RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10680
(537 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 105 bits (263), Expect = 9e-27
Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 43/199 (21%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGR-DLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSK 97
+N G+ KPT IQ + P+ L+ +++ A+TGSGK
Sbjct: 20 RNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGK------------------------ 55
Query: 98 EESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRT 157
A + I + + E +G A++L PTRELA Q+ I
Sbjct: 56 -----------------TASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN 98
Query: 158 MRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRM 217
++ A +YGG + Q + L + A IVV TPGR++D + GT N+ + Y +LDEAD M
Sbjct: 99 KNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM 157
Query: 218 LDMGFEPQIRKIIQMTRTR 236
L+MGF + KI+
Sbjct: 158 LNMGFIKDVEKILNACNKD 176
Score = 80.9 bits (199), Expect = 3e-18
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 219 DMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRML 278
PQI+ + + A IVV TPGR++D + GT N+ + Y +LDEAD ML
Sbjct: 109 GKAIYPQIKAL----------KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEML 158
Query: 279 DMGFEPQIRKIIQMTR 294
+MGF + KI+
Sbjct: 159 NMGFIKDVEKILNACN 174
Score = 55.1 bits (132), Expect = 3e-09
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFL 362
IL + GT N+ + Y +LDEAD ML+MGF + KI+ + + L
Sbjct: 132 ILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILL 181
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 96.1 bits (238), Expect = 4e-23
Identities = 71/196 (36%), Positives = 95/196 (48%), Gaps = 31/196 (15%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98
+ Y +PT IQ + P L RD++ AQTGSGK
Sbjct: 37 LLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGK------------------------- 71
Query: 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM 158
+ I + L + + P L+LAPTRELA QI + FS
Sbjct: 72 ------TAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT 125
Query: 159 RIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRML 218
+R +YGG Q R++ G ++VATPGRL+DF+E ++ Y+VLDEADRML
Sbjct: 126 PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRML 185
Query: 219 DMGFEPQIRKIIQMTR 234
DMGFEPQIRKII+ +
Sbjct: 186 DMGFEPQIRKIIEESN 201
Score = 41.4 bits (96), Expect = 1e-04
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 231 QMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
++ R++ G ++VATPGRL+DF+E ++ Y+VLDEADRMLDMGFEPQIRKII
Sbjct: 138 THSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKII 197
Query: 291 QMTRHAHPVVPVSLFIS 307
+ + + +L S
Sbjct: 198 EESNMPSGINRQTLMFS 214
Score = 29.1 bits (64), Expect = 1.1
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 313 ILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTR 355
++ F+E ++ Y+VLDEADRMLDMGFEPQIRKII+ +
Sbjct: 159 LVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESN 201
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 87.6 bits (216), Expect = 2e-20
Identities = 56/199 (28%), Positives = 76/199 (38%), Gaps = 41/199 (20%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98
G+ KP++IQ ++ C+ G D+I AQ+G+GKT +
Sbjct: 28 YAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF--------------------- 66
Query: 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM 158
+ + ALVLAPTRELAQQIQ V+ M
Sbjct: 67 -------------------AISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM 107
Query: 159 RIRHACLYG-GTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRM 217
G + + I+V TPGR+ D L + I VLDEAD M
Sbjct: 108 GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM 167
Query: 218 LDMGFEPQIRKIIQMTRTR 236
L GF+ QI I Q +
Sbjct: 168 LSRGFKDQIYDIFQKLNSN 186
Score = 49.5 bits (117), Expect = 2e-07
Identities = 23/66 (34%), Positives = 30/66 (45%)
Query: 230 IQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 289
++ + I+V TPGR+ D L + I VLDEAD ML GF+ QI I
Sbjct: 120 VRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDI 179
