BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10683
(429 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24368|ISWI_DROME Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila
melanogaster GN=Iswi PE=1 SV=1
Length = 1027
Score = 527 bits (1357), Expect = e-149, Method: Compositional matrix adjust.
Identities = 261/348 (75%), Positives = 295/348 (84%), Gaps = 18/348 (5%)
Query: 81 RFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTPKAKGRPKKSLTKEKKNVDPS 140
RFD+LLKQTEIF+HFMTN SA +P PK GRPKK K+K+ +
Sbjct: 46 RFDFLLKQTEIFTHFMTN--------------SAKSPTKPK--GRPKKIKDKDKEKD-VA 88
Query: 141 DHRHRMTEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGI 200
DHRHR TEQEE +E L ++ K I F+ SP YIK GEMRDYQ+RGLNWMISLYENGI
Sbjct: 89 DHRHRKTEQEE-DEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGI 147
Query: 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAIC 260
NGILADEMGLGKTLQTISLLGY+KH++N AGPHIVIVPKSTL NW+NEFKKWCP+LRA+C
Sbjct: 148 NGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVC 207
Query: 261 LIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSK 320
LIGDQD RN IRDV+MPGEWDVC+TSYEMCIRE+ VFKKFNWRYLVIDEAHRIKNEKSK
Sbjct: 208 LIGDQDTRNTFIRDVLMPGEWDVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSK 267
Query: 321 LSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHS 380
LSEI+REFKT NRLL+TGTPLQNNLHELWALLNFLLPD+F+SS+DFD WFNT +GD +
Sbjct: 268 LSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWFNTNTCLGDDA 327
Query: 381 IIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428
+I RLH+VLKPFLLRRLK+EVEKRLKPKKE+K++VGLSKMQR+WYTKV
Sbjct: 328 LITRLHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYTKV 375
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/58 (86%), Positives = 52/58 (89%)
Query: 19 KTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
K I F+ SP YIK GEMRDYQ+RGLNWMISLYENGINGILADEMGLGKTLQTISLLG
Sbjct: 111 KEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 168
>sp|Q91ZW3|SMCA5_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 5 OS=Mus musculus
GN=Smarca5 PE=1 SV=1
Length = 1051
Score = 522 bits (1345), Expect = e-147, Method: Compositional matrix adjust.
Identities = 242/351 (68%), Positives = 290/351 (82%), Gaps = 11/351 (3%)
Query: 78 KIDRFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTPKAKGRPKKSLTKEKKNV 137
+ +RF+YLLKQTE+F+HF ++ KT PG P+ K K++L +
Sbjct: 87 RANRFEYLLKQTELFAHF-----IQPAAQKTPTSPLKMKPGRPRVKKDEKQNL------L 135
Query: 138 DPSDHRHRMTEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYE 197
D+RHR TEQEEDEELL ++ FE+SP Y+K G++RDYQVRGLNW+ISLYE
Sbjct: 136 SVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYE 195
Query: 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR 257
NGINGILADEMGLGKTLQTISLLGYMKHYRNI GPH+V+VPKSTL NWM+EFKKW PTLR
Sbjct: 196 NGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKKWVPTLR 255
Query: 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNE 317
++CLIGD++ R A +RDV++PGEWDVC+TSYEM I+E+ VFKKFNWRYLVIDEAHRIKNE
Sbjct: 256 SVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNE 315
Query: 318 KSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMG 377
KSKLSEIVREFKTTNRLLLTGTPLQNNLHELW+LLNFLLPD+F+S+DDFDSWF+T +G
Sbjct: 316 KSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLG 375
Query: 378 DHSIIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428
D ++ERLH VL+PFLLRR+K++VEK L PKKE+K+YVGLSKMQREWYT++
Sbjct: 376 DQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRI 426
Score = 118 bits (295), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 63/75 (84%)
Query: 2 TEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILAD 61
TEQEEDEELL ++ FE+SP Y+K G++RDYQVRGLNW+ISLYENGINGILAD
Sbjct: 145 TEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILAD 204
Query: 62 EMGLGKTLQTISLLG 76
EMGLGKTLQTISLLG
Sbjct: 205 EMGLGKTLQTISLLG 219
>sp|O60264|SMCA5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 5 OS=Homo sapiens
GN=SMARCA5 PE=1 SV=1
Length = 1052
Score = 521 bits (1343), Expect = e-147, Method: Compositional matrix adjust.
Identities = 241/351 (68%), Positives = 290/351 (82%), Gaps = 11/351 (3%)
Query: 78 KIDRFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTPKAKGRPKKSLTKEKKNV 137
+ +RF+YLLKQTE+F+HF ++ KT PG P+ K K++L +
Sbjct: 88 RANRFEYLLKQTELFAHF-----IQPAAQKTPTSPLKMKPGRPRIKKDEKQNL------L 136
Query: 138 DPSDHRHRMTEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYE 197
D+RHR TEQEEDEELL ++ FE+SP Y+K G++RDYQVRGLNW+ISLYE
Sbjct: 137 SVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYE 196
Query: 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR 257
NGINGILADEMGLGKTLQTISLLGYMKHYRNI GPH+V+VPKSTL NWM+EFK+W PTLR
Sbjct: 197 NGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLR 256
Query: 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNE 317
++CLIGD++ R A +RDV++PGEWDVC+TSYEM I+E+ VFKKFNWRYLVIDEAHRIKNE
Sbjct: 257 SVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNE 316
Query: 318 KSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMG 377
KSKLSEIVREFKTTNRLLLTGTPLQNNLHELW+LLNFLLPD+F+S+DDFDSWF+T +G
Sbjct: 317 KSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLG 376
Query: 378 DHSIIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428
D ++ERLH VL+PFLLRR+K++VEK L PKKE+K+YVGLSKMQREWYT++
Sbjct: 377 DQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRI 427
Score = 118 bits (296), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 63/75 (84%)
Query: 2 TEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILAD 61
TEQEEDEELL ++ FE+SP Y+K G++RDYQVRGLNW+ISLYENGINGILAD
Sbjct: 146 TEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILAD 205
Query: 62 EMGLGKTLQTISLLG 76
EMGLGKTLQTISLLG
Sbjct: 206 EMGLGKTLQTISLLG 220
>sp|P28370|SMCA1_HUMAN Probable global transcription activator SNF2L1 OS=Homo sapiens
GN=SMARCA1 PE=1 SV=2
Length = 1054
Score = 500 bits (1288), Expect = e-141, Method: Compositional matrix adjust.
Identities = 238/350 (68%), Positives = 290/350 (82%), Gaps = 15/350 (4%)
Query: 81 RFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTP--KAKGRPKKSLTKEKKNVD 138
RF++LLKQTE+F+HF+ P++ +P +P GRP+ +++ +
Sbjct: 94 RFEFLLKQTELFAHFIQ-------------PSAQKSPTSPLNMKLGRPRIKKDEKQSLIS 140
Query: 139 PSDHRHRMTEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYEN 198
D+RHR TEQEEDEELL+ + + FE SP Y+KGG +RDYQ+RGLNW+ISLYEN
Sbjct: 141 AGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYEN 200
Query: 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRA 258
G+NGILADEMGLGKTLQTI+LLGY+KHYRNI GPH+V+VPKSTL NWMNEFK+W P+LR
Sbjct: 201 GVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRV 260
Query: 259 ICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEK 318
IC +GD+DAR A IRD MMPGEWDVC+TSYEM I+E+ VFKKF+WRYLVIDEAHRIKNEK
Sbjct: 261 ICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEK 320
Query: 319 SKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGD 378
SKLSEIVREFK+TNRLLLTGTPLQNNLHELWALLNFLLPD+F+S+DDFDSWF+T+ +GD
Sbjct: 321 SKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGD 380
Query: 379 HSIIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428
++ERLH+VLKPFLLRR+K++VEK L PKKE+K+Y+GLSKMQREWYTK+
Sbjct: 381 QKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKI 430
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 51/55 (92%)
Query: 22 VSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
+ FE SP Y+KGG +RDYQ+RGLNW+ISLYENG+NGILADEMGLGKTLQTI+LLG
Sbjct: 169 IRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG 223
>sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator SNF2L1 OS=Mus musculus
GN=Smarca1 PE=1 SV=1
Length = 1046
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 238/359 (66%), Positives = 290/359 (80%), Gaps = 15/359 (4%)
Query: 72 ISLLGPKIDRFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTP--KAKGRPKKS 129
+ L + RF++LLKQTE+F+HF+ P++ +P +P RP+
Sbjct: 89 MPLKADRAKRFEFLLKQTELFAHFIQ-------------PSAQKSPTSPLNMKLARPRVK 135
Query: 130 LTKEKKNVDPSDHRHRMTEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGL 189
++ + D+RHR TEQEEDEELL+ + V FE SP Y+KGG +RDYQ+RGL
Sbjct: 136 KDDKQSLISVGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGL 195
Query: 190 NWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249
NW+ISLYENG+NGILADEMGLGKTLQTI+LLGY+KHYRNI GPH+V+VPKSTL NWMNEF
Sbjct: 196 NWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEF 255
Query: 250 KKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVID 309
K+W P+LR IC +GD+D R A IRD MMPGEWDVC+TSYEM I+E+ VFKKF+WRYLVID
Sbjct: 256 KRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVID 315
Query: 310 EAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSW 369
EAHRIKNEKSKLSEIVREFK+TNRLLLTGTPLQNNLHELWALLNFLLPD+F+S+DDFDSW
Sbjct: 316 EAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSW 375
Query: 370 FNTEEFMGDHSIIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428
F+T+ +GD ++ERLH+VLKPFLLRR+K++VEK L PKKE+K+Y+GLSKMQREWYTK+
Sbjct: 376 FDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKI 434
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 51/55 (92%)
Query: 22 VSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
V FE SP Y+KGG +RDYQ+RGLNW+ISLYENG+NGILADEMGLGKTLQTI+LLG
Sbjct: 173 VRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLG 227
>sp|P41877|ISW1_CAEEL Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis
elegans GN=isw-1 PE=1 SV=2
Length = 1009
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 226/348 (64%), Positives = 274/348 (78%), Gaps = 16/348 (4%)
Query: 81 RFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTPKAKGRPKKSLTKEKKNVDPS 140
RF+ LL++TE FSH +++ G K A AP K +GRP K KN
Sbjct: 48 RFERLLQKTENFSHCLSS-----GDAKLAT----GAPVDTKKRGRPSK------KNGIDG 92
Query: 141 DHRHRMTEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGI 200
DHRHR TEQEEDEE++A+A + +V F+ SPFYI+ GEMRDYQVRGLNW+ SL N I
Sbjct: 93 DHRHRKTEQEEDEEMVADA-IKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNKI 151
Query: 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAIC 260
NGILADEMGLGKTLQTIS++GYMKHY+N A PH+VIVPKSTL NW NEFKKWCP++ A+
Sbjct: 152 NGILADEMGLGKTLQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKWCPSINAVV 211
