Query psy10683
Match_columns 429
No_of_seqs 444 out of 3363
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 15:58:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0385|consensus 100.0 1E-69 2.2E-74 539.7 26.9 341 77-429 74-416 (971)
2 PLN03142 Probable chromatin-re 100.0 3.4E-57 7.4E-62 483.7 30.1 321 79-429 96-418 (1033)
3 KOG0388|consensus 100.0 3.6E-58 7.7E-63 452.5 17.6 261 167-428 555-828 (1185)
4 KOG0391|consensus 100.0 4.3E-57 9.2E-62 462.2 18.1 254 176-429 611-871 (1958)
5 KOG0387|consensus 100.0 8.3E-56 1.8E-60 442.6 22.6 251 179-429 204-477 (923)
6 KOG0389|consensus 100.0 5.7E-54 1.2E-58 428.9 22.1 258 170-428 388-659 (941)
7 KOG0384|consensus 100.0 1.4E-53 3E-58 442.6 19.5 258 167-429 357-620 (1373)
8 KOG0386|consensus 100.0 4.9E-54 1.1E-58 438.4 13.8 261 167-428 381-652 (1157)
9 KOG0392|consensus 100.0 3.6E-51 7.9E-56 422.9 22.3 247 179-428 974-1238(1549)
10 PF00176 SNF2_N: SNF2 family N 100.0 8.3E-44 1.8E-48 342.8 21.5 242 184-428 1-260 (299)
11 KOG0390|consensus 100.0 3.3E-42 7.2E-47 353.4 24.1 252 178-429 236-514 (776)
12 KOG1015|consensus 100.0 9.3E-43 2E-47 352.1 18.8 249 179-429 667-960 (1567)
13 KOG4439|consensus 100.0 3E-43 6.5E-48 348.0 14.3 252 168-428 314-590 (901)
14 KOG1002|consensus 100.0 1.3E-39 2.9E-44 311.0 18.0 253 166-428 171-480 (791)
15 KOG1016|consensus 100.0 3.6E-37 7.8E-42 306.4 15.4 247 179-428 253-572 (1387)
16 COG0553 HepA Superfamily II DN 100.0 1E-36 2.2E-41 334.3 18.4 253 176-428 334-610 (866)
17 KOG1000|consensus 100.0 3.1E-35 6.6E-40 281.4 17.9 224 180-416 198-431 (689)
18 KOG0383|consensus 100.0 2.4E-35 5.3E-40 300.5 3.4 260 167-429 280-560 (696)
19 PRK04914 ATP-dependent helicas 100.0 1.5E-31 3.2E-36 286.1 23.2 242 178-425 150-447 (956)
20 KOG0298|consensus 100.0 4.2E-33 9.1E-38 291.6 9.3 225 197-427 372-636 (1394)
21 KOG1001|consensus 100.0 8.4E-31 1.8E-35 270.9 16.8 237 183-428 135-386 (674)
22 TIGR00603 rad25 DNA repair hel 99.9 1.1E-23 2.4E-28 218.8 19.2 195 178-426 253-464 (732)
23 COG1061 SSL2 DNA or RNA helica 99.8 2.1E-18 4.5E-23 174.1 17.7 199 177-427 33-238 (442)
24 PF04851 ResIII: Type III rest 99.8 1.9E-18 4E-23 153.9 13.8 153 179-342 2-184 (184)
25 PRK13766 Hef nuclease; Provisi 99.7 7.8E-16 1.7E-20 167.0 18.3 211 179-401 14-240 (773)
26 PHA02558 uvsW UvsW helicase; P 99.7 5.9E-16 1.3E-20 159.2 16.3 148 178-344 112-263 (501)
27 smart00487 DEXDc DEAD-like hel 99.6 4.7E-15 1E-19 132.8 15.4 160 178-344 6-174 (201)
28 cd00046 DEXDc DEAD-like helica 99.6 8.1E-15 1.8E-19 123.7 13.8 136 201-340 2-144 (144)
29 PRK11448 hsdR type I restricti 99.6 6.9E-15 1.5E-19 161.7 16.3 160 178-344 411-598 (1123)
30 TIGR00348 hsdR type I site-spe 99.6 4.3E-14 9.3E-19 149.6 16.1 156 179-343 237-405 (667)
31 COG4096 HsdR Type I site-speci 99.5 1.4E-14 3E-19 148.8 9.6 151 178-342 163-322 (875)
32 KOG1123|consensus 99.5 7.9E-15 1.7E-19 142.0 5.7 148 178-344 300-462 (776)
33 PF00270 DEAD: DEAD/DEAH box h 99.5 5.7E-13 1.2E-17 117.0 14.7 157 183-347 2-168 (169)
34 COG1111 MPH1 ERCC4-like helica 99.5 2.5E-12 5.5E-17 125.8 18.0 202 179-424 14-224 (542)
35 cd00268 DEADc DEAD-box helicas 99.5 1.8E-12 3.9E-17 117.6 16.1 155 180-341 21-185 (203)
36 TIGR00643 recG ATP-dependent D 99.4 4.1E-12 9E-17 134.2 17.0 161 178-346 233-402 (630)
37 TIGR00614 recQ_fam ATP-depende 99.4 3E-12 6.6E-17 131.0 14.8 167 179-358 10-190 (470)
38 KOG0385|consensus 99.4 1E-13 2.2E-18 140.4 3.6 76 2-77 132-209 (971)
39 KOG0354|consensus 99.4 4.7E-12 1E-16 130.4 15.2 171 178-358 60-238 (746)
40 PRK10917 ATP-dependent DNA hel 99.3 1.8E-11 3.8E-16 130.4 15.8 158 178-345 259-424 (681)
41 PRK11776 ATP-dependent RNA hel 99.3 6.8E-11 1.5E-15 120.9 16.3 154 180-341 26-189 (460)
42 PRK11057 ATP-dependent DNA hel 99.3 7E-11 1.5E-15 124.4 16.8 165 180-357 25-201 (607)
43 TIGR01389 recQ ATP-dependent D 99.3 7.7E-11 1.7E-15 124.1 16.7 166 179-357 12-189 (591)
44 TIGR00580 mfd transcription-re 99.3 7.9E-11 1.7E-15 127.8 16.9 159 178-346 449-615 (926)
45 PRK10590 ATP-dependent RNA hel 99.3 1.5E-10 3.2E-15 118.1 16.8 155 180-341 23-191 (456)
46 PTZ00424 helicase 45; Provisio 99.3 1.4E-10 3.1E-15 116.5 16.1 155 180-341 50-212 (401)
47 PRK11192 ATP-dependent RNA hel 99.2 1.6E-10 3.5E-15 117.3 16.4 164 180-350 23-198 (434)
48 PRK11634 ATP-dependent RNA hel 99.2 2E-10 4.3E-15 120.8 17.3 153 180-340 28-190 (629)
49 COG1200 RecG RecG-like helicas 99.2 8.3E-11 1.8E-15 119.8 13.7 158 179-346 261-427 (677)
50 PRK02362 ski2-like helicase; P 99.2 1.8E-10 3.9E-15 124.2 16.8 158 180-352 23-191 (737)
51 COG4889 Predicted helicase [Ge 99.2 3.2E-11 6.8E-16 124.0 9.4 159 177-340 158-350 (1518)
52 PRK10689 transcription-repair 99.2 1.9E-10 4.2E-15 127.4 16.2 158 179-346 599-764 (1147)
53 PRK00254 ski2-like helicase; P 99.2 3.5E-10 7.6E-15 121.7 17.3 159 180-352 23-189 (720)
54 KOG0384|consensus 99.2 3.8E-12 8.3E-17 134.9 1.8 60 20-79 355-414 (1373)
55 PRK01172 ski2-like helicase; P 99.2 4.2E-10 9E-15 120.4 17.0 157 179-350 21-187 (674)
56 PF13872 AAA_34: P-loop contai 99.2 9.7E-10 2.1E-14 102.9 16.1 233 176-427 33-302 (303)
57 PRK09401 reverse gyrase; Revie 99.2 7.2E-10 1.6E-14 123.2 17.3 130 178-315 78-214 (1176)
58 PLN00206 DEAD-box ATP-dependen 99.2 7.5E-10 1.6E-14 114.6 16.5 155 180-341 143-311 (518)
59 PRK01297 ATP-dependent RNA hel 99.2 4.9E-10 1.1E-14 115.0 14.9 157 179-341 108-281 (475)
60 KOG0388|consensus 99.1 8E-12 1.7E-16 125.6 1.1 66 23-96 556-621 (1185)
61 PRK04837 ATP-dependent RNA hel 99.1 1.2E-09 2.7E-14 110.5 16.4 155 180-341 30-201 (423)
62 PRK04537 ATP-dependent RNA hel 99.1 1.4E-09 3E-14 113.7 17.1 155 180-341 31-203 (572)
63 PTZ00110 helicase; Provisional 99.1 9.8E-10 2.1E-14 114.3 15.9 154 180-340 152-318 (545)
64 PRK13767 ATP-dependent helicas 99.1 2E-09 4.3E-14 117.7 18.0 161 179-350 31-225 (876)
65 PRK05580 primosome assembly pr 99.1 1.8E-09 4E-14 114.7 16.9 155 179-344 143-308 (679)
66 PLN03142 Probable chromatin-re 99.1 3E-11 6.6E-16 131.2 3.3 75 2-77 135-211 (1033)
67 PLN03137 ATP-dependent DNA hel 99.1 9.2E-10 2E-14 118.9 13.8 167 179-357 459-643 (1195)
68 COG1204 Superfamily II helicas 99.1 1.2E-09 2.7E-14 116.2 14.7 161 180-353 31-201 (766)
69 KOG0387|consensus 99.1 3.1E-11 6.6E-16 123.3 0.8 59 21-80 192-250 (923)
70 TIGR03817 DECH_helic helicase/ 99.0 5.3E-09 1.2E-13 112.2 16.7 155 180-348 36-210 (742)
71 COG1205 Distinct helicase fami 99.0 2.1E-09 4.5E-14 116.1 13.3 152 180-340 70-242 (851)
72 KOG0389|consensus 99.0 1.4E-10 3E-15 118.4 2.5 53 24-76 387-440 (941)
73 KOG0386|consensus 99.0 1.8E-10 3.8E-15 120.3 3.3 59 18-76 377-435 (1157)
74 TIGR01054 rgy reverse gyrase. 99.0 1E-08 2.2E-13 114.3 15.9 130 178-316 76-213 (1171)
75 TIGR03158 cas3_cyano CRISPR-as 99.0 1.6E-08 3.5E-13 99.7 15.6 150 184-342 1-193 (357)
76 COG1197 Mfd Transcription-repa 98.9 1.2E-08 2.6E-13 109.9 13.2 158 179-346 593-758 (1139)
77 TIGR00595 priA primosomal prot 98.9 2.3E-08 5E-13 102.7 14.0 129 204-342 2-141 (505)
78 TIGR01587 cas3_core CRISPR-ass 98.8 3.8E-08 8.3E-13 97.3 13.7 138 202-341 2-166 (358)
79 COG0610 Type I site-specific r 98.8 2.4E-08 5.3E-13 109.5 13.3 141 200-347 274-420 (962)
80 KOG0391|consensus 98.8 7E-10 1.5E-14 116.9 0.9 51 25-76 606-656 (1958)
81 COG4098 comFA Superfamily II D 98.8 1.2E-07 2.6E-12 89.0 15.3 147 178-342 95-245 (441)
82 COG0514 RecQ Superfamily II DN 98.8 4.5E-08 9.7E-13 100.1 12.1 168 179-359 16-195 (590)
83 TIGR02621 cas3_GSU0051 CRISPR- 98.8 8.4E-08 1.8E-12 102.2 14.4 157 178-341 13-216 (844)
84 PF07652 Flavi_DEAD: Flaviviru 98.8 6.7E-08 1.5E-12 80.8 10.4 131 198-342 3-138 (148)
85 PRK14701 reverse gyrase; Provi 98.8 1.4E-07 2.9E-12 107.9 16.2 131 178-315 77-213 (1638)
86 PRK15483 type III restriction- 98.8 9.9E-08 2.2E-12 102.4 14.2 140 201-342 61-240 (986)
87 COG1201 Lhr Lhr-like helicases 98.8 1E-07 2.3E-12 100.9 13.8 166 179-358 21-206 (814)
88 PHA02653 RNA helicase NPH-II; 98.7 2.5E-07 5.4E-12 97.5 13.1 160 173-341 153-332 (675)
89 KOG0952|consensus 98.6 2.9E-07 6.4E-12 97.3 12.3 174 181-370 111-310 (1230)
90 KOG0350|consensus 98.6 2.2E-07 4.9E-12 91.0 9.9 142 179-320 158-313 (620)
91 PRK09694 helicase Cas3; Provis 98.6 1.2E-06 2.5E-11 94.9 15.6 167 178-349 284-489 (878)
92 KOG0392|consensus 98.5 1.9E-08 4.2E-13 107.2 0.8 44 34-77 974-1017(1549)
93 TIGR03714 secA2 accessory Sec 98.5 1E-06 2.3E-11 93.0 12.9 150 180-352 68-232 (762)
94 KOG0331|consensus 98.5 1.3E-06 2.9E-11 87.9 12.3 153 180-339 113-280 (519)
95 PRK09751 putative ATP-dependen 98.5 1.8E-06 3.8E-11 97.5 14.6 142 204-352 1-179 (1490)
96 KOG1002|consensus 98.5 6E-08 1.3E-12 94.8 2.6 65 20-85 170-235 (791)
97 smart00489 DEXDc3 DEAD-like he 98.4 4.3E-06 9.4E-11 80.0 13.1 73 180-252 8-84 (289)
98 smart00488 DEXDc2 DEAD-like he 98.4 4.3E-06 9.4E-11 80.0 13.1 73 180-252 8-84 (289)
99 TIGR01407 dinG_rel DnaQ family 98.4 3.6E-06 7.9E-11 92.3 14.2 85 177-264 242-332 (850)
100 COG0513 SrmB Superfamily II DN 98.4 1.1E-05 2.4E-10 83.4 16.8 162 180-349 51-223 (513)
101 KOG0353|consensus 98.4 5.7E-06 1.2E-10 78.6 13.1 164 180-354 94-274 (695)
102 KOG0330|consensus 98.4 4.4E-06 9.5E-11 79.9 11.7 154 181-342 84-247 (476)
103 KOG1015|consensus 98.4 6.5E-08 1.4E-12 100.7 -0.6 46 34-79 667-721 (1567)
104 KOG0390|consensus 98.4 9.9E-08 2.1E-12 100.0 0.6 52 33-84 236-293 (776)
105 COG1110 Reverse gyrase [DNA re 98.3 6.8E-06 1.5E-10 87.3 13.6 129 178-314 80-215 (1187)
106 KOG0338|consensus 98.2 6.7E-06 1.5E-10 81.1 9.5 146 201-351 220-378 (691)
107 TIGR03117 cas_csf4 CRISPR-asso 98.2 2.2E-05 4.7E-10 82.2 13.6 68 185-253 2-70 (636)
108 KOG0345|consensus 98.2 4.4E-05 9.5E-10 74.8 14.2 154 180-339 28-197 (567)
109 KOG0343|consensus 98.2 1.5E-05 3.3E-10 79.4 11.1 170 180-359 91-273 (758)
110 KOG1000|consensus 98.1 3.2E-07 6.9E-12 89.9 -0.9 50 35-87 198-247 (689)
111 TIGR00963 secA preprotein tran 98.1 3.3E-06 7.1E-11 88.8 6.3 124 180-316 54-190 (745)
112 COG1202 Superfamily II helicas 98.1 2.1E-05 4.6E-10 78.8 11.4 168 179-354 215-394 (830)
113 PF13086 AAA_11: AAA domain; P 98.1 5.3E-05 1.1E-09 69.6 13.6 68 180-251 1-75 (236)
114 TIGR00604 rad3 DNA repair heli 98.1 2.5E-05 5.5E-10 84.1 12.4 72 180-251 10-82 (705)
115 KOG1016|consensus 98.1 4.3E-07 9.3E-12 93.0 -2.1 65 12-76 224-304 (1387)
116 TIGR01970 DEAH_box_HrpB ATP-de 98.1 5.7E-05 1.2E-09 81.8 13.8 141 192-344 10-160 (819)
117 KOG0351|consensus 98.0 2E-05 4.4E-10 85.5 9.4 171 179-361 263-451 (941)
118 KOG0348|consensus 98.0 2.1E-05 4.6E-10 78.1 8.5 148 185-340 164-341 (708)
119 PRK09200 preprotein translocas 98.0 5.2E-05 1.1E-09 81.0 11.9 123 180-315 76-212 (790)
120 PRK11664 ATP-dependent RNA hel 98.0 0.00011 2.4E-09 79.8 14.4 140 192-343 13-162 (812)
121 COG4581 Superfamily II RNA hel 98.0 6E-05 1.3E-09 81.8 12.0 157 177-354 116-282 (1041)
122 COG1198 PriA Primosomal protei 98.0 0.00011 2.4E-09 77.7 13.5 154 179-341 197-360 (730)
123 KOG0352|consensus 97.9 0.00017 3.7E-09 70.0 13.0 166 183-357 23-203 (641)
124 COG1203 CRISPR-associated heli 97.9 5.7E-05 1.2E-09 81.5 10.2 164 179-342 194-382 (733)
125 PF00176 SNF2_N: SNF2 family N 97.9 6.2E-06 1.4E-10 79.1 2.4 38 39-76 1-47 (299)
126 PRK12899 secA preprotein trans 97.9 0.00015 3.3E-09 77.8 12.5 138 180-341 92-243 (970)
127 PRK07246 bifunctional ATP-depe 97.9 0.00024 5.2E-09 77.5 14.3 84 175-263 240-328 (820)
128 KOG0335|consensus 97.9 7.7E-05 1.7E-09 74.3 9.5 155 179-340 95-272 (482)
129 KOG4439|consensus 97.8 6.2E-06 1.4E-10 84.1 1.8 54 22-76 313-367 (901)
130 COG0553 HepA Superfamily II DN 97.8 1.2E-05 2.6E-10 88.8 3.8 45 33-77 336-381 (866)
131 KOG0342|consensus 97.8 0.00017 3.7E-09 71.2 11.0 163 180-350 104-280 (543)
132 PRK08074 bifunctional ATP-depe 97.8 0.00045 9.7E-09 76.6 15.5 85 177-263 254-344 (928)
133 PF02562 PhoH: PhoH-like prote 97.8 2.9E-05 6.3E-10 69.9 5.0 147 182-346 6-161 (205)
134 KOG0947|consensus 97.8 9.9E-05 2.2E-09 78.0 9.2 141 178-339 295-443 (1248)
135 KOG0383|consensus 97.8 8.6E-06 1.9E-10 84.9 1.3 58 21-78 279-338 (696)
136 PRK12898 secA preprotein trans 97.7 0.0006 1.3E-08 71.5 14.5 122 178-314 101-254 (656)
137 PRK11131 ATP-dependent RNA hel 97.7 0.00036 7.9E-09 78.0 12.5 134 193-341 83-229 (1294)
138 KOG0347|consensus 97.6 0.00042 9.2E-09 69.4 9.7 136 202-340 222-386 (731)
139 PRK13104 secA preprotein trans 97.6 0.00049 1.1E-08 74.0 10.9 121 180-315 82-215 (896)
140 KOG0951|consensus 97.5 0.00037 8.1E-09 75.7 9.6 148 197-350 323-492 (1674)
141 KOG4284|consensus 97.5 0.00029 6.3E-09 71.7 8.0 157 183-348 50-216 (980)
142 PF13401 AAA_22: AAA domain; P 97.5 0.0003 6.4E-09 58.6 6.8 116 199-340 4-125 (131)
143 COG3587 Restriction endonuclea 97.4 0.00078 1.7E-08 70.8 10.0 135 200-340 75-242 (985)
144 KOG0328|consensus 97.4 0.00063 1.4E-08 62.8 8.3 166 183-360 52-226 (400)
145 PRK14873 primosome assembly pr 97.4 0.0011 2.4E-08 70.3 11.5 125 208-341 169-304 (665)
146 PF09848 DUF2075: Uncharacteri 97.4 0.00094 2E-08 65.9 10.1 90 202-316 4-97 (352)
147 PF07517 SecA_DEAD: SecA DEAD- 97.4 0.0032 6.9E-08 59.1 13.0 120 178-314 75-209 (266)
148 PRK11747 dinG ATP-dependent DN 97.4 0.0024 5.3E-08 68.6 13.8 64 177-242 22-90 (697)
149 KOG0948|consensus 97.4 0.00054 1.2E-08 70.9 8.1 140 178-339 127-275 (1041)
150 PF13604 AAA_30: AAA domain; P 97.4 0.0034 7.3E-08 56.5 12.5 125 180-343 1-133 (196)
151 KOG0340|consensus 97.4 0.0012 2.5E-08 63.0 9.4 157 181-348 30-201 (442)
152 PRK10536 hypothetical protein; 97.3 0.0028 6.1E-08 58.9 11.8 144 181-345 60-217 (262)
153 KOG1513|consensus 97.3 0.00095 2.1E-08 69.5 9.3 238 176-427 260-536 (1300)
154 TIGR01967 DEAH_box_HrpA ATP-de 97.3 0.0025 5.5E-08 71.6 12.9 138 192-341 75-222 (1283)
155 KOG0334|consensus 97.2 0.001 2.2E-08 71.5 8.2 153 180-340 387-556 (997)
156 KOG0339|consensus 97.2 0.0058 1.3E-07 60.9 12.4 135 203-340 264-411 (731)
157 PRK13103 secA preprotein trans 97.2 0.0022 4.9E-08 68.9 10.1 119 180-315 82-215 (913)
158 COG0556 UvrB Helicase subunit 97.1 0.0017 3.8E-08 65.0 8.2 69 184-258 16-86 (663)
159 PRK12904 preprotein translocas 97.1 0.0035 7.5E-08 67.4 10.7 121 179-314 80-213 (830)
160 PRK13107 preprotein translocas 97.1 0.0059 1.3E-07 65.8 12.2 145 181-353 83-240 (908)
161 KOG1132|consensus 97.0 0.0068 1.5E-07 64.2 12.0 82 179-260 20-141 (945)
162 PRK12326 preprotein translocas 97.0 0.0054 1.2E-07 64.6 11.0 122 178-314 76-210 (764)
163 cd00009 AAA The AAA+ (ATPases 97.0 0.017 3.6E-07 48.2 12.0 36 189-224 7-44 (151)
164 COG1875 NYN ribonuclease and A 96.9 0.0032 6.9E-08 60.6 7.8 144 183-343 231-390 (436)
165 KOG1802|consensus 96.9 0.011 2.3E-07 60.9 11.7 76 179-262 409-485 (935)
166 KOG1803|consensus 96.9 0.0053 1.2E-07 62.6 9.5 65 178-248 183-248 (649)
167 TIGR00376 DNA helicase, putati 96.8 0.013 2.8E-07 62.3 12.2 67 179-251 156-223 (637)
168 KOG0346|consensus 96.7 0.0052 1.1E-07 60.2 7.5 149 185-340 46-211 (569)
169 TIGR01447 recD exodeoxyribonuc 96.7 0.015 3.3E-07 61.1 11.6 139 183-342 148-297 (586)
170 KOG0341|consensus 96.7 0.00075 1.6E-08 64.8 1.6 149 183-340 195-367 (610)
171 KOG0949|consensus 96.7 0.023 5E-07 61.0 12.4 158 184-353 515-682 (1330)
172 PRK12906 secA preprotein trans 96.6 0.011 2.5E-07 63.2 10.2 122 178-314 78-212 (796)
173 KOG0922|consensus 96.6 0.015 3.3E-07 60.0 10.4 148 192-351 59-216 (674)
174 KOG0337|consensus 96.6 0.0048 1E-07 60.2 6.4 132 205-340 64-205 (529)
175 TIGR01448 recD_rel helicase, p 96.6 0.027 5.8E-07 60.9 12.8 134 178-342 321-454 (720)
176 TIGR02562 cas3_yersinia CRISPR 96.4 0.046 1E-06 59.9 13.2 169 182-350 410-644 (1110)
177 KOG0336|consensus 96.4 0.012 2.7E-07 57.1 7.9 145 198-345 256-412 (629)
178 PLN03025 replication factor C 96.4 0.12 2.6E-06 50.3 15.0 59 302-360 99-158 (319)
179 smart00382 AAA ATPases associa 96.4 0.026 5.6E-07 46.5 9.0 45 200-247 3-47 (148)
180 PRK10875 recD exonuclease V su 96.4 0.016 3.5E-07 61.0 9.2 141 181-342 153-303 (615)
181 PRK04296 thymidine kinase; Pro 96.3 0.027 5.8E-07 50.4 9.3 34 202-238 5-38 (190)
182 KOG0333|consensus 96.3 0.032 6.9E-07 56.1 10.3 127 181-314 268-408 (673)
183 PRK14956 DNA polymerase III su 96.2 0.044 9.6E-07 55.7 11.2 42 184-225 22-66 (484)
184 PRK07003 DNA polymerase III su 96.2 0.11 2.4E-06 55.5 14.4 41 185-225 21-64 (830)
185 KOG0344|consensus 96.2 0.0054 1.2E-07 62.1 4.5 131 181-317 159-303 (593)
186 TIGR02881 spore_V_K stage V sp 96.2 0.029 6.2E-07 52.9 9.2 25 201-225 44-68 (261)
187 PRK12723 flagellar biosynthesi 96.2 0.1 2.2E-06 51.9 13.3 128 202-357 177-314 (388)
188 COG3421 Uncharacterized protei 95.8 0.012 2.6E-07 60.0 4.9 107 205-315 3-125 (812)
189 PRK12323 DNA polymerase III su 95.8 0.28 6E-06 51.7 15.0 41 185-225 21-64 (700)
190 PRK12902 secA preprotein trans 95.8 0.091 2E-06 56.8 11.7 121 179-314 84-217 (939)
191 KOG0950|consensus 95.8 0.059 1.3E-06 57.9 10.0 153 181-344 224-391 (1008)
192 PRK09112 DNA polymerase III su 95.8 0.08 1.7E-06 52.1 10.5 41 185-225 28-71 (351)
193 KOG1805|consensus 95.7 0.079 1.7E-06 57.1 10.6 146 180-341 669-830 (1100)
194 KOG0920|consensus 95.7 0.075 1.6E-06 57.8 10.6 147 193-350 182-339 (924)
195 PF02399 Herpes_ori_bp: Origin 95.7 0.042 9.2E-07 58.5 8.6 126 203-340 53-190 (824)
196 COG1643 HrpA HrpA-like helicas 95.7 0.055 1.2E-06 58.7 9.6 144 192-350 58-215 (845)
197 PRK14960 DNA polymerase III su 95.6 0.32 6.9E-06 51.4 14.6 41 185-225 20-63 (702)
198 PF00448 SRP54: SRP54-type pro 95.6 0.12 2.6E-06 46.4 10.2 134 203-357 5-142 (196)
199 TIGR00631 uvrb excinuclease AB 95.6 0.055 1.2E-06 57.7 9.2 74 182-261 11-86 (655)
200 PF12340 DUF3638: Protein of u 95.6 0.023 5E-07 51.8 5.5 74 178-254 21-94 (229)
201 PRK04914 ATP-dependent helicas 95.5 0.0068 1.5E-07 66.7 2.3 40 34-75 151-190 (956)
202 CHL00122 secA preprotein trans 95.5 0.08 1.7E-06 57.1 9.9 122 178-314 74-208 (870)
203 PRK14949 DNA polymerase III su 95.5 0.13 2.9E-06 55.8 11.5 41 185-225 21-64 (944)
204 PRK05298 excinuclease ABC subu 95.4 0.14 3E-06 54.8 11.6 78 178-261 10-89 (652)
205 KOG0326|consensus 95.4 0.016 3.4E-07 54.7 3.8 132 203-339 125-267 (459)
206 PF05621 TniB: Bacterial TniB 95.2 1.1 2.4E-05 42.7 15.6 163 183-369 40-222 (302)
207 PRK14958 DNA polymerase III su 95.2 0.64 1.4E-05 48.2 15.2 41 185-225 21-64 (509)
208 KOG0924|consensus 95.2 0.11 2.4E-06 54.0 9.2 145 192-350 364-520 (1042)
209 KOG0989|consensus 95.1 0.12 2.7E-06 48.8 8.7 42 184-225 40-83 (346)
210 PF13245 AAA_19: Part of AAA d 95.1 0.1 2.2E-06 39.2 6.7 44 201-244 12-56 (76)
211 PRK12402 replication factor C 95.1 0.14 3.1E-06 49.9 9.7 41 185-225 20-62 (337)
212 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.25 5.4E-06 45.1 10.7 26 200-225 39-64 (226)
213 PRK08181 transposase; Validate 95.0 0.34 7.4E-06 45.8 11.6 45 181-225 88-132 (269)
214 CHL00181 cbbX CbbX; Provisiona 94.9 0.12 2.6E-06 49.4 8.4 24 202-225 62-85 (287)
215 KOG0332|consensus 94.9 0.33 7.2E-06 47.1 11.1 157 179-340 95-274 (477)
216 KOG0329|consensus 94.9 0.091 2E-06 48.2 7.0 134 199-340 79-227 (387)
217 COG1199 DinG Rad3-related DNA 94.9 0.1 2.3E-06 56.0 8.8 71 176-248 11-82 (654)
218 TIGR02880 cbbX_cfxQ probable R 94.8 0.11 2.4E-06 49.6 7.9 25 201-225 60-84 (284)
219 KOG0327|consensus 94.8 0.047 1E-06 52.8 5.2 152 183-340 51-210 (397)
220 KOG0991|consensus 94.8 0.069 1.5E-06 48.5 5.9 86 200-323 49-134 (333)
221 PRK14952 DNA polymerase III su 94.8 0.24 5.3E-06 52.0 10.9 41 185-225 18-61 (584)
222 KOG0925|consensus 94.8 0.045 9.7E-07 54.6 5.0 142 194-350 57-211 (699)
223 PRK07994 DNA polymerase III su 94.7 0.37 8.1E-06 51.1 12.2 41 185-225 21-64 (647)
224 PRK11889 flhF flagellar biosyn 94.7 0.62 1.3E-05 46.3 12.7 127 202-357 244-379 (436)
225 PRK07764 DNA polymerase III su 94.7 0.18 3.9E-06 55.1 10.0 41 185-225 20-63 (824)
226 PRK06835 DNA replication prote 94.7 0.84 1.8E-05 44.5 13.7 47 179-225 159-209 (329)
227 TIGR03015 pepcterm_ATPase puta 94.6 0.64 1.4E-05 43.6 12.5 41 183-223 26-67 (269)
228 PRK05703 flhF flagellar biosyn 94.6 0.55 1.2E-05 47.5 12.5 128 202-357 224-359 (424)
229 KOG0951|consensus 94.5 0.16 3.5E-06 56.3 8.8 133 197-343 1157-1301(1674)
230 PRK08084 DNA replication initi 94.5 0.71 1.5E-05 42.7 12.3 39 186-224 30-70 (235)
231 PF13177 DNA_pol3_delta2: DNA 94.4 0.68 1.5E-05 40.2 11.3 43 185-227 2-47 (162)
232 PRK14961 DNA polymerase III su 94.4 0.41 8.8E-06 47.5 11.0 41 184-224 20-63 (363)
233 PRK12901 secA preprotein trans 94.0 0.71 1.5E-05 50.9 12.5 129 199-350 182-326 (1112)
234 PF06733 DEAD_2: DEAD_2; Inte 94.0 0.048 1E-06 47.9 3.2 38 279-316 118-159 (174)
235 PRK06526 transposase; Provisio 94.0 0.36 7.8E-06 45.3 9.2 29 197-225 96-124 (254)
236 PF00004 AAA: ATPase family as 94.0 0.2 4.2E-06 41.2 6.7 35 203-243 2-36 (132)
237 PRK08691 DNA polymerase III su 93.9 2.3 5E-05 45.4 15.8 41 185-225 21-64 (709)
238 PRK14962 DNA polymerase III su 93.9 0.42 9.2E-06 49.0 10.2 41 185-225 19-62 (472)
239 TIGR02928 orc1/cdc6 family rep 93.9 1.2 2.6E-05 44.0 13.3 45 181-225 19-66 (365)
240 PRK07471 DNA polymerase III su 93.9 0.61 1.3E-05 46.2 11.0 42 185-226 24-68 (365)
241 PRK05707 DNA polymerase III su 93.9 0.48 1E-05 46.2 10.2 44 181-225 4-48 (328)
242 PRK14951 DNA polymerase III su 93.9 1.4 3.1E-05 46.6 14.2 41 185-225 21-64 (618)
243 KOG0926|consensus 93.8 0.21 4.5E-06 53.0 7.8 149 194-355 266-439 (1172)
244 PRK08058 DNA polymerase III su 93.8 0.68 1.5E-05 45.2 11.2 42 184-225 10-54 (329)
245 PRK14955 DNA polymerase III su 93.8 2.7 5.8E-05 42.2 15.7 41 185-225 21-64 (397)
246 PRK14974 cell division protein 93.8 0.99 2.2E-05 44.1 12.2 46 202-250 143-192 (336)
247 PRK12900 secA preprotein trans 93.7 0.71 1.5E-05 50.7 11.8 130 182-339 140-284 (1025)
248 PRK06645 DNA polymerase III su 93.7 0.83 1.8E-05 47.2 12.0 42 184-225 25-69 (507)
249 PTZ00112 origin recognition co 93.6 4.9 0.00011 44.1 17.6 46 180-225 758-807 (1164)
250 PRK14964 DNA polymerase III su 93.6 2.4 5.2E-05 43.6 15.0 41 185-225 18-61 (491)
251 PRK07940 DNA polymerase III su 93.6 0.28 6.1E-06 49.0 8.1 41 185-225 10-62 (394)
252 PRK12903 secA preprotein trans 93.5 0.59 1.3E-05 50.6 10.6 119 179-314 77-210 (925)
253 PRK14963 DNA polymerase III su 93.5 1.4 3E-05 45.7 13.2 41 185-225 19-62 (504)
254 PF07015 VirC1: VirC1 protein; 93.3 1.2 2.6E-05 40.8 11.0 43 207-252 10-54 (231)
255 PRK00440 rfc replication facto 93.3 3.5 7.7E-05 39.6 15.3 40 185-224 22-63 (319)
256 PRK09111 DNA polymerase III su 93.3 1.4 3.1E-05 46.5 13.2 41 185-225 29-72 (598)
257 PRK14957 DNA polymerase III su 93.2 1.1 2.4E-05 46.7 12.1 41 185-225 21-64 (546)
258 PRK00149 dnaA chromosomal repl 93.2 1.3 2.7E-05 45.4 12.5 24 202-225 151-174 (450)
259 PRK08451 DNA polymerase III su 93.2 0.95 2.1E-05 47.0 11.4 41 185-225 19-62 (535)
260 COG3267 ExeA Type II secretory 93.2 1.3 2.7E-05 41.1 10.9 60 188-251 39-105 (269)
261 PHA02533 17 large terminase pr 93.2 0.66 1.4E-05 48.3 10.3 155 179-350 58-220 (534)
262 TIGR02768 TraA_Ti Ti-type conj 93.1 0.77 1.7E-05 50.0 11.1 127 178-341 350-477 (744)
263 PF05876 Terminase_GpA: Phage 93.1 0.16 3.5E-06 53.2 5.8 165 179-353 15-192 (557)
264 cd01120 RecA-like_NTPases RecA 93.1 1.4 3.1E-05 37.3 10.9 34 203-239 3-36 (165)
265 PF13173 AAA_14: AAA domain 93.1 1.2 2.5E-05 36.9 9.9 41 302-343 61-101 (128)
266 KOG0923|consensus 93.0 0.43 9.3E-06 49.6 8.3 143 194-350 275-430 (902)
267 PRK14950 DNA polymerase III su 92.8 3.5 7.6E-05 43.7 15.4 41 184-224 20-63 (585)
268 PRK04195 replication factor C 92.8 2 4.3E-05 44.3 13.3 42 182-223 19-63 (482)
269 cd01121 Sms Sms (bacterial rad 92.7 1.2 2.5E-05 44.3 10.9 87 202-315 85-171 (372)
270 PHA02544 44 clamp loader, smal 92.7 1.3 2.8E-05 42.8 11.2 49 302-350 100-150 (316)
271 TIGR00362 DnaA chromosomal rep 92.6 1.7 3.6E-05 43.8 12.2 24 202-225 139-162 (405)
272 PRK14087 dnaA chromosomal repl 92.6 2.2 4.7E-05 43.6 13.0 46 202-248 144-189 (450)
273 PRK08116 hypothetical protein; 92.6 1.9 4.2E-05 40.7 11.9 40 201-243 116-155 (268)
274 PRK14088 dnaA chromosomal repl 92.4 3 6.5E-05 42.5 13.8 24 202-225 133-156 (440)
275 cd01124 KaiC KaiC is a circadi 92.4 1.3 2.9E-05 38.8 10.1 47 203-252 3-49 (187)
276 PRK07993 DNA polymerase III su 92.4 1.2 2.6E-05 43.5 10.4 46 180-225 2-50 (334)
277 PRK06647 DNA polymerase III su 92.4 1 2.2E-05 47.3 10.5 41 185-225 21-64 (563)
278 TIGR03345 VI_ClpV1 type VI sec 92.2 1.1 2.5E-05 49.4 11.2 41 185-225 192-234 (852)
279 KOG1131|consensus 92.2 0.46 1E-05 48.1 7.2 67 175-241 11-77 (755)
280 PRK14969 DNA polymerase III su 92.1 1.9 4.2E-05 44.9 12.1 41 185-225 21-64 (527)
281 COG1419 FlhF Flagellar GTP-bin 92.0 4.6 9.9E-05 40.2 13.8 134 201-359 205-342 (407)
282 PRK05642 DNA replication initi 92.0 3.3 7.1E-05 38.3 12.4 37 303-339 98-138 (234)
283 PRK06871 DNA polymerase III su 92.0 1.8 4E-05 42.0 11.1 45 181-225 3-50 (325)
284 PRK14959 DNA polymerase III su 91.9 4.1 8.9E-05 43.1 14.2 41 185-225 21-64 (624)
285 PRK14965 DNA polymerase III su 91.9 1.1 2.4E-05 47.2 10.3 41 185-225 21-64 (576)
286 PRK08727 hypothetical protein; 91.8 1.4 3E-05 40.7 9.8 24 202-225 44-67 (233)
287 PHA03368 DNA packaging termina 91.8 0.3 6.5E-06 51.3 5.6 146 202-360 257-421 (738)
288 PRK08769 DNA polymerase III su 91.8 2.4 5.1E-05 41.2 11.6 46 180-225 4-52 (319)
289 COG0464 SpoVK ATPases of the A 91.8 0.76 1.7E-05 47.5 8.8 68 180-253 249-324 (494)
290 PRK14722 flhF flagellar biosyn 91.7 1.7 3.7E-05 43.1 10.6 128 199-354 137-271 (374)
291 PRK13889 conjugal transfer rel 91.6 1.7 3.7E-05 48.5 11.6 128 178-343 344-473 (988)
292 PF00580 UvrD-helicase: UvrD/R 91.5 0.38 8.1E-06 46.1 5.9 56 181-242 1-57 (315)
293 PRK06893 DNA replication initi 91.4 3 6.6E-05 38.3 11.6 24 202-225 42-65 (229)
294 PRK14953 DNA polymerase III su 91.3 4.1 8.9E-05 42.0 13.4 41 184-224 20-63 (486)
295 PRK05896 DNA polymerase III su 91.3 7.4 0.00016 41.1 15.2 41 185-225 21-64 (605)
296 PRK08903 DnaA regulatory inact 91.2 1.8 4E-05 39.5 9.9 26 199-224 42-67 (227)
297 PRK06090 DNA polymerase III su 91.0 2.9 6.3E-05 40.6 11.3 47 180-226 3-52 (319)
298 PRK13342 recombination factor 90.8 2.1 4.5E-05 43.2 10.6 21 201-221 38-58 (413)
299 PRK05563 DNA polymerase III su 90.8 7.7 0.00017 40.8 15.1 41 185-225 21-64 (559)
300 TIGR00596 rad1 DNA repair prot 90.8 0.86 1.9E-05 49.8 8.2 115 282-428 9-133 (814)
301 TIGR00603 rad25 DNA repair hel 90.8 0.16 3.4E-06 54.4 2.6 43 33-76 253-295 (732)
302 PTZ00293 thymidine kinase; Pro 90.8 1.9 4.1E-05 39.1 9.1 35 203-240 8-42 (211)
303 PRK07133 DNA polymerase III su 90.7 1.8 3.9E-05 46.5 10.4 41 185-225 23-66 (725)
304 PRK14954 DNA polymerase III su 90.6 1.9 4E-05 45.8 10.3 41 185-225 21-64 (620)
305 PRK11823 DNA repair protein Ra 90.6 2.6 5.6E-05 43.0 11.1 47 202-251 83-129 (446)
306 PRK14948 DNA polymerase III su 90.5 3.6 7.8E-05 43.8 12.4 42 184-225 20-64 (620)
307 PRK00411 cdc6 cell division co 90.4 5 0.00011 40.0 12.9 44 182-225 35-81 (394)
308 PRK13826 Dtr system oriT relax 90.3 2.7 5.9E-05 47.4 11.6 128 179-343 380-508 (1102)
309 TIGR03346 chaperone_ClpB ATP-d 90.0 2.2 4.8E-05 47.3 10.7 39 186-224 179-219 (852)
310 COG0552 FtsY Signal recognitio 89.9 3.4 7.3E-05 39.9 10.4 123 203-347 143-276 (340)
311 PRK06731 flhF flagellar biosyn 89.9 7.6 0.00016 36.7 12.8 128 200-357 76-213 (270)
312 COG2256 MGS1 ATPase related to 89.8 0.58 1.3E-05 46.1 5.3 34 304-339 106-139 (436)
313 PRK12727 flagellar biosynthesi 89.8 8.3 0.00018 40.0 13.8 35 202-237 353-387 (559)
314 KOG0740|consensus 89.8 2.1 4.6E-05 42.9 9.3 46 201-252 188-233 (428)
315 COG1435 Tdk Thymidine kinase [ 89.7 3 6.6E-05 37.1 9.2 108 203-339 8-118 (201)
316 CHL00095 clpC Clp protease ATP 89.6 2.5 5.4E-05 46.7 10.7 27 199-225 200-226 (821)
317 PF13481 AAA_25: AAA domain; P 89.5 2.7 5.9E-05 37.1 9.2 55 199-253 32-93 (193)
318 PF00308 Bac_DnaA: Bacterial d 89.4 9.8 0.00021 34.7 13.0 53 302-354 97-157 (219)
319 PRK06904 replicative DNA helic 89.3 6.2 0.00013 40.6 12.7 123 192-316 214-348 (472)
320 TIGR02639 ClpA ATP-dependent C 89.3 3.2 6.9E-05 45.2 11.2 27 199-225 203-229 (731)
321 PHA03372 DNA packaging termina 89.1 0.62 1.3E-05 48.4 5.1 147 203-360 206-368 (668)
322 TIGR03689 pup_AAA proteasome A 89.0 1.9 4.1E-05 44.6 8.6 27 199-225 216-242 (512)
323 TIGR02397 dnaX_nterm DNA polym 88.8 9.4 0.0002 37.4 13.4 41 185-225 19-62 (355)
324 PRK00771 signal recognition pa 88.6 6.2 0.00014 40.1 11.9 33 202-237 98-130 (437)
325 COG1066 Sms Predicted ATP-depe 88.6 2.9 6.2E-05 41.5 9.1 87 203-317 97-183 (456)
326 COG0593 DnaA ATPase involved i 88.6 5.8 0.00013 39.7 11.4 53 302-354 175-235 (408)
327 PRK14086 dnaA chromosomal repl 88.4 5.3 0.00011 42.2 11.5 99 202-340 317-419 (617)
328 PRK09165 replicative DNA helic 88.3 6 0.00013 41.0 11.9 119 198-316 216-355 (497)
329 PRK05986 cob(I)alamin adenolsy 88.1 4.2 9.2E-05 36.2 9.1 145 199-357 22-174 (191)
330 KOG0737|consensus 88.0 1.8 3.9E-05 42.2 7.2 50 198-253 126-175 (386)
331 cd03115 SRP The signal recogni 88.0 7.9 0.00017 33.6 11.0 23 203-225 4-26 (173)
332 PRK06305 DNA polymerase III su 88.0 17 0.00036 37.2 14.7 41 185-225 22-65 (451)
333 COG0470 HolB ATPase involved i 87.7 2.4 5.2E-05 40.8 8.3 25 202-226 27-51 (325)
334 TIGR00416 sms DNA repair prote 87.6 5.4 0.00012 40.8 10.9 47 202-251 97-143 (454)
335 PRK12724 flagellar biosynthesi 87.6 7.9 0.00017 39.0 11.6 57 300-357 297-361 (432)
336 PHA03333 putative ATPase subun 87.5 5.5 0.00012 42.4 10.8 149 183-341 172-332 (752)
337 PRK12422 chromosomal replicati 87.4 3.6 7.9E-05 41.9 9.5 24 202-225 144-167 (445)
338 cd01122 GP4d_helicase GP4d_hel 87.4 12 0.00026 35.0 12.7 49 199-249 30-78 (271)
339 TIGR00678 holB DNA polymerase 87.3 4.9 0.00011 35.5 9.4 24 202-225 17-40 (188)
340 PF01443 Viral_helicase1: Vira 87.2 0.98 2.1E-05 41.3 4.9 42 302-346 62-103 (234)
341 PRK09376 rho transcription ter 87.2 2.7 5.8E-05 41.8 8.0 29 197-225 167-195 (416)
342 cd01128 rho_factor Transcripti 87.2 1.8 3.8E-05 40.5 6.6 26 197-222 14-39 (249)
343 PRK08760 replicative DNA helic 87.0 7.7 0.00017 39.9 11.7 53 198-252 228-280 (476)
344 CHL00176 ftsH cell division pr 86.9 7.9 0.00017 41.4 11.9 23 200-222 217-239 (638)
345 CHL00206 ycf2 Ycf2; Provisiona 86.8 2.6 5.7E-05 49.7 8.7 40 200-245 1631-1670(2281)
346 PF03354 Terminase_1: Phage Te 86.8 4.3 9.2E-05 41.9 9.8 128 183-326 1-145 (477)
347 PF00265 TK: Thymidine kinase; 86.7 1.2 2.6E-05 39.2 4.9 34 203-239 5-38 (176)
348 COG4626 Phage terminase-like p 86.6 1.2 2.5E-05 45.8 5.3 170 179-362 60-249 (546)
349 PRK11054 helD DNA helicase IV; 86.5 1.7 3.8E-05 46.7 6.9 67 179-251 195-263 (684)
350 TIGR03600 phage_DnaB phage rep 86.5 9.8 0.00021 38.5 12.1 51 196-248 191-241 (421)
351 TIGR00708 cobA cob(I)alamin ad 86.4 4.7 0.0001 35.3 8.4 61 295-355 90-154 (173)
352 PRK11034 clpA ATP-dependent Cl 86.4 4.9 0.00011 43.8 10.3 26 199-224 207-232 (758)
353 COG2812 DnaX DNA polymerase II 86.2 1.6 3.4E-05 45.0 6.1 41 185-225 21-64 (515)
354 PRK10416 signal recognition pa 86.2 14 0.0003 35.9 12.4 32 203-237 118-149 (318)
355 TIGR01243 CDC48 AAA family ATP 86.2 2.5 5.5E-05 46.0 8.1 42 200-247 488-529 (733)
356 PTZ00454 26S protease regulato 86.0 1.7 3.8E-05 43.5 6.2 41 199-245 179-219 (398)
357 PRK05748 replicative DNA helic 85.9 8.8 0.00019 39.2 11.5 52 196-249 200-251 (448)
358 PRK10865 protein disaggregatio 85.7 4.2 9.2E-05 45.1 9.6 37 188-224 186-224 (857)
359 PF06564 YhjQ: YhjQ protein; 85.6 4.9 0.00011 37.3 8.5 35 205-242 8-44 (243)
360 PRK14712 conjugal transfer nic 85.5 9.1 0.0002 45.0 12.2 133 180-343 835-970 (1623)
361 COG0653 SecA Preprotein transl 85.5 12 0.00027 40.6 12.4 135 198-355 92-241 (822)
362 PRK03992 proteasome-activating 85.4 1.9 4.1E-05 43.2 6.2 39 200-244 166-204 (389)
363 TIGR02640 gas_vesic_GvpN gas v 85.3 2.6 5.5E-05 39.7 6.8 49 183-237 5-53 (262)
364 PRK08840 replicative DNA helic 85.3 12 0.00026 38.4 12.0 53 196-250 214-266 (464)
365 COG1484 DnaC DNA replication p 85.3 4.2 9.2E-05 38.1 8.1 63 184-249 90-152 (254)
366 cd00984 DnaB_C DnaB helicase C 85.2 8 0.00017 35.5 10.0 39 199-239 13-51 (242)
367 cd01125 repA Hexameric Replica 85.1 13 0.00028 34.2 11.4 52 201-252 3-66 (239)
368 PRK08506 replicative DNA helic 85.1 11 0.00023 38.9 11.6 50 197-249 190-239 (472)
369 cd02037 MRP-like MRP (Multiple 85.1 11 0.00024 32.5 10.3 113 203-357 4-118 (169)
370 KOG0952|consensus 85.0 0.92 2E-05 49.7 3.9 108 201-317 945-1061(1230)
371 KOG1001|consensus 84.9 0.4 8.7E-06 51.1 1.2 39 38-76 135-174 (674)
372 PRK10919 ATP-dependent DNA hel 84.9 1.5 3.2E-05 47.3 5.5 54 180-239 2-56 (672)
373 PRK10867 signal recognition pa 84.9 13 0.00028 37.8 11.8 44 202-247 103-150 (433)
374 PRK13849 putative crown gall t 84.9 11 0.00025 34.6 10.7 39 207-248 10-50 (231)
375 PRK07952 DNA replication prote 84.9 5.3 0.00011 37.2 8.5 62 183-251 79-144 (244)
376 PRK07004 replicative DNA helic 84.9 6.9 0.00015 40.1 10.1 117 197-315 211-337 (460)
377 PRK04132 replication factor C 84.9 4.4 9.5E-05 44.5 9.0 48 302-349 630-678 (846)
378 PRK13341 recombination factor 84.7 6.1 0.00013 42.9 10.0 22 201-222 54-75 (725)
379 TIGR01242 26Sp45 26S proteasom 84.4 4.1 8.8E-05 40.3 8.0 25 199-223 156-180 (364)
380 PHA00673 acetyltransferase dom 84.4 1.9 4.1E-05 37.0 4.8 44 303-346 88-134 (154)
381 TIGR00665 DnaB replicative DNA 84.3 14 0.00031 37.5 12.1 50 198-249 194-243 (434)
382 PRK13709 conjugal transfer nic 84.2 12 0.00025 44.6 12.5 133 179-342 966-1101(1747)
383 KOG0780|consensus 84.2 3.8 8.2E-05 40.3 7.2 56 203-261 105-160 (483)
384 cd00561 CobA_CobO_BtuR ATP:cor 84.1 18 0.00038 31.3 10.8 59 295-353 88-150 (159)
385 PRK14971 DNA polymerase III su 84.1 40 0.00087 36.0 15.6 40 185-224 22-64 (614)
386 PRK09183 transposase/IS protei 84.1 12 0.00026 35.2 10.6 29 196-224 99-127 (259)
387 PRK06964 DNA polymerase III su 83.9 11 0.00023 37.0 10.5 46 181-226 2-48 (342)
388 TIGR01074 rep ATP-dependent DN 83.5 3.2 7E-05 44.6 7.4 67 181-253 2-70 (664)
389 PF01695 IstB_IS21: IstB-like 83.4 2.7 5.8E-05 37.1 5.6 39 196-237 44-82 (178)
390 PLN00020 ribulose bisphosphate 83.3 2.1 4.5E-05 42.2 5.2 45 201-251 150-194 (413)
391 TIGR00064 ftsY signal recognit 83.2 27 0.00058 33.1 12.7 32 203-237 76-107 (272)
392 PRK08533 flagellar accessory p 83.2 12 0.00027 34.3 10.2 39 199-240 24-62 (230)
393 TIGR00767 rho transcription te 83.0 4.6 9.9E-05 40.4 7.5 28 197-224 166-193 (415)
394 PRK13833 conjugal transfer pro 83.0 3.6 7.7E-05 40.0 6.7 133 178-352 126-259 (323)
395 PRK07276 DNA polymerase III su 82.5 18 0.00038 34.6 11.1 45 180-225 2-48 (290)
396 TIGR01425 SRP54_euk signal rec 82.3 30 0.00066 35.0 13.2 33 203-238 104-136 (429)
397 KOG0739|consensus 82.3 1.8 3.9E-05 41.1 4.1 46 201-252 168-213 (439)
398 PHA02542 41 41 helicase; Provi 82.1 12 0.00027 38.4 10.6 46 201-249 192-237 (473)
399 PRK14970 DNA polymerase III su 82.1 36 0.00078 33.6 13.8 41 184-224 21-64 (367)
400 TIGR00959 ffh signal recogniti 82.1 16 0.00035 37.0 11.2 34 202-237 102-135 (428)
401 KOG0733|consensus 82.0 74 0.0016 33.7 16.6 46 199-251 545-591 (802)
402 PRK08006 replicative DNA helic 82.0 21 0.00045 36.7 12.2 53 196-250 221-273 (471)
403 TIGR01075 uvrD DNA helicase II 81.9 3.8 8.2E-05 44.6 7.2 67 180-252 4-72 (715)
404 PRK05636 replicative DNA helic 81.8 15 0.00033 38.0 11.2 113 202-316 268-389 (505)
405 PRK06067 flagellar accessory p 81.1 15 0.00033 33.6 10.1 47 202-251 28-74 (234)
406 COG3973 Superfamily I DNA and 81.1 3.9 8.5E-05 42.5 6.4 62 181-247 213-277 (747)
407 PRK11773 uvrD DNA-dependent he 81.1 4.7 0.0001 43.9 7.6 54 180-239 9-63 (721)
408 PRK06321 replicative DNA helic 81.0 20 0.00043 36.9 11.7 118 196-315 223-349 (472)
409 PF13191 AAA_16: AAA ATPase do 81.0 10 0.00022 32.8 8.6 45 182-226 5-51 (185)
410 TIGR02760 TraI_TIGR conjugativ 81.0 15 0.00032 44.6 12.1 131 179-342 1018-1151(1960)
411 TIGR01243 CDC48 AAA family ATP 80.9 7.9 0.00017 42.2 9.2 24 199-222 212-235 (733)
412 PF04851 ResIII: Type III rest 80.9 1.1 2.5E-05 38.8 2.3 43 34-76 2-47 (184)
413 PRK08699 DNA polymerase III su 80.8 19 0.00041 35.1 10.9 45 181-225 2-47 (325)
414 PRK05595 replicative DNA helic 80.5 16 0.00035 37.2 10.8 52 197-250 199-250 (444)
415 PRK12608 transcription termina 80.5 11 0.00023 37.5 9.0 38 187-225 122-159 (380)
416 TIGR02782 TrbB_P P-type conjug 80.4 4.7 0.0001 38.8 6.5 124 190-350 123-246 (299)
417 COG0541 Ffh Signal recognition 80.3 12 0.00026 37.6 9.2 56 203-261 104-159 (451)
418 PRK14721 flhF flagellar biosyn 80.2 23 0.00049 35.8 11.4 55 302-357 269-328 (420)
419 TIGR01241 FtsH_fam ATP-depende 79.9 5.2 0.00011 41.4 7.1 23 200-222 89-111 (495)
420 COG1474 CDC6 Cdc6-related prot 79.8 63 0.0014 32.0 14.3 47 180-226 20-69 (366)
421 PRK15429 formate hydrogenlyase 79.7 76 0.0016 34.4 16.2 37 197-236 397-433 (686)
422 KOG1133|consensus 79.4 1.4 3E-05 46.2 2.6 52 255-316 308-362 (821)
423 PRK07399 DNA polymerase III su 79.4 16 0.00034 35.5 9.8 41 185-225 9-52 (314)
424 TIGR00150 HI0065_YjeE ATPase, 79.0 4.8 0.0001 33.7 5.3 27 198-224 21-47 (133)
425 PF03796 DnaB_C: DnaB-like hel 78.9 12 0.00026 35.0 8.7 114 201-317 21-145 (259)
426 KOG1133|consensus 78.7 4.1 8.8E-05 43.0 5.6 48 178-225 13-61 (821)
427 TIGR01547 phage_term_2 phage t 78.6 7.8 0.00017 38.8 7.8 130 203-342 5-142 (396)
428 PRK14723 flhF flagellar biosyn 78.5 17 0.00036 39.6 10.4 22 203-224 189-210 (767)
429 PRK12726 flagellar biosynthesi 78.4 28 0.0006 34.8 11.1 45 203-250 210-258 (407)
430 COG3598 RepA RecA-family ATPas 78.3 15 0.00032 35.5 8.8 110 195-314 85-206 (402)
431 CHL00195 ycf46 Ycf46; Provisio 77.9 3.8 8.2E-05 42.3 5.3 37 200-242 260-296 (489)
432 KOG0744|consensus 77.6 17 0.00036 35.2 8.9 49 203-251 181-232 (423)
433 PRK12377 putative replication 77.5 17 0.00037 33.9 9.1 42 200-244 102-143 (248)
434 KOG0736|consensus 77.2 24 0.00052 38.1 10.7 23 201-223 707-729 (953)
435 PRK05564 DNA polymerase III su 77.2 17 0.00037 35.1 9.4 41 185-225 9-52 (313)
436 PF05970 PIF1: PIF1-like helic 76.5 6.7 0.00015 38.8 6.5 61 180-243 1-63 (364)
437 PRK09087 hypothetical protein; 76.3 22 0.00048 32.6 9.4 49 304-352 89-142 (226)
438 PF00437 T2SE: Type II/IV secr 75.9 4.6 0.0001 38.0 5.0 126 190-355 118-244 (270)