Query: 290 IQMTRH 295
Q
Sbjct: 180 FQKLNS 185
Score = 33.3 bits (75), Expect = 0.054
Identities = 20/52 (38%), Positives = 23/52 (44%)
Query: 311 DTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFL 362
+ L + I VLDEAD ML GF+ QI I Q NT V L
Sbjct: 140 GRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL 191
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 88.8 bits (220), Expect = 3e-20
Identities = 13/95 (13%), Positives = 24/95 (25%), Gaps = 14/95 (14%)
Query: 401 YRAMGIHGDKSQ----------WNRDQTLRDFRSGYINVLIASDVASRGLDVEDIK---Y 447
A+ + L +G + +I + +
Sbjct: 61 INAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFT 120
Query: 448 VVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTP 482
+ P + + R GRT R K GI +
Sbjct: 121 IETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPG 154
Score = 29.9 bits (67), Expect = 0.77
Identities = 2/20 (10%), Positives = 6/20 (30%)
Query: 19 FRSGYINVLIASDVASRGLG 38
+G + +I +
Sbjct: 92 GFTGDFDSVIDCNTCVTQTV 111
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 86.8 bits (214), Expect = 4e-20
Identities = 61/198 (30%), Positives = 89/198 (44%), Gaps = 41/198 (20%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98
G+ +P++IQ ++ + G D++ AQ+G+GKT + +I Q
Sbjct: 26 FGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ--------------- 70
Query: 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM 158
I K P AL+LAPTRELA QIQ V+ + M
Sbjct: 71 --------------------RIDTSVK-----APQALMLAPTRELALQIQKVVMALAFHM 105
Query: 159 RIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRML 218
I+ GGTS + L R A+IVV TPGR+ D ++ ++I +LDEAD ML
Sbjct: 106 DIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 164
Query: 219 DMGFEPQIRKIIQMTRTR 236
GF+ QI +I +
Sbjct: 165 SSGFKEQIYQIFTLLPPT 182
Score = 53.3 bits (127), Expect = 1e-08
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 232 MTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
+ R A+IVV TPGR+ D ++ ++I +LDEAD ML GF+ QI +I
Sbjct: 118 FVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFT 177
Query: 292 MTRH 295
+
Sbjct: 178 LLPP 181
Score = 37.5 bits (86), Expect = 0.002
Identities = 41/185 (22%), Positives = 69/185 (37%), Gaps = 23/185 (12%)
Query: 201 TNVNRITY----LVLDEA--DRMLDMGFE----PQIRKIIQMTRTRDL-CRGAEIVVATP 249
TN +++ Y + LDE + GFE Q R I+ + D+ + T
Sbjct: 3 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTG 62
Query: 250 GRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISE- 308
I L+ T+V L+L + + + M H + + F+ +
Sbjct: 63 TFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDA 122
Query: 309 ---RRDTIL--------HFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFN 357
R I+ ++ ++I +LDEAD ML GF+ QI +I +
Sbjct: 123 EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 182
Query: 358 TCVFL 362
T V L
Sbjct: 183 TQVVL 187
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 87.3 bits (215), Expect = 4e-20
Identities = 33/213 (15%), Positives = 56/213 (26%), Gaps = 64/213 (30%)
Query: 41 SGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEES 100
G+P +IQ L A TG GKT
Sbjct: 39 KCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSF------------------------ 74
Query: 101 SWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRI 160
+ +L+ LK + V+ PT L Q I ++ +
Sbjct: 75 -----------GLAMSLFLALKGKR--------CYVIFPTSLLVIQAAETIRKYAEKAGV 115
Query: 161 RHACLYGG------TSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEA 214
L G + R +IV+ T L + ++ +D+
Sbjct: 116 GTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY----RELGHFDFIFVDDV 171
Query: 215 DRMLD-----------MGFEPQIRKIIQMTRTR 236
D +L +GF ++ + R
Sbjct: 172 DAILKASKNVDKLLHLLGFHYDLKTKSWVGEAR 204
Score = 42.2 bits (98), Expect = 7e-05
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 15/76 (19%)
Query: 239 CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-----------MGFEPQIR 287
R +IV+ T L + ++ +D+ D +L +GF ++
Sbjct: 140 LRNFKIVITTTQFLSKHY----RELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLK 195
