
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 208 (78.3 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 39/103 (37%), Positives = 59/103 (57%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q RD +R+FRSG VLI +D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 298 FTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 357
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVP 503
+HRIGR R + G++ T + +D+ N + +P
Sbjct: 358 IHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMP 400
Score = 190 (71.9 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 50/104 (48%), Positives = 58/104 (55%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDL-CRGAEIVVATPGR 191
ALVLAPTRELAQQIQ VI M HAC+ GGT+ + + L IVV TPGR
Sbjct: 104 ALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGR 162
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT 235
+ D L + I VLDEAD ML GF+ QI +I Q T
Sbjct: 163 VFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 206
Score = 107 (42.7 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 27/60 (45%), Positives = 33/60 (55%)
Query: 244 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVS 303
IVV TPGR+ D L + I VLDEAD ML GF+ QI +I Q + VV +S
Sbjct: 155 IVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLS 214
Score = 83 (34.3 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ KP++IQ ++ C+ G D+I AQ+G+GKT + I Q
Sbjct: 52 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Score = 72 (30.4 bits), Expect = 6.0e-22, Sum P(3) = 6.0e-22
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 327 ITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV 360
I VLDEAD ML GF+ QI +I Q + NT +
Sbjct: 177 IKMFVLDEADEMLSRGFKDQIYEIFQ--KLNTSI 208
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 208 (78.3 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 39/103 (37%), Positives = 59/103 (57%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q RD +R+FRSG VLI +D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 298 FTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 357
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVP 503
+HRIGR R + G++ T + +D+ N + +P
Sbjct: 358 IHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMP 400
Score = 190 (71.9 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 50/104 (48%), Positives = 58/104 (55%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDL-CRGAEIVVATPGR 191
ALVLAPTRELAQQIQ VI M HAC+ GGT+ + + L IVV TPGR
Sbjct: 104 ALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGR 162
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT 235
+ D L + I VLDEAD ML GF+ QI +I Q T
Sbjct: 163 VFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 206
Score = 107 (42.7 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 27/60 (45%), Positives = 33/60 (55%)
Query: 244 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVS 303
IVV TPGR+ D L + I VLDEAD ML GF+ QI +I Q + VV +S
Sbjct: 155 IVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLS 214
Score = 83 (34.3 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ KP++IQ ++ C+ G D+I AQ+G+GKT + I Q
Sbjct: 52 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Score = 72 (30.4 bits), Expect = 6.0e-22, Sum P(3) = 6.0e-22
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 327 ITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV 360
I VLDEAD ML GF+ QI +I Q + NT +
Sbjct: 177 IKMFVLDEADEMLSRGFKDQIYEIFQ--KLNTSI 208
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 208 (78.3 bits), Expect = 3.8e-34, Sum P(3) = 3.8e-34
Identities = 39/103 (37%), Positives = 59/103 (57%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q RD +R+FRSG VLI +D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 299 FTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 358
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVP 503
+HRIGR R + G++ T + +D+ N + +P
Sbjct: 359 IHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMP 401
Score = 190 (71.9 bits), Expect = 3.8e-34, Sum P(3) = 3.8e-34
Identities = 50/104 (48%), Positives = 58/104 (55%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDL-CRGAEIVVATPGR 191
ALVLAPTRELAQQIQ VI M HAC+ GGT+ + + L IVV TPGR
Sbjct: 105 ALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGR 163
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT 235
+ D L + I VLDEAD ML GF+ QI +I Q T
Sbjct: 164 VFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNT 207
Score = 107 (42.7 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 27/60 (45%), Positives = 33/60 (55%)
Query: 244 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVS 303
IVV TPGR+ D L + I VLDEAD ML GF+ QI +I Q + VV +S
Sbjct: 156 IVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLS 215
Score = 83 (34.3 bits), Expect = 3.8e-34, Sum P(3) = 3.8e-34
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ KP++IQ ++ C+ G D+I AQ+G+GKT + I Q
Sbjct: 53 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 94
Score = 72 (30.4 bits), Expect = 6.1e-22, Sum P(3) = 6.1e-22
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 327 ITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV 360
I VLDEAD ML GF+ QI +I Q + NT +
Sbjct: 178 IKMFVLDEADEMLSRGFKDQIYEIFQ--KLNTSI 209
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 211 (79.3 bits), Expect = 4.0e-34, Sum P(3) = 4.0e-34