439 PF05127 Helicase_RecD: Helica 75.7 1.9 4.2E-05 37.9 2.1 33 302-340 90-123 (177)
440 PF05729 NACHT: NACHT domain 75.5 14 0.0003 31.2 7.5 26 202-227 3-28 (166)
441 COG3972 Superfamily I DNA and 75.4 16 0.00036 37.2 8.6 43 208-251 185-228 (660)
442 PRK05973 replicative DNA helic 75.4 7.3 0.00016 36.0 6.0 40 198-240 63-102 (237)
443 KOG0734|consensus 75.4 11 0.00024 38.8 7.5 87 200-287 338-468 (752)
444 PRK06995 flhF flagellar biosyn 75.2 21 0.00045 36.8 9.7 23 203-225 260-282 (484)
445 PRK13900 type IV secretion sys 74.5 7.2 0.00016 38.1 6.0 37 188-224 149-185 (332)
446 PRK10923 glnG nitrogen regulat 74.5 1.1E+02 0.0023 31.3 15.4 40 198-240 160-199 (469)
447 PF02456 Adeno_IVa2: Adenoviru 74.3 5.6 0.00012 38.0 4.9 112 202-328 90-222 (369)
448 PRK13894 conjugal transfer ATP 74.1 8.8 0.00019 37.3 6.5 131 179-350 131-261 (319)
449 PRK08939 primosomal protein Dn 74.1 15 0.00033 35.4 8.1 26 200-225 157-182 (306)
450 COG0305 DnaB Replicative DNA h 74.0 50 0.0011 33.5 11.8 125 192-318 189-322 (435)
451 PF01637 Arch_ATPase: Archaeal 73.9 29 0.00063 31.1 9.7 24 200-223 21-44 (234)
452 PRK10263 DNA translocase FtsK; 73.8 19 0.0004 41.3 9.5 41 200-240 1011-1052(1355)
453 TIGR02760 TraI_TIGR conjugativ 73.6 60 0.0013 39.7 14.2 144 177-345 426-571 (1960)
454 TIGR03499 FlhF flagellar biosy 73.5 15 0.00032 35.0 7.8 35 202-237 197-231 (282)
455 PRK10646 ADP-binding protein; 73.3 9.3 0.0002 32.8 5.7 35 202-236 31-65 (153)
456 KOG1807|consensus 72.5 7.8 0.00017 41.4 5.9 69 179-251 377-449 (1025)
457 TIGR01073 pcrA ATP-dependent D 72.3 5.8 0.00013 43.2 5.3 54 180-239 4-58 (726)
458 PRK07773 replicative DNA helic 72.1 27 0.00059 39.0 10.5 117 198-316 216-341 (886)
459 COG2842 Uncharacterized ATPase 72.0 24 0.00053 33.5 8.5 113 191-341 86-203 (297)
460 PF02367 UPF0079: Uncharacteri 71.8 2.6 5.6E-05 34.8 1.8 28 198-225 14-41 (123)
461 PRK10733 hflB ATP-dependent me 71.8 22 0.00047 38.2 9.3 22 200-221 186-207 (644)
462 COG4098 comFA Superfamily II D 71.4 15 0.00033 35.7 7.0 97 215-316 290-387 (441)
463 PRK09302 circadian clock prote 70.5 35 0.00076 35.4 10.4 47 202-251 276-322 (509)
464 COG1618 Predicted nucleotide k 70.4 12 0.00026 32.4 5.6 119 202-333 8-132 (179)
465 PHA00012 I assembly protein 70.4 12 0.00027 36.2 6.3 20 203-222 5-24 (361)
466 TIGR02655 circ_KaiC circadian 70.1 21 0.00045 36.9 8.5 48 202-252 266-313 (484)
467 KOG2028|consensus 69.2 28 0.00061 34.3 8.4 20 201-220 164-183 (554)
468 PF12846 AAA_10: AAA-like doma 69.0 11 0.00024 35.5 6.0 46 200-248 2-47 (304)
469 PF01580 FtsK_SpoIIIE: FtsK/Sp 67.8 10 0.00022 33.9 5.1 41 199-239 38-79 (205)
470 COG0467 RAD55 RecA-superfamily 67.5 10 0.00022 35.5 5.2 44 199-245 23-70 (260)
471 COG1199 DinG Rad3-related DNA 67.3 4.6 9.9E-05 43.4 3.1 44 32-75 12-55 (654)
472 KOG0738|consensus 67.3 6.3 0.00014 38.9 3.7 45 201-252 247-292 (491)
473 PRK13531 regulatory ATPase Rav 67.1 9.1 0.0002 39.3 5.0 39 185-223 25-63 (498)
474 TIGR00763 lon ATP-dependent pr 66.8 59 0.0013 35.8 11.6 23 201-223 349-371 (775)
475 KOG2543|consensus 66.6 1.4E+02 0.003 29.8 12.5 140 179-343 8-161 (438)
476 PRK06921 hypothetical protein; 66.5 30 0.00065 32.6 8.1 27 199-225 117-143 (266)
477 cd01129 PulE-GspE PulE/GspE Th 66.4 11 0.00024 35.4 5.2 43 180-224 63-105 (264)
478 TIGR02785 addA_Gpos recombinat 66.4 14 0.00031 42.8 7.0 60 181-246 2-61 (1232)
479 cd00983 recA RecA is a bacter 65.8 40 0.00088 32.8 8.9 39 202-243 58-96 (325)
480 PRK13851 type IV secretion sys 65.7 9.7 0.00021 37.4 4.7 128 190-353 153-281 (344)
481 PF02702 KdpD: Osmosensitive K 65.4 17 0.00038 32.6 5.8 24 202-225 8-31 (211)
482 PF06068 TIP49: TIP49 C-termin 65.4 19 0.00042 35.5 6.6 55 184-242 31-89 (398)
483 PF06745 KaiC: KaiC; InterPro 65.1 17 0.00038 33.0 6.2 49 202-252 22-70 (226)
484 PHA00350 putative assembly pro 64.9 13 0.00028 37.2 5.4 17 203-219 5-21 (399)
485 COG3265 GntK Gluconate kinase 64.9 24 0.00053 30.1 6.2 76 233-314 69-146 (161)
486 PF03237 Terminase_6: Terminas 64.7 27 0.00059 33.8 7.9 59 283-344 79-141 (384)
487 TIGR02858 spore_III_AA stage I 64.4 88 0.0019 29.6 10.8 24 200-223 112-135 (270)
488 TIGR03881 KaiC_arch_4 KaiC dom 63.9 20 0.00044 32.6 6.4 44 199-245 20-63 (229)
489 COG2805 PilT Tfp pilus assembl 63.9 26 0.00056 33.6 6.9 29 197-225 122-151 (353)
490 COG1702 PhoH Phosphate starvat 63.9 3.9 8.4E-05 39.6 1.6 42 302-345 243-284 (348)
491 CHL00095 clpC Clp protease ATP 63.8 18 0.0004 40.0 7.0 42 184-225 513-565 (821)
492 PF13892 DBINO: DNA-binding do 63.3 2.6 5.5E-05 35.3 0.2 24 78-101 111-134 (139)
493 PRK05917 DNA polymerase III su 63.1 96 0.0021 29.7 10.8 34 192-225 9-45 (290)
494 PRK11331 5-methylcytosine-spec 62.9 19 0.00042 36.6 6.3 37 188-224 183-219 (459)
495 TIGR03877 thermo_KaiC_1 KaiC d 62.8 22 0.00048 32.7 6.4 36 200-238 22-57 (237)
496 TIGR02012 tigrfam_recA protein 62.7 38 0.00081 32.9 8.1 40 202-244 58-97 (321)
497 cd01130 VirB11-like_ATPase Typ 62.6 19 0.0004 31.8 5.7 43 178-223 7-49 (186)
498 PF13479 AAA_24: AAA domain 62.2 19 0.00041 32.6 5.8 32 283-314 47-80 (213)
499 PF01935 DUF87: Domain of unkn 61.9 15 0.00032 33.5 5.1 39 200-240 24-62 (229)
500 COG1222 RPT1 ATP-dependent 26S 61.7 8.9 0.00019 37.5 3.5 42 199-246 185-226 (406)
No 1
>KOG0385|consensus
Probab=100.00 E-value=1e-69 Score=539.74 Aligned_cols=341 Identities=62% Similarity=1.045 Sum_probs=301.4
Q ss_pred CCcchhhhhhhhhcccccccccCCCCCCCCCCCCCccccCCCCCCcCCCCCcchhhhccCCCCcccccCCChhhhHHHHH
Q psy10683 77 PKIDRFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTPKAKGRPKKSLTKEKKNVDPSDHRHRMTEQEEDEELL 156 (429)
Q Consensus 77 ~~~~r~~~Ll~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (429)
....++..|+.+++.+.+|+..+......... ..... .++.++ ...+.......+++.++++++.+++
T Consensus 74 ~~~kr~e~Ll~~te~f~~f~~~~~~~~~~~~~------~~~~~---~~~k~~---~~~~~~~~~~~~~r~te~eed~e~~ 141 (971)
T KOG0385|consen 74 DQAKRFEKLLKQTELFQHFIQPKAQKIDTKPL------MELLR---PRKKND---AKKKESSSGDVRHRKTEQEEDEELL 141 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHccchhhcCccccc------chhcc---chhhcc---chhccccccccccccccccchHHHH
Confidence 44677889999999999999876644322111 00000 010110 1223344556778888998888888
Q ss_pred hcccc--CCCccccccCCCccccCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeE
Q psy10683 157 ANANT--EGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHI 234 (429)
Q Consensus 157 ~~~~~--~~~~~~~~~~~p~~~~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~L 234 (429)
..... .......+..+|.++.++.|||||++|++||+.+++++.+|||||+||+|||+|+|+++.++....+..||+|
T Consensus 142 ~~~~~e~~~~~~~~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfL 221 (971)
T KOG0385|consen 142 KEEEKEEETTVQNRFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFL 221 (971)
T ss_pred HHhhhhhhhhhhccccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeE
Confidence 75443 2333344566899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccc
Q psy10683 235 VIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRI 314 (429)
Q Consensus 235 IV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~ 314 (429)
||||.|++.||.+||++|+|++++++|+|.+..|....++....+.|||+||||+++.++.+.|.+++|.++||||||++
T Consensus 222 Vi~P~StL~NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRi 301 (971)
T KOG0385|consen 222 VIAPKSTLDNWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRI 301 (971)
T ss_pred EEeeHhhHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhh
Confidence 99999999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCChhHHHHHHHHhhhhhh
Q psy10683 315 KNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLL 394 (429)
Q Consensus 315 kn~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~l 394 (429)
||.+|.+++.++.+.+.+|+++||||+|||+.|||+||+||.|++|++.+.|..||......++...+.+||.+|+||++
T Consensus 302 KN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlL 381 (971)
T KOG0385|consen 302 KNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLL 381 (971)
T ss_pred cchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888888999999999999999
Q ss_pred hhchhHHhhcCCCceEEEEEEcCCHHHHHHHHHhC
Q psy10683 395 RRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKVC 429 (429)
Q Consensus 395 Rr~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y~~il 429 (429)
||.|.+|.+.||||.|.+++|.||+.|+++|.++|
T Consensus 382 RR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL 416 (971)
T KOG0385|consen 382 RRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAIL 416 (971)
T ss_pred HHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
No 2
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=3.4e-57 Score=483.68 Aligned_cols=321 Identities=56% Similarity=0.977 Sum_probs=277.2
Q ss_pred cchhhhhhhhhcccccccccCCCCCCCCCCCCCccccCCCCCCcCCCCCcchhhhccCCCCcccccCCChhhhHHHHHhc
Q psy10683 79 IDRFDYLLKQTEIFSHFMTNQGVKGGGPKTAAPASAAAPGTPKAKGRPKKSLTKEKKNVDPSDHRHRMTEQEEDEELLAN 158 (429)
Q Consensus 79 ~~r~~~Ll~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (429)
..++.+|+.++++|.||+.++..... + +. ......++++++.+++.+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~-~~------------~~~~~~~~~~~~~~ed~e~~~~ 146 (1033)
T PLN03142 96 KGRLKYLLQQTEIFAHFAKGDQSASA----------------K-KA------------KGRGRHASKLTEEEEDEEYLKE 146 (1033)
T ss_pred hhhHHHHHhccHHHHHHHhcCCcccc----------------c-cc------------cccCCccccccccccchHHHHh
Confidence 45788999999999999843221100 0 00 0001234456666666666655
Q ss_pred cccC--CCccccccCCCccccCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE
Q psy10683 159 ANTE--GKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI 236 (429)
Q Consensus 159 ~~~~--~~~~~~~~~~p~~~~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV 236 (429)
.... ......+..+|.++. +.|||||++|++||+..+.++.+|||||+||+|||+|+|+++.++....+..+|+|||
T Consensus 147 ~~~~~~~~~~~~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIV 225 (1033)
T PLN03142 147 EEDGLGGSGGTRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVV 225 (1033)
T ss_pred HHhhccccCCceeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4322 233455677898887 7999999999999999999999999999999999999999999988777888999999
Q ss_pred eccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccC
Q psy10683 237 VPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKN 316 (429)
Q Consensus 237 ~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn 316 (429)
||.+++.||.+||.+|+|.++++.++|+...+..........+.++|+||||+++.++...+..+.|++|||||||+++|
T Consensus 226 vP~SlL~nW~~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN 305 (1033)
T PLN03142 226 APKSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKN 305 (1033)
T ss_pred eChHHHHHHHHHHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCC
Confidence 99999999999999999999999999999887766655556678999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCChhHHHHHHHHhhhhhhhh
Q psy10683 317 EKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRR 396 (429)
Q Consensus 317 ~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~lRr 396 (429)
..++++++++.+.+.+||+|||||++|++.|||++++||.|+.|++...|..+|...........+.+|+.+|+||++||
T Consensus 306 ~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR 385 (1033)
T PLN03142 306 ENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRR 385 (1033)
T ss_pred HHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999988666667788999999999999999
Q ss_pred chhHHhhcCCCceEEEEEEcCCHHHHHHHHHhC
Q psy10683 397 LKSEVEKRLKPKKELKVYVGLSKMQREWYTKVC 429 (429)
Q Consensus 397 ~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y~~il 429 (429)
+|++|...|||+.+.+++|.||+.|+++|+.++
T Consensus 386 ~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll 418 (1033)
T PLN03142 386 LKSDVEKGLPPKKETILKVGMSQMQKQYYKALL 418 (1033)
T ss_pred hHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999864
No 3
>KOG0388|consensus
Probab=100.00 E-value=3.6e-58 Score=452.54 Aligned_cols=261 Identities=40% Similarity=0.772 Sum_probs=243.8
Q ss_pred ccccCCCccccCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHH
Q psy10683 167 VSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWM 246 (429)
Q Consensus 167 ~~~~~~p~~~~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~ 246 (429)
.....+|.+++ +.|+.||+.|++||..+|+.|.+|||||+||+|||+|+|++++++.+..+..||+|||+|.++++||.
T Consensus 555 t~tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWa 633 (1185)
T KOG0388|consen 555 TRTVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWA 633 (1185)
T ss_pred eeeccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHH
Confidence 34456777764 69999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCceEEEeCChhhHHHHHHhhc------CCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhH
Q psy10683 247 NEFKKWCPTLRAICLIGDQDARNAMIRDVM------MPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSK 320 (429)
Q Consensus 247 ~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~ 320 (429)
+||.+|+|+++++.|.|+...|..+...+. ....|+|+||||+++..+...|.++.|.++|+|||+.||+..|.
T Consensus 634 qEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~ 713 (1185)
T KOG0388|consen 634 QEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSS 713 (1185)
T ss_pred HHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhh
Confidence 999999999999999999998877655442 34678999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccc-------cCCChhHHHHHHHHhhhhh
Q psy10683 321 LSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEE-------FMGDHSIIERLHSVLKPFL 393 (429)
Q Consensus 321 ~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~-------~~~~~~~~~~L~~~l~~~~ 393 (429)
.++.+..+++++|++||||||||+..|||+||+|+.|..|.+..+|.+||+..+ ...+...+.+||.+|+|||
T Consensus 714 RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFM 793 (1185)
T KOG0388|consen 714 RWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFM 793 (1185)
T ss_pred HHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHH
Confidence 999999999999999999999999999999999999999999999999998753 3446788999999999999
Q ss_pred hhhchhHHhhcCCCceEEEEEEcCCHHHHHHHHHh
Q psy10683 394 LRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428 (429)
Q Consensus 394 lRr~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y~~i 428 (429)
+||.|++|..+|..|+++.|+|.||..|+.+|+.|
T Consensus 794 LRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~i 828 (1185)
T KOG0388|consen 794 LRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEI 828 (1185)
T ss_pred HHHHHHHHHHHhccceEEEEEechhHHHHHHHHHH
Confidence 99999999999999999999999999999999876
No 4
>KOG0391|consensus
Probab=100.00 E-value=4.3e-57 Score=462.21 Aligned_cols=254 Identities=47% Similarity=0.837 Sum_probs=244.0
Q ss_pred ccCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCC
Q psy10683 176 IKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPT 255 (429)
Q Consensus 176 ~~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~ 255 (429)
+-.|.||.||..|++||..+|+++.|||||||||+|||+|+|+++++|....+.+||+|||||.+++-||.-||++|||+
T Consensus 611 LLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcPg 690 (1958)
T KOG0391|consen 611 LLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCPG 690 (1958)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCCc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEE
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLL 335 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~ 335 (429)
++++.|+|+...|+.....|..++.|+|+||||..+..+...|++..|.++||||||+|||..++.|+++..+++.+|++
T Consensus 691 lKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLL 770 (1958)
T KOG0391|consen 691 LKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLL 770 (1958)
T ss_pred ceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhccccc-------CCChhHHHHHHHHhhhhhhhhchhHHhhcCCCc
Q psy10683 336 LTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEF-------MGDHSIIERLHSVLKPFLLRRLKSEVEKRLKPK 408 (429)
Q Consensus 336 lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~-------~~~~~~~~~L~~~l~~~~lRr~k~~v~~~LP~~ 408 (429)
|||||++|++.|||+|++||.|..|.+.+.|+.||+++-. ..+...+.+||++|+||+|||+|.||+++||.|
T Consensus 771 LtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQlpkK 850 (1958)
T KOG0391|consen 771 LTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQLPKK 850 (1958)
T ss_pred ecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999999999998732 223567889999999999999999999999999
Q ss_pred eEEEEEEcCCHHHHHHHHHhC
Q psy10683 409 KELKVYVGLSKMQREWYTKVC 429 (429)
Q Consensus 409 ~e~~v~v~~s~~Q~~~Y~~il 429 (429)
.|++|+|.||..|+.+|++++
T Consensus 851 yEHvv~CrLSkRQR~LYDDfm 871 (1958)
T KOG0391|consen 851 YEHVVKCRLSKRQRALYDDFM 871 (1958)
T ss_pred hhhheeeehhhhHHHHHHHHh
Confidence 999999999999999999874
No 5
>KOG0387|consensus
Probab=100.00 E-value=8.3e-56 Score=442.61 Aligned_cols=251 Identities=33% Similarity=0.655 Sum_probs=227.0
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCce
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRA 258 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~ 258 (429)
..|.+||++||+||+.++..+.||||+||||||||+|+|+|++.+.......+|+|||||.++++||.+||.+|+|.+++
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcceEE
Confidence 37999999999999999999999999999999999999999999998767779999999999999999999999999999
Q ss_pred EEEeCChhh-H---------HHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc
Q psy10683 259 ICLIGDQDA-R---------NAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF 328 (429)
Q Consensus 259 ~~~~g~~~~-~---------~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l 328 (429)
.+++++... + ............-.|+||||+.++.....+..+.|+++|+||+|+|+|++++++.+|+++
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~islackki 363 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKISLACKKI 363 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHHHHHHhc
Confidence 999997652 1 111111111223459999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCCh------------hHHHHHHHHhhhhhhhh
Q psy10683 329 KTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDH------------SIIERLHSVLKPFLLRR 396 (429)
Q Consensus 329 ~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~------------~~~~~L~~~l~~~~lRr 396 (429)
++.+|++||||||||++.|||+|++|+.|+.+++...|.+.|..++..|.+ ..+-.|+.+++||+|||
T Consensus 364 ~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR 443 (923)
T KOG0387|consen 364 RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRR 443 (923)
T ss_pred cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999988877653 34556999999999999
Q ss_pred chhHHhh-cCCCceEEEEEEcCCHHHHHHHHHhC
Q psy10683 397 LKSEVEK-RLKPKKELKVYVGLSKMQREWYTKVC 429 (429)
Q Consensus 397 ~k~~v~~-~LP~~~e~~v~v~~s~~Q~~~Y~~il 429 (429)
+|+||.. .||.|.|++++|.||+.|+++|+++|
T Consensus 444 ~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl 477 (923)
T KOG0387|consen 444 MKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFL 477 (923)
T ss_pred HHHHhhhccCCCccceEEEEeccHHHHHHHHHHh
Confidence 9999999 99999999999999999999999875
No 6
>KOG0389|consensus
Probab=100.00 E-value=5.7e-54 Score=428.90 Aligned_cols=258 Identities=43% Similarity=0.787 Sum_probs=231.6
Q ss_pred cCCCccc-cCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHH
Q psy10683 170 ENSPFYI-KGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 170 ~~~p~~~-~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e 248 (429)
..+|..+ .+.+|+|||+-||+||.-++.++-+||||||||+|||+|+|+|+++|.+ .+..+|+|||||+|++.||.+|
T Consensus 388 ~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq-~g~~gpHLVVvPsSTleNWlrE 466 (941)
T KOG0389|consen 388 TEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ-IGNPGPHLVVVPSSTLENWLRE 466 (941)
T ss_pred ccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH-cCCCCCcEEEecchhHHHHHHH
Confidence 3355554 4679999999999999999999999999999999999999999999998 5559999999999999999999
Q ss_pred HHhhcCCCceEEEeCChhhHHHHHHhhcC-CCCccEEEcchHHHH---HHhhhhhccCceEEEecCcccccCchhHHHHH
Q psy10683 249 FKKWCPTLRAICLIGDQDARNAMIRDVMM-PGEWDVCITSYEMCI---RERGVFKKFNWRYLVIDEAHRIKNEKSKLSEI 324 (429)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~dvvitty~~l~---~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~ 324 (429)
|.+|||.+++..|+|+...|..+...... ...|||++|||..+. .+...|+...|++||.||+|.+||..|.+++.
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~ 546 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKH 546 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHH
Confidence 99999999999999999999887666543 248999999999886 45678999999999999999999999999999
Q ss_pred HHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCCh-HHHHhhhccccc-CC-------ChhHHHHHHHHhhhhhhh
Q psy10683 325 VREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSS-DDFDSWFNTEEF-MG-------DHSIIERLHSVLKPFLLR 395 (429)
Q Consensus 325 ~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~-~~f~~~~~~~~~-~~-------~~~~~~~L~~~l~~~~lR 395 (429)
+..+++.+|++|||||+||++.||++||.|+.|..|.+. +.++..|..... .+ .+..+.+-..++.||+||
T Consensus 547 LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 547 LMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred hccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999999999999999864 577777764332 11 134688899999999999
Q ss_pred hchhHHhhcCCCceEEEEEEcCCHHHHHHHHHh
Q psy10683 396 RLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428 (429)
Q Consensus 396 r~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y~~i 428 (429)
|.|++|.++||||..++.+|+|++.|+++|..+
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~ 659 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDEL 659 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHH
Confidence 999999999999999999999999999999876
No 7
>KOG0384|consensus
Probab=100.00 E-value=1.4e-53 Score=442.59 Aligned_cols=258 Identities=44% Similarity=0.806 Sum_probs=242.3
Q ss_pred ccccCCCccccCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHH
Q psy10683 167 VSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWM 246 (429)
Q Consensus 167 ~~~~~~p~~~~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~ 246 (429)
..+..+|.++.|..||+||++|++||+..|.++.+||||||||||||+|+++++.++.......||+|||+|.+.+.+|.
T Consensus 357 ~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~ 436 (1373)
T KOG0384|consen 357 RKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWE 436 (1373)
T ss_pred HHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHhhcCCCceEEEeCChhhHHHHHHhhcCC------CCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhH
Q psy10683 247 NEFKKWCPTLRAICLIGDQDARNAMIRDVMMP------GEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSK 320 (429)
Q Consensus 247 ~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~ 320 (429)
+||..|+ +.++++|+|+..+|.-+..-.... -+|+++||||+++.++...|..++|.+++|||||+++|..+.
T Consensus 437 ~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 437 REFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred HHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHH
Confidence 9999999 999999999998887554332221 269999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCChhHHHHHHHHhhhhhhhhchhH
Q psy10683 321 LSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRRLKSE 400 (429)
Q Consensus 321 ~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~lRr~k~~ 400 (429)
++..+..+...+|+++||||+||+++|||+|++||.|+-|.++++|...|. ......+..|+.+|+|||+||.|+|
T Consensus 516 l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~----~~~e~~~~~L~~~L~P~~lRr~kkd 591 (1373)
T KOG0384|consen 516 LYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFD----EETEEQVRKLQQILKPFLLRRLKKD 591 (1373)
T ss_pred HHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhc----chhHHHHHHHHHHhhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999883 5567788999999999999999999
Q ss_pred HhhcCCCceEEEEEEcCCHHHHHHHHHhC
Q psy10683 401 VEKRLKPKKELKVYVGLSKMQREWYTKVC 429 (429)
Q Consensus 401 v~~~LP~~~e~~v~v~~s~~Q~~~Y~~il 429 (429)
|.+.||+|.|.++.|+||..|+++|+.||
T Consensus 592 vekslp~k~E~IlrVels~lQk~yYk~IL 620 (1373)
T KOG0384|consen 592 VEKSLPPKEETILRVELSDLQKQYYKAIL 620 (1373)
T ss_pred hccCCCCCcceEEEeehhHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 8
>KOG0386|consensus
Probab=100.00 E-value=4.9e-54 Score=438.41 Aligned_cols=261 Identities=48% Similarity=0.895 Sum_probs=246.7
Q ss_pred ccccCCCccccCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHH
Q psy10683 167 VSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWM 246 (429)
Q Consensus 167 ~~~~~~p~~~~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~ 246 (429)
.....+|+.+.||.|++||+.|+.||..++.++.+||||||||+|||+|+|+++.++.+..+..+|+|||||.++|.||.
T Consensus 381 E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~ 460 (1157)
T KOG0386|consen 381 ENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWS 460 (1157)
T ss_pred hccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCch
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHH
Q psy10683 247 NEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR 326 (429)
Q Consensus 247 ~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~ 326 (429)
.||.+|.|++..+.|.|....|..+...... ++|+|++|||+.+.++...|.++.|.++||||+|+++|..++++..+.
T Consensus 461 ~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~-gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~ 539 (1157)
T KOG0386|consen 461 SEFPKWAPSVQKIQYKGTPQQRSGLTKQQRH-GKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLN 539 (1157)
T ss_pred hhccccccceeeeeeeCCHHHHhhHHHHHhc-ccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhh
Confidence 9999999999999999999999887776665 999999999999999999999999999999999999999999999998
Q ss_pred -hccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCC----------hhHHHHHHHHhhhhhhh
Q psy10683 327 -EFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGD----------HSIIERLHSVLKPFLLR 395 (429)
Q Consensus 327 -~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~----------~~~~~~L~~~l~~~~lR 395 (429)
...+.+|++|||||+||++.|||+||+|+.|.+|.+...|..||+.|..... --.+.+||.+|+||++|
T Consensus 540 t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLR 619 (1157)
T KOG0386|consen 540 THYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLR 619 (1157)
T ss_pred ccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHH
Confidence 6799999999999999999999999999999999999999999988754332 23678999999999999
Q ss_pred hchhHHhhcCCCceEEEEEEcCCHHHHHHHHHh
Q psy10683 396 RLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428 (429)
Q Consensus 396 r~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y~~i 428 (429)
|.|++|...||.|++.++.|.||..|+.+|..+
T Consensus 620 RlKkeVE~~LPdKve~viKC~mSalQq~lY~~m 652 (1157)
T KOG0386|consen 620 RLKKEVEQELPDKVEDVIKCDMSALQQSLYKQM 652 (1157)
T ss_pred hhhHHHhhhCchhhhHhhheehhhhhHhhhHHH
Confidence 999999999999999999999999999999876
No 9
>KOG0392|consensus
Probab=100.00 E-value=3.6e-51 Score=422.86 Aligned_cols=247 Identities=36% Similarity=0.671 Sum_probs=226.1
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcc------cCCCeEEEeccchHHHHHHHHHhh
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRN------IAGPHIVIVPKSTLLNWMNEFKKW 252 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~------~~~~~LIV~P~~ll~qW~~e~~~~ 252 (429)
..||.||.+||+|+..+...+.+|||+|+||+|||+|++++++.=...+. ...|.|||||+++..+|+.|+.++
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 68999999999999998888999999999999999999999875433221 345789999999999999999999
Q ss_pred cCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCc
Q psy10683 253 CPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTN 332 (429)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~ 332 (429)
+|-+++..|.|....|...+.+. .+.+|+||+|+.++++...+.++.|.++|+||+|-+||..++++++++.+.+.+
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~---~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~h 1130 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQY---KNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANH 1130 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhc---cccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHHHHHhhcc
Confidence 99999999999999887765543 467899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccC------------CChhHHHHHHHHhhhhhhhhchhH
Q psy10683 333 RLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFM------------GDHSIIERLHSVLKPFLLRRLKSE 400 (429)
Q Consensus 333 r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~------------~~~~~~~~L~~~l~~~~lRr~k~~ 400 (429)
|++|||||+|||+.|||+||+||.|+++|+.+.|.+.|..|+.. ...-+++.||+.+-||++||+|+|
T Consensus 1131 RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKed 1210 (1549)
T KOG0392|consen 1131 RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKED 1210 (1549)
T ss_pred eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877432 223578899999999999999999
Q ss_pred HhhcCCCceEEEEEEcCCHHHHHHHHHh
Q psy10683 401 VEKRLKPKKELKVYVGLSKMQREWYTKV 428 (429)
Q Consensus 401 v~~~LP~~~e~~v~v~~s~~Q~~~Y~~i 428 (429)
|.++||||..+..||+|||.|+++|+.+
T Consensus 1211 VL~DLPpKIIQDyyCeLs~lQ~kLY~df 1238 (1549)
T KOG0392|consen 1211 VLKDLPPKIIQDYYCELSPLQKKLYRDF 1238 (1549)
T ss_pred HHhhCChhhhhheeeccCHHHHHHHHHH
Confidence 9999999999999999999999999975
No 10
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=8.3e-44 Score=342.84 Aligned_cols=242 Identities=39% Similarity=0.678 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHH---------hcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccC--CCeEEEeccchHHHHHHHHHhh
Q psy10683 184 YQVRGLNWMISLY---------ENGINGILADEMGLGKTLQTISLLGYMKHYRNIA--GPHIVIVPKSTLLNWMNEFKKW 252 (429)
Q Consensus 184 ~Q~~~v~~l~~~~---------~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~--~~~LIV~P~~ll~qW~~e~~~~ 252 (429)
||++||.||+..+ ....||||||+||+|||+++++++.++....... +++|||||.+++.||..|+.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7778899999999999999999999876643333 3699999999999999999999
Q ss_pred c-C-CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHH-----HHhhhhhccCceEEEecCcccccCchhHHHHHH
Q psy10683 253 C-P-TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI-----RERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIV 325 (429)
Q Consensus 253 ~-~-~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~-----~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~ 325 (429)
+ + +.+++++.|....+ .........++++|+||+.+. .....+...+|++||+||+|+++|..+..++++
T Consensus 81 ~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l 157 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERR---RLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKAL 157 (299)
T ss_dssp SGT-TS-EEEESSSCHHH---HTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHH
T ss_pred cccccccccccccccccc---cccccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccc
Confidence 9 4 67888888776222 223334567899999999999 667778888999999999999999999999999
Q ss_pred HhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCChhHHHHHHHHhhhhhhhhchhHHhhcC
Q psy10683 326 REFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRRLKSEVEKRL 405 (429)
Q Consensus 326 ~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~lRr~k~~v~~~L 405 (429)
..+.+.++|+|||||++|++.|+|++++||.|+.+.+...|.+.|..+..........+|+.+++++++||+++++...|
T Consensus 158 ~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~~~~l 237 (299)
T PF00176_consen 158 RKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDVEKEL 237 (299)
T ss_dssp HCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGGCTTS
T ss_pred cccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccccccccccchhhhhhhcccccccC
Confidence 99999999999999999999999999999999999999999999876644555678899999999999999999998889
Q ss_pred CCceEEEEEEcCCHHHHHHHHHh
Q psy10683 406 KPKKELKVYVGLSKMQREWYTKV 428 (429)
Q Consensus 406 P~~~e~~v~v~~s~~Q~~~Y~~i 428 (429)
|++.+.++.|+||+.|+++|+.+
T Consensus 238 p~~~~~~~~~~ls~~q~~~Y~~~ 260 (299)
T PF00176_consen 238 PPKIEHVINVELSPEQRELYNEL 260 (299)
T ss_dssp TCEEEEEEEEGG-HHHHHHHHHH
T ss_pred CceEEEEEEeCCCHHHHHHHHHH
Confidence 99999999999999999999975
No 11
>KOG0390|consensus
Probab=100.00 E-value=3.3e-42 Score=353.44 Aligned_cols=252 Identities=30% Similarity=0.424 Sum_probs=217.1
Q ss_pred CCCChHHHHHHHHHHHHHHh------cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccC----CCeEEEeccchHHHHHH
Q psy10683 178 GGEMRDYQVRGLNWMISLYE------NGINGILADEMGLGKTLQTISLLGYMKHYRNIA----GPHIVIVPKSTLLNWMN 247 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~------~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~----~~~LIV~P~~ll~qW~~ 247 (429)
...|||||++|+.||+..+. ...|||+||+||+|||+++|+++..+......+ ...|||||.+++.+|.+
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkk 315 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKK 315 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHH
Confidence 35899999999999998764 345799999999999999999999888755542 45599999999999999
Q ss_pred HHHhhcC--CCceEEEeCChhhHHHHHHhh----cCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHH
Q psy10683 248 EFKKWCP--TLRAICLIGDQDARNAMIRDV----MMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKL 321 (429)
Q Consensus 248 e~~~~~~--~~~~~~~~g~~~~~~~~~~~~----~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~ 321 (429)
||.+|.. .+..+.+++..+..-...... ...-...|.+.+|++++.+...+....++++|+||+|+++|..+.+
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~ 395 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLT 395 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHH
Confidence 9999995 577777888776411111111 1112346999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCC-----------hhHHHHHHHHhh
Q psy10683 322 SEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGD-----------HSIIERLHSVLK 390 (429)
Q Consensus 322 ~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~-----------~~~~~~L~~~l~ 390 (429)
++++.++.+++|++|||||+||++.|+|++|+|.+|+.+++...|...|..+...+. ...+.+|..++.
T Consensus 396 ~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~ 475 (776)
T KOG0390|consen 396 LKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTN 475 (776)
T ss_pred HHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987654432 234778999999
Q ss_pred hhhhhhchhHHhhcCCCceEEEEEEcCCHHHHHHHHHhC
Q psy10683 391 PFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKVC 429 (429)
Q Consensus 391 ~~~lRr~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y~~il 429 (429)
.|++||+.+...+.||++.+++|.|.+|+.|+++|..++
T Consensus 476 ~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~ 514 (776)
T KOG0390|consen 476 KFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLL 514 (776)
T ss_pred hheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999874
No 12
>KOG1015|consensus
Probab=100.00 E-value=9.3e-43 Score=352.05 Aligned_cols=249 Identities=32% Similarity=0.443 Sum_probs=211.3
Q ss_pred CCChHHHHHHHHHHHHHHh---------cCCCeEeecCCCCCHHHHHHHHHHHHhh-hcccCCCeEEEeccchHHHHHHH
Q psy10683 179 GEMRDYQVRGLNWMISLYE---------NGINGILADEMGLGKTLQTISLLGYMKH-YRNIAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~---------~~~~~ilad~~GlGKT~~~i~~~~~l~~-~~~~~~~~LIV~P~~ll~qW~~e 248 (429)
..|+|||..||+||+.... .|.||||||.||||||+|+++|+..+.. ..-..+++|||||.+++.||..|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 3799999999999987542 4668999999999999999999976544 34556788999999999999999
Q ss_pred HHhhcCCC------ceEEEe--CChhhHHHHHHhhcCCCCccEEEcchHHHHHHh---------------hhhhccCceE
Q psy10683 249 FKKWCPTL------RAICLI--GDQDARNAMIRDVMMPGEWDVCITSYEMCIRER---------------GVFKKFNWRY 305 (429)
Q Consensus 249 ~~~~~~~~------~~~~~~--g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~---------------~~l~~~~~~~ 305 (429)
|.+|.+++ .|..+. .....|...+..|...+ -|+|+.|++++.-. ..+..-.+++
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~g--gVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~ 824 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDG--GVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDF 824 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHHHHHhcC--CEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCe
Confidence 99999853 222222 22344555566666555 59999999997431 2244457899
Q ss_pred EEecCcccccCchhHHHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCCh------
Q psy10683 306 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDH------ 379 (429)
Q Consensus 306 vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~------ 379 (429)
||+||||.++|..+.+++++.++.+++||+|||||+|||+.|+|.+++|+.|+++|+..+|...|.+|+..|+.
T Consensus 825 vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~~ 904 (1567)
T KOG1015|consen 825 VVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTMV 904 (1567)
T ss_pred EEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887752
Q ss_pred ------hHHHHHHHHhhhhhhhhchhHHhhcCCCceEEEEEEcCCHHHHHHHHHhC
Q psy10683 380 ------SIIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKVC 429 (429)
Q Consensus 380 ------~~~~~L~~~l~~~~lRr~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y~~il 429 (429)
...+-|+..|+.|+-|+....+.+.||||++++|.|.||+.|+.+|...|
T Consensus 905 DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL 960 (1567)
T KOG1015|consen 905 DVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYL 960 (1567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHH
Confidence 34456999999999999999999999999999999999999999998764
No 13
>KOG4439|consensus
Probab=100.00 E-value=3e-43 Score=347.97 Aligned_cols=252 Identities=29% Similarity=0.440 Sum_probs=213.5
Q ss_pred cccCCCccccCCCChHHHHHHHHHHHHHHh-cCCCeEeecCCCCCHHHHHHHHHHHHhhhc-------ccCCCeEEEecc
Q psy10683 168 SFENSPFYIKGGEMRDYQVRGLNWMISLYE-NGINGILADEMGLGKTLQTISLLGYMKHYR-------NIAGPHIVIVPK 239 (429)
Q Consensus 168 ~~~~~p~~~~~~~Lr~~Q~~~v~~l~~~~~-~~~~~ilad~~GlGKT~~~i~~~~~l~~~~-------~~~~~~LIV~P~ 239 (429)
...+.|..+ ...|.|||..|+.||..+.. .+.||||||+||+|||+++|+++..-.... ....+||||||.
