RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10682
         (71 letters)



>1uuz_A IVY, inhibitor of vertebrate lysozyme; hydrolase/inhibitor,
          lysozyme/inhibitor complex, IVY, type-C lysozyme
          inhibitor, hydrolase; 1.8A {Pseudomonas aeruginosa}
          SCOP: d.233.1.1
          Length = 137

 Score = 25.5 bits (55), Expect = 1.2
 Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 6/28 (21%)

Query: 3  QVTPAWR------EPLPGWVDNLNGPTG 24
               W         +P WV + +GP+ 
Sbjct: 14 GYKATWHAMFKGESDVPKWVSDASGPSS 41


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 24.6 bits (53), Expect = 2.9
 Identities = 11/46 (23%), Positives = 13/46 (28%), Gaps = 15/46 (32%)

Query: 18   NLNGPTGILVAGAKGVIRTMLCNGDYHAEVIPVDMAINGLIVIGYK 63
            N N      VA            GD  A    +D   N L  I  +
Sbjct: 1845 NYNVENQQYVAA-----------GDLRA----LDTVTNVLNFIKLQ 1875



 Score = 23.9 bits (51), Expect = 7.0
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 26/86 (30%)

Query: 1   MSQVTPAWREPLPGWVDNLNG--PTGILVAGAKGVIRTMLCNGDYHAEVI---PVDMAIN 55
           M  ++   +E +  +V+  N   P G         +   L NG  +  V+   P  +   
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAG-------KQVEISLVNGAKNL-VVSGPPQSLY-- 387

Query: 56  GLIV--------IGY---KIGSSQRK 70
           GL +         G    +I  S+RK
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERK 413


>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein
           structure initiative, midwest center structural
           genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc
           14579} SCOP: d.90.1.1
          Length = 200

 Score = 24.4 bits (53), Expect = 3.2
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 9/74 (12%)

Query: 6   PAWREPLPGWVDNLNG---PTGILVAGAKGVIRTMLCNGDYHAEV------IPVDMAING 56
           P +++  P W    N     T  ++  A+G+  ++                IP + ++ G
Sbjct: 115 PLYKDQFPFWSHQGNAMLQHTVWMLLSAEGIGASLQHYNPIVDAEVKETWNIPAEWSLVG 174

Query: 57  LIVIGYKIGSSQRK 70
            +  G        +
Sbjct: 175 QMPFGEPNEQPAER 188


>3ro8_A Endo-1,4-beta-xylanase; glycosyl hydrolase family 10, GH10,
           (beta/alpha)8 fold, XYLA hydrolase; 1.34A {Paenibacillus
           SP} PDB: 3rdk_A 4e4p_A
          Length = 341

 Score = 23.6 bits (51), Expect = 6.0
 Identities = 5/36 (13%), Positives = 9/36 (25%)

Query: 5   TPAWREPLPGWVDNLNGPTGILVAGAKGVIRTMLCN 40
              W +  P W++         V   +      L  
Sbjct: 82  VLVWHQQSPAWLNTKKDDNNNTVPLGRDEALDNLRT 117


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,157,317
Number of extensions: 56701
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 5
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)