Query psy10681
Match_columns 67
No_of_seqs 104 out of 665
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 15:56:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00755 Carn_acyltransf: Chol 99.9 4.3E-24 9.4E-29 157.3 5.2 65 1-65 431-515 (591)
2 KOG3718|consensus 99.9 2.5E-23 5.3E-28 151.9 5.7 66 1-66 440-525 (609)
3 KOG3717|consensus 99.9 1.5E-22 3.3E-27 149.0 6.1 65 1-65 440-524 (612)
4 KOG3716|consensus 99.8 9.1E-22 2E-26 147.3 0.8 67 1-67 584-669 (764)
5 KOG3719|consensus 99.7 5.7E-18 1.2E-22 124.8 5.9 65 1-65 470-555 (638)
6 PF10108 DNA_pol_B_exo2: Predi 53.6 12 0.00026 25.2 2.1 45 17-64 39-84 (209)
7 KOG2456|consensus 39.9 49 0.0011 25.0 3.7 34 4-37 14-48 (477)
8 PF02954 HTH_8: Bacterial regu 38.6 14 0.0003 18.2 0.5 29 19-47 7-35 (42)
9 PF00887 ACBP: Acyl CoA bindin 37.5 33 0.00071 19.4 2.0 43 21-64 4-50 (87)
10 smart00685 DM14 Repeats in fly 31.3 95 0.0021 16.9 3.5 23 20-42 28-50 (59)
11 PRK10057 rpsV 30S ribosomal su 25.0 25 0.00053 18.1 0.0 8 43-50 7-14 (44)
12 PRK12896 methionine aminopepti 24.9 1.4E+02 0.003 19.5 3.7 31 6-36 3-33 (255)
13 COG4456 VagC Virulence-associa 23.0 30 0.00064 19.9 0.1 13 2-14 3-15 (74)
14 PF06415 iPGM_N: BPG-independe 22.1 57 0.0012 22.2 1.4 19 41-59 43-61 (223)
15 PF11929 DUF3447: Domain of un 21.5 1.1E+02 0.0024 16.6 2.3 31 5-35 14-49 (76)
16 PF11429 Colicin_D: Colicin D; 20.4 66 0.0014 19.1 1.2 23 15-37 20-42 (92)
17 KOG2438|consensus 20.3 1.9E+02 0.0042 22.2 3.9 30 12-41 442-472 (505)
No 1
>PF00755 Carn_acyltransf: Choline/Carnitine o-acyltransferase; InterPro: IPR000542 A number of eukaryotic acetyltransferases can, on the basis of sequence similarities, be grouped together into a family. These enzymes include: Choline o-acetyltransferase 2.3.1.6 from EC, an enzyme that catalyses the biosynthesis of the neurotransmitter acetylcholine []. Carnitine o-acetyltransferase 2.3.1.7 from EC []. Peroxisomal carnitine octanoyltransferase 2.3.1.137 from EC, a fatty acid beta-oxidation pathway enzyme which is involved in the transport of medium-chain acyl-coenzyme A's from peroxisome to mitochondria []. Mitochondrial carnitine palmitoyltransferases I and II 2.3.1.21 from EC (CPT), enzymes involved in fatty acid metabolism and transport []. Mycoplasma pneumoniae putative acetyltransferase C09_orf600. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 2DEB_B 2H4T_A 2FW3_A 2RCU_B 2FYO_A 1S5O_A 1NM8_A 1T7Q_B 2H3W_B 1NDI_B ....