T Consensus 314 ~lte~P~g~-~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa 392 (901)
T KOG4439|consen 314 DLTETPDGL-KVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA 392 (901)
T ss_pred cccCCCCcc-eeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH
Confidence 344555544 36899999999999998775 456899999999999999999986543321 122369999999
Q ss_pred chHHHHHHHHHhhcC--CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHH----------HhhhhhccCceEEE
Q psy10683 240 STLLNWMNEFKKWCP--TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIR----------ERGVFKKFNWRYLV 307 (429)
Q Consensus 240 ~ll~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~----------~~~~l~~~~~~~vI 307 (429)
++++||..|+++-.. -+.|++|+|... |. .......+||||||||..+.. +...|..+.|.+||
T Consensus 393 Sli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~---i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVI 468 (901)
T KOG4439|consen 393 SLIHQWEAEVARRLEQNALSVYLYHGPNK-RE---ISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVI 468 (901)
T ss_pred HHHHHHHHHHHHHHhhcceEEEEecCCcc-cc---CCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhh
Confidence 999999999998773 488999999874 21 122334689999999999876 23568889999999
Q ss_pred ecCcccccCchhHHHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCChhHHHHHHH
Q psy10683 308 IDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHS 387 (429)
Q Consensus 308 iDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~ 387 (429)
+||||.++|..++.+.+++.|.+..|||||||||+|++-|+|+|+.||+-.+|++...|++++..+...+ ..+|.=
T Consensus 469 LDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g----~~rlnl 544 (901)
T KOG4439|consen 469 LDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG----ANRLNL 544 (901)
T ss_pred hhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc----hhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998665443 367788
Q ss_pred HhhhhhhhhchhHHhh-----cCCCceEEEEEEcCCHHHHHHHHHh
Q psy10683 388 VLKPFLLRRLKSEVEK-----RLKPKKELKVYVGLSKMQREWYTKV 428 (429)
Q Consensus 388 ~l~~~~lRr~k~~v~~-----~LP~~~e~~v~v~~s~~Q~~~Y~~i 428 (429)
+.++.|+||||+.... .||++...++.++||..|...|+-+
T Consensus 545 l~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~ 590 (901)
T KOG4439|consen 545 LTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIM 590 (901)
T ss_pred hhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHH
Confidence 8899999999999877 6999999999999999999999865
No 14
>KOG1002|consensus
Probab=100.00 E-value=1.3e-39 Score=311.01 Aligned_cols=253 Identities=30% Similarity=0.481 Sum_probs=201.0
Q ss_pred cccccCCCccccCCCChHHHHHHHHHHHHHHh-cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH
Q psy10683 166 IVSFENSPFYIKGGEMRDYQVRGLNWMISLYE-NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN 244 (429)
Q Consensus 166 ~~~~~~~p~~~~~~~Lr~~Q~~~v~~l~~~~~-~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q 244 (429)
+..-.++|.-+ -..|-|||++++.|+..+.. .-.|||||||||+|||+|+|+++.. .....|+|||||...+.|
T Consensus 171 i~e~aeqP~dl-ii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQ 245 (791)
T KOG1002|consen 171 IAERAEQPDDL-IIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQ 245 (791)
T ss_pred hhhcccCcccc-eecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHH
Confidence 33344555543 25789999999999998887 4568999999999999999998854 334568999999999999
Q ss_pred HHHHHHhhcC-CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHH-----------------hhhhhccCceEE
Q psy10683 245 WMNEFKKWCP-TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRE-----------------RGVFKKFNWRYL 306 (429)
Q Consensus 245 W~~e~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~-----------------~~~l~~~~~~~v 306 (429)
|.+||.+|+. .+++++|+|.+...+ .....+||||+|||..+-+. .+.|..+.|.+|
T Consensus 246 W~nEI~~~T~gslkv~~YhG~~R~~n-----ikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~Ri 320 (791)
T KOG1002|consen 246 WKNEIERHTSGSLKVYIYHGAKRDKN-----IKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRI 320 (791)
T ss_pred HHHHHHHhccCceEEEEEecccccCC-----HHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeee
Confidence 9999999994 589999999776432 23346899999999987543 245778899999
Q ss_pred EecCcccccCchhHHHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCCh---------H--HH---------
Q psy10683 307 VIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSS---------D--DF--------- 366 (429)
Q Consensus 307 IiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~---------~--~f--------- 366 (429)
|+||||.+|+..+..++++..|.+.+||||||||+||++.|||+|++||+.++|..+ . .|
T Consensus 321 IlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c 400 (791)
T KOG1002|consen 321 ILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHC 400 (791)
T ss_pred ehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcc
Confidence 999999999999999999999999999999999999999999999999999987532 0 11
Q ss_pred -----------Hhhhccccc-CC----ChhHHHHHHHHhhhhhhhhchhHHhh--cCCCceEEEEEEcCCHHHHHHHHHh
Q psy10683 367 -----------DSWFNTEEF-MG----DHSIIERLHSVLKPFLLRRLKSEVEK--RLKPKKELKVYVGLSKMQREWYTKV 428 (429)
Q Consensus 367 -----------~~~~~~~~~-~~----~~~~~~~L~~~l~~~~lRr~k~~v~~--~LP~~~e~~v~v~~s~~Q~~~Y~~i 428 (429)
....-.++. .| ........+.+|+.+|+||||-+-.+ .|||....+..=-++.+++.+|+.+
T Consensus 401 ~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSL 480 (791)
T KOG1002|consen 401 SHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESL 480 (791)
T ss_pred cchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHH
Confidence 000011111 11 12344578999999999999954333 3999999999999999999999975
No 15
>KOG1016|consensus
Probab=100.00 E-value=3.6e-37 Score=306.39 Aligned_cols=247 Identities=34% Similarity=0.533 Sum_probs=211.4
Q ss_pred CCChHHHHHHHHHHHHHH---------hcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHH
Q psy10683 179 GEMRDYQVRGLNWMISLY---------ENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~---------~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~ 249 (429)
..++|||+-||+||+... ..|.|||||+.||+|||+|+|+|+..+.+ .-..+.+|+|+|-+.+.||..||
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflR-hT~AKtVL~ivPiNTlQNWlsEf 331 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLR-HTKAKTVLVIVPINTLQNWLSEF 331 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhh-cCccceEEEEEehHHHHHHHHHh
Confidence 368999999999997532 24678999999999999999999988776 56678999999999999999999
Q ss_pred HhhcCC-----------CceEEEeCC---hhhHHHHHHhhcCCCCccEEEcchHHHHHH---------------------
Q psy10683 250 KKWCPT-----------LRAICLIGD---QDARNAMIRDVMMPGEWDVCITSYEMCIRE--------------------- 294 (429)
Q Consensus 250 ~~~~~~-----------~~~~~~~g~---~~~~~~~~~~~~~~~~~dvvitty~~l~~~--------------------- 294 (429)
..|.|. +.+.++... -+.|.+...++...+. |+++.|++++--
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GG--VlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~ 409 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGG--VLLVGYEMFRLLILKTLPKKGRPKKTLKRISSG 409 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCC--EEEehHHHHHHHHHhcccccCCccccccccCCc
Confidence 999974 334444332 3567777777776555 999999998632
Q ss_pred -----------------hhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCC
Q psy10683 295 -----------------RGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLP 357 (429)
Q Consensus 295 -----------------~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p 357 (429)
.+.|..-.+|+||+||+|+|||..+.++.+++.+++++|++|||-|+||++-|+|.+++|++|
T Consensus 410 ~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP 489 (1387)
T KOG1016|consen 410 FIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRP 489 (1387)
T ss_pred ccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccc
Confidence 112333368999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHhhhcccccCCCh------------hHHHHHHHHhhhhhhhhchhHHhhcCCCceEEEEEEcCCHHHHHHH
Q psy10683 358 DIFSSSDDFDSWFNTEEFMGDH------------SIIERLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425 (429)
Q Consensus 358 ~~~~~~~~f~~~~~~~~~~~~~------------~~~~~L~~~l~~~~lRr~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y 425 (429)
++++...+|...|.+|+..|+- -...-|+.+|..|+-||+-..+...||.+.|+++-|+||..|+++|
T Consensus 490 ~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~LY 569 (1387)
T KOG1016|consen 490 KYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQLY 569 (1387)
T ss_pred cccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHHH
Confidence 9999999999999999877641 2345699999999999999999999999999999999999999999
Q ss_pred HHh
Q psy10683 426 TKV 428 (429)
Q Consensus 426 ~~i 428 (429)
+.+
T Consensus 570 ~~F 572 (1387)
T KOG1016|consen 570 RNF 572 (1387)
T ss_pred HHH
Confidence 875
No 16
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-36 Score=334.33 Aligned_cols=253 Identities=43% Similarity=0.690 Sum_probs=222.3
Q ss_pred ccCCCChHHHHHHHHHHH-HHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhccc-CCCeEEEeccchHHHHHHHHHhhc
Q psy10683 176 IKGGEMRDYQVRGLNWMI-SLYENGINGILADEMGLGKTLQTISLLGYMKHYRNI-AGPHIVIVPKSTLLNWMNEFKKWC 253 (429)
Q Consensus 176 ~~~~~Lr~~Q~~~v~~l~-~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~-~~~~LIV~P~~ll~qW~~e~~~~~ 253 (429)
.....|++||.+|++|+. .....+.+|++||+||+|||+|+++++.++...... .+|.|||||.+++.||.+|+.+|.
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~ 413 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFA 413 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhC
Confidence 334789999999999999 788889999999999999999999999875554444 589999999999999999999999
Q ss_pred CCCc-eEEEeCChhh---HHHHHHhhcCCC---CccEEEcchHHHHH---HhhhhhccCceEEEecCcccccCchhHHHH
Q psy10683 254 PTLR-AICLIGDQDA---RNAMIRDVMMPG---EWDVCITSYEMCIR---ERGVFKKFNWRYLVIDEAHRIKNEKSKLSE 323 (429)
Q Consensus 254 ~~~~-~~~~~g~~~~---~~~~~~~~~~~~---~~dvvitty~~l~~---~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~ 323 (429)
|.++ +..++|.... +........... .+++++|||+.+.. +...+..+.|+++|+||||+++|..+..++
T Consensus 414 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~ 493 (866)
T COG0553 414 PDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGK 493 (866)
T ss_pred ccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHH
Confidence 9999 9999997752 222233332222 38999999999999 899999999999999999999999999999
Q ss_pred HHHhccCCcEEEEeCCccCCCHHHHHHHHh-hhCCCCCC-ChHHHHhhhcccccCCCh--------hHHHHHHHHhhhhh
Q psy10683 324 IVREFKTTNRLLLTGTPLQNNLHELWALLN-FLLPDIFS-SSDDFDSWFNTEEFMGDH--------SIIERLHSVLKPFL 393 (429)
Q Consensus 324 ~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~-fl~p~~~~-~~~~f~~~~~~~~~~~~~--------~~~~~L~~~l~~~~ 393 (429)
++..+++.+|++|||||++|++.|||++++ |+.|+.++ +...|.++|..+...... ..+.+|+.+++||+
T Consensus 494 ~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~ 573 (866)
T COG0553 494 ALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFI 573 (866)
T ss_pred HHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 99999999 558999999887544332 45556999999999
Q ss_pred hhhchhH--HhhcCCCceEEEEEEcCCHHHHHHHHHh
Q psy10683 394 LRRLKSE--VEKRLKPKKELKVYVGLSKMQREWYTKV 428 (429)
Q Consensus 394 lRr~k~~--v~~~LP~~~e~~v~v~~s~~Q~~~Y~~i 428 (429)
+||+|.+ +...||++.+.+++|.|++.|+++|...
T Consensus 574 lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~ 610 (866)
T COG0553 574 LRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEAL 610 (866)
T ss_pred hcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHH
Confidence 9999999 8889999999999999999999999875
No 17
>KOG1000|consensus
Probab=100.00 E-value=3.1e-35 Score=281.43 Aligned_cols=224 Identities=27% Similarity=0.468 Sum_probs=191.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCc-e
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR-A 258 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~-~ 258 (429)
.|-|||++||.|.+ ++|++++||||||+|||+|||+++.+... .+|.|||||.++...|.+++.+|+|... +
T Consensus 198 ~LlPFQreGv~faL---~RgGR~llADeMGLGKTiQAlaIA~yyra----EwplliVcPAsvrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFAL---ERGGRILLADEMGLGKTIQALAIARYYRA----EWPLLIVCPASVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred hhCchhhhhHHHHH---hcCCeEEEecccccchHHHHHHHHHHHhh----cCcEEEEecHHHhHHHHHHHHHhcccccce
Confidence 68899999999876 46888999999999999999999987655 6899999999999999999999998744 4
Q ss_pred EEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc--cCCcEEEE
Q psy10683 259 ICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF--KTTNRLLL 336 (429)
Q Consensus 259 ~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l--~~~~r~~l 336 (429)
.+..+..+.-.. ......|.|+||+++......+..-.|.+||+||+|++++..++..+++..+ .+.+.|+|
T Consensus 271 ~vv~~~~D~~~~------~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILL 344 (689)
T KOG1000|consen 271 FVVDKSSDPLPD------VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILL 344 (689)
T ss_pred EEEecccCCccc------cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEe
Confidence 455554442111 1112349999999999999999999999999999999999999999988877 78899999
Q ss_pred eCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhccccc------CCChhHHHHHHHHhhhh-hhhhchhHHhhcCCCce
Q psy10683 337 TGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEF------MGDHSIIERLHSVLKPF-LLRRLKSEVEKRLKPKK 409 (429)
Q Consensus 337 TgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~------~~~~~~~~~L~~~l~~~-~lRr~k~~v~~~LP~~~ 409 (429)
||||--.++.|||.++..+++..|.+..+|...|++... .....++++|+-+|..+ |+||+|++|.++||||.
T Consensus 345 SGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKr 424 (689)
T KOG1000|consen 345 SGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKR 424 (689)
T ss_pred cCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999999999999999999999999999999987543 23456789999999765 89999999999999997
Q ss_pred EEEEEEc
Q psy10683 410 ELKVYVG 416 (429)
Q Consensus 410 e~~v~v~ 416 (429)
..++++.
T Consensus 425 r~Vv~~~ 431 (689)
T KOG1000|consen 425 REVVYVS 431 (689)
T ss_pred eEEEEEc
Confidence 7776653
No 18
>KOG0383|consensus
Probab=100.00 E-value=2.4e-35 Score=300.49 Aligned_cols=260 Identities=38% Similarity=0.667 Sum_probs=235.1
Q ss_pred ccccCCCcccc--CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH
Q psy10683 167 VSFENSPFYIK--GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN 244 (429)
Q Consensus 167 ~~~~~~p~~~~--~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q 244 (429)
+.+..+|.++. ++.|.+||.+|++|+...+..+..+|+||+||+|||++++.+...+.......+|.|+++|.+.+.+
T Consensus 280 v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~n 359 (696)
T KOG0383|consen 280 VPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVN 359 (696)
T ss_pred CCcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccC
Confidence 34556777766 5899999999999999999999999999999999999999999988887788899999999999999
Q ss_pred HHHHHHhhcCCCceEEEeCChhhHHHHHHhhc-------------------CCCCccEEEcchHHHHHHhhhhhccCceE
Q psy10683 245 WMNEFKKWCPTLRAICLIGDQDARNAMIRDVM-------------------MPGEWDVCITSYEMCIRERGVFKKFNWRY 305 (429)
Q Consensus 245 W~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------------~~~~~dvvitty~~l~~~~~~l~~~~~~~ 305 (429)
|..++..|+|+..+..|.|..+.+..+..... ....+++.+++|++...+...+..+.|.+
T Consensus 360 we~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~ 439 (696)
T KOG0383|consen 360 WEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGL 439 (696)
T ss_pred CCCchhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcce
Confidence 99999999999999999998876654332211 11357799999999999999999999999
Q ss_pred EEecCcccccCchhHHHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCChhHHHHH
Q psy10683 306 LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERL 385 (429)
Q Consensus 306 vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L 385 (429)
+|+||+|+++|..+...+.+......+++++||||.+|++.+|+++|+||.|+.|.+..+|.+.|.... ....++.|
T Consensus 440 livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~---~~~~~~~l 516 (696)
T KOG0383|consen 440 LIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDIS---CEEQIKKL 516 (696)
T ss_pred eEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhh---HHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999887533 35678899
Q ss_pred HHHhhhhhhhhchhHHhhcCCCceEEEEEEcCCHHHHHHHHHhC
Q psy10683 386 HSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKVC 429 (429)
Q Consensus 386 ~~~l~~~~lRr~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y~~il 429 (429)
+.++.|+++||.|.|+.+.+|+|++-++.+.||+.|+++|+.+|
T Consensus 517 ~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~ 560 (696)
T KOG0383|consen 517 HLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKIL 560 (696)
T ss_pred ccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875
No 19
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.5e-31 Score=286.07 Aligned_cols=242 Identities=20% Similarity=0.207 Sum_probs=178.6
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~ 257 (429)
+..|.|||..++..+... ...+.+||||||+|||++++.++..+.. .+..+++|||||.+++.||..|+.+++. +.
T Consensus 150 ~~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~-~g~~~rvLIVvP~sL~~QW~~El~~kF~-l~ 225 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLL-TGRAERVLILVPETLQHQWLVEMLRRFN-LR 225 (956)
T ss_pred CCCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHH-cCCCCcEEEEcCHHHHHHHHHHHHHHhC-CC
Confidence 357999999998876553 3567899999999999999999988765 5677899999999999999999987763 44
Q ss_pred eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh---hhhhccCceEEEecCcccccC---chhHHHHHHHhc--c
Q psy10683 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER---GVFKKFNWRYLVIDEAHRIKN---EKSKLSEIVREF--K 329 (429)
Q Consensus 258 ~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~---~~l~~~~~~~vIiDEaH~~kn---~~s~~~~~~~~l--~ 329 (429)
..++.+....... .........++++|+||+.+.++. ..+....|++|||||||++++ ..++.++.+..+ .
T Consensus 226 ~~i~~~~~~~~~~-~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~ 304 (956)
T PRK04914 226 FSLFDEERYAEAQ-HDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV 304 (956)
T ss_pred eEEEcCcchhhhc-ccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc
Confidence 4454443211100 000011135689999999998753 446677999999999999984 345668888877 6
Q ss_pred CCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhccc------------ccCCChhHHHHH------------
Q psy10683 330 TTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTE------------EFMGDHSIIERL------------ 385 (429)
Q Consensus 330 ~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~------------~~~~~~~~~~~L------------ 385 (429)
++++++|||||++|+..|+|++++||+|+.|+++..|.+..+.. ...........|
T Consensus 305 ~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l 384 (956)
T PRK04914 305 IPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPL 384 (956)
T ss_pred cCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHH
Confidence 78999999999999999999999999999999999997644320 000011111111
Q ss_pred -------------------HHH-----hhhhhhhhchhHHhhcCCCceEEEEEEcCCHHHHHHH
Q psy10683 386 -------------------HSV-----LKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWY 425 (429)
Q Consensus 386 -------------------~~~-----l~~~~lRr~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y 425 (429)
..+ ..++|+|+++++|. .+|++....+.++|++.-+..+
T Consensus 385 ~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~ 447 (956)
T PRK04914 385 LQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAI 447 (956)
T ss_pred HhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHH
Confidence 111 12678899999988 4899999999999976655443
No 20
>KOG0298|consensus
Probab=99.98 E-value=4.2e-33 Score=291.56 Aligned_cols=225 Identities=27% Similarity=0.423 Sum_probs=190.2
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHHHHHh---------------hhcccCCCeEEEeccchHHHHHHHHHhhcCCC-ceEE
Q psy10683 197 ENGINGILADEMGLGKTLQTISLLGYMK---------------HYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTL-RAIC 260 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~~~l~---------------~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~-~~~~ 260 (429)
..|..++++++||+|||...+++...-. ......|+||||||.+++.||..||.+|+++. +++.
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 3455679999999999998887652211 11234589999999999999999999999876 9999
Q ss_pred EeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh----------------------hhhhccCceEEEecCcccccCch
Q psy10683 261 LIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER----------------------GVFKKFNWRYLVIDEAHRIKNEK 318 (429)
Q Consensus 261 ~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~----------------------~~l~~~~~~~vIiDEaH~~kn~~ 318 (429)
|.|-.+.- ...+....+||||+|||+.++.+. ++|..+.|++||+||||.+.+.+
T Consensus 452 Y~Girk~~---~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesss 528 (1394)
T KOG0298|consen 452 YFGIRKTF---WLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSS 528 (1394)
T ss_pred Eechhhhc---ccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchH
Confidence 99854432 233355578999999999998762 34666789999999999999999
Q ss_pred hHHHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCChhHHHHHHHHhhhhhhhhch
Q psy10683 319 SKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRRLK 398 (429)
Q Consensus 319 s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~lRr~k 398 (429)
|..++++..|.+.+||++||||+++ +.||+.||+||.-.||+...+|.+....+.... .....+..++...+.|+.+
T Consensus 529 S~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--a~~~~~~dl~~q~l~R~~k 605 (1394)
T KOG0298|consen 529 SAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--AKCEPLLDLFKQLLWRTFK 605 (1394)
T ss_pred HHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--hhhhhHHHHHHhhhhhhhh
Confidence 9999999999999999999999999 999999999999999999999999887654433 5667889999999999999
Q ss_pred hHHhh--cCCCceEEEEEEcCCHHHHHHHHH
Q psy10683 399 SEVEK--RLKPKKELKVYVGLSKMQREWYTK 427 (429)
Q Consensus 399 ~~v~~--~LP~~~e~~v~v~~s~~Q~~~Y~~ 427 (429)
.+|.. .+||..+.+....+|+.|-.+|+.
T Consensus 606 ~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~ 636 (1394)
T KOG0298|consen 606 SKVEHELGLPPQTEVVHRLELSAVESHVYRE 636 (1394)
T ss_pred HHHHHHhCCCchHHHHHHHHhcchhhhhhHH
Confidence 98876 489999999999999999999975
No 21
>KOG1001|consensus
Probab=99.97 E-value=8.4e-31 Score=270.87 Aligned_cols=237 Identities=31% Similarity=0.449 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHHH-hcCCCeEeecCCCCCHHHHHHHHHHHHhhhcc------cCCCeEEEeccchHHHHHHHHHhhcC-
Q psy10683 183 DYQVRGLNWMISLY-ENGINGILADEMGLGKTLQTISLLGYMKHYRN------IAGPHIVIVPKSTLLNWMNEFKKWCP- 254 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~-~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~------~~~~~LIV~P~~ll~qW~~e~~~~~~- 254 (429)
.+|..+..|+-... ....|||+||+||+|||+++++++........ ..+.+|||||.+++.||..|+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 45555554443332 22348999999999999999999976554444 56789999999999999999966553
Q ss_pred -CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcE
Q psy10683 255 -TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNR 333 (429)
Q Consensus 255 -~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r 333 (429)
.+.+.+|+| | ..+.....++|||+|||.++.. ..+..+.|.+||+||||+++|.+++.++++..+.+.+|
T Consensus 215 ~~l~v~v~~g----r---~kd~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~R 285 (674)
T KOG1001|consen 215 DKLSIYVYHG----R---TKDKSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYR 285 (674)
T ss_pred cceEEEEecc----c---ccccchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeecccee
Confidence 467778887 1 2233445788999999999976 66777999999999999999999999999999999999
Q ss_pred EEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCC-hhHHHHHHHHhhhhhhhhchhHHh-----hcCCC
Q psy10683 334 LLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGD-HSIIERLHSVLKPFLLRRLKSEVE-----KRLKP 407 (429)
Q Consensus 334 ~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~-~~~~~~L~~~l~~~~lRr~k~~v~-----~~LP~ 407 (429)
|+|||||++|++.|+|+++.|+.-+++.....|...+..+...+. ......++.+|+.+++||+|..-. -.|||
T Consensus 286 WcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lpp 365 (674)
T KOG1001|consen 286 WCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPP 365 (674)
T ss_pred eeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCccccccCc
Confidence 999999999999999999999999999999999999999888777 788889999999999999996322 25999
Q ss_pred ceEEEEEEcCCHHHHHHHHHh
Q psy10683 408 KKELKVYVGLSKMQREWYTKV 428 (429)
Q Consensus 408 ~~e~~v~v~~s~~Q~~~Y~~i 428 (429)
+...++.+.++..++.+|..+
T Consensus 366 k~v~~~~~~~~~~e~~~y~~l 386 (674)
T KOG1001|consen 366 KTVFVTEVDLSKSERSAYKAL 386 (674)
T ss_pred ceeEeeeccccHhHHHHHHHH
Confidence 999999999999999999875
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.1e-23 Score=218.85 Aligned_cols=195 Identities=22% Similarity=0.358 Sum_probs=140.8
Q ss_pred CCCChHHHHHHHHHHHHHHhcC--CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc-hHHHHHHHHHhhc-
Q psy10683 178 GGEMRDYQVRGLNWMISLYENG--INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS-TLLNWMNEFKKWC- 253 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~-ll~qW~~e~~~~~- 253 (429)
...|||||.+|+.++.. ++ ++|+++++||+|||++++++++.+ .+++|||||.. ++.||.++|.+|+
T Consensus 253 ~~~LRpYQ~eAl~~~~~---~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CCCcCHHHHHHHHHHHh---cCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 57899999999998753 33 479999999999999999988765 35899999985 5899999999997
Q ss_pred -CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHH----------hhhhhccCceEEEecCcccccCchhHHH
Q psy10683 254 -PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRE----------RGVFKKFNWRYLVIDEAHRIKNEKSKLS 322 (429)
Q Consensus 254 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~----------~~~l~~~~~~~vIiDEaH~~kn~~s~~~ 322 (429)
+...+..+.|..... .....+|+|+||+++... ...+....|++||+||||++.+ ....
T Consensus 324 l~~~~I~~~tg~~k~~--------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr 393 (732)
T TIGR00603 324 IDDSQICRFTSDAKER--------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFR 393 (732)
T ss_pred CCCceEEEEecCcccc--------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHH
Confidence 345666666654321 113467999999998643 2345556899999999999954 4455
Q ss_pred HHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCChhHHHHHHHHhhhhhhhhchhHHh
Q psy10683 323 EIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRRLKSEVE 402 (429)
Q Consensus 323 ~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~lRr~k~~v~ 402 (429)
+++..+.+.+||+|||||++++- .+..+.++ +.|.+.+..-.++.
T Consensus 394 ~il~~l~a~~RLGLTATP~ReD~--~~~~L~~L---------------------------------iGP~vye~~~~eLi 438 (732)
T TIGR00603 394 RVLTIVQAHCKLGLTATLVREDD--KITDLNFL---------------------------------IGPKLYEANWMELQ 438 (732)
T ss_pred HHHHhcCcCcEEEEeecCcccCC--chhhhhhh---------------------------------cCCeeeecCHHHHH
Confidence 67778899999999999998763 23333332 22222222222332
Q ss_pred --hcCCCceEEEEEEcCCHHHHHHHH
Q psy10683 403 --KRLKPKKELKVYVGLSKMQREWYT 426 (429)
Q Consensus 403 --~~LP~~~e~~v~v~~s~~Q~~~Y~ 426 (429)
+.|.+.....|+|+|++.....|.
T Consensus 439 ~~G~LA~~~~~ev~v~~t~~~~~~yl 464 (732)
T TIGR00603 439 KKGFIANVQCAEVWCPMTPEFYREYL 464 (732)
T ss_pred hCCccccceEEEEEecCCHHHHHHHH
Confidence 346677777899999988766664
No 23
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.79 E-value=2.1e-18 Score=174.12 Aligned_cols=199 Identities=21% Similarity=0.314 Sum_probs=143.8
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC
Q psy10683 177 KGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT 255 (429)
Q Consensus 177 ~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~ 255 (429)
....|||||.+++..+...+.....|++..++|.|||+.++.++..+.. .+|||||. .++.||.+.+.+++..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCC
Confidence 3568999999999988877666788999999999999999999977655 49999999 7889999888888754
Q ss_pred C-ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh--hhhhccCceEEEecCcccccCchhHHHHHHHhccCCc
Q psy10683 256 L-RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER--GVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTN 332 (429)
Q Consensus 256 ~-~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~--~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~ 332 (429)
. .+..+.|...... . ..|+++||+++.+.. ..+..-.|++||+||||++..+... ..+..+.+.+
T Consensus 107 ~~~~g~~~~~~~~~~---------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~ 174 (442)
T COG1061 107 NDEIGIYGGGEKELE---------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR--RILELLSAAY 174 (442)
T ss_pred ccccceecCceeccC---------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH--HHHHhhhccc
Confidence 3 3444444333210 1 359999999998863 4444447999999999998664433 3445555666
Q ss_pred -EEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCChhHHHHHHHHhhhhhhhhchhHH-h-hcCCCce
Q psy10683 333 -RLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRRLKSEV-E-KRLKPKK 409 (429)
Q Consensus 333 -r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~lRr~k~~v-~-~~LP~~~ 409 (429)
+++|||||.+.+......+..++ .|.+......+. . +.|.|..
T Consensus 175 ~~LGLTATp~R~D~~~~~~l~~~~----------------------------------g~~vy~~~~~~li~~g~Lap~~ 220 (442)
T COG1061 175 PRLGLTATPEREDGGRIGDLFDLI----------------------------------GPIVYEVSLKELIDEGYLAPYK 220 (442)
T ss_pred ceeeeccCceeecCCchhHHHHhc----------------------------------CCeEeecCHHHHHhCCCccceE
Confidence 99999999755533333333333 333333443333 3 3588889
Q ss_pred EEEEEEcCCHHHHHHHHH
Q psy10683 410 ELKVYVGLSKMQREWYTK 427 (429)
Q Consensus 410 e~~v~v~~s~~Q~~~Y~~ 427 (429)
...+++.++..++..|..
T Consensus 221 ~~~i~~~~t~~~~~~~~~ 238 (442)
T COG1061 221 YVEIKVTLTEDEEREYAK 238 (442)
T ss_pred EEEEEeccchHHHHHhhh
Confidence 999999999998888864
No 24
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.78 E-value=1.9e-18 Score=153.89 Aligned_cols=153 Identities=24% Similarity=0.361 Sum_probs=109.7
Q ss_pred CCChHHHHHHHHHHHHHHhcC---CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC
Q psy10683 179 GEMRDYQVRGLNWMISLYENG---INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP 254 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~---~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~ 254 (429)
..|||||.+++..+...+... ..+++.++||+|||.+++.++..+.. +++|+||. +++.||.++|..+.+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 368999999999999888765 77899999999999999988877655 89999999 889999999987775
Q ss_pred CCceEEEeCC-------------hhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh-------------hhccCceEEEe
Q psy10683 255 TLRAICLIGD-------------QDARNAMIRDVMMPGEWDVCITSYEMCIRERGV-------------FKKFNWRYLVI 308 (429)
Q Consensus 255 ~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~-------------l~~~~~~~vIi 308 (429)
.......... ..... .........++++++++.+...... .....+++||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSKEFISIQDDISD---KSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp TSEEEEE--GGGCCE-SEEETTTTEEEH---HHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhccccccccccccccccccccccc---ccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 5433322110 00001 0112234667999999999866432 22346899999
Q ss_pred cCcccccCchhHHHHHHHhccCCcEEEEeCCccC
Q psy10683 309 DEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 342 (429)
Q Consensus 309 DEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~ 342 (429)
||||++.+... ++.+....+.++++|||||.+
T Consensus 153 DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 153 DEAHHYPSDSS--YREIIEFKAAFILGLTATPFR 184 (184)
T ss_dssp ETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S-
T ss_pred ehhhhcCCHHH--HHHHHcCCCCeEEEEEeCccC
Confidence 99999865332 555555888999999999963
No 25
>PRK13766 Hef nuclease; Provisional
Probab=99.68 E-value=7.8e-16 Score=166.98 Aligned_cols=211 Identities=18% Similarity=0.181 Sum_probs=139.7
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC--
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT-- 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~-- 255 (429)
.++|+||.+.+..++. .++++++++|+|||++++.++..+.. ...+++|||||. .+..||.+++.+++..
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4789999998876543 38999999999999998887776553 345789999998 7889999999988643
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh--hhhhccCceEEEecCcccccCchhHHHHHHH---hccC
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER--GVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR---EFKT 330 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~--~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~---~l~~ 330 (429)
..+..+.|....... ... ..+.+|+++|++.+..+. ..+....|++||+||||++.+..+....+-. ....
T Consensus 87 ~~v~~~~g~~~~~~r--~~~--~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 87 EKIVVFTGEVSPEKR--AEL--WEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred ceEEEEeCCCCHHHH--HHH--HhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 467777775543221 111 134689999999987764 2333447899999999999765443322211 1234
Q ss_pred CcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChH----HHHhhhccc----ccCCChhHHHHHHHHhhhhhhhhchhHH
Q psy10683 331 TNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSD----DFDSWFNTE----EFMGDHSIIERLHSVLKPFLLRRLKSEV 401 (429)
Q Consensus 331 ~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~----~f~~~~~~~----~~~~~~~~~~~L~~~l~~~~lRr~k~~v 401 (429)
.++++|||||..+ ...+..++.-|.......+. .....+... ....-...+..++..|..++-++.+...
T Consensus 163 ~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~ 240 (773)
T PRK13766 163 PLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLK 240 (773)
T ss_pred CEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999865 56666666665443322111 122222211 1122245567788888888877766544
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.68 E-value=5.9e-16 Score=159.19 Aligned_cols=148 Identities=17% Similarity=0.268 Sum_probs=106.8
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc--C
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC--P 254 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~--~ 254 (429)
...|||||.+++..++. +.++++..++|+|||++++.++..... ....++|||||. .|+.||.++|.++. +
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~--~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLE--NYEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 36899999999976553 567899999999999988776554433 223489999999 88999999999876 3
Q ss_pred CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-cCCcE
Q psy10683 255 TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-KTTNR 333 (429)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~~~~r 333 (429)
...+....+..... ...+|+|+|++.+.+....+. -.+++||+||||++... .....+..+ ++.++
T Consensus 186 ~~~~~~i~~g~~~~----------~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~~ 252 (501)
T PHA02558 186 REAMHKIYSGTAKD----------TDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDECHLFTGK--SLTSIITKLDNCKFK 252 (501)
T ss_pred ccceeEEecCcccC----------CCCCEEEeeHHHHhhchhhhc-cccCEEEEEchhcccch--hHHHHHHhhhccceE
Confidence 33333333322110 245799999999876543221 26789999999999653 345566667 57889
Q ss_pred EEEeCCccCCC
Q psy10683 334 LLLTGTPLQNN 344 (429)
Q Consensus 334 ~~lTgTP~~n~ 344 (429)
++|||||....
T Consensus 253 lGLTATp~~~~ 263 (501)
T PHA02558 253 FGLTGSLRDGK 263 (501)
T ss_pred EEEeccCCCcc
Confidence 99999996543
No 27
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.64 E-value=4.7e-15 Score=132.83 Aligned_cols=160 Identities=26% Similarity=0.328 Sum_probs=111.7
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTL 256 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~ 256 (429)
...++++|.+++..+.... ..+++..++|+|||..++..+...... ...+++||++|. .+..||..++...++..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKR-GKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhcc-cCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3578999999998776421 688999999999999877777665542 225689999994 78899999999888652
Q ss_pred ---ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccC-ch-hHHHHHHHhc-
Q psy10683 257 ---RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKN-EK-SKLSEIVREF- 328 (429)
Q Consensus 257 ---~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn-~~-s~~~~~~~~l- 328 (429)
....+.+... ... .... ....++++++|++.+...... .....++++|+||+|++.. .. ......+..+
T Consensus 82 ~~~~~~~~~~~~~-~~~-~~~~-~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 82 GLKVVGLYGGDSK-REQ-LRKL-ESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred CeEEEEEeCCcch-HHH-HHHH-hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 2333333332 111 1111 123348999999999877655 4455788999999999985 33 3333444444
Q ss_pred cCCcEEEEeCCccCCC
Q psy10683 329 KTTNRLLLTGTPLQNN 344 (429)
Q Consensus 329 ~~~~r~~lTgTP~~n~ 344 (429)
...+++++||||..+.
T Consensus 159 ~~~~~v~~saT~~~~~ 174 (201)
T smart00487 159 KNVQLLLLSATPPEEI 174 (201)
T ss_pred ccceEEEEecCCchhH
Confidence 5788999999997443
No 28
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.62 E-value=8.1e-15 Score=123.67 Aligned_cols=136 Identities=24% Similarity=0.318 Sum_probs=99.0
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH-HHHHHHhhcC-CCceEEEeCChhhHHHHHHhhcCC
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN-WMNEFKKWCP-TLRAICLIGDQDARNAMIRDVMMP 278 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q-W~~e~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~ 278 (429)
++++.+++|+|||.+++.++..+... ...++++|+||...+.+ |.+.+..+.. ...+..+.+........ ....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 77 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLLS 77 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHhc
Confidence 57899999999999999999887663 45678999999976655 5566677664 45666666655443322 1223
Q ss_pred CCccEEEcchHHHHHHhhhh--hccCceEEEecCcccccCchhHHH---HHHHhccCCcEEEEeCCc
Q psy10683 279 GEWDVCITSYEMCIRERGVF--KKFNWRYLVIDEAHRIKNEKSKLS---EIVREFKTTNRLLLTGTP 340 (429)
Q Consensus 279 ~~~dvvitty~~l~~~~~~l--~~~~~~~vIiDEaH~~kn~~s~~~---~~~~~l~~~~r~~lTgTP 340 (429)
...+++++||+.+....... ....+++||+||+|.+.+...... ..........++++||||
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 56789999999887765432 344789999999999987655443 344445778899999998
No 29
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.62 E-value=6.9e-15 Score=161.74 Aligned_cols=160 Identities=19% Similarity=0.174 Sum_probs=109.2
Q ss_pred CCCChHHHHHHHHHHHHHHhcC-CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENG-INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT 255 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~-~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~ 255 (429)
+..||+||.+||..+...+..+ .++++++.+|+|||+++++++..+.. ....+++|+|+|. .|+.||.++|..+...
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~-~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK-AKRFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh-cCccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 3579999999999888777654 56899999999999999998877765 3345689999998 7889999999987432
Q ss_pred Cc-eE-EEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh-------hhccCceEEEecCcccccCc---------
Q psy10683 256 LR-AI-CLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV-------FKKFNWRYLVIDEAHRIKNE--------- 317 (429)
Q Consensus 256 ~~-~~-~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~-------l~~~~~~~vIiDEaH~~kn~--------- 317 (429)
.. .. ..++... +..........|+|+|++++.+.... +....|++||+||||+....
T Consensus 490 ~~~~~~~i~~i~~-----L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~ 564 (1123)
T PRK11448 490 GDQTFASIYDIKG-----LEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGEL 564 (1123)
T ss_pred cccchhhhhchhh-----hhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchh
Confidence 11 11 1111111 11111123467999999998765311 22346889999999996310
Q ss_pred --------hhHHHHHHHhccCCcEEEEeCCccCCC
Q psy10683 318 --------KSKLSEIVREFKTTNRLLLTGTPLQNN 344 (429)
Q Consensus 318 --------~s~~~~~~~~l~~~~r~~lTgTP~~n~ 344 (429)
.+...+.+..+. ..+++|||||..++
T Consensus 565 ~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t 598 (1123)
T PRK11448 565 QFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT 598 (1123)
T ss_pred ccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch
Confidence 122333343333 58899999998754
No 30
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.57 E-value=4.3e-14 Score=149.64 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=109.2
Q ss_pred CCChHHHHHHHHHHHHHHhc------CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHh
Q psy10683 179 GEMRDYQVRGLNWMISLYEN------GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKK 251 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~------~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~ 251 (429)
.-.|+||..||+.+...+.. ..+|++.+.+|+|||++++.++..+.. .....++|||||. .|..||.++|..
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~-~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE-LLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh-hcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 35789999999999888765 357999999999999999999887764 3345678889998 788999999999
Q ss_pred hcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh-hhhcc----CceEEEecCcccccCchhHHHHHH-
Q psy10683 252 WCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG-VFKKF----NWRYLVIDEAHRIKNEKSKLSEIV- 325 (429)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~-~l~~~----~~~~vIiDEaH~~kn~~s~~~~~~- 325 (429)
+.++.. ...++.... ..........|+|+|++++.+... .+..+ ...+||+||||+... ....+.+
T Consensus 316 ~~~~~~--~~~~s~~~L----~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l~ 387 (667)
T TIGR00348 316 LQKDCA--ERIESIAEL----KRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKNLK 387 (667)
T ss_pred hCCCCC--cccCCHHHH----HHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHHHH
Confidence 875311 111121111 111122345799999999986322 12221 123899999999643 3344555
Q ss_pred HhccCCcEEEEeCCccCC
Q psy10683 326 REFKTTNRLLLTGTPLQN 343 (429)
Q Consensus 326 ~~l~~~~r~~lTgTP~~n 343 (429)
..++...++++||||+..
T Consensus 388 ~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 388 KALKNASFFGFTGTPIFK 405 (667)
T ss_pred hhCCCCcEEEEeCCCccc
Confidence 456778999999999864
No 31
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.54 E-value=1.4e-14 Score=148.83 Aligned_cols=151 Identities=19% Similarity=0.255 Sum_probs=118.2
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCC-eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGIN-GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT 255 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~-~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~ 255 (429)
...+|+||..|++.+...+.+|++ .+|++.+|+|||.+|++++..|.. .+..+++|.++-. +|+.|-..+|..+.|.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r-~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK-SGWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh-cchhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 468999999999999999988875 788999999999999999998887 5667788988855 8889999999999998
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh-------hhccCceEEEecCcccccCchhHHHHHHHhc
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV-------FKKFNWRYLVIDEAHRIKNEKSKLSEIVREF 328 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~-------l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l 328 (429)
...+........ ..++.|+|+||+++...... +....||+|||||||+- ..+-++.+...
T Consensus 242 ~~~~n~i~~~~~----------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I~dY 308 (875)
T COG4096 242 GTKMNKIEDKKG----------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSEWSSILDY 308 (875)
T ss_pred ccceeeeecccC----------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhhhHHHHHH
Confidence 777665543321 13578999999999876433 33346999999999993 22333344445
Q ss_pred cCCcEEEEeCCccC
Q psy10683 329 KTTNRLLLTGTPLQ 342 (429)
Q Consensus 329 ~~~~r~~lTgTP~~ 342 (429)
....+++|||||-.
T Consensus 309 FdA~~~gLTATP~~ 322 (875)
T COG4096 309 FDAATQGLTATPKE 322 (875)
T ss_pred HHHHHHhhccCccc
Confidence 55566777999976
No 32
>KOG1123|consensus
Probab=99.53 E-value=7.9e-15 Score=142.03 Aligned_cols=148 Identities=24% Similarity=0.454 Sum_probs=112.7
Q ss_pred CCCChHHHHHHHHHHHHHHhcC--CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccch-HHHHHHHHHhhcC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENG--INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKST-LLNWMNEFKKWCP 254 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~l-l~qW~~e~~~~~~ 254 (429)
...+||||...+..|.. +| +.||+.-++|.|||++.+..++.+. +..||+|-+++ +.||..+|..|..
T Consensus 300 st~iRpYQEksL~KMFG---NgRARSGiIVLPCGAGKtLVGvTAa~tik------K~clvLcts~VSVeQWkqQfk~wst 370 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKTLVGVTAACTIK------KSCLVLCTSAVSVEQWKQQFKQWST 370 (776)
T ss_pred ccccCchHHHHHHHHhC---CCcccCceEEEecCCCCceeeeeeeeeec------ccEEEEecCccCHHHHHHHHHhhcc
Confidence 46899999999987753 33 3699999999999999988876554 36899997754 8999999999983
Q ss_pred --CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHH----------hhhhhccCceEEEecCcccccCchhHHH
Q psy10683 255 --TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRE----------RGVFKKFNWRYLVIDEAHRIKNEKSKLS 322 (429)
Q Consensus 255 --~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~----------~~~l~~~~~~~vIiDEaH~~kn~~s~~~ 322 (429)
+..+..+....+.+ .+....|+|+||.++..- ...+....|.++|+||.|.+ |.....
T Consensus 371 i~d~~i~rFTsd~Ke~--------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--PA~MFR 440 (776)
T KOG1123|consen 371 IQDDQICRFTSDAKER--------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--PAKMFR 440 (776)
T ss_pred cCccceEEeecccccc--------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--hHHHHH
Confidence 34455554433322 235567999999998632 45678889999999999997 434445
Q ss_pred HHHHhccCCcEEEEeCCccCCC
Q psy10683 323 EIVREFKTTNRLLLTGTPLQNN 344 (429)
Q Consensus 323 ~~~~~l~~~~r~~lTgTP~~n~ 344 (429)
+.+.-+.+..+++||||-++.+
T Consensus 441 RVlsiv~aHcKLGLTATLvRED 462 (776)
T KOG1123|consen 441 RVLSIVQAHCKLGLTATLVRED 462 (776)
T ss_pred HHHHHHHHHhhccceeEEeecc
Confidence 5556668888999999998765
No 33
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.50 E-value=5.7e-13 Score=117.02 Aligned_cols=157 Identities=23% Similarity=0.303 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC--CceE
Q psy10683 183 DYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT--LRAI 259 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~--~~~~ 259 (429)
|+|.+++..+. ++.+.++..++|+|||..++..+....... ....++|++|. .+..|-.+++..++.. .++.
T Consensus 2 ~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 78999998665 467789999999999999876554433322 44588999998 6778888888888754 6777
Q ss_pred EEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCc--hhHHHHHHHhc---cCCc
Q psy10683 260 CLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNE--KSKLSEIVREF---KTTN 332 (429)
Q Consensus 260 ~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~l---~~~~ 332 (429)
.+++............ .+..+|+|+|++.+...... ..-...++||+||+|.+... .......+..+ ...+
T Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 77 LLHGGQSISEDQREVL--SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EESTTSCHHHHHHHHH--HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccc--cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 7777554221111111 34678999999999876654 12234789999999998652 22333444444 3467
Q ss_pred EEEEeCCccCCCHHH
Q psy10683 333 RLLLTGTPLQNNLHE 347 (429)
Q Consensus 333 r~~lTgTP~~n~~~d 347 (429)
.+++||||- .++++
T Consensus 155 ~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 155 IILLSATLP-SNVEK 168 (169)
T ss_dssp EEEEESSST-HHHHH
T ss_pred EEEEeeCCC-hhHhh
Confidence 899999997 55544
No 34
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.47 E-value=2.5e-12 Score=125.75 Aligned_cols=202 Identities=19% Similarity=0.162 Sum_probs=133.0
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc--CC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC--PT 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~--~~ 255 (429)
.+-|.||..-....+ ..+++++.++|+|||++|+.++.....+. .+.+|+++|+ .|+.|-..-+.+.+ |.
T Consensus 14 ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~--~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWF--GGKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhc--CCeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 477899988776444 34899999999999999988887554432 3478999999 88889888888887 56
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCchhH--HHHHHHhc-cC
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNEKSK--LSEIVREF-KT 330 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s~--~~~~~~~l-~~ 330 (429)
..+..+.|.......... + .+-.|+++|.+++.++.. .+..-++.++|+||||+.-+..+- .++..... +.
T Consensus 87 ~~i~~ltGev~p~~R~~~-w---~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~ 162 (542)
T COG1111 87 DEIAALTGEVRPEEREEL-W---AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKN 162 (542)
T ss_pred hheeeecCCCChHHHHHH-H---hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccC
Confidence 788888887644322111 1 234699999999988853 345557889999999998553332 22222222 44
Q ss_pred CcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCChhHHHHHHHHhhhhhhhhch-hHHhhcCCCce
Q psy10683 331 TNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRRLK-SEVEKRLKPKK 409 (429)
Q Consensus 331 ~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~lRr~k-~~v~~~LP~~~ 409 (429)
.+.++|||||= ++...+...++=|..+ .+.+|.-. .||...+-.+.
T Consensus 163 ~~ilgLTASPG-s~~ekI~eV~~nLgIe--------------------------------~vevrTE~d~DV~~Yv~~~k 209 (542)
T COG1111 163 PLILGLTASPG-SDLEKIQEVVENLGIE--------------------------------KVEVRTEEDPDVRPYVKKIK 209 (542)
T ss_pred ceEEEEecCCC-CCHHHHHHHHHhCCcc--------------------------------eEEEecCCCccHHHhhccce
Confidence 46899999993 3333333333322211 12222222 35555666677
Q ss_pred EEEEEEcCCHHHHHH
Q psy10683 410 ELKVYVGLSKMQREW 424 (429)
Q Consensus 410 e~~v~v~~s~~Q~~~ 424 (429)
..++.|+++++=.++
T Consensus 210 ve~ikV~lp~e~~~i 224 (542)
T COG1111 210 VEWIKVDLPEEIKEI 224 (542)
T ss_pred eEEEeccCcHHHHHH
Confidence 777777777765554
No 35
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.47 E-value=1.8e-12 Score=117.63 Aligned_cols=155 Identities=18% Similarity=0.252 Sum_probs=105.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHH-HHHHHhhhc-ccCCCeEEEecc-chHHHHHHHHHhhcC--
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS-LLGYMKHYR-NIAGPHIVIVPK-STLLNWMNEFKKWCP-- 254 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~-~~~~l~~~~-~~~~~~LIV~P~-~ll~qW~~e~~~~~~-- 254 (429)
.++++|.+++..+.. +.+.++..++|+|||+..+. ++..+.... .....++||+|. .++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 578999999986664 78899999999999988544 444444321 234568999998 677889888888764
Q ss_pred CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCch--hHHHHHHHhcc-
Q psy10683 255 TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNEK--SKLSEIVREFK- 329 (429)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~l~- 329 (429)
+..+..+.|........ ... ..+.+|+|+|.+.+..... .+.-..++++|+||+|.+.+.. ......+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~-~~~--~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~ 173 (203)
T cd00268 97 NLKVVVIYGGTSIDKQI-RKL--KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK 173 (203)
T ss_pred CceEEEEECCCCHHHHH-HHh--cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc
Confidence 56667777765543321 111 1467899999887655322 1222356899999999986432 22233344444
Q ss_pred CCcEEEEeCCcc
Q psy10683 330 TTNRLLLTGTPL 341 (429)
Q Consensus 330 ~~~r~~lTgTP~ 341 (429)
....+++||||-
T Consensus 174 ~~~~~~~SAT~~ 185 (203)
T cd00268 174 DRQTLLFSATMP 185 (203)
T ss_pred ccEEEEEeccCC
Confidence 466899999997
No 36
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.42 E-value=4.1e-12 Score=134.20 Aligned_cols=161 Identities=15% Similarity=0.214 Sum_probs=112.1
Q ss_pred CCCChHHHHHHHHHHHHHHhcC--CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENG--INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP 254 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~ 254 (429)
+..|.++|.+++..+....... .+.++..++|+|||+.++..+..... ....++|++|. .|..|+.+++.++++
T Consensus 233 pf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---~g~qvlilaPT~~LA~Q~~~~~~~l~~ 309 (630)
T TIGR00643 233 PFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---AGYQVALMAPTEILAEQHYNSLRNLLA 309 (630)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEECCHHHHHHHHHHHHHHHhc
Confidence 3579999999999988766443 35799999999999987644433322 24578999999 556889999999986
Q ss_pred --CCceEEEeCChhhHH-HHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhcc--
Q psy10683 255 --TLRAICLIGDQDARN-AMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFK-- 329 (429)
Q Consensus 255 --~~~~~~~~g~~~~~~-~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~-- 329 (429)
++++.+++|...... .........+..+|+|.|...+.... .-.+..+|||||+|++.. .+.........
T Consensus 310 ~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~--~qr~~l~~~~~~~ 384 (630)
T TIGR00643 310 PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGV--EQRKKLREKGQGG 384 (630)
T ss_pred ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc---cccccceEEEechhhccH--HHHHHHHHhcccC
Confidence 477888888654322 11222233467899999998875432 123567999999999743 22222333333
Q ss_pred -CCcEEEEeCCccCCCHH
Q psy10683 330 -TTNRLLLTGTPLQNNLH 346 (429)
Q Consensus 330 -~~~r~~lTgTP~~n~~~ 346 (429)
..+.++|||||+..++.
T Consensus 385 ~~~~~l~~SATp~prtl~ 402 (630)
T TIGR00643 385 FTPHVLVMSATPIPRTLA 402 (630)
T ss_pred CCCCEEEEeCCCCcHHHH
Confidence 57899999999886553
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=3e-12 Score=130.98 Aligned_cols=167 Identities=20% Similarity=0.253 Sum_probs=113.7
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~ 257 (429)
..++|+|.+++..++. +.+.++..++|+|||+..+.-+ +. ..+.+|||+|. +|+.++...+... +..
T Consensus 10 ~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~--l~----~~~~~lVi~P~~~L~~dq~~~l~~~--gi~ 77 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPA--LC----SDGITLVISPLISLMEDQVLQLKAS--GIP 77 (470)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHH--HH----cCCcEEEEecHHHHHHHHHHHHHHc--CCc
Confidence 3789999999987664 6689999999999998653222 22 24578999999 7778888888764 344
Q ss_pred eEEEeCChhh--HHHHHHhhcCCCCccEEEcchHHHHHHh---hhh-hccCceEEEecCcccccCchh-------HHHHH
Q psy10683 258 AICLIGDQDA--RNAMIRDVMMPGEWDVCITSYEMCIRER---GVF-KKFNWRYLVIDEAHRIKNEKS-------KLSEI 324 (429)
Q Consensus 258 ~~~~~g~~~~--~~~~~~~~~~~~~~dvvitty~~l~~~~---~~l-~~~~~~~vIiDEaH~~kn~~s-------~~~~~ 324 (429)
+..+.+.... +....... ..+.++++++|.+.+.... ..+ ......+|||||||.+..... .+...
T Consensus 78 ~~~l~~~~~~~~~~~i~~~~-~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVLTDL-KDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred EEEEeCCCCHHHHHHHHHHH-hcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 5555554332 22222222 3467899999999876433 223 345788999999999854321 12223
Q ss_pred HHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCC
Q psy10683 325 VREFKTTNRLLLTGTPLQNNLHELWALLNFLLPD 358 (429)
Q Consensus 325 ~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~ 358 (429)
...+.....+++||||-.....++...+.+-.|.