Identities = 47/110 (42%), Positives = 69/110 (62%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ + +HGD Q +RDQTL F + ++L+A+DVA+RGLD++ + V+NY ++E +
Sbjct: 274 FSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEVH 333
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLA 510
VHRIGRT R+ TGI+Y+LF+ K L D L EA P+ L LA
Sbjct: 334 VHRIGRTGRAGSTGIAYSLFSDKESYKVGLLEDYL-EA-VITPEPLPSLA 381
Score = 182 (69.1 bits), Expect = 4.0e-34, Sum P(3) = 4.0e-34
Identities = 46/120 (38%), Positives = 68/120 (56%)
Query: 116 ALYHILKMPKLEEGDGPI-ALVLAPTRELAQQIQAVISIFSRTMR-IRHACLYGGTSKMY 173
A + + + KLE I ++V+ PTRELA Q+ + +R + I+ L GGT
Sbjct: 62 AAFGLALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGP 121
Query: 174 QTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 233
Q L GA ++V TPGRL + + GT ++ + LVLDEADRML+MGF+ + I+ T
Sbjct: 122 QIGSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRT 181
Score = 131 (51.2 bits), Expect = 7.8e-29, Sum P(3) = 7.8e-29
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
GA ++V TPGRL + + GT ++ + LVLDEADRML+MGF+ + I+ T
Sbjct: 129 GAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRT 181
Score = 92 (37.4 bits), Expect = 4.0e-34, Sum P(3) = 4.0e-34
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
GY + T IQA++ P L G+D+IG A+TGSGKT
Sbjct: 29 GYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKT 61
Score = 89 (36.4 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 315 HFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 354
H ++ GT ++ + LVLDEADRML+MGF+ + I+ T
Sbjct: 143 HVIK-GTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRT 181
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 211 (79.3 bits), Expect = 4.0e-34, Sum P(3) = 4.0e-34
Identities = 47/110 (42%), Positives = 69/110 (62%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ + +HGD Q +RDQTL F + ++L+A+DVA+RGLD++ + V+NY ++E +
Sbjct: 274 FSVLALHGDLEQRDRDQTLLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEVH 333
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLA 510
VHRIGRT R+ TGI+Y+LF+ K L D L EA P+ L LA
Sbjct: 334 VHRIGRTGRAGSTGIAYSLFSDKESYKVGLLEDYL-EA-VITPEPLPSLA 381
Score = 182 (69.1 bits), Expect = 4.0e-34, Sum P(3) = 4.0e-34
Identities = 46/120 (38%), Positives = 68/120 (56%)
Query: 116 ALYHILKMPKLEEGDGPI-ALVLAPTRELAQQIQAVISIFSRTMR-IRHACLYGGTSKMY 173
A + + + KLE I ++V+ PTRELA Q+ + +R + I+ L GGT
Sbjct: 62 AAFGLALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGP 121
Query: 174 QTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 233
Q L GA ++V TPGRL + + GT ++ + LVLDEADRML+MGF+ + I+ T
Sbjct: 122 QIGSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRT 181
Score = 131 (51.2 bits), Expect = 7.8e-29, Sum P(3) = 7.8e-29
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
GA ++V TPGRL + + GT ++ + LVLDEADRML+MGF+ + I+ T
Sbjct: 129 GAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRT 181
Score = 92 (37.4 bits), Expect = 4.0e-34, Sum P(3) = 4.0e-34
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
GY + T IQA++ P L G+D+IG A+TGSGKT
Sbjct: 29 GYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKT 61
Score = 89 (36.4 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 315 HFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 354
H ++ GT ++ + LVLDEADRML+MGF+ + I+ T
Sbjct: 143 HVIK-GTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRT 181
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 208 (78.3 bits), Expect = 4.7e-34, Sum P(3) = 4.7e-34
Identities = 39/103 (37%), Positives = 59/103 (57%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q RD +R+FRSG VLI +D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 298 FTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENY 357
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVP 503
+HRIGR R + G++ T + +D+ N + +P
Sbjct: 358 IHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMP 400
Score = 189 (71.6 bits), Expect = 4.7e-34, Sum P(3) = 4.7e-34
Identities = 50/104 (48%), Positives = 58/104 (55%)
Query: 134 ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDL-CRGAEIVVATPGR 191
ALVLAPTRELAQQIQ VI M HAC+ GGT+ + + L IVV TPGR
Sbjct: 104 ALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGR 162
Query: 192 LIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRT 235
+ D L + I VLDEAD ML GF+ QI +I Q T
Sbjct: 163 VFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLST 206
Score = 104 (41.7 bits), Expect = 3.0e-25, Sum P(3) = 3.0e-25
Identities = 24/48 (50%), Positives = 28/48 (58%)
Query: 244 IVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
IVV TPGR+ D L + I VLDEAD ML GF+ QI +I Q
Sbjct: 155 IVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 202
Score = 83 (34.3 bits), Expect = 4.7e-34, Sum P(3) = 4.7e-34
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ KP++IQ ++ C+ G D+I AQ+G+GKT + I Q
Sbjct: 52 GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Score = 72 (30.4 bits), Expect = 6.0e-22, Sum P(3) = 6.0e-22
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 327 ITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFL 362
I VLDEAD ML GF+ QI +I Q N V L
Sbjct: 177 IKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVL 212
>GENEDB_PFALCIPARUM|PFE0215w [details] [associations]