Probab=99.89 E-value=4.3e-24 Score=157.26 Aligned_cols=65 Identities=40% Similarity=0.629 Sum_probs=57.0
Q ss_pred CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681 1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP 61 (67)
Q Consensus 1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p 61 (67)
|||+|++||||+|| .++|+++|++|++.|++++++|++|+||||||+||+++|++.|+++|
T Consensus 431 stR~F~~GRTE~iRs~T~es~~fv~a~~~~~~~~~e~~~ll~~A~~~H~~~~~~a~~G~G~dRHL~~L~~~a~~~~~~~P 510 (591)
T PF00755_consen 431 STRHFRHGRTETIRSCTPESLAFVKAMDDPSASKEEKRELLRAAVKAHKQYIKEAMRGKGFDRHLFGLRCLAKENGIELP 510 (591)
T ss_dssp E-TTSTT--EEEEES--HHHHHHHHHHCTTTS-HHHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHTTSS--
T ss_pred hHHHhHhhCCCeeccCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhccchh
Confidence 69999999999999 67899999999999999999999999999999999999999999999
Q ss_pred -Cccc
Q psy10681 62 -FLKI 65 (67)
Q Consensus 62 -f~~~ 65 (67)
||++
T Consensus 511 ~lf~d 515 (591)
T PF00755_consen 511 ELFSD 515 (591)
T ss_dssp HHHHS
T ss_pred hhccC
Confidence 6664
No 2
>KOG3718|consensus
Probab=99.88 E-value=2.5e-23 Score=151.87 Aligned_cols=66 Identities=41% Similarity=0.587 Sum_probs=62.9
Q ss_pred CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681 1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP 61 (67)
Q Consensus 1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p 61 (67)
|||+|+||||||+| .++...+|..|+++|++.|++|+.|+||||||+||++++.+.++++|
T Consensus 440 stR~fyhGRTETvRscTs~~vrf~~a~~n~qvn~e~lk~lf~~A~n~Hn~lM~d~~~GkG~DRHl~GL~laa~e~~~~iP 519 (609)
T KOG3718|consen 440 STRQFYHGRTETVRSCTSAVVRFLRASSNKQVNDESLKRLFRRAVNEHNHLMNDARKGKGIDRHLFGLWLAAYESKMDIP 519 (609)
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCch
Confidence 69999999999999 46888999999999999999999999999999999999999999999
Q ss_pred -Ccccc
Q psy10681 62 -FLKIV 66 (67)
Q Consensus 62 -f~~~~ 66 (67)
||+++
T Consensus 520 efl~dp 525 (609)
T KOG3718|consen 520 EFLDDP 525 (609)
T ss_pred hhhcCc
Confidence 99875
No 3
>KOG3717|consensus
Probab=99.87 E-value=1.5e-22 Score=149.05 Aligned_cols=65 Identities=32% Similarity=0.478 Sum_probs=62.0
Q ss_pred CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681 1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP 61 (67)
Q Consensus 1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p 61 (67)
|+|+|..||||||| .+||.++|++|+.+|+.+++.|++|.||||||+||+++|.|.+.++|
T Consensus 440 slR~F~~GRtdtIRS~s~esL~fv~am~~~~v~~~ek~~llr~Av~~h~~yt~~ai~G~gvDrHLlgLk~~a~e~~~~iP 519 (612)
T KOG3717|consen 440 SLRRFHEGRTDTIRSASTESLEFVKAMDDSSVPKSEKLELLRKAVQAHTKYTKRAIRGNGVDRHLLGLKLMAIENCKPIP 519 (612)
T ss_pred hhhhhcCCcccccccCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCCCcc
Confidence 68999999999999 67999999999999999999999999999999999999999999999
Q ss_pred -Cccc
Q psy10681 62 -FLKI 65 (67)
Q Consensus 62 -f~~~ 65 (67)
