RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10682
         (71 letters)



>d1uuza_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 130

 Score = 24.0 bits (52), Expect = 1.8
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 10 EPLPGWVDNLNGPTG 24
            +P WV + +GP+ 
Sbjct: 27 SDVPKWVSDASGPSS 41


>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 137

 Score = 23.2 bits (50), Expect = 3.4
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 6  PAWREPLPGWVDNLNGPTGILVAGAKGVIRTMLCNGD 42
          P +RE +    D L+     +V  AK V   +   G 
Sbjct: 59 PKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGL 95


>d1usca_ b.45.1.2 (A:) Putative styrene monooxygenase small
          component {Thermus thermophilus [TaxId: 274]}
          Length = 178

 Score = 22.4 bits (47), Expect = 5.8
 Identities = 5/32 (15%), Positives = 11/32 (34%)

Query: 9  REPLPGWVDNLNGPTGILVAGAKGVIRTMLCN 40
          + PLPG+     G   ++    +  +      
Sbjct: 7  QGPLPGFYHYYPGVPAVVGVRVEERVNFCPAV 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 278,260
Number of extensions: 10128
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 4
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)