Query psy10681
Match_columns 67
No_of_seqs 104 out of 665
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 15:56:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xl7_A COT, peroxisomal carnit 99.9 4.6E-25 1.6E-29 162.5 6.8 65 1-65 443-527 (612)
2 1nm8_A Carnitine O-acetyltrans 99.9 6.1E-25 2.1E-29 162.1 5.9 65 1-65 435-519 (616)
3 2deb_A CPT II, carnitine O-pal 99.9 1.5E-24 5.3E-29 160.9 6.9 65 1-65 485-571 (653)
4 1t1u_A Choline O-acetyltransfe 99.9 1.2E-24 4.1E-29 161.1 5.9 65 1-65 449-535 (639)
5 1st7_A ACBP, acyl-COA-binding 26.2 55 0.0019 17.9 2.5 20 45-64 26-48 (86)
6 2cb8_A Acyl-COA-binding protei 25.2 61 0.0021 17.8 2.6 21 44-64 26-49 (87)
7 1hbk_A ACBP, acyl-COA binding 23.4 63 0.0022 17.7 2.4 20 45-64 29-51 (89)
8 3fp5_A Acyl-COA binding protei 20.3 77 0.0026 18.2 2.4 20 45-64 33-55 (106)
9 2lbb_A Acyl COA binding protei 17.5 70 0.0024 18.1 1.8 22 43-64 34-58 (96)
10 2cop_A Acyl-coenzyme A binding 15.5 1.2E+02 0.0041 17.4 2.5 21 44-64 32-55 (109)
No 1
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Probab=99.91 E-value=4.6e-25 Score=162.51 Aligned_cols=65 Identities=31% Similarity=0.453 Sum_probs=61.3
Q ss_pred CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681 1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP 61 (67)
Q Consensus 1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p 61 (67)
|||+|++||||||| .++|+++|++|+++|++++++|+.|+|||||||||+++|++.|+++|
T Consensus 443 stR~F~~GRTEtiRs~T~es~~fv~am~~~~~~~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~~g~~~P 522 (612)
T 1xl7_A 443 MTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVP 522 (612)
T ss_dssp ECTTSTTCCEEEEECCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHTTCCCC
T ss_pred hcccCCCCCcCccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCCCCc
Confidence 69999999999999 48999999999999999999999999999999999999999999999
Q ss_pred -Cccc
Q psy10681 62 -FLKI 65 (67)
Q Consensus 62 -f~~~ 65 (67)
||.+
T Consensus 523 ~lF~d 527 (612)
T 1xl7_A 523 ELFED 527 (612)
T ss_dssp GGGTS
T ss_pred hhhcC
Confidence 5553
No 2
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=99.91 E-value=6.1e-25 Score=162.08 Aligned_cols=65 Identities=31% Similarity=0.419 Sum_probs=61.3
Q ss_pred CccccccCcchhcc-------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCCCC
Q psy10681 1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSP 61 (67)
Q Consensus 1 s~r~F~~GRtE~iR-------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~~p 61 (67)
|||+|++||||||| .+||+++|++|+++|++++++|++|+|||||||||+++|++.|+++|
T Consensus 435 stR~F~~GRTEtiRs~T~es~~Fv~am~~~~~~~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~~g~~~P 514 (616)
T 1nm8_A 435 SLRMFHLGRTDTIRSASMDSLTFVKAMDDSSVTEHQKVELLRKAVQAHRGYTDRAIRGEAFDRHLLGLKLQAIEDLVSTP 514 (616)
T ss_dssp ECTTSTTCCEEEEECCCHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHTTCCCC
T ss_pred ccccCCCCCccccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCc
Confidence 69999999999999 57999999999999999999999999999999999999999999999
Q ss_pred -Cccc
Q psy10681 62 -FLKI 65 (67)
Q Consensus 62 -f~~~ 65 (67)
||.+
T Consensus 515 ~lF~d 519 (616)
T 1nm8_A 515 DIFMD 519 (616)
T ss_dssp HHHHS
T ss_pred ccccC
Confidence 5543
No 3
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Probab=99.90 E-value=1.5e-24 Score=160.88 Aligned_cols=65 Identities=23% Similarity=0.376 Sum_probs=61.3
Q ss_pred CccccccCcchhcc---------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCC
Q psy10681 1 MARNYKYARTRTVR---------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVD 59 (67)
Q Consensus 1 s~r~F~~GRtE~iR---------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~ 59 (67)
|||.|++||||||| .+||+++|++|+++|++++++|++|+|||||||||+++|++.|++
T Consensus 485 stR~F~~GRTEtiRs~T~es~~Fv~am~~~~~~~~~~ek~~ll~~A~~~H~~~~k~a~~G~G~DRHL~gL~~~a~~~g~~ 564 (653)
T 2deb_A 485 STAAFKHGRTETIRPASIFTKRCSEAFVRDPSKHSVGELQHMMAECSKYHGQLTKEAAMGQGFDRHLYALRYLATARGLN 564 (653)
T ss_dssp ECTTSBTCCEEEECCCCHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHTTCC
T ss_pred hccccCCCCccccccCCHHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCCC
Confidence 69999999999999 368999999999999999999999999999999999999999999
Q ss_pred CC-Cccc
Q psy10681 60 SP-FLKI 65 (67)
Q Consensus 60 ~p-f~~~ 65 (67)
+| ||.+
T Consensus 565 ~P~lF~D 571 (653)
T 2deb_A 565 LPELYLD 571 (653)
T ss_dssp CCGGGGS
T ss_pred CchhhcC
Confidence 99 6664
No 4
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Probab=99.90 E-value=1.2e-24 Score=161.05 Aligned_cols=65 Identities=26% Similarity=0.399 Sum_probs=61.2
Q ss_pred CccccccCcchhcc---------------------hHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCC
Q psy10681 1 MARNYKYARTRTVR---------------------NEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVD 59 (67)
Q Consensus 1 s~r~F~~GRtE~iR---------------------~~ek~~~l~~A~~~H~~~~~~a~~G~g~drHL~gL~~~a~~~~~~ 59 (67)
|||+|++||||||| .++|+++|++|+++|++++++|+.|+|||||||||+++|++.|++
T Consensus 449 stR~F~~GRTEtiRs~T~es~~Fv~am~~~~~~~~~~ek~~ll~~A~~~H~~~~~~a~~G~G~DRHL~gL~~~a~~~g~~ 528 (639)
T 1t1u_A 449 SIRRFQEGRVDNIRSATPEALAFVQAMTDHKAAMPASEKLQLLQTAMQAQTEYTVMAITGMAIDNHLLALRELARDLCKE 528 (639)
T ss_dssp ECTTSTTCCEEEECCCCHHHHHHHHTSSSSCSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCS
T ss_pred hhccccCCCccccccCCHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcCCC
Confidence 69999999999999 378999999999999999999999999999999999999999999
Q ss_pred CC-Cccc
Q psy10681 60 SP-FLKI 65 (67)
Q Consensus 60 ~p-f~~~ 65 (67)
+| ||.+
T Consensus 529 ~P~lF~d 535 (639)
T 1t1u_A 529 PPEMFMD 535 (639)
T ss_dssp CCHHHHS
T ss_pred CcccccC
Confidence 99 6654
No 5
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=26.18 E-value=55 Score=17.88 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=14.0