||.+
T Consensus 520 elF~d 524 (612)
T KOG3717|consen 520 ELFKD 524 (612)
T ss_pred hhhcC
Confidence 6654
No 4
>KOG3716|consensus
Probab=99.83 E-value=9.1e-22 Score=147.26 Aligned_cols=67 Identities=55% Similarity=0.921 Sum_probs=63.7
Q ss_pred CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681 1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP 61 (67)
Q Consensus 1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p 61 (67)
|||.|+.|||||+| .+++.++|++||++|+.+.++||.|+|||||||+|+++++-.++..|
T Consensus 584 mtRlF~egRTETvRsct~~Sc~FVraMl~~~~T~~~rl~llk~Acd~Hq~~yk~aM~G~GvDRHLF~LyVvskyL~~~SP 663 (764)
T KOG3716|consen 584 MTRLFREGRTETVRSCTIESCDFVRAMLDKNKTKQERLQLLKKACDKHQLNYKEAMTGQGVDRHLFALYVVSKYLGVQSP 663 (764)
T ss_pred HHHHHHhcCCceeeecchhhhHHHHHHhCcccChHHHHHHHHHHHHHHHHHHHHHhhcCCccceeeeeeeehhhcccCCh
Confidence 68999999999999 67999999999999999999999999999999999999999999999
Q ss_pred CccccC
Q psy10681 62 FLKIVH 67 (67)
Q Consensus 62 f~~~~~ 67 (67)
|++.++
T Consensus 664 FL~~v~ 669 (764)
T KOG3716|consen 664 FLDEVL 669 (764)
T ss_pred HHHhhc
Confidence 998653
No 5
>KOG3719|consensus
Probab=99.73 E-value=5.7e-18 Score=124.77 Aligned_cols=65 Identities=28% Similarity=0.455 Sum_probs=55.6
Q ss_pred CccccccCcchhcc-------------------hHHHHHHHHHHHH-HHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCC
Q psy10681 1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAG-AHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDS 60 (67)
Q Consensus 1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~-~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~ 60 (67)
||+-|++||||+|| +..+.+.|..+|. .|.+++++|++|+|+||||+||+++|+..+++.
T Consensus 470 sT~aFk~gRTe~ir~~t~atk~~~~a~l~~s~~~a~kl~~li~~Cs~~H~qltKeasmGqG~DRHl~ALk~la~~e~~~~ 549 (638)
T KOG3719|consen 470 STAAFKNGRTETIRSATQATKEFCEAFLSSSIDSAGKLQQLIDTCSKTHGQLTKEASMGQGYDRHLFALKHLAQKESIPL 549 (638)
T ss_pred hHHHHhcCchhhhhhHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 68999999999999 3345555555555 999999999999999999999999999989999
Q ss_pred C-Cccc
Q psy10681 61 P-FLKI 65 (67)
Q Consensus 61 p-f~~~ 65 (67)
| +|.+
T Consensus 550 pdlf~d 555 (638)
T KOG3719|consen 550 PDLFED 555 (638)
T ss_pred chhhcC
Confidence 9 5553
No 6
>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins.
Probab=53.64 E-value=12 Score=25.21 Aligned_cols=45 Identities=13% Similarity=0.290 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC-Ccc
Q psy10681 17 DKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP-FLK 64 (67)
Q Consensus 17 ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p-f~~ 64 (67)
+-.+.|-+.+++|.-. .-.=||+|+|=-.+-+|.+. .|++.| +++
T Consensus 39 ~lL~~F~~~~~~~~p~-LVs~NG~~FDlP~L~~Ral~--~gi~~p~~~~ 84 (209)
T PF10108_consen 39 ELLQDFFDLVEKYNPQ-LVSFNGRGFDLPVLCRRALI--HGISAPRYLD 84 (209)
T ss_pred HHHHHHHHHHHhCCCe-EEecCCccCCHHHHHHHHHH--hCCCCchhhh