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~ 190 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQ 190 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCc
Confidence 3345667789999999887778888777655443
No 38
>KOG0385|consensus
Probab=99.40 E-value=1e-13 Score=140.40 Aligned_cols=76 Identities=75% Similarity=1.147 Sum_probs=64.8
Q ss_pred ChhhHHHHHHhcccc--CCCccccccCCCCcccCCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccCC
Q psy10683 2 TEQEEDEELLANANT--EGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGP 77 (429)
Q Consensus 2 ~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~ 77 (429)
.|.+|++|.+.+... .++....+..+|.++.++.|||||.+||+||+.+|.++.+|||||+||||||+|+|++++.
T Consensus 132 te~eed~e~~~~~~~e~~~~~~~~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~y 209 (971)
T KOG0385|consen 132 TEQEEDEELLKEEEKEEETTVQNRFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGY 209 (971)
T ss_pred ccccchHHHHHHhhhhhhhhhhccccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHH
Confidence 356777777775443 4455556777999999899999999999999999999999999999999999999999863
No 39
>KOG0354|consensus
Probab=99.40 E-value=4.7e-12 Score=130.45 Aligned_cols=171 Identities=18% Similarity=0.218 Sum_probs=119.0
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTL 256 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~ 256 (429)
...||+||.+-+.-.+ +.+.|++.++|+|||.+|+-++....++... +++++.+|. .|+.|-...|...+-.-
T Consensus 60 ~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~~ 133 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIPY 133 (746)
T ss_pred cccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCcc
Confidence 4689999999886433 7899999999999999998888766665444 788999999 67778778888877444
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhcc---CceEEEecCcccccC--chhHHHHHHHhc--c
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKF---NWRYLVIDEAHRIKN--EKSKLSEIVREF--K 329 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~---~~~~vIiDEaH~~kn--~~s~~~~~~~~l--~ 329 (429)
.+....|....+.... ..-...+|++.|.+.+..+......- .|.++|+||||+... +.+...+.+..+ .
T Consensus 134 ~~T~~l~~~~~~~~r~---~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 134 SVTGQLGDTVPRSNRG---EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred cceeeccCccCCCchh---hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 5555555433332211 22245689999999998886554333 489999999999733 223334333333 3
Q ss_pred CCcEEEEeCCccCCCHHHHHHHHhhhCCC
Q psy10683 330 TTNRLLLTGTPLQNNLHELWALLNFLLPD 358 (429)
Q Consensus 330 ~~~r~~lTgTP~~n~~~dl~~ll~fl~p~ 358 (429)
..+.++|||||= ++.....+.+.=|.-.
T Consensus 211 ~~qILgLTASpG-~~~~~v~~~I~~L~as 238 (746)
T KOG0354|consen 211 GNQILGLTASPG-SKLEQVQNVIDNLCAS 238 (746)
T ss_pred cccEEEEecCCC-ccHHHHHHHHHhhhee
Confidence 346799999998 6666666655544443
No 40
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.34 E-value=1.8e-11 Score=130.40 Aligned_cols=158 Identities=22% Similarity=0.286 Sum_probs=110.7
Q ss_pred CCCChHHHHHHHHHHHHHHhcC--CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENG--INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP 254 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~ 254 (429)
+..|.++|.+++..+......+ .+.++..++|+|||+.++..+..... ....+||++|. .|..|+.+.+.++++
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGYQAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 3579999999999888766543 35799999999999988655433222 24578999999 666789999999886
Q ss_pred C--CceEEEeCChhh--HHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-c
Q psy10683 255 T--LRAICLIGDQDA--RNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-K 329 (429)
Q Consensus 255 ~--~~~~~~~g~~~~--~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~ 329 (429)
. +++.+++|.... +..... ....+..+|+|+|...+.... .+ .+.++||+||+|++.. .....+... .
T Consensus 336 ~~~i~v~ll~G~~~~~~r~~~~~-~l~~g~~~IvVgT~~ll~~~v-~~--~~l~lvVIDE~Hrfg~---~qr~~l~~~~~ 408 (681)
T PRK10917 336 PLGIRVALLTGSLKGKERREILE-AIASGEADIVIGTHALIQDDV-EF--HNLGLVIIDEQHRFGV---EQRLALREKGE 408 (681)
T ss_pred hcCcEEEEEcCCCCHHHHHHHHH-HHhCCCCCEEEchHHHhcccc-hh--cccceEEEechhhhhH---HHHHHHHhcCC
Confidence 5 677888887543 222222 233457899999998775321 12 2567899999999842 222333333 3
Q ss_pred CCcEEEEeCCccCCCH
Q psy10683 330 TTNRLLLTGTPLQNNL 345 (429)
Q Consensus 330 ~~~r~~lTgTP~~n~~ 345 (429)
..+.++|||||+...+
T Consensus 409 ~~~iL~~SATp~prtl 424 (681)
T PRK10917 409 NPHVLVMTATPIPRTL 424 (681)
T ss_pred CCCEEEEeCCCCHHHH
Confidence 5788999999987654
No 41
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.29 E-value=6.8e-11 Score=120.89 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=105.3
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHH-HHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc---C
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS-LLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC---P 254 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~-~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~---~ 254 (429)
.+.|+|.+++..++ ++.+.++..++|+|||...+. ++..+.. ......+||+||. .|..||.+++.++. +
T Consensus 26 ~~t~iQ~~ai~~~l----~g~dvi~~a~TGsGKT~a~~lpil~~l~~-~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 26 EMTPIQAQSLPAIL----AGKDVIAQAKTGSGKTAAFGLGLLQKLDV-KRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHhhh-ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 57799999998766 477899999999999987543 3333322 2223357999999 77788999888764 4
Q ss_pred CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCch--hHHHHHHHhccC
Q psy10683 255 TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNEK--SKLSEIVREFKT 330 (429)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~l~~ 330 (429)
+.++..++|........ .... ...+|+|+|.+.+..... .+.-..+++||+||||++.... ..+...+..+..
T Consensus 101 ~~~v~~~~Gg~~~~~~~-~~l~--~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~ 177 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQI-DSLE--HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA 177 (460)
T ss_pred CcEEEEEECCCChHHHH-HHhc--CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc
Confidence 67788888866543321 1111 467899999998865432 1222357799999999985432 334445555543
Q ss_pred -CcEEEEeCCcc
Q psy10683 331 -TNRLLLTGTPL 341 (429)
Q Consensus 331 -~~r~~lTgTP~ 341 (429)
...+++|||+-
T Consensus 178 ~~q~ll~SAT~~ 189 (460)
T PRK11776 178 RRQTLLFSATYP 189 (460)
T ss_pred ccEEEEEEecCc
Confidence 45699999973
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.29 E-value=7e-11 Score=124.39 Aligned_cols=165 Identities=20% Similarity=0.228 Sum_probs=111.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCce
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRA 258 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~ 258 (429)
.++|+|.+++..++ .+.++++..++|.|||+.....+ +.. .+.+|||+|. +|+.++.+.+... +...
T Consensus 25 ~~r~~Q~~ai~~il----~g~dvlv~apTGsGKTl~y~lpa--l~~----~g~tlVisPl~sL~~dqv~~l~~~--gi~~ 92 (607)
T PRK11057 25 QFRPGQQEIIDAVL----SGRDCLVVMPTGGGKSLCYQIPA--LVL----DGLTLVVSPLISLMKDQVDQLLAN--GVAA 92 (607)
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHH--HHc----CCCEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 68999999998765 47789999999999998654222 222 4578999999 7778888888765 3444
Q ss_pred EEEeCChhhH--HHHHHhhcCCCCccEEEcchHHHHHH--hhhhhccCceEEEecCcccccCch-------hHHHHHHHh
Q psy10683 259 ICLIGDQDAR--NAMIRDVMMPGEWDVCITSYEMCIRE--RGVFKKFNWRYLVIDEAHRIKNEK-------SKLSEIVRE 327 (429)
Q Consensus 259 ~~~~g~~~~~--~~~~~~~~~~~~~dvvitty~~l~~~--~~~l~~~~~~~vIiDEaH~~kn~~-------s~~~~~~~~ 327 (429)
....+..... .... .....+..+++++|.+.+... ...+...++.+|||||||.+.... ..+......
T Consensus 93 ~~~~s~~~~~~~~~~~-~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~ 171 (607)
T PRK11057 93 ACLNSTQTREQQLEVM-AGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (607)
T ss_pred EEEcCCCCHHHHHHHH-HHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh
Confidence 4444433221 1111 122346788999998887642 234455578899999999985432 122223334
Q ss_pred ccCCcEEEEeCCccCCCHHHHHHHHhhhCC
Q psy10683 328 FKTTNRLLLTGTPLQNNLHELWALLNFLLP 357 (429)
Q Consensus 328 l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p 357 (429)
+.....+++|||+-.....++...+.+-.|
T Consensus 172 ~p~~~~v~lTAT~~~~~~~di~~~l~l~~~ 201 (607)
T PRK11057 172 FPTLPFMALTATADDTTRQDIVRLLGLNDP 201 (607)
T ss_pred CCCCcEEEEecCCChhHHHHHHHHhCCCCe
Confidence 456778999999988877788777765444
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.28 E-value=7.7e-11 Score=124.10 Aligned_cols=166 Identities=18% Similarity=0.252 Sum_probs=115.7
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~ 257 (429)
..+||.|.+++..++. +.+.++..++|.|||+.....+ +.. .+.++||+|. +++.++.+.+... +..
T Consensus 12 ~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpa--l~~----~g~~lVisPl~sL~~dq~~~l~~~--gi~ 79 (591)
T TIGR01389 12 DDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPA--LLL----KGLTVVISPLISLMKDQVDQLRAA--GVA 79 (591)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHH--HHc----CCcEEEEcCCHHHHHHHHHHHHHc--CCc
Confidence 3689999999987764 6789999999999998764322 222 4578999998 7778898888775 455
Q ss_pred eEEEeCChhhH--HHHHHhhcCCCCccEEEcchHHHHHH--hhhhhccCceEEEecCcccccCch-------hHHHHHHH
Q psy10683 258 AICLIGDQDAR--NAMIRDVMMPGEWDVCITSYEMCIRE--RGVFKKFNWRYLVIDEAHRIKNEK-------SKLSEIVR 326 (429)
Q Consensus 258 ~~~~~g~~~~~--~~~~~~~~~~~~~dvvitty~~l~~~--~~~l~~~~~~~vIiDEaH~~kn~~-------s~~~~~~~ 326 (429)
+..+.++.... .... .....+.++++++|.+.+... ...+......+|||||||.+.... ..+.....
T Consensus 80 ~~~~~s~~~~~~~~~~~-~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~ 158 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIE-KALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAE 158 (591)
T ss_pred EEEEeCCCCHHHHHHHH-HHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHH
Confidence 55565554322 2222 222346788999999988543 234556688999999999985422 12333344
Q ss_pred hccCCcEEEEeCCccCCCHHHHHHHHhhhCC
Q psy10683 327 EFKTTNRLLLTGTPLQNNLHELWALLNFLLP 357 (429)
Q Consensus 327 ~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p 357 (429)
.+.....+++|||+......++...+.+-.+
T Consensus 159 ~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~ 189 (591)
T TIGR01389 159 RFPQVPRIALTATADAETRQDIRELLRLADA 189 (591)
T ss_pred hCCCCCEEEEEeCCCHHHHHHHHHHcCCCCC
Confidence 4556669999999988888888877765444
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.28 E-value=7.9e-11 Score=127.80 Aligned_cols=159 Identities=20% Similarity=0.289 Sum_probs=108.7
Q ss_pred CCCChHHHHHHHHHHHHHHhcC--CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENG--INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP 254 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~ 254 (429)
+..+.|.|..++..+......+ .+.++..++|+|||.+++..+..... ....++|+||. .|..|..+.|.++++
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~---~g~qvlvLvPT~~LA~Q~~~~f~~~~~ 525 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL---DGKQVAVLVPTTLLAQQHFETFKERFA 525 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH---hCCeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 4578999999999998876654 36799999999999987644332222 13578999999 556778888988876
Q ss_pred C--CceEEEeCChh--hHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-c
Q psy10683 255 T--LRAICLIGDQD--ARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-K 329 (429)
Q Consensus 255 ~--~~~~~~~g~~~--~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~ 329 (429)
. .++..+.|... .+....... ..+..+|||+|...+.+.. .+ .+..+|||||+|++.. .....+..+ .
T Consensus 526 ~~~i~v~~Lsg~~~~~e~~~~~~~l-~~g~~dIVIGTp~ll~~~v-~f--~~L~llVIDEahrfgv---~~~~~L~~~~~ 598 (926)
T TIGR00580 526 NFPVTIELLSRFRSAKEQNEILKEL-ASGKIDILIGTHKLLQKDV-KF--KDLGLLIIDEEQRFGV---KQKEKLKELRT 598 (926)
T ss_pred cCCcEEEEEeccccHHHHHHHHHHH-HcCCceEEEchHHHhhCCC-Cc--ccCCEEEeecccccch---hHHHHHHhcCC
Confidence 5 44555655432 223322222 2357899999997664321 12 2457999999999743 334455555 3
Q ss_pred CCcEEEEeCCccCCCHH
Q psy10683 330 TTNRLLLTGTPLQNNLH 346 (429)
Q Consensus 330 ~~~r~~lTgTP~~n~~~ 346 (429)
....++|||||+...+.
T Consensus 599 ~~~vL~~SATpiprtl~ 615 (926)
T TIGR00580 599 SVDVLTLSATPIPRTLH 615 (926)
T ss_pred CCCEEEEecCCCHHHHH
Confidence 56789999999876654
No 45
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.26 E-value=1.5e-10 Score=118.15 Aligned_cols=155 Identities=16% Similarity=0.222 Sum_probs=104.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHH-HHHHhhhcc-----cCCCeEEEecc-chHHHHHHHHHhh
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISL-LGYMKHYRN-----IAGPHIVIVPK-STLLNWMNEFKKW 252 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~-~~~l~~~~~-----~~~~~LIV~P~-~ll~qW~~e~~~~ 252 (429)
.+.|+|.+++..++. +.+.|+..++|+|||+..+.. +..+..... ....+|||||. .|..||.+++..+
T Consensus 23 ~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 677999999987653 678999999999999886543 333322111 11257999998 7778999999887
Q ss_pred cC--CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCch--hHHHHHHH
Q psy10683 253 CP--TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNEK--SKLSEIVR 326 (429)
Q Consensus 253 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~ 326 (429)
.. ++++..++|......... ...+.++|+|+|.+.+..... .+.-...++|||||||++.... ..+...+.
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~---~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~ 175 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMM---KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLA 175 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHH---HHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHH
Confidence 64 356666676654433211 112567999999998865432 2223357899999999985533 22334455
Q ss_pred hccCC-cEEEEeCCcc
Q psy10683 327 EFKTT-NRLLLTGTPL 341 (429)
Q Consensus 327 ~l~~~-~r~~lTgTP~ 341 (429)
.+... ..+++|||+-
T Consensus 176 ~l~~~~q~l~~SAT~~ 191 (456)
T PRK10590 176 KLPAKRQNLLFSATFS 191 (456)
T ss_pred hCCccCeEEEEeCCCc
Confidence 55443 4799999974
No 46
>PTZ00424 helicase 45; Provisional
Probab=99.25 E-value=1.4e-10 Score=116.47 Aligned_cols=155 Identities=14% Similarity=0.194 Sum_probs=101.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC--C
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT--L 256 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~--~ 256 (429)
.+.|+|..++..+. ++.+.++..++|+|||+.++..+............+|||+|. .|..|+.+.+..+... .
T Consensus 50 ~~~~~Q~~ai~~i~----~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPIL----DGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 68899999998765 477889999999999987654333332222334568999998 6667777777766543 3
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCc--hhHHHHHHHhcc-CC
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNE--KSKLSEIVREFK-TT 331 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~l~-~~ 331 (429)
......|....+... ... ....+|+|+|.+.+..... .+.--.+++||+||+|++... .......+..+. ..
T Consensus 126 ~~~~~~g~~~~~~~~-~~~--~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~ 202 (401)
T PTZ00424 126 RCHACVGGTVVRDDI-NKL--KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDV 202 (401)
T ss_pred eEEEEECCcCHHHHH-HHH--cCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCc
Confidence 444455554333221 111 1346899999988754322 222335789999999998542 234455566663 35
Q ss_pred cEEEEeCCcc
Q psy10683 332 NRLLLTGTPL 341 (429)
Q Consensus 332 ~r~~lTgTP~ 341 (429)
..+++|||+-
T Consensus 203 ~~i~~SAT~~ 212 (401)
T PTZ00424 203 QVALFSATMP 212 (401)
T ss_pred EEEEEEecCC
Confidence 6789999974
No 47
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.25 E-value=1.6e-10 Score=117.31 Aligned_cols=164 Identities=14% Similarity=0.182 Sum_probs=106.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHH-HHHHhhhc---ccCCCeEEEecc-chHHHHHHHHHhhcC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISL-LGYMKHYR---NIAGPHIVIVPK-STLLNWMNEFKKWCP 254 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~-~~~l~~~~---~~~~~~LIV~P~-~ll~qW~~e~~~~~~ 254 (429)
.+.++|.+++..++ .+.+.++..++|+|||+.++.. +..+.... .....+||++|. .|..|+.+.+..+..
T Consensus 23 ~p~~iQ~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 23 RPTAIQAEAIPPAL----DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 57799999998766 3678899999999999886443 33332211 123468999998 577888887777653
Q ss_pred --CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCch--hHHHHHHHhc
Q psy10683 255 --TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNEK--SKLSEIVREF 328 (429)
Q Consensus 255 --~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~l 328 (429)
++++..+.|........ ....+..+|+|+|.+.+..... .+.....++||+||||++.... ......+..+
T Consensus 99 ~~~~~v~~~~gg~~~~~~~---~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~ 175 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHA---EVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAET 175 (434)
T ss_pred cCCcEEEEEECCCCHHHHH---HHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhC
Confidence 46777777765433221 1112467899999988865432 2223356789999999985432 2233333333
Q ss_pred c-CCcEEEEeCCccCCCHHHHHH
Q psy10683 329 K-TTNRLLLTGTPLQNNLHELWA 350 (429)
Q Consensus 329 ~-~~~r~~lTgTP~~n~~~dl~~ 350 (429)
. ....+++|||+-...+.++..
T Consensus 176 ~~~~q~~~~SAT~~~~~~~~~~~ 198 (434)
T PRK11192 176 RWRKQTLLFSATLEGDAVQDFAE 198 (434)
T ss_pred ccccEEEEEEeecCHHHHHHHHH
Confidence 3 234689999986544555443
No 48
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.25 E-value=2e-10 Score=120.79 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=104.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHH-HHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc---C
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI-SLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC---P 254 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i-~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~---~ 254 (429)
.+.|+|.+++..++. +...|+..++|+|||+..+ .++..+.. ......+||+||. .|..||.+++.++. +
T Consensus 28 ~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~-~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 28 KPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhh-ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 578999999987653 6788999999999998763 33433322 2233467999999 77789988877664 5
Q ss_pred CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCch--hHHHHHHHhccC
Q psy10683 255 TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNEK--SKLSEIVREFKT 330 (429)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~l~~ 330 (429)
++.+..++|......... .. ....+|+|+|...+..... .+.-.+..+|||||||.+.+.. ..+...+..+..
T Consensus 103 ~i~v~~~~gG~~~~~q~~-~l--~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~ 179 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLR-AL--RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE 179 (629)
T ss_pred CceEEEEECCcCHHHHHH-Hh--cCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCC
Confidence 778888887765433211 11 2457899999988865432 2223356789999999875432 334455566644
Q ss_pred -CcEEEEeCCc
Q psy10683 331 -TNRLLLTGTP 340 (429)
Q Consensus 331 -~~r~~lTgTP 340 (429)
...+++|||.
T Consensus 180 ~~q~llfSAT~ 190 (629)
T PRK11634 180 GHQTALFSATM 190 (629)
T ss_pred CCeEEEEEccC
Confidence 4568899996
No 49
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.24 E-value=8.3e-11 Score=119.76 Aligned_cols=158 Identities=20% Similarity=0.329 Sum_probs=116.5
Q ss_pred CCChHHHHHHHHHHHHHHhcCC--CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH-HHHHHHHHhhcC-
Q psy10683 179 GEMRDYQVRGLNWMISLYENGI--NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL-LNWMNEFKKWCP- 254 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~--~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll-~qW~~e~~~~~~- 254 (429)
.+|-..|..+++-+.....+.. +-+|..|+|+|||++++..+..... ......+.+|..++ .|-...+.+|++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---~G~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---AGYQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---cCCeeEEeccHHHHHHHHHHHHHHHhhh
Confidence 4677899999998888776665 4689999999999988665544433 24457888999777 568889999997
Q ss_pred -CCceEEEeCChhh--HHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-c-
Q psy10683 255 -TLRAICLIGDQDA--RNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-K- 329 (429)
Q Consensus 255 -~~~~~~~~g~~~~--~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~- 329 (429)
++++....|+.+. |+.. ......+..|+||-|+..+.....+ .+..+||+||-|++.- .+...++.- .
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~-l~~l~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFGV---~QR~~L~~KG~~ 410 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEI-LEQLASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFGV---HQRLALREKGEQ 410 (677)
T ss_pred cCCeEEEeecccchhHHHHH-HHHHhCCCCCEEEEcchhhhcceee---cceeEEEEeccccccH---HHHHHHHHhCCC
Confidence 4677777886543 3333 3334457899999999988655433 3567999999999854 233333333 4
Q ss_pred CCcEEEEeCCccCCCHH
Q psy10683 330 TTNRLLLTGTPLQNNLH 346 (429)
Q Consensus 330 ~~~r~~lTgTP~~n~~~ 346 (429)
..+.+.||||||+.++.
T Consensus 411 ~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 411 NPHVLVMTATPIPRTLA 427 (677)
T ss_pred CCcEEEEeCCCchHHHH
Confidence 58999999999999985
No 50
>PRK02362 ski2-like helicase; Provisional
Probab=99.24 E-value=1.8e-10 Score=124.18 Aligned_cols=158 Identities=22% Similarity=0.185 Sum_probs=107.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHH-HHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC-CC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS-LLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP-TL 256 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~-~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~-~~ 256 (429)
.|+|+|.+++... +..+.+.+++.++|+|||+.+.. ++..+. ..+++|+|+|. ++..|+.+++.++.+ +.
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~----~~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA----RGGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh----cCCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 6899999999742 44578999999999999998843 344332 25679999999 788899999987643 57
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCchh-HHH-HHHHhc----
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNEKS-KLS-EIVREF---- 328 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~-~~~~~l---- 328 (429)
++..+.|....... ..+..+|+|+|++.+..-... ..-...++||+||+|.+.+... ... ..+..+
T Consensus 96 ~v~~~tGd~~~~~~------~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~ 169 (737)
T PRK02362 96 RVGISTGDYDSRDE------WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN 169 (737)
T ss_pred EEEEEeCCcCcccc------ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC
Confidence 77788886543321 224578999999877443221 0012458999999999965332 121 222222
Q ss_pred cCCcEEEEeCCccCCCHHHHHHHH
Q psy10683 329 KTTNRLLLTGTPLQNNLHELWALL 352 (429)
Q Consensus 329 ~~~~r~~lTgTP~~n~~~dl~~ll 352 (429)
...+.++||||.- +..++...+
T Consensus 170 ~~~qii~lSATl~--n~~~la~wl 191 (737)
T PRK02362 170 PDLQVVALSATIG--NADELADWL 191 (737)
T ss_pred CCCcEEEEcccCC--CHHHHHHHh
Confidence 3456799999973 466665544
No 51
>COG4889 Predicted helicase [General function prediction only]
Probab=99.22 E-value=3.2e-11 Score=123.96 Aligned_cols=159 Identities=21% Similarity=0.279 Sum_probs=105.6
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc-C
Q psy10683 177 KGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC-P 254 (429)
Q Consensus 177 ~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~-~ 254 (429)
+..++||||..|+......+..+.+|-|-+.+|+|||.+++-+...+.. ..+|.++|+ +|+.|-.+|...-. -
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l 232 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKEL 232 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCc
Confidence 3468999999999999999988889999999999999999999887765 478999999 88888555443211 1
Q ss_pred CCceEEEeCC-hh------------------hHHHHH---HhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecC
Q psy10683 255 TLRAICLIGD-QD------------------ARNAMI---RDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDE 310 (429)
Q Consensus 255 ~~~~~~~~g~-~~------------------~~~~~~---~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDE 310 (429)
+++....... +. ....++ ........--||++||+.+..-.. ...--.|++||+||
T Consensus 233 ~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDE 312 (1518)
T COG4889 233 DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDE 312 (1518)
T ss_pred cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecc
Confidence 1222221111 10 001111 112233455699999999865433 33344799999999
Q ss_pred cccccCc------hhHHHHH--HHhccCCcEEEEeCCc
Q psy10683 311 AHRIKNE------KSKLSEI--VREFKTTNRLLLTGTP 340 (429)
Q Consensus 311 aH~~kn~------~s~~~~~--~~~l~~~~r~~lTgTP 340 (429)
||+--+. .+..++. -..+++..|+.|||||
T Consensus 313 AHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 313 AHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred hhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 9996321 1111111 1234677899999999
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.22 E-value=1.9e-10 Score=127.43 Aligned_cols=158 Identities=19% Similarity=0.273 Sum_probs=106.7
Q ss_pred CCChHHHHHHHHHHHHHHhcC--CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccch-HHHHHHHHHhhcCC
Q psy10683 179 GEMRDYQVRGLNWMISLYENG--INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKST-LLNWMNEFKKWCPT 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~l-l~qW~~e~~~~~~~ 255 (429)
..+.+.|.+++.-+....... .+.++..++|+|||.+++-.+..... ....+||+||... ..|..+.|.+.+..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 478899999999887766543 46799999999999987643322211 2457999999955 57788888876644
Q ss_pred --CceEEEeCCh--hhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-cC
Q psy10683 256 --LRAICLIGDQ--DARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-KT 330 (429)
Q Consensus 256 --~~~~~~~g~~--~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~~ 330 (429)
+++.++.|.. ..+...+.. ...+..+|+|+|++.+... +.-.+.+++||||+|++.. .....++.+ ..
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~-l~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~---~~~e~lk~l~~~ 748 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAE-AAEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGV---RHKERIKAMRAD 748 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHH-HHhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcch---hHHHHHHhcCCC
Confidence 4555555543 233322222 2235689999999877532 2223578999999999843 233445555 45
Q ss_pred CcEEEEeCCccCCCHH
Q psy10683 331 TNRLLLTGTPLQNNLH 346 (429)
Q Consensus 331 ~~r~~lTgTP~~n~~~ 346 (429)
...+++||||++..+.
T Consensus 749 ~qvLl~SATpiprtl~ 764 (1147)
T PRK10689 749 VDILTLTATPIPRTLN 764 (1147)
T ss_pred CcEEEEcCCCCHHHHH
Confidence 6789999999887653
No 53
>PRK00254 ski2-like helicase; Provisional
Probab=99.21 E-value=3.5e-10 Score=121.68 Aligned_cols=159 Identities=26% Similarity=0.254 Sum_probs=108.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC-CC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP-TL 256 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~-~~ 256 (429)
.|.|+|.+++.. .+..+.+.+++.++|+|||+.+ ++++..+.. ..+++|+|+|. .+..|+.+++..|.. +.
T Consensus 23 ~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~---~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~ 96 (720)
T PRK00254 23 ELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR---EGGKAVYLVPLKALAEEKYREFKDWEKLGL 96 (720)
T ss_pred CCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHHHHHHHHHhhcCC
Confidence 688999999963 2346788999999999999988 444444332 24578999999 777888888887642 46
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCc--hhHHHHHHHhc-cCC
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNE--KSKLSEIVREF-KTT 331 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~l-~~~ 331 (429)
++..+.|....... ..+..+|+|+|++.+..-... ..--+.++||+||+|.+... ...+...+..+ ...
T Consensus 97 ~v~~~~Gd~~~~~~------~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~ 170 (720)
T PRK00254 97 RVAMTTGDYDSTDE------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRA 170 (720)
T ss_pred EEEEEeCCCCCchh------hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCC
Confidence 77777776543321 124578999999887543221 00124679999999998643 23344445555 345
Q ss_pred cEEEEeCCccCCCHHHHHHHH
Q psy10683 332 NRLLLTGTPLQNNLHELWALL 352 (429)
Q Consensus 332 ~r~~lTgTP~~n~~~dl~~ll 352 (429)
+.+++|||.- +..++-..+
T Consensus 171 qiI~lSATl~--n~~~la~wl 189 (720)
T PRK00254 171 QILGLSATVG--NAEELAEWL 189 (720)
T ss_pred cEEEEEccCC--CHHHHHHHh
Confidence 6799999973 466665543
No 54
>KOG0384|consensus
Probab=99.20 E-value=3.8e-12 Score=134.89 Aligned_cols=60 Identities=48% Similarity=0.779 Sum_probs=55.5
Q ss_pred ccccccCCCCcccCCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccCCCc
Q psy10683 20 TIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKI 79 (429)
Q Consensus 20 ~~~~~~~~p~~~~~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~ 79 (429)
....+..+|.++.|..||+||++|+|||+++|+++.+|||||+||||||+|+|+++.+.+
T Consensus 355 ~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~ 414 (1373)
T KOG0384|consen 355 RFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLF 414 (1373)
T ss_pred hHHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHH
Confidence 466789999999999999999999999999999999999999999999999999986433
No 55
>PRK01172 ski2-like helicase; Provisional
Probab=99.20 E-value=4.2e-10 Score=120.38 Aligned_cols=157 Identities=25% Similarity=0.197 Sum_probs=102.8
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC-CC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP-TL 256 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~-~~ 256 (429)
..|+|+|.+++..+ ..+.+.+++.++|+|||+++...+..... ..+.+++|+|. ++..|+.+++.++.. +.
T Consensus 21 ~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~---~~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFL---AGLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHH---hCCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 46899999999864 45778999999999999987644433222 14578999999 777888888887643 45
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCchh-HHHH-HHH---hc-
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNEKS-KLSE-IVR---EF- 328 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s-~~~~-~~~---~l- 328 (429)
++....|........ ....+|+|+|++.+..-... ..-.++++||+||+|.+.+... .... .+. .+
T Consensus 94 ~v~~~~G~~~~~~~~------~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~ 167 (674)
T PRK01172 94 RVKISIGDYDDPPDF------IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN 167 (674)
T ss_pred eEEEEeCCCCCChhh------hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC
Confidence 666666755432211 13568999999876433211 1112467999999999864321 1222 222 22
Q ss_pred cCCcEEEEeCCccCCCHHHHHH
Q psy10683 329 KTTNRLLLTGTPLQNNLHELWA 350 (429)
Q Consensus 329 ~~~~r~~lTgTP~~n~~~dl~~ 350 (429)
...+.+++|||+- +..++-.
T Consensus 168 ~~~riI~lSATl~--n~~~la~ 187 (674)
T PRK01172 168 PDARILALSATVS--NANELAQ 187 (674)
T ss_pred cCCcEEEEeCccC--CHHHHHH
Confidence 3356799999973 4555544
No 56
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.18 E-value=9.7e-10 Score=102.91 Aligned_cols=233 Identities=19% Similarity=0.172 Sum_probs=140.5
Q ss_pred ccCCCChHHHHHHHHHHHHHHhc------CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHH
Q psy10683 176 IKGGEMRDYQVRGLNWMISLYEN------GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249 (429)
Q Consensus 176 ~~~~~Lr~~Q~~~v~~l~~~~~~------~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~ 249 (429)
+..+.|-+-|+++|-+..+..+. ..|-+|.|.+|.||-.++.++|..... ++..+++-|-+...|...-.+.+
T Consensus 33 ~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l-~Gr~r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 33 IDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL-RGRKRAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred HhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH-cCCCceEEEECChhhhhHHHHHH
Confidence 45678999999999988777653 445688999999999999988865544 33333444445567777666666
Q ss_pred HhhcCC-CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh-------hhhcc------Cc-eEEEecCcccc
Q psy10683 250 KKWCPT-LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG-------VFKKF------NW-RYLVIDEAHRI 314 (429)
Q Consensus 250 ~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~-------~l~~~------~~-~~vIiDEaH~~ 314 (429)
...... +.+..+..-+.. .. ..-+..|+++||..+..... .+..+ +| .+||+||||+.
T Consensus 112 ~DIG~~~i~v~~l~~~~~~------~~-~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 112 RDIGADNIPVHPLNKFKYG------DI-IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHhCCCcccceechhhccC------cC-CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 654322 222222111100 00 11244699999999987742 12211 22 47888999999
Q ss_pred cCchh------HHHHHHHhc----cCCcEEEEeCCccCCCHHHHHHHHhhh---C-CCCCCChHHHHhhhcccccCCChh
Q psy10683 315 KNEKS------KLSEIVREF----KTTNRLLLTGTPLQNNLHELWALLNFL---L-PDIFSSSDDFDSWFNTEEFMGDHS 380 (429)
Q Consensus 315 kn~~s------~~~~~~~~l----~~~~r~~lTgTP~~n~~~dl~~ll~fl---~-p~~~~~~~~f~~~~~~~~~~~~~~ 380 (429)
+|..+ +...++..| ..-+.+.+|||.... +..|- .+.-| . ..+|.+..+|...+.. +...
T Consensus 185 kn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~Nma-Ym~RLGLWG~gtpf~~~~~f~~a~~~----gGv~ 258 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMA-YMSRLGLWGPGTPFPDFDDFLEAMEK----GGVG 258 (303)
T ss_pred CCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cceee-eeeeccccCCCCCCCCHHHHHHHHHh----cCch
Confidence 98655 455555444 555788999998732 22221 11111 1 1245566667665553 3344
Q ss_pred HHHHHHHHhhh--hhhhhchhHHhhcCCCceEEEEEEcCCHHHHHHHHH
Q psy10683 381 IIERLHSVLKP--FLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTK 427 (429)
Q Consensus 381 ~~~~L~~~l~~--~~lRr~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y~~ 427 (429)
.++-+..-|+. .+++|.-+ +-.-...++.++||+.|.++|++
T Consensus 259 amE~vA~dlKa~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 259 AMEMVAMDLKARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred HHHHHHHHHHhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 45544444432 34444332 23345778999999999999975
No 57
>PRK09401 reverse gyrase; Reviewed
Probab=99.16 E-value=7.2e-10 Score=123.25 Aligned_cols=130 Identities=13% Similarity=0.234 Sum_probs=92.6
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC-
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT- 255 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~- 255 (429)
|..++++|..++..++ .+.+.++..++|+|||..++..+..+.. ....+|||+|. .|+.|+.+.+.++...
T Consensus 78 G~~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~f~l~~~~~l~~---~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLL----LGESFAIIAPTGVGKTTFGLVMSLYLAK---KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 4578899998886554 4778899999999999754443333322 25678999999 7889999999988754
Q ss_pred -CceEEEeCCh----hhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCccccc
Q psy10683 256 -LRAICLIGDQ----DARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIK 315 (429)
Q Consensus 256 -~~~~~~~g~~----~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~k 315 (429)
..+....|.. +.+..... ....+.++|+|+|.+.+.+....+....++++|+||||++-
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~-~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLE-RLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHH-HHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhh
Confidence 3344444332 22222221 22235689999999999887776666679999999999974
No 58
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.16 E-value=7.5e-10 Score=114.59 Aligned_cols=155 Identities=13% Similarity=0.150 Sum_probs=103.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHH-HHHHhhh------cccCCCeEEEecc-chHHHHHHHHHh
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISL-LGYMKHY------RNIAGPHIVIVPK-STLLNWMNEFKK 251 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~-~~~l~~~------~~~~~~~LIV~P~-~ll~qW~~e~~~ 251 (429)
.+.|+|..++..++ .|.+.|+..++|+|||+..+-. +..+... ......+|||+|. .|..|+.+++..
T Consensus 143 ~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 143 FPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred CCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 68899999998765 4788999999999999876543 3333221 1123467999999 677888888887
Q ss_pred hcCC--CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCc--hhHHHHHH
Q psy10683 252 WCPT--LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNE--KSKLSEIV 325 (429)
Q Consensus 252 ~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~--~s~~~~~~ 325 (429)
+... +++....|........ ... ....+|+|+|.+.+..-.. .+.-....+||+||||++... .....+.+
T Consensus 219 l~~~~~~~~~~~~gG~~~~~q~-~~l--~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~ 295 (518)
T PLN00206 219 LGKGLPFKTALVVGGDAMPQQL-YRI--QQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIF 295 (518)
T ss_pred HhCCCCceEEEEECCcchHHHH-HHh--cCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHH
Confidence 7643 4455555544322221 111 2457899999988754432 122235678999999998543 33455566
Q ss_pred HhccCCcEEEEeCCcc
Q psy10683 326 REFKTTNRLLLTGTPL 341 (429)
Q Consensus 326 ~~l~~~~r~~lTgTP~ 341 (429)
..+.....+++|||.-
T Consensus 296 ~~l~~~q~l~~SATl~ 311 (518)
T PLN00206 296 QALSQPQVLLFSATVS 311 (518)
T ss_pred HhCCCCcEEEEEeeCC
Confidence 6677788899999973
No 59
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.16 E-value=4.9e-10 Score=115.04 Aligned_cols=157 Identities=15% Similarity=0.206 Sum_probs=103.1
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHH-HHHHHhhhccc------CCCeEEEecc-chHHHHHHHHH
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS-LLGYMKHYRNI------AGPHIVIVPK-STLLNWMNEFK 250 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~-~~~~l~~~~~~------~~~~LIV~P~-~ll~qW~~e~~ 250 (429)
..+.++|.+++..++ .|.+.|+..++|+|||+..+- ++..+...... ....|||+|. .|..|+.+++.
T Consensus 108 ~~~~~iQ~~ai~~~~----~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYTL----AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 368899999997655 478899999999999987643 33333332111 3467999999 77788888888
Q ss_pred hhcC--CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCchh--HHHHH
Q psy10683 251 KWCP--TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNEKS--KLSEI 324 (429)
Q Consensus 251 ~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s--~~~~~ 324 (429)
.+.. +.++..++|..+..... .. ......+|+|+|.+++...... ..--...+|||||+|++.+... ...+.
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~~-~~-~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i 261 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQL-KQ-LEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQI 261 (475)
T ss_pred HhhccCCCEEEEEEccCChHHHH-HH-HhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHH
Confidence 7754 45677777764432221 11 1224578999999998654321 1112467899999999865332 23344
Q ss_pred HHhcc---CCcEEEEeCCcc
Q psy10683 325 VREFK---TTNRLLLTGTPL 341 (429)
Q Consensus 325 ~~~l~---~~~r~~lTgTP~ 341 (429)
+..+. ....+++|||..
T Consensus 262 ~~~~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 262 IRQTPRKEERQTLLFSATFT 281 (475)
T ss_pred HHhCCCCCCceEEEEEeecC
Confidence 44442 345799999963
No 60
>KOG0388|consensus
Probab=99.15 E-value=8e-12 Score=125.65 Aligned_cols=66 Identities=48% Similarity=0.918 Sum_probs=55.9
Q ss_pred cccCCCCcccCCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccCCCcchhhhhhhhhccccccc
Q psy10683 23 SFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKIDRFDYLLKQTEIFSHFM 96 (429)
Q Consensus 23 ~~~~~p~~~~~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~r~~~Ll~q~~i~~~~~ 96 (429)
.-..+|..+. ..|+.||++|++||..++.+|.+|||||+||||||+|.|+++++ |.....++++|+
T Consensus 556 ~tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAh-------LaE~~nIwGPFL 621 (1185)
T KOG0388|consen 556 RTVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAH-------LAETHNIWGPFL 621 (1185)
T ss_pred eeccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHH-------HHHhccCCCceE
Confidence 3456777776 49999999999999999999999999999999999999999863 555556666666
No 61
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.14 E-value=1.2e-09 Score=110.46 Aligned_cols=155 Identities=14% Similarity=0.145 Sum_probs=101.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHH-HHHhhhcc------cCCCeEEEecc-chHHHHHHHHHh
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL-GYMKHYRN------IAGPHIVIVPK-STLLNWMNEFKK 251 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~-~~l~~~~~------~~~~~LIV~P~-~ll~qW~~e~~~ 251 (429)
.+.|.|.+++..++ .+.+.++..++|+|||+..+..+ ..+..... ....+|||+|. .|..|+.+++..
T Consensus 30 ~pt~iQ~~aip~il----~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTL----AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHh----CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 56699999997655 47789999999999999765433 33322111 12357999999 777889888877
Q ss_pred hcC--CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCch--hHHHHHH
Q psy10683 252 WCP--TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNEK--SKLSEIV 325 (429)
Q Consensus 252 ~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~--s~~~~~~ 325 (429)
+.. ++++..++|....... .... ...++|+|+|.+.+..... .+.--...++|+||||++-... ......+
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~-~~~l--~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~ 182 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQ-LKVL--ESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLF 182 (423)
T ss_pred HhccCCceEEEEECCCCHHHH-HHHh--cCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHH
Confidence 653 4677777776543322 1111 2457999999998865432 2333457899999999985433 2333344
Q ss_pred HhccC---CcEEEEeCCcc
Q psy10683 326 REFKT---TNRLLLTGTPL 341 (429)
Q Consensus 326 ~~l~~---~~r~~lTgTP~ 341 (429)
..+.. ...+++|||.-
T Consensus 183 ~~~~~~~~~~~~l~SAT~~ 201 (423)
T PRK04837 183 RRMPPANQRLNMLFSATLS 201 (423)
T ss_pred HhCCCccceeEEEEeccCC
Confidence 44532 23588999974
No 62
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.14 E-value=1.4e-09 Score=113.66 Aligned_cols=155 Identities=18% Similarity=0.155 Sum_probs=103.1
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHH-HHHhhhc------ccCCCeEEEecc-chHHHHHHHHHh
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL-GYMKHYR------NIAGPHIVIVPK-STLLNWMNEFKK 251 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~-~~l~~~~------~~~~~~LIV~P~-~ll~qW~~e~~~ 251 (429)
.+.|.|..++..++ .+.+.|+..++|+|||+..+..+ ..+.... .....+|||+|. .|..|+.+++.+
T Consensus 31 ~ptpiQ~~~ip~~l----~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVAL----PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHHh----CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 57799999998766 47789999999999998875543 3332211 112468999999 777889999888
Q ss_pred hcCC--CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh---hhccCceEEEecCcccccCch--hHHHHH
Q psy10683 252 WCPT--LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV---FKKFNWRYLVIDEAHRIKNEK--SKLSEI 324 (429)
Q Consensus 252 ~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~~--s~~~~~ 324 (429)
+... +++..++|........ .. ....++|+|+|.+.+...... +.-....+|||||||++.... ..+...
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~-~~--l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~i 183 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQR-EL--LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFL 183 (572)
T ss_pred HhccCCceEEEEECCCCHHHHH-HH--HhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHH
Confidence 8743 5666777765433221 11 124578999999888654322 223356789999999985422 223334
Q ss_pred HHhcc---CCcEEEEeCCcc
Q psy10683 325 VREFK---TTNRLLLTGTPL 341 (429)
Q Consensus 325 ~~~l~---~~~r~~lTgTP~ 341 (429)
+..+. ....+++|||.-
T Consensus 184 l~~lp~~~~~q~ll~SATl~ 203 (572)
T PRK04537 184 LRRMPERGTRQTLLFSATLS 203 (572)
T ss_pred HHhcccccCceEEEEeCCcc
Confidence 44443 345789999964
No 63
>PTZ00110 helicase; Provisional
Probab=99.14 E-value=9.8e-10 Score=114.25 Aligned_cols=154 Identities=20% Similarity=0.221 Sum_probs=101.1
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHH-HHHHHHhhhc----ccCCCeEEEecc-chHHHHHHHHHhhc
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI-SLLGYMKHYR----NIAGPHIVIVPK-STLLNWMNEFKKWC 253 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i-~~~~~l~~~~----~~~~~~LIV~P~-~ll~qW~~e~~~~~ 253 (429)
.+.|+|..++..++ .+.+.|+..++|+|||+..+ .++..+.... .....+|||||. .|..|+.+++.++.
T Consensus 152 ~pt~iQ~~aip~~l----~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIAL----SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHHh----cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 58899999987655 47789999999999999764 3333333211 112236889999 77788999999887
Q ss_pred CC--CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCch--hHHHHHHHh
Q psy10683 254 PT--LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNEK--SKLSEIVRE 327 (429)
Q Consensus 254 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~ 327 (429)
.. +++.+.+|........ ... ....+|+|+|.+.+...... ..-....+|||||||++.... ..+.+.+..
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~-~~l--~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~ 304 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQI-YAL--RRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQ 304 (545)
T ss_pred cccCccEEEEeCCCCHHHHH-HHH--HcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHh
Confidence 53 5566666654433221 111 13568999999887654321 112246789999999986533 234455555
Q ss_pred ccC-CcEEEEeCCc
Q psy10683 328 FKT-TNRLLLTGTP 340 (429)
Q Consensus 328 l~~-~~r~~lTgTP 340 (429)
+.. ...+++|||.
T Consensus 305 ~~~~~q~l~~SAT~ 318 (545)
T PTZ00110 305 IRPDRQTLMWSATW 318 (545)
T ss_pred CCCCCeEEEEEeCC
Confidence 533 4568899996
No 64
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.12 E-value=2e-09 Score=117.65 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=100.3
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHH-HHHHHhhhc-----ccCCCeEEEecc-chHHHHHHH---
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS-LLGYMKHYR-----NIAGPHIVIVPK-STLLNWMNE--- 248 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~-~~~~l~~~~-----~~~~~~LIV~P~-~ll~qW~~e--- 248 (429)
..|+|+|.+++..+ ..+.++++..++|+|||+.++. ++..+.... .....+|+|+|. .|..|+.+.
T Consensus 31 ~~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 36899999999765 3578999999999999998754 344443311 112347899999 555665543
Q ss_pred ----HHhhc-------CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh------hhhccCceEEEecCc
Q psy10683 249 ----FKKWC-------PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG------VFKKFNWRYLVIDEA 311 (429)
Q Consensus 249 ----~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~------~l~~~~~~~vIiDEa 311 (429)
+..++ +++++.+.+|......... ......+|+|||.+.+..... .+. +.++||+||+
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~---~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~--~l~~VVIDE~ 181 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQK---MLKKPPHILITTPESLAILLNSPKFREKLR--TVKWVIVDEI 181 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHH---HHhCCCCEEEecHHHHHHHhcChhHHHHHh--cCCEEEEech
Confidence 32332 3567778888654432211 111356899999998853321 122 4578999999
Q ss_pred ccccCch--hHHHHHH---Hhc--cCCcEEEEeCCccCCCHHHHHH
Q psy10683 312 HRIKNEK--SKLSEIV---REF--KTTNRLLLTGTPLQNNLHELWA 350 (429)
Q Consensus 312 H~~kn~~--s~~~~~~---~~l--~~~~r~~lTgTP~~n~~~dl~~ 350 (429)
|.+.+.. ......+ ..+ ....++++|||.- ++.++..
T Consensus 182 H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~--~~~~va~ 225 (876)
T PRK13767 182 HSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIE--PLEEVAK 225 (876)
T ss_pred hhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC--CHHHHHH
Confidence 9986432 2222222 222 3456899999973 3555443
No 65
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.11 E-value=1.8e-09 Score=114.72 Aligned_cols=155 Identities=16% Similarity=0.149 Sum_probs=105.0
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~ 257 (429)
..|.++|.++++.+.... .+...++...+|+|||...+..+..... ..+.+||++|. .+..|+.+.|.+.++ ..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~---~g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLA---QGKQALVLVPEIALTPQMLARFRARFG-AP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 478999999998886543 3456888999999999998776654433 24578999999 677999999998874 56
Q ss_pred eEEEeCChhh--HHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccC--chhH------HHHHHHh
Q psy10683 258 AICLIGDQDA--RNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKN--EKSK------LSEIVRE 327 (429)
Q Consensus 258 ~~~~~g~~~~--~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn--~~s~------~~~~~~~ 327 (429)
+.+++|.... +...... ...+..+|||.|...+. +.-.+.++|||||+|...- .... .......
T Consensus 218 v~~~~s~~s~~~r~~~~~~-~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~ 291 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRK-AKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAK 291 (679)
T ss_pred EEEEECCCCHHHHHHHHHH-HHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhh
Confidence 7777776433 2222222 22356789999987653 2223578999999998632 1111 1111122
Q ss_pred ccCCcEEEEeCCccCCC
Q psy10683 328 FKTTNRLLLTGTPLQNN 344 (429)
Q Consensus 328 l~~~~r~~lTgTP~~n~ 344 (429)
......+++||||...+
T Consensus 292 ~~~~~~il~SATps~~s 308 (679)
T PRK05580 292 LENIPVVLGSATPSLES 308 (679)
T ss_pred ccCCCEEEEcCCCCHHH
Confidence 35567899999996433
No 66
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.11 E-value=3e-11 Score=131.16 Aligned_cols=75 Identities=67% Similarity=0.988 Sum_probs=62.4
Q ss_pred ChhhHHHHHHhccccC--CCccccccCCCCcccCCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccCC
Q psy10683 2 TEQEEDEELLANANTE--GKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGP 77 (429)
Q Consensus 2 ~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~ 77 (429)
+|.+||.+.+...... +...+.+..+|..+. +.|||||++|++||+.++.++.||||||+||||||+|+|++++.
T Consensus 135 ~~~~ed~e~~~~~~~~~~~~~~~~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~ 211 (1033)
T PLN03142 135 TEEEEDEEYLKEEEDGLGGSGGTRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGY 211 (1033)
T ss_pred cccccchHHHHhHHhhccccCCceeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHH
Confidence 4666776666654432 445677888999998 59999999999999999999999999999999999999998753
No 67
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.10 E-value=9.2e-10 Score=118.94 Aligned_cols=167 Identities=17% Similarity=0.167 Sum_probs=109.1
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~ 257 (429)
..+||+|.++|..++ .|...++.+++|.|||+...--+ +.. .+.+|||+|. +|+.++...+... ++.