Query: 261 LIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSK 320
LIGD+ ARN ++RDV++P ++DVC T+YEM ++ + KK NWRY++IDEAHRIKNEKSK
Sbjct: 212 LIGDEAARNQVLRDVILPQKFDVCCTTYEMMLKVKTQLKKLNWRYIIIDEAHRIKNEKSK 271
Query: 321 LSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHS 380
LSE VRE + NRLL+TGTPLQNNLHELWALLNFLLPDIF+SSDDFDSWF+ + G+
Sbjct: 272 LSETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFSNDAMSGNTD 331
Query: 381 IIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428
+++RLH VL+PFLLRR+KS+VEK L PKKE+KVYVGLSKMQREWYTKV
Sbjct: 332 LVQRLHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKV 379
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 63/75 (84%), Gaps = 1/75 (1%)
Query: 2 TEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILAD 61
TEQEEDEE++A+A + +V F+ SPFYI+ GEMRDYQVRGLNW+ SL N INGILAD
Sbjct: 99 TEQEEDEEMVADA-IKSDDLVIFDKSPFYIENGEMRDYQVRGLNWLASLQHNKINGILAD 157
Query: 62 EMGLGKTLQTISLLG 76
EMGLGKTLQTIS++G
Sbjct: 158 EMGLGKTLQTISMIG 172
>sp|P38144|ISW1_YEAST ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW1 PE=1
SV=2
Length = 1129
Score = 358 bits (919), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 176/351 (50%), Positives = 239/351 (68%), Gaps = 17/351 (4%)
Query: 81 RFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTPKAKGRPKKSLTKEKKNVDPS 140
RF++LL + +F HF+ ++ K PK KG+ K
Sbjct: 108 RFEHLLSLSGLFKHFIESKAAKD--PKFRQVLDVLEENKANGKGKGKHQ----------- 154
Query: 141 DHRHRMTEQEEDEELLANANTEGKTIVSFE--NSPFYIKGGEMRDYQVRGLNWMISLYEN 198
D R R TE EED ELL +++ + F+ SP Y+ G++R YQ++G+NW++SL++N
Sbjct: 155 DVRRRKTEHEEDAELLKEEDSDDDESIEFQFRESPAYV-NGQLRPYQIQGVNWLVSLHKN 213
Query: 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRA 258
I GILADEMGLGKTLQTIS LGY+++ I GP +VI PKSTL NW+ E +W P + A
Sbjct: 214 KIAGILADEMGLGKTLQTISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNA 273
Query: 259 ICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEK 318
L GD++ R +I+ ++ ++DV I SYE+ IRE+ KK NW Y++IDEAHRIKNE+
Sbjct: 274 FILQGDKEERAELIQKKLLGCDFDVVIASYEIIIREKSPLKKINWEYIIIDEAHRIKNEE 333
Query: 319 SKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGD 378
S LS+++REF + NRLL+TGTPLQNNLHELWALLNFLLPDIFS + DFD WF++E D
Sbjct: 334 SMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFSDAQDFDDWFSSESTEED 393
Query: 379 HS-IIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428
I+++LH+VL+PFLLRR+KS+VE L PKKEL +YVG+S MQ++WY K+
Sbjct: 394 QDKIVKQLHTVLQPFLLRRIKSDVETSLLPKKELNLYVGMSSMQKKWYKKI 444
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 57/77 (74%), Gaps = 3/77 (3%)
Query: 2 TEQEEDEELLANANTEGKTIVSFE--NSPFYIKGGEMRDYQVRGLNWMISLYENGINGIL 59
TE EED ELL +++ + F+ SP Y+ G++R YQ++G+NW++SL++N I GIL
Sbjct: 161 TEHEEDAELLKEEDSDDDESIEFQFRESPAYV-NGQLRPYQIQGVNWLVSLHKNKIAGIL 219
Query: 60 ADEMGLGKTLQTISLLG 76
ADEMGLGKTLQTIS LG
Sbjct: 220 ADEMGLGKTLQTISFLG 236
>sp|Q08773|ISW2_YEAST ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW2 PE=1
SV=1
Length = 1120
Score = 354 bits (909), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 183/350 (52%), Positives = 236/350 (67%), Gaps = 15/350 (4%)
Query: 81 RFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTPKAKGRPKKSLTKEKKNVDPS 140
RF YLL T++F HF+ G+K K K L+K V S
Sbjct: 90 RFKYLLGVTDLFRHFI---GIKAKHDKNIQKLL-------KQLDSDANKLSKSHSTVSSS 139
Query: 141 DHRHRMTEQEEDEELLANANTE----GKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLY 196
HR TE+EED EL+A+ E + + SP ++K G++RDYQV+GLNW+ISL+
Sbjct: 140 SRHHRKTEKEEDAELMADEEEEIVDTYQEDIFVSESPSFVKSGKLRDYQVQGLNWLISLH 199
Query: 197 ENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTL 256
EN ++GILADEMGLGKTLQTIS LGY+++ + I GP ++IVPKSTL NW EF KW P +
Sbjct: 200 ENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPNV 259
Query: 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKN 316
+ L GD+D R ++R++++ +DV ITSYEM IRE+ K+ W+Y+VIDEAHRIKN
Sbjct: 260 NVLVLHGDKDTRADIVRNIILEARFDVLITSYEMVIREKNALKRLAWQYIVIDEAHRIKN 319
Query: 317 EKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFM 376
E+S LS+I+R F + NRLL+TGTPLQNNLHELWALLNFLLPDIF S+ FD WF
Sbjct: 320 EQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSELFDEWFEQNNSE 379
Query: 377 GDHSI-IERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
D I I++LHSVL PFLLRR+K++VEK L PK E VYVG++ MQ +WY
Sbjct: 380 QDQEIVIQQLHSVLNPFLLRRVKADVEKSLLPKIETNVYVGMTDMQIQWY 429
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 60/79 (75%), Gaps = 4/79 (5%)
Query: 2 TEQEEDEELLANANTE----GKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGING 57
TE+EED EL+A+ E + + SP ++K G++RDYQV+GLNW+ISL+EN ++G
Sbjct: 146 TEKEEDAELMADEEEEIVDTYQEDIFVSESPSFVKSGKLRDYQVQGLNWLISLHENKLSG 205
Query: 58 ILADEMGLGKTLQTISLLG 76
ILADEMGLGKTLQTIS LG
Sbjct: 206 ILADEMGLGKTLQTISFLG 224
>sp|Q7G8Y3|ISW2_ORYSJ Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa
subsp. japonica GN=Os01g0367900 PE=2 SV=2
Length = 1107
Score = 351 bits (900), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 174/345 (50%), Positives = 238/345 (68%), Gaps = 29/345 (8%)
Query: 81 RFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTPKAKGRPKKSLTKEKKNVDPS 140
R YLL+QTEIF+HF A + + P+ +GR +T+E+++ +
Sbjct: 160 RLKYLLQQTEIFAHF--------------AKGNQSKEKKPRGRGRHASKMTEEEEDEEYL 205
Query: 141 DHRHRMTEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGI 200
A A + G ++S P IK G+MRDYQ+ GLNW+I LYENGI
Sbjct: 206 KEEED-----------ALAGSGGTRLLS---QPSCIK-GKMRDYQLAGLNWLIRLYENGI 250
Query: 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAIC 260
NGILADEMGLGKTLQTISLLGY+ +R I GPH+V+ PKSTL NW+ E +++CP LRA+
Sbjct: 251 NGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWIKEIQRFCPILRAVK 310
Query: 261 LIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSK 320
+G+ + RN + +++ PG++DVC+TS+EM I+E+ K+F+WRY++IDEAHRIKNE S
Sbjct: 311 FLGNPEERNHIRENLLQPGKFDVCVTSFEMAIKEKTTLKRFSWRYIIIDEAHRIKNENSL 370
Query: 321 LSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHS 380
LS+ +R + T RLL+TGTPLQNNLHELW+LLNFLLP+IFSS++ FD WF
Sbjct: 371 LSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQE 430
Query: 381 IIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
++++LH VL+PFLLRRLKS+VEK L PKKE + VG+S+MQ+++Y
Sbjct: 431 VVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYY 475
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 51/65 (78%), Gaps = 4/65 (6%)
Query: 12 ANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQT 71
A A + G ++S P IKG +MRDYQ+ GLNW+I LYENGINGILADEMGLGKTLQT
Sbjct: 211 ALAGSGGTRLLS---QPSCIKG-KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT 266
Query: 72 ISLLG 76
ISLLG
Sbjct: 267 ISLLG 271
>sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis
thaliana GN=At3g06400 PE=2 SV=3
Length = 1055
Score = 350 bits (898), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 175/345 (50%), Positives = 240/345 (69%), Gaps = 28/345 (8%)
Query: 81 RFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTPKAKGRPKKSLTKEKKNVDPS 140
R YLL+QTE+F+HF + G +++ K +GR +T+E+++
Sbjct: 117 RLKYLLQQTELFAHFAKSDG-------------SSSQKKAKGRGRHASKITEEEEDE--- 160
Query: 141 DHRHRMTEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGI 200
+EE++ L + NT T P I+G +MRDYQ+ GLNW+I LYENGI
Sbjct: 161 -----EYLKEEEDGLTGSGNTRLLT------QPSCIQG-KMRDYQLAGLNWLIRLYENGI 208
Query: 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAIC 260
NGILADEMGLGKTLQTISLL Y+ YR I GPH+V+ PKSTL NWMNE +++CP LRA+
Sbjct: 209 NGILADEMGLGKTLQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPVLRAVK 268
Query: 261 LIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSK 320
+G+ + R + D+++ G++D+C+TS+EM I+E+ ++F+WRY++IDEAHRIKNE S
Sbjct: 269 FLGNPEERRHIREDLLVAGKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSL 328
Query: 321 LSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHS 380
LS+ +R F T RLL+TGTPLQNNLHELWALLNFLLP+IFSS++ FD WF
Sbjct: 329 LSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQE 388
Query: 381 IIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
++++LH VL+PFLLRRLKS+VEK L PKKE + VG+S+MQ+++Y
Sbjct: 389 VVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYY 433
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
G+MRDYQ+ GLNW+I LYENGINGILADEMGLGKTLQTISLL
Sbjct: 187 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLA 229
>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1
Length = 1703
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 138/272 (50%), Positives = 181/272 (66%), Gaps = 20/272 (7%)
Query: 173 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGP 232
P + GG ++DYQ++GL WM+SL+ N +NGILADEMGLGKT+QTISLL Y+ +NI GP
Sbjct: 759 PSILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGP 818
Query: 233 HIVIVPKSTLLNWMNEFKKWCPTLRAICLIG---DQDARNAMIRDVMMPGEWDVCITSYE 289
++VIVP STL NW +EF KW PTLR I G ++ A+ A IR GE+DV +T++E
Sbjct: 819 YLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIR----AGEFDVVLTTFE 874
Query: 290 MCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLS-EIVREFKTTNRLLLTGTPLQNNLHEL 348
I+ER + K W +++IDE HR+KN +SKLS + + RL+LTGTPLQNNL EL
Sbjct: 875 YIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPEL 934
Query: 349 WALLNFLLPDIFSSSDDFDSWFNTE----------EFMGDHS--IIERLHSVLKPFLLRR 396
WALLNF+LP IF+S FD WFNT E + + +I RLH VL+PFLLRR
Sbjct: 935 WALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVLRPFLLRR 994
Query: 397 LKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428
LK +VEK L K E V +S +Q+ Y ++
Sbjct: 995 LKKDVEKELPDKVEKVVKCKMSALQQIMYQQM 1026
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 41/48 (85%)
Query: 28 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75
P + GG ++DYQ++GL WM+SL+ N +NGILADEMGLGKT+QTISLL
Sbjct: 759 PSILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLL 806
>sp|Q9NEL2|SSL1_CAEEL Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4
Length = 2395
Score = 262 bits (669), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 132/262 (50%), Positives = 174/262 (66%), Gaps = 12/262 (4%)
Query: 173 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGP 232
PF I+G ++R+YQ+ GL+WM++LYE +NGILADEMGLGKT+QTISLL +M +I GP
Sbjct: 551 PFLIRG-QLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGP 609
