BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10681
(67 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMD|A Chain A, M335v Mutant Structure Of Mouse Carnitine
Octanoyltransferase
pdb|1XMD|B Chain B, M335v Mutant Structure Of Mouse Carnitine
Octanoyltransferase
Length = 612
Score = 32.7 bits (73), Expect = 0.046, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 21/74 (28%)
Query: 1 MARNYKYARTRTVRN--------------------EDKIRLLKAAAGAHQRGYQDAMCGK 40
M R + + RT TVR+ E + ++L+A A H + +D GK
Sbjct: 443 MTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFA-KHNKMMKDCSHGK 501
Query: 41 GIDRHLFCLYVVSK 54
G DRHL L +++K
Sbjct: 502 GFDRHLLGLLLIAK 515
>pdb|1XMC|A Chain A, C323m Mutant Structure Of Mouse Carnitine
Octanoyltransferase
pdb|1XMC|B Chain B, C323m Mutant Structure Of Mouse Carnitine
Octanoyltransferase
Length = 612
Score = 32.7 bits (73), Expect = 0.046, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 21/74 (28%)
Query: 1 MARNYKYARTRTVRN--------------------EDKIRLLKAAAGAHQRGYQDAMCGK 40
M R + + RT TVR+ E + ++L+A A H + +D GK
Sbjct: 443 MTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFA-KHNKMMKDCSHGK 501
Query: 41 GIDRHLFCLYVVSK 54
G DRHL L +++K
Sbjct: 502 GFDRHLLGLLLIAK 515
>pdb|1NM8|A Chain A, Structure Of Human Carnitine Acetyltransferase: Molecular
Basis For Fatty Acyl Transfer
pdb|1S5O|A Chain A, Structural And Mutational Characterization Of L-Carnitine
Binding To Human Carnitine Acetyltransferase
Length = 616
Score = 32.0 bits (71), Expect = 0.090, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 12 TVRNEDKIRLLKAAAGAHQRGYQD-AMCGKGIDRHLFCL 49
+V K+ LL+ A AH RGY D A+ G+ DRHL L
Sbjct: 465 SVTEHQKVELLRKAVQAH-RGYTDRAIRGEAFDRHLLGL 502
>pdb|1T7N|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Crat
pdb|1T7O|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine
Length = 618
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 12 TVRNEDKIRLLKAAAGAHQRGYQD-AMCGKGIDRHLFCL 49
TV + K+ LL+ A AH R Y D A+ G+ DRHL L
Sbjct: 478 TVPEQQKVELLRKAVQAH-RAYTDRAIRGEAFDRHLLGL 515
>pdb|1T7Q|A Chain A, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
pdb|1T7Q|B Chain B, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
Length = 618
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 12 TVRNEDKIRLLKAAAGAHQRGYQD-AMCGKGIDRHLFCL 49
TV + K+ LL+ A AH R Y D A+ G+ DRHL L
Sbjct: 478 TVPEQQKVELLRKAVQAH-RAYTDRAIRGEAFDRHLLGL 515
>pdb|1NDF|A Chain A, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDF|B Chain B, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDI|A Chain A, Carnitine Acetyltransferase In Complex With Coa
pdb|1NDI|B Chain B, Carnitine Acetyltransferase In Complex With Coa
Length = 596
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 12 TVRNEDKIRLLKAAAGAHQRGYQD-AMCGKGIDRHLFCL 49
TV + K+ LL+ A AH R Y D A+ G+ DRHL L
Sbjct: 457 TVPEQQKVELLRKAVQAH-RAYTDRAIRGEAFDRHLLGL 494
>pdb|2H3W|A Chain A, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
pdb|2H3W|B Chain B, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
Length = 599
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 12 TVRNEDKIRLLKAAAGAHQRGYQD-AMCGKGIDRHLFCL 49
TV + K+ LL+ A AH R Y D A+ G+ DRHL L
Sbjct: 460 TVPEQQKVELLRKAVQAH-RAYTDRAIRGEAFDRHLLGL 497
>pdb|2H3P|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3P|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3U|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
pdb|2H3U|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
Length = 599
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 12 TVRNEDKIRLLKAAAGAHQRGYQD-AMCGKGIDRHLFCL 49
TV + K+ LL+ A AH R Y D A+ G+ DRHL L
Sbjct: 460 TVPEQQKVELLRKAVQAH-RAYTDRAIRGEAFDRHLLGL 497
>pdb|1NDB|A Chain A, Crystal Structure Of Carnitine Acetyltransferase
pdb|1NDB|B Chain B, Crystal Structure Of Carnitine Acetyltransferase
Length = 596
