Query psy10682
Match_columns 71
No_of_seqs 113 out of 543
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 15:57:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fpf_A Mtnas, putative unchara 48.0 5.3 0.00018 28.2 0.8 15 5-19 259-273 (298)
2 1uuz_A IVY, inhibitor of verte 31.0 14 0.00048 23.7 0.6 15 10-24 27-41 (137)
3 1xs0_A Inhibitor of vertebrate 23.6 16 0.00056 23.3 -0.1 16 9-25 25-40 (136)
4 1jmx_G Amine dehydrogenase; ox 23.4 25 0.00086 20.6 0.7 15 12-26 12-27 (79)
5 1pby_C Quinohemoprotein amine 23.4 25 0.00086 20.6 0.7 15 12-26 12-27 (79)
6 4dqv_A Probable peptide synthe 22.6 58 0.002 23.2 2.7 22 42-63 323-344 (478)
7 3esm_A Uncharacterized protein 20.6 30 0.001 22.4 0.7 16 4-19 43-58 (152)
8 1i24_A Sulfolipid biosynthesis 19.2 42 0.0014 22.6 1.3 32 31-62 259-290 (404)
9 2lju_A Putative oxidoreductase 18.7 39 0.0013 20.7 0.9 15 6-20 43-57 (108)
10 2jya_A AGR_C_3324P, uncharacte 17.9 41 0.0014 20.5 0.9 19 6-24 35-53 (106)
No 1
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=48.04 E-value=5.3 Score=28.21 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=5.0
Q ss_pred eeeccCCccccccCC
Q psy10682 5 TPAWREPLPGWVDNL 19 (71)
Q Consensus 5 ~~t~~EP~pGWidn~ 19 (71)
.-+.|.+.|+|+|++
T Consensus 259 v~a~k~~~~~~~~~~ 273 (298)
T 3fpf_A 259 VLVFKCPDKGELNSK 273 (298)
T ss_dssp EEEEECC--------
T ss_pred EEEEccCCchHHHHH
Confidence 334999999999975
No 2
>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor, lysozyme/inhibitor complex, IVY, type-C lysozyme inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa} SCOP: d.233.1.1
Probab=30.97 E-value=14 Score=23.69 Aligned_cols=15 Identities=33% Similarity=0.975 Sum_probs=12.7
Q ss_pred CCccccccCCCccce
Q psy10682 10 EPLPGWVDNLNGPTG 24 (71)
Q Consensus 10 EP~pGWidn~~g~~g 24 (71)
+++|+|+.+.+|+++
T Consensus 27 ~~LP~WV~~~~Gtss 41 (137)
T 1uuz_A 27 SDVPKWVSDASGPSS 41 (137)
T ss_dssp CSCCHHHHTTCSCBC
T ss_pred CCCcHHHHhCCCCCC
Confidence 599999999887665
No 3
>1xs0_A Inhibitor of vertebrate lysozyme; alpha beta fold, dimer, hydrolase inhibitor; 1.58A {Escherichia coli} SCOP: d.233.1.1 PDB: 1gpq_A
Probab=23.58 E-value=16 Score=23.35 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=12.9
Q ss_pred cCCccccccCCCcccee
Q psy10682 9 REPLPGWVDNLNGPTGI 25 (71)
Q Consensus 9 ~EP~pGWidn~~g~~gl 25 (71)
+|++|.|+.+. |+.+=
T Consensus 25 ~~~LP~Wv~~~-GtssP 40 (136)
T 1xs0_A 25 GHKLPAWVMKG-GTYTP 40 (136)
T ss_dssp TSCCCHHHHHT-CEEEE
T ss_pred cCCCcHHHHcC-CCCCC
Confidence 47999999987 77664
No 4
>1jmx_G Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.137.9.1 PDB: 1jmz_G*
Probab=23.43 E-value=25 Score=20.58 Aligned_cols=15 Identities=40% Similarity=0.946 Sum_probs=11.0
Q ss_pred cccc-ccCCCccceee
Q psy10682 12 LPGW-VDNLNGPTGIL 26 (71)
Q Consensus 12 ~pGW-idn~~g~~gl~ 26 (71)
=||| +|.+.|..+|+
T Consensus 12 dPGWEvDafGgvasLC 27 (79)
T 1jmx_G 12 DPGWEVDAFGGVSSLC 27 (79)
T ss_dssp SSCSSSCTTSSSSSSC
T ss_pred CCCceecCCccHhhcc
Confidence 4799 67777777765
No 5
>1pby_C Quinohemoprotein amine dehydrogenase 9 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.137.9.1 PDB: 1jju_C*
Probab=23.36 E-value=25 Score=20.58 Aligned_cols=15 Identities=33% Similarity=0.811 Sum_probs=10.9
Q ss_pred cccc-ccCCCccceee
Q psy10682 12 LPGW-VDNLNGPTGIL 26 (71)
Q Consensus 12 ~pGW-idn~~g~~gl~ 26 (71)
=||| +|.+.|..+|+
T Consensus 12 dPGWEvDafGgvasLC 27 (79)
T 1pby_C 12 DPGWEVDAFGAVSNLC 27 (79)
T ss_dssp SSBSSSBTTSSSTTSC
T ss_pred CCCceecCCccHhhcc
Confidence 4788 67777777665
No 6
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}
Probab=22.60 E-value=58 Score=23.21 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.4
Q ss_pred ccccceehhhHhHHHHHHHHhh
Q psy10682 42 DYHAEVIPVDMAINGLIVIGYK 63 (71)
Q Consensus 42 ~~~~DiVPVD~vvn~iI~aa~~ 63 (71)
+...|.+|||.++.+++.++..