symbol:PFE0215w "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 265 (98.3 bits), Expect = 5.2e-34, Sum P(2) = 5.2e-34
Identities = 70/200 (35%), Positives = 100/200 (50%)
Query: 37 LGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLT---IENTQVARGS--QCG 91
L G T IQ+QS+ G+D+IG ++TGSGKTL+ +E + S +
Sbjct: 157 LENKKGIKYMTKIQSQSFKPIYEGKDIIGRSETGSGKTLAFALPLVEKLYKMKTSNEKFE 216
Query: 92 RSNTSKEESSWWN-NNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 150
N S EE N + VD + K E P LVL PTREL++Q++
Sbjct: 217 EENGSHEEDQKKNIYDDVDNDNNYDNFSYGKKYQNREHNKDPSILVLEPTRELSKQVENT 276
Query: 151 ISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLV 210
S+ +YGG S YQ L +G +I+ TPGR+ID +E ++ I Y+V
Sbjct: 277 FKEISQFYNFNIMSIYGGESYTYQENKLRKGIDILTGTPGRIIDHIEKKNLSLQNIKYVV 336
Query: 211 LDEADRMLDMGFEPQIRKII 230
LDEAD ML++GF I +I+
Sbjct: 337 LDEADEMLNLGFTHDIERIL 356
Score = 183 (69.5 bits), Expect = 5.2e-34, Sum P(2) = 5.2e-34
Identities = 44/101 (43%), Positives = 64/101 (63%)
Query: 395 GVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFP 454
G SL A+ +HG+ +Q R+ T++ FR G +LIA+D+ASRGLD+ ++ V+ FP
Sbjct: 452 GSFKSLSFAV-LHGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQC-FP 509
Query: 455 DN-TENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDI 494
N + Y+HR GRT R+ K G S L++ N +K QDLI I
Sbjct: 510 PNYSAVYIHRAGRTGRANKKGTSLVLYS--NEDK-QDLIKI 547
Score = 128 (50.1 bits), Expect = 4.7e-19, Sum P(2) = 4.7e-19
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
L +G +I+ TPGR+ID +E ++ I Y+VLDEAD ML++GF I +I+
Sbjct: 304 LRKGIDILTGTPGRIIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERIL 356
Score = 83 (34.3 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
I+ +E ++ I Y+VLDEAD ML++GF I +I+
Sbjct: 318 IIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERIL 356
>UNIPROTKB|Q8I457 [details] [associations]
symbol:PFE0215w "ATP-dependent helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 265 (98.3 bits), Expect = 5.2e-34, Sum P(2) = 5.2e-34
Identities = 70/200 (35%), Positives = 100/200 (50%)
Query: 37 LGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLT---IENTQVARGS--QCG 91
L G T IQ+QS+ G+D+IG ++TGSGKTL+ +E + S +
Sbjct: 157 LENKKGIKYMTKIQSQSFKPIYEGKDIIGRSETGSGKTLAFALPLVEKLYKMKTSNEKFE 216
Query: 92 RSNTSKEESSWWN-NNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAV 150
N S EE N + VD + K E P LVL PTREL++Q++
Sbjct: 217 EENGSHEEDQKKNIYDDVDNDNNYDNFSYGKKYQNREHNKDPSILVLEPTRELSKQVENT 276
Query: 151 ISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLV 210
S+ +YGG S YQ L +G +I+ TPGR+ID +E ++ I Y+V
Sbjct: 277 FKEISQFYNFNIMSIYGGESYTYQENKLRKGIDILTGTPGRIIDHIEKKNLSLQNIKYVV 336
Query: 211 LDEADRMLDMGFEPQIRKII 230
LDEAD ML++GF I +I+
Sbjct: 337 LDEADEMLNLGFTHDIERIL 356
Score = 183 (69.5 bits), Expect = 5.2e-34, Sum P(2) = 5.2e-34
Identities = 44/101 (43%), Positives = 64/101 (63%)
Query: 395 GVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFP 454
G SL A+ +HG+ +Q R+ T++ FR G +LIA+D+ASRGLD+ ++ V+ FP
Sbjct: 452 GSFKSLSFAV-LHGNIAQSTREYTMQRFRQGMFQILIATDIASRGLDISNVDLVIQC-FP 509
Query: 455 DN-TENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDI 494
N + Y+HR GRT R+ K G S L++ N +K QDLI I
Sbjct: 510 PNYSAVYIHRAGRTGRANKKGTSLVLYS--NEDK-QDLIKI 547
Score = 128 (50.1 bits), Expect = 4.7e-19, Sum P(2) = 4.7e-19
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
L +G +I+ TPGR+ID +E ++ I Y+VLDEAD ML++GF I +I+
Sbjct: 304 LRKGIDILTGTPGRIIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERIL 356
Score = 83 (34.3 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
I+ +E ++ I Y+VLDEAD ML++GF I +I+
Sbjct: 318 IIDHIEKKNLSLQNIKYVVLDEADEMLNLGFTHDIERIL 356
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 235 (87.8 bits), Expect = 5.3e-34, Sum P(3) = 5.3e-34
Identities = 48/109 (44%), Positives = 71/109 (65%)
Query: 396 VSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD 455
+SS+ A+ IHG + Q R + LR FR+G VLIA+ VA RGLD++ + +V+NYD PD
Sbjct: 837 LSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPD 896
Query: 456 NTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPD 504
N ++Y+HRIGRT R G + T F + N +L+ +L++A Q VP+
Sbjct: 897 NIDDYIHRIGRTGRVGNAGRA-TSFISEDCNLLSELVRVLSDADQLVPE 944
Score = 176 (67.0 bits), Expect = 5.3e-34, Sum P(3) = 5.3e-34
Identities = 46/126 (36%), Positives = 68/126 (53%)
Query: 112 YILPALYHILKMPKLEE-GDG---PIALVLAPTRELAQQI--QAVISIFSRTMRIRHACL 165
++LP + ++ L G+G P ++L PTREL QI + + M IR +
Sbjct: 606 FLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRP--V 663
Query: 166 YGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEP 224
YGG + Y + +GA I+V T GR+ F E GT +++ + VLDEADRM+D MGF
Sbjct: 664 YGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGT 723
Query: 225 QIRKII 230
I I+
Sbjct: 724 DIDTIV 729
Score = 119 (46.9 bits), Expect = 4.2e-28, Sum P(3) = 4.2e-28
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKII 290
+GA I+V T GR+ F E GT +++ + VLDEADRM+D MGF I I+
Sbjct: 678 KGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIV 729
Score = 95 (38.5 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKII 351
I HF E GT +++ + VLDEADRM+D MGF I I+
Sbjct: 690 IKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIV 729
Score = 87 (35.7 bits), Expect = 5.3e-34, Sum P(3) = 5.3e-34
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