T Consensus 459 ~sFRp~Q~eaI~aiL----~GrDVLVimPTGSGKSLcYQLPA--L~~----~GiTLVISPLiSLmqDQV~~L~~~--GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATM----SGYDVFVLMPTGGGKSLTYQLPA--LIC----PGITLVISPLVSLIQDQIMNLLQA--NIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCccHHHHHHHHH--HHc----CCcEEEEeCHHHHHHHHHHHHHhC--CCe
Confidence 479999999998765 47889999999999998753322 221 4679999999 6666566555542 455
Q ss_pred eEEEeCChhh--HHHHHHhh-cCCCCccEEEcchHHHHHHh---hhh---h-ccCceEEEecCcccccCchh-------H
Q psy10683 258 AICLIGDQDA--RNAMIRDV-MMPGEWDVCITSYEMCIRER---GVF---K-KFNWRYLVIDEAHRIKNEKS-------K 320 (429)
Q Consensus 258 ~~~~~g~~~~--~~~~~~~~-~~~~~~dvvitty~~l~~~~---~~l---~-~~~~~~vIiDEaH~~kn~~s-------~ 320 (429)
...+.+.... ....+... ...+.++++++|.+.+.... ..+ . .....+|||||||.+..... .
T Consensus 527 Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~ 606 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQG 606 (1195)
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHH
Confidence 5555554332 22222222 12367899999999875321 112 1 12367899999999854321 1
Q ss_pred HHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCC
Q psy10683 321 LSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLP 357 (429)
Q Consensus 321 ~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p 357 (429)
+......+.....++||||.......|+...|.+..+
T Consensus 607 L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~ 643 (1195)
T PLN03137 607 LGILKQKFPNIPVLALTATATASVKEDVVQALGLVNC 643 (1195)
T ss_pred HHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCc
Confidence 1122334566778999999988888888887765443
No 68
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.09 E-value=1.2e-09 Score=116.24 Aligned_cols=161 Identities=22% Similarity=0.149 Sum_probs=110.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc-CCCc
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC-PTLR 257 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~-~~~~ 257 (429)
.|.+.|..++...+ ..+.|.+++.++|+|||+++...+..-.. ...++.+.|||. +|..+=.++|.+|- -+++
T Consensus 31 el~~~qq~av~~~~---~~~~N~li~aPTgsGKTlIA~lai~~~l~--~~~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGL---LSDENVLISAPTGSGKTLIALLAILSTLL--EGGGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhccc---cCCCcEEEEcCCCCchHHHHHHHHHHHHH--hcCCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 78899999986443 33789999999999999998766543332 125789999999 67777788888443 3688
Q ss_pred eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhh--hccCceEEEecCcccccCch------hHHHHHHHhcc
Q psy10683 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF--KKFNWRYLVIDEAHRIKNEK------SKLSEIVREFK 329 (429)
Q Consensus 258 ~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l--~~~~~~~vIiDEaH~~kn~~------s~~~~~~~~l~ 329 (429)
+..+.|..+... .....++|+|+||+.+-.-.... -....++|||||+|.+.... +..+++...-.
T Consensus 106 V~~~TgD~~~~~------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~ 179 (766)
T COG1204 106 VGISTGDYDLDD------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE 179 (766)
T ss_pred EEEecCCcccch------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc
Confidence 999998876443 22367899999999885332211 22256799999999997651 22233322223
Q ss_pred CCcEEEEeCCccCCCHHHHHHHHh
Q psy10683 330 TTNRLLLTGTPLQNNLHELWALLN 353 (429)
Q Consensus 330 ~~~r~~lTgTP~~n~~~dl~~ll~ 353 (429)
..+.++||||- .|..|+-..++
T Consensus 180 ~~rivgLSATl--pN~~evA~wL~ 201 (766)
T COG1204 180 LIRIVGLSATL--PNAEEVADWLN 201 (766)
T ss_pred ceEEEEEeeec--CCHHHHHHHhC
Confidence 35778999994 36666655443
No 69
>KOG0387|consensus
Probab=99.06 E-value=3.1e-11 Score=123.29 Aligned_cols=59 Identities=39% Similarity=0.603 Sum_probs=49.1
Q ss_pred cccccCCCCcccCCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccCCCcc
Q psy10683 21 IVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKID 80 (429)
Q Consensus 21 ~~~~~~~p~~~~~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~ 80 (429)
....-..|..+.. .|.|||++||+||+.+++++.||||||+||||||+|+|+|+++..+
T Consensus 192 ~~~~~~vPg~I~~-~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~ 250 (923)
T KOG0387|consen 192 LEGGFKVPGFIWS-KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHH 250 (923)
T ss_pred ccccccccHHHHH-HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhh
Confidence 3333445666543 8999999999999999999999999999999999999999875433
No 70
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.04 E-value=5.3e-09 Score=112.20 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=101.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHH-HHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc-CCC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS-LLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC-PTL 256 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~-~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~-~~~ 256 (429)
.|.+||.+++..+. .|.+.++..++|+|||+..+- ++..+.. ......|+|+|. .|..|-..++.++. .++
T Consensus 36 ~p~~~Q~~ai~~il----~G~nvvv~apTGSGKTla~~LPiL~~l~~--~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i 109 (742)
T TIGR03817 36 RPWQHQARAAELAH----AGRHVVVATGTASGKSLAYQLPVLSALAD--DPRATALYLAPTKALAADQLRAVRELTLRGV 109 (742)
T ss_pred cCCHHHHHHHHHHH----CCCCEEEECCCCCcHHHHHHHHHHHHHhh--CCCcEEEEEcChHHHHHHHHHHHHHhccCCe
Confidence 68899999998664 488899999999999987643 3444433 223468999999 55567777777765 356
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--------hhhccCceEEEecCcccccCc-hhHHHHHHHh
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--------VFKKFNWRYLVIDEAHRIKNE-KSKLSEIVRE 327 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--------~l~~~~~~~vIiDEaH~~kn~-~s~~~~~~~~ 327 (429)
++..+.|........ ......+|+|+|.+++....- .+. +.++|||||+|.+.+. .+.....+..
T Consensus 110 ~v~~~~Gdt~~~~r~----~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vViDEah~~~g~fg~~~~~il~r 183 (742)
T TIGR03817 110 RPATYDGDTPTEERR----WAREHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVVIDECHSYRGVFGSHVALVLRR 183 (742)
T ss_pred EEEEEeCCCCHHHHH----HHhcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEEEeChhhccCccHHHHHHHHHH
Confidence 777788865433221 111346899999998863211 122 4579999999998652 2333333333
Q ss_pred c--------cCCcEEEEeCCccCCCHHHH
Q psy10683 328 F--------KTTNRLLLTGTPLQNNLHEL 348 (429)
Q Consensus 328 l--------~~~~r~~lTgTP~~n~~~dl 348 (429)
+ .....+++|||. ++..++
T Consensus 184 L~ri~~~~g~~~q~i~~SATi--~n~~~~ 210 (742)
T TIGR03817 184 LRRLCARYGASPVFVLASATT--ADPAAA 210 (742)
T ss_pred HHHHHHhcCCCCEEEEEecCC--CCHHHH
Confidence 3 224578999995 334444
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.03 E-value=2.1e-09 Score=116.09 Aligned_cols=152 Identities=18% Similarity=0.265 Sum_probs=103.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHH-HHHhhhcccCCCeEEEeccchHHH-HHHHHHhhc---C
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL-GYMKHYRNIAGPHIVIVPKSTLLN-WMNEFKKWC---P 254 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~-~~l~~~~~~~~~~LIV~P~~ll~q-W~~e~~~~~---~ 254 (429)
.|+.||.+|++.+. +|++.++...||+|||...+-.+ ..+.. ....+.|+|-|...|.| ..+.|.++. |
T Consensus 70 ~lY~HQ~~A~~~~~----~G~~vvVtTgTgSGKTe~FllPIld~~l~--~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~ 143 (851)
T COG1205 70 RLYSHQVDALRLIR----EGRNVVVTTGTGSGKTESFLLPILDHLLR--DPSARALLLYPTNALANDQAERLRELISDLP 143 (851)
T ss_pred cccHHHHHHHHHHH----CCCCEEEECCCCCchhHHHHHHHHHHHhh--CcCccEEEEechhhhHhhHHHHHHHHHHhCC
Confidence 49999999997664 47899999999999999875544 33333 33447799999965554 777777765 3
Q ss_pred -CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh------hhhhccCceEEEecCcccccC-chhHHHHHHH
Q psy10683 255 -TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER------GVFKKFNWRYLVIDEAHRIKN-EKSKLSEIVR 326 (429)
Q Consensus 255 -~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~------~~l~~~~~~~vIiDEaH~~kn-~~s~~~~~~~ 326 (429)
.+++..|.|....... .....+..+|++|+|+|+-... -....-++.+||+||+|.++. ..|...-.++
T Consensus 144 ~~v~~~~y~Gdt~~~~r---~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llR 220 (851)
T COG1205 144 GKVTFGRYTGDTPPEER---RAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLR 220 (851)
T ss_pred CcceeeeecCCCChHHH---HHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHH
Confidence 4567778776544322 1223367799999999986521 111122488999999999965 4455555555
Q ss_pred hc--------cCCcEEEEeCCc
Q psy10683 327 EF--------KTTNRLLLTGTP 340 (429)
Q Consensus 327 ~l--------~~~~r~~lTgTP 340 (429)
+| .....++.|||-
T Consensus 221 RL~~~~~~~~~~~q~i~~SAT~ 242 (851)
T COG1205 221 RLLRRLRRYGSPLQIICTSATL 242 (851)
T ss_pred HHHHHHhccCCCceEEEEeccc
Confidence 55 134458888884
No 72
>KOG0389|consensus
Probab=99.00 E-value=1.4e-10 Score=118.44 Aligned_cols=53 Identities=49% Similarity=0.957 Sum_probs=48.3
Q ss_pred ccCCCCcc-cCCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccC
Q psy10683 24 FENSPFYI-KGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76 (429)
Q Consensus 24 ~~~~p~~~-~~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~ 76 (429)
+..+|..+ .+.+|+|||..|||||..++.++.+|||||+||||||+|+|+|++
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFla 440 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLA 440 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHH
Confidence 45578777 467999999999999999999999999999999999999999985
No 73
>KOG0386|consensus
Probab=99.00 E-value=1.8e-10 Score=120.35 Aligned_cols=59 Identities=54% Similarity=0.968 Sum_probs=54.3
Q ss_pred CCccccccCCCCcccCCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccC
Q psy10683 18 GKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76 (429)
Q Consensus 18 ~~~~~~~~~~p~~~~~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~ 76 (429)
+.-...+..+|..+.|+.|++||++||.||.+++.+..+|||||+||||||+|+|+++.
T Consensus 377 H~I~E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLit 435 (1157)
T KOG0386|consen 377 HPIKENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLIT 435 (1157)
T ss_pred chhhhccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHH
Confidence 33456678999999999999999999999999999999999999999999999999984
No 74
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.97 E-value=1e-08 Score=114.35 Aligned_cols=130 Identities=12% Similarity=0.211 Sum_probs=92.2
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTL 256 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~ 256 (429)
+..+.++|..++..++ .|.+.++..++|+|||..++.++..+.. ....+|||+|. .|..|+.+.+.+++...
T Consensus 76 g~~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTTFGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred CCCCcHHHHHHHHHHh----CCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 4468899999887655 4778889999999999866555444432 24578999999 77788999998887532
Q ss_pred --c---eEEEeCChhhHH--HHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccC
Q psy10683 257 --R---AICLIGDQDARN--AMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKN 316 (429)
Q Consensus 257 --~---~~~~~g~~~~~~--~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn 316 (429)
. +..++|...... ..... ...+.++|+|+|...+......+.. .++++|+||||++-.
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~-l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMER-IENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHH-HhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 2 224566543222 22222 2235689999999999877666554 799999999999854
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.96 E-value=1.6e-08 Score=99.75 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhcC-CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc----C--C
Q psy10683 184 YQVRGLNWMISLYENG-INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC----P--T 255 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~-~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~----~--~ 255 (429)
||.++++.+.. .. ...++..++|+|||..++..+. . ...++++++|. ++..+|.+.+..++ + +
T Consensus 1 hQ~~~~~~~~~---~~~~~~~i~apTGsGKT~~~~~~~l--~----~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQS---KDADIIFNTAPTGAGKTLAWLTPLL--H----GENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHc---CCCCEEEEECCCCCCHHHHHHHHHH--H----cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 78888876654 22 2357799999999987754432 1 13467999998 67788888877766 2 3
Q ss_pred CceEEEeCChhhHH-HH----------------HHhhcCCCCccEEEcchHHHHHHhhhh---h-------ccCceEEEe
Q psy10683 256 LRAICLIGDQDARN-AM----------------IRDVMMPGEWDVCITSYEMCIRERGVF---K-------KFNWRYLVI 308 (429)
Q Consensus 256 ~~~~~~~g~~~~~~-~~----------------~~~~~~~~~~dvvitty~~l~~~~~~l---~-------~~~~~~vIi 308 (429)
..+..+.|...... .. .+........++++|+++++..-.... . -....+||+
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 44555555421110 00 011112345689999998886322110 0 135689999
Q ss_pred cCcccccCchh-------HHHHHHHhc-cCCcEEEEeCCccC
Q psy10683 309 DEAHRIKNEKS-------KLSEIVREF-KTTNRLLLTGTPLQ 342 (429)
Q Consensus 309 DEaH~~kn~~s-------~~~~~~~~l-~~~~r~~lTgTP~~ 342 (429)
||+|.+..... .....+... ...+.++|||||-.
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~ 193 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP 193 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH
Confidence 99999864221 112222222 23588999999843
No 76
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.91 E-value=1.2e-08 Score=109.88 Aligned_cols=158 Identities=19% Similarity=0.269 Sum_probs=112.4
Q ss_pred CCChHHHHHHHHHHHHHHhcCCC--eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH-HHHHHHhhcCC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGIN--GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN-WMNEFKKWCPT 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~--~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q-W~~e~~~~~~~ 255 (429)
..--|-|..|++-+...+.++.- -+++.++|.|||-+|+-.+-... ...+-+.|+||+.+|.| -.+.|+.-+.+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV---~~GKQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV---MDGKQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh---cCCCeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 35568899999999998887774 68999999999999875442211 22467889999988865 55666655555
Q ss_pred CceEEE--e--CChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhcc-C
Q psy10683 256 LRAICL--I--GDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFK-T 330 (429)
Q Consensus 256 ~~~~~~--~--g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~-~ 330 (429)
+.+-+- . -+.+..+..+.. ...++.||||-|+..+.++..+ .+..++||||=|++.- +.-..++.++ .
T Consensus 670 fPV~I~~LSRF~s~kE~~~il~~-la~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFGV---k~KEkLK~Lr~~ 742 (1139)
T COG1197 670 FPVRIEVLSRFRSAKEQKEILKG-LAEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFGV---KHKEKLKELRAN 742 (1139)
T ss_pred CCeeEEEecccCCHHHHHHHHHH-HhcCCccEEEechHhhCCCcEE---ecCCeEEEechhhcCc---cHHHHHHHHhcc
Confidence 444332 2 233333343333 3458999999999998776543 3567999999999854 3455677774 4
Q ss_pred CcEEEEeCCccCCCHH
Q psy10683 331 TNRLLLTGTPLQNNLH 346 (429)
Q Consensus 331 ~~r~~lTgTP~~n~~~ 346 (429)
...+-||||||+.++.
T Consensus 743 VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 743 VDVLTLSATPIPRTLN 758 (1139)
T ss_pred CcEEEeeCCCCcchHH
Confidence 5788899999999875
No 77
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.89 E-value=2.3e-08 Score=102.70 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=87.6
Q ss_pred eecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChh--hHHHHHHhhcCCCC
Q psy10683 204 LADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQD--ARNAMIRDVMMPGE 280 (429)
Q Consensus 204 lad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~ 280 (429)
|..++|+|||.+.+.++..... ..+.+||++|. ++..|+.+.|++.++ ..+.++++... .+....... ..+.
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~---~g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~~~-~~g~ 76 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLA---LGKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWRKV-KNGE 76 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHHHH-HcCC
Confidence 5568999999998877765543 24578999999 788999999998774 45667776543 232222222 2456
Q ss_pred ccEEEcchHHHHHHhhhhhccCceEEEecCccccc--CchhH------HHHHHHhccCCcEEEEeCCccC
Q psy10683 281 WDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIK--NEKSK------LSEIVREFKTTNRLLLTGTPLQ 342 (429)
Q Consensus 281 ~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~k--n~~s~------~~~~~~~l~~~~r~~lTgTP~~ 342 (429)
.+|||+|...+.. .-.+.++|||||.|... ..... +............+++||||..
T Consensus 77 ~~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 77 ILVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred CCEEECChHHHcC-----cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCH
Confidence 7899999987632 22356899999999963 22111 2223334466778999999963
No 78
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.85 E-value=3.8e-08 Score=97.34 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=86.1
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChhhH-----------H
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQDAR-----------N 269 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~~~-----------~ 269 (429)
.++..++|+|||..++..+..... ....+++++++|. +++.|+.+.+..++.. ++..+++..... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~-~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIK-SQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh-hCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 367899999999998877665443 3445678999998 8888899999888754 444444433210 0
Q ss_pred HHHH----hhcCCCCccEEEcchHHHHHHhhh--------hhccCceEEEecCcccccCchh-HHHHHHHhc--cCCcEE
Q psy10683 270 AMIR----DVMMPGEWDVCITSYEMCIRERGV--------FKKFNWRYLVIDEAHRIKNEKS-KLSEIVREF--KTTNRL 334 (429)
Q Consensus 270 ~~~~----~~~~~~~~dvvitty~~l~~~~~~--------l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l--~~~~r~ 334 (429)
.... ........+++++|.+.+...... +......+||+||+|.+..... .....+..+ .....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 0000 000112356999999987654322 2223347899999999865322 233333333 245679
Q ss_pred EEeCCcc
Q psy10683 335 LLTGTPL 341 (429)
Q Consensus 335 ~lTgTP~ 341 (429)
++|||+-
T Consensus 160 ~~SATlp 166 (358)
T TIGR01587 160 LMSATLP 166 (358)
T ss_pred EEecCch
Confidence 9999963
No 79
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.85 E-value=2.4e-08 Score=109.46 Aligned_cols=141 Identities=18% Similarity=0.205 Sum_probs=92.5
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCC
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMP 278 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 278 (429)
.+|++.|-.|+|||++++-++..+... .....+++|+-. -|-.|-.++|..+........ ...+...+......
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~~- 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLED- 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHhc-
Confidence 469999999999999999888877775 333344555544 777888999988765433322 22222222222221
Q ss_pred CCccEEEcchHHHHHHhhh----hhccCceEEEecCcccccCchhHHHHHHH-hccCCcEEEEeCCccCCCHHH
Q psy10683 279 GEWDVCITSYEMCIRERGV----FKKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHE 347 (429)
Q Consensus 279 ~~~dvvitty~~l~~~~~~----l~~~~~~~vIiDEaH~~kn~~s~~~~~~~-~l~~~~r~~lTgTP~~n~~~d 347 (429)
..-.|+|||-+.|...... ......-+||+||||+... ....+.+. .+....-+++||||+...-.+
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~--G~~~~~~~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY--GELAKLLKKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc--cHHHHHHHHHhccceEEEeeCCcccccccc
Confidence 2345999999998766533 2334566889999999644 33333333 445577899999999765444
No 80
>KOG0391|consensus
Probab=98.84 E-value=7e-10 Score=116.92 Aligned_cols=51 Identities=59% Similarity=1.058 Sum_probs=45.3
Q ss_pred cCCCCcccCCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccC
Q psy10683 25 ENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76 (429)
Q Consensus 25 ~~~p~~~~~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~ 76 (429)
...|..+. ++||.||..|+.||..+|.++.+|||||+||||||+|+|++++
T Consensus 606 tpvPsLLr-GqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllA 656 (1958)
T KOG0391|consen 606 TPVPSLLR-GQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLA 656 (1958)
T ss_pred cCchHHHH-HHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHH
Confidence 34455554 5999999999999999999999999999999999999999875
No 81
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.83 E-value=1.2e-07 Score=88.98 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=108.8
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTL 256 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~ 256 (429)
+|+|-++|..+-+.++..+.+....|+..-+|.|||-++...+..... ..+.+.|..|. -++-.-...++.-+++.
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~---~G~~vciASPRvDVclEl~~Rlk~aF~~~ 171 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN---QGGRVCIASPRVDVCLELYPRLKQAFSNC 171 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh---cCCeEEEecCcccchHHHHHHHHHhhccC
Confidence 689999999999999999999999999999999999998887766544 36678888888 56666777788888888
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCccccc-CchhHHHHHHHhc--cCCcE
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIK-NEKSKLSEIVREF--KTTNR 333 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~k-n~~s~~~~~~~~l--~~~~r 333 (429)
.+...+|..+..- + ..-||-||++.++-. ..||++||||...+- ..+-.+..++++- ....+
T Consensus 172 ~I~~Lyg~S~~~f---r------~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~ 236 (441)
T COG4098 172 DIDLLYGDSDSYF---R------APLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGAT 236 (441)
T ss_pred CeeeEecCCchhc---c------ccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHhhcccCce
Confidence 9999998776431 1 122555556655432 258999999999872 1223344444443 44568
Q ss_pred EEEeCCccC
Q psy10683 334 LLLTGTPLQ 342 (429)
Q Consensus 334 ~~lTgTP~~ 342 (429)
+.|||||-.
T Consensus 237 IylTATp~k 245 (441)
T COG4098 237 IYLTATPTK 245 (441)
T ss_pred EEEecCChH
Confidence 999999963
No 82
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.79 E-value=4.5e-08 Score=100.06 Aligned_cols=168 Identities=20% Similarity=0.266 Sum_probs=122.2
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~ 257 (429)
..+|+-|.++|..++. +.+++...++|.||++..- +..+.. .|.||||.|. +|+..-++.+.... +.
T Consensus 16 ~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQ--iPAll~----~G~TLVVSPLiSLM~DQV~~l~~~G--i~ 83 (590)
T COG0514 16 ASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQ--IPALLL----EGLTLVVSPLISLMKDQVDQLEAAG--IR 83 (590)
T ss_pred cccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhh--hHHHhc----CCCEEEECchHHHHHHHHHHHHHcC--ce
Confidence 3688999999987765 6889999999999997431 222222 6799999999 77777888777753 34
Q ss_pred eEEEeC--ChhhHHHHHHhhcCCCCccEEEcchHHHHHH--hhhhhccCceEEEecCcccccC-------chhHHHHHHH
Q psy10683 258 AICLIG--DQDARNAMIRDVMMPGEWDVCITSYEMCIRE--RGVFKKFNWRYLVIDEAHRIKN-------EKSKLSEIVR 326 (429)
Q Consensus 258 ~~~~~g--~~~~~~~~~~~~~~~~~~dvvitty~~l~~~--~~~l~~~~~~~vIiDEaH~~kn-------~~s~~~~~~~ 326 (429)
+....+ +.+.+..... ....+..+++..+.+.+... .+.+......+++|||||.+.. ....+.....
T Consensus 84 A~~lnS~l~~~e~~~v~~-~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~ 162 (590)
T COG0514 84 AAYLNSTLSREERQQVLN-QLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRA 162 (590)
T ss_pred eehhhcccCHHHHHHHHH-HHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHh
Confidence 433333 3344444333 33446789999999998766 3556778899999999999844 3345555666
Q ss_pred hccCCcEEEEeCCccCCCHHHHHHHHhhhCCCC
Q psy10683 327 EFKTTNRLLLTGTPLQNNLHELWALLNFLLPDI 359 (429)
Q Consensus 327 ~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~ 359 (429)
.+....+++||||--...-.|+...|..-.+..
T Consensus 163 ~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~ 195 (590)
T COG0514 163 GLPNPPVLALTATATPRVRDDIREQLGLQDANI 195 (590)
T ss_pred hCCCCCEEEEeCCCChHHHHHHHHHhcCCCcce
Confidence 667778999999998888899999887765543
No 83
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.78 E-value=8.4e-08 Score=102.16 Aligned_cols=157 Identities=19% Similarity=0.118 Sum_probs=95.2
Q ss_pred CCCChHHHHHHHHHHHHHHhcCC-CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC-
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGI-NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP- 254 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~-~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~- 254 (429)
|....|||.+++..++ .|. ..++..++|+|||..+.+++..+..........+++||. .+..|-.+++.++..
T Consensus 13 G~~PtpiQ~~~i~~il----~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~ 88 (844)
T TIGR02621 13 GYSPFPWQLSLAERFV----AGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGER 88 (844)
T ss_pred CCCCCHHHHHHHHHHH----cCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHH
Confidence 4457899999998654 355 356678999999975543333222212223344446688 677777777766552
Q ss_pred ------------------------CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh-----------hh
Q psy10683 255 ------------------------TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV-----------FK 299 (429)
Q Consensus 255 ------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~-----------l~ 299 (429)
.+++..++|........... ....+|||.|.+.+.+..-. +.
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l---~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 89 LPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLD---PHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLH 165 (844)
T ss_pred hcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhc---CCCCcEEEECHHHHcCCccccccccccccccch
Confidence 25667778876544332222 24568999998877553210 00
Q ss_pred ---ccCceEEEecCcccccCchhHHHHHHHhc--cC----CcEEEEeCCcc
Q psy10683 300 ---KFNWRYLVIDEAHRIKNEKSKLSEIVREF--KT----TNRLLLTGTPL 341 (429)
Q Consensus 300 ---~~~~~~vIiDEaH~~kn~~s~~~~~~~~l--~~----~~r~~lTgTP~ 341 (429)
-.+-.++|+||||........+.+++..+ .. ...+++|||+-
T Consensus 166 ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p 216 (844)
T TIGR02621 166 AGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSR 216 (844)
T ss_pred hhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCC
Confidence 12356899999994444334444444433 11 35799999984
No 84
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.77 E-value=6.7e-08 Score=80.79 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=72.9
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcC
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMM 277 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (429)
++.--+|-.-+|.|||..++--+. .+.-....++||+.|.-++. +|+.+...+..+... .+...+ ..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~--~~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~~~~-t~~~~~-------~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIV--REAIKRRLRVLVLAPTRVVA---EEMYEALKGLPVRFH-TNARMR-------TH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHH--HHHHHTT--EEEEESSHHHH---HHHHHHTTTSSEEEE-STTSS----------
T ss_pred CCceeEEecCCCCCCcccccHHHH--HHHHHccCeEEEecccHHHH---HHHHHHHhcCCcccC-ceeeec-------cc
Confidence 344457778899999997765332 22234467899999997765 444555544443322 211111 11
Q ss_pred CCCccEEEcchHHHHHHh-hhhhccCceEEEecCcccccCchhHHHHH-HHhc---cCCcEEEEeCCccC
Q psy10683 278 PGEWDVCITSYEMCIRER-GVFKKFNWRYLVIDEAHRIKNEKSKLSEI-VREF---KTTNRLLLTGTPLQ 342 (429)
Q Consensus 278 ~~~~dvvitty~~l~~~~-~~l~~~~~~~vIiDEaH~~kn~~s~~~~~-~~~l---~~~~r~~lTgTP~~ 342 (429)
.++.-|-+++|.++.... +.....+|++||+||||-. ++.+...+- +..+ .....++|||||--
T Consensus 70 ~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred cCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 244568889998876643 3444568999999999994 444444332 2222 22367999999953
No 85
>PRK14701 reverse gyrase; Provisional
Probab=98.76 E-value=1.4e-07 Score=107.86 Aligned_cols=131 Identities=13% Similarity=0.264 Sum_probs=90.7
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC--
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP-- 254 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~-- 254 (429)
|..+++.|..++..++. +...++..++|+|||...+.++..+. .....+|||+|. .|+.|..+.+..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~---~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA---LKGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH---hcCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 44688999999976664 77889999999999984332222221 123468999999 777888888888764
Q ss_pred --CCceEEEeCChhhHHHH-HHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCccccc
Q psy10683 255 --TLRAICLIGDQDARNAM-IRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIK 315 (429)
Q Consensus 255 --~~~~~~~~g~~~~~~~~-~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~k 315 (429)
+.++..++|........ .......+.++|+|+|.+.+......+....++++|+||||.+-
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceecc
Confidence 34566677765433221 11122345789999999988765544444678999999999984
No 86
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.76 E-value=9.9e-08 Score=102.40 Aligned_cols=140 Identities=17% Similarity=0.147 Sum_probs=88.9
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH-HHHHH-----Hhhc----CC--CceEEEeCCh---
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN-WMNEF-----KKWC----PT--LRAICLIGDQ--- 265 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q-W~~e~-----~~~~----~~--~~~~~~~g~~--- 265 (429)
+..+.+++|+|||.+++.++..+.. ......+|||||...+.. ...-+ +.|+ .+ ....+|.+..
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~-~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQ-KYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH-HcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 4567999999999999999988866 334578999999955433 32221 2333 22 3444554332
Q ss_pred hhH---HHHHHhhcC-----CCCccEEEcchHHHHHHhh--hh------hc--cC-------ceEEEecCcccccCchhH
Q psy10683 266 DAR---NAMIRDVMM-----PGEWDVCITSYEMCIRERG--VF------KK--FN-------WRYLVIDEAHRIKNEKSK 320 (429)
Q Consensus 266 ~~~---~~~~~~~~~-----~~~~dvvitty~~l~~~~~--~l------~~--~~-------~~~vIiDEaH~~kn~~s~ 320 (429)
..| ...+.+... .....|+|+|.+++.++.. .. .. .. --+||+||.|++.. ..+
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~k 218 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DNK 218 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-chH
Confidence 111 111222222 2257899999998876421 00 11 12 24799999999965 244
Q ss_pred HHHHHHhccCCcEEEEeCCccC
Q psy10683 321 LSEIVREFKTTNRLLLTGTPLQ 342 (429)
Q Consensus 321 ~~~~~~~l~~~~r~~lTgTP~~ 342 (429)
.++++..++..+.+..|||--.
T Consensus 219 ~~~~i~~lnpl~~lrysAT~~~ 240 (986)
T PRK15483 219 FYQAIEALKPQMIIRFGATFPD 240 (986)
T ss_pred HHHHHHhcCcccEEEEeeecCC
Confidence 6788899999999999999643
No 87
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.75 E-value=1e-07 Score=100.90 Aligned_cols=166 Identities=18% Similarity=0.185 Sum_probs=106.9
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHH-HHHHHhhhc-ccC---CCeEEEeccchHHH-HHHHHHhh
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS-LLGYMKHYR-NIA---GPHIVIVPKSTLLN-WMNEFKKW 252 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~-~~~~l~~~~-~~~---~~~LIV~P~~ll~q-W~~e~~~~ 252 (429)
..++|+|..|+..+. .|.+.++..++|+|||..|+- ++..+.... +.. =.+|-|.|.-.|.+ -...+..|
T Consensus 21 ~~~t~~Q~~a~~~i~----~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIH----SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHh----CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 578999999987554 689999999999999998854 444444431 111 23588899866654 33444444
Q ss_pred c--CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHH------hhhhhccCceEEEecCcccccCc--hhHHH
Q psy10683 253 C--PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRE------RGVFKKFNWRYLVIDEAHRIKNE--KSKLS 322 (429)
Q Consensus 253 ~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~------~~~l~~~~~~~vIiDEaH~~kn~--~s~~~ 322 (429)
. -++.+-+-+|...... ++......+||+|||.+++.-- ...|.. -.+|||||.|.+.+. .++++
T Consensus 97 ~~~~G~~v~vRhGDT~~~e---r~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~--vr~VIVDEiHel~~sKRG~~Ls 171 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSE---KQKMLKNPPHILITTPESLAILLNSPKFRELLRD--VRYVIVDEIHALAESKRGVQLA 171 (814)
T ss_pred HHHcCCccceecCCCChHH---hhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcC--CcEEEeehhhhhhccccchhhh
Confidence 3 2556666677554332 2233345689999999998643 233444 457999999999653 24444
Q ss_pred HHHHhc---c-CCcEEEEeCCccCCCHHHHHHHHhhhCCC
Q psy10683 323 EIVREF---K-TTNRLLLTGTPLQNNLHELWALLNFLLPD 358 (429)
Q Consensus 323 ~~~~~l---~-~~~r~~lTgTP~~n~~~dl~~ll~fl~p~ 358 (429)
-.+.+| . .-.|++||||=- ++.+ +..||.+.
T Consensus 172 l~LeRL~~l~~~~qRIGLSATV~--~~~~---varfL~g~ 206 (814)
T COG1201 172 LSLERLRELAGDFQRIGLSATVG--PPEE---VAKFLVGF 206 (814)
T ss_pred hhHHHHHhhCcccEEEeehhccC--CHHH---HHHHhcCC
Confidence 444444 3 357999999943 4444 45566554
No 88
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.65 E-value=2.5e-07 Score=97.53 Aligned_cols=160 Identities=16% Similarity=0.182 Sum_probs=99.7
Q ss_pred CccccCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHH----------HHHhhh--cccCCCeEEEecc-
Q psy10683 173 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL----------GYMKHY--RNIAGPHIVIVPK- 239 (429)
Q Consensus 173 p~~~~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~----------~~l~~~--~~~~~~~LIV~P~- 239 (429)
|.......|++.|.+.=..++..+.+++..|+..++|+|||.+.=.++ ..+... ....++++|++|.
T Consensus 153 ~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~Prr 232 (675)
T PHA02653 153 PEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRV 232 (675)
T ss_pred CCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHH
Confidence 434445688998888888888888889999999999999998742222 111110 1234578999999
Q ss_pred chHHHHHHHHHhhc-----CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccc
Q psy10683 240 STLLNWMNEFKKWC-----PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRI 314 (429)
Q Consensus 240 ~ll~qW~~e~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~ 314 (429)
.+..|...++.+.. ++..+.+.+|+..... ... .....++++.|..... ..+ ....+|||||||..
T Consensus 233 eLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~--~~t--~~k~~~Ilv~T~~L~l---~~L--~~v~~VVIDEaHEr 303 (675)
T PHA02653 233 ALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDEL--INT--NPKPYGLVFSTHKLTL---NKL--FDYGTVIIDEVHEH 303 (675)
T ss_pred HHHHHHHHHHHHHhCccccCCceEEEEECCcchHH--hhc--ccCCCCEEEEeCcccc---ccc--ccCCEEEccccccC
Confidence 55566777776533 3455666677654211 111 1124578888744211 112 24679999999997
Q ss_pred cCchhHHHHHHHhccC--CcEEEEeCCcc
Q psy10683 315 KNEKSKLSEIVREFKT--TNRLLLTGTPL 341 (429)
Q Consensus 315 kn~~s~~~~~~~~l~~--~~r~~lTgTP~ 341 (429)
....-.....++.+.. +..+++|||+-
T Consensus 304 ~~~~DllL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 304 DQIGDIIIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred ccchhHHHHHHHHhhhhcCEEEEEccCCc
Confidence 5544444444444322 35799999983
No 89
>KOG0952|consensus
Probab=98.62 E-value=2.9e-07 Score=97.30 Aligned_cols=174 Identities=18% Similarity=0.245 Sum_probs=104.1
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHH-HHHhhh------cccCCCeEEEecc-chHHHHHHHHHhh
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL-GYMKHY------RNIAGPHIVIVPK-STLLNWMNEFKKW 252 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~-~~l~~~------~~~~~~~LIV~P~-~ll~qW~~e~~~~ 252 (429)
|..-|-++.- -.|+.+.|+|++.++|+|||..+.-.| ..+... ....-+++-|+|. +|...-.+.+.+-
T Consensus 111 fN~iQS~vFp---~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kk 187 (1230)
T KOG0952|consen 111 FNRIQSEVFP---VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKK 187 (1230)
T ss_pred HHHHHHHhhh---hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhh
Confidence 3334444443 346678899999999999999885544 444431 1234577889998 4444344444444
Q ss_pred cC--CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHH---HH----hhhhhccCceEEEecCcccccCchhHH--
Q psy10683 253 CP--TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI---RE----RGVFKKFNWRYLVIDEAHRIKNEKSKL-- 321 (429)
Q Consensus 253 ~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~---~~----~~~l~~~~~~~vIiDEaH~~kn~~s~~-- 321 (429)
+. ++.+..+.|.....+.- ....+|+|||.+..- +. ...+. ...+|||||.|.+..+....
T Consensus 188 l~~~gi~v~ELTGD~ql~~te------i~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlE 259 (1230)
T KOG0952|consen 188 LAPLGISVRELTGDTQLTKTE------IADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLE 259 (1230)
T ss_pred cccccceEEEecCcchhhHHH------HHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccchHH
Confidence 43 57788888866543221 134578888877541 11 11111 34689999999997765443
Q ss_pred ---HHHHHhc----cCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhh
Q psy10683 322 ---SEIVREF----KTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWF 370 (429)
Q Consensus 322 ---~~~~~~l----~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~ 370 (429)
++.++.. ..-+.++||||-- |..| +..||..++....-.|...|
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlP--N~eD---vA~fL~vn~~~glfsFd~~y 310 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLP--NYED---VARFLRVNPYAGLFSFDQRY 310 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCC--CHHH---HHHHhcCCCccceeeecccc
Confidence 3333222 4556789999931 3444 45677776655555555555
No 90
>KOG0350|consensus
Probab=98.60 E-value=2.2e-07 Score=91.05 Aligned_cols=142 Identities=20% Similarity=0.211 Sum_probs=96.8
Q ss_pred CCChHHHHHHHHHHHHHHhc-----CCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHh
Q psy10683 179 GEMRDYQVRGLNWMISLYEN-----GINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKK 251 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~-----~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~ 251 (429)
..+.|-|...+-|++..... ++...++.++|+|||+.. |-++..+......+-+.+||+|. .|..|-.+.|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 36889999999999876652 334567899999999864 44444444433445677999999 666788999999
Q ss_pred hcCCC--ceEEEeCChhhHHHHHHhh--cCCCCccEEEcchHHHHHHhhhhhcc---CceEEEecCcccccCchhH
Q psy10683 252 WCPTL--RAICLIGDQDARNAMIRDV--MMPGEWDVCITSYEMCIRERGVFKKF---NWRYLVIDEAHRIKNEKSK 320 (429)
Q Consensus 252 ~~~~~--~~~~~~g~~~~~~~~~~~~--~~~~~~dvvitty~~l~~~~~~l~~~---~~~~vIiDEaH~~kn~~s~ 320 (429)
|++.. .|....|..+-+.....-. ......||+|+|...+.........+ +..++|||||.++.+...+
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ 313 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQ 313 (620)
T ss_pred hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHH
Confidence 99764 4444455444333222111 12235799999999998876643333 4678999999999765443
No 91
>PRK09694 helicase Cas3; Provisional
Probab=98.57 E-value=1.2e-06 Score=94.91 Aligned_cols=167 Identities=14% Similarity=0.111 Sum_probs=97.9
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccch-HHHHHHHHHh----h
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKST-LLNWMNEFKK----W 252 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~l-l~qW~~e~~~----~ 252 (429)
+...+|+|..+... ...++-.||-.+||.|||..++.++..+.. .+..+.+++..|.-. ..+-.+.+.+ .
T Consensus 284 ~~~p~p~Q~~~~~~----~~~pgl~ileApTGsGKTEAAL~~A~~l~~-~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 284 GYQPRQLQTLVDAL----PLQPGLTIIEAPTGSGKTEAALAYAWRLID-QGLADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCCChHHHHHHHhh----ccCCCeEEEEeCCCCCHHHHHHHHHHHHHH-hCCCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 55789999877431 123444688999999999999988776655 344567788889854 4445555543 4
Q ss_pred cCCCceEEEeCChhhHHHH---H----------------HhhcC-----CCCccEEEcchHHHHHHhh-----hhh--cc
Q psy10683 253 CPTLRAICLIGDQDARNAM---I----------------RDVMM-----PGEWDVCITSYEMCIRERG-----VFK--KF 301 (429)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~---~----------------~~~~~-----~~~~dvvitty~~l~~~~~-----~l~--~~ 301 (429)
++...+.+.+|........ . ..+.. .--.+|+|+|.+.+..-.- .++ ..
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 4555677777654311100 0 01110 0114799999887763321 111 12
Q ss_pred CceEEEecCcccccCchhHH-HHHHHhc--cCCcEEEEeCCccCCCHHHHH
Q psy10683 302 NWRYLVIDEAHRIKNEKSKL-SEIVREF--KTTNRLLLTGTPLQNNLHELW 349 (429)
Q Consensus 302 ~~~~vIiDEaH~~kn~~s~~-~~~~~~l--~~~~r~~lTgTP~~n~~~dl~ 349 (429)
.-.+|||||+|.+-...... ...++.+ .....++||||+-..-..+|.
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~ 489 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLL 489 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHH
Confidence 23589999999984322222 2333332 345689999998544333443
No 92
>KOG0392|consensus
Probab=98.54 E-value=1.9e-08 Score=107.16 Aligned_cols=44 Identities=50% Similarity=0.914 Sum_probs=41.7
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccCC
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGP 77 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~ 77 (429)
..||.||.+||+|+.++.+-+..|||||+||||||+|+|+++++
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAs 1017 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILAS 1017 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999998764
No 93
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.51 E-value=1e-06 Score=92.98 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=89.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc-hHHHHHHHHHhhcC--CC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS-TLLNWMNEFKKWCP--TL 256 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~-ll~qW~~e~~~~~~--~~ 256 (429)
.++|||...+..+.. +.|+|..+.+|.|||++++..+. +.. .....++||+|.. |..||.+++..++. ++
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~-l~a--L~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLY-LNA--LTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHH-HHh--hcCCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 578888887765542 45679999999999998765432 222 1234589999995 55667766655432 44
Q ss_pred ceEEEeCC-hh--hHHHHHHhhcCCCCccEEEcchHHHHHHh--h-------hhhccCceEEEecCcccccCchhHHHHH
Q psy10683 257 RAICLIGD-QD--ARNAMIRDVMMPGEWDVCITSYEMCIRER--G-------VFKKFNWRYLVIDEAHRIKNEKSKLSEI 324 (429)
Q Consensus 257 ~~~~~~g~-~~--~~~~~~~~~~~~~~~dvvitty~~l~~~~--~-------~l~~~~~~~vIiDEaH~~kn~~s~~~~~ 324 (429)
.+.+..+. .. ....... .. ...||+++|...+..+. . ......+.++|+||||.+--..
T Consensus 141 sv~~~~~~s~~~~~~~~~rr-~~--y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe------ 211 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKR-KI--YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS------ 211 (762)
T ss_pred cEEEEECCCCccccCHHHHH-Hh--CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc------
Confidence 55444432 11 1111111 11 35789999998884331 1 1112357799999999973322
Q ss_pred HHhccCCcEEEEeCCccCCCHHHHHHHH
Q psy10683 325 VREFKTTNRLLLTGTPLQNNLHELWALL 352 (429)
Q Consensus 325 ~~~l~~~~r~~lTgTP~~n~~~dl~~ll 352 (429)
+...+++||.|-.. ..+|...
T Consensus 212 -----artpliisg~~~~~--~~~y~~~ 232 (762)
T TIGR03714 212 -----AQTPLVISGAPRVQ--SNLYHIA 232 (762)
T ss_pred -----CcCCeeeeCCCccc--hHHHHHH
Confidence 33457888876433 3455555
No 94
>KOG0331|consensus
Probab=98.49 E-value=1.3e-06 Score=87.92 Aligned_cols=153 Identities=21% Similarity=0.317 Sum_probs=103.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHH-HHHHHHhhh----cccCCC-eEEEecc-chHHHHHHHHHhh
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI-SLLGYMKHY----RNIAGP-HIVIVPK-STLLNWMNEFKKW 252 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i-~~~~~l~~~----~~~~~~-~LIV~P~-~ll~qW~~e~~~~ 252 (429)
.+-|-|..++-.++ .|..++..+.+|+|||+.-+ -.+.++... ....+| +||++|. .|-.|-..++..+
T Consensus 113 ~PtpIQaq~wp~~l----~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIAL----SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceec----cCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 44566766655444 37788999999999998753 334444331 123345 7899999 6666777888888
Q ss_pred cCCCc--eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccc--cCchhHHHHHHH
Q psy10683 253 CPTLR--AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRI--KNEKSKLSEIVR 326 (429)
Q Consensus 253 ~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~--kn~~s~~~~~~~ 326 (429)
...+. ..+++|......... +. ....||+|+|...+..... .+.--...++|+|||.++ .....++-+.+.
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~-~l--~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLR-DL--ERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILS 265 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHH-HH--hcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHH
Confidence 76544 777777655443322 21 1457899999998876543 233346779999999998 456678888999
Q ss_pred hc-cCCc-EEEEeCC
Q psy10683 327 EF-KTTN-RLLLTGT 339 (429)
Q Consensus 327 ~l-~~~~-r~~lTgT 339 (429)
.+ ...+ .++.|+|
T Consensus 266 ~i~~~~rQtlm~saT 280 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSAT 280 (519)
T ss_pred hcCCCcccEEEEeee
Confidence 99 4444 6778888
No 95
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.48 E-value=1.8e-06 Score=97.47 Aligned_cols=142 Identities=20% Similarity=0.215 Sum_probs=84.9
Q ss_pred eecCCCCCHHHHHHH-HHHHHhhhc---------ccCCCeEEEeccchH-HHHHHHHHh--------------hcCCCce
Q psy10683 204 LADEMGLGKTLQTIS-LLGYMKHYR---------NIAGPHIVIVPKSTL-LNWMNEFKK--------------WCPTLRA 258 (429)
Q Consensus 204 lad~~GlGKT~~~i~-~~~~l~~~~---------~~~~~~LIV~P~~ll-~qW~~e~~~--------------~~~~~~~ 258 (429)
+..++|+|||+.+.- ++..+.... .....+|+|+|.--| .|-.++++. ..+++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 356899999998854 555554321 123467999999544 443343332 1245778
Q ss_pred EEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh-----hhhccCceEEEecCcccccCch--hHHHHHHHh---c
Q psy10683 259 ICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG-----VFKKFNWRYLVIDEAHRIKNEK--SKLSEIVRE---F 328 (429)
Q Consensus 259 ~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~-----~l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~---l 328 (429)
.+.+|......... ......+|+|||.+.+..-.. .+. +.++|||||+|.+.+.+ +.+...+.. +
T Consensus 81 ~vrtGDt~~~eR~r---ll~~ppdILVTTPEsL~~LLtsk~r~~L~--~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l 155 (1490)
T PRK09751 81 GIRTGDTPAQERSK---LTRNPPDILITTPESLYLMLTSRARETLR--GVETVIIDEVHAVAGSKRGAHLALSLERLDAL 155 (1490)
T ss_pred EEEECCCCHHHHHH---HhcCCCCEEEecHHHHHHHHhhhhhhhhc--cCCEEEEecHHHhcccccccHHHHHHHHHHHh
Confidence 88888765433211 111356899999998854321 222 45689999999997542 222223322 2
Q ss_pred --cCCcEEEEeCCccCCCHHHHHHHH
Q psy10683 329 --KTTNRLLLTGTPLQNNLHELWALL 352 (429)
Q Consensus 329 --~~~~r~~lTgTP~~n~~~dl~~ll 352 (429)
....+|++|||- +++.++...+
T Consensus 156 ~~~~~QrIgLSATI--~n~eevA~~L 179 (1490)
T PRK09751 156 LHTSAQRIGLSATV--RSASDVAAFL 179 (1490)
T ss_pred CCCCCeEEEEEeeC--CCHHHHHHHh
Confidence 235689999996 3466655433
No 96
>KOG1002|consensus
Probab=98.48 E-value=6e-08 Score=94.78 Aligned_cols=65 Identities=42% Similarity=0.570 Sum_probs=49.3
Q ss_pred ccccccCCCCcccCCcccHHHHHHHHHHHHhHh-cCcccchhhcccccchhhhhhccCCCcchhhhh
Q psy10683 20 TIVSFENSPFYIKGGEMRDYQVRGLNWMISLYE-NGINGILADEMGLGKTLQTISLLGPKIDRFDYL 85 (429)
Q Consensus 20 ~~~~~~~~p~~~~~~~l~~~q~~g~~~~~~~~~-~~~~~~l~~~~~~~k~~~~~~~~~~~~~r~~~L 85 (429)
.+..-.+||..+. ..|.|||++|+.|+..... .-.||||||+||+|||+|+|+++.....+-+.|
T Consensus 170 ~i~e~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~ra~tL 235 (791)
T KOG1002|consen 170 VIAERAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDRAPTL 235 (791)
T ss_pred hhhhcccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccccCCee
Confidence 3444456666554 4899999999999988776 336899999999999999999876555444433
No 97
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.40 E-value=4.3e-06 Score=79.99 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHH-HHhhhcc--cCCCeEEEecc-chHHHHHHHHHhh
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG-YMKHYRN--IAGPHIVIVPK-STLLNWMNEFKKW 252 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~-~l~~~~~--~~~~~LIV~P~-~ll~qW~~e~~~~ 252 (429)
..||.|.+-...+...+..+..+++-.++|+|||+..+..+. ++..... ...+++++++. +...+=..++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 458999999999999999999999999999999998877653 3332111 11256666666 3444444555543
No 98
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.40 E-value=4.3e-06 Score=79.99 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHH-HHhhhcc--cCCCeEEEecc-chHHHHHHHHHhh
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG-YMKHYRN--IAGPHIVIVPK-STLLNWMNEFKKW 252 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~-~l~~~~~--~~~~~LIV~P~-~ll~qW~~e~~~~ 252 (429)
..||.|.+-...+...+..+..+++-.++|+|||+..+..+. ++..... ...+++++++. +...+=..++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 458999999999999999999999999999999998877653 3332111 11256666666 3444444555543
No 99
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.40 E-value=3.6e-06 Score=92.31 Aligned_cols=85 Identities=15% Similarity=0.192 Sum_probs=60.6
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHH-HH---Hh
Q psy10683 177 KGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMN-EF---KK 251 (429)
Q Consensus 177 ~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~-e~---~~ 251 (429)
.+...||+|.+.+..+...+..+..+++-.++|+|||+..+.-+..... ..++++|.+|+ +|-.||.. ++ .+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~ 318 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQLLEKDIPLLNE 318 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 3567899999999999888888888888999999999987655433322 34588888998 55677654 44 34
Q ss_pred hcC-CCceEEEeCC
Q psy10683 252 WCP-TLRAICLIGD 264 (429)
Q Consensus 252 ~~~-~~~~~~~~g~ 264 (429)
.++ ++++.+..|.