T Consensus 323 ~~~~~~v~vdDvA~ai~~~~~~ 344 (478)
T 4dqv_A 323 RAHFDGLPVTFVAEAIAVLGAR 344 (478)
T ss_dssp CCCCCEEEHHHHHHHHHHHHHT
T ss_pred cceeeeeeHHHHHHHHHHHHhh
Confidence 6788999999999999888764
No 7
>3esm_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.65A {Nocardia farcinica}
Probab=20.56 E-value=30 Score=22.39 Aligned_cols=16 Identities=44% Similarity=1.008 Sum_probs=11.5
Q ss_pred eeeeccCCccccccCC
Q psy10682 4 VTPAWREPLPGWVDNL 19 (71)
Q Consensus 4 V~~t~~EP~pGWidn~ 19 (71)
|.+..-+|.|||.-.+
T Consensus 43 v~~v~~~p~pGWt~~v 58 (152)
T 3esm_A 43 VRSARTEPMPGWTARV 58 (152)
T ss_dssp ESEEEECCCTTEEEEE
T ss_pred ccccceecCCCCEEEE
Confidence 4455679999997644
No 8
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Probab=19.21 E-value=42 Score=22.63 Aligned_cols=32 Identities=9% Similarity=0.025 Sum_probs=24.5
Q ss_pred eceEEEEEeCCccccceehhhHhHHHHHHHHh
Q psy10682 31 KGVIRTMLCNGDYHAEVIPVDMAINGLIVIGY 62 (71)
Q Consensus 31 ~G~lr~~~~~~~~~~DiVPVD~vvn~iI~aa~ 62 (71)
.|-.-.++++.+...|++.||-++++++.++-
T Consensus 259 ~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~ 290 (404)
T 1i24_A 259 VGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIA 290 (404)
T ss_dssp HTCCEEEETTSCCEEEEEEHHHHHHHHHHHHH
T ss_pred cCCeeEEeCCCCceECcEEHHHHHHHHHHHHh
Confidence 34333466787888999999999999887764
No 9
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=18.73 E-value=39 Score=20.69 Aligned_cols=15 Identities=27% Similarity=0.722 Sum_probs=11.3
Q ss_pred eeccCCccccccCCC
Q psy10682 6 PAWREPLPGWVDNLN 20 (71)
Q Consensus 6 ~t~~EP~pGWidn~~ 20 (71)
+-+.||+=||..+--
T Consensus 43 ~r~~nPLMGWtsS~D 57 (108)
T 2lju_A 43 TQYTEPLMNWTGSHD 57 (108)
T ss_dssp SCCCCCCCCCSSSCC
T ss_pred CCccCCCccccCCCC
Confidence 347899999987643
No 10
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=17.95 E-value=41 Score=20.55 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=13.3
Q ss_pred eeccCCccccccCCCccce
Q psy10682 6 PAWREPLPGWVDNLNGPTG 24 (71)
Q Consensus 6 ~t~~EP~pGWidn~~g~~g 24 (71)
+-+.||+=||..+---...
T Consensus 35 ~rw~nPLMGWtsS~D~~~q 53 (106)
T 2jya_A 35 PRKIDPIMGYTSSSDMKQQ 53 (106)
T ss_dssp CSCCCTTTCSCSCCCSEEE
T ss_pred CCccCCCcCcCCCCCcccc
Confidence 4578999999987443333
Done!