Query: 233 HIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI 292
H+++VP S +LNW EFKKWCP L+ + G R + M P + VCITSY+
Sbjct: 610 HLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRKGWMKPNCFHVCITSYKTVT 669
Query: 293 RERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 352
++ FK+ W+YL++DEA IKN KS+ + + + RLLLTGTPLQN+L ELW+L+
Sbjct: 670 QDIRAFKQRAWQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLM 729
Query: 353 NFLLPDIFSSSDDFDSWFNTE---------EFMGDHSIIERLHSVLKPFLLRRLKSEVEK 403
+FL+P IFSS DDF WF+ EF + +I RLH VL+PF+LRRLK EVEK
Sbjct: 730 HFLMPTIFSSHDDFKDWFSNPLTGMMEGNMEF--NAPLIGRLHKVLRPFILRRLKKEVEK 787
Query: 404 RLKPKKELKVYVGLSKMQREWY 425
+L K E V LSK QR Y
Sbjct: 788 QLPEKTEHIVNCSLSKRQRYLY 809
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%), Gaps = 1/49 (2%)
Query: 28 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
PF I+G ++R+YQ+ GL+WM++LYE +NGILADEMGLGKT+QTISLL
Sbjct: 551 PFLIRG-QLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLA 598
>sp|Q9XFH4|DDM1_ARATH ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1
PE=1 SV=1
Length = 764
Score = 259 bits (662), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 223/361 (61%), Gaps = 20/361 (5%)
Query: 81 RFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTPKAKGRPKKSLTKEKKNVDPS 140
+ D LL QT+++S F+ + + + A P +GR +K+ ++
Sbjct: 102 KLDELLTQTQLYSEFLLEKMEDITINGIESESQKAEP-EKTGRGRKRKAASQYNNTKAKR 160
Query: 141 DHRHRMTEQEEDEELLANANTEGKTIVSFEN--SPFYIKGGEMRDYQVRGLNWMISLYEN 198
++ +ED E + + TE +T++ +N P + GG+++ YQ++G+ W+ISL++N
Sbjct: 161 AVAAMISRSKEDGETINSDLTEEETVIKLQNELCPL-LTGGQLKSYQLKGVKWLISLWQN 219
Query: 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRA 258
G+NGILAD+MGLGKT+QTI L ++K + GP++VI P STL NW NE ++ P++ A
Sbjct: 220 GLNGILADQMGLGKTIQTIGFLSHLKG-NGLDGPYLVIAPLSTLSNWFNEIARFTPSINA 278
Query: 259 ICLIGDQDARNAMIRDVM---MPGEWDVCITSYEMCIRE-RGVFKKFNWRYLVIDEAHRI 314
I GD++ R+ + R M + ++ + ITSYE+ + + + + + + W+Y+VIDE HR+
Sbjct: 279 IIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKRILRHYPWKYVVIDEGHRL 338
Query: 315 KNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFN--- 371
KN K KL ++ K N+LLLTGTPLQNNL ELW+LLNF+LPDIF+S D+F+SWF+
Sbjct: 339 KNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFSE 398
Query: 372 --------TEEFMGDHSIIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQRE 423
EE ++ +LH +L+PF+LRR+K +VE L KKE+ +Y ++ Q++
Sbjct: 399 KNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMKCDVELSLPRKKEIIMYATMTDHQKK 458
Query: 424 W 424
+
Sbjct: 459 F 459
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 57/78 (73%), Gaps = 3/78 (3%)
Query: 1 MTEQEEDEELLANANTEGKTIVSFEN--SPFYIKGGEMRDYQVRGLNWMISLYENGINGI 58
++ +ED E + + TE +T++ +N P + GG+++ YQ++G+ W+ISL++NG+NGI
Sbjct: 166 ISRSKEDGETINSDLTEEETVIKLQNELCPL-LTGGQLKSYQLKGVKWLISLWQNGLNGI 224
Query: 59 LADEMGLGKTLQTISLLG 76
LAD+MGLGKT+QTI L
Sbjct: 225 LADQMGLGKTIQTIGFLS 242
>sp|P32597|STH1_YEAST Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=STH1 PE=1 SV=1
Length = 1359
Score = 257 bits (656), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 128/263 (48%), Positives = 173/263 (65%), Gaps = 14/263 (5%)
Query: 169 FENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRN 228
+ P + GG +++YQ+RGL WM+SLY N +NGILADEMGLGKT+Q+ISL+ Y+ +
Sbjct: 458 IDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKK 517
Query: 229 IAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSY 288
GP +VIVP ST+ NW EF+KW P+L I G + R+++ + + G +DV +T+Y
Sbjct: 518 DIGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRV-GNFDVLLTTY 576
Query: 289 EMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLS-EIVREFKTTNRLLLTGTPLQNNLHE 347
E I+++ + K +W +++IDE HR+KN +SKLS I ++T NRL+LTGTPLQNNL E
Sbjct: 577 EYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPE 636
Query: 348 LWALLNFLLPDIFSSSDDFDSWFNT------------EEFMGDHSIIERLHSVLKPFLLR 395
LWALLNF+LP IF+S+ F+ WFNT II RLH VL+PFLLR
Sbjct: 637 LWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHKVLRPFLLR 696
Query: 396 RLKSEVEKRLKPKKELKVYVGLS 418
RLK EVEK L K E + LS
Sbjct: 697 RLKKEVEKDLPDKVEKVIKCKLS 719
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 42/52 (80%)
Query: 24 FENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75
+ P + GG +++YQ+RGL WM+SLY N +NGILADEMGLGKT+Q+ISL+
Sbjct: 458 IDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLI 509
>sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1
Length = 1606
Score = 251 bits (641), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 121/258 (46%), Positives = 166/258 (64%), Gaps = 12/258 (4%)
Query: 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238
G ++ YQ++GL W++SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ I GP ++IVP
Sbjct: 744 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 803
Query: 239 KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF 298
STL NW EF KW P++ + G AR A + + G+++V +T+YE I+++ +
Sbjct: 804 LSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ-LRSGKFNVLLTTYEYIIKDKHIL 862
Query: 299 KKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWALLNFLLP 357
K W+Y+++DE HR+KN KL++++ + RLLLTGTPLQN L ELWALLNFLLP
Sbjct: 863 AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLP 922
Query: 358 DIFSSSDDFDSWFNTEEFMGDHS----------IIERLHSVLKPFLLRRLKSEVEKRLKP 407
IF S F+ WFN M II RLH VL+PFLLRRLK EVE +L
Sbjct: 923 TIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPE 982
Query: 408 KKELKVYVGLSKMQREWY 425
K E + +S +QR Y
Sbjct: 983 KVEYVIKCDMSALQRVLY 1000
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 7/63 (11%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKIDRFDYLLKQTEIFS 93
G ++ YQ++GL W++SLY N +NGILADEMGLGKT+QTI+L+ YL++ I
Sbjct: 744 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI-------TYLMEHKRING 796
Query: 94 HFM 96
F+
Sbjct: 797 PFL 799
>sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2
Length = 1647
Score = 251 bits (641), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 121/258 (46%), Positives = 166/258 (64%), Gaps = 12/258 (4%)
Query: 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238
G ++ YQ++GL W++SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ I GP ++IVP
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 239 KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF 298
STL NW EF KW P++ + G AR A + + G+++V +T+YE I+++ +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ-LRSGKFNVLLTTYEYIIKDKHIL 870
Query: 299 KKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWALLNFLLP 357
K W+Y+++DE HR+KN KL++++ + RLLLTGTPLQN L ELWALLNFLLP
Sbjct: 871 AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLP 930
Query: 358 DIFSSSDDFDSWFNTEEFMGDHS----------IIERLHSVLKPFLLRRLKSEVEKRLKP 407
IF S F+ WFN M II RLH VL+PFLLRRLK EVE +L
Sbjct: 931 TIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPE 990
Query: 408 KKELKVYVGLSKMQREWY 425
K E + +S +QR Y
Sbjct: 991 KVEYVIKCDMSALQRVLY 1008
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 7/63 (11%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKIDRFDYLLKQTEIFS 93
G ++ YQ++GL W++SLY N +NGILADEMGLGKT+QTI+L+ YL++ I
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI-------TYLMEHKRING 804
Query: 94 HFM 96
F+
Sbjct: 805 PFL 807
>sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1
Length = 1613
Score = 251 bits (641), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 121/258 (46%), Positives = 166/258 (64%), Gaps = 12/258 (4%)
Query: 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238
G ++ YQ++GL W++SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ I GP ++IVP
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 239 KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF 298
STL NW EF KW P++ + G AR A + + G+++V +T+YE I+++ +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ-LRSGKFNVLLTTYEYIIKDKHIL 870
Query: 299 KKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWALLNFLLP 357
K W+Y+++DE HR+KN KL++++ + RLLLTGTPLQN L ELWALLNFLLP
Sbjct: 871 AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLP 930
Query: 358 DIFSSSDDFDSWFNTEEFMGDHS----------IIERLHSVLKPFLLRRLKSEVEKRLKP 407
IF S F+ WFN M II RLH VL+PFLLRRLK EVE +L
Sbjct: 931 TIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPE 990
Query: 408 KKELKVYVGLSKMQREWY 425
K E + +S +QR Y
Sbjct: 991 KVEYVIKCDMSALQRVLY 1008
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 7/63 (11%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKIDRFDYLLKQTEIFS 93
G ++ YQ++GL W++SLY N +NGILADEMGLGKT+QTI+L+ YL++ I
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI-------TYLMEHKRING 804
Query: 94 HFM 96
F+
Sbjct: 805 PFL 807
>sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1
SV=1
Length = 1613
Score = 251 bits (640), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 121/258 (46%), Positives = 166/258 (64%), Gaps = 12/258 (4%)
Query: 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238
G ++ YQ++GL W++SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ I GP ++IVP
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
Query: 239 KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF 298
STL NW EF KW P++ + G AR A + + G+++V +T+YE I+++ +
Sbjct: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ-LRSGKFNVLLTTYEYIIKDKHIL 870
Query: 299 KKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWALLNFLLP 357
K W+Y+++DE HR+KN KL++++ + RLLLTGTPLQN L ELWALLNFLLP
Sbjct: 871 AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLP 930
Query: 358 DIFSSSDDFDSWFNTEEFMGDHS----------IIERLHSVLKPFLLRRLKSEVEKRLKP 407
IF S F+ WFN M II RLH VL+PFLLRRLK EVE +L
Sbjct: 931 TIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPE 990
Query: 408 KKELKVYVGLSKMQREWY 425
K E + +S +QR Y
Sbjct: 991 KVEYVIKCDMSALQRVLY 1008
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 7/63 (11%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKIDRFDYLLKQTEIFS 93
G ++ YQ++GL W++SLY N +NGILADEMGLGKT+QTI+L+ YL++ I
Sbjct: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI-------TYLMEHKRING 804
Query: 94 HFM 96
F+
Sbjct: 805 PFL 807
>sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=3
Length = 3230
Score = 249 bits (636), Expect = 3e-65, Method: Composition-based stats.