T Consensus 319 ~~~~~~~~~~~kG~ 332 (850)
T TIGR01407 319 ILNFKINAALIKGK 332 (850)
T ss_pred HcCCCceEEEEEcc
Confidence 443 3556655553
No 100
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.1e-05 Score=83.43 Aligned_cols=162 Identities=18% Similarity=0.245 Sum_probs=108.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHH-HHHHHHhhhcccCCC-eEEEecc-chHHHHHHHHHhhcC--
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI-SLLGYMKHYRNIAGP-HIVIVPK-STLLNWMNEFKKWCP-- 254 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i-~~~~~l~~~~~~~~~-~LIV~P~-~ll~qW~~e~~~~~~-- 254 (429)
..-|.|..++-.++. |...+..+.+|+|||..-+ .++..+......... .||++|. .|..|-.+++.++..
T Consensus 51 ~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 51 EPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 455889999876554 6788889999999997653 344443321111222 8999999 566667777776653
Q ss_pred -CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCc--hhHHHHHHHhcc
Q psy10683 255 -TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNE--KSKLSEIVREFK 329 (429)
Q Consensus 255 -~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~l~ 329 (429)
.+++..++|........ ..... ..||||.|...+..... .+.-....++|+|||.++-+. ...+...+..+.
T Consensus 127 ~~~~~~~i~GG~~~~~q~-~~l~~--~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p 203 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQI-EALKR--GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALP 203 (513)
T ss_pred CCccEEEEECCCCHHHHH-HHHhc--CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC
Confidence 57788888876555443 33332 38999999998875432 344446679999999999654 334556666665
Q ss_pred C-CcEEEEeCCccCCCHHHHH
Q psy10683 330 T-TNRLLLTGTPLQNNLHELW 349 (429)
Q Consensus 330 ~-~~r~~lTgTP~~n~~~dl~ 349 (429)
. ...+++|||.-. ...++.
T Consensus 204 ~~~qtllfSAT~~~-~i~~l~ 223 (513)
T COG0513 204 PDRQTLLFSATMPD-DIRELA 223 (513)
T ss_pred cccEEEEEecCCCH-HHHHHH
Confidence 4 567889999765 454443
No 101
>KOG0353|consensus
Probab=98.38 E-value=5.7e-06 Score=78.63 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=108.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCce
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRA 258 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~ 258 (429)
.+||.|+++++..+. +...+|..++|-||++..- ....-..+-+|||||. +++..-.-.++...-+...
T Consensus 94 kfrplq~~ain~~ma----~ed~~lil~tgggkslcyq------lpal~adg~alvi~plislmedqil~lkqlgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQ------LPALCADGFALVICPLISLMEDQILQLKQLGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhhc----cCceEEEEeCCCccchhhh------hhHHhcCCceEeechhHHHHHHHHHHHHHhCcchhh
Confidence 689999999987664 6778999999999997431 1111225678999998 7776666566655433333
Q ss_pred EEEeCChhhHHHHHHhh--cCCCCccEEEcchHHHHHHhh-------hhhccCceEEEecCcccccC-------chhHHH
Q psy10683 259 ICLIGDQDARNAMIRDV--MMPGEWDVCITSYEMCIRERG-------VFKKFNWRYLVIDEAHRIKN-------EKSKLS 322 (429)
Q Consensus 259 ~~~~g~~~~~~~~~~~~--~~~~~~dvvitty~~l~~~~~-------~l~~~~~~~vIiDEaH~~kn-------~~s~~~ 322 (429)
+....++... +..... .....+.++.+|.+.+.+... .+....|.+|-+||.|.... ..+.+.
T Consensus 164 lnansske~~-k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ 242 (695)
T KOG0353|consen 164 LNANSSKEEA-KRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALG 242 (695)
T ss_pred ccCcccHHHH-HHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHH
Confidence 3333333222 222222 233567788888887765533 34445688999999998732 222333
Q ss_pred HHHHhccCCcEEEEeCCccCCCHHHHHHHHhh
Q psy10683 323 EIVREFKTTNRLLLTGTPLQNNLHELWALLNF 354 (429)
Q Consensus 323 ~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~f 354 (429)
-.-++++....++||||...+-+.|...+|..
T Consensus 243 ilkrqf~~~~iigltatatn~vl~d~k~il~i 274 (695)
T KOG0353|consen 243 ILKRQFKGAPIIGLTATATNHVLDDAKDILCI 274 (695)
T ss_pred HHHHhCCCCceeeeehhhhcchhhHHHHHHhH
Confidence 33456788889999999999999988887753
No 102
>KOG0330|consensus
Probab=98.36 E-value=4.4e-06 Score=79.88 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=105.6
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEeccchHHH-HHHHHHhhcC--CC
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPKSTLLN-WMNEFKKWCP--TL 256 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~~ll~q-W~~e~~~~~~--~~ 256 (429)
+-+-|.+++-.++ .|..+|.+.++|+|||... |-++..+.. .+..-..||++|.--+.+ -.+.|+.... ++
T Consensus 84 PT~IQ~~aiP~~L----~g~dvIglAeTGSGKT~afaLPIl~~LL~-~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 84 PTKIQSEAIPVAL----GGRDVIGLAETGSGKTGAFALPILQRLLQ-EPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred Cchhhhhhcchhh----CCCcEEEEeccCCCchhhhHHHHHHHHHc-CCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 4467888775544 4778999999999999864 445566665 333345689999966555 4555666643 47
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhcc---CceEEEecCcccccCch--hHHHHHHHhccCC
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKF---NWRYLVIDEAHRIKNEK--SKLSEIVREFKTT 331 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~---~~~~vIiDEaH~~kn~~--s~~~~~~~~l~~~ 331 (429)
++.++.|..+.......- ..+.+|+|+|...+......-+.+ ...++|+|||.++-+.+ -.+.+.++.++..
T Consensus 159 r~~~lvGG~~m~~q~~~L---~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~e 235 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQL---SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRE 235 (476)
T ss_pred EEEEEecCchHHHHHHHh---hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCcc
Confidence 788888887765433222 246789999999998776532222 35679999999997644 4567788888665
Q ss_pred cE-EEEeCCccC
Q psy10683 332 NR-LLLTGTPLQ 342 (429)
Q Consensus 332 ~r-~~lTgTP~~ 342 (429)
++ +++|||.-.
T Consensus 236 rqt~LfsATMt~ 247 (476)
T KOG0330|consen 236 RQTFLFSATMTK 247 (476)
T ss_pred ceEEEEEeecch
Confidence 54 778888643
No 103
>KOG1015|consensus
Probab=98.36 E-value=6.5e-08 Score=100.75 Aligned_cols=46 Identities=37% Similarity=0.509 Sum_probs=40.4
Q ss_pred CcccHHHHHHHHHHHHhHh---------cCcccchhhcccccchhhhhhccCCCc
Q psy10683 34 GEMRDYQVRGLNWMISLYE---------NGINGILADEMGLGKTLQTISLLGPKI 79 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~---------~~~~~~l~~~~~~~k~~~~~~~~~~~~ 79 (429)
..|+|||..||.|||.+.+ .|.|||||.+||||||+|+|+|+.+.+
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL 721 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVL 721 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHH
Confidence 3899999999999999776 567999999999999999999976543
No 104
>KOG0390|consensus
Probab=98.35 E-value=9.9e-08 Score=99.95 Aligned_cols=52 Identities=35% Similarity=0.443 Sum_probs=45.3
Q ss_pred CCcccHHHHHHHHHHHHhHh------cCcccchhhcccccchhhhhhccCCCcchhhh
Q psy10683 33 GGEMRDYQVRGLNWMISLYE------NGINGILADEMGLGKTLQTISLLGPKIDRFDY 84 (429)
Q Consensus 33 ~~~l~~~q~~g~~~~~~~~~------~~~~~~l~~~~~~~k~~~~~~~~~~~~~r~~~ 84 (429)
+..|||||++|+.||+.+.. ...|||+||+||+|||.++|+++|++.++++.
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~ 293 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQ 293 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcC
Confidence 34899999999999999775 33689999999999999999999988777655
No 105
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.34 E-value=6.8e-06 Score=87.27 Aligned_cols=129 Identities=16% Similarity=0.245 Sum_probs=91.7
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC-
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT- 255 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~- 255 (429)
|..+...|+-=. .. +-.|..--+..++|+|||.-.+....++.. ..++.+||+|. .|+.|-.+.+.++...
T Consensus 80 G~~~ws~QR~Wa---kR-~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~---kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 80 GFRPWSAQRVWA---KR-LVRGKSFAIIAPTGVGKTTFGLLMSLYLAK---KGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CCCchHHHHHHH---HH-HHcCCceEEEcCCCCchhHHHHHHHHHHHh---cCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 446677776433 22 234555555667999999877666666554 24788999999 5667777888887632
Q ss_pred --CceEE-EeCCh--hhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccc
Q psy10683 256 --LRAIC-LIGDQ--DARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRI 314 (429)
Q Consensus 256 --~~~~~-~~g~~--~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~ 314 (429)
..+.+ ||+.- ..+.. .......++|||+|||-+.+.++...|.+++|++|++|.+..+
T Consensus 153 ~~~~~~~~yh~~l~~~ekee-~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 153 GSLDVLVVYHSALPTKEKEE-ALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred CCcceeeeeccccchHHHHH-HHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHH
Confidence 22222 77762 33333 3344456899999999999999999999999999999999986
No 106
>KOG0338|consensus
Probab=98.20 E-value=6.7e-06 Score=81.12 Aligned_cols=146 Identities=21% Similarity=0.295 Sum_probs=92.1
Q ss_pred CeEeecCCCCCHHHHHH-HHHHHHhhh--cccCCCeEEEeccchH----HHHHHHHHhhcCCCceEEEeCChhhHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTI-SLLGYMKHY--RNIAGPHIVIVPKSTL----LNWMNEFKKWCPTLRAICLIGDQDARNAMIR 273 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i-~~~~~l~~~--~~~~~~~LIV~P~~ll----~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~ 273 (429)
..+-+..+|+|||...+ -++..|... ...+.++||+||.--| ++-...+.+|+ ++.+.+..|.-+.+..
T Consensus 220 DIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~Q--- 295 (691)
T KOG0338|consen 220 DICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQ--- 295 (691)
T ss_pred hhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHH---
Confidence 33446779999996543 333333321 2345678999999443 34556677776 4888888887765532
Q ss_pred hhcCCCCccEEEcchHHHHHHhhhhhcc---CceEEEecCcccccCch--hHHHHHHHhc-cCCcEEEEeCCccCCCHHH
Q psy10683 274 DVMMPGEWDVCITSYEMCIRERGVFKKF---NWRYLVIDEAHRIKNEK--SKLSEIVREF-KTTNRLLLTGTPLQNNLHE 347 (429)
Q Consensus 274 ~~~~~~~~dvvitty~~l~~~~~~l~~~---~~~~vIiDEaH~~kn~~--s~~~~~~~~l-~~~~r~~lTgTP~~n~~~d 347 (429)
........||||+|...|......-..+ ...++|+|||.++.... ..+...++.. +.+..+++|||. ...++|
T Consensus 296 E~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkd 374 (691)
T KOG0338|consen 296 EAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKD 374 (691)
T ss_pred HHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHH
Confidence 2222356899999999987765443333 45689999999985432 2333444433 344559999995 445666
Q ss_pred HHHH
Q psy10683 348 LWAL 351 (429)
Q Consensus 348 l~~l 351 (429)
|.++
T Consensus 375 L~sl 378 (691)
T KOG0338|consen 375 LASL 378 (691)
T ss_pred HHHh
Confidence 6653
No 107
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.19 E-value=2.2e-05 Score=82.18 Aligned_cols=68 Identities=19% Similarity=0.154 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc
Q psy10683 185 QVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC 253 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~ 253 (429)
|.+...++...+..+...++-..+|+|||+..+.-+..... .....++||++|+ .+..|+.+++....
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~-~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLK-ERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH-hccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 77888888888888888888899999999887655433222 1235688999999 66788887776543
No 108
>KOG0345|consensus
Probab=98.17 E-value=4.4e-05 Score=74.84 Aligned_cols=154 Identities=17% Similarity=0.234 Sum_probs=98.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHh-hhcc--cCC--CeEEEeccchHH-H---HHHHHH
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMK-HYRN--IAG--PHIVIVPKSTLL-N---WMNEFK 250 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~-~~~~--~~~--~~LIV~P~~ll~-q---W~~e~~ 250 (429)
.+-|-|..++-.++ ++...++-..+|+|||+.-+.-+..+. .... .++ -.|||.|+--+. | -...|.
T Consensus 28 ~mTpVQa~tIPlll----~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~ 103 (567)
T KOG0345|consen 28 KMTPVQAATIPLLL----KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFL 103 (567)
T ss_pred ccCHHHHhhhHHHh----cCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHH
Confidence 56688888886554 466788889999999987655443332 2111 222 348999995443 3 334466
Q ss_pred hhcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHH----HhhhhhccCceEEEecCcccccC--chhHHHHH
Q psy10683 251 KWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIR----ERGVFKKFNWRYLVIDEAHRIKN--EKSKLSEI 324 (429)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~----~~~~l~~~~~~~vIiDEaH~~kn--~~s~~~~~ 324 (429)
.++++++...+.|+....... .. +.....+|+|.|...+.. ....+.-....++|+|||.++-. ........
T Consensus 104 ~~l~~l~~~l~vGG~~v~~Di-~~-fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~I 181 (567)
T KOG0345|consen 104 EHLPNLNCELLVGGRSVEEDI-KT-FKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTI 181 (567)
T ss_pred HhhhccceEEEecCccHHHHH-HH-HHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHH
Confidence 667899999999986554432 11 222456799999766543 33345544677999999999844 33445566
Q ss_pred HHhccCCcEEE-EeCC
Q psy10683 325 VREFKTTNRLL-LTGT 339 (429)
Q Consensus 325 ~~~l~~~~r~~-lTgT 339 (429)
+..|+..+|-+ +|||
T Consensus 182 Ls~LPKQRRTGLFSAT 197 (567)
T KOG0345|consen 182 LSFLPKQRRTGLFSAT 197 (567)
T ss_pred HHhcccccccccccch
Confidence 66676655533 3444
No 109
>KOG0343|consensus
Probab=98.17 E-value=1.5e-05 Score=79.42 Aligned_cols=170 Identities=21% Similarity=0.269 Sum_probs=106.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHH-HHHHHhhhcc---cCCCeEEEecc-chHHHHHHHHHhhc-
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS-LLGYMKHYRN---IAGPHIVIVPK-STLLNWMNEFKKWC- 253 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~-~~~~l~~~~~---~~~~~LIV~P~-~ll~qW~~e~~~~~- 253 (429)
.+..-|...|-..+. |...+=|.-+|+|||+..+- ++..+..... ..--.|||.|. .|-.|-.+-+.+..
T Consensus 91 ~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 456678887764443 55556689999999986543 3444433221 11235899998 45556555555433
Q ss_pred -CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh---hhhccCceEEEecCcccccC--chhHHHHHHHh
Q psy10683 254 -PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG---VFKKFNWRYLVIDEAHRIKN--EKSKLSEIVRE 327 (429)
Q Consensus 254 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~---~l~~~~~~~vIiDEaH~~kn--~~s~~~~~~~~ 327 (429)
.++..-++.|..+.... .......+|+|+|...+..... .+..-+..++|+|||.++-. ....+...+..
T Consensus 167 ~h~fSaGLiiGG~~~k~E----~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~ 242 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFE----LERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIEN 242 (758)
T ss_pred ccccccceeecCchhHHH----HHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHh
Confidence 24556666676654322 1223567899999999876543 34555678999999999844 33445556666
Q ss_pred cc-CCcEEEEeCCccCCCHHHHHHHHhhhCCCC
Q psy10683 328 FK-TTNRLLLTGTPLQNNLHELWALLNFLLPDI 359 (429)
Q Consensus 328 l~-~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~ 359 (429)
|. .+..+++|||+. +++.||.. |++-+|.+
T Consensus 243 lP~~RQTLLFSATqt-~svkdLaR-LsL~dP~~ 273 (758)
T KOG0343|consen 243 LPKKRQTLLFSATQT-KSVKDLAR-LSLKDPVY 273 (758)
T ss_pred CChhheeeeeecccc-hhHHHHHH-hhcCCCcE
Confidence 64 445699999995 56777755 34445543
No 110
>KOG1000|consensus
Probab=98.15 E-value=3.2e-07 Score=89.88 Aligned_cols=50 Identities=32% Similarity=0.503 Sum_probs=43.5
Q ss_pred cccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccCCCcchhhhhhh
Q psy10683 35 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPKIDRFDYLLK 87 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~~~r~~~Ll~ 87 (429)
.|.|||++||+|-+ ..+..+++||+||||||+|.|+...+++..+++|+.
T Consensus 198 ~LlPFQreGv~faL---~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliV 247 (689)
T KOG1000|consen 198 RLLPFQREGVIFAL---ERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIV 247 (689)
T ss_pred hhCchhhhhHHHHH---hcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEE
Confidence 79999999999864 477889999999999999999988888888777765
No 111
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.14 E-value=3.3e-06 Score=88.83 Aligned_cols=124 Identities=16% Similarity=0.179 Sum_probs=74.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhcCC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWCPT 255 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~~~ 255 (429)
.++||+...+..+.- ..|.|.-+.+|.|||+++...+ ++.... ...++||+|+..|.. |...+-+++ +
T Consensus 54 g~~p~~vQlig~~~l----~~G~Iaem~TGeGKTLva~lpa-~l~aL~--G~~V~VvTpt~~LA~qdae~~~~l~~~L-G 125 (745)
T TIGR00963 54 GMRPFDVQLIGGIAL----HKGKIAEMKTGEGKTLTATLPA-YLNALT--GKGVHVVTVNDYLAQRDAEWMGQVYRFL-G 125 (745)
T ss_pred CCCccchHHhhhhhh----cCCceeeecCCCccHHHHHHHH-HHHHHh--CCCEEEEcCCHHHHHHHHHHHHHHhccC-C
Confidence 455555554444432 3455778999999999764332 222211 346899999977644 666665555 4
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh---------hhhhccCceEEEecCcccccC
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER---------GVFKKFNWRYLVIDEAHRIKN 316 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~---------~~l~~~~~~~vIiDEaH~~kn 316 (429)
+.+.+..|........ . . -..||++.|...+.-+. ..+......++||||+|++.-
T Consensus 126 Lsv~~i~g~~~~~~r~--~-~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 126 LSVGLILSGMSPEERR--E-A--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred CeEEEEeCCCCHHHHH--H-h--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 7777777754432211 1 1 13689999987652221 122334678999999999843
No 112
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.13 E-value=2.1e-05 Score=78.78 Aligned_cols=168 Identities=21% Similarity=0.180 Sum_probs=106.3
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEeccchHHH-HHHHHHhhcCC-
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPKSTLLN-WMNEFKKWCPT- 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~~ll~q-W~~e~~~~~~~- 255 (429)
..|.|-|.-+|. ..+-.|.+-++...+++|||+++ +|-+. ......++.|.++|...+.| =.++|.+-+..
T Consensus 215 ~eLlPVQ~laVe---~GLLeG~nllVVSaTasGKTLIgElAGi~---~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 215 EELLPVQVLAVE---AGLLEGENLLVVSATASGKTLIGELAGIP---RLLSGGKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred ceecchhhhhhh---hccccCCceEEEeccCCCcchHHHhhCcH---HHHhCCCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 478899998886 33456778899999999999876 33333 22344678999999966655 55678766644
Q ss_pred -CceEEEeCChhhHHHHH-HhhcCCCCccEEEcchHHHHHHhhh-hhccCceEEEecCcccccCc--hhHH---HHHHHh
Q psy10683 256 -LRAICLIGDQDARNAMI-RDVMMPGEWDVCITSYEMCIRERGV-FKKFNWRYLVIDEAHRIKNE--KSKL---SEIVRE 327 (429)
Q Consensus 256 -~~~~~~~g~~~~~~~~~-~~~~~~~~~dvvitty~~l~~~~~~-l~~~~~~~vIiDEaH~~kn~--~s~~---~~~~~~ 327 (429)
+++.+-.|....+.... .......+.||++-||+-+---... -.-.+...|||||.|.+... ...+ ...++.
T Consensus 289 glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~ 368 (830)
T COG1202 289 GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRY 368 (830)
T ss_pred cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHH
Confidence 34444455443222100 1122345689999999876332211 11125678999999999652 1222 223333
Q ss_pred c-cCCcEEEEeCCccCCCHHHHHHHHhh
Q psy10683 328 F-KTTNRLLLTGTPLQNNLHELWALLNF 354 (429)
Q Consensus 328 l-~~~~r~~lTgTP~~n~~~dl~~ll~f 354 (429)
+ .....+.||||- .|+.+|...|..
T Consensus 369 l~~~AQ~i~LSATV--gNp~elA~~l~a 394 (830)
T COG1202 369 LFPGAQFIYLSATV--GNPEELAKKLGA 394 (830)
T ss_pred hCCCCeEEEEEeec--CChHHHHHHhCC
Confidence 3 446678999994 678888887753
No 113
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.13 E-value=5.3e-05 Score=69.61 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCC-eEeecCCCCCHHHHHHHHHHHHh-----hhcccCCCeEEEecc-chHHHHHHHHHh
Q psy10683 180 EMRDYQVRGLNWMISLYENGIN-GILADEMGLGKTLQTISLLGYMK-----HYRNIAGPHIVIVPK-STLLNWMNEFKK 251 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~-~ilad~~GlGKT~~~i~~~~~l~-----~~~~~~~~~LIV~P~-~ll~qW~~e~~~ 251 (429)
+|.+.|.+|+..++. ... .++..++|+|||.+..+++..+. ......+++||++|+ ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999975542 333 78899999999988888887772 225667889999998 556666666655
No 114
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.10 E-value=2.5e-05 Score=84.08 Aligned_cols=72 Identities=21% Similarity=0.159 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHh
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKK 251 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~ 251 (429)
..||.|++....+...+..+.++++-.++|+|||+.+++.+.......+...+++..+.+ +-+.|-.+|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 568999999999999999999999999999999998876654332222222344444444 667888999987
No 115
>KOG1016|consensus
Probab=98.06 E-value=4.3e-07 Score=93.00 Aligned_cols=65 Identities=29% Similarity=0.440 Sum_probs=51.3
Q ss_pred hccccCCCccccccCCCCccc-------CCcccHHHHHHHHHHHHhH---------hcCcccchhhcccccchhhhhhcc
Q psy10683 12 ANANTEGKTIVSFENSPFYIK-------GGEMRDYQVRGLNWMISLY---------ENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 12 ~~~~~~~~~~~~~~~~p~~~~-------~~~l~~~q~~g~~~~~~~~---------~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
+....+|+.+|...+++..-. ...++|||.-|++||+... ..|.|||||..||||||+|+|+|.
T Consensus 224 n~~d~~Grv~VN~~HPeeee~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~ 303 (1387)
T KOG1016|consen 224 NTEDKEGRVLVNAGHPEEEEDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFS 303 (1387)
T ss_pred cCccccCcEEEecCCCCCCcceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehh
Confidence 444556788888888776542 3479999999999998732 256789999999999999999986
Q ss_pred C
Q psy10683 76 G 76 (429)
Q Consensus 76 ~ 76 (429)
.
T Consensus 304 d 304 (1387)
T KOG1016|consen 304 D 304 (1387)
T ss_pred H
Confidence 4
No 116
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.05 E-value=5.7e-05 Score=81.84 Aligned_cols=141 Identities=12% Similarity=0.040 Sum_probs=80.6
Q ss_pred HHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH-HHHHHHHHhhcC---CCceEEEeCChhh
Q psy10683 192 MISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL-LNWMNEFKKWCP---TLRAICLIGDQDA 267 (429)
Q Consensus 192 l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll-~qW~~e~~~~~~---~~~~~~~~g~~~~ 267 (429)
++..+.++...|+..++|+|||.+..-.+.... ...+.++|+.|.-++ .|-.+.+.+... +..+....+...
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~---~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~- 85 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAP---GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN- 85 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhh---ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc-
Confidence 345556778899999999999998865543221 234578999999654 344444543332 112211111111
Q ss_pred HHHHHHhhcCCCCccEEEcchHHHHHHhhh-hhccCceEEEecCccc-ccCchhH--HHH-HHHhcc-CCcEEEEeCCcc
Q psy10683 268 RNAMIRDVMMPGEWDVCITSYEMCIRERGV-FKKFNWRYLVIDEAHR-IKNEKSK--LSE-IVREFK-TTNRLLLTGTPL 341 (429)
Q Consensus 268 ~~~~~~~~~~~~~~dvvitty~~l~~~~~~-l~~~~~~~vIiDEaH~-~kn~~s~--~~~-~~~~l~-~~~r~~lTgTP~ 341 (429)
....+.+|+++|...+.+.... ..--++++|||||+|. .-+..-. ..+ ....+. ....++||||.-
T Consensus 86 --------~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~ 157 (819)
T TIGR01970 86 --------KVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLD 157 (819)
T ss_pred --------ccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 1112356889998888765432 1122577999999994 4442221 112 222343 345688999975
Q ss_pred CCC
Q psy10683 342 QNN 344 (429)
Q Consensus 342 ~n~ 344 (429)
...
T Consensus 158 ~~~ 160 (819)
T TIGR01970 158 GER 160 (819)
T ss_pred HHH
Confidence 443
No 117
>KOG0351|consensus
Probab=98.01 E-value=2e-05 Score=85.48 Aligned_cols=171 Identities=21% Similarity=0.246 Sum_probs=113.0
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~ 257 (429)
..+||-|.++|+..+ .|..+.+-+.+|.||++.- -.-.--..+-+|||.|. +|+..-...+.+ .++.
T Consensus 263 ~~FR~~Q~eaI~~~l----~Gkd~fvlmpTG~GKSLCY------QlPA~l~~gitvVISPL~SLm~DQv~~L~~--~~I~ 330 (941)
T KOG0351|consen 263 KGFRPNQLEAINATL----SGKDCFVLMPTGGGKSLCY------QLPALLLGGVTVVISPLISLMQDQVTHLSK--KGIP 330 (941)
T ss_pred ccCChhHHHHHHHHH----cCCceEEEeecCCceeeEe------eccccccCCceEEeccHHHHHHHHHHhhhh--cCcc
Confidence 478999999998444 4788999999999999643 11112234578999998 666655555533 2344
Q ss_pred eEEEeCChhh--HHHHHHhhcC-CCCccEEEcchHHHHHHhhhhh---c----cCceEEEecCcccccC-------chhH
Q psy10683 258 AICLIGDQDA--RNAMIRDVMM-PGEWDVCITSYEMCIRERGVFK---K----FNWRYLVIDEAHRIKN-------EKSK 320 (429)
Q Consensus 258 ~~~~~g~~~~--~~~~~~~~~~-~~~~dvvitty~~l~~~~~~l~---~----~~~~~vIiDEaH~~kn-------~~s~ 320 (429)
...+.+.... +......... ...++++..|.+.+........ . ....++||||||.+.. ....
T Consensus 331 a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~ 410 (941)
T KOG0351|consen 331 ACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKR 410 (941)
T ss_pred eeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHH
Confidence 4455554433 3333333222 1268899999998876543321 1 1257899999999843 2233
Q ss_pred HHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCC
Q psy10683 321 LSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFS 361 (429)
Q Consensus 321 ~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~ 361 (429)
+.....++.....++||||--..--.|+...|++-+|..+.
T Consensus 411 l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~ 451 (941)
T KOG0351|consen 411 LGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK 451 (941)
T ss_pred HHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec
Confidence 33334445666889999999999999999999988887654
No 118
>KOG0348|consensus
Probab=98.00 E-value=2.1e-05 Score=78.11 Aligned_cols=148 Identities=20% Similarity=0.322 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHH-HHHhhhc----ccCCC-eEEEecc-chHHHHHHHHHhhcCCCc
Q psy10683 185 QVRGLNWMISLYENGINGILADEMGLGKTLQTISLL-GYMKHYR----NIAGP-HIVIVPK-STLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~-~~l~~~~----~~~~~-~LIV~P~-~ll~qW~~e~~~~~~~~~ 257 (429)
|..+|--++ .++..++-..+|+|||+..+.-+ ..+.... ...|+ .|||+|. .|..|-.+-+.+......
T Consensus 164 Qkq~IP~lL----~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~h 239 (708)
T KOG0348|consen 164 QKQAIPVLL----EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFH 239 (708)
T ss_pred hhcchhhhh----cCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCce
Confidence 555554443 37778999999999999775543 3332211 22344 3889999 666777777777665443
Q ss_pred eEE----EeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhcc---CceEEEecCcccccC--chhHHHHHHHhc
Q psy10683 258 AIC----LIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKF---NWRYLVIDEAHRIKN--EKSKLSEIVREF 328 (429)
Q Consensus 258 ~~~----~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~---~~~~vIiDEaH~~kn--~~s~~~~~~~~l 328 (429)
.++ ..|.+....+.+. ....+|+|.|...+......-..+ ....||+|||.++.. ..-.+.+.+..+
T Consensus 240 WIVPg~lmGGEkkKSEKARL----RKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v 315 (708)
T KOG0348|consen 240 WIVPGVLMGGEKKKSEKARL----RKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAV 315 (708)
T ss_pred EEeeceeecccccccHHHHH----hcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHH
Confidence 332 2333322222211 146789999999998765433333 356799999999832 222333333333
Q ss_pred c------C--------CcEEEEeCCc
Q psy10683 329 K------T--------TNRLLLTGTP 340 (429)
Q Consensus 329 ~------~--------~~r~~lTgTP 340 (429)
. + .-+++||||-
T Consensus 316 ~~~~~~e~~~~~lp~q~q~mLlSATL 341 (708)
T KOG0348|consen 316 HSIQNAECKDPKLPHQLQNMLLSATL 341 (708)
T ss_pred hhccchhcccccccHHHHhHhhhhhh
Confidence 1 1 2358899996
No 119
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=97.99 E-value=5.2e-05 Score=81.03 Aligned_cols=123 Identities=21% Similarity=0.141 Sum_probs=76.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhcCC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWCPT 255 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~~~ 255 (429)
.++||+...+..+.- ..|.|..+.+|.|||+++...+..... ....++||+|+..|.. |...+-+++ +
T Consensus 76 g~~p~~vQl~~~~~l----~~G~Iaem~TGeGKTL~a~lp~~l~al---~G~~v~VvTpt~~LA~qd~e~~~~l~~~l-G 147 (790)
T PRK09200 76 GMRPYDVQLIGALVL----HEGNIAEMQTGEGKTLTATMPLYLNAL---EGKGVHLITVNDYLAKRDAEEMGQVYEFL-G 147 (790)
T ss_pred CCCCchHHHHhHHHH----cCCceeeecCCCcchHHHHHHHHHHHH---cCCCeEEEeCCHHHHHHHHHHHHHHHhhc-C
Confidence 455555555544432 245588999999999976543321111 2557899999977754 777777765 5
Q ss_pred CceEEEeCChh-hHHHHHHhhcCCCCccEEEcchHHH-----HHHhh----hhhccCceEEEecCccccc
Q psy10683 256 LRAICLIGDQD-ARNAMIRDVMMPGEWDVCITSYEMC-----IRERG----VFKKFNWRYLVIDEAHRIK 315 (429)
Q Consensus 256 ~~~~~~~g~~~-~~~~~~~~~~~~~~~dvvitty~~l-----~~~~~----~l~~~~~~~vIiDEaH~~k 315 (429)
+.+.++.|... .... +. . ...||+++|...+ +.... ......+.++||||++.+.
T Consensus 148 l~v~~i~g~~~~~~~r--~~-~--y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 148 LTVGLNFSDIDDASEK--KA-I--YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred CeEEEEeCCCCcHHHH--HH-h--cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 77777777654 2221 11 1 2468999996555 33221 1222467899999999973
No 120
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.98 E-value=0.00011 Score=79.76 Aligned_cols=140 Identities=12% Similarity=0.084 Sum_probs=79.4
Q ss_pred HHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH-HHHHHHHHhhcC---CCceEEEeCChhh
Q psy10683 192 MISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL-LNWMNEFKKWCP---TLRAICLIGDQDA 267 (429)
Q Consensus 192 l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll-~qW~~e~~~~~~---~~~~~~~~g~~~~ 267 (429)
++..+.++...|+..++|+|||.+..-.+.. .....+.++|++|.-++ .|-.+.+.+... +..+....+....
T Consensus 13 i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~---~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~ 89 (812)
T PRK11664 13 LLTALKTAPQVLLKAPTGAGKSTWLPLQLLQ---HGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK 89 (812)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHHH---cCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc
Confidence 3455566778999999999999987543321 12223578999999655 344444544331 1222222221110
Q ss_pred HHHHHHhhcCCCCccEEEcchHHHHHHhhh-hhccCceEEEecCcccc-cCchhH---HHHHHHhcc-CCcEEEEeCCcc
Q psy10683 268 RNAMIRDVMMPGEWDVCITSYEMCIRERGV-FKKFNWRYLVIDEAHRI-KNEKSK---LSEIVREFK-TTNRLLLTGTPL 341 (429)
Q Consensus 268 ~~~~~~~~~~~~~~dvvitty~~l~~~~~~-l~~~~~~~vIiDEaH~~-kn~~s~---~~~~~~~l~-~~~r~~lTgTP~ 341 (429)
......|+++|...+.+.... ..-..+++|||||+|.. -+.... ..+....+. ....++||||.-
T Consensus 90 ---------~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~ 160 (812)
T PRK11664 90 ---------VGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD 160 (812)
T ss_pred ---------cCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence 012335889998888654332 12236789999999972 222211 112223343 345699999985
Q ss_pred CC
Q psy10683 342 QN 343 (429)
Q Consensus 342 ~n 343 (429)
..
T Consensus 161 ~~ 162 (812)
T PRK11664 161 ND 162 (812)
T ss_pred HH
Confidence 43
No 121
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.97 E-value=6e-05 Score=81.77 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=99.5
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC
Q psy10683 177 KGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT 255 (429)
Q Consensus 177 ~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~ 255 (429)
.+..|-++|++++.-+ +.+.+.+++..+|+|||+++--.+..... + ..+++-..|. ++.+|=..+|..-+.+
T Consensus 116 ~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~-~--~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALR-D--GQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHH-c--CCceEeccchhhhhhhHHHHHHHHhhh
Confidence 4678999999998644 56889999999999999998766654433 2 3347777888 5556656666555543
Q ss_pred C--ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh----hhhhccCceEEEecCcccccCchhH-HHHHHH-h
Q psy10683 256 L--RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER----GVFKKFNWRYLVIDEAHRIKNEKSK-LSEIVR-E 327 (429)
Q Consensus 256 ~--~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~----~~l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~-~ 327 (429)
. .+-++.|.... .++..++++|-+.+++-. ..+. .-..||+||.|.+...... .+..+. .
T Consensus 189 v~~~vGL~TGDv~I----------N~~A~clvMTTEILRnMlyrg~~~~~--~i~~ViFDEvHyi~D~eRG~VWEE~Ii~ 256 (1041)
T COG4581 189 VADMVGLMTGDVSI----------NPDAPCLVMTTEILRNMLYRGSESLR--DIEWVVFDEVHYIGDRERGVVWEEVIIL 256 (1041)
T ss_pred hhhhccceecceee----------CCCCceEEeeHHHHHHHhccCccccc--ccceEEEEeeeeccccccchhHHHHHHh
Confidence 2 23344443332 244556666668776432 2223 3457999999999764433 344333 3
Q ss_pred c-cCCcEEEEeCCccCCCHHHHHHHHhh
Q psy10683 328 F-KTTNRLLLTGTPLQNNLHELWALLNF 354 (429)
Q Consensus 328 l-~~~~r~~lTgTP~~n~~~dl~~ll~f 354 (429)
+ ..-+-++||||= .|..|+-..++-
T Consensus 257 lP~~v~~v~LSATv--~N~~EF~~Wi~~ 282 (1041)
T COG4581 257 LPDHVRFVFLSATV--PNAEEFAEWIQR 282 (1041)
T ss_pred cCCCCcEEEEeCCC--CCHHHHHHHHHh
Confidence 3 334789999993 355555555543
No 122
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.96 E-value=0.00011 Score=77.73 Aligned_cols=154 Identities=17% Similarity=0.123 Sum_probs=106.8
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~ 257 (429)
..|-+-|..++..+..........+|...+|+|||-.-+.++...... .+.+||++|. ++..|-.+.|+..++ .+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GKQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CCEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 367789999999887765223457889999999999988888766553 4678999999 889998888888776 67
Q ss_pred eEEEeCChhhHHHHHHh-hcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccc--cCchhHH------HHHHHhc
Q psy10683 258 AICLIGDQDARNAMIRD-VMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRI--KNEKSKL------SEIVREF 328 (429)
Q Consensus 258 ~~~~~g~~~~~~~~~~~-~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~--kn~~s~~------~~~~~~l 328 (429)
+.++++.-....+.... ....+...|||-|...+..-.. +-.+|||||=|.- |..+... +......
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred hhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchh-----hccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 77777654333221111 1234778899998887633222 3568999999985 4433222 2222334
Q ss_pred cCCcEEEEeCCcc
Q psy10683 329 KTTNRLLLTGTPL 341 (429)
Q Consensus 329 ~~~~r~~lTgTP~ 341 (429)
.....++-||||-
T Consensus 348 ~~~pvvLgSATPS 360 (730)
T COG1198 348 ENAPVVLGSATPS 360 (730)
T ss_pred hCCCEEEecCCCC
Confidence 5667899999994
No 123
>KOG0352|consensus
Probab=97.93 E-value=0.00017 Score=69.99 Aligned_cols=166 Identities=18% Similarity=0.190 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEE
Q psy10683 183 DYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICL 261 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~ 261 (429)
|.|..|+.... ..+....+.+++|.||++.-- + -.+.. .+-|+||.|. .|+....+.+.+.--....+..
T Consensus 23 ~LQE~A~~c~V---K~k~DVyVsMPTGaGKSLCyQ-L-PaL~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIV---KRKCDVYVSMPTGAGKSLCYQ-L-PALVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLNS 93 (641)
T ss_pred hHHHHHHHHHH---hccCcEEEeccCCCchhhhhh-c-hHHHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcc
Confidence 67999987554 456678999999999997431 1 11111 3467888887 4555455555443211111112
Q ss_pred eCChhhHHHHHHhhcC-CCCccEEEcchHHHHHH-----hhhh-hccCceEEEecCcccccC------chhHHHHHHH-h
Q psy10683 262 IGDQDARNAMIRDVMM-PGEWDVCITSYEMCIRE-----RGVF-KKFNWRYLVIDEAHRIKN------EKSKLSEIVR-E 327 (429)
Q Consensus 262 ~g~~~~~~~~~~~~~~-~~~~dvvitty~~l~~~-----~~~l-~~~~~~~vIiDEaH~~kn------~~s~~~~~~~-~ 327 (429)
--+..+|..++.+... .....++.+|.++...+ .+.| .+....++++||||.+.. |.....-.++ .
T Consensus 94 KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 2234456665555432 23445666676665443 2222 233567999999999843 2222222333 3
Q ss_pred ccCCcEEEEeCCccCCCHHHHHHHHhhhCC
Q psy10683 328 FKTTNRLLLTGTPLQNNLHELWALLNFLLP 357 (429)
Q Consensus 328 l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p 357 (429)
+.....++||||--..--+|+|..|.+-.|
T Consensus 174 ~~~vpwvALTATA~~~VqEDi~~qL~L~~P 203 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQEDIAFQLKLRNP 203 (641)
T ss_pred CCCCceEEeecccChhHHHHHHHHHhhcCc
Confidence 355667899999988888999999998776
No 124
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.89 E-value=5.7e-05 Score=81.46 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=96.8
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhh-cccCCCeEEEecc-chHHHHHHHHHhhcCCC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHY-RNIAGPHIVIVPK-STLLNWMNEFKKWCPTL 256 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~-~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~ 256 (429)
...+++|..+++........+.-.+|-.++|.|||..++..+.+.... .....+.+.|.|- +++.+-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 345889999998887765555467899999999999998888776664 2344556666677 55666777888777554
Q ss_pred ceEEE--eCChhhHHHHHHhh---c--------CCCCcc-EEEcchHHHHHH-----hhhhhccCceEEEecCcccccCc
Q psy10683 257 RAICL--IGDQDARNAMIRDV---M--------MPGEWD-VCITSYEMCIRE-----RGVFKKFNWRYLVIDEAHRIKNE 317 (429)
Q Consensus 257 ~~~~~--~g~~~~~~~~~~~~---~--------~~~~~d-vvitty~~l~~~-----~~~l~~~~~~~vIiDEaH~~kn~ 317 (429)
.+... ++.....-...... . ...-+. +++++.+.+... ...+..+...++|+||+|.+...
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 44444 44433221111100 0 000011 223333333211 01133345678999999999665
Q ss_pred -hhH-HHHHHHhc--cCCcEEEEeCCccC
Q psy10683 318 -KSK-LSEIVREF--KTTNRLLLTGTPLQ 342 (429)
Q Consensus 318 -~s~-~~~~~~~l--~~~~r~~lTgTP~~ 342 (429)
... ...++..+ .....+++|||+-.
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~ 382 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPP 382 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCH
Confidence 222 22333333 46788999999844
No 125
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.87 E-value=6.2e-06 Score=79.07 Aligned_cols=38 Identities=42% Similarity=0.745 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhH---------hcCcccchhhcccccchhhhhhccC
Q psy10683 39 YQVRGLNWMISLY---------ENGINGILADEMGLGKTLQTISLLG 76 (429)
Q Consensus 39 ~q~~g~~~~~~~~---------~~~~~~~l~~~~~~~k~~~~~~~~~ 76 (429)
||++|+.||+.++ ....||+|||+||+|||+++++++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~ 47 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS 47 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh
Confidence 8999999999998 6778999999999999999998864
No 126
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.86 E-value=0.00015 Score=77.76 Aligned_cols=138 Identities=18% Similarity=0.190 Sum_probs=86.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHH----HHHHHHHhhcCC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLL----NWMNEFKKWCPT 255 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~----qW~~e~~~~~~~ 255 (429)
.|+|+|...+.-+.. +.+.|..+.+|.|||+.++.-+..... . ..+++||+|+.-|. +|...+.+++ +
T Consensus 92 ~~tp~qvQ~I~~i~l----~~gvIAeaqTGeGKTLAf~LP~l~~aL-~--g~~v~IVTpTrELA~Qdae~m~~L~k~l-G 163 (970)
T PRK12899 92 DMVPYDVQILGAIAM----HKGFITEMQTGEGKTLTAVMPLYLNAL-T--GKPVHLVTVNDYLAQRDCEWVGSVLRWL-G 163 (970)
T ss_pred CCChHHHHHhhhhhc----CCCeEEEeCCCCChHHHHHHHHHHHHh-h--cCCeEEEeCCHHHHHHHHHHHHHHHhhc-C
Confidence 378999988865543 566777899999999987543332111 1 23578888885543 3777777776 4
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh---h--hh-----hccCceEEEecCcccccCchhHHHHHH
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER---G--VF-----KKFNWRYLVIDEAHRIKNEKSKLSEIV 325 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~---~--~l-----~~~~~~~vIiDEaH~~kn~~s~~~~~~ 325 (429)
+++.++.|........ .. -..||++.|...+.-+. . .+ ....+.++|||||..+--
T Consensus 164 LsV~~i~GG~~~~eq~-~~----y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi--------- 229 (970)
T PRK12899 164 LTTGVLVSGSPLEKRK-EI----YQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI--------- 229 (970)
T ss_pred CeEEEEeCCCCHHHHH-HH----cCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh---------
Confidence 7777777765543321 11 13689999987772221 1 11 112577999999988632
Q ss_pred HhccCCcEEEEeCCcc
Q psy10683 326 REFKTTNRLLLTGTPL 341 (429)
Q Consensus 326 ~~l~~~~r~~lTgTP~ 341 (429)
-.++.-+++||.+-
T Consensus 230 --DEArTPLIISg~~~ 243 (970)
T PRK12899 230 --DEARTPLIISGPGE 243 (970)
T ss_pred --hccCCceeeeCCCc
Confidence 12334467777653
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.85 E-value=0.00024 Score=77.46 Aligned_cols=84 Identities=23% Similarity=0.205 Sum_probs=57.7
Q ss_pred cccCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH--HHHHHH--
Q psy10683 175 YIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN--WMNEFK-- 250 (429)
Q Consensus 175 ~~~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q--W~~e~~-- 250 (429)
...+...|+-|.+-...+...+..+...++...+|+|||+..+.-+.. . ....+++|.||+..+.+ +.+++.
T Consensus 240 ~~~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~--~--~~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 240 ALLGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLA--Q--SDQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred ccCCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHH--h--cCCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 344678999999999989898888877888899999999876544222 1 12468899999966654 334444
Q ss_pred -hhcCCCceEEEeC
Q psy10683 251 -KWCPTLRAICLIG 263 (429)
Q Consensus 251 -~~~~~~~~~~~~g 263 (429)
+++ ++++....|
T Consensus 316 ~~~~-~~~~~~~kg 328 (820)
T PRK07246 316 QEVF-HIDCHSLKG 328 (820)
T ss_pred HHhc-CCcEEEEEC
Confidence 333 344444443
No 128
>KOG0335|consensus
Probab=97.85 E-value=7.7e-05 Score=74.27 Aligned_cols=155 Identities=17% Similarity=0.279 Sum_probs=101.2
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHH-HHHHHHhhhcc---------cCCCeEEEecc-chHHHHHH
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI-SLLGYMKHYRN---------IAGPHIVIVPK-STLLNWMN 247 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i-~~~~~l~~~~~---------~~~~~LIV~P~-~ll~qW~~ 247 (429)
....|+|+.++.-+ ..|++.+.+..+|+|||..-+ -++.++..... .....||++|. .|..|-.+
T Consensus 95 ~~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 35668888887533 446777888999999998764 34455544322 11235788898 78889999
Q ss_pred HHHhhc--CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccC---chhH
Q psy10683 248 EFKKWC--PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKN---EKSK 320 (429)
Q Consensus 248 e~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn---~~s~ 320 (429)
|..++. ...+..+.+|..+.+... ......+|++++|...+..-.+ .+.--+-.++|||||.++-. ..-.
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~---~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~ 247 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQL---RFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQ 247 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhh---hhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhcccccc
Confidence 999887 456777777775444322 2233678999999998865432 22222344999999999854 2233
Q ss_pred HHHHHHhc-----cCCcEEEEeCCc
Q psy10683 321 LSEIVREF-----KTTNRLLLTGTP 340 (429)
Q Consensus 321 ~~~~~~~l-----~~~~r~~lTgTP 340 (429)
+.+.+... .....+++|||=
T Consensus 248 Ir~iv~~~~~~~~~~~qt~mFSAtf 272 (482)
T KOG0335|consen 248 IRKIVEQLGMPPKNNRQTLLFSATF 272 (482)
T ss_pred HHHHhcccCCCCccceeEEEEeccC
Confidence 44444444 344568889983
No 129
>KOG4439|consensus
Probab=97.84 E-value=6.2e-06 Score=84.13 Aligned_cols=54 Identities=39% Similarity=0.537 Sum_probs=44.5
Q ss_pred ccccCCCCcccCCcccHHHHHHHHHHHHhHhcC-cccchhhcccccchhhhhhccC
Q psy10683 22 VSFENSPFYIKGGEMRDYQVRGLNWMISLYENG-INGILADEMGLGKTLQTISLLG 76 (429)
Q Consensus 22 ~~~~~~p~~~~~~~l~~~q~~g~~~~~~~~~~~-~~~~l~~~~~~~k~~~~~~~~~ 76 (429)
....+.|..+. ..|.|||+.|+.||.++..+. .||||||+||+|||+..|+++.
T Consensus 313 t~lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil 367 (901)
T KOG4439|consen 313 TDLTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLIL 367 (901)
T ss_pred ccccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHH
Confidence 34455666553 589999999999999888755 6899999999999999999874
No 130
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.82 E-value=1.2e-05 Score=88.81 Aligned_cols=45 Identities=56% Similarity=0.903 Sum_probs=41.7
Q ss_pred CCcccHHHHHHHHHHH-HhHhcCcccchhhcccccchhhhhhccCC
Q psy10683 33 GGEMRDYQVRGLNWMI-SLYENGINGILADEMGLGKTLQTISLLGP 77 (429)
Q Consensus 33 ~~~l~~~q~~g~~~~~-~~~~~~~~~~l~~~~~~~k~~~~~~~~~~ 77 (429)
...|||||.+|++||. ..+....||||||+||+|||+|+|+++.+
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~ 381 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS 381 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh
Confidence 3589999999999999 78889999999999999999999998864
No 131
>KOG0342|consensus
Probab=97.81 E-value=0.00017 Score=71.15 Aligned_cols=163 Identities=18% Similarity=0.265 Sum_probs=96.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHH-HHHh---hhcccCCCeEEEeccchH-HHHHHH---HHh
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL-GYMK---HYRNIAGPHIVIVPKSTL-LNWMNE---FKK 251 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~-~~l~---~~~~~~~~~LIV~P~~ll-~qW~~e---~~~ 251 (429)
.|-+-|...+.-++ .|...+.+.-+|+|||+..+--+ ..+. ...+..-.+|||||.--+ .|-..| +.+
T Consensus 104 ~MT~VQ~~ti~pll----~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLL----EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCccC----CCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 34455555543332 35677889999999998654322 2222 222223346899999444 554444 445
Q ss_pred hcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhc---cCceEEEecCcccccC--chhHHHHHHH
Q psy10683 252 WCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKK---FNWRYLVIDEAHRIKN--EKSKLSEIVR 326 (429)
Q Consensus 252 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~---~~~~~vIiDEaH~~kn--~~s~~~~~~~ 326 (429)
+.++..+.+..|...-+..... .. ...+++|+|...|......-.. ..-+++|+|||.++.. ..-.+-+.+.
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~k--l~-k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~ 256 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADK--LV-KGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIK 256 (543)
T ss_pred hCCCcceEEEeCCccchHHHHH--hh-ccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHH
Confidence 5567777777776654433221 11 2678999999888655332111 1336899999999843 3334455566
Q ss_pred hcc-CCcEEEEeCCccCCCHHHHHH
Q psy10683 327 EFK-TTNRLLLTGTPLQNNLHELWA 350 (429)
Q Consensus 327 ~l~-~~~r~~lTgTP~~n~~~dl~~ 350 (429)
.+. .+..+++|||- ...+.++..