Q ss_pred HHHHHHHHHHh--cCCCCC-Ccc
Q psy10681 45 HLFCLYVVSKY--LEVDSP-FLK 64 (67)
Q Consensus 45 HL~gL~~~a~~--~~~~~p-f~~ 64 (67)
.|+||+-+|.+ ...+.| +||
T Consensus 26 ~lYalyKQAt~Gd~~~~~Pg~~d 48 (86)
T 1st7_A 26 ELYALYKQATVGDNDKEKPGIFN 48 (86)
T ss_dssp HHHHHHHHHHHCSCCCCCCCSSC
T ss_pred HHHHHHHHHhhCCCCCCCCCccC
Confidence 58889888875 234567 776
No 6
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=25.16 E-value=61 Score=17.78 Aligned_cols=21 Identities=14% Similarity=0.419 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHh--cCCCCC-Ccc
Q psy10681 44 RHLFCLYVVSKY--LEVDSP-FLK 64 (67)
Q Consensus 44 rHL~gL~~~a~~--~~~~~p-f~~ 64 (67)
=.|+||+-+|.+ ...+.| +||
T Consensus 26 L~lYalyKQAt~Gd~~~~~Pg~~d 49 (87)
T 2cb8_A 26 LFIYGHYKQATVGDINTERPGMLD 49 (87)
T ss_dssp HHHHHHHHHHHTCSCCSCCCCTTC
T ss_pred HHHHHHHHhhhhCCCCCCCCCccc
Confidence 368899888875 234567 776
No 7
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=23.41 E-value=63 Score=17.74 Aligned_cols=20 Identities=25% Similarity=0.379 Sum_probs=14.0
Q ss_pred HHHHHHHHHHh--cCCCCC-Ccc
Q psy10681 45 HLFCLYVVSKY--LEVDSP-FLK 64 (67)
Q Consensus 45 HL~gL~~~a~~--~~~~~p-f~~ 64 (67)
.|+||+-+|.+ ...+.| +||
T Consensus 29 ~LYalyKQAt~Gd~~~~~Pg~~d 51 (89)
T 1hbk_A 29 DLYKYYKQSTIGNCNIKEPSAHK 51 (89)
T ss_dssp HHHHHHHHHHTCSCCSCCCCTTS
T ss_pred HHHHHHHHhhcCCCCCCCCCccC
Confidence 68899888875 234567 766
No 8
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=20.30 E-value=77 Score=18.19 Aligned_cols=20 Identities=5% Similarity=0.386 Sum_probs=14.0
Q ss_pred HHHHHHHHHHh--cCCCCC-Ccc
Q psy10681 45 HLFCLYVVSKY--LEVDSP-FLK 64 (67)
Q Consensus 45 HL~gL~~~a~~--~~~~~p-f~~ 64 (67)
-|+||+-+|.. ...+.| +||
T Consensus 33 ~LYalyKQAt~Gd~~~~~Pg~~d 55 (106)
T 3fp5_A 33 YFYKYFKQATVGDVNISRPGLMD 55 (106)
T ss_dssp HHHHHHHHHHTCSCCSCCCCTTC
T ss_pred HHHHHHHHHhcCCCCCCCCCccc
Confidence 58888888885 234567 776
No 9
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=17.55 E-value=70 Score=18.06 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHh--cCCCCC-Ccc
Q psy10681 43 DRHLFCLYVVSKY--LEVDSP-FLK 64 (67)
Q Consensus 43 drHL~gL~~~a~~--~~~~~p-f~~ 64 (67)
-=.|+||+-+|.+ ...+.| +||
T Consensus 34 ~L~LYaLyKQAt~Gd~~~~~Pg~~d 58 (96)
T 2lbb_A 34 KLCFYKYYKQATVGDCNKPKPGMLQ 58 (96)
T ss_dssp TTHHHHHHHHTTTSSCCCCCCCSSC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCccc
Confidence 3478999988875 234567 776
No 10
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.46 E-value=1.2e+02 Score=17.36 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHh--cCCCCC-Ccc
Q psy10681 44 RHLFCLYVVSKY--LEVDSP-FLK 64 (67)
Q Consensus 44 rHL~gL~~~a~~--~~~~~p-f~~ 64 (67)
=.|+||+-+|.+ ...+.| +||
T Consensus 32 L~LYaLyKQAt~Gd~~~~~Pg~~d 55 (109)
T 2cop_A 32 LYLYARYKQVKVGNCNTPKPSFFD 55 (109)
T ss_dssp HHHHHHHHHHHTCSCCSCCCCSSC
T ss_pred HHHHHHHHHhhcCCCCCCCCCccC
Confidence 368899888875 234557 776
Done!