RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10681
         (67 letters)



>d1nm8a2 c.43.1.3 (A:386-599) Carnitine acetyltransferase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 214

 Score = 56.5 bits (136), Expect = 2e-12
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 19/82 (23%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
             R +   RT T+R                      K+ LL+ A  AH+     A+ G+ 
Sbjct: 50  SLRMFHLGRTDTIRSASMDSLTFVKAMDDSSVTEHQKVELLRKAVQAHRGYTDRAIRGEA 109

Query: 42  IDRHLFCLYVVSKYLEVDSPFL 63
            DRHL  L + +    V +P +
Sbjct: 110 FDRHLLGLKLQAIEDLVSTPDI 131


>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 215

 Score = 54.5 bits (131), Expect = 1e-11
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 12  TVRNEDKIRLLKAAAGAHQRGYQDAMCGKGIDRHLFCLYVVSKYLEVDSPFL 63
            +   +K++LL+ A  A       A+ G  ID HL  L  +++ L  + P +
Sbjct: 81  AMPASEKLQLLQTAMQAQTEYTVMAITGMAIDNHLLALRELARDLCKEPPEM 132


>d1xl7a2 c.43.1.3 (A:393-610) Peroxisomal carnitine
           O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 218

 Score = 54.2 bits (130), Expect = 2e-11
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 19/82 (23%)

Query: 1   MARNYKYARTRTVR-------------------NEDKIRLLKAAAGAHQRGYQDAMCGKG 41
           M R + + RT TVR                     ++ + +  A   H +  +D   GKG
Sbjct: 51  MTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKG 110

Query: 42  IDRHLFCLYVVSKYLEVDSPFL 63
            DRHL  L +++K   +  P L
Sbjct: 111 FDRHLLGLLLIAKEEGLPVPEL 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0592    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 246,360
Number of extensions: 8601
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 4
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)