Query: 288 KIIQMTRHAHPVVPVS 303
+ ++ +
Sbjct: 196 TKSWVGEARGCLMVST 211
Score = 39.5 bits (91), Expect = 5e-04
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 11/59 (18%)
Query: 315 HFLESGTTNVNRITYLVLDEADRMLD-----------MGFEPQIRKIIQMTRFNTCVFL 362
FL + ++ +D+ D +L +GF ++ + C+ +
Sbjct: 151 QFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMV 209
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 83.0 bits (204), Expect = 1e-18
Identities = 54/198 (27%), Positives = 79/198 (39%), Gaps = 40/198 (20%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98
G+ KP++IQ ++ + GRD+I +Q+G+GKT
Sbjct: 33 YAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA----------------------- 69
Query: 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM 158
+ + AL+LAPTRELA QIQ + M
Sbjct: 70 -----------------TFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM 112
Query: 159 RIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRML 218
++ GGT+ R L G +V TPGR+ D + + I LVLDEAD ML
Sbjct: 113 NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEML 172
Query: 219 DMGFEPQIRKIIQMTRTR 236
+ GF+ QI + +
Sbjct: 173 NKGFKEQIYDVYRYLPPA 190
Score = 44.4 bits (104), Expect = 1e-05
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 238 LCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRH 295
L G +V TPGR+ D + + I LVLDEAD ML+ GF+ QI + +
Sbjct: 132 LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 189
Score = 32.1 bits (72), Expect = 0.11
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 323 NVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFL 362
I LVLDEAD ML+ GF+ QI + + T V L
Sbjct: 156 RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 195
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 83.8 bits (206), Expect = 1e-18
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
Query: 366 LYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNR--------DQ 417
+ + + + + + +A G S+ N
Sbjct: 151 IIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKL 210
Query: 418 TLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISY 477
L +F G NVL+A+ V GLDV ++ VV Y+ + + R GRT R G
Sbjct: 211 ILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR-HMPGRVI 269
Query: 478 TLFTP 482
L
Sbjct: 270 ILMAK 274
Score = 26.4 bits (57), Expect = 8.6
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 19 FRSGYINVLIASDVASRGLGKNSG-----YGKPTSIQAQSWPICLSGRDLIGIAQTGSGK 73
F G NVL+A+ V GL Y S I GR + G+
Sbjct: 215 FARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRS---IQRRGR----TGRHMPGR 267
Query: 74 TLSLTIENT 82
+ L + T
Sbjct: 268 VIILMAKGT 276
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 75.6 bits (185), Expect = 6e-16
Identities = 21/132 (15%), Positives = 39/132 (29%), Gaps = 9/132 (6%)
Query: 389 TETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIA----SDVASRGLDV-E 443
T + F G I+ LI RGLD+ E
Sbjct: 32 ARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPE 91
Query: 444 DIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVP 503
I++ V P ++ I + + + N ++ + L+ + V
Sbjct: 92 RIRFAVFVGCP----SFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVR 147
Query: 504 DRLLLLAAKNKP 515
+ L + K +P
Sbjct: 148 EILKKVMGKERP 159
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 74.2 bits (181), Expect = 7e-16
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 43/201 (21%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98
+ G+ P+ +Q + P + G D++ A++G GKT
Sbjct: 17 VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKT------------------------ 52
Query: 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM 158
++L L + + LV+ TRELA QI FS+ M
Sbjct: 53 -----------AVFVLATLQQLEPVT-----GQVSVLVMCHTRELAFQISKEYERFSKYM 96
Query: 159 RI-RHACLYGGTSKMYQTRDLCR-GAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADR 216
+ A +GG S L + IVV TPGR++ + + N+ I + +LDE D+
Sbjct: 97 PNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 156
Query: 217 MLD-MGFEPQIRKIIQMTRTR 236
ML+ + +++I +MT
Sbjct: 157 MLEQLDMRRDVQEIFRMTPHE 177