Confidence 3456677777766632 24669999999999999776 578888 665
No 7
>KOG2456|consensus
Probab=39.94 E-value=49 Score=25.04 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=27.6
Q ss_pred ccccCcchhcc-hHHHHHHHHHHHHHHHHHHHHHH
Q psy10681 4 NYKYARTRTVR-NEDKIRLLKAAAGAHQRGYQDAM 37 (67)
Q Consensus 4 ~F~~GRtE~iR-~~ek~~~l~~A~~~H~~~~~~a~ 37 (67)
.|..|||.... ..+..+.|..+++.|.+.+.+|+
T Consensus 14 ~F~sGrtr~~efR~~QL~~L~r~i~e~e~~i~~Al 48 (477)
T KOG2456|consen 14 AFSSGRTRPLEFRKQQLEALYRMIQENEKEIIEAL 48 (477)
T ss_pred HHhcCCcCChHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 48889998887 67777888888888888777766
No 8
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=38.65 E-value=14 Score=18.20 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHH
Q psy10681 19 IRLLKAAAGAHQRGYQDAMCGKGIDRHLF 47 (67)
Q Consensus 19 ~~~l~~A~~~H~~~~~~a~~G~g~drHL~ 47 (67)
.+.+..|++.+..+...|..=.||.|.=+
T Consensus 7 ~~~i~~aL~~~~gn~~~aA~~Lgisr~tL 35 (42)
T PF02954_consen 7 KQLIRQALERCGGNVSKAARLLGISRRTL 35 (42)
T ss_dssp HHHHHHHHHHTTT-HHHHHHHHTS-HHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHCCCHHHH
Confidence 46788899999988888888778777544
No 9
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=37.51 E-value=33 Score=19.36 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcC---CCCC-Ccc
Q psy10681 21 LLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLE---VDSP-FLK 64 (67)
Q Consensus 21 ~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~---~~~p-f~~ 64 (67)
.|..|++.-+............-=.|+||+.+|.. | .+.| ++|
T Consensus 4 ~F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~-Gd~~~~~P~~~d 50 (87)
T PF00887_consen 4 EFEAAVEFVSNLPKKSQLSNDDKLELYALYKQATH-GDCDTPRPGFFD 50 (87)
T ss_dssp HHHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHT-SS--S-CTTTTC
T ss_pred HHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHh-CCCcCCCCcchh
Confidence 45555554443332212222334578999999886 4 4556 665
No 10
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=31.27 E-value=95 Score=16.91 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCh
Q psy10681 20 RLLKAAAGAHQRGYQDAMCGKGI 42 (67)
Q Consensus 20 ~~l~~A~~~H~~~~~~a~~G~g~ 42 (67)
..+-..++.-...++.+..|+-|
T Consensus 28 r~~~R~~K~~~~~I~~~~aG~pV 50 (59)
T smart00685 28 RRHLRIAKQFDDAIKAARAGRPV 50 (59)
T ss_pred HHHHHHHhhHHHHHHHHHCCCCC
Confidence 33333344444444444444443
No 11
>PRK10057 rpsV 30S ribosomal subunit S22; Reviewed
Probab=25.03 E-value=25 Score=18.12 Aligned_cols=8 Identities=38% Similarity=0.601 Sum_probs=6.4
Q ss_pred hHHHHHHH
Q psy10681 43 DRHLFCLY 50 (67)
Q Consensus 43 drHL~gL~ 50 (67)
-||++||-
T Consensus 7 ARHiLGl~ 14 (44)
T PRK10057 7 ARHILGLD 14 (44)
T ss_pred hhhhhccc
Confidence 48999993
No 12
>PRK12896 methionine aminopeptidase; Reviewed
Probab=24.85 E-value=1.4e+02 Score=19.51 Aligned_cols=31 Identities=3% Similarity=0.152 Sum_probs=22.5