Identities = 121/276 (43%), Positives = 181/276 (65%), Gaps = 17/276 (6%)
Query: 159 ANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS 218
A T+ KT + P ++G ++R+YQ GL+W++++YE +NGILADEMGLGKT+QTIS
Sbjct: 602 ATTQVKTPI-----PLLLRG-QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTIS 655
Query: 219 LLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMP 278
LL ++ + GPH++IVP S +LNW E K+WCP+ + + G Q R + P
Sbjct: 656 LLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKP 715
Query: 279 GEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTG 338
+ VCITSY++ +++ F++ NWRYL++DEA IKN KS+ + + F + RLLLTG
Sbjct: 716 NAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTG 775
Query: 339 TPLQNNLHELWALLNFLLPDIFSSSDDFDSWFN---------TEEFMGDHSIIERLHSVL 389
TPLQN+L ELW+L++FL+P +F S +F WF+ ++E+ + +++RLH VL
Sbjct: 776 TPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEY--NEGLVKRLHKVL 833
Query: 390 KPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
+PFLLRR+K +VEK++ K E + LSK QR Y
Sbjct: 834 RPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLY 869
Score = 68.2 bits (165), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 6/63 (9%)
Query: 14 ANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS 73
A T+ KT + P ++G ++R+YQ GL+W++++YE +NGILADEMGLGKT+QTIS
Sbjct: 602 ATTQVKTPI-----PLLLRG-QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTIS 655
Query: 74 LLG 76
LL
Sbjct: 656 LLA 658
>sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf22 PE=1 SV=2
Length = 1680
Score = 248 bits (634), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 142/369 (38%), Positives = 211/369 (57%), Gaps = 48/369 (13%)
Query: 78 KIDRFDYLLKQTEIFSHFMT-----NQGVKGGGPKTAAPASAAAPGTPKAKGRPKKSLTK 132
K R +LLKQT+ + +T Q G + +++A P +++
Sbjct: 790 KDTRITHLLKQTDQYLENLTRAVRIQQSNIHSGNTSGKGSNSAELEAP---------ISE 840
Query: 133 EKKNVDPSDHRHRMTEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWM 192
E KN+D HR+ E+ E ++ GG ++DYQ++GL WM
Sbjct: 841 EDKNLDYFKVAHRIHEEVEQPKIFV--------------------GGTLKDYQLKGLEWM 880
Query: 193 ISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKW 252
+SLY N +NGILADEMGLGKT+QTI+ + Y+ +N GP ++IVP STL NW+ EF+KW
Sbjct: 881 LSLYNNNLNGILADEMGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKW 940
Query: 253 CPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAH 312
P+++ I G R + + + ++V +T++E I++R + + W +++IDE H
Sbjct: 941 APSVKKIAYKGPPQLRKTL-QSQIRSSNFNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGH 999
Query: 313 RIKNEKSKLSEIVRE-FKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFN 371
RIKN +SKL+ + + + RL+LTGTPLQNNL ELWALLNF+LP IF+S FD WFN
Sbjct: 1000 RIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFN 1059
Query: 372 T-------EEFMGDHS-----IIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSK 419
T ++ +G + II+RLH VL+PFL RRLK +VEK L K E + LS
Sbjct: 1060 TPFANTGGQDKIGLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSG 1119
Query: 420 MQREWYTKV 428
+Q + Y ++
Sbjct: 1120 LQLKLYQQM 1128
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 39/48 (81%)
Query: 28 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75
P GG ++DYQ++GL WM+SLY N +NGILADEMGLGKT+QTI+ +
Sbjct: 861 PKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFI 908
>sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1
SV=2
Length = 1638
Score = 248 bits (634), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 121/258 (46%), Positives = 170/258 (65%), Gaps = 12/258 (4%)
Query: 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238
G +++YQ++GL W++SLY N +NGILADEMGLGKT+QTISL+ Y+ + + GP+++IVP
Sbjct: 771 GTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLIIVP 830
Query: 239 KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF 298
STL NW+ EF+KW P + + G R ++++ M +++V +T+YE I+++ V
Sbjct: 831 LSTLPNWVLEFEKWAPAVGVVSYKGSPQGRR-LLQNQMRATKFNVLLTTYEYVIKDKAVL 889
Query: 299 KKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWALLNFLLP 357
K W+Y++IDE HR+KN KL++++ + RLLLTGTPLQN L ELWALLNFLLP
Sbjct: 890 AKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLP 949
Query: 358 DIFSSSDDFDSWFNTE--------EFMGDHS--IIERLHSVLKPFLLRRLKSEVEKRLKP 407
IF S F+ WFN E + + II RLH VL+PFLLRRLK EVE +L
Sbjct: 950 SIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLPD 1009
Query: 408 KKELKVYVGLSKMQREWY 425
K E + +S +QR Y
Sbjct: 1010 KVEYIIKCDMSALQRVLY 1027
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 41/48 (85%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKIDR 81
G +++YQ++GL W++SLY N +NGILADEMGLGKT+QTISL+ +DR
Sbjct: 771 GTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDR 818
>sp|Q4IAK7|SWR1_GIBZE Helicase SWR1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=SWR1 PE=3 SV=1
Length = 1691
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 127/269 (47%), Positives = 172/269 (63%), Gaps = 17/269 (6%)
Query: 173 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGP 232
PF ++G +R+YQ GL+W+ LY N NGILADEMGLGKT+QTI+LL ++ + GP
Sbjct: 804 PFLLRGT-LREYQRDGLDWLAGLYANSTNGILADEMGLGKTIQTIALLAHLACTHEVWGP 862
Query: 233 HIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI 292
H+VIVP S +LNW EFKKWCP + + G Q+ R + W+VCITSY++ +
Sbjct: 863 HLVIVPTSVMLNWEMEFKKWCPGFKILAYYGSQEERKRKRQGWNNDDIWNVCITSYQLVL 922
Query: 293 RERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 352
+++ VFK+ W Y+++DEAH IKN KS+ + + F T RLLLTGTPLQNNL ELW+LL
Sbjct: 923 QDQQVFKRRRWHYMILDEAHNIKNFKSQRWQTLLGFNTQARLLLTGTPLQNNLTELWSLL 982
Query: 353 NFLLPDI-----FSSSDDFDSWF---------NTEEFMGD--HSIIERLHSVLKPFLLRR 396
FL+P F+ +F WF + E M D +II +LH VL+P+LLRR
Sbjct: 983 FFLMPAENGVGGFADLQEFHDWFAKPESQILESGREQMDDEARAIISKLHKVLRPYLLRR 1042
Query: 397 LKSEVEKRLKPKKELKVYVGLSKMQREWY 425
LK++VEK++ K E + LSK QRE Y
Sbjct: 1043 LKADVEKQMPAKYEHVEFCRLSKRQRELY 1071
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 28 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
PF ++G +R+YQ GL+W+ LY N NGILADEMGLGKT+QTI+LL
Sbjct: 804 PFLLRGT-LREYQRDGLDWLAGLYANSTNGILADEMGLGKTIQTIALLA 851
>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus
GN=Smarca2 PE=1 SV=1
Length = 1577
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 118/258 (45%), Positives = 167/258 (64%), Gaps = 12/258 (4%)
Query: 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238
G ++ YQ++GL WM+SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ + GP+++IVP
Sbjct: 727 GTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVP 786
Query: 239 KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF 298
STL NW EF KW P++ I G R +++ + G+++V +T+YE I+++ +
Sbjct: 787 LSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHIL 845
Query: 299 KKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWALLNFLLP 357
K W+Y+++DE HR+KN KL++++ + R+LLTGTPLQN L ELWALLNFLLP
Sbjct: 846 AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP 905
Query: 358 DIFSSSDDFDSWFNTEEFMGDHS----------IIERLHSVLKPFLLRRLKSEVEKRLKP 407
IF S F+ WFN M II RLH VL+PFLLRRLK EVE +L
Sbjct: 906 TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE 965
Query: 408 KKELKVYVGLSKMQREWY 425
K E + +S +Q+ Y
Sbjct: 966 KVEYVIKCDMSALQKILY 983
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 37/42 (88%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75
G ++ YQ++GL WM+SLY N +NGILADEMGLGKT+QTI+L+
Sbjct: 727 GTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI 768
>sp|Q7S133|SWR1_NEUCR Helicase swr-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=swr-1 PE=3 SV=1
Length = 1845
Score = 246 bits (627), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 126/269 (46%), Positives = 173/269 (64%), Gaps = 17/269 (6%)
Query: 173 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGP 232
PF ++G +R+YQ GL+W+ LY N NGILADEMGLGKT+QTI+LL ++ + + GP
Sbjct: 938 PFLLRGT-LREYQHHGLDWLAGLYANNTNGILADEMGLGKTIQTIALLAHLACHHEVWGP 996
Query: 233 HIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI 292
H+VIVP S +LNW EFKKWCP + + G+Q+ R + W+VCITSY+M +
Sbjct: 997 HLVIVPTSVMLNWEMEFKKWCPGFKILTYYGNQEERKRKRQGWNNDDVWNVCITSYQMVL 1056
Query: 293 RERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 352
+++ VF++ W Y+++DEAH IKN KS+ + + F T RLLLTGTPLQNNL ELW+LL
Sbjct: 1057 QDQQVFRRRRWHYMILDEAHNIKNFKSQRWQTLLGFNTQARLLLTGTPLQNNLTELWSLL 1116
Query: 353 NFLLPDI-----FSSSDDFDSWF---------NTEEFMGD--HSIIERLHSVLKPFLLRR 396
FL P F +F +WF + E + D +II +LH VL+P+LLRR
Sbjct: 1117 YFLAPPENGEGGFVDLTEFHNWFARPESQILESGREQLDDEARAIIAKLHKVLRPYLLRR 1176
Query: 397 LKSEVEKRLKPKKELKVYVGLSKMQREWY 425
LK++VEK++ K E + LSK QRE Y
Sbjct: 1177 LKADVEKQMPAKYEHVEFCRLSKRQRELY 1205
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 28 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
PF ++G +R+YQ GL+W+ LY N NGILADEMGLGKT+QTI+LL
Sbjct: 938 PFLLRGT-LREYQHHGLDWLAGLYANNTNGILADEMGLGKTIQTIALLA 985
>sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens
GN=SMARCA2 PE=1 SV=2
Length = 1590
Score = 246 bits (627), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 118/258 (45%), Positives = 167/258 (64%), Gaps = 12/258 (4%)
Query: 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238
G ++ YQ++GL WM+SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ + GP+++IVP
Sbjct: 722 GTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVP 781
Query: 239 KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF 298
STL NW EF KW P++ I G R +++ + G+++V +T+YE I+++ +
Sbjct: 782 LSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHIL 840
Query: 299 KKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWALLNFLLP 357
K W+Y+++DE HR+KN KL++++ + R+LLTGTPLQN L ELWALLNFLLP
Sbjct: 841 AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP 900
Query: 358 DIFSSSDDFDSWFNTEEFMGDHS----------IIERLHSVLKPFLLRRLKSEVEKRLKP 407
IF S F+ WFN M II RLH VL+PFLLRRLK EVE +L
Sbjct: 901 TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE 960
Query: 408 KKELKVYVGLSKMQREWY 425