++GY K T IQ + P+ G D++ AQTGSGKT + +
Sbjct: 569 HAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLL 608
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 235 (87.8 bits), Expect = 5.3e-34, Sum P(3) = 5.3e-34
Identities = 48/109 (44%), Positives = 71/109 (65%)
Query: 396 VSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPD 455
+SS+ A+ IHG + Q R + LR FR+G VLIA+ VA RGLD++ + +V+NYD PD
Sbjct: 837 LSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPD 896
Query: 456 NTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPD 504
N ++Y+HRIGRT R G + T F + N +L+ +L++A Q VP+
Sbjct: 897 NIDDYIHRIGRTGRVGNAGRA-TSFISEDCNLLSELVRVLSDADQLVPE 944
Score = 176 (67.0 bits), Expect = 5.3e-34, Sum P(3) = 5.3e-34
Identities = 46/126 (36%), Positives = 68/126 (53%)
Query: 112 YILPALYHILKMPKLEE-GDG---PIALVLAPTRELAQQI--QAVISIFSRTMRIRHACL 165
++LP + ++ L G+G P ++L PTREL QI + + M IR +
Sbjct: 606 FLLPIMARLIDENDLNTAGEGGCYPRCIILTPTRELTDQIYNEGRKFAYQTMMEIRP--V 663
Query: 166 YGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEP 224
YGG + Y + +GA I+V T GR+ F E GT +++ + VLDEADRM+D MGF
Sbjct: 664 YGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGT 723
Query: 225 QIRKII 230
I I+
Sbjct: 724 DIDTIV 729
Score = 119 (46.9 bits), Expect = 4.2e-28, Sum P(3) = 4.2e-28
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 240 RGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKII 290
+GA I+V T GR+ F E GT +++ + VLDEADRM+D MGF I I+
Sbjct: 678 KGATIIVGTVGRIKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIV 729
Score = 95 (38.5 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKII 351
I HF E GT +++ + VLDEADRM+D MGF I I+
Sbjct: 690 IKHFCEEGTIKLDKCRFFVLDEADRMIDAMGFGTDIDTIV 729
Score = 87 (35.7 bits), Expect = 5.3e-34, Sum P(3) = 5.3e-34
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 40 NSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
++GY K T IQ + P+ G D++ AQTGSGKT + +
Sbjct: 569 HAGYTKTTPIQQYTLPLIHQGHDIMACAQTGSGKTAAFLL 608
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 316 (116.3 bits), Expect = 5.3e-34, Sum P(2) = 5.3e-34
Identities = 85/280 (30%), Positives = 142/280 (50%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT---RHAH 297
G ++VATPGRL+D +E ++++ LV+DEADRM+DMGFE + K++ +
Sbjct: 297 GVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLS 356
Query: 298 PVVPVSLFISERRDTILHFLESGTTNVNRIT--------YLVLDEADRMLD---MGFEPQ 346
+ +F E+R T++ F + + V ++T YL + A LD FE
Sbjct: 357 STIDGRIFHLEKRSTMM-FTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFL 415
Query: 347 IRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGI 406
+ T+FN + + + W + + +F H ++ +SS+ + I
Sbjct: 416 SSATTEATKFNKLIKI--IRSHWRVTENPLII-IFANFKHV-CDSLSQELSSNDINNVVI 471
Query: 407 HGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGR 466
HG KSQ R+Q + +FR+ VLIA+DVA+RG+D+ ++ V+NY + Y+HRIGR
Sbjct: 472 HGSKSQDMREQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGR 531
Query: 467 TARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
T R+ G S+T + + L L + + +PD L
Sbjct: 532 TGRAGNLGESFTFISDQDTEIFTPLKKFLKKGGKRLPDWL 571
Score = 196 (74.1 bits), Expect = 4.9e-20, Sum P(2) = 4.9e-20
Identities = 46/130 (35%), Positives = 74/130 (56%)
Query: 112 YILPALYHILKMP----KLEE-GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLY 166
+++P L +IL + K E+ + P+ L+LAPTRELA QI F + + + +
Sbjct: 222 FLIPVLNYILSIDENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPII 281
Query: 167 GGTSKMYQTRDLCR-GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQ 225
GG + + G ++VATPGRL+D +E ++++ LV+DEADRM+DMGFE
Sbjct: 282 GGHHYQDTINKIDQTGVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKD 341
Query: 226 IRKIIQMTRT 235
+ K++ T
Sbjct: 342 LNKVLDKLPT 351
Score = 120 (47.3 bits), Expect = 5.3e-34, Sum P(2) = 5.3e-34
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 16 LPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTL 75
L Y+ G IN + S ++ G Y +PTS+Q S P+ L RD++G+A+TGSGKTL
Sbjct: 167 LRYWNEGSINDKLVSIISQLG------YEEPTSVQRASIPLALKKRDVVGVAETGSGKTL 220
Query: 76 SLTI 79
+ I
Sbjct: 221 AFLI 224
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 316 (116.3 bits), Expect = 5.3e-34, Sum P(2) = 5.3e-34
Identities = 85/280 (30%), Positives = 142/280 (50%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT---RHAH 297
G ++VATPGRL+D +E ++++ LV+DEADRM+DMGFE + K++ +
Sbjct: 297 GVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQLS 356
Query: 298 PVVPVSLFISERRDTILHFLESGTTNVNRIT--------YLVLDEADRMLD---MGFEPQ 346
+ +F E+R T++ F + + V ++T YL + A LD FE
Sbjct: 357 STIDGRIFHLEKRSTMM-FTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFL 415
Query: 347 IRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGI 406
+ T+FN + + + W + + +F H ++ +SS+ + I
Sbjct: 416 SSATTEATKFNKLIKI--IRSHWRVTENPLII-IFANFKHV-CDSLSQELSSNDINNVVI 471
Query: 407 HGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGR 466
HG KSQ R+Q + +FR+ VLIA+DVA+RG+D+ ++ V+NY + Y+HRIGR
Sbjct: 472 HGSKSQDMREQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGR 531
Query: 467 TARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
T R+ G S+T + + L L + + +PD L
Sbjct: 532 TGRAGNLGESFTFISDQDTEIFTPLKKFLKKGGKRLPDWL 571
Score = 196 (74.1 bits), Expect = 4.9e-20, Sum P(2) = 4.9e-20
Identities = 46/130 (35%), Positives = 74/130 (56%)