Score = 41.8 bits (97), Expect = 7e-05
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 239 CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLD-MGFEPQIRKIIQMTRH 295
IVV TPGR++ + + N+ I + +LDE D+ML+ + +++I +MT H
Sbjct: 119 KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 176
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 66.5 bits (161), Expect = 3e-13
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 41/199 (20%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98
G+ KP+ IQ +S PI LSGRD++ A+ G+GK
Sbjct: 19 FEMGWEKPSPIQEESIPIALSGRDILARAKNGTGK------------------------- 53
Query: 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM 158
Y++P L + D A+V+ PTRELA Q+ + S+ M
Sbjct: 54 ----------SGAYLIPLLERLDLKK-----DNIQAMVIVPTRELALQVSQICIQVSKHM 98
Query: 159 RIRHACLYGGTSKMYQT-RDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRM 217
G + + L +V+ATPGR++D ++ G V+ + +VLDEAD++
Sbjct: 99 GGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKL 158
Query: 218 LDMGFEPQIRKIIQMTRTR 236
L F + II
Sbjct: 159 LSQDFVQIMEDIILTLPKN 177
Score = 35.7 bits (81), Expect = 0.008
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 231 QMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
L +V+ATPGR++D ++ G V+ + +VLDEAD++L F + II
Sbjct: 112 LRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDII 171
Query: 291 QMTR 294
Sbjct: 172 LTLP 175
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 64.6 bits (156), Expect = 2e-12
Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 40/198 (20%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98
+G+ KP+ IQ ++ P+ ++GRD++ A+ G+GKT
Sbjct: 17 FEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTA----------------------- 53
Query: 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM 158
A + + AL++ PTRELA Q V+ +
Sbjct: 54 -----------------AFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC 96
Query: 159 RIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRML 218
I GGT+ L I+V TPGR++D +++ + ++DEAD+ML
Sbjct: 97 GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKML 156
Query: 219 DMGFEPQIRKIIQMTRTR 236
F+ I +I+
Sbjct: 157 SRDFKTIIEQILSFLPPT 174
Score = 31.5 bits (70), Expect = 0.16
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 231 QMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 290
L I+V TPGR++D +++ + ++DEAD+ML F+ I +I+
Sbjct: 109 LRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQIL 168
Query: 291 QMTRHAH 297
H
Sbjct: 169 SFLPPTH 175
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 64.2 bits (155), Expect = 2e-12
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ I S+ R++ L FR+G +++S V G+DV D V + Y
Sbjct: 113 FLIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREY 172
Query: 461 VHRIGRTARSTKTGISYTLFT 481
+ R+GR R +K L+
Sbjct: 173 IQRLGRILRPSKGKKEAVLYE 193
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 62.3 bits (150), Expect = 5e-12
Identities = 37/134 (27%), Positives = 64/134 (47%)
Query: 370 FILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINV 429
I + V + + + + +HGD Q R+ +++FRSG V
Sbjct: 28 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 87
Query: 430 LIASDVASRGLDVEDIKYVVNYDFPDNTENYVHRIGRTARSTKTGISYTLFTPLNGNKAQ 489
LI++DV +RGLDV + ++NYD P+N E Y+HRIGR+ R + G++ + +
Sbjct: 88 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILR 147
Query: 490 DLIDILNEAHQFVP 503
D+ + +P
Sbjct: 148 DIEQYYSTQIDEMP 161
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 63.1 bits (152), Expect = 5e-12
Identities = 33/209 (15%), Positives = 58/209 (27%), Gaps = 51/209 (24%)
Query: 33 ASRGLGKNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGR 92
A + L + GY + Q + LSGRD + + TG GK+L
Sbjct: 13 AKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLC---------------- 56
Query: 93 SNTSKEESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVIS 152
Y +PAL + +V++P L + +
Sbjct: 57 -------------------YQIPALLLN-----------GLTVVVSPLISLMKDQVDQLQ 86
Query: 153 IFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLD 212
