BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10682
(71 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 16 VDNLNGPTGILVAGAKGVIRTML--CNGDYH-AEVIPVDMA 53
+ ++NGP ++VAG G + ++ C + H A IPVD A
Sbjct: 703 IASVNGPRSVVVAGESGPLDELIAECEAEAHKARRIPVDYA 743
>pdb|2KMG|A Chain A, The Structure Of The Klca And Ardb Proteins Show A Novel
Fold And Antirestriction Activity Against Type I Dna
Restriction Systems In Vivo But Not In Vitro
Length = 142
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 18 NLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMA 53
N NG G L A A G++ T+ G AE+ D A
Sbjct: 79 NGNGFRGELSADAAGIVATLFALGQLAAEIADTDAA 114
>pdb|1FH7|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Deoxynojirimycin
pdb|1FH8|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Isofagomine Inhibitor
pdb|1FH9|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Lactam Oxime Inhibitor
pdb|1FHD|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Imidazole Inhibitor
pdb|1J01|A Chain A, Crystal Structure Of The Xylanase Cex With Xylobiose-
Derived Inhibitor Isofagomine Lactam
pdb|1EXP|A Chain A, Beta-1,4-Glycanase Cex-Cd
pdb|2EXO|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Beta-1,4- Glycanase Cex From Cellulomonas Fimi
pdb|2XYL|A Chain A, Cellulomonas Fimi XylanaseCELLULASE COMPLEXED WITH
2-Deoxy- 2-Fluoro-Xylobiose
Length = 312
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 5 TPAWREPLPGWVDNLNG 21
T W LP W NLNG
Sbjct: 81 TLVWHSQLPDWAKNLNG 97
>pdb|3CUF|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellobiose-Like Isofagomine
pdb|3CUG|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotetraose-Like Isofagomine
pdb|3CUH|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Cellotriose-Like Isofagomine
pdb|3CUI|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylotetraose
pdb|3CUJ|A Chain A, Cellulomonas Fimi XylanaseCELLULASE CEX (CF XYN10A) IN
Complex With Sulfur Substituted Beta-1,4 Xylopentaose
Length = 315
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 5 TPAWREPLPGWVDNLNG 21
T W LP W NLNG
Sbjct: 81 TLVWHSQLPDWAKNLNG 97
>pdb|2HIS|A Chain A, Cellulomonas Fimi XylanaseCELLULASE DOUBLE MUTANT
E127aH205N WITH COVALENT CELLOBIOSE
Length = 312
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 5 TPAWREPLPGWVDNLNG 21
T W LP W NLNG
Sbjct: 81 TLVWHSQLPDWAKNLNG 97
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 7 AWREPLPGWVDNL-----NGPTGILVAGAKGVIR 35
A RE L W D L NGP ++V+G G +R
Sbjct: 673 AVRERLRPWQDRLSVAAVNGPRSVVVSGEPGALR 706
>pdb|2G3I|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G3J|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
pdb|2G4F|B Chain B, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT
Length = 313
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 5 TPAWREPLPGWVDNLNGPT 23
T AW PGW+ +L+G T
Sbjct: 82 TLAWHSAQPGWMQSLSGST 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,266,116
Number of Sequences: 62578
Number of extensions: 76379
Number of successful extensions: 118
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 10
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)