Query: 112 YILPALYHILKMP----KLEE-GDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLY 166
+++P L +IL + K E+ + P+ L+LAPTRELA QI F + + + +
Sbjct: 222 FLIPVLNYILSIDENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPII 281
Query: 167 GGTSKMYQTRDLCR-GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQ 225
GG + + G ++VATPGRL+D +E ++++ LV+DEADRM+DMGFE
Sbjct: 282 GGHHYQDTINKIDQTGVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMIDMGFEKD 341
Query: 226 IRKIIQMTRT 235
+ K++ T
Sbjct: 342 LNKVLDKLPT 351
Score = 120 (47.3 bits), Expect = 5.3e-34, Sum P(2) = 5.3e-34
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 16 LPYFRSGYINVLIASDVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTL 75
L Y+ G IN + S ++ G Y +PTS+Q S P+ L RD++G+A+TGSGKTL
Sbjct: 167 LRYWNEGSINDKLVSIISQLG------YEEPTSVQRASIPLALKKRDVVGVAETGSGKTL 220
Query: 76 SLTI 79
+ I
Sbjct: 221 AFLI 224
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 204 (76.9 bits), Expect = 5.8e-34, Sum P(3) = 5.8e-34
Identities = 41/101 (40%), Positives = 60/101 (59%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q RD +++FRSG VLIA+D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 289 FTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLVINYDLPANRENY 348
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQF 501
+HRIGR R + G++ T A D + ++ E QF
Sbjct: 349 IHRIGRGGRFGRKGVAINFVT------ADD-VRMMREIEQF 382
Score = 201 (75.8 bits), Expect = 5.8e-34, Sum P(3) = 5.8e-34
Identities = 49/119 (41%), Positives = 67/119 (56%)
Query: 116 ALYHILKMPKLEEGDGPI-ALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMY 173
A + I + KL+ AL++APTRELAQQIQ V+ M I+ HAC+ GGT+
Sbjct: 77 ATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACI-GGTAVRD 135
Query: 174 QTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQM 232
L G +IVV TPGR+ D ++ +++ +LDEAD ML GF QI I Q+
Sbjct: 136 DMNALREGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQL 194
Score = 118 (46.6 bits), Expect = 2.3e-25, Sum P(3) = 2.3e-25
Identities = 31/83 (37%), Positives = 42/83 (50%)
Query: 225 QIRKIIQMTRTRD----LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDM 280
Q I T RD L G +IVV TPGR+ D ++ +++ +LDEAD ML
Sbjct: 123 QCHACIGGTAVRDDMNALREGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSR 182
Query: 281 GFEPQIRKIIQMTRHAHPVVPVS 303
GF QI I Q+ + VV +S
Sbjct: 183 GFTEQIYDIFQLLPQSTQVVLLS 205
Score = 74 (31.1 bits), Expect = 5.8e-34, Sum P(3) = 5.8e-34
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 42 GYGKPTSIQAQS-WPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ +P++IQ ++ PI + G D+I AQ+G+GKT + +I Q
Sbjct: 44 GFERPSAIQQRAILPI-VKGNDVIAQAQSGTGKTATFSISALQ 85
Score = 69 (29.3 bits), Expect = 2.5e-20, Sum P(3) = 2.5e-20
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 314 LH-FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFL 362
+H ++ +++ +LDEAD ML GF QI I Q+ +T V L
Sbjct: 154 IHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 203
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 193 (73.0 bits), Expect = 9.0e-34, Sum P(3) = 9.0e-34
Identities = 43/111 (38%), Positives = 66/111 (59%)
Query: 125 KLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMR--IRHACLYGGTSKMYQTRDLCRGA 182
K +G+ LVL PTRELA+Q+ I ++ I+ ++GG S Q L G
Sbjct: 79 KNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQMLALRGGV 138
Query: 183 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 233
+I+VATPGRL+D + S ++++ LVLDEADRML +GF ++ ++ +T
Sbjct: 139 DILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALT 189
Score = 189 (71.6 bits), Expect = 9.0e-34, Sum P(3) = 9.0e-34
Identities = 38/107 (35%), Positives = 64/107 (59%)
Query: 377 ERW----VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIA 432
E+W +F+ H+ + A+ HGDK Q R + L F++G I VLIA
Sbjct: 253 EQWRQALIFVNAKHHCEHLAEKLAKRGITAAV-FHGDKGQSERSRVLDGFKAGDIEVLIA 311
Query: 433 SDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTL 479
+D+A+RGLD+E + V+N++ P + +Y+HRIGR+ R+ + G++ +L
Sbjct: 312 TDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISL 358
Score = 138 (53.6 bits), Expect = 5.2e-28, Sum P(3) = 5.2e-28
Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 230 IQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 289
IQM R G +I+VATPGRL+D + S ++++ LVLDEADRML +GF ++ +
Sbjct: 129 IQMLALRG---GVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTAL 185
Query: 290 IQMT 293
+ +T
Sbjct: 186 LALT 189
Score = 100 (40.3 bits), Expect = 9.0e-34, Sum P(3) = 9.0e-34
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 43 YGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSK 97
Y +PT IQA++ P +GRDLI A TGSGKT + + Q R S SK
Sbjct: 28 YHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQKLREDISSGSKNSK 82
Score = 85 (35.0 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 354
+L + S ++++ LVLDEADRML +GF ++ ++ +T
Sbjct: 148 LLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALT 189
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 205 (77.2 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 46/137 (33%), Positives = 74/137 (54%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y +HGD Q R++ ++ FR I LIA+DVA+RGLDV+ + +V NYD P++ E+Y
Sbjct: 269 YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESY 328