++ T ++ P RL+ L +D
Sbjct: 87 ANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146
Query: 213 EADRMLDMGFEP-----QIRKIIQMTRTR 236
EA + G + + ++ Q T
Sbjct: 147 EAHCISQWGHDFRPEYAALGQLRQRFPTL 175
Score = 37.3 bits (85), Expect = 0.002
Identities = 26/161 (16%), Positives = 45/161 (27%), Gaps = 11/161 (6%)
Query: 146 QIQAVISIFSRTMRIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNR 205
Q + + ++ S + GG S YQ L VV +P ++ +
Sbjct: 30 QEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSP----------LISLMK 79
Query: 206 ITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNR 265
L Q R+ T ++ P RL+
Sbjct: 80 DQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWN 139
Query: 266 ITYLVLDEADRMLDMGFEPQIR-KIIQMTRHAHPVVPVSLF 305
L +DEA + G + + + R P +P
Sbjct: 140 PVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMAL 180
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 62.7 bits (151), Expect = 6e-12
Identities = 31/225 (13%), Positives = 69/225 (30%), Gaps = 54/225 (24%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98
K G + QA++ SG++L+ T +GKTL
Sbjct: 19 KEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTL----------------------- 55
Query: 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM 158
+ + +K K + P R LA + + +
Sbjct: 56 ------------LAEMAMVREAIKGGKSL--------YVVPLRALAGEKYESFKKWEKIG 95
Query: 159 RIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRML 218
S+ D +V T + + + + + ++ LV+DE +
Sbjct: 96 LRIGISTGDYESRDEHLGDCDI----IVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLD 151
Query: 219 DMGFEPQIRKIIQMTRTRDLCRGAEIVV--AT---PGRLIDFLES 258
+ ++ T+ R + + ++ AT + ++L++
Sbjct: 152 SEKRGATLEILV--TKMRRMNKALRVIGLSATAPNVTEIAEWLDA 194
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 64.2 bits (155), Expect = 7e-12
Identities = 46/425 (10%), Positives = 89/425 (20%), Gaps = 136/425 (32%)
Query: 59 SGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWNNNVVDVKYILPALY 118
R I G+GKT Y+ +
Sbjct: 8 KKRLTIMDLHPGAGKTKR-----------------------------------YLPAIVR 32
Query: 119 HILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHACLYGGTSKMYQTRDL 178
+K G L+LAPTR +A +++ + + +
Sbjct: 33 EAIK-------RGLRTLILAPTRVVAAEMEEALRGLPIRYQTPA-----------IRAEH 74
Query: 179 CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRTRDL 238
+ + L S N +++DEA
Sbjct: 75 TGREIVDLMCHATFTMRLLSPIRVPN-YNLIIMDEAHFTDPASI---------------A 118
Query: 239 CRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHP 298
RG G + T + P
Sbjct: 119 ARGYISTRVEMGEAAGIFMTATP------------------------PGSRDPFPQSNAP 154
Query: 299 VVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNT 358
++ I ER H + + + + + +
Sbjct: 155 IMDEEREIPERSWNSGHEWVT------------------------DFKGKTVWFVPSIKA 190
Query: 359 CVFLGYVLYFWFILVAGIERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQT 418
+ L V + R F V ++ MG +
Sbjct: 191 GNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTDISEMGANFK--------- 241
Query: 419 LRDFRSGYINVLIASDVASRGLDVEDIK--YVVNYDFPDNTENYVHRIGRTARSTKTGIS 476
+I + + + D + ++ P + R GR R+ K
Sbjct: 242 --------AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEND 293
Query: 477 YTLFT 481
++
Sbjct: 294 QYIYM 298
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 60.3 bits (145), Expect = 2e-11
Identities = 35/106 (33%), Positives = 60/106 (56%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
+ I+ D Q RD +++FRSG +LI++D+ +RG+DV+ + V+NYD P N ENY
Sbjct: 52 FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENY 111
Query: 461 VHRIGRTARSTKTGISYTLFTPLNGNKAQDLIDILNEAHQFVPDRL 506
+HRIGR R + G++ T + ++L + + +P +
Sbjct: 112 IHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 157
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 59.8 bits (144), Expect = 4e-11
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Query: 377 ERWVFMEINHNGTETKHYGVSSSLYRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVA 436
ER + + E + + + +H + R + +RD R G +VL+ ++
Sbjct: 32 ERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 91