K E + +S +Q+ Y
Sbjct: 961 KVEYVIKCDMSALQKILY 978
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 37/42 (88%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75
G ++ YQ++GL WM+SLY N +NGILADEMGLGKT+QTI+L+
Sbjct: 722 GTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALI 763
>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf21 PE=1 SV=1
Length = 1199
Score = 244 bits (624), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 126/270 (46%), Positives = 174/270 (64%), Gaps = 14/270 (5%)
Query: 172 SPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAG 231
P + GG++++YQ+RGL WMISLY N +NGILADEMGLGKT+QTISL+ ++ + G
Sbjct: 408 QPSILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNG 467
Query: 232 PHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMC 291
P +VIVP STL NW EF++W P++ I G R A+ V + V +T+YE
Sbjct: 468 PFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRH-SNFQVLLTTYEYI 526
Query: 292 IRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTN-RLLLTGTPLQNNLHELWA 350
I++R + + W Y++IDE HR+KN +SKL+ + + ++ RL+LTGTPLQNNL ELWA
Sbjct: 527 IKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWA 586
Query: 351 LLNFLLPDIFSSSDDFDSWFNTE----------EFMGDHS--IIERLHSVLKPFLLRRLK 398
LLNF+LP IF+S FD WFNT E + S +I RLH VL+PFLLRRLK
Sbjct: 587 LLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHKVLRPFLLRRLK 646
Query: 399 SEVEKRLKPKKELKVYVGLSKMQREWYTKV 428
+VE L K E + +S +Q++ Y ++
Sbjct: 647 KDVEAELPDKVEKVIRCQMSGLQQKLYYQM 676
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 27 SPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKIDR 81
P + GG++++YQ+RGL WMISLY N +NGILADEMGLGKT+QTISL+ I++
Sbjct: 408 QPSILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEK 462
>sp|Q9NDJ2|DOM_DROME Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2
Length = 3198
Score = 244 bits (623), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 125/280 (44%), Positives = 177/280 (63%), Gaps = 9/280 (3%)
Query: 153 EELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGK 212
E L NT T V PF +K +R+YQ GL+W++++ E +NGILADEMGLGK
Sbjct: 888 ESLQPKGNTLSSTNV-VTPVPFLLKHS-LREYQHIGLDWLVTMNERKLNGILADEMGLGK 945
Query: 213 TLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMI 272
T+QTI+LL ++ + GPH+++VP S +LNW EFKKWCP + + G Q R
Sbjct: 946 TIQTIALLAHLACAKGNWGPHLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKR 1005
Query: 273 RDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTN 332
P + VCITSY++ ++++ F++ W+YL++DEA IKN KS+ +++ F T
Sbjct: 1006 VGWTKPNAFHVCITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTER 1065
Query: 333 RLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFN---TEEFMG----DHSIIERL 385
RLLLTGTPLQN+L ELW+L++FL+P +FSS +F WF+ T G + ++I RL
Sbjct: 1066 RLLLTGTPLQNDLMELWSLMHFLMPYVFSSHREFKEWFSNPMTGMIEGNMEYNETLITRL 1125
Query: 386 HSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
H V++PFLLRRLK EVEK++ K E + LS QR Y
Sbjct: 1126 HKVIRPFLLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLY 1165
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 8 EELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGK 67
E L NT T V PF +K +R+YQ GL+W++++ E +NGILADEMGLGK
Sbjct: 888 ESLQPKGNTLSSTNV-VTPVPFLLKHS-LREYQHIGLDWLVTMNERKLNGILADEMGLGK 945
Query: 68 TLQTISLLG 76
T+QTI+LL
Sbjct: 946 TIQTIALLA 954
>sp|Q9NRZ9|HELLS_HUMAN Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1
Length = 838
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/277 (45%), Positives = 175/277 (63%), Gaps = 16/277 (5%)
Query: 167 VSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHY 226
V F+ P + GG MR YQV G+ W+ L+ENGINGILADEMGLGKT+Q I+ + M
Sbjct: 210 VPFQQ-PKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQ- 267
Query: 227 RNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVM-MPGEWD--- 282
R + GP +V P STL NWM EFK++ P + + G Q+ R ++R++ G
Sbjct: 268 RGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHP 327
Query: 283 VCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 342
V ITS+E+ +R+R + W+YL++DE HRIKN K +L ++ F N+LLLTGTPLQ
Sbjct: 328 VVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQ 387
Query: 343 NNLHELWALLNFLLPDIFSSSDDFDSWFN-------TEEFMG---DHSIIERLHSVLKPF 392
NNL ELW+LLNFLLPD+F F+SWF+ E+ + + +++ LH +L PF
Sbjct: 388 NNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPF 447
Query: 393 LLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKVC 429
LLRRLKS+V + PK+E+ VY LSK Q +YT +
Sbjct: 448 LLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIV 484
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 22 VSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKIDR 81
V F+ P + GG MR YQV G+ W+ L+ENGINGILADEMGLGKT+Q I+ + I R
Sbjct: 210 VPFQQ-PKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQR 268
>sp|Q5ARK3|SWR1_EMENI Helicase swr1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=swr1 PE=3 SV=2
Length = 1698
Score = 243 bits (621), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/266 (45%), Positives = 173/266 (65%), Gaps = 19/266 (7%)
Query: 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238
G +R+YQ GL+W+ LY N INGILADEMGLGKT+QTI+LL ++ + GPH+V+VP
Sbjct: 823 GTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEHGVWGPHLVVVP 882
Query: 239 KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF 298
S +LNW EFKKWCP + + G+Q+ R R M W+V ITSY++ ++++ V
Sbjct: 883 TSVILNWEMEFKKWCPGFKIMTYYGNQEERRQKRRGWMDDNSWNVLITSYQLVLQDQQVL 942
Query: 299 KKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLP- 357
K+ +W Y+++DEAH IKN +S+ + + F+T RLLLTGTPLQNNL ELW+LL FL+P
Sbjct: 943 KRRSWHYMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLLFFLMPT 1002
Query: 358 -------DIFSSSDDFDSWF---------NTEEFMGDHS--IIERLHSVLKPFLLRRLKS 399
+ F+ +F WF + E M D + ++ +LH+VL+P++LRRLK+
Sbjct: 1003 DGDEAGIEGFADLRNFSEWFRRPVEQILEHGRETMDDEAKQVVTKLHTVLRPYILRRLKA 1062
Query: 400 EVEKRLKPKKELKVYVGLSKMQREWY 425
+VEK++ K E VY LSK QR Y
Sbjct: 1063 DVEKQMPGKYEHVVYCRLSKRQRYLY 1088
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
G +R+YQ GL+W+ LY N INGILADEMGLGKT+QTI+LL
Sbjct: 823 GTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLA 865
>sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=SWR1 PE=3 SV=2
Length = 1616
Score = 242 bits (618), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 138/344 (40%), Positives = 185/344 (53%), Gaps = 56/344 (16%)
Query: 117 PGTPKAKGRPKKSLTKEKKNVDPSDHRHRMTEQEEDEELLANANTEGKTIVSFENSPFYI 176
P TPK+ PK M E+E + ++L G + P
Sbjct: 738 PKTPKSSEDPK------------------MDEKENESDVLEEE-VNGSKVRDVPLPPLL- 777
Query: 177 KGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI 236
G +R YQ +GLNW+ SLY NG NGILADEMGLGKT+QTISLL Y+ +I GPH+++
Sbjct: 778 -RGTLRPYQKQGLNWLASLYNNGTNGILADEMGLGKTIQTISLLAYLAAEHHIWGPHLIV 836
Query: 237 VPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG 296
VP S +LNW EFKK+ P + + G R + P + VCITSY++ + +
Sbjct: 837 VPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWNKPNAFHVCITSYQLVVHDHQ 896
Query: 297 VFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLL 356
FK+ WRY+++DEAH IKN +S + F T NRLLLTGTPLQNNL ELW+LL FL+
Sbjct: 897 SFKRRRWRYMILDEAHNIKNFRSARWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFLM 956
Query: 357 P---------DIFSSSDDFDSWF------------------------NTEEFMGDHS--I 381
P D F++ +DF +WF T + M + +
Sbjct: 957 PSSKVNQAMPDGFANLEDFQTWFGRPVDKILEKTSNGTSSDVIDENDKTTQRMDEETRNT 1016
Query: 382 IERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
+ RLH VL+P+LLRRLK +VEK++ K E +Y LSK QR Y
Sbjct: 1017 VSRLHQVLRPYLLRRLKKDVEKQMPGKYEHIIYCRLSKRQRYLY 1060
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 36/43 (83%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
G +R YQ +GLNW+ SLY NG NGILADEMGLGKT+QTISLL
Sbjct: 779 GTLRPYQKQGLNWLASLYNNGTNGILADEMGLGKTIQTISLLA 821
>sp|C0H4W3|HEPF1_PLAF7 Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum
(isolate 3D7) GN=PF08_0048 PE=3 SV=1
Length = 2082
Score = 241 bits (616), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 127/290 (43%), Positives = 182/290 (62%), Gaps = 14/290 (4%)
Query: 144 HRMTEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGI 203
H+ + D+ L N + + T + P IK +RDYQ GL+W++ LY+N INGI
Sbjct: 631 HKNDSDDNDDILTCNMDEKHLTKI-----PPIIKAT-LRDYQHAGLHWLLYLYKNNINGI 684
Query: 204 LADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIG 263
LADEMGLGKTLQ ISLL Y+ +Y NI GPH+VIVP S L+NW E K++CP + + G
Sbjct: 685 LADEMGLGKTLQCISLLSYLAYYFNIWGPHLVIVPTSILINWEIELKRFCPCFKILSYYG 744
Query: 264 DQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSE 323
+Q+ R + +CI+SY +++ VFK+ W+Y+++DEAH IKN +K
Sbjct: 745 NQNERYKKRVGWFNKDSFHICISSYSTVVKDHLVFKRKRWKYIILDEAHNIKNFNTKRWN 804
Query: 324 IVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNT------EEFMG 377
I+ K N LL+TGTPLQN+L ELW+LL+FL+P+IF+S DF WF+ E+
Sbjct: 805 IILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPNIFTSHLDFKEWFSDPLNLAIEKSKI 864
Query: 378 DHS--IIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
HS +I+RLH+V++P++LRRLK VEK + K E + L++ Q+ Y
Sbjct: 865 HHSKELIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILY 914
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 36/46 (78%)
Query: 31 IKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
I +RDYQ GL+W++ LY+N INGILADEMGLGKTLQ ISLL
Sbjct: 657 IIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLS 702
>sp|Q6FK48|SWR1_CANGA Helicase SWR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=SWR1 PE=3 SV=1
Length = 1450
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 177/309 (57%), Gaps = 22/309 (7%)
Query: 138 DPSDHRHRMTEQEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYE 197
D +D H T E +L T V +P ++G +R YQ +GLNW+ SLY
Sbjct: 586 DSNDGEHDTTSDNEKSDLFPADTTNDPLAVQDVPTPSLLRGT-LRTYQKQGLNWLASLYN 644
Query: 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR 257
N NGILADEMGLGKT+QTISLL Y+ ++ GPH+++VP S LLNW EFK++ P +