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQ---FVPDRLLLLAAKNKPIT 517
+HRIGRT R+ +G++ T + +++ L Q ++ + KP+
Sbjct: 329 IHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGAPIQREIIEQPKIKRVDENGKPLP 388
Query: 518 TRQWKR--EYWRRKSSE 532
K+ EY +R S E
Sbjct: 389 KPAPKKSGEYRQRDSRE 405
Score = 177 (67.4 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 50/123 (40%), Positives = 67/123 (54%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS-IFSRTMRIRHACLYGGTS 170
++LP L I P E D AL++APTRELA QI I + + I +YGG
Sbjct: 59 FVLPILEKI--DP--ESSDVQ-ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQD 113
Query: 171 KMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
Q R L IVVATPGRL+D + T +++ ++ +VLDEAD+ML GF I I+
Sbjct: 114 VAQQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDIL 173
Query: 231 QMT 233
T
Sbjct: 174 DET 176
Score = 116 (45.9 bits), Expect = 3.4e-27, Sum P(3) = 3.4e-27
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
R L IVVATPGRL+D + T +++ ++ +VLDEAD+ML GF I I+ T
Sbjct: 119 RKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET 176
Score = 97 (39.2 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+ +G + T IQ ++ P+ LSG+D+IG A+TG+GKTL+ +
Sbjct: 21 RENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVL 61
Score = 67 (28.6 bits), Expect = 3.8e-22, Sum P(3) = 3.8e-22
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 354
+L + T +++ ++ +VLDEAD+ML GF I I+ T
Sbjct: 135 LLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET 176
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 205 (77.2 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 46/137 (33%), Positives = 74/137 (54%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
Y +HGD Q R++ ++ FR I LIA+DVA+RGLDV+ + +V NYD P++ E+Y
Sbjct: 269 YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESY 328
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQ---FVPDRLLLLAAKNKPIT 517
+HRIGRT R+ +G++ T + +++ L Q ++ + KP+
Sbjct: 329 IHRIGRTGRAGGSGLAITFVAAKDEKHLEEIEKTLGAPIQREIIEQPKIKRVDENGKPLP 388
Query: 518 TRQWKR--EYWRRKSSE 532
K+ EY +R S E
Sbjct: 389 KPAPKKSGEYRQRDSRE 405
Score = 177 (67.4 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 50/123 (40%), Positives = 67/123 (54%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS-IFSRTMRIRHACLYGGTS 170
++LP L I P E D AL++APTRELA QI I + + I +YGG
Sbjct: 59 FVLPILEKI--DP--ESSDVQ-ALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQD 113
Query: 171 KMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
Q R L IVVATPGRL+D + T +++ ++ +VLDEAD+ML GF I I+
Sbjct: 114 VAQQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDIL 173
Query: 231 QMT 233
T
Sbjct: 174 DET 176
Score = 116 (45.9 bits), Expect = 3.4e-27, Sum P(3) = 3.4e-27
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 236 RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 293
R L IVVATPGRL+D + T +++ ++ +VLDEAD+ML GF I I+ T
Sbjct: 119 RKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET 176
Score = 97 (39.2 bits), Expect = 1.6e-33, Sum P(3) = 1.6e-33
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
+ +G + T IQ ++ P+ LSG+D+IG A+TG+GKTL+ +
Sbjct: 21 RENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVL 61
Score = 67 (28.6 bits), Expect = 3.8e-22, Sum P(3) = 3.8e-22
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 354
+L + T +++ ++ +VLDEAD+ML GF I I+ T
Sbjct: 135 LLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDET 176
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 196 (74.1 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
Identities = 48/118 (40%), Positives = 66/118 (55%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTMRIR-HACLYGGTSKMYQTRDLCRGAEIVVATPG 190
P L+L+PTRELAQQIQ V S M I+ HAC+ GG + + L G IV TPG
Sbjct: 101 PQVLILSPTRELAQQIQKVALALSEFMNIQVHACV-GGKNLSDDVKKLETGVHIVSGTPG 159
Query: 191 RLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT 248
R++D + + I ++LDEAD ML +GF+ QI + R L G +IV+ +
Sbjct: 160 RVLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVY-----RYLPNGTQIVLVS 212
Score = 195 (73.7 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
Identities = 40/101 (39%), Positives = 61/101 (60%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ +HGD Q R++ ++ FRSG VLI +D+ +RG+DV+ + V+NYD P + ENY
Sbjct: 296 FTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENY 355
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQF 501
+HRIGR+ R + G++ +N K D I IL + QF
Sbjct: 356 IHRIGRSGRFGRKGVA------INFVKNSD-IRILRDIEQF 389
Score = 115 (45.5 bits), Expect = 6.4e-25, Sum P(3) = 6.4e-25
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVV 300
G IV TPGR++D + + I ++LDEAD ML +GF+ QI + + + +V
Sbjct: 150 GVHIVSGTPGRVLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYLPNGTQIV 209
Query: 301 PVSLFISE 308
VS +++
Sbjct: 210 LVSATLTQ 217
Score = 84 (34.6 bits), Expect = 2.6e-33, Sum P(3) = 2.6e-33
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 35 RGLGKNSGYGKPTSIQAQS-WPICLSGRDLIGIAQTGSGKTLSLTI 79
RG+ N G+ KP++IQ ++ PI + GRD I AQ+G+GKT + +I
Sbjct: 45 RGIF-NYGFEKPSAIQQRAILPI-IKGRDTIAQAQSGTGKTATFSI 88
Score = 70 (29.7 bits), Expect = 2.8e-20, Sum P(3) = 2.8e-20
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFL 362
+L + + I ++LDEAD ML +GF+ QI + + T + L
Sbjct: 161 VLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYLPNGTQIVL 210