Query: 437 SRGLDVEDIKYVVNYDFPDNTENYVHR--IGRTARSTKTG 474
GLD+ ++ V D R I R+ +
Sbjct: 92 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 131
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 55.7 bits (133), Expect = 7e-10
Identities = 38/93 (40%), Positives = 56/93 (60%)
Query: 404 MGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENYVHR 463
IHGD SQ R++ +R F+ I +LIA+DV SRG+DV D+ V+NY P N E+Y+HR
Sbjct: 56 GAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHR 115
Query: 464 IGRTARSTKTGISYTLFTPLNGNKAQDLIDILN 496
IGRT R+ K G + ++ K + + +
Sbjct: 116 IGRTGRAGKKGKAISIINRREYKKLRYIERAMK 148
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 54.7 bits (130), Expect = 3e-09
Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 36/198 (18%)
Query: 39 KNSGYGKPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKE 98
K + KPT IQ + P L G ++G +QTG+GKT + +
Sbjct: 17 KTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLL------------------- 57
Query: 99 ESSWWNNNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTM 158
+ + + A+ ++ + + +
Sbjct: 58 ---PIMEKIKPERAEVQAVITAPTRE--------------LATQIYHETLKITKFCPKDR 100
Query: 159 RIRHACLYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRML 218
I CL GGT K L IV+ TPGR+ DF+ +V+ LV+DEAD ML
Sbjct: 101 MIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 160
Query: 219 DMGFEPQIRKIIQMTRTR 236
DMGF + +I
Sbjct: 161 DMGFITDVDQIAARMPKD 178
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 53.5 bits (128), Expect = 5e-09
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYD-----FPD 455
RA +H + + R +RD R G+ + L+ ++ GLD+ ++ V D F
Sbjct: 56 IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLR 115
Query: 456 NTENYVHRIGRTAR 469
+ + + IGR AR
Sbjct: 116 SERSLIQTIGRAAR 129
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 51.2 bits (122), Expect = 2e-08
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 414 NRDQTLRDFRSGYINVLIASDVASRGLDVED---IKYVVNYDFPDNTENYVHRIGRTARS 470
R + + V++A+D G + I + P + + R GRT R
Sbjct: 66 YRGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGRG 125
Query: 471 TKTGISYTLFTP 482
K GI Y P
Sbjct: 126 -KPGI-YRFVAP 135
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 47.0 bits (110), Expect = 1e-06
Identities = 17/82 (20%), Positives = 34/82 (41%)
Query: 401 YRAMGIHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVVNYDFPDNTENY 460
A H R F+ + +++A+ G++ ++++VV++D P N E+Y
Sbjct: 55 ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY 114
Query: 461 VHRIGRTARSTKTGISYTLFTP 482
GR R + + P
Sbjct: 115 YQETGRAGRDGLPAEAMLFYDP 136
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 43.6 bits (101), Expect = 2e-05
Identities = 45/247 (18%), Positives = 81/247 (32%), Gaps = 55/247 (22%)
Query: 45 KPTSIQAQSWPICLSGRDLIGIAQTGSGKTLSLTIENTQVARGSQCGRSNTSKEESSWWN 104
+P Q + C + + + TG GKTL
Sbjct: 9 QPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLI---------------------------- 39
Query: 105 NNVVDVKYILPALYHILKMPKLEEGDGPIALVLAPTRELAQQIQAVISIFSRTMRIRHAC 164
++ A Y + K G L+LAPT+ L Q +
Sbjct: 40 -------AMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85
Query: 165 LYGGTSKMYQTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEP 224
L G S +++ A+++VATP + + L +G ++ ++ +V DEA R +
Sbjct: 86 LTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYV 144
Query: 225 QIRKIIQMTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEP 284
I + + L G + A+PG + + N+ E P
Sbjct: 145 FIAREYKRQAKNPLVIG---LTASPGSTPEKIMEVINNLGIEHIEYRSENS--------P 193
Query: 285 QIRKIIQ 291
+R ++
Sbjct: 194 DVRPYVK 200
Score = 27.4 bits (59), Expect = 3.5
Identities = 15/87 (17%), Positives = 35/87 (40%)
Query: 232 MTRTRDLCRGAEIVVATPGRLIDFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQ 291
A+++VATP + + L +G ++ ++ +V DEA R + I + +
Sbjct: 92 PEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYK 151
Query: 292 MTRHAHPVVPVSLFISERRDTILHFLE 318
V+ ++ + I+ +
Sbjct: 152 RQAKNPLVIGLTASPGSTPEKIMEVIN 178
Score = 26.3 bits (56), Expect = 7.8