Sbjct: 645 NNTNGILADEMGLGKTIQTISLLSYLACEKHNWGPHLIVVPTSVLLNWEMEFKRFAPGFK 704
Query: 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNE 317
+ G+ R + P + VCI SY++ ++++ FK+ W+Y+V+DEAH IKN
Sbjct: 705 VLTYYGNPQQRKEKRKGWNKPDAFHVCIVSYQLIVQDQHSFKRKKWQYMVLDEAHNIKNF 764
Query: 318 KSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDI---------FSSSDDFDS 368
+S + + F T R+LLTGTPLQNN+ ELW+LL FL+P F+ D F
Sbjct: 765 RSTRWQALLNFNTQRRILLTGTPLQNNIAELWSLLYFLMPQTVIDGQKVSGFADLDAFQQ 824
Query: 369 WF------------NTEEFMGDHSIIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVG 416
WF E+ +E+LH VL+P+LLRRLK++VEK++ K E VY
Sbjct: 825 WFGRPVDKLIETGGTYEQDNETKRTVEKLHQVLRPYLLRRLKADVEKQIPGKYEHIVYCK 884
Query: 417 LSKMQREWY 425
LSK QR Y
Sbjct: 885 LSKRQRFLY 893
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
G +R YQ +GLNW+ SLY N NGILADEMGLGKT+QTISLL
Sbjct: 626 GTLRTYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLS 668
>sp|Q4WAS9|SWR1_ASPFU Helicase swr1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=swr1 PE=3 SV=1
Length = 1695
Score = 237 bits (605), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/307 (42%), Positives = 184/307 (59%), Gaps = 37/307 (12%)
Query: 156 LANANTEGKTIVSFE----------NSPF--------YIKGGEMRDYQVRGLNWMISLYE 197
LA +E ++I SFE SP ++ G +R+YQ GL+W+ LY
Sbjct: 787 LATKPSEPESISSFEAPGEKPPQPSESPAPGLKTPIPHLLRGTLREYQHYGLDWLAGLYN 846
Query: 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR 257
N INGILADEMGLGKT+QTI+LL ++ + GPH+V+VP S +LNW EFKKWCP +
Sbjct: 847 NHINGILADEMGLGKTIQTIALLAHLAVEHEVWGPHLVVVPTSVILNWEMEFKKWCPGFK 906
Query: 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNE 317
+ G + R + W+V ITSY++ ++++ V K+ NW Y+V+DEAH IKN
Sbjct: 907 IMTYYGSIEERRQKRKGWTDDTSWNVLITSYQLVLQDQQVLKRRNWHYMVLDEAHNIKNF 966
Query: 318 KSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLP--------DIFSSSDDFDSW 369
+S+ + + F+T RLLLTGTPLQNNL ELW+LL FL+P + F+ +F W
Sbjct: 967 RSQKWQTLLTFRTRARLLLTGTPLQNNLTELWSLLFFLMPSDGDGTGIEGFADLRNFSEW 1026
Query: 370 F---------NTEEFMGDHS--IIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLS 418
F + E M D + ++ +LH++L+P++LRRLK++VEK++ K E VY LS
Sbjct: 1027 FRRPVEQILEHGRETMDDETKRVVTKLHTILRPYILRRLKADVEKQMPAKYEHVVYCRLS 1086
Query: 419 KMQREWY 425
K QR Y
Sbjct: 1087 KRQRFLY 1093
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 18/84 (21%)
Query: 11 LANANTEGKTIVSFE----------NSPF--------YIKGGEMRDYQVRGLNWMISLYE 52
LA +E ++I SFE SP ++ G +R+YQ GL+W+ LY
Sbjct: 787 LATKPSEPESISSFEAPGEKPPQPSESPAPGLKTPIPHLLRGTLREYQHYGLDWLAGLYN 846
Query: 53 NGINGILADEMGLGKTLQTISLLG 76
N INGILADEMGLGKT+QTI+LL
Sbjct: 847 NHINGILADEMGLGKTIQTIALLA 870
>sp|Q0UG82|INO80_PHANO Putative DNA helicase INO80 OS=Phaeosphaeria nodorum (strain SN15 /
ATCC MYA-4574 / FGSC 10173) GN=INO80 PE=3 SV=2
Length = 1673
Score = 236 bits (603), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 211/399 (52%), Gaps = 54/399 (13%)
Query: 81 RFDYLLKQTEIFSHFMTNQG--------VKGGGPKTAAPASAAAPG--TPKAKGRPKKSL 130
+ ++L+ QTE++SHF+ + +APA A PG G P +
Sbjct: 687 KLNFLISQTELYSHFIGKKARTAEIERSTDDAETAASAPAEAEKPGIDVDGMDGNPTAKV 746
Query: 131 TK-EKKNVDPSDHRHRMTE---------QEEDEELLANANTEGKTI---VSFENSPFYIK 177
T E + D D QE + A N EG+ ++F+N P ++
Sbjct: 747 TNFEDLDFDNDDESALNAAAMANAQHAIQEAQDRARAFNNPEGQEDDGELNFQN-PSGLQ 805
Query: 178 GGE------------MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKH 225
E +++YQ++GLNW+++LYE GINGILADEMGLGKT+Q+IS++ Y+
Sbjct: 806 NKEDWIPQPKLLNCTLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAE 865
Query: 226 YRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIR-------DVMMP 278
NI GP +VI P STL NW E K+ P L I G R + +
Sbjct: 866 RYNIWGPFLVIAPASTLHNWQQEIAKFVPDLNVIPYWGTAKDRKVLRKLWDRKHVTYTRD 925
Query: 279 GEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTG 338
+ V ++SY++ +++ F+K W+Y+++DEA IK+ S + + F + NRLLLTG
Sbjct: 926 SPFHVVVSSYQLVVQDAQYFQKMRWQYMILDEAQAIKSSNSSRWKSLLNFHSRNRLLLTG 985
Query: 339 TPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHS---------IIERLHSVL 389
TP+QNN+ ELWALL+F++P +F S D+F WF+ + + H+ + RLH +L
Sbjct: 986 TPIQNNMQELWALLHFIMPSLFDSHDEFSEWFSKD--IESHAQSNTKLNEDQLRRLHMIL 1043
Query: 390 KPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428
KPF+LRR+K V+K L K EL VY L+ QR +Y +
Sbjct: 1044 KPFMLRRVKKHVQKELGDKIELDVYCDLTYRQRAYYANL 1082
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 43/48 (89%)
Query: 36 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKIDRFD 83
+++YQ++GLNW+++LYE GINGILADEMGLGKT+Q+IS++ +R++
Sbjct: 821 LKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAERYN 868
>sp|Q59U81|SWR1_CANAL Helicase SWR1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=SWR1 PE=3 SV=1
Length = 1641
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 125/281 (44%), Positives = 164/281 (58%), Gaps = 34/281 (12%)
Query: 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238
G +R YQ +GLNW+ SLY N NGILADEMGLGKT+QTISLL Y+ + GPH++IVP
Sbjct: 821 GTLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWGPHLIIVP 880
Query: 239 KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF 298
S +LNW EFKK+ P + + G R + P + VCITSY++ ++++ F
Sbjct: 881 TSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQLVVQDQQSF 940
Query: 299 KKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPD 358
K+ W Y+++DEAH IKN +S + F T NRLLLTGTPLQNNL ELW+LL FL+P
Sbjct: 941 KRRRWTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFLMPS 1000
Query: 359 I---------FSSSDDFDSWF-----------------------NTEEFMGDHS--IIER 384
F++ DDF WF T + M + + + R
Sbjct: 1001 SKVNQAMPEGFANLDDFQQWFGKPVNRILEQTSAGNSDLIDENERTTQKMDEETRNTVAR 1060
Query: 385 LHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
LH VL+P+LLRRLK +VEK++ K E VY LSK QR Y
Sbjct: 1061 LHQVLRPYLLRRLKKDVEKQMPGKYEHIVYCRLSKRQRFLY 1101
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
G +R YQ +GLNW+ SLY N NGILADEMGLGKT+QTISLL
Sbjct: 821 GTLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLA 863
>sp|Q60848|HELLS_MOUSE Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2
Length = 821
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/274 (43%), Positives = 171/274 (62%), Gaps = 23/274 (8%)
Query: 173 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGP 232
P + GG MR YQV G+ W+ L+ENGINGILADEMGLGKT+Q I+ + M R + GP
Sbjct: 198 PKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQ-RGVPGP 256
Query: 233 HIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDV--------MMPGEWDVC 284
+V P STL NWM EFK++ P + + G ++ R +++++ + P V
Sbjct: 257 FLVCGPLSTLPNWMAEFKRFTPEIPTLLYHGTREDRRKLVKNIHKRQGTLQIHP----VV 312
Query: 285 ITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNN 344
+TS+E+ +R++ + W+YL++DE HRIKN K +L ++ F N+LLLTGTPLQNN
Sbjct: 313 VTSFEIAMRDQNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNN 372
Query: 345 LHELWALLNFLLPDIFSSSDDFDSWFN-------TEEFMG---DHSIIERLHSVLKPFLL 394
L ELW+LLNFLLPD+F F+SWF+ E+ + + +++ LH +L PFLL
Sbjct: 373 LSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLL 432
Query: 395 RRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428
RRLKS+V + PK+E+ VY L Q +YT +
Sbjct: 433 RRLKSDVALEVPPKREVVVYAPLCNKQEIFYTAI 466
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 39/54 (72%)
Query: 28 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKIDR 81
P + GG MR YQV G+ W+ L+ENGINGILADEMGLGKT+Q I+ + I R
Sbjct: 198 PKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQR 251
>sp|A4R227|INO80_MAGO7 Putative DNA helicase INO80 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=INO80 PE=3 SV=1
Length = 1944
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/262 (42%), Positives = 167/262 (63%), Gaps = 14/262 (5%)
Query: 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS 240
+++YQ++GLNW+++LYE GINGILADEMGLGKT+Q+IS++ Y+ + +I GP +V+ P S
Sbjct: 1078 LKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEHHDIWGPFLVVAPAS 1137
Query: 241 TLLNWMNEFKKWCPTLRAICLIGDQDARNAMIR-------DVMMPGEWDVCITSYEMCIR 293
TL NW E K++ P L+ + G R + + ++ V ITSY+M +
Sbjct: 1138 TLHNWEQEIKRFVPDLKIVPYWGSASDRKILRKFWDRKHSTYKRDAQFHVAITSYQMVVS 1197
Query: 294 ERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLN 353
+ F+K W+Y+++DEA IK+ +S + + F NRLLLTGTP+QNN+ ELWALL+
Sbjct: 1198 DVAYFQKMKWQYMILDEAQAIKSSQSSRWKCLLSFHCRNRLLLTGTPIQNNMQELWALLH 1257
Query: 354 FLLPDIFSSSDDFDSWF--NTEEFMGDHS-----IIERLHSVLKPFLLRRLKSEVEKRLK 406
F++P +F S ++F WF + E +S ++RLH +LKPF+LRR+K V+K L
Sbjct: 1258 FIMPSLFDSHEEFSDWFSKDIESHAQSNSKLNEDQLKRLHMILKPFMLRRVKKHVQKELG 1317
Query: 407 PKKELKVYVGLSKMQREWYTKV 428
K EL VY L+ QR +Y +
Sbjct: 1318 DKIELDVYCDLTYRQRAYYANL 1339
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 47/61 (77%), Gaps = 7/61 (11%)
Query: 36 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKIDRFDYLLKQTEIFSHF 95
+++YQ++GLNW+++LYE GINGILADEMGLGKT+Q+IS++ YL + +I+ F
Sbjct: 1078 LKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMA-------YLAEHHDIWGPF 1130
Query: 96 M 96
+
Sbjct: 1131 L 1131
>sp|Q8RXS6|INO80_ARATH DNA helicase INO80 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2
Length = 1507
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/396 (33%), Positives = 214/396 (54%), Gaps = 51/396 (12%)
Query: 81 RFDYLLKQTEIFSHFMTNQGVKGGGPKTAAP-------------ASAAAPG--------- 118
R ++L+KQTE++SHFM N+ P A P SAA P
Sbjct: 454 RLNFLIKQTELYSHFMQNK--TDSNPSEALPIGDENPIDEVLPETSAAEPSEVEDPEEAE 511
Query: 119 -TPKAKGRPKKSLTKEKKNVDPSDHRH-RMTEQEEDEELLANANTEGKTIVSFEN----- 171
K + +++K+K+ D D + ++ + E E L + + G + + N
Sbjct: 512 LKEKVLRAAQDAVSKQKQITDAFDTEYMKLRQTSEMEGPLNDISVSGSSNIDLHNPSTMP 571
Query: 172 ------SPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKH 225
+P KG +++YQ++GL W+++ YE G+NGILADEMGLGKT+Q ++ L ++
Sbjct: 572 VTSTVQTPELFKGT-LKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAE 630
Query: 226 YRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDV------MMPG 279