T Consensus 257 ~lpk~rqt~LFSAT~-~~kV~~l~~ 280 (543)
T KOG0342|consen 257 ILPKQRQTLLFSATQ-PSKVKDLAR 280 (543)
T ss_pred hccccceeeEeeCCC-cHHHHHHHH
Confidence 664 44569999994 234444443
No 132
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.80 E-value=0.00045 Score=76.57 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=57.7
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHH-H-HHHH---HHh
Q psy10683 177 KGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLL-N-WMNE---FKK 251 (429)
Q Consensus 177 ~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~-q-W~~e---~~~ 251 (429)
.+...||-|.+-.+.+...+..+...++-..+|+|||+.-+--+.... ....++++|-+++..+. | +.++ +++
T Consensus 254 ~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a--~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~ 331 (928)
T PRK08074 254 PKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFA--KKKEEPVVISTYTIQLQQQLLEKDIPLLQK 331 (928)
T ss_pred CCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHh--hccCCeEEEEcCCHHHHHHHHHhhHHHHHH
Confidence 456899999999999999998888888889999999987754443222 23346777777775554 3 3444 344
Q ss_pred hcC-CCceEEEeC
Q psy10683 252 WCP-TLRAICLIG 263 (429)
Q Consensus 252 ~~~-~~~~~~~~g 263 (429)
.++ ++++.+..|
T Consensus 332 ~~~~~~~~~~lKG 344 (928)
T PRK08074 332 IFPFPVEAALLKG 344 (928)
T ss_pred HcCCCceEEEEEc
Confidence 443 355555544
No 133
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.79 E-value=2.9e-05 Score=69.88 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEE
Q psy10683 182 RDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICL 261 (429)
Q Consensus 182 r~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~ 261 (429)
-..|..+++.+. +..-.++....|+|||+.+++....+... +..++++|+-|..-...+. -+.|+...--+
T Consensus 6 ~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~l----GflpG~~~eK~ 76 (205)
T PF02562_consen 6 NEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDL----GFLPGDLEEKM 76 (205)
T ss_dssp SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT--------SS--------
T ss_pred CHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCcccc----ccCCCCHHHHH
Confidence 468999988776 34456778899999999999988777663 5555655555654332221 11221000000
Q ss_pred eCChhhHHHHHHh---------hcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCc
Q psy10683 262 IGDQDARNAMIRD---------VMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTN 332 (429)
Q Consensus 262 ~g~~~~~~~~~~~---------~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~ 332 (429)
..-...-...+.. ....+. |-+.+...++- ..+...+||+||||++.. ..+...+.++....
T Consensus 77 ~p~~~p~~d~l~~~~~~~~~~~~~~~~~--Ie~~~~~~iRG-----rt~~~~~iIvDEaQN~t~--~~~k~ilTR~g~~s 147 (205)
T PF02562_consen 77 EPYLRPIYDALEELFGKEKLEELIQNGK--IEIEPLAFIRG-----RTFDNAFIIVDEAQNLTP--EELKMILTRIGEGS 147 (205)
T ss_dssp -TTTHHHHHHHTTTS-TTCHHHHHHTTS--EEEEEGGGGTT-------B-SEEEEE-SGGG--H--HHHHHHHTTB-TT-
T ss_pred HHHHHHHHHHHHHHhChHhHHHHhhcCe--EEEEehhhhcC-----ccccceEEEEecccCCCH--HHHHHHHcccCCCc
Confidence 0000000000000 000111 22322222211 123458999999999743 45556677788889
Q ss_pred EEEEeCCccCCCHH
Q psy10683 333 RLLLTGTPLQNNLH 346 (429)
Q Consensus 333 r~~lTgTP~~n~~~ 346 (429)
+++++|=|.|.+..
T Consensus 148 kii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 148 KIIITGDPSQIDLP 161 (205)
T ss_dssp EEEEEE--------
T ss_pred EEEEecCceeecCC
Confidence 99999999877654
No 134
>KOG0947|consensus
Probab=97.77 E-value=9.9e-05 Score=77.99 Aligned_cols=141 Identities=21% Similarity=0.256 Sum_probs=92.6
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH-HHHHHHhhcCCC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN-WMNEFKKWCPTL 256 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q-W~~e~~~~~~~~ 256 (429)
...|-.+|++||..| +.|...++|.-+-.|||++|=..++... ....+++.-.|--.++| =.++|+.-+.+.
T Consensus 295 pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAialaq---~h~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALAQ---KHMTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHHH---hhccceEecchhhhhccchHHHHHHhcccc
Confidence 457889999998654 5688889999999999999854443221 22456677778855554 567888877665
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHH----hhhhhccCceEEEecCcccccCchhH-HHHHHHhc--c
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRE----RGVFKKFNWRYLVIDEAHRIKNEKSK-LSEIVREF--K 329 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~----~~~l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~l--~ 329 (429)
. ++.|....+ ....++|+|-+.+++- .+.++. ...||+||+|.+.+...- .+..+.-+ +
T Consensus 368 g--LlTGDvqin----------PeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHYiND~eRGvVWEEViIMlP~ 433 (1248)
T KOG0947|consen 368 G--LLTGDVQIN----------PEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHYINDVERGVVWEEVIIMLPR 433 (1248)
T ss_pred c--eeecceeeC----------CCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeeecccccccccceeeeeeccc
Confidence 5 555544321 3446889998887653 333444 446999999999663322 34433333 3
Q ss_pred CCcEEEEeCC
Q psy10683 330 TTNRLLLTGT 339 (429)
Q Consensus 330 ~~~r~~lTgT 339 (429)
-..-++||||
T Consensus 434 HV~~IlLSAT 443 (1248)
T KOG0947|consen 434 HVNFILLSAT 443 (1248)
T ss_pred cceEEEEecc
Confidence 3345888888
No 135
>KOG0383|consensus
Probab=97.76 E-value=8.6e-06 Score=84.87 Aligned_cols=58 Identities=45% Similarity=0.861 Sum_probs=51.9
Q ss_pred cccccCCCCccc--CCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccCCC
Q psy10683 21 IVSFENSPFYIK--GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGPK 78 (429)
Q Consensus 21 ~~~~~~~p~~~~--~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~~~ 78 (429)
.+....+|.++. ++.|.|||.+|++|+...|+.+..+||||+||+|||++.+.+..+.
T Consensus 279 ~v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl 338 (696)
T KOG0383|consen 279 PVPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSL 338 (696)
T ss_pred CCCcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeec
Confidence 556678888885 5799999999999999999999999999999999999999987653
No 136
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=97.74 E-value=0.0006 Score=71.52 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=76.2
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWC 253 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~ 253 (429)
|....|-|..|+--+.. |.|..+.+|.|||+++...+..... ....++||+|+.-|.+ |...+-+++
T Consensus 101 g~~p~~VQ~~~~~~ll~------G~Iae~~TGeGKTla~~lp~~~~al---~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 101 GQRHFDVQLMGGLALLS------GRLAEMQTGEGKTLTATLPAGTAAL---AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCCChHHHHHHHHHhC------CCeeeeeCCCCcHHHHHHHHHHHhh---cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 44556778887765542 3388899999999987644433222 2457899999977654 666666655
Q ss_pred CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHH-----hh-----------------------hhhccCceE
Q psy10683 254 PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRE-----RG-----------------------VFKKFNWRY 305 (429)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~-----~~-----------------------~l~~~~~~~ 305 (429)
++.+.+++|....... ... ...||++.|-..+.-+ .. ......+.+
T Consensus 172 -Glsv~~i~gg~~~~~r---~~~--y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 172 -GLTVGCVVEDQSPDER---RAA--YGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred -CCEEEEEeCCCCHHHH---HHH--cCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 5777777776432211 111 2458998885444322 11 112235789
Q ss_pred EEecCcccc
Q psy10683 306 LVIDEAHRI 314 (429)
Q Consensus 306 vIiDEaH~~ 314 (429)
+||||+..+
T Consensus 246 aIvDEvDSi 254 (656)
T PRK12898 246 AIVDEADSV 254 (656)
T ss_pred eEeecccce
Confidence 999999886
No 137
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.68 E-value=0.00036 Score=78.00 Aligned_cols=134 Identities=17% Similarity=0.121 Sum_probs=72.3
Q ss_pred HHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccch-----HHHHHHHHHhhcCCCceEEEeCCh
Q psy10683 193 ISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKST-----LLNWMNEFKKWCPTLRAICLIGDQ 265 (429)
Q Consensus 193 ~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~l-----l~qW~~e~~~~~~~~~~~~~~g~~ 265 (429)
+..+..+.-.|++.++|+|||.+.=.++..+ +......|+| |.-+ -.+-.+|+..-... .+-| ...
T Consensus 83 l~ai~~~~VviI~GeTGSGKTTqlPq~lle~----g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~--~VGY-~vr 155 (1294)
T PRK11131 83 LEAIRDHQVVIVAGETGSGKTTQLPKICLEL----GRGVKGLIGHTQPRRLAARTVANRIAEELETELGG--CVGY-KVR 155 (1294)
T ss_pred HHHHHhCCeEEEECCCCCCHHHHHHHHHHHc----CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcc--eece-eec
Confidence 3445566678889999999999743333221 1111224443 6533 33344445432211 1111 100
Q ss_pred hhHHHHHHhhcCCCCccEEEcchHHHHHHhhhh-hccCceEEEecCcc-cccCchhHHHHHHHhc----cCCcEEEEeCC
Q psy10683 266 DARNAMIRDVMMPGEWDVCITSYEMCIRERGVF-KKFNWRYLVIDEAH-RIKNEKSKLSEIVREF----KTTNRLLLTGT 339 (429)
Q Consensus 266 ~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l-~~~~~~~vIiDEaH-~~kn~~s~~~~~~~~l----~~~~r~~lTgT 339 (429)
+.+ .......|+++|...+......- .-..+++||||||| +.-+..-... .++.+ .....+++|||
T Consensus 156 ------f~~-~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg-~Lk~lL~~rpdlKvILmSAT 227 (1294)
T PRK11131 156 ------FND-QVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILG-YLKELLPRRPDLKVIITSAT 227 (1294)
T ss_pred ------Ccc-ccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHH-HHHHhhhcCCCceEEEeeCC
Confidence 000 11234579999999987764321 12357899999999 5555443332 23333 23467999999
Q ss_pred cc
Q psy10683 340 PL 341 (429)
Q Consensus 340 P~ 341 (429)
.-
T Consensus 228 id 229 (1294)
T PRK11131 228 ID 229 (1294)
T ss_pred CC
Confidence 83
No 138
>KOG0347|consensus
Probab=97.56 E-value=0.00042 Score=69.36 Aligned_cols=136 Identities=19% Similarity=0.261 Sum_probs=83.6
Q ss_pred eEeecCCCCCHHHHH-HHHHHHHhhh------------cccCCCeEEEecc-chHHHHHHHHHhhc--CCCceEEEeCCh
Q psy10683 202 GILADEMGLGKTLQT-ISLLGYMKHY------------RNIAGPHIVIVPK-STLLNWMNEFKKWC--PTLRAICLIGDQ 265 (429)
Q Consensus 202 ~ilad~~GlGKT~~~-i~~~~~l~~~------------~~~~~~~LIV~P~-~ll~qW~~e~~~~~--~~~~~~~~~g~~ 265 (429)
.+=|.++|+|||+.. |-++..+.+. .+...-.|||+|. .|..|-.+.|...+ +.+++..+.|.-
T Consensus 222 IlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGL 301 (731)
T KOG0347|consen 222 ILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGL 301 (731)
T ss_pred cccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechh
Confidence 444899999999753 3344322111 1111125999999 67777777777665 467788888876
Q ss_pred hhHHHHHHhhcCCCCccEEEcchHHHHHH----hhhhhcc-CceEEEecCcccc--cCchhHHHHHHHhcc------CCc
Q psy10683 266 DARNAMIRDVMMPGEWDVCITSYEMCIRE----RGVFKKF-NWRYLVIDEAHRI--KNEKSKLSEIVREFK------TTN 332 (429)
Q Consensus 266 ~~~~~~~~~~~~~~~~dvvitty~~l~~~----~~~l~~~-~~~~vIiDEaH~~--kn~~s~~~~~~~~l~------~~~ 332 (429)
......+ -.. ...+|||+|...|-.- ...+..+ ...++|+||+.++ ++.=..+.+.+..|. -..
T Consensus 302 avqKQqR-lL~--~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQ 378 (731)
T KOG0347|consen 302 AVQKQQR-LLN--QRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQ 378 (731)
T ss_pred HHHHHHH-HHh--cCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccc
Confidence 5433211 111 2678999997766432 2223333 3569999999998 333344556666553 223
Q ss_pred EEEEeCCc
Q psy10683 333 RLLLTGTP 340 (429)
Q Consensus 333 r~~lTgTP 340 (429)
.+++|||-
T Consensus 379 TlVFSATl 386 (731)
T KOG0347|consen 379 TLVFSATL 386 (731)
T ss_pred eEEEEEEe
Confidence 58999996
No 139
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=97.56 E-value=0.00049 Score=73.96 Aligned_cols=121 Identities=16% Similarity=0.108 Sum_probs=75.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhcCC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWCPT 255 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~~~ 255 (429)
..++-|+-|--.| ..|-|.-+.+|.|||+++...+..... ....++||+|+.-|.. |...+-+++ +
T Consensus 82 ~~ydvQliGg~~L------h~G~Iaem~TGeGKTL~a~Lpa~~~al---~G~~V~VvTpn~yLA~qd~e~m~~l~~~l-G 151 (896)
T PRK13104 82 RHFDVQLIGGMVL------HEGNIAEMRTGEGKTLVATLPAYLNAI---SGRGVHIVTVNDYLAKRDSQWMKPIYEFL-G 151 (896)
T ss_pred CcchHHHhhhhhh------ccCccccccCCCCchHHHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHhccc-C
Confidence 3344566655433 456788899999999976543332221 1346889999966543 777777766 4
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHH----hhhh-----hccCceEEEecCccccc
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRE----RGVF-----KKFNWRYLVIDEAHRIK 315 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~----~~~l-----~~~~~~~vIiDEaH~~k 315 (429)
+.+.++.|.......... -..||++.|...+.-+ .-.+ ....+.++|||||+.+-
T Consensus 152 Ltv~~i~gg~~~~~r~~~-----y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEA-----YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred ceEEEEeCCCCHHHHHHH-----hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 777777776443322111 1468999998876222 1111 12367899999999973
No 140
>KOG0951|consensus
Probab=97.54 E-value=0.00037 Score=75.72 Aligned_cols=148 Identities=20% Similarity=0.179 Sum_probs=85.8
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHH-HHHhhhcc-------cCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChhh
Q psy10683 197 ENGINGILADEMGLGKTLQTISLL-GYMKHYRN-------IAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQDA 267 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~-~~l~~~~~-------~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~~ 267 (429)
....+.+++.++|.|||..|+-.+ ..+....+ ....+.-|+|- +|+..|...|.++...+.+.+.--+.+.
T Consensus 323 ~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~ 402 (1674)
T KOG0951|consen 323 RGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDS 402 (1674)
T ss_pred cCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccc
Confidence 344567889999999999875443 33332222 12245667887 7778899999999977666665444332
Q ss_pred HHHHHHhhcCCCCccEEEcchHHH---HHHhhhhhcc-CceEEEecCcccccCch-----hHHHHHHHhc----cCCcEE
Q psy10683 268 RNAMIRDVMMPGEWDVCITSYEMC---IRERGVFKKF-NWRYLVIDEAHRIKNEK-----SKLSEIVREF----KTTNRL 334 (429)
Q Consensus 268 ~~~~~~~~~~~~~~dvvitty~~l---~~~~~~l~~~-~~~~vIiDEaH~~kn~~-----s~~~~~~~~l----~~~~r~ 334 (429)
.... . ....-.|+++|.+.. .++.....-. -++++|+||.|.+.... +...+..++. ...+-+
T Consensus 403 ~l~~-~---qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlV 478 (1674)
T KOG0951|consen 403 QLGK-E---QIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLV 478 (1674)
T ss_pred cchh-h---hhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceee
Confidence 2110 0 112335788886543 2222111111 35689999999993322 2223333333 345679
Q ss_pred EEeCCccCCCHHHHHH
Q psy10683 335 LLTGTPLQNNLHELWA 350 (429)
Q Consensus 335 ~lTgTP~~n~~~dl~~ 350 (429)
+||||-- |..|.-+
T Consensus 479 GLSATLP--Ny~DV~~ 492 (1674)
T KOG0951|consen 479 GLSATLP--NYEDVAS 492 (1674)
T ss_pred eecccCC--chhhhHH
Confidence 9999942 4455544
No 141
>KOG4284|consensus
Probab=97.51 E-value=0.00029 Score=71.72 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc-hHHHHHHHHHhhcC---CCce
Q psy10683 183 DYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS-TLLNWMNEFKKWCP---TLRA 258 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~-ll~qW~~e~~~~~~---~~~~ 258 (429)
+-|..||-... .+-.-|+..-.|+|||++...++..-.......-..+||+|.- +--|-.+-|.+.+| +++.
T Consensus 50 kiQaaAIP~~~----~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~c 125 (980)
T KOG4284|consen 50 KIQAAAIPAIF----SKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARC 125 (980)
T ss_pred chhhhhhhhhh----cccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcce
Confidence 45666664332 2445688999999999865333222222233334568899994 44555666666665 5788
Q ss_pred EEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh--hhhhccCceEEEecCcccccCchh---HHHHHHHhcc-CCc
Q psy10683 259 ICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER--GVFKKFNWRYLVIDEAHRIKNEKS---KLSEIVREFK-TTN 332 (429)
Q Consensus 259 ~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~--~~l~~~~~~~vIiDEaH~~kn~~s---~~~~~~~~l~-~~~ 332 (429)
.+|.|........ .......|+|-|...+..-. ..+.--..+++|+|||..+....+ .+...+..|. .+.
T Consensus 126 svfIGGT~~~~d~----~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQ 201 (980)
T KOG4284|consen 126 SVFIGGTAHKLDL----IRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQ 201 (980)
T ss_pred EEEecCchhhhhh----hhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhhe
Confidence 8999887654332 22245569999998886543 345555678999999999965444 3455666774 455
Q ss_pred EEEEeCCccCCCHHHH
Q psy10683 333 RLLLTGTPLQNNLHEL 348 (429)
Q Consensus 333 r~~lTgTP~~n~~~dl 348 (429)
.+++|||=-+ +++++
T Consensus 202 v~a~SATYp~-nLdn~ 216 (980)
T KOG4284|consen 202 VAAFSATYPR-NLDNL 216 (980)
T ss_pred eeEEeccCch-hHHHH
Confidence 6889999543 34443
No 142
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.50 E-value=0.0003 Score=58.62 Aligned_cols=116 Identities=22% Similarity=0.175 Sum_probs=61.4
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhccc--CCC-eEEEeccch-HHHHHHHHHhhcCCCceEEEeCChhhHHHHHHh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNI--AGP-HIVIVPKST-LLNWMNEFKKWCPTLRAICLIGDQDARNAMIRD 274 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~--~~~-~LIV~P~~l-l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~ 274 (429)
+..+++..+.|+|||..+-.++..+...... ..+ ..+-||... ...+..++...+...... ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~----------- 70 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQ----------- 70 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-----------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cC-----------
Confidence 3456788999999999998888766442111 112 234455544 344555554433110000 00
Q ss_pred hcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc--cCCcEEEEeCCc
Q psy10683 275 VMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF--KTTNRLLLTGTP 340 (429)
Q Consensus 275 ~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l--~~~~r~~lTgTP 340 (429)
+..+....-...+....-.+|||||+|++. +......++.+ .....++++|||
T Consensus 71 -----------~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 71 -----------TSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp ------------HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred -----------CHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 001111111222333333789999999984 25555566655 666789999999
No 143
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.43 E-value=0.00078 Score=70.83 Aligned_cols=135 Identities=18% Similarity=0.145 Sum_probs=85.9
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----H----HHHH-HhhcCCCceEEEeCChhhHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----W----MNEF-KKWCPTLRAICLIGDQDARNA 270 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W----~~e~-~~~~~~~~~~~~~g~~~~~~~ 270 (429)
.++=+-+|+|+|||.+-+-++-.|... ....+++||||+..+.. - .+.| ..++.+.+.-.|.......
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~-YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~-- 151 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKK-YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIE-- 151 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHH-hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHH--
Confidence 356678999999999999988877663 33457899999955432 1 2233 3333332222222211111
Q ss_pred HHHhhcCCCCccEEEcchHHHHHH---hhh---------------------hhccCceEEEecCcccccCchhHHHHHHH
Q psy10683 271 MIRDVMMPGEWDVCITSYEMCIRE---RGV---------------------FKKFNWRYLVIDEAHRIKNEKSKLSEIVR 326 (429)
Q Consensus 271 ~~~~~~~~~~~dvvitty~~l~~~---~~~---------------------l~~~~~~~vIiDEaH~~kn~~s~~~~~~~ 326 (429)
.......+...|++.+.+.+.++ ... +... -.+||+||-|++... .+.+.++.
T Consensus 152 -~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~-rPIvIvDEPh~f~~~-~k~~~~i~ 228 (985)
T COG3587 152 -KFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASM-RPIVIVDEPHRFLGD-DKTYGAIK 228 (985)
T ss_pred -HHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhc-CCEEEecChhhcccc-hHHHHHHH
Confidence 12233345567888888777665 111 1111 237999999999765 78888999
Q ss_pred hccCCcEEEEeCCc
Q psy10683 327 EFKTTNRLLLTGTP 340 (429)
Q Consensus 327 ~l~~~~r~~lTgTP 340 (429)
.+.+...+-.+||-
T Consensus 229 ~l~pl~ilRfgATf 242 (985)
T COG3587 229 QLNPLLILRFGATF 242 (985)
T ss_pred hhCceEEEEecccc
Confidence 99998888888884
No 144
>KOG0328|consensus
Probab=97.43 E-value=0.00063 Score=62.79 Aligned_cols=166 Identities=19% Similarity=0.235 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEeccchHHHHHHH-HHhhcC--CCce
Q psy10683 183 DYQVRGLNWMISLYENGINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE-FKKWCP--TLRA 258 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e-~~~~~~--~~~~ 258 (429)
.-|..|+--++ +|++.|.....|+|||.+. |+++..+.- .......||+.|.--+.....+ +..... +..+
T Consensus 52 ~IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~-~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~ 126 (400)
T KOG0328|consen 52 AIQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDI-SVRETQALILSPTRELAVQIQKVILALGDYMNVQC 126 (400)
T ss_pred HHHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeeccc-ccceeeEEEecChHHHHHHHHHHHHHhcccccceE
Confidence 35777775444 4788899999999999753 444433322 2333467999999555444444 443333 3455
Q ss_pred EEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHH--hhhhhccCceEEEecCcccccC--chhHHHHHHHhcc-CCcE
Q psy10683 259 ICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRE--RGVFKKFNWRYLVIDEAHRIKN--EKSKLSEIVREFK-TTNR 333 (429)
Q Consensus 259 ~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~--~~~l~~~~~~~vIiDEaH~~kn--~~s~~~~~~~~l~-~~~r 333 (429)
....|.+.....+.. .. -..+||.-|...+..- ...|......++|+|||..+.| ...+.+...+.++ ....
T Consensus 127 hacigg~n~gedikk-ld--~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qv 203 (400)
T KOG0328|consen 127 HACIGGKNLGEDIKK-LD--YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQV 203 (400)
T ss_pred EEEecCCccchhhhh-hc--ccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceE
Confidence 556665543322211 11 2346777776655432 3345666788999999999844 5567888888886 6778
Q ss_pred EEEeCCccCCCHHHHHHHHhhhCCCCC
Q psy10683 334 LLLTGTPLQNNLHELWALLNFLLPDIF 360 (429)
Q Consensus 334 ~~lTgTP~~n~~~dl~~ll~fl~p~~~ 360 (429)
+++|||- +.|+..+.++..+++.
T Consensus 204 v~~SATl----p~eilemt~kfmtdpv 226 (400)
T KOG0328|consen 204 VLVSATL----PHEILEMTEKFMTDPV 226 (400)
T ss_pred EEEeccC----cHHHHHHHHHhcCCce
Confidence 8999996 4677777777777664
No 145
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.43 E-value=0.0011 Score=70.27 Aligned_cols=125 Identities=7% Similarity=-0.022 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChhhH--HHHHHhhcCCCCccEE
Q psy10683 208 MGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQDAR--NAMIRDVMMPGEWDVC 284 (429)
Q Consensus 208 ~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~dvv 284 (429)
.|+|||-..+.++...... .+.+||++|. ++..|+...|+..+++..+.++++..... ...... ...+...||
T Consensus 169 ~GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~-~~~G~~~IV 244 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLA-VLRGQARVV 244 (665)
T ss_pred CCCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHH-HhCCCCcEE
Confidence 4999999999988776552 5568999999 78899999999999866788888754433 222222 234677899
Q ss_pred EcchHHHHHHhhhhhccCceEEEecCcccc--cCchhH------HHHHHHhccCCcEEEEeCCcc
Q psy10683 285 ITSYEMCIRERGVFKKFNWRYLVIDEAHRI--KNEKSK------LSEIVREFKTTNRLLLTGTPL 341 (429)
Q Consensus 285 itty~~l~~~~~~l~~~~~~~vIiDEaH~~--kn~~s~------~~~~~~~l~~~~r~~lTgTP~ 341 (429)
|-|...+.. .--+..+|||||=|.- +...+. .............++.|+||-
T Consensus 245 iGtRSAvFa-----P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 245 VGTRSAVFA-----PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred EEcceeEEe-----ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 999876522 2225679999999974 333221 111222335666788899994
No 146
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.41 E-value=0.00094 Score=65.92 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=53.7
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHH-HHHhhc-CCCceEEEeCChhhHHHHHHhhcCCC
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMN-EFKKWC-PTLRAICLIGDQDARNAMIRDVMMPG 279 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~-e~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~ 279 (429)
.++.-..|+|||+.++.++..+.. .......+++|+...+.+... .+.... +.
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~------------------------ 58 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKYNPK------------------------ 58 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhc-cccCCceEEEEecchHHHHHHHHHhhhcccc------------------------
Confidence 356678999999999999988722 233556788888876666443 343322 00
Q ss_pred CccEEEcchHHHHHHhh--hhhccCceEEEecCcccccC
Q psy10683 280 EWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKN 316 (429)
Q Consensus 280 ~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn 316 (429)
.....+.....+..... ......+++|||||||++..
T Consensus 59 ~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 01112222222222211 22344689999999999966
No 147
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.40 E-value=0.0032 Score=59.13 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=71.2
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWC 253 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~ 253 (429)
+..+++-|+-|+-.| ..|-|.-..+|=|||+++...+ ++... ..+++=||+.+..|.. |...|-+++
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a-~~~AL--~G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPA-ALNAL--QGKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHH-HHHHT--TSS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHH-HHHHH--hcCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 445666777776544 3356889999999999885443 33221 2456778888877754 888887777
Q ss_pred CCCceEEEeCChh--hHHHHHHhhcCCCCccEEEcchHHHHHHh---------hhhhccCceEEEecCcccc
Q psy10683 254 PTLRAICLIGDQD--ARNAMIRDVMMPGEWDVCITSYEMCIRER---------GVFKKFNWRYLVIDEAHRI 314 (429)
Q Consensus 254 ~~~~~~~~~g~~~--~~~~~~~~~~~~~~~dvvitty~~l~~~~---------~~l~~~~~~~vIiDEaH~~ 314 (429)
++.+-....... .|.... ..||+-+|-..+..+. .......++++||||+..+
T Consensus 146 -Glsv~~~~~~~~~~~r~~~Y-------~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 146 -GLSVGIITSDMSSEERREAY-------AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp -T--EEEEETTTEHHHHHHHH-------HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred -hhccccCccccCHHHHHHHH-------hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 556655555432 222221 2468888876665441 1112346889999999876
No 148
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.39 E-value=0.0024 Score=68.59 Aligned_cols=64 Identities=14% Similarity=0.010 Sum_probs=42.3
Q ss_pred cCCCChHHHHHHHHHHHHHHhcC-----CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH
Q psy10683 177 KGGEMRDYQVRGLNWMISLYENG-----INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL 242 (429)
Q Consensus 177 ~~~~Lr~~Q~~~v~~l~~~~~~~-----~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll 242 (429)
.+...|+-|.+....+...+... ..+++-..+|+|||+.-+.-+..... ...++++|-+.+..|
T Consensus 22 ~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~--~~~k~vVIST~T~~L 90 (697)
T PRK11747 22 PGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIAR--AEKKKLVISTATVAL 90 (697)
T ss_pred CCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHH--HcCCeEEEEcCCHHH
Confidence 35688999999999888888763 45677789999999877554433222 123444444444333
No 149
>KOG0948|consensus
Probab=97.38 E-value=0.00054 Score=70.91 Aligned_cols=140 Identities=14% Similarity=0.214 Sum_probs=87.8
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHH-HHHHHhhhcccCCCeEEEeccchH-HHHHHHHHhhcCC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS-LLGYMKHYRNIAGPHIVIVPKSTL-LNWMNEFKKWCPT 255 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~-~~~~l~~~~~~~~~~LIV~P~~ll-~qW~~e~~~~~~~ 255 (429)
...|-|+|..+|. ..+++...++..-+-.|||++|-- ++..++. ..+++.-.|--.+ +|=.+|+..-+.+
T Consensus 127 PF~LDpFQ~~aI~----Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~----kQRVIYTSPIKALSNQKYREl~~EF~D 198 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIK----CIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE----KQRVIYTSPIKALSNQKYRELLEEFKD 198 (1041)
T ss_pred CcccCchHhhhhh----hhcCCceEEEEeecCCCcchHHHHHHHHHHHh----cCeEEeeChhhhhcchhHHHHHHHhcc
Confidence 3578999999985 446677888877799999998844 3334433 3455666677444 5556777665544
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHH----HhhhhhccCceEEEecCcccccCchhH-HHH-HHHhc-
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIR----ERGVFKKFNWRYLVIDEAHRIKNEKSK-LSE-IVREF- 328 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~----~~~~l~~~~~~~vIiDEaH~~kn~~s~-~~~-~~~~l- 328 (429)
. -+..|.... ..+...+|+|-+.|++ ....++.+.| ||+||.|.++..... .|. .+--+
T Consensus 199 V--GLMTGDVTI----------nP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP 264 (1041)
T KOG0948|consen 199 V--GLMTGDVTI----------NPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLP 264 (1041)
T ss_pred c--ceeecceee----------CCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEecc
Confidence 3 333343221 1234467777777654 3455666666 999999999874432 122 22223
Q ss_pred cCCcEEEEeCC
Q psy10683 329 KTTNRLLLTGT 339 (429)
Q Consensus 329 ~~~~r~~lTgT 339 (429)
...+-++||||
T Consensus 265 ~~vr~VFLSAT 275 (1041)
T KOG0948|consen 265 DNVRFVFLSAT 275 (1041)
T ss_pred ccceEEEEecc
Confidence 45566889999
No 150
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.37 E-value=0.0034 Score=56.55 Aligned_cols=125 Identities=19% Similarity=0.241 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHHHHhcCC-CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCce
Q psy10683 180 EMRDYQVRGLNWMISLYENGI-NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRA 258 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~-~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~ 258 (429)
+|.+-|.+++..++. ++. -.++.-..|+|||...-.+...+.. ....+++++|.+--.. ++.+-.. ...
T Consensus 1 ~L~~~Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~---~g~~v~~~apT~~Aa~---~L~~~~~-~~a 70 (196)
T PF13604_consen 1 TLNEEQREAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEA---AGKRVIGLAPTNKAAK---ELREKTG-IEA 70 (196)
T ss_dssp -S-HHHHHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHH---TT--EEEEESSHHHHH---HHHHHHT-S-E
T ss_pred CCCHHHHHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHh---CCCeEEEECCcHHHHH---HHHHhhC-cch
Confidence 367899999987753 333 3677889999999876666555544 2467888889864332 2222210 001
Q ss_pred EEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhh------hccCceEEEecCcccccCchhHHHHHHHhccC-C
Q psy10683 259 ICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF------KKFNWRYLVIDEAHRIKNEKSKLSEIVREFKT-T 331 (429)
Q Consensus 259 ~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l------~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~-~ 331 (429)
.|...+....... .....++||||||..+.. ......+..+.. .
T Consensus 71 ---------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~--~~~~~ll~~~~~~~ 121 (196)
T PF13604_consen 71 ---------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS--RQLARLLRLAKKSG 121 (196)
T ss_dssp ---------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH--HHHHHHHHHS-T-T
T ss_pred ---------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccCH--HHHHHHHHHHHhcC
Confidence 1111111000000 023456999999999854 445555555544 6
Q ss_pred cEEEEeCCccCC
Q psy10683 332 NRLLLTGTPLQN 343 (429)
Q Consensus 332 ~r~~lTgTP~~n 343 (429)
.++++.|-|.|-
T Consensus 122 ~klilvGD~~QL 133 (196)
T PF13604_consen 122 AKLILVGDPNQL 133 (196)
T ss_dssp -EEEEEE-TTSH
T ss_pred CEEEEECCcchh
Confidence 799999998763
No 151
>KOG0340|consensus
Probab=97.36 E-value=0.0012 Score=62.97 Aligned_cols=157 Identities=18% Similarity=0.270 Sum_probs=95.6
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEeccchH-HHHHHHHHhh--cCCC
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPKSTL-LNWMNEFKKW--CPTL 256 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~~ll-~qW~~e~~~~--~~~~ 256 (429)
.-|-|..++-.++. |+.||=+.-+|+|||... +-++..+.. ....-=.||+.|..-+ -|-.+.|.-. .-.+
T Consensus 30 pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLse-dP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 30 PTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSE-DPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhcc-CCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 34778888876665 888999999999999743 333444433 2222334888998544 4444445432 2357
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh------hhccCceEEEecCcccccCchhHHHHHHH----
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV------FKKFNWRYLVIDEAHRIKNEKSKLSEIVR---- 326 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~------l~~~~~~~vIiDEaH~~kn~~s~~~~~~~---- 326 (429)
++.+++|..+.- .....-..+.++|++|.+.+...... ..-.+..++|+|||.++.+.. ....+.
T Consensus 105 K~~vivGG~d~i---~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~--f~d~L~~i~e 179 (442)
T KOG0340|consen 105 KVSVIVGGTDMI---MQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC--FPDILEGIEE 179 (442)
T ss_pred eEEEEEccHHHh---hhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc--hhhHHhhhhc
Confidence 888888876643 22333446788999999877543221 111245689999999986642 222232
Q ss_pred hccCC-cEEEEeCCccCCCHHHH
Q psy10683 327 EFKTT-NRLLLTGTPLQNNLHEL 348 (429)
Q Consensus 327 ~l~~~-~r~~lTgTP~~n~~~dl 348 (429)
.+... -.+++|+|- .++...+
T Consensus 180 ~lP~~RQtLlfSATi-td~i~ql 201 (442)
T KOG0340|consen 180 CLPKPRQTLLFSATI-TDTIKQL 201 (442)
T ss_pred cCCCccceEEEEeeh-hhHHHHh
Confidence 23333 569999984 3333333
No 152
>PRK10536 hypothetical protein; Provisional
Probab=97.35 E-value=0.0028 Score=58.85 Aligned_cols=144 Identities=15% Similarity=0.122 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCc---
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR--- 257 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~--- 257 (429)
....|...+.++.. ....++..+.|+|||..++++....... +.... ++|+-+.+-. .|.-.|.|+..
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~k-IiI~RP~v~~---ge~LGfLPG~~~eK 130 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIH-KDVDR-IIVTRPVLQA---DEDLGFLPGDIAEK 130 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeE-EEEeCCCCCc---hhhhCcCCCCHHHH
Confidence 44678777776643 4567788999999999999988754321 22223 3333222211 23333333210
Q ss_pred eEE-----------EeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHH
Q psy10683 258 AIC-----------LIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR 326 (429)
Q Consensus 258 ~~~-----------~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~ 326 (429)
... +.+... .........-.|-+.+...++.. .+.-++|||||||++.- ......+.
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~-----~~~~~~~~~~~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~~--~~~k~~lt 198 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASF-----MQYCLRPEIGKVEIAPFAYMRGR-----TFENAVVILDEAQNVTA--AQMKMFLT 198 (262)
T ss_pred HHHHHHHHHHHHHHHhChHH-----HHHHHHhccCcEEEecHHHhcCC-----cccCCEEEEechhcCCH--HHHHHHHh
Confidence 000 001100 00000001122445554444321 12447999999999854 56667778
Q ss_pred hccCCcEEEEeCCccCCCH
Q psy10683 327 EFKTTNRLLLTGTPLQNNL 345 (429)
Q Consensus 327 ~l~~~~r~~lTgTP~~n~~ 345 (429)
++....+++++|-|-|.++
T Consensus 199 R~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 199 RLGENVTVIVNGDITQCDL 217 (262)
T ss_pred hcCCCCEEEEeCChhhccC
Confidence 8899999999999976654
No 153
>KOG1513|consensus
Probab=97.34 E-value=0.00095 Score=69.46 Aligned_cols=238 Identities=16% Similarity=0.224 Sum_probs=122.5
Q ss_pred ccCCCChHHHHHHHHHHHHHHhc----CC--CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE-eccchHHHHHHH
Q psy10683 176 IKGGEMRDYQVRGLNWMISLYEN----GI--NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI-VPKSTLLNWMNE 248 (429)
Q Consensus 176 ~~~~~Lr~~Q~~~v~~l~~~~~~----~~--~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV-~P~~ll~qW~~e 248 (429)
+..+.|-..|+++|.+..+..+. |. |-++.|.-|.||-.++.++|-.-.. ++ .++.|++ +.+-|-..-.+.
T Consensus 260 i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyL-kG-RKrAlW~SVSsDLKfDAERD 337 (1300)
T KOG1513|consen 260 IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYL-KG-RKRALWFSVSSDLKFDAERD 337 (1300)
T ss_pred CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhh-cc-cceeEEEEeccccccchhhc
Confidence 34578999999999988766542 22 3477888888887666555422211 23 3345555 566666556666
Q ss_pred HHhhc-CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--------hhhcc------Cc-eEEEecCcc
Q psy10683 249 FKKWC-PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--------VFKKF------NW-RYLVIDEAH 312 (429)
Q Consensus 249 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--------~l~~~------~~-~~vIiDEaH 312 (429)
+.... +.+.|..+..-+- .++-......-+--|+++||..|..+.. .+... .| .+||+||||
T Consensus 338 L~DigA~~I~V~alnK~KY--akIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECH 415 (1300)
T KOG1513|consen 338 LRDIGATGIAVHALNKFKY--AKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECH 415 (1300)
T ss_pred hhhcCCCCccceehhhccc--ccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhh
Confidence 66543 2333332211000 0000000111123499999999875532 11111 22 588999999
Q ss_pred cccC-------chhHHHHHHHh----ccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCCh---HHHHhhhcccccCCC
Q psy10683 313 RIKN-------EKSKLSEIVRE----FKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSS---DDFDSWFNTEEFMGD 378 (429)
Q Consensus 313 ~~kn-------~~s~~~~~~~~----l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~---~~f~~~~~~~~~~~~ 378 (429)
+.|| ..++..+++.. |...+.+.-|||-... =-++....+.+.++.. .+|.+.+..-++.+-
T Consensus 416 kAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsE----PrNMaYM~RLGlWGegtaf~eF~eFi~AvEkRGv 491 (1300)
T KOG1513|consen 416 KAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASE----PRNMAYMVRLGLWGEGTAFPEFEEFIHAVEKRGV 491 (1300)
T ss_pred hhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCC----cchhhhhhhhccccCCCcCccHHHHHHHHHhcCC
Confidence 9988 33455555544 4566677788885321 1222333344444432 233333332222221
Q ss_pred hhHHH--HHHHHhhhhhhhhchhHHhhcCCCceEEEEEEcCCHHHHHHHHH
Q psy10683 379 HSIIE--RLHSVLKPFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTK 427 (429)
Q Consensus 379 ~~~~~--~L~~~l~~~~lRr~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y~~ 427 (429)
.+++ ..--.++...+-| .+ .+..-...+-.|+||++=+++|+.
T Consensus 492 -GAMEIVAMDMK~rGmYiAR---QL--SFkgVsFrieEv~ls~eF~k~Yn~ 536 (1300)
T KOG1513|consen 492 -GAMEIVAMDMKLRGMYIAR---QL--SFKGVSFRIEEVPLSKEFRKVYNR 536 (1300)
T ss_pred -ceeeeeehhhhhhhhhhhh---hc--cccCceEEEEecccCHHHHHHHHH
Confidence 1111 0111122221111 11 133344667889999999999985
No 154
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.30 E-value=0.0025 Score=71.64 Aligned_cols=138 Identities=14% Similarity=0.071 Sum_probs=72.6
Q ss_pred HHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHH-HHHHHHHhhcC-C-CceEEEeCChh
Q psy10683 192 MISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLL-NWMNEFKKWCP-T-LRAICLIGDQD 266 (429)
Q Consensus 192 l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~-qW~~e~~~~~~-~-~~~~~~~g~~~ 266 (429)
++..+..+.-.|++.++|+|||.+.=.++... +......|+| |.-+.. .....+.+-.. . ...+-|.-..+
T Consensus 75 Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~----~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~ 150 (1283)
T TIGR01967 75 IAEAIAENQVVIIAGETGSGKTTQLPKICLEL----GRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH 150 (1283)
T ss_pred HHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc----CCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC
Confidence 34555667778999999999999764443221 1111224443 664432 22333333221 1 12222211111
Q ss_pred hHHHHHHhhcCCCCccEEEcchHHHHHHhhhhh-ccCceEEEecCcc-cccCchhHHH---HHHHhccCCcEEEEeCCcc
Q psy10683 267 ARNAMIRDVMMPGEWDVCITSYEMCIRERGVFK-KFNWRYLVIDEAH-RIKNEKSKLS---EIVREFKTTNRLLLTGTPL 341 (429)
Q Consensus 267 ~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~-~~~~~~vIiDEaH-~~kn~~s~~~---~~~~~l~~~~r~~lTgTP~ 341 (429)
.. ...+-.|.++|...+.+....-. -..+++|||||+| +.-+..-... +.+........++||||.-
T Consensus 151 ~~--------~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATld 222 (1283)
T TIGR01967 151 DQ--------VSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATID 222 (1283)
T ss_pred cc--------cCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCcC
Confidence 11 11234689999988876543211 1257899999999 4555443322 2222223446799999984
No 155
>KOG0334|consensus
Probab=97.21 E-value=0.001 Score=71.49 Aligned_cols=153 Identities=20% Similarity=0.372 Sum_probs=92.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHH-HHHHHHhhhcc---cCCCe-EEEecc-chHHH---HHHHHH
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI-SLLGYMKHYRN---IAGPH-IVIVPK-STLLN---WMNEFK 250 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i-~~~~~l~~~~~---~~~~~-LIV~P~-~ll~q---W~~e~~ 250 (429)
..+|-|..|+-.+ -.|..+|-...+|+|||+..+ -.+......+. ..+|+ ||+||. .+..| |.+-|.
T Consensus 387 k~~~IQ~qAiP~I----msGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~ 462 (997)
T KOG0334|consen 387 KPTPIQAQAIPAI----MSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFL 462 (997)
T ss_pred CCcchhhhhcchh----ccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHH
Confidence 5667777776444 347788999999999998763 33333333221 23666 677899 55555 555555
Q ss_pred hhcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHH----HHHHhhhhhcc-CceEEEecCcccc--cCchhHHHH
Q psy10683 251 KWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEM----CIRERGVFKKF-NWRYLVIDEAHRI--KNEKSKLSE 323 (429)
Q Consensus 251 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~----l~~~~~~l~~~-~~~~vIiDEaH~~--kn~~s~~~~ 323 (429)
+. -+++++..+|....... +..... + .+|+|+|... +..+...+.+. .-.++|+|||.++ +...-+.++
T Consensus 463 k~-l~ir~v~vygg~~~~~q-iaelkR-g-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 463 KL-LGIRVVCVYGGSGISQQ-IAELKR-G-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred hh-cCceEEEecCCccHHHH-HHHHhc-C-CceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccch
Confidence 55 35666666665543322 222222 3 5688887544 44444444433 3558999999998 333445566
Q ss_pred HHHhccCCc-EEEEeCCc
Q psy10683 324 IVREFKTTN-RLLLTGTP 340 (429)
Q Consensus 324 ~~~~l~~~~-r~~lTgTP 340 (429)
.+..+...+ .++.|+|-
T Consensus 539 Ii~nlrpdrQtvlfSatf 556 (997)
T KOG0334|consen 539 ILQNLRPDRQTVLFSATF 556 (997)
T ss_pred HHhhcchhhhhhhhhhhh
Confidence 777775554 45667774
No 156
>KOG0339|consensus
Probab=97.18 E-value=0.0058 Score=60.93 Aligned_cols=135 Identities=21% Similarity=0.263 Sum_probs=82.7
Q ss_pred EeecCCCCCHHHHHHH-HHHHHhhh---cccCCCeE-EEecc-chHHHHHHHHHhhcC--CCceEEEeCChhhHHHHHHh
Q psy10683 203 ILADEMGLGKTLQTIS-LLGYMKHY---RNIAGPHI-VIVPK-STLLNWMNEFKKWCP--TLRAICLIGDQDARNAMIRD 274 (429)
Q Consensus 203 ilad~~GlGKT~~~i~-~~~~l~~~---~~~~~~~L-IV~P~-~ll~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~ 274 (429)
|=-.-+|+|||-..+- .+.++... ....+|++ |+||. .+..|-..|.++|+. +++++..||....... ...
T Consensus 264 igIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ-~k~ 342 (731)
T KOG0339|consen 264 IGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQ-SKE 342 (731)
T ss_pred hheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHH-HHh
Confidence 3345589999965432 12222222 23457875 55788 777888899999863 5777777765543222 122
Q ss_pred hcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccC--chhHHHHHHHhccCC-cEEEEeCCc
Q psy10683 275 VMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKN--EKSKLSEIVREFKTT-NRLLLTGTP 340 (429)
Q Consensus 275 ~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn--~~s~~~~~~~~l~~~-~r~~lTgTP 340 (429)
.. ....+||+|.+.+..-.. ...-.+-.++|+|||.++-. ...+...++..++.. ..+++|+|-
T Consensus 343 Lk--~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf 411 (731)
T KOG0339|consen 343 LK--EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF 411 (731)
T ss_pred hh--cCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc
Confidence 22 456799999998865432 12223457899999999843 334445555666554 457788884
No 157
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.15 E-value=0.0022 Score=68.93 Aligned_cols=119 Identities=19% Similarity=0.122 Sum_probs=73.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhcCC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWCPT 255 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~~~ 255 (429)
..++-|+-|---| ..|.|.-+.+|.|||+++...+ ++.. -....+-||+|+..|.. |...+-+++ +
T Consensus 82 ~~ydVQliGg~~L------h~G~iaEM~TGEGKTLvA~l~a-~l~a--l~G~~VhvvT~ndyLA~RD~e~m~~l~~~l-G 151 (913)
T PRK13103 82 RHFDVQLIGGMTL------HEGKIAEMRTGEGKTLVGTLAV-YLNA--LSGKGVHVVTVNDYLARRDANWMRPLYEFL-G 151 (913)
T ss_pred CcchhHHHhhhHh------ccCccccccCCCCChHHHHHHH-HHHH--HcCCCEEEEeCCHHHHHHHHHHHHHHhccc-C
Confidence 3445576664333 4577888999999999764332 2221 23456788899977755 666666655 5
Q ss_pred CceEEEeCChhh--HHHHHHhhcCCCCccEEEcchHHH-----HHHhh----hhhccCceEEEecCccccc
Q psy10683 256 LRAICLIGDQDA--RNAMIRDVMMPGEWDVCITSYEMC-----IRERG----VFKKFNWRYLVIDEAHRIK 315 (429)
Q Consensus 256 ~~~~~~~g~~~~--~~~~~~~~~~~~~~dvvitty~~l-----~~~~~----~l~~~~~~~vIiDEaH~~k 315 (429)
+.+.++.+.... |+.. -..||++.|...+ +.+.. ......+.++||||+|.+-
T Consensus 152 l~v~~i~~~~~~~err~~-------Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 152 LSVGIVTPFQPPEEKRAA-------YAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred CEEEEECCCCCHHHHHHH-------hcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 667666665432 2222 1268999887765 33221 1223468899999999973
No 158
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.11 E-value=0.0017 Score=65.04 Aligned_cols=69 Identities=22% Similarity=0.353 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhcCCC-eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCce
Q psy10683 184 YQVRGLNWMISLYENGIN-GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRA 258 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~~~-~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~ 258 (429)
-|-.|+.-|.....+|.. -.|-..+|+|||.++..+|+.. .+|+||++|+ .|-.|-..||+.|+|.-.|
T Consensus 16 DQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~------~rPtLV~AhNKTLAaQLy~Efk~fFP~NaV 86 (663)
T COG0556 16 DQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKV------QRPTLVLAHNKTLAAQLYSEFKEFFPENAV 86 (663)
T ss_pred CcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHh------CCCeEEEecchhHHHHHHHHHHHhCcCcce
Confidence 477899988888877664 4677789999999998888644 5599999999 6778899999999997444
No 159
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=97.08 E-value=0.0035 Score=67.39 Aligned_cols=121 Identities=16% Similarity=0.097 Sum_probs=73.7
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhcC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWCP 254 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~~ 254 (429)
...++-|+-|.-.| ..|.|.-+.+|.|||+++...+. +.... .+.+-||+|+..|.. |...+-+++
T Consensus 80 ~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~-l~aL~--G~~V~IvTpn~yLA~rd~e~~~~l~~~L- 149 (830)
T PRK12904 80 MRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAY-LNALT--GKGVHVVTVNDYLAKRDAEWMGPLYEFL- 149 (830)
T ss_pred CCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHH-HHHHc--CCCEEEEecCHHHHHHHHHHHHHHHhhc-
Confidence 34455677665433 34678889999999997654332 21112 234668999977654 666665555
Q ss_pred CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh---------hhhhccCceEEEecCcccc
Q psy10683 255 TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER---------GVFKKFNWRYLVIDEAHRI 314 (429)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~---------~~l~~~~~~~vIiDEaH~~ 314 (429)
++.+.+..|......... . -..||++.|...+.-+. +.+....+.++|||||..+
T Consensus 150 Glsv~~i~~~~~~~er~~--~---y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 150 GLSVGVILSGMSPEERRE--A---YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred CCeEEEEcCCCCHHHHHH--h---cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 567777776544332111 1 13689999977763221 1122346789999999886
No 160
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=97.07 E-value=0.0059 Score=65.77 Aligned_cols=145 Identities=18% Similarity=0.154 Sum_probs=86.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhcCCC
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWCPTL 256 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~~~~ 256 (429)
.++-|+-|---| ..|-|.-+.+|.|||+++...+ ++.. -....+.||+|+.-|.. |...+-+++ ++
T Consensus 83 ~ydVQliGgl~L------~~G~IaEm~TGEGKTL~a~lp~-~l~a--l~g~~VhIvT~ndyLA~RD~e~m~~l~~~l-Gl 152 (908)
T PRK13107 83 HFDVQLLGGMVL------DSNRIAEMRTGEGKTLTATLPA-YLNA--LTGKGVHVITVNDYLARRDAENNRPLFEFL-GL 152 (908)
T ss_pred cCchHHhcchHh------cCCccccccCCCCchHHHHHHH-HHHH--hcCCCEEEEeCCHHHHHHHHHHHHHHHHhc-CC
Confidence 344566554322 4567888999999999764333 2222 22345889999966644 888888886 66
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHH-----HHH----hhhhhccCceEEEecCcccccCchhHHHHHHHh
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMC-----IRE----RGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE 327 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l-----~~~----~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~ 327 (429)
.+.+..+....... . ..-..||+..|-..+ +.. ........+.++||||+..+...