Q ss_pred ccCcchhcchHHHHHHHHHHHHHHHHHHHHH
Q psy10681 6 KYARTRTVRNEDKIRLLKAAAGAHQRGYQDA 36 (67)
Q Consensus 6 ~~GRtE~iR~~ek~~~l~~A~~~H~~~~~~a 36 (67)
+.||+-.|.+++=++++++|++...+.+..+
T Consensus 3 ~~~~~~~vKs~~Ei~~~r~a~~i~~~~~~~~ 33 (255)
T PRK12896 3 QEGRGMEIKSPRELEKMRKIGRIVATALKEM 33 (255)
T ss_pred CcCCceeECCHHHHHHHHHHHHHHHHHHHHH
Confidence 4688877776677888888888766655443
No 13
>COG4456 VagC Virulence-associated protein and related proteins [Function unknown]
Probab=22.95 E-value=30 Score=19.89 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=11.1
Q ss_pred ccccccCcchhcc
Q psy10681 2 ARNYKYARTRTVR 14 (67)
Q Consensus 2 ~r~F~~GRtE~iR 14 (67)
+..|..||+..||
T Consensus 3 ~klF~snrSQAVR 15 (74)
T COG4456 3 AKLFRSNRSQAVR 15 (74)
T ss_pred eeEeecCCeeeEe
Confidence 4679999999998
No 14
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=22.14 E-value=57 Score=22.21 Aligned_cols=19 Identities=32% Similarity=0.329 Sum_probs=14.6
Q ss_pred ChhHHHHHHHHHHHhcCCC
Q psy10681 41 GIDRHLFCLYVVSKYLEVD 59 (67)
Q Consensus 41 g~drHL~gL~~~a~~~~~~ 59 (67)
+-.+||++|-.+|++.|++
T Consensus 43 Sh~~Hl~al~~~a~~~gv~ 61 (223)
T PF06415_consen 43 SHIDHLFALIKLAKKQGVK 61 (223)
T ss_dssp --HHHHHHHHHHHHHTT-S
T ss_pred ccHHHHHHHHHHHHHcCCC
Confidence 4589999999999998876
No 15
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=21.48 E-value=1.1e+02 Score=16.63 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=21.0
Q ss_pred cccCcchhcc-----hHHHHHHHHHHHHHHHHHHHH
Q psy10681 5 YKYARTRTVR-----NEDKIRLLKAAAGAHQRGYQD 35 (67)
Q Consensus 5 F~~GRtE~iR-----~~ek~~~l~~A~~~H~~~~~~ 35 (67)
+..|-.|.|+ ..--...+..|++.|+....+
T Consensus 14 i~GGN~eII~~c~~~~~~~~~~l~~AI~~H~n~i~~ 49 (76)
T PF11929_consen 14 IIGGNFEIINICLKKNKPDNDCLEYAIKSHNNEIAD 49 (76)
T ss_pred HhCCCHHHHHHHHHHhccHHHHHHHHHHHhhHHHHH
Confidence 4567778887 111246799999999876544
No 16
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=20.40 E-value=66 Score=19.13 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy10681 15 NEDKIRLLKAAAGAHQRGYQDAM 37 (67)
Q Consensus 15 ~~ek~~~l~~A~~~H~~~~~~a~ 37 (67)
+.+-.+.|++||+.|........
T Consensus 20 N~~t~~~F~~aI~~hi~~~~tv~ 42 (92)
T PF11429_consen 20 NKETLEEFEDAIKEHIKNPDTVE 42 (92)
T ss_dssp SHHHHHHHHHHHHHHHH-TT-EE
T ss_pred ChhhHHHHHHHHHHHhCCCCeEe
Confidence 56778999999999988765533
No 17
>KOG2438|consensus
Probab=20.34 E-value=1.9e+02 Score=22.17 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=25.3
Q ss_pred hcc-hHHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy10681 12 TVR-NEDKIRLLKAAAGAHQRGYQDAMCGKG 41 (67)
Q Consensus 12 ~iR-~~ek~~~l~~A~~~H~~~~~~a~~G~g 41 (67)
.|+ .+|-.++++..+.+|.+.+.++.+|+-
T Consensus 442 ~I~dp~eIe~lv~~vm~~h~k~ve~~rsGk~ 472 (505)
T KOG2438|consen 442 QIRDPAEIEELVRSVMEKHPKQVEQLRSGKT 472 (505)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 444 556678899999999999999999986
Done!