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 220 (82.5 bits), Expect = 3.6e-33, Sum P(3) = 3.6e-33
Identities = 39/78 (50%), Positives = 62/78 (79%)
Query: 403 AMG-IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYV 461
A+G +HGD Q R++ L+ FR+G I+VL+A+DVA+RG+D++D+ +V+NY P++ + YV
Sbjct: 296 AVGAVHGDLGQLAREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYV 355
Query: 462 HRIGRTARSTKTGISYTL 479
HRIGRT R+ +TG++ TL
Sbjct: 356 HRIGRTGRAGRTGVAVTL 373
Score = 168 (64.2 bits), Expect = 3.6e-33, Sum P(3) = 3.6e-33
Identities = 42/114 (36%), Positives = 61/114 (53%)
Query: 132 PIALVLAPTRELAQQIQAVISIFSRTM--------------RIRHACLYGGTSKMYQTRD 177
P ALV+ PTREL Q+ ++ + + R+ +YGG Q
Sbjct: 85 PRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIEA 144
Query: 178 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
L GA++VV TPGRL+D + G + ++ LVLDEAD MLD+GF P I +I++
Sbjct: 145 LRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILR 198
Score = 143 (55.4 bits), Expect = 1.4e-30, Sum P(3) = 1.4e-30
Identities = 42/118 (35%), Positives = 61/118 (51%)
Query: 175 TRDLCRGAEIVVATPGRLIDFLESGT-TNVNRITYLVLDEADRMLDMGFEPQIRKIIQMT 233
TR+LC +AT G+ +L +G T+ L +EPQI +
Sbjct: 93 TRELCLQVTDDLATAGK---YLTAGPDTDDAAAVRRRLSVVSIYGGRPYEPQIEAL---- 145
Query: 234 RTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
R GA++VV TPGRL+D + G + ++ LVLDEAD MLD+GF P I +I++
Sbjct: 146 RA-----GADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILR 198
Score = 90 (36.7 bits), Expect = 3.6e-33, Sum P(3) = 3.6e-33
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 31 DVASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTI 79
D R LG+ G +P +IQ + P+ L G D+IG A+TG GKT + +
Sbjct: 19 DEIVRALGEE-GIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGV 66
Score = 89 (36.4 bits), Expect = 5.5e-25, Sum P(3) = 5.5e-25
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 352
+L + G + ++ LVLDEAD MLD+GF P I +I++
Sbjct: 159 LLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERILR 198
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 323 (118.8 bits), Expect = 4.3e-33, Sum P(2) = 4.3e-33
Identities = 88/273 (32%), Positives = 139/273 (50%)
Query: 241 GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVV 300
GAE+VV TPGR+ID ++ G TN R T+LV DEADRM DMGFE Q++ I + H P
Sbjct: 389 GAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSI---SDHVRPDR 445
Query: 301 PVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCV 360
+F + + + + RI + EA+ ++ +K+ M N V
Sbjct: 446 QCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIE-------QKVFVMQ--NQDV 496
Query: 361 FLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLR 420
L +++ + A + + + +E + + + +HGD Q R++ L
Sbjct: 497 KLHWLIRN-LVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLL 555
Query: 421 DFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLF 480
FR +L+A+DVA+RGLD+ +I+ V+N+D + + +VHRIGRT R+ G +YTL
Sbjct: 556 KFRKKS-QILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLV 614
Query: 481 TPLNGNKAQDLIDILNEAHQFVPDRLLLLAAKN 513
T + L+ L Q VP L+ LA K+
Sbjct: 615 TEKDIEMVGHLVKNLESVSQEVPKPLMDLAMKS 647
Score = 306 (112.8 bits), Expect = 4.4e-31, Sum P(2) = 4.4e-31
Identities = 61/129 (47%), Positives = 81/129 (62%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
Y+ PA+ HI+ P L+ G+GP+A+++ PTRELA Q+ F + I C YGG SK
Sbjct: 319 YLWPAIVHIMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSK 378
Query: 172 MYQTRDLCR-GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 230
Q+ +L GAE+VV TPGR+ID ++ G TN R T+LV DEADRM DMGFE Q++ I
Sbjct: 379 WEQSNELQNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSIS 438
Query: 231 QMTRTRDLC 239
R C
Sbjct: 439 DHVRPDRQC 447
Score = 111 (44.1 bits), Expect = 4.3e-33, Sum P(2) = 4.3e-33
Identities = 22/36 (61%), Positives = 28/36 (77%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
+ S Y +PT IQA + P LSGRD++GIA+TGSGKT
Sbjct: 281 RKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKT 316
Score = 37 (18.1 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 32 VASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGI 66
+A G GK + Y P + P +G + +
Sbjct: 308 IAKTGSGKTAAYLWPAIVHIMDQPDLKAGEGPVAV 342
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 221 (82.9 bits), Expect = 7.9e-33, Sum P(3) = 7.9e-33
Identities = 52/134 (38%), Positives = 80/134 (59%)
Query: 131 GPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPG 190
G A++L+PTRELA Q V+ FS+ ++R + GG S Q DL R +I++ATPG
Sbjct: 300 GVRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLARNPDIIIATPG 359
Query: 191 RLID-FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVAT- 248
RL+ LE+G + ++++ Y+V DEADR+ +MGF Q+ +I+ R + AT
Sbjct: 360 RLMHHLLETGMS-LSKVQYIVFDEADRLFEMGFNEQLTEILSKLSEN---RQTLLFSATL 415
Query: 249 PGRLIDFLESGTTN 262
P L+DF+ +G N
Sbjct: 416 PSLLVDFVRAGLNN 429
Score = 168 (64.2 bits), Expect = 7.9e-33, Sum P(3) = 7.9e-33
Identities = 30/77 (38%), Positives = 51/77 (66%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIG 465
IHG R L FRS + V++ +D+A+RG+D+ + V+N+DFP + ++HR+G
Sbjct: 527 IHGYLDPVARKINLAKFRSHQVGVMVVTDLAARGIDIPLLDNVINFDFPPKEKIFIHRVG 586
Query: 466 RTARSTKTGISYTLFTP 482
R AR+ ++GI+Y+L +P
Sbjct: 587 RVARAGRSGIAYSLVSP 603
Score = 139 (54.0 bits), Expect = 6.8e-24, Sum P(3) = 6.8e-24
