RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10681
         (67 letters)



>gnl|CDD|216101 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase. 
          Length = 590

 Score = 65.8 bits (161), Expect = 1e-14
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 19/80 (23%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
             R + + RT T+R                    E+K +LLK A   H +  ++AM GKG
Sbjct: 430 STRMFLHGRTETIRSVTTESLEFVQAMLSPSASKEEKRQLLKKACKKHVKYTKEAMTGKG 489

Query: 42  IDRHLFCLYVVSKYLEVDSP 61
           IDRHLF L +++K L V+SP
Sbjct: 490 IDRHLFGLKLLAKELGVESP 509


>gnl|CDD|238619 cd01294, DHOase, Dihydroorotase (DHOase) catalyzes the reversible
           interconversion of carbamoyl aspartate to
           dihydroorotate, a key reaction in the pyrimidine
           biosynthesis. In contrast to the large polyfunctional
           CAD proteins of higher organisms, this group of DHOases
           is monofunctional and mainly dimeric.
          Length = 335

 Score = 25.3 bits (56), Expect = 2.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 14  RNEDKIRLLKAAAGAHQR 31
           R ED+  L KAA   H +
Sbjct: 219 RPEDREALRKAATSGHPK 236


>gnl|CDD|205692 pfam13514, AAA_27, AAA domain.  This domain is found in a number of
           double-strand DNA break proteins. This domain contains a
           P-loop motif.
          Length = 1118

 Score = 25.1 bits (55), Expect = 2.8
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query: 8   ARTRTVRNEDKIRLLKAAAGAHQRGYQDAMCGKGID 43
           AR R  + E ++ +L+ A  A +  +Q      G+ 
Sbjct: 566 ARRRLEQLEKELEVLELALAALREAWQAQWAAAGLP 601


>gnl|CDD|235474 PRK05451, PRK05451, dihydroorotase; Provisional.
          Length = 345

 Score = 24.3 bits (54), Expect = 5.5
 Identities = 4/18 (22%), Positives = 8/18 (44%)

Query: 14  RNEDKIRLLKAAAGAHQR 31
           R   +  L +AA   + +
Sbjct: 225 RETHRQALREAATSGNPK 242



 Score = 24.3 bits (54), Expect = 6.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 35  DAMCGKGIDRHLFCL 49
           + M   GI  HL+CL
Sbjct: 206 NDMLVGGIRPHLYCL 220


>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit;
           Reviewed.
          Length = 1066

 Score = 24.3 bits (54), Expect = 5.7
 Identities = 6/23 (26%), Positives = 14/23 (60%)

Query: 12  TVRNEDKIRLLKAAAGAHQRGYQ 34
           +VR+ DK  +++ A    + G++
Sbjct: 943 SVRDRDKEEVVELAKRLLELGFK 965


>gnl|CDD|219879 pfam08516, ADAM_CR, ADAM cysteine-rich.  ADAMs are
          membrane-anchored proteases that proteolytically modify
          cell surface and extracellular matrix (ECM) in order to
          alter cell behaviour. It has been shown that the
          cysteine-rich domain of ADAM13 regulates the protein's
          metalloprotease activity.
          Length = 117

 Score = 23.4 bits (51), Expect = 8.7
 Identities = 8/29 (27%), Positives = 9/29 (31%), Gaps = 5/29 (17%)

Query: 34 QDAMCGKGIDRHLFCLYVVSKYLEVDSPF 62
          QD  CGK     L C  V       +   
Sbjct: 66 QDVKCGK-----LQCTNVSELPRLGEHAT 89


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.327    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0783    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,367,912
Number of extensions: 240686
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 8
Length of query: 67
Length of database: 10,937,602
Length adjustment: 38
Effective length of query: 29
Effective length of database: 9,252,150
Effective search space: 268312350
Effective search space used: 268312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)