RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10681
(67 letters)
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central
six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus
norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Length = 653
Score = 53.3 bits (127), Expect = 2e-10
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 21/84 (25%)
Query: 1 MARNYKYARTRTVR---------------------NEDKIRLLKAAAGAHQRGYQDAMCG 39
+K+ RT T+R + ++ + H + ++A G
Sbjct: 485 STAAFKHGRTETIRPASIFTKRCSEAFVRDPSKHSVGELQHMMAECSKYHGQLTKEAAMG 544
Query: 40 KGIDRHLFCLYVVSKYLEVDSPFL 63
+G DRHL+ L ++ ++ P L
Sbjct: 545 QGFDRHLYALRYLATARGLNLPEL 568
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A
{Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A
2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Length = 639
Score = 50.6 bits (120), Expect = 2e-09
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 12 TVRNEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFL 63
+ +K++LL+ A A A+ G ID HL L +++ L + P +
Sbjct: 481 AMPASEKLQLLQTAMQAQTEYTVMAITGMAIDNHLLALRELARDLCKEPPEM 532
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains,
anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP:
c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A*
1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Length = 616
Score = 49.8 bits (118), Expect = 3e-09
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 19/82 (23%)
Query: 1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
R + RT T+R K+ LL+ A AH+ A+ G+
Sbjct: 435 SLRMFHLGRTDTIRSASMDSLTFVKAMDDSSVTEHQKVELLRKAVQAHRGYTDRAIRGEA 494
Query: 42 IDRHLFCLYVVSKYLEVDSPFL 63
DRHL L + + V +P +
Sbjct: 495 FDRHLLGLKLQAIEDLVSTPDI 516
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine,
hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3
c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Length = 612
Score = 49.1 bits (116), Expect = 6e-09
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 19/82 (23%)
Query: 1 MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
M R + + RT TVR ++ + + A H + +D GKG
Sbjct: 443 MTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKG 502
Query: 42 IDRHLFCLYVVSKYLEVDSPFL 63
DRHL L +++K + P L
Sbjct: 503 FDRHLLGLLLIAKEEGLPVPEL 524
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.002
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 15/77 (19%)
Query: 1 MARNYKYARTRTVRNEDKIR---LLKAAAGAHQRGYQDAMC-GKGID-------RHLFCL 49
+ +NY AR R DK L +A + + A+ G+G R L+
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV--AIFGGQGNTDDYFEELRDLYQT 179
Query: 50 Y--VVSKYLEVDSPFLK 64
Y +V ++ + L
Sbjct: 180 YHVLVGDLIKFSAETLS 196
Score = 29.6 bits (66), Expect = 0.055
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 19/52 (36%)
Query: 19 IRLLKAAAGAHQRGYQDAMCGKGIDRHLFC---LYVVSKYLEVDSPFLKIVH 67
+R KA +G Q R F L +++L V SPF H
Sbjct: 393 LRKAKAPSGLDQS------------RIPFSERKLKFSNRFLPVASPF----H 428
>2ovi_A Hypothetical protein CHUX; SETS of 9 antiparallel beta sheet core
flanked by 2 SETS of 3 helices and another 2 SETS of
helices; 2.05A {Escherichia coli O157}
Length = 164
Score = 24.9 bits (54), Expect = 2.0
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 13 VRNEDKIRLLKAA--AGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPF 62
V D I +G H+ GY + G+ H+ + ++ F
Sbjct: 64 VHTADVILEFSGELPSGFHRHGYFNLRGKHGMSGHIK-AENCTHIALIERKF 114
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural
genomics, PSI-2, protein structure initiative; 1.85A
{Pectobacterium carotovorum}
Length = 174
Score = 24.5 bits (53), Expect = 2.7
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 13 VRNEDKIRLLKAA--AGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPF 62
D I K+ G H+ GY + G+ H+ ++ F
Sbjct: 65 SHTADAILEFKSELPTGTHRHGYFNLRGKNGLSGHIR-ATSCQHIAFIERKF 115
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 23.6 bits (52), Expect = 5.5
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 12 TVRNEDKIRLLKAAAGAHQRGYQ 34
+VR DK R++ AA ++G++
Sbjct: 948 SVREGDKERVVDLAAKLLKQGFE 970
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein,
structural genomics, NPPSFA; 1.98A {Homo sapiens}
Length = 143
Score = 23.6 bits (52), Expect = 5.5
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 12 TVRNEDKIRLLKAAAGAHQRGYQ 34
++ + R L A H G++
Sbjct: 30 GIQQSFRPRFLGVAEQLHNEGFK 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.139 0.421
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,036,806
Number of extensions: 47967
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 10
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)