Identities = 30/88 (34%), Positives = 52/88 (59%)
Query: 237 DLCRGAEIVVATPGRLID-FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
DL R +I++ATPGRL+ LE+G + ++++ Y+V DEADR+ +MGF Q+ +I+
Sbjct: 346 DLARNPDIIIATPGRLMHHLLETGMS-LSKVQYIVFDEADRLFEMGFNEQLTEILSKLSE 404
Query: 296 AHPVVPVSLFISERRDTILHFLESGTTN 323
+ LF + ++ F+ +G N
Sbjct: 405 NRQTL---LFSATLPSLLVDFVRAGLNN 429
Score = 101 (40.6 bits), Expect = 7.9e-33, Sum P(3) = 7.9e-33
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQ 83
G+ PT IQ +S P+ L G D++G+A+TGSGKT + I Q
Sbjct: 249 GFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQ 290
Score = 93 (37.8 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
Identities = 16/37 (43%), Positives = 28/37 (75%)
Query: 315 HFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
H LE+G + ++++ Y+V DEADR+ +MGF Q+ +I+
Sbjct: 364 HLLETGMS-LSKVQYIVFDEADRLFEMGFNEQLTEIL 399
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 190 (71.9 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 52/149 (34%), Positives = 76/149 (51%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+++P + H LK AL+L+P RELA Q V+ FS+ +R + GG S
Sbjct: 123 FVIPMIEH-LKSTLANSNTR--ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSL 179
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 231
Q L +IVVATPGR + ++ I Y+V DEADR+ +MGF Q+ +I+
Sbjct: 180 EEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILH 239
Query: 232 MTRTRDLCRGAEIVVAT-PGRLIDFLESG 259
T R + AT P L+DF ++G
Sbjct: 240 ALPTS---RQTLLFSATLPRTLVDFAKAG 265
Score = 188 (71.2 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 43/117 (36%), Positives = 64/117 (54%)
Query: 380 VFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRG 439
VF+ H+ V + Y I+G Q R + +FR G N+L+ +DVASRG
Sbjct: 351 VFVPTKHHVEYVSELLVQAG-YSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRG 409
Query: 440 LDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILN 496
+D+ + V+NYDFP + +VHR+GRTAR+ +TG +Y+L + DL LN
Sbjct: 410 IDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLN 466
Score = 117 (46.2 bits), Expect = 5.3e-25, Sum P(3) = 5.3e-25
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 243 EIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPV 302
+IVVATPGR + ++ I Y+V DEADR+ +MGF Q+ +I+ HA P
Sbjct: 191 DIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEIL----HALPTSRQ 246
Query: 303 SLFISERRD-TILHFLESG 320
+L S T++ F ++G
Sbjct: 247 TLLFSATLPRTLVDFAKAG 265
Score = 108 (43.1 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNT 95
G+ PT IQ ++ P+ L GRD++G+A+TGSGKT + I + + S SNT
Sbjct: 88 GFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLK-STLANSNT 140
Score = 77 (32.2 bits), Expect = 7.0e-21, Sum P(3) = 7.0e-21
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 314 LHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
LH ++ I Y+V DEADR+ +MGF Q+ +I+
Sbjct: 201 LHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEIL 238
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 300 (110.7 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 83/254 (32%), Positives = 135/254 (53%)
Query: 229 IIQMTRTRDLCRGAEIVVATPGRLIDFLESGTT-NVNRITYLVLDEADRMLDMGFEPQIR 287
I M+++ L + IV+ATPGRLID LE+ N+ + YLV+DEADR+L+M FE ++
Sbjct: 130 IDSMSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVD 189
Query: 288 KIIQMTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQI 347
KI++ V+P R T L F + T V ++ L + +
Sbjct: 190 KILK-------VIP------RDRKTFL-FSATMTKKVQKLQRAALKNPVKCAVSSKYQTV 235
Query: 348 RKIIQMTRFNTCVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIH 407
K+ Q F F L + +AG +F +N T+ + + + A+ +H
Sbjct: 236 EKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNN-TQRTALLLRNLGFTAIPLH 294
Query: 408 GDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRT 467
G SQ R +L F++ ++L+A+DVASRGLD+ + VVN+D P ++++Y+HR+GRT
Sbjct: 295 GQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRT 354
Query: 468 ARSTKTGISYTLFT 481
AR+ ++G + T T
Sbjct: 355 ARAGRSGKAITFVT 368
Score = 208 (78.3 bits), Expect = 3.2e-21, Sum P(2) = 3.2e-21
Identities = 50/122 (40%), Positives = 73/122 (59%)
Query: 112 YILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSK 171
+ LP L +L+ P+ ALVL PTRELA QI ++ ++ A + GG
Sbjct: 78 FALPILNALLETPQRL-----FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDS 132
Query: 172 MYQTRDLCRGAEIVVATPGRLIDFLESGTT-NVNRITYLVLDEADRMLDMGFEPQIRKII 230
M Q+ L + IV+ATPGRLID LE+ N+ + YLV+DEADR+L+M FE ++ KI+
Sbjct: 133 MSQSLALAKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKIL 192
Query: 231 QM 232
++
Sbjct: 193 KV 194
Score = 114 (45.2 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 42 GYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKT 74
G+ KPT IQ ++ P+ L GRD+IG+A+TGSGKT
Sbjct: 43 GWAKPTKIQIEAIPLALQGRDIIGLAETGSGKT 75
WARNING: HSPs involving 634 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.137 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 537 537 0.00093 119 3 11 22 0.36 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 884
No. of states in DFA: 623 (66 KB)
Total size of DFA: 296 KB (2151 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.71u 0.12s 41.83t Elapsed: 00:00:03
Total cpu time: 41.78u 0.12s 41.90t Elapsed: 00:00:03
Start: Thu Aug 15 11:48:19 2013 End: Thu Aug 15 11:48:22 2013
WARNINGS ISSUED: 2