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 12 TVRNEDKIRLLKAAAGAHQRGYQD-AMCGKGIDRHLFCL 49
TV + K+ LL+ A AH R Y D A+ G+ DRHL L
Sbjct: 457 TVPEQQKVELLRKAVQAH-RAYTDRAIRGEAFDRHLLGL 494
>pdb|1XL7|A Chain A, Crystal Structure Of Mouse Carnitine Octanoyltransferase
pdb|1XL7|B Chain B, Crystal Structure Of Mouse Carnitine Octanoyltransferase
pdb|1XL8|A Chain A, Crystal Structure Of Mouse Carnitine Octanoyltransferase
In Complex With Octanoylcarnitine
pdb|1XL8|B Chain B, Crystal Structure Of Mouse Carnitine Octanoyltransferase
In Complex With Octanoylcarnitine
Length = 612
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 21/72 (29%)
Query: 3 RNYKYARTRTVRN--------------------EDKIRLLKAAAGAHQRGYQDAMCGKGI 42
R + + RT TVR+ E + + L+A A H + +D GKG
Sbjct: 445 RYFYHGRTETVRSCTVEAVRWCQSXQDPSASLLERQQKXLEAFA-KHNKXXKDCSHGKGF 503
Query: 43 DRHLFCLYVVSK 54
DRHL L +++K
Sbjct: 504 DRHLLGLLLIAK 515
>pdb|1WSH|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSH|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSH|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSH|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87A)
pdb|1WSE|A Chain A, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48a) With Mn2+
pdb|1WSE|B Chain B, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48a) With Mn2+
Length = 155
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 2 ARNYKYARTRTVRNEDKIRLLKAAAGAHQ 30
AR +K A + V+N D + L AA G HQ
Sbjct: 87 ARGWKTADKKPVKNVDLWQRLDAALGQHQ 115
>pdb|1WSJ|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|E Chain E, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|F Chain F, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|G Chain G, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
pdb|1WSJ|H Chain H, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(K87aH124A)
Length = 155
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 2 ARNYKYARTRTVRNEDKIRLLKAAAGAHQ 30
AR +K A + V+N D + L AA G HQ
Sbjct: 87 ARGWKTADKKPVKNVDLWQRLDAALGQHQ 115
>pdb|1WSF|A Chain A, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
pdb|1WSF|B Chain B, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
pdb|1WSF|C Chain C, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
pdb|1WSF|D Chain D, Co-crystal Structure Of E.coli Rnase Hi Active Site Mutant
(d134a*) With Mn2+
Length = 155
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 2 ARNYKYARTRTVRNEDKIRLLKAAAGAHQ 30
AR +K A + V+N D + L AA G HQ
Sbjct: 87 ARGWKTADKKPVKNVDLWQRLDAALGQHQ 115
>pdb|1WSI|A Chain A, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
pdb|1WSI|B Chain B, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
pdb|1WSI|C Chain C, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
pdb|1WSI|D Chain D, Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aK87AD134N)
pdb|1WSG|A Chain A, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
pdb|1WSG|B Chain B, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
pdb|1WSG|C Chain C, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
pdb|1WSG|D Chain D, Co-Crystal Structure Of E.Coli Rnase Hi Active Site Mutant
(E48aD134N) WITH MN2+
Length = 155
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 2 ARNYKYARTRTVRNEDKIRLLKAAAGAHQ 30
AR +K A + V+N D + L AA G HQ
Sbjct: 87 ARGWKTADKKPVKNVDLWQRLDAALGQHQ 115
>pdb|1G15|A Chain A, Co-Crystal Of E. Coli Rnase Hi With Two Mn2+ Ions Bound In
The The Active Site
Length = 155
Score = 25.8 bits (55), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 2 ARNYKYARTRTVRNEDKIRLLKAAAGAHQ 30
AR +K A + V+N D + L AA G HQ
Sbjct: 87 ARGWKTADKKPVKNVDLWQRLDAALGQHQ 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,833,023
Number of Sequences: 62578
Number of extensions: 55038
Number of successful extensions: 217
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 15
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)