+NI GP +V+ P S L NW +E ++CP L+ + G R + +++
Sbjct: 631 EKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRMYRRDA 690
Query: 280 EWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGT 339
+ + ITSY++ + + F++ W+Y+V+DEA IK+ S + + F NRLLLTGT
Sbjct: 691 GFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGT 750
Query: 340 PLQNNLHELWALLNFLLPDIFSSSDDFDSWF-----NTEEFMG--DHSIIERLHSVLKPF 392
P+QNN+ ELWALL+F++P +F + D F+ WF N E G + + RLH++LKPF
Sbjct: 751 PIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQLNRLHAILKPF 810
Query: 393 LLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428
+LRR+K +V L K E+ V+ LS Q+ +Y +
Sbjct: 811 MLRRVKKDVVSELTTKTEVTVHCKLSSRQQAFYQAI 846
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 15 NTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISL 74
N + S +P KG +++YQ++GL W+++ YE G+NGILADEMGLGKT+Q ++
Sbjct: 566 NPSTMPVTSTVQTPELFKGT-LKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAF 624
Query: 75 LG 76
L
Sbjct: 625 LA 626
>sp|Q6CJ38|SWR1_KLULA Helicase SWR1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SWR1 PE=3
SV=1
Length = 1572
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/268 (44%), Positives = 161/268 (60%), Gaps = 21/268 (7%)
Query: 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238
G +R YQ +GLNW+ SLY N NGILADEMGLGKT+QTISLL Y+ + GPH+++VP
Sbjct: 763 GTLRIYQKQGLNWLASLYNNKTNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVP 822
Query: 239 KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF 298
S LLNW EFK++ P + + G R + P + VCITSY++ + ++ F
Sbjct: 823 TSVLLNWEMEFKRFAPGFKVLTYYGSPQQRREKRKGWNKPDAFHVCITSYQLVVHDQHSF 882
Query: 299 KKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPD 358
K+ W+Y+++DEAH IKN +S + + F T RLLLTGTPLQNNL ELW+LL FL+P
Sbjct: 883 KRKKWQYMILDEAHNIKNFRSTRWQALLNFNTERRLLLTGTPLQNNLAELWSLLYFLMPQ 942
Query: 359 I---------FSSSDDFDSWF------------NTEEFMGDHSIIERLHSVLKPFLLRRL 397
F+ D F WF N E+ + +LH VL+P+LLRRL
Sbjct: 943 TALENGKVSGFADLDAFQQWFGRPVDKIVETGENYEQDEETKKTVSKLHQVLRPYLLRRL 1002
Query: 398 KSEVEKRLKPKKELKVYVGLSKMQREWY 425
K++VEK++ K E +Y LSK QR Y
Sbjct: 1003 KADVEKQMPGKYEHIIYCRLSKRQRFLY 1030
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
G +R YQ +GLNW+ SLY N NGILADEMGLGKT+QTISLL
Sbjct: 763 GTLRIYQKQGLNWLASLYNNKTNGILADEMGLGKTIQTISLLA 805
>sp|Q4P328|SWR1_USTMA Helicase SWR1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SWR1
PE=3 SV=1
Length = 1830
Score = 233 bits (594), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/272 (44%), Positives = 171/272 (62%), Gaps = 20/272 (7%)
Query: 173 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGP 232
PF ++G ++R YQ G W+ SLY NG+NGILADEMGLGKT+QTISLL ++ + + GP
Sbjct: 983 PFLLRG-QLRPYQQIGFEWLCSLYANGVNGILADEMGLGKTIQTISLLAHLACDKGVWGP 1041
Query: 233 HIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI 292
H+V+ P S +LNW EFKK+ P + + G+Q R ++VCITSY++ +
Sbjct: 1042 HLVVAPTSVMLNWEVEFKKFLPGFKILSYYGNQKERKEKRIGWNTENSFNVCITSYQLVL 1101
Query: 293 RERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 352
++ +F++ W YLV+DEAH IKN +S+ + + F + RLLLTGTPLQNNL +LW+L+
Sbjct: 1102 ADQHIFRRKPWVYLVLDEAHHIKNFRSQRWQTLLGFNSQRRLLLTGTPLQNNLMDLWSLM 1161
Query: 353 NFLLPD---------IFSSSDDFDSWFNTE--------EFMGD--HSIIERLHSVLKPFL 393
FL+P+ F++ DF WF+ M D +++++LH+VL+P+L
Sbjct: 1162 YFLMPNGATELPGGGAFANMKDFQDWFSNPLDKAIEGGTSMNDETRAMVQKLHAVLRPYL 1221
Query: 394 LRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
LRRLKSEVEK L K E + LSK QR Y
Sbjct: 1222 LRRLKSEVEKELPSKYEHVITCRLSKRQRFLY 1253
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 28 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
PF ++G ++R YQ G W+ SLY NG+NGILADEMGLGKT+QTISLL
Sbjct: 983 PFLLRG-QLRPYQQIGFEWLCSLYANGVNGILADEMGLGKTIQTISLLA 1030
>sp|Q05471|SWR1_YEAST Helicase SWR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SWR1 PE=1 SV=1
Length = 1514
Score = 233 bits (593), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 121/268 (45%), Positives = 161/268 (60%), Gaps = 21/268 (7%)
Query: 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238
G +R YQ +GLNW+ SLY N NGILADEMGLGKT+QTISLL Y+ + GPH+++VP
Sbjct: 694 GNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKENWGPHLIVVP 753
Query: 239 KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF 298
S LLNW EFK++ P + + G R + P + VCI SY++ ++++ F
Sbjct: 754 TSVLLNWEMEFKRFAPGFKVLTYYGSPQQRKEKRKGWNKPDAFHVCIVSYQLVVQDQHSF 813
Query: 299 KKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPD 358
K+ W+Y+V+DEAH IKN +S + + F T RLLLTGTPLQNNL ELW+LL FL+P
Sbjct: 814 KRKRWQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQ 873
Query: 359 I---------FSSSDDFDSWFNT---------EEFMGDHS---IIERLHSVLKPFLLRRL 397
F+ D F WF + F D + +LH VL+P+LLRRL
Sbjct: 874 TVIDGKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKKTVAKLHQVLRPYLLRRL 933
Query: 398 KSEVEKRLKPKKELKVYVGLSKMQREWY 425
K++VEK++ K E VY LSK QR Y
Sbjct: 934 KADVEKQMPAKYEHIVYCKLSKRQRFLY 961
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 35/43 (81%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
G +R YQ +GLNW+ SLY N NGILADEMGLGKT+QTISLL
Sbjct: 694 GNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLA 736
>sp|P32657|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1
Length = 1468
Score = 233 bits (593), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 168/267 (62%), Gaps = 14/267 (5%)
Query: 173 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGP 232
P +IKGGE+RD+Q+ G+NWM L+ G NGILADEMGLGKT+QT++ + ++ R GP
Sbjct: 368 PPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGP 427
Query: 233 HIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMM----------PGEWD 282
HI++VP ST+ W++ F+KW P L IC +G+Q +R+ IR+ +++
Sbjct: 428 HIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDT-IREYEFYTNPRAKGKKTMKFN 486
Query: 283 VCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 342
V +T+YE +++R W+++ +DEAHR+KN +S L E + FK NR+L+TGTPLQ
Sbjct: 487 VLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQ 546
Query: 343 NNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRRLKSEVE 402
NN+ EL AL+NFL+P F+ + D EE I LH ++PF+LRRLK +VE
Sbjct: 547 NNIKELAALVNFLMPGRFTIDQEIDFENQDEE---QEEYIHDLHRRIQPFILRRLKKDVE 603
Query: 403 KRLKPKKELKVYVGLSKMQREWYTKVC 429
K L K E + V LS +Q E+Y +
Sbjct: 604 KSLPSKTERILRVELSDVQTEYYKNIL 630
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 40/49 (81%)
Query: 28 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
P +IKGGE+RD+Q+ G+NWM L+ G NGILADEMGLGKT+QT++ +
Sbjct: 368 PPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFIS 416
>sp|Q759G7|SWR1_ASHGO Helicase SWR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=SWR1 PE=3 SV=2
Length = 1486
Score = 231 bits (588), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/297 (42%), Positives = 172/297 (57%), Gaps = 26/297 (8%)
Query: 149 QEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEM 208
Q++DE + N E ++V P G +R YQ +GLNW+ SLY N NGILADEM
Sbjct: 645 QDKDE----STNLEKLSVVDVPVPPLL--RGTLRTYQKQGLNWLASLYNNNTNGILADEM 698
Query: 209 GLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDAR 268
GLGKT+QTI+LL Y+ + GPH++IVP S LLNW EFK++ P + + G R
Sbjct: 699 GLGKTIQTIALLAYLACEKENWGPHLIIVPTSVLLNWEMEFKRFAPGFKVLSYYGSPQQR 758
Query: 269 NAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF 328
R + VCITSY++ + ++ FK+ W+Y+++DEAH IKN KS + + F
Sbjct: 759 KEKRRGWNKLDAFHVCITSYQLVVHDQHSFKRKKWQYMILDEAHNIKNFKSTRWQALLNF 818
Query: 329 KTTNRLLLTGTPLQNNLHELWALLNFLLPDI---------FSSSDDFDSWF--------- 370
T RLLLTGTPLQNN+ ELW+LL FL+P F+ D F WF
Sbjct: 819 NTRRRLLLTGTPLQNNIAELWSLLYFLMPQTALENGKISGFADLDAFQQWFGKPVDKIIA 878
Query: 371 --NTEEFMGDHSIIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
++E + +LH VL+P+LLRRLK++VEK++ K E +Y LSK QR Y
Sbjct: 879 ANDSEHDDETRRTVSKLHQVLRPYLLRRLKADVEKQMPAKYEHILYCRLSKRQRFLY 935
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 6/73 (8%)
Query: 4 QEEDEELLANANTEGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEM 63
Q++DE + N E ++V P G +R YQ +GLNW+ SLY N NGILADEM
Sbjct: 645 QDKDE----STNLEKLSVVDVPVPPLL--RGTLRTYQKQGLNWLASLYNNNTNGILADEM 698
Query: 64 GLGKTLQTISLLG 76
GLGKT+QTI+LL
Sbjct: 699 GLGKTIQTIALLA 711
>sp|Q6CA87|SWR1_YARLI Helicase SWR1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SWR1 PE=3 SV=1
Length = 1772
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 165/269 (61%), Gaps = 17/269 (6%)
Query: 173 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGP 232
PF ++G +R YQ GL W+ LY N NGILADEMGLGKT+QTISLL Y+ +I GP
Sbjct: 902 PFLLRGT-LRAYQQLGLEWLAGLYNNDTNGILADEMGLGKTIQTISLLSYLACEHHIWGP 960
Query: 233 HIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI 292
H++IVP S +LNW EFK++ P + + G+ R R W VCITSY++ +
Sbjct: 961 HLIIVPTSVMLNWEMEFKRFAPGFKVMTYYGNPVQRREKRRGWNKEDTWHVCITSYQLVL 1020
Query: 293 RERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 352
++ F++ W Y+++DEAH IKN +S+ + + F T RLLLTGTPLQNNL ELW+LL
Sbjct: 1021 QDLFAFRRKRWHYMILDEAHNIKNFRSQRWQSLLHFNTVRRLLLTGTPLQNNLMELWSLL 1080
Query: 353 NFLLPDI--------FSSSDDFDSWFN------TEEFMGDH--SIIERLHSVLKPFLLRR 396
FL+P F++ DF WF+ E + + + + +LH +L+P+LLRR
Sbjct: 1081 YFLMPSSRNQMDMPGFANLKDFQEWFSRPIDKMVEGGVDEEAKTTVSKLHQILRPYLLRR 1140
Query: 397 LKSEVEKRLKPKKELKVYVGLSKMQREWY 425
LK +VEK++ K E VY LSK QR Y
Sbjct: 1141 LKKDVEKQMPAKYEHVVYCRLSKRQRYLY 1169
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 28 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
PF ++G +R YQ GL W+ LY N NGILADEMGLGKT+QTISLL
Sbjct: 902 PFLLRGT-LRAYQQLGLEWLAGLYNNDTNGILADEMGLGKTIQTISLLS 949
>sp|P0CO18|SWR1_CRYNJ Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 229 bits (585), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 121/273 (44%), Positives = 173/273 (63%), Gaps = 21/273 (7%)
Query: 173 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGP 232
PF ++G +R YQ GL W+ SL+ N +NGILADEMGLGKT+QTI+LLG++ + + G