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 315 HFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFL 362
+ L +G ++ ++ +V DEA R + I + + N V
Sbjct: 114 NDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIG 161
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 41.8 bits (97), Expect = 6e-05
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 406 IHGDKSQWNRDQTLRDFRSGYINVLIASDVASRGLDVEDIKYVV-------NYDFPDNTE 458
H R FR G I V++A+ + G+++ + +V Y
Sbjct: 100 HHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVS 159
Query: 459 NYVHRIGRTARSTK--TGISYTLFTP 482
Y GR R G + +
Sbjct: 160 EYKQMAGRAGRPGMDERGEAIIIVGK 185
>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 31.4 bits (70), Expect = 0.066
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 263 VNRITYLVLDEADRMLDMG-FEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLES-G 320
VNR+ L EA R+ + G + +P+ P L DT ++
Sbjct: 4 VNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWH 63
Query: 321 TTNVNRITYLVLDEADRMLDMG 342
+ + ++++
Sbjct: 64 EMDAENPLHQPSPSLNKLVAEN 85
>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha
subunit, C-terminal domain {Pseudomonas fragi [TaxId:
296]}
Length = 124
Score = 30.9 bits (69), Expect = 0.15
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 263 VNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTILHFLES 319
VNR+ + +++ G + M + P+ P L DT H +
Sbjct: 4 VNRVLFPYFGGFAKLVSAGVDFVRI-DKVMEKFGWPMGPAYLMDVVGIDTGHHGRDV 59
Score = 26.7 bits (58), Expect = 3.9
Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 11/86 (12%)
Query: 324 VNRITYLVLDEADRMLDMGFEPQ-IRKIIQMTRFNTCVF-------LGYVLYFWFILVAG 375
VNR+ + +++ G + I K+++ + + + ++ G
Sbjct: 4 VNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEG 63
Query: 376 IERWVF---MEINHNGTETKHYGVSS 398
+ E K G +
Sbjct: 64 FPDRMKDDRRSAIDALYEAKRLGQKN 89
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine
5'-diphospho)-2C-methyl-D-erythritol kinase IspE
{Thermus thermophilus [TaxId: 274]}
Length = 148
Score = 31.2 bits (70), Expect = 0.16
Identities = 15/85 (17%), Positives = 24/85 (28%)
Query: 292 MTRHAHPVVPVSLFISERRDTILHFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKII 351
M R A V + L + RR+ H L + + LV++ L +
Sbjct: 1 MERLAPAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPVSSGLHFQGPYGRENLA 60
Query: 352 QMTRFNTCVFLGYVLYFWFILVAGI 376
G +L I
Sbjct: 61 YRAASLYLEAAGQPGGVRILLEKRI 85
>d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus
amyloliquefaciens [TaxId: 1390]}
Length = 89
Score = 26.3 bits (58), Expect = 2.8
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 477 YTLFTPLNGNKAQDLIDILNEAHQFVPDRLLLLA 510
+ L N A+ ++ + EA D ++L+
Sbjct: 56 FEQSKQLTENGAESVLQVFREAKAEGCDITIILS 89
>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha
subunit, C-terminal domain {Pseudomonas fragi [TaxId:
296]}
Length = 95
Score = 25.6 bits (56), Expect = 6.8
Identities = 9/57 (15%), Positives = 18/57 (31%)
Query: 324 VNRITYLVLDEADRMLDMGFEPQIRKIIQMTRFNTCVFLGYVLYFWFILVAGIERWV 380
+N + + E R L+ G + + L +I G+ +V
Sbjct: 8 INWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFV 64
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 26.3 bits (56), Expect = 9.5
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 22/96 (22%)
Query: 255 FLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKIIQMTRHAHPVVPVSLFISERRDTIL 314
L I+ L+LDE LD ++ I++ P V + +S +
Sbjct: 292 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV---ILVSHDEE--- 345
Query: 315 HFLESGTTNVNRITYLVLDEADRMLDMGFEPQIRKI 350
+ D AD ++ + E K+
Sbjct: 346 ----------------LKDAADHVIRISLENGSSKV 365
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.407
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,008,606
Number of extensions: 95145
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 73
Length of query: 537
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 447
Effective length of database: 1,171,896
Effective search space: 523837512
Effective search space used: 523837512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (26.0 bits)