Sbjct: 386 PFLLRG-TLRPYQQAGLEWLASLWSNNMNGILADEMGLGKTIQTIALLGHLACDKGVWGQ 444
Query: 233 HIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI 292
H++IVP S +LNW EFKK+ P ++ + G+Q R W VCITSY++ +
Sbjct: 445 HLIIVPTSVILNWEMEFKKFLPGMKVLTYYGNQKERKEKRVGWHTENTWQVCITSYQIVL 504
Query: 293 RERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 352
++ +F++ NW Y+++DEAH IKN +S+ + + FK RLLLTGTPLQNNL ELW+LL
Sbjct: 505 ADQHIFRRKNWCYMILDEAHNIKNFRSQRWQTLLGFKAQRRLLLTGTPLQNNLMELWSLL 564
Query: 353 NFLLPD----------IFSSSDDFDSWFN--------TEEFMGDHSI--IERLHSVLKPF 392
FL+P F++ +F WF+ T + M + ++ + +LH++L+PF
Sbjct: 565 YFLMPGGIGADATAVVGFANHKEFMEWFSNPMDKAIETGDAMDEETLETVAKLHTLLRPF 624
Query: 393 LLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
+LRRLKSEVE +L K E VY LSK QR Y
Sbjct: 625 ILRRLKSEVETQLPGKFEHVVYCRLSKRQRFLY 657
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 28 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
PF ++G +R YQ GL W+ SL+ N +NGILADEMGLGKT+QTI+LLG
Sbjct: 386 PFLLRG-TLRPYQQAGLEWLASLWSNNMNGILADEMGLGKTIQTIALLG 433
>sp|P0CO19|SWR1_CRYNB Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 229 bits (585), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 121/273 (44%), Positives = 173/273 (63%), Gaps = 21/273 (7%)
Query: 173 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGP 232
PF ++G +R YQ GL W+ SL+ N +NGILADEMGLGKT+QTI+LLG++ + + G
Sbjct: 386 PFLLRG-TLRPYQQAGLEWLASLWSNNMNGILADEMGLGKTIQTIALLGHLACDKGVWGQ 444
Query: 233 HIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI 292
H++IVP S +LNW EFKK+ P ++ + G+Q R W VCITSY++ +
Sbjct: 445 HLIIVPTSVILNWEMEFKKFLPGMKVLTYYGNQKERKEKRVGWHTENTWQVCITSYQIVL 504
Query: 293 RERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 352
++ +F++ NW Y+++DEAH IKN +S+ + + FK RLLLTGTPLQNNL ELW+LL
Sbjct: 505 ADQHIFRRKNWCYMILDEAHNIKNFRSQRWQTLLGFKAQRRLLLTGTPLQNNLMELWSLL 564
Query: 353 NFLLPD----------IFSSSDDFDSWFN--------TEEFMGDHSI--IERLHSVLKPF 392
FL+P F++ +F WF+ T + M + ++ + +LH++L+PF
Sbjct: 565 YFLMPGGIGADATAVVGFANHKEFMEWFSNPMDKAIETGDAMDEETLETVAKLHTLLRPF 624
Query: 393 LLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
+LRRLKSEVE +L K E VY LSK QR Y
Sbjct: 625 ILRRLKSEVETQLPGKFEHVVYCRLSKRQRFLY 657
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 28 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
PF ++G +R YQ GL W+ SL+ N +NGILADEMGLGKT+QTI+LLG
Sbjct: 386 PFLLRG-TLRPYQQAGLEWLASLWSNNMNGILADEMGLGKTIQTIALLG 433
>sp|Q4IL82|INO80_GIBZE Putative DNA helicase INO80 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=INO80 PE=3 SV=1
Length = 1904
Score = 229 bits (584), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 167/266 (62%), Gaps = 18/266 (6%)
Query: 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238
++++YQ++GLNW+++LYE GINGILADEMGLGKT+Q+IS++ Y+ +I GP +V+ P
Sbjct: 1043 AQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAEKHDIWGPFLVVAP 1102
Query: 239 KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIR-------DVMMPGEWDVCITSYEMC 291
STL NW E K+ P + + G R + + + VC+TSY++
Sbjct: 1103 ASTLHNWQQEIAKFVPEFKILPYWGGASDRKVLRKFWDRKHTTYRKDAPFHVCVTSYQLV 1162
Query: 292 IRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWAL 351
+ + F+K W+Y+++DEA IK+ +S + + F NRLLLTGTP+QNN+ ELWAL
Sbjct: 1163 VSDVAYFQKMRWQYMILDEAQAIKSSQSSRWKALLNFHCRNRLLLTGTPIQNNMQELWAL 1222
Query: 352 LNFLLPDIFSSSDDFDSWFNTEEFMGDHS---------IIERLHSVLKPFLLRRLKSEVE 402
L+F++P +F S D+F WF+ + + H+ ++RLH +LKPF+LRR+K V+
Sbjct: 1223 LHFIMPSLFDSHDEFSEWFSKD--IESHAQSNTKLNEDQLKRLHMILKPFMLRRVKKHVQ 1280
Query: 403 KRLKPKKELKVYVGLSKMQREWYTKV 428
K L K EL ++ L+ QR +Y+ +
Sbjct: 1281 KELGDKIELDIFCDLTYRQRAYYSNL 1306
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 49/63 (77%), Gaps = 7/63 (11%)
Query: 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKIDRFDYLLKQTEIFS 93
++++YQ++GLNW+++LYE GINGILADEMGLGKT+Q+IS++ YL ++ +I+
Sbjct: 1043 AQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMA-------YLAEKHDIWG 1095
Query: 94 HFM 96
F+
Sbjct: 1096 PFL 1098
>sp|Q6BGY8|INO80_DEBHA Putative DNA helicase INO80 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=INO80 PE=3 SV=2
Length = 1364
Score = 229 bits (583), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/401 (34%), Positives = 200/401 (49%), Gaps = 70/401 (17%)
Query: 81 RFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTPKAKGRPKKSLTKEKKNVDPS 140
+ ++L+ QTE++SHF+ G K P A + + N+D
Sbjct: 439 KLNFLITQTELYSHFI--------GKKIKTDEFEGTDSDPNANFKSANHHYDKYSNIDGE 490
Query: 141 DHRHRMTE-QEEDEELLANANTEGKTIV---------SFENSPFY---IKGGEM------ 181
+ EDEE L A I +F+N P G EM
Sbjct: 491 GKDFNSIDFDNEDEESLNKAAAVNAQIALEAAKTKAQAFDNDPLKNPDTNGEEMNFQNPT 550
Query: 182 -----------------RDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMK 224
++YQV+GLNW+ +LYE GINGILADEMGLGKT+Q+IS+L Y+
Sbjct: 551 LLGDINISQPDLLKCTLKEYQVKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYLA 610
Query: 225 HYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWD-- 282
NI GP +V+ P STL NW E ++ P + I G NA R V+ WD
Sbjct: 611 ETHNIWGPFLVVTPASTLHNWQQEISRFVPEFKVIPYWG-----NAKDRKVLRKF-WDRK 664
Query: 283 -----------VCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTT 331
V +TSY++ + + F+K W+Y+++DEA IK+ +S + + F
Sbjct: 665 NFRYGKDAPFHVLVTSYQLVVADAAYFQKMKWQYMILDEAQAIKSSQSSRWKSLLSFSCR 724
Query: 332 NRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIE-------R 384
NRLLLTGTP+QN++ ELWALL+F++P +F S D+F WF+ + S E R
Sbjct: 725 NRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFSDWFSKDIESHAQSNTELNEQQLRR 784
Query: 385 LHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
LH +LKPF+LRR+K V+ L K E+ V+ L+ Q+++Y
Sbjct: 785 LHVILKPFMLRRIKKNVQSELGDKLEIDVFCDLTHRQKKYY 825
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 38/41 (92%)
Query: 36 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
+++YQV+GLNW+ +LYE GINGILADEMGLGKT+Q+IS+L
Sbjct: 567 LKEYQVKGLNWLANLYEQGINGILADEMGLGKTVQSISVLA 607
>sp|Q9US25|HRP1_SCHPO Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=hrp1 PE=1 SV=1
Length = 1373
Score = 228 bits (582), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 118/267 (44%), Positives = 162/267 (60%), Gaps = 11/267 (4%)
Query: 169 FENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRN 228
E P YIKGGE+RD+Q+ G+NWM L+ NGILADEMGLGKT+QT+ L Y+ H
Sbjct: 378 LEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSLK 437
Query: 229 IAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMM-------PGEW 281
GP +++VP ST+ W W P L +IC G+ ++R A IR+ ++
Sbjct: 438 QHGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESR-ANIREYEFYLSTNSRKLKF 496
Query: 282 DVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPL 341
++ +T+YE ++++ W+YL IDEAHR+KN +S L E + +F+T NRLL+TGTPL
Sbjct: 497 NILLTTYEYILKDKQELNNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPL 556
Query: 342 QNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRRLKSEV 401
QNNL EL +L+NFL+P F D+ + E D I L L+PF+LRRLK +V
Sbjct: 557 QNNLKELASLVNFLMPGKFYIRDELNFDQPNAEQERD---IRDLQERLQPFILRRLKKDV 613
Query: 402 EKRLKPKKELKVYVGLSKMQREWYTKV 428
EK L K E + V LS MQ EWY +
Sbjct: 614 EKSLPSKSERILRVELSDMQTEWYKNI 640
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 24 FENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
E P YIKGGE+RD+Q+ G+NWM L+ NGILADEMGLGKT+QT+ L
Sbjct: 378 LEKQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLS 430
>sp|Q6FV37|INO80_CANGA Putative DNA helicase INO80 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=INO80
PE=3 SV=1
Length = 1484
Score = 228 bits (581), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 134/392 (34%), Positives = 209/392 (53%), Gaps = 55/392 (14%)
Query: 81 RFDYLLKQTEIFSHFMTNQGVKGGGPKTAA--------------PASAAAPGTP------ 120
+ ++LL QTE++SHF+ G KT+A + AP
Sbjct: 597 KLNFLLTQTELYSHFI------GRKIKTSALEGNEVAEEDEDNYDLTTTAPNKNDFHAID 650
Query: 121 -----------KAKGRPKKSLTKEKKNVDPSD--HRHRMTEQEEDEELLANANTEGKTIV 167
KA +L + + D HR + + + +DEE + N +
Sbjct: 651 FDNENDEQLKLKAAQNASNALAETRAKAKAFDDAHRQQQSTESDDEEEMNFQNPTSLGEI 710
Query: 168 SFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR 227
+ E +++YQ++GLNW+ +LY+ GINGILADEMGLGKT+Q+IS+L ++ +
Sbjct: 711 TIEQPKML--ACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAEHH 768
Query: 228 NIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAM----IRDVMMPGE--- 280
NI GP +V+ P STL NW+NE K+ P + + G + R + R + E
Sbjct: 769 NIWGPFLVVTPASTLHNWVNEISKFVPQFKILPYWGSANDRKVLRKFWDRKNLRYSEKSP 828
Query: 281 WDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTP 340
+ V ITSY+M + + +K W+Y+++DEA IK+ +S + + F NRLLLTGTP
Sbjct: 829 FHVMITSYQMVVADASYLQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTP 888
Query: 341 LQNNLHELWALLNFLLPDIFSSSDDFDSWFNTE---EFMGDHSI----IERLHSVLKPFL 393
+QNN+ ELWALL+F++P +F S D+F+ WF+ + G+ S+ + RLH +LKPF+
Sbjct: 889 IQNNMQELWALLHFIMPSLFDSHDEFNEWFSRDIESHAEGNSSLNQQQLRRLHMILKPFM 948
Query: 394 LRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425
LRR+K V+ L K E+ V L++ Q + Y
Sbjct: 949 LRRIKKNVQSELGDKIEIDVMCDLTQRQTKLY 980
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 38/41 (92%)
Query: 36 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76
+++YQ++GLNW+ +LY+ GINGILADEMGLGKT+Q+IS+L
Sbjct: 722 LKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLA 762
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,471,721
Number of Sequences: 539616
Number of extensions: 7483186
Number of successful extensions: 26749
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 181
Number of HSP's that attempted gapping in prelim test: 25317
Number of HSP's gapped (non-prelim): 977
length of query: 429
length of database: 191,569,459
effective HSP length: 120
effective length of query: 309
effective length of database: 126,815,539
effective search space: 39186001551
effective search space used: 39186001551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)