T Consensus 153 sv~~i~~~~~~~~r---~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD---------- 217 (908)
T PRK13107 153 TVGINVAGLGQQEK---K--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID---------- 217 (908)
T ss_pred eEEEecCCCCHHHH---H--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc----------
Confidence 77666665433211 1 112468888886555 222 11122346789999999887442
Q ss_pred ccCCcEEEEeCCccCCCHHHHHHHHh
Q psy10683 328 FKTTNRLLLTGTPLQNNLHELWALLN 353 (429)
Q Consensus 328 l~~~~r~~lTgTP~~n~~~dl~~ll~ 353 (429)
.++.-+++||.+ ... .++|..+.
T Consensus 218 -EArtPLIISg~~-~~~-~~~y~~~~ 240 (908)
T PRK13107 218 -EARTPLIISGAA-EDS-SELYIKIN 240 (908)
T ss_pred -cCCCceeecCCC-ccc-hHHHHHHH
Confidence 233447788854 333 45555444
No 161
>KOG1132|consensus
Probab=97.03 E-value=0.0068 Score=64.21 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHH-HHHhhhc-----------c------------------
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL-GYMKHYR-----------N------------------ 228 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~-~~l~~~~-----------~------------------ 228 (429)
.+.++-|+.-...++..+....+|+|-+++|+|||+..|+.. ++...+. .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 356788999999999999999999999999999998766532 2322211 0
Q ss_pred --------cCCCeEEEeccch--HHHHHHHHHhhcCCCceEE
Q psy10683 229 --------IAGPHIVIVPKST--LLNWMNEFKKWCPTLRAIC 260 (429)
Q Consensus 229 --------~~~~~LIV~P~~l--l~qW~~e~~~~~~~~~~~~ 260 (429)
..-|.++.+.... +.|-.+|+.+..-..+..+
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtV 141 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTV 141 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEE
Confidence 0135677776644 8889999988654333333
No 162
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.00 E-value=0.0054 Score=64.61 Aligned_cols=122 Identities=20% Similarity=0.139 Sum_probs=75.0
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWC 253 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~ 253 (429)
|...++-|+-|...|. .|.|.-+.+|.|||+++...+.... -..+.+-||+|+..|.. |...+-+++
T Consensus 76 g~r~ydvQlig~l~Ll------~G~VaEM~TGEGKTLvA~l~a~l~A---L~G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 76 GLRPFDVQLLGALRLL------AGDVIEMATGEGKTLAGAIAAAGYA---LQGRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCCcchHHHHHHHHHh------CCCcccccCCCCHHHHHHHHHHHHH---HcCCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 3455566887776554 3667789999999998865443322 23556788899987755 777776665
Q ss_pred CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHH-----HHH----hhhhhccCceEEEecCcccc
Q psy10683 254 PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMC-----IRE----RGVFKKFNWRYLVIDEAHRI 314 (429)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l-----~~~----~~~l~~~~~~~vIiDEaH~~ 314 (429)
++.+.+..+......+ +.. -..||+-+|-..+ +.+ ........+.++||||+..+
T Consensus 147 -GLsvg~i~~~~~~~er--r~a---Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 147 -GLTVGWITEESTPEER--RAA---YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred -CCEEEEECCCCCHHHH--HHH---HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 5666666554432211 111 1346776664333 222 12223346889999999876
No 163
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.95 E-value=0.017 Score=48.20 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=23.9
Q ss_pred HHHHHHHHhc--CCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 189 LNWMISLYEN--GINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 189 v~~l~~~~~~--~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
+..+...... +...++..++|+|||..+-.++..+.
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3333343333 44578899999999987777766553
No 164
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.92 E-value=0.0032 Score=60.60 Aligned_cols=144 Identities=20% Similarity=0.284 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHhcCCC-eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH---------------HH
Q psy10683 183 DYQVRGLNWMISLYENGIN-GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN---------------WM 246 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~~-~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q---------------W~ 246 (429)
-+|..|+..++. ...+ ..|...-|+|||+.|+|....--..++..++++|-=|..-+.+ |.
T Consensus 231 ~eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWm 307 (436)
T COG1875 231 AEQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWM 307 (436)
T ss_pred HHHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchH
Confidence 488888876653 1222 4567789999999988766443333444445444335443322 44
Q ss_pred HHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHH
Q psy10683 247 NEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR 326 (429)
Q Consensus 247 ~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~ 326 (429)
.-+-... .++....... ...+......+...|--.||=.- +.+.-.+|||||||++.- ...--.+.
T Consensus 308 q~i~DnL---E~L~~~~~~~--~~~l~~~l~~~~iev~alt~IRG-------RSl~~~FiIIDEaQNLTp--heikTilt 373 (436)
T COG1875 308 QAIFDNL---EVLFSPNEPG--DRALEEILSRGRIEVEALTYIRG-------RSLPDSFIIIDEAQNLTP--HELKTILT 373 (436)
T ss_pred HHHHhHH---HHHhcccccc--hHHHHHHHhccceeeeeeeeecc-------cccccceEEEehhhccCH--HHHHHHHH
Confidence 3332111 0000000000 01111111112222222222211 123446899999999843 44555667
Q ss_pred hccCCcEEEEeCCccCC
Q psy10683 327 EFKTTNRLLLTGTPLQN 343 (429)
Q Consensus 327 ~l~~~~r~~lTgTP~~n 343 (429)
+.-...++.|||-|.|-
T Consensus 374 R~G~GsKIVl~gd~aQi 390 (436)
T COG1875 374 RAGEGSKIVLTGDPAQI 390 (436)
T ss_pred hccCCCEEEEcCCHHHc
Confidence 77888899999988653
No 165
>KOG1802|consensus
Probab=96.89 E-value=0.011 Score=60.91 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=58.4
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccch-HHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKST-LLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~l-l~qW~~e~~~~~~~~~ 257 (429)
.+|..-|..||...+. ..=.|+..++|+|||+++.+++-.+... ..+|+||++|+++ +.|-.+.|.+- +++
T Consensus 409 pkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t--gLK 480 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT--GLK 480 (935)
T ss_pred hhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc--Cce
Confidence 3688899999987764 3346899999999999998888777663 6789999999965 67777777663 356
Q ss_pred eEEEe
Q psy10683 258 AICLI 262 (429)
Q Consensus 258 ~~~~~ 262 (429)
++-+.
T Consensus 481 VvRl~ 485 (935)
T KOG1802|consen 481 VVRLC 485 (935)
T ss_pred Eeeee
Confidence 65543
No 166
>KOG1803|consensus
Probab=96.89 E-value=0.0053 Score=62.56 Aligned_cols=65 Identities=17% Similarity=0.216 Sum_probs=47.9
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccch-HHHHHHH
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKST-LLNWMNE 248 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~l-l~qW~~e 248 (429)
...|-+-|+.|+.+... ...-.++..++|+|||.+..-++..+... .+.+||.+|+++ +.|-.+.
T Consensus 183 ~~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred CccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHc---CCeEEEEcCchHHHHHHHHH
Confidence 34788999999987764 22345778899999999998888776653 467888889855 5555553
No 167
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.81 E-value=0.013 Score=62.31 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=49.8
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccch-HHHHHHHHHh
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKST-LLNWMNEFKK 251 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~l-l~qW~~e~~~ 251 (429)
..|-+.|..||...+. .....++..++|+|||.++.+++..+... ..++|+++|++. +.+..+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 5788999999987542 33457888999999999998888776542 337899899854 5566666654
No 168
>KOG0346|consensus
Probab=96.70 E-value=0.0052 Score=60.23 Aligned_cols=149 Identities=19% Similarity=0.276 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHH-HHHHHHhhhccc----CC-CeEEEecc-chHHHHHHHHHh---hcC
Q psy10683 185 QVRGLNWMISLYENGINGILADEMGLGKTLQTI-SLLGYMKHYRNI----AG-PHIVIVPK-STLLNWMNEFKK---WCP 254 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i-~~~~~l~~~~~~----~~-~~LIV~P~-~ll~qW~~e~~~---~~~ 254 (429)
|..+|-.+++ |...+--.-+|+|||...+ -++..+...... .+ ..+|++|. .+..|-...+.+ +|+
T Consensus 46 Qs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~ 121 (569)
T KOG0346|consen 46 QSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCS 121 (569)
T ss_pred hhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHH
Confidence 5555544443 4455666889999998653 344444332221 22 34788998 566665665554 444
Q ss_pred -CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh---hhccCceEEEecCcccccCchh--HHHHHHHhc
Q psy10683 255 -TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV---FKKFNWRYLVIDEAHRIKNEKS--KLSEIVREF 328 (429)
Q Consensus 255 -~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~~s--~~~~~~~~l 328 (429)
.++++.+..+.... .....-.+..||||+|...+.+.... ...-...++|+|||.-+-+... .+.+....|
T Consensus 122 k~lr~~nl~s~~sds---v~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~L 198 (569)
T KOG0346|consen 122 KDLRAINLASSMSDS---VNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHL 198 (569)
T ss_pred HhhhhhhhhcccchH---HHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhC
Confidence 45554444222211 11122235679999999988765432 1222456899999999855433 233344444
Q ss_pred c-CCcEEEEeCCc
Q psy10683 329 K-TTNRLLLTGTP 340 (429)
Q Consensus 329 ~-~~~r~~lTgTP 340 (429)
. .-..++||||-
T Consensus 199 Pr~~Q~~LmSATl 211 (569)
T KOG0346|consen 199 PRIYQCFLMSATL 211 (569)
T ss_pred Cchhhheeehhhh
Confidence 3 23458889985
No 169
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.69 E-value=0.015 Score=61.06 Aligned_cols=139 Identities=14% Similarity=0.146 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhccc--CCCeEEEeccchHHH-HHHHHHhhcCCCceE
Q psy10683 183 DYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNI--AGPHIVIVPKSTLLN-WMNEFKKWCPTLRAI 259 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~--~~~~LIV~P~~ll~q-W~~e~~~~~~~~~~~ 259 (429)
+.|+.|+..... +.-.++.-..|+|||.++..++..+...... ...+++.+|+.--.. ..+.+......+..
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 789999876554 4567889999999999998888776543221 135777889854333 22222221111100
Q ss_pred EEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHH--------hhhhhccCceEEEecCcccccCchhHHHHHHHhccCC
Q psy10683 260 CLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRE--------RGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTT 331 (429)
Q Consensus 260 ~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~--------~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~ 331 (429)
..... . ...+-..|...+... ...-....+++||||||-++-. ....+.+..+...
T Consensus 223 ----~~~~~----~------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~--~l~~~ll~al~~~ 286 (586)
T TIGR01447 223 ----AEALI----A------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL--PLMAKLLKALPPN 286 (586)
T ss_pred ----chhhh----h------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH--HHHHHHHHhcCCC
Confidence 00000 0 000001111111100 0011123678999999999854 4566677778888
Q ss_pred cEEEEeCCccC
Q psy10683 332 NRLLLTGTPLQ 342 (429)
Q Consensus 332 ~r~~lTgTP~~ 342 (429)
.|++|.|=|-|
T Consensus 287 ~rlIlvGD~~Q 297 (586)
T TIGR01447 287 TKLILLGDKNQ 297 (586)
T ss_pred CEEEEECChhh
Confidence 99999997754
No 170
>KOG0341|consensus
Probab=96.67 E-value=0.00075 Score=64.85 Aligned_cols=149 Identities=24% Similarity=0.331 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHH----HHH--HHH-hhhcccCCCe-EEEeccchH-HHHHHHHHhh-
Q psy10683 183 DYQVRGLNWMISLYENGINGILADEMGLGKTLQTI----SLL--GYM-KHYRNIAGPH-IVIVPKSTL-LNWMNEFKKW- 252 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i----~~~--~~l-~~~~~~~~~~-LIV~P~~ll-~qW~~e~~~~- 252 (429)
|.|..|+--.+ .|+..|=-.-+|+|||++.. .++ ..+ .......+|+ |||||+--+ .|-.+-+..+
T Consensus 195 pIQvQGlPvvL----sGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~ 270 (610)
T KOG0341|consen 195 PIQVQGLPVVL----SGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYV 270 (610)
T ss_pred ceeecCcceEe----ecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHH
Confidence 45555543222 24444545569999997532 221 111 1112334554 999999544 3333323332
Q ss_pred -------cCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh----hhhhccCceEEEecCcccccC--chh
Q psy10683 253 -------CPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER----GVFKKFNWRYLVIDEAHRIKN--EKS 319 (429)
Q Consensus 253 -------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~----~~l~~~~~~~vIiDEaH~~kn--~~s 319 (429)
.|.++..+..|....+..+.. .....++|++|...+..-. -.|. --.++++|||.++-. ..-
T Consensus 271 ~~L~e~g~P~lRs~LciGG~~v~eql~~---v~~GvHivVATPGRL~DmL~KK~~sLd--~CRyL~lDEADRmiDmGFEd 345 (610)
T KOG0341|consen 271 AALQEAGYPELRSLLCIGGVPVREQLDV---VRRGVHIVVATPGRLMDMLAKKIMSLD--ACRYLTLDEADRMIDMGFED 345 (610)
T ss_pred HHHHhcCChhhhhhhhhcCccHHHHHHH---HhcCeeEEEcCcchHHHHHHHhhccHH--HHHHhhhhhHHHHhhccchh
Confidence 256777777777665543211 1135679999987665332 2222 235789999999843 223
Q ss_pred HHHHHHHhccCC-cEEEEeCCc
Q psy10683 320 KLSEIVREFKTT-NRLLLTGTP 340 (429)
Q Consensus 320 ~~~~~~~~l~~~-~r~~lTgTP 340 (429)
.+.....-+++. ..+++|||.
T Consensus 346 dir~iF~~FK~QRQTLLFSATM 367 (610)
T KOG0341|consen 346 DIRTIFSFFKGQRQTLLFSATM 367 (610)
T ss_pred hHHHHHHHHhhhhheeeeeccc
Confidence 333444445544 468899995
No 171
>KOG0949|consensus
Probab=96.66 E-value=0.023 Score=60.98 Aligned_cols=158 Identities=21% Similarity=0.191 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHH-hh-cCCCceEE
Q psy10683 184 YQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFK-KW-CPTLRAIC 260 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~-~~-~~~~~~~~ 260 (429)
+|.+-+ .....+...++..++-.|||....-++....+ ....+.++-++|. +++.|=..++. ++ ++.+...+
T Consensus 515 WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLR-esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 515 WQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLR-ESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred HHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHh-hcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 565543 44566778999999999999998887776665 4556778888898 77777655553 33 22222111
Q ss_pred -EeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh---hhc--cCceEEEecCcccccCc-hhHHHHHHHhccCCcE
Q psy10683 261 -LIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV---FKK--FNWRYLVIDEAHRIKNE-KSKLSEIVREFKTTNR 333 (429)
Q Consensus 261 -~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~---l~~--~~~~~vIiDEaH~~kn~-~s~~~~~~~~l~~~~r 333 (429)
..|.-. + .-...+-...|.||-.+.+..-... -.. -...+||+||.|.+.+. .+..+..+..+-....
T Consensus 590 sl~g~lt-q----EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~CP~ 664 (1330)
T KOG0949|consen 590 SLLGDLT-Q----EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPCPF 664 (1330)
T ss_pred hhHhhhh-H----HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCCCe
Confidence 111111 0 0001123567888888776543221 111 13579999999999774 4556777777788889
Q ss_pred EEEeCCccCCCHHHHHHHHh
Q psy10683 334 LLLTGTPLQNNLHELWALLN 353 (429)
Q Consensus 334 ~~lTgTP~~n~~~dl~~ll~ 353 (429)
++|||| .+++..++..++
T Consensus 665 L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 665 LVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred eEEecc--cCCHHHHHHHHH
Confidence 999999 466766666665
No 172
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=96.63 E-value=0.011 Score=63.24 Aligned_cols=122 Identities=18% Similarity=0.137 Sum_probs=73.3
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWC 253 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~ 253 (429)
|...++-|+-|.-.| ..|.|.-+.+|.|||+++...+..... ....+-||+|+..|.. |...+-+++
T Consensus 78 g~~~~dvQlig~l~l------~~G~iaEm~TGEGKTLvA~l~a~l~al---~G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 78 GLRPFDVQIIGGIVL------HEGNIAEMKTGEGKTLTATLPVYLNAL---TGKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCCchhHHHHHHHH------hcCCcccccCCCCCcHHHHHHHHHHHH---cCCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 345556677765433 346688899999999987544432222 2456788899987754 777766665
Q ss_pred CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHH-----HH----hhhhhccCceEEEecCcccc
Q psy10683 254 PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI-----RE----RGVFKKFNWRYLVIDEAHRI 314 (429)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~-----~~----~~~l~~~~~~~vIiDEaH~~ 314 (429)
++.+.+..+......+ +. . -..||+-+|-..+. .+ .+......+.++||||+..+
T Consensus 149 -Gl~vg~i~~~~~~~~r--~~-~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSi 212 (796)
T PRK12906 149 -GLTVGLNLNSMSPDEK--RA-A--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSI 212 (796)
T ss_pred -CCeEEEeCCCCCHHHH--HH-H--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhe
Confidence 4677666664332211 11 1 23467766644332 22 12222346788999999886
No 173
>KOG0922|consensus
Probab=96.60 E-value=0.015 Score=59.95 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=78.7
Q ss_pred HHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH-----HHHHHHhhcCCCceEEEeCChh
Q psy10683 192 MISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN-----WMNEFKKWCPTLRAICLIGDQD 266 (429)
Q Consensus 192 l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q-----W~~e~~~~~~~~~~~~~~g~~~ 266 (429)
++...++++-.|+..|+|+|||.|.=-++...-- ...+.+-+-=|.-+-.. -..|..-..+. .+.|.-.-+
T Consensus 59 il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~--~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~--~VGY~IRFe 134 (674)
T KOG0922|consen 59 ILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGF--ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE--EVGYTIRFE 134 (674)
T ss_pred HHHHHHHCCEEEEEcCCCCCccccHhHHHHhccc--ccCCcEEeecCchHHHHHHHHHHHHHhCCCcCc--eeeeEEEec
Confidence 4556677888999999999999998665532111 11122222227644322 12222211111 111110000
Q ss_pred hHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhc-cCceEEEecCcccccCchhHHHHHHHhc---cCC-cEEEEeCCcc
Q psy10683 267 ARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKK-FNWRYLVIDEAHRIKNEKSKLSEIVREF---KTT-NRLLLTGTPL 341 (429)
Q Consensus 267 ~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~-~~~~~vIiDEaH~~kn~~s~~~~~~~~l---~~~-~r~~lTgTP~ 341 (429)
+ ....+-.|...|-.+|.++.-.-.. -.+++|||||||.=.-.+--+.-.++++ +.. +.+++|||-=
T Consensus 135 -------d-~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATld 206 (674)
T KOG0922|consen 135 -------D-STSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLD 206 (674)
T ss_pred -------c-cCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence 0 0012334888888888887532111 2578999999998322222223333333 333 5688999987
Q ss_pred CCCHHHHHHH
Q psy10683 342 QNNLHELWAL 351 (429)
Q Consensus 342 ~n~~~dl~~l 351 (429)
...++++|+-
T Consensus 207 a~kfS~yF~~ 216 (674)
T KOG0922|consen 207 AEKFSEYFNN 216 (674)
T ss_pred HHHHHHHhcC
Confidence 6666666654
No 174
>KOG0337|consensus
Probab=96.60 E-value=0.0048 Score=60.17 Aligned_cols=132 Identities=20% Similarity=0.263 Sum_probs=80.5
Q ss_pred ecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEeccch-HHH---HHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCC
Q psy10683 205 ADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPKST-LLN---WMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPG 279 (429)
Q Consensus 205 ad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~~l-l~q---W~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 279 (429)
..-+|+|||..- |-.++.+.......-+.||+.|+.- ..| ...++.+++ +++..+.+|....... +.. ...
T Consensus 64 martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeq-f~~--l~~ 139 (529)
T KOG0337|consen 64 MARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQ-FIL--LNE 139 (529)
T ss_pred eeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHH-HHH--hcc
Confidence 456899999754 3345555554444557899999944 444 334444443 4555544443332222 111 124
Q ss_pred CccEEEcchHHHHHHhhh--hhccCceEEEecCcccc--cCchhHHHHHHHhccC-CcEEEEeCCc
Q psy10683 280 EWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRI--KNEKSKLSEIVREFKT-TNRLLLTGTP 340 (429)
Q Consensus 280 ~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~--kn~~s~~~~~~~~l~~-~~r~~lTgTP 340 (429)
+.|||++|...+..-... +.-....+||+||+.++ ....-++.+.+.++.. .-.+++|||-
T Consensus 140 npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatl 205 (529)
T KOG0337|consen 140 NPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL 205 (529)
T ss_pred CCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC
Confidence 678999887765432211 23334568999999998 3455677888888844 4679999994
No 175
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.58 E-value=0.027 Score=60.85 Aligned_cols=134 Identities=18% Similarity=0.186 Sum_probs=79.7
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~ 257 (429)
+..|.+-|++|+..+. .+.-.++....|+|||.++-+++..+... +...++++++|..--.....+... ..
T Consensus 321 ~~~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l~~i~~~~~~~-~~~~~v~l~ApTg~AA~~L~e~~g----~~ 391 (720)
T TIGR01448 321 RKGLSEEQKQALDTAI----QHKVVILTGGPGTGKTTITRAIIELAEEL-GGLLPVGLAAPTGRAAKRLGEVTG----LT 391 (720)
T ss_pred CCCCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCceEEEEeCchHHHHHHHHhcC----Cc
Confidence 4578999999998664 34467889999999998887777665442 212467777888766554443211 00
Q ss_pred eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEe
Q psy10683 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLT 337 (429)
Q Consensus 258 ~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lT 337 (429)
......++.. . ... . .... .-.....++||||||+++.. ......+..+....++++-
T Consensus 392 -------a~Tih~lL~~-~-~~~---~------~~~~--~~~~~~~~llIvDEaSMvd~--~~~~~Ll~~~~~~~rlilv 449 (720)
T TIGR01448 392 -------ASTIHRLLGY-G-PDT---F------RHNH--LEDPIDCDLLIVDESSMMDT--WLALSLLAALPDHARLLLV 449 (720)
T ss_pred -------cccHHHHhhc-c-CCc---c------chhh--hhccccCCEEEEeccccCCH--HHHHHHHHhCCCCCEEEEE
Confidence 0000011100 0 000 0 0000 00123568999999999854 3456666777778899998
Q ss_pred CCccC
Q psy10683 338 GTPLQ 342 (429)
Q Consensus 338 gTP~~ 342 (429)
|=|-|
T Consensus 450 GD~~Q 454 (720)
T TIGR01448 450 GDTDQ 454 (720)
T ss_pred Ccccc
Confidence 86654
No 176
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.41 E-value=0.046 Score=59.91 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHhc----CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCe------------------------
Q psy10683 182 RDYQVRGLNWMISLYEN----GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPH------------------------ 233 (429)
Q Consensus 182 r~~Q~~~v~~l~~~~~~----~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~------------------------ 233 (429)
+-+|-.|++.+...-++ |.-|+.-..+|+|||+.-.-++..+......++=+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 46899999887664433 22366678899999998887777666533222111
Q ss_pred ---EEEeccchHHH----HHHHHHh-----------hcCCC---ceEEEeCChhhHH---HHHHh--hcCCCCccEEEcc
Q psy10683 234 ---IVIVPKSTLLN----WMNEFKK-----------WCPTL---RAICLIGDQDARN---AMIRD--VMMPGEWDVCITS 287 (429)
Q Consensus 234 ---LIV~P~~ll~q----W~~e~~~-----------~~~~~---~~~~~~g~~~~~~---~~~~~--~~~~~~~dvvitt 287 (429)
-|++-.+.+.+ +.+.... ++... +.+.|.|.-.... .+..+ ....-..+|+|+|
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 24444433332 2221110 11111 1333444321110 00000 0011124588888
Q ss_pred hHHHHHHhhhh---------hccCceEEEecCcccccCchhHH-HHHHH--hccCCcEEEEeCCccCCCHHHHHH
Q psy10683 288 YEMCIRERGVF---------KKFNWRYLVIDEAHRIKNEKSKL-SEIVR--EFKTTNRLLLTGTPLQNNLHELWA 350 (429)
Q Consensus 288 y~~l~~~~~~l---------~~~~~~~vIiDEaH~~kn~~s~~-~~~~~--~l~~~~r~~lTgTP~~n~~~dl~~ 350 (429)
.+.+..-...+ ....-..|||||+|.+-...... .+.+. .....+.++||||--..-...|+.
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~~ 644 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLFR 644 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHH
Confidence 77776543222 22334679999999985433322 22222 336678899999975544444433
No 177
>KOG0336|consensus
Probab=96.40 E-value=0.012 Score=57.12 Aligned_cols=145 Identities=23% Similarity=0.376 Sum_probs=86.9
Q ss_pred cCCCeEeecCCCCCHHHHHHH--HHH---HHhhhcccCC-CeEEEeccchHH-HHHHHHHhhc-CCCceEEEeCChhhHH
Q psy10683 198 NGINGILADEMGLGKTLQTIS--LLG---YMKHYRNIAG-PHIVIVPKSTLL-NWMNEFKKWC-PTLRAICLIGDQDARN 269 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~--~~~---~l~~~~~~~~-~~LIV~P~~ll~-qW~~e~~~~~-~~~~~~~~~g~~~~~~ 269 (429)
.|..+|-...+|.|||+.-+. ++. .........+ ..|++.|..-|. |-.-|..+.- ...+.++++|... |.
T Consensus 256 QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggn-R~ 334 (629)
T KOG0336|consen 256 QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGN-RN 334 (629)
T ss_pred cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCC-ch
Confidence 466788889999999986542 111 1111112233 357778885444 4455555543 4566666666443 22
Q ss_pred HHHHhhcCCCCccEEEcchHHHHHHh--hhhhccCceEEEecCccccc--CchhHHHHHHHhccCCcEEEEeCCccCCCH
Q psy10683 270 AMIRDVMMPGEWDVCITSYEMCIRER--GVFKKFNWRYLVIDEAHRIK--NEKSKLSEIVREFKTTNRLLLTGTPLQNNL 345 (429)
Q Consensus 270 ~~~~~~~~~~~~dvvitty~~l~~~~--~~l~~~~~~~vIiDEaH~~k--n~~s~~~~~~~~l~~~~r~~lTgTP~~n~~ 345 (429)
....+.. ..++++|.|...|..-. +.+.--...++|+|||.++. ...-++.+.+..++..+-.+||.--.+..+
T Consensus 335 eqie~lk--rgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~V 412 (629)
T KOG0336|consen 335 EQIEDLK--RGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGV 412 (629)
T ss_pred hHHHHHh--cCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHH
Confidence 2233332 56889999988875432 22223346799999999984 455678888888877776666544333333
No 178
>PLN03025 replication factor C subunit; Provisional
Probab=96.39 E-value=0.12 Score=50.27 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=34.8
Q ss_pred CceEEEecCcccccCchh-HHHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCC
Q psy10683 302 NWRYLVIDEAHRIKNEKS-KLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIF 360 (429)
Q Consensus 302 ~~~~vIiDEaH~~kn~~s-~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~ 360 (429)
.+.+|||||+|.+..... .+.+.+.......++++++++...-+..|-+-...+.-.++
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 588999999999853221 12233333355567888887765555555554443333333
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.35 E-value=0.026 Score=46.54 Aligned_cols=45 Identities=20% Similarity=0.101 Sum_probs=30.7
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMN 247 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~ 247 (429)
...++.-++|+|||..+..++..+.... ..++.+.+......+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~ 47 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLD 47 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHH
Confidence 4567889999999999988876554421 35677777665555433
No 180
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.35 E-value=0.016 Score=61.04 Aligned_cols=141 Identities=14% Similarity=0.159 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcc-cCCCeEEEeccchHHHHHHH-HHhhcCCCce
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRN-IAGPHIVIVPKSTLLNWMNE-FKKWCPTLRA 258 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~-~~~~~LIV~P~~ll~qW~~e-~~~~~~~~~~ 258 (429)
.-+.|+.|+..... ..-.++.-.+|+|||.++..++..+..... ....+++++|+.--..=..| +..-...+..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 34899999975443 456789999999999998888877654322 23456677888544332222 2211111100
Q ss_pred EEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHH--------hhhhhccCceEEEecCcccccCchhHHHHHHHhccC
Q psy10683 259 ICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRE--------RGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKT 330 (429)
Q Consensus 259 ~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~--------~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~ 330 (429)
....+. ....-..|...+... .+.-....+++|||||+-++-. ......+..+..
T Consensus 229 -----~~~~~~----------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~--~lm~~ll~al~~ 291 (615)
T PRK10875 229 -----TDEQKK----------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDL--PMMARLIDALPP 291 (615)
T ss_pred -----chhhhh----------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccH--HHHHHHHHhccc
Confidence 000000 000001111111100 0111223568999999999843 556677788888
Q ss_pred CcEEEEeCCccC
Q psy10683 331 TNRLLLTGTPLQ 342 (429)
Q Consensus 331 ~~r~~lTgTP~~ 342 (429)
..|++|-|=|-|
T Consensus 292 ~~rlIlvGD~~Q 303 (615)
T PRK10875 292 HARVIFLGDRDQ 303 (615)
T ss_pred CCEEEEecchhh
Confidence 899999998754
No 181
>PRK04296 thymidine kinase; Provisional
Probab=96.31 E-value=0.027 Score=50.39 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=24.6
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEec
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P 238 (429)
.++.-+||.|||..++.++..+... ..+++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 3567889999999998888766442 446666655
No 182
>KOG0333|consensus
Probab=96.29 E-value=0.032 Score=56.07 Aligned_cols=127 Identities=24% Similarity=0.324 Sum_probs=77.4
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHH-HHHHHHHHhhh-------cccCCC-eEEEeccchH-HHHHHHHH
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQ-TISLLGYMKHY-------RNIAGP-HIVIVPKSTL-LNWMNEFK 250 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~-~i~~~~~l~~~-------~~~~~~-~LIV~P~~ll-~qW~~e~~ 250 (429)
.-|-|+.++--++ ..+..|...++|+|||.. .|-++.++... ....+| .+|++|.--| .|-.+|-.
T Consensus 268 ptpIqR~aipl~l----Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~ 343 (673)
T KOG0333|consen 268 PTPIQRQAIPLGL----QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETN 343 (673)
T ss_pred CchHHHhhccchh----ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHH
Confidence 3467777775333 356788899999999943 23333333221 122233 4777899555 45667777
Q ss_pred hhcC--CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccc
Q psy10683 251 KWCP--TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRI 314 (429)
Q Consensus 251 ~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~ 314 (429)
++.. +.+++.+.|........+ ......+|+|.|...+..... .|..-.-.+||+|||.++
T Consensus 344 kf~~~lg~r~vsvigg~s~EEq~f---qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrm 408 (673)
T KOG0333|consen 344 KFGKPLGIRTVSVIGGLSFEEQGF---QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRM 408 (673)
T ss_pred HhcccccceEEEEecccchhhhhh---hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhh
Confidence 7763 356666666554332211 112356899999887765432 233345678999999997
No 183
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.044 Score=55.66 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCC---eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 184 YQVRGLNWMISLYENGIN---GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~~~---~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.|..++..+......+.- -++..+.|+|||..+..++..+..
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 466666666666666653 378999999999999988877654
No 184
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.23 E-value=0.11 Score=55.45 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...++.|...+..++ +. ||....|+|||..+..+...+..
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6666666666666654 34 77899999999999988877654
No 185
>KOG0344|consensus
Probab=96.20 E-value=0.0054 Score=62.15 Aligned_cols=131 Identities=17% Similarity=0.207 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHH-HHHHHhhhc----ccCCCeEEEecc-chHHHHHHHHHhhc-
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS-LLGYMKHYR----NIAGPHIVIVPK-STLLNWMNEFKKWC- 253 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~-~~~~l~~~~----~~~~~~LIV~P~-~ll~qW~~e~~~~~- 253 (429)
..|-|..++-.++. +..++-+.++|.|||+.-+. ++..+.... ...-..+|+.|. .+..|-..|+.+..
T Consensus 159 Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~ 234 (593)
T KOG0344|consen 159 PTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSI 234 (593)
T ss_pred CCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCC
Confidence 34567777655543 66778889999999876544 333333322 233456888998 77788888888876
Q ss_pred -CC--CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh----hhccCceEEEecCcccccCc
Q psy10683 254 -PT--LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV----FKKFNWRYLVIDEAHRIKNE 317 (429)
Q Consensus 254 -~~--~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~----l~~~~~~~vIiDEaH~~kn~ 317 (429)
+. ..+..+........ .........+|+++.|...+...... +.-.....+|+|||.++..+
T Consensus 235 ~~~t~~~a~~~~~~~~~~q--k~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 235 DEGTSLRAAQFSKPAYPSQ--KPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP 303 (593)
T ss_pred CCCCchhhhhcccccchhh--ccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh
Confidence 22 22222222111110 00011123577888888877665433 12223446899999999877
No 186
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.18 E-value=0.029 Score=52.92 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=20.4
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
+.+|.-++|+|||..+-+++..+..
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999888776644
No 187
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.1 Score=51.91 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=72.9
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhc-ccCCCeEEEeccc----hHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhc
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYR-NIAGPHIVIVPKS----TLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVM 276 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~-~~~~~~LIV~P~~----ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 276 (429)
.++.-.+|.|||.++..++..+.... ....++.+|+-.. ...| +..|+..+.+-+
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ----L~~~a~~lgvpv---------------- 236 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ----IQTYGDIMGIPV---------------- 236 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH----HHHHhhcCCcce----------------
Confidence 45688999999999888877665422 2334556665332 2222 333332111111
Q ss_pred CCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhH---HHHHHHhcc--CCcEEEEeCCccCCCHHHHHHH
Q psy10683 277 MPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSK---LSEIVREFK--TTNRLLLTGTPLQNNLHELWAL 351 (429)
Q Consensus 277 ~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~---~~~~~~~l~--~~~r~~lTgTP~~n~~~dl~~l 351 (429)
.++-+++.+......+ ...++||||++.+....... +.+.+.... ....++|+||-=++.+.+.+.-
T Consensus 237 ------~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~ 308 (388)
T PRK12723 237 ------KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ 308 (388)
T ss_pred ------EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 1122334443333333 35789999999997543322 222333332 2456889999988888888887
Q ss_pred HhhhCC
Q psy10683 352 LNFLLP 357 (429)
Q Consensus 352 l~fl~p 357 (429)
+..+.+
T Consensus 309 ~~~~~~ 314 (388)
T PRK12723 309 FSPFSY 314 (388)
T ss_pred hcCCCC
Confidence 766544
No 188
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.012 Score=59.98 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=55.1
Q ss_pred ecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe-ccchHHHHHHHHHhhcCC----CceEEEeCChhhHHHHHHhh-cCC
Q psy10683 205 ADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV-PKSTLLNWMNEFKKWCPT----LRAICLIGDQDARNAMIRDV-MMP 278 (429)
Q Consensus 205 ad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~-P~~ll~qW~~e~~~~~~~----~~~~~~~g~~~~~~~~~~~~-~~~ 278 (429)
-+.+|+|||+++.++|.+.... .-+.+|..| -.+++..-...|-.-+.. -.++.+.+..-..++ +... ...
T Consensus 3 ~matgsgkt~~ma~lil~~y~k--gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikk-vn~fsehn 79 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKK--GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKK-VNNFSEHN 79 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHh--chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeee-ecccCccC
Confidence 4679999999999999776552 234566655 446665533332111100 011111111111000 1111 122
Q ss_pred CCccEEEcchHHHHHHhhh----------hhccCceEEEecCccccc
Q psy10683 279 GEWDVCITSYEMCIRERGV----------FKKFNWRYLVIDEAHRIK 315 (429)
Q Consensus 279 ~~~dvvitty~~l~~~~~~----------l~~~~~~~vIiDEaH~~k 315 (429)
....|+.||-+.+..+... +.... -+.+-||||++.
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~k-lvfl~deahhln 125 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQK-LVFLADEAHHLN 125 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCc-eEEEechhhhhh
Confidence 4567999999888766321 22222 234459999994
No 189
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.82 E-value=0.28 Score=51.71 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..+...+..++ +. |+..+.|+|||..+..++..+..
T Consensus 21 Qe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5555555566665554 34 77899999999999998887754
No 190
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=95.80 E-value=0.091 Score=56.77 Aligned_cols=121 Identities=20% Similarity=0.187 Sum_probs=74.0
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhcC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWCP 254 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~~ 254 (429)
...++-|+-|--.| ..|.|.-+.+|-|||+++. +.+++.. -..+.+-||+++.-|.. |...+-+|+
T Consensus 84 ~r~ydVQliGgl~L------h~G~IAEM~TGEGKTL~at-lpaylnA--L~GkgVhVVTvNdYLA~RDae~m~~vy~~L- 153 (939)
T PRK12902 84 MRHFDVQLIGGMVL------HEGQIAEMKTGEGKTLVAT-LPSYLNA--LTGKGVHVVTVNDYLARRDAEWMGQVHRFL- 153 (939)
T ss_pred CCcchhHHHhhhhh------cCCceeeecCCCChhHHHH-HHHHHHh--hcCCCeEEEeCCHHHHHhHHHHHHHHHHHh-
Confidence 34445576665433 5677888999999999754 3333322 23456778888866644 999999988
Q ss_pred CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHH-----HHHhh----hhhccCceEEEecCcccc
Q psy10683 255 TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMC-----IRERG----VFKKFNWRYLVIDEAHRI 314 (429)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l-----~~~~~----~l~~~~~~~vIiDEaH~~ 314 (429)
++.+-+..+......+ ... -..||+.+|-..+ +.+.. ......+.++||||+..+
T Consensus 154 GLtvg~i~~~~~~~er---r~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 154 GLSVGLIQQDMSPEER---KKN--YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred CCeEEEECCCCChHHH---HHh--cCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 5666665543322211 111 3457887774444 33322 223346788999999886
No 191
>KOG0950|consensus
Probab=95.77 E-value=0.059 Score=57.89 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=87.9
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH-HHHHHHhhc--CCCc
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN-WMNEFKKWC--PTLR 257 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q-W~~e~~~~~--~~~~ 257 (429)
++.+|.+++. ......+.+.|.+.+++.|||+++--++.... -...+..+.|.|-..+.| =..++..+. -++.
T Consensus 224 ~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~--l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ 299 (1008)
T KOG0950|consen 224 LFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREV--LCRRRNVLLILPYVSIVQEKISALSPFSIDLGFP 299 (1008)
T ss_pred HHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHH--HHHhhceeEecceeehhHHHHhhhhhhccccCCc
Confidence 4444444443 22233567889999999999998744432211 112345677778755554 233334433 2455
Q ss_pred eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhcc----CceEEEecCcccccCch--hHHHHHHHhc---
Q psy10683 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKF----NWRYLVIDEAHRIKNEK--SKLSEIVREF--- 328 (429)
Q Consensus 258 ~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~----~~~~vIiDEaH~~kn~~--s~~~~~~~~l--- 328 (429)
+-.|+|..... .....-++.|+|-++.....+.+... ...+||+||-|.+.... ...-.++.++
T Consensus 300 ve~y~g~~~p~-------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 300 VEEYAGRFPPE-------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred chhhcccCCCC-------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 65666543211 12234569999999887776655433 35689999999995432 2222223222
Q ss_pred -cCC--cEEEEeCCccCCC
Q psy10683 329 -KTT--NRLLLTGTPLQNN 344 (429)
Q Consensus 329 -~~~--~r~~lTgTP~~n~ 344 (429)
... ..++||+|--.|.
T Consensus 373 ~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 373 NLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred ccccceeEeeeecccCChH
Confidence 222 3699999975444
No 192
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.77 E-value=0.08 Score=52.10 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCC---eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGIN---GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~~---~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|.+++..+...+..+.. -++..+.|+|||..+..++..+..
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 66778888888877763 467999999999999999887765
No 193
>KOG1805|consensus
Probab=95.71 E-value=0.079 Score=57.07 Aligned_cols=146 Identities=15% Similarity=0.173 Sum_probs=82.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCce
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRA 258 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~ 258 (429)
.|..-|+.|+...+.. ..-.++-.=+|+|||.+...++..+... .+.+|+.+=. +.+.|-.-.+..+.-.
T Consensus 669 ~LN~dQr~A~~k~L~a---edy~LI~GMPGTGKTTtI~~LIkiL~~~---gkkVLLtsyThsAVDNILiKL~~~~i~--- 739 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAA---EDYALILGMPGTGKTTTISLLIKILVAL---GKKVLLTSYTHSAVDNILIKLKGFGIY--- 739 (1100)
T ss_pred hcCHHHHHHHHHHHhc---cchheeecCCCCCchhhHHHHHHHHHHc---CCeEEEEehhhHHHHHHHHHHhccCcc---
Confidence 5778899998765542 2234444448999999888888776552 4567777744 6677766555554311
Q ss_pred EEEeCChhhHHHHHHhhc---------------CCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHH
Q psy10683 259 ICLIGDQDARNAMIRDVM---------------MPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSE 323 (429)
Q Consensus 259 ~~~~g~~~~~~~~~~~~~---------------~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~ 323 (429)
+.-.|....-....+... ..+...||.+|---+. ...+....||++|||||-.+.-|-
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~lP~----- 812 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILLPL----- 812 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEccccccccch-----
Confidence 222232221111111111 1123345555532221 223445579999999998875543
Q ss_pred HHHhccCCcEEEEeCCcc
Q psy10683 324 IVREFKTTNRLLLTGTPL 341 (429)
Q Consensus 324 ~~~~l~~~~r~~lTgTP~ 341 (429)
.+.-+.-..+.+|-|-+.
T Consensus 813 ~LgPL~~s~kFVLVGDh~ 830 (1100)
T KOG1805|consen 813 CLGPLSFSNKFVLVGDHY 830 (1100)
T ss_pred hhhhhhhcceEEEecccc
Confidence 234455566777777543
No 194
>KOG0920|consensus
Probab=95.69 E-value=0.075 Score=57.75 Aligned_cols=147 Identities=12% Similarity=0.115 Sum_probs=81.3
Q ss_pred HHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccc--h--HHHHHHHHHhhcCCCceEEEeCChh
Q psy10683 193 ISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKS--T--LLNWMNEFKKWCPTLRAICLIGDQD 266 (429)
Q Consensus 193 ~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~--l--l~qW~~e~~~~~~~~~~~~~~g~~~ 266 (429)
++...+++-.++..++|+|||.|+-.++..-....+ +... ||| |.- . +.++...= +..+..+.+-|.-.-.
T Consensus 182 l~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~-IicTQPRRIsAIsvAeRVa~E-R~~~~g~~VGYqvrl~ 258 (924)
T KOG0920|consen 182 LDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-AACN-IICTQPRRISAISVAERVAKE-RGESLGEEVGYQVRLE 258 (924)
T ss_pred HHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCe-EEecCCchHHHHHHHHHHHHH-hccccCCeeeEEEeee
Confidence 345566788899999999999999988865544344 2222 444 652 2 33443211 1111123333321111
Q ss_pred hHHHHHHhhcCCCCccEEEcchHHHHHHhhhhh-ccCceEEEecCcccccCchhHHHHHHHhc----cCCcEEEEeCCcc
Q psy10683 267 ARNAMIRDVMMPGEWDVCITSYEMCIRERGVFK-KFNWRYLVIDEAHRIKNEKSKLSEIVREF----KTTNRLLLTGTPL 341 (429)
Q Consensus 267 ~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~-~~~~~~vIiDEaH~~kn~~s~~~~~~~~l----~~~~r~~lTgTP~ 341 (429)
.+ ....--+..+|+..+.+...... --...-||+||+|.=.-.+--+--.++.+ +.-+.++||||--
T Consensus 259 ~~--------~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~d 330 (924)
T KOG0920|consen 259 SK--------RSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLD 330 (924)
T ss_pred cc--------cCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecc
Confidence 11 00123478899988876643211 12456799999998422222233333333 4446799999987
Q ss_pred CCCHHHHHH
Q psy10683 342 QNNLHELWA 350 (429)
Q Consensus 342 ~n~~~dl~~ 350 (429)
...++++|.
T Consensus 331 ae~fs~YF~ 339 (924)
T KOG0920|consen 331 AELFSDYFG 339 (924)
T ss_pred hHHHHHHhC
Confidence 555566555
No 195
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=95.68 E-value=0.042 Score=58.54 Aligned_cols=126 Identities=18% Similarity=0.266 Sum_probs=74.5
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe-ccchHHHHHHHHHhhc-CCCceEEEeCChhhHHHHHHhhcCCCC
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV-PKSTLLNWMNEFKKWC-PTLRAICLIGDQDARNAMIRDVMMPGE 280 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~-P~~ll~qW~~e~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~ 280 (429)
++-.+||+|||...+-.+.... ......+|+|. -.+++.+-...|+... +++. .|....+. ......
T Consensus 53 vVRSpMGTGKTtaLi~wLk~~l--~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv--~Y~d~~~~-------~i~~~~ 121 (824)
T PF02399_consen 53 VVRSPMGTGKTTALIRWLKDAL--KNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFV--NYLDSDDY-------IIDGRP 121 (824)
T ss_pred EEECCCCCCcHHHHHHHHHHhc--cCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcce--eeeccccc-------cccccc
Confidence 6678999999987766554331 13455677774 5588887777776542 2222 22222111 011124
Q ss_pred ccEEEcchHHHHHHhhhhhccCceEEEecCcccccC----ch----hHHHHHHHhc--cCCcEEEEeCCc
Q psy10683 281 WDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKN----EK----SKLSEIVREF--KTTNRLLLTGTP 340 (429)
Q Consensus 281 ~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn----~~----s~~~~~~~~l--~~~~r~~lTgTP 340 (429)
++.+++..+.+.+....+. .+||+|||||+-.+-+ +. ......+..+ .+++.+++-||-
T Consensus 122 ~~rLivqIdSL~R~~~~~l-~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 122 YDRLIVQIDSLHRLDGSLL-DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred cCeEEEEehhhhhcccccc-cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 6788999998877654422 2489999999865422 11 1122223333 678888888875
No 196
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.055 Score=58.66 Aligned_cols=144 Identities=13% Similarity=0.133 Sum_probs=74.6
Q ss_pred HHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHH-----HHHHHHhhcCCCceEEEeCC
Q psy10683 192 MISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLN-----WMNEFKKWCPTLRAICLIGD 264 (429)
Q Consensus 192 l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~q-----W~~e~~~~~~~~~~~~~~g~ 264 (429)
+.....++.-.|+..++|+|||.|.=.++... +..+...|+| |.-+-.- -.+|+..-.+...-+.....
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~----g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe 133 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEE----GLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFE 133 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhh----hcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEee
Confidence 34556677889999999999999875555322 1122333444 7754322 22222222221111111111
Q ss_pred hhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh-hhccCceEEEecCcccccCchhHH-HHHHHh----ccC-CcEEEEe
Q psy10683 265 QDARNAMIRDVMMPGEWDVCITSYEMCIRERGV-FKKFNWRYLVIDEAHRIKNEKSKL-SEIVRE----FKT-TNRLLLT 337 (429)
Q Consensus 265 ~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~-l~~~~~~~vIiDEaH~~kn~~s~~-~~~~~~----l~~-~~r~~lT 337 (429)
.. ...+-.+=++|-.+|.+.... -.--.+++||+||+|.= +-++.+ .-.++. .+. -+.++||
T Consensus 134 ~~----------~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHER-Sl~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 134 SK----------VSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHER-SLNTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred cc----------CCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhh-hHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 11 012234677888888776432 11235779999999982 222221 112222 232 3458899
Q ss_pred CCccCCCHHHHHH
Q psy10683 338 GTPLQNNLHELWA 350 (429)
Q Consensus 338 gTP~~n~~~dl~~ 350 (429)
||-=...++.+++
T Consensus 203 ATld~~rfs~~f~ 215 (845)
T COG1643 203 ATLDAERFSAYFG 215 (845)
T ss_pred cccCHHHHHHHcC
Confidence 9985555555544
No 197
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.32 Score=51.36 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...++.+...+.+++ ++ |+..+.|.|||..|..++..+..
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5555666666666554 34 78999999999999888877653
No 198
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.60 E-value=0.12 Score=46.43 Aligned_cols=134 Identities=18% Similarity=0.243 Sum_probs=73.3
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCcc
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWD 282 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d 282 (429)
++.-++|.|||.++.-++.++... ..++.+||-..-..-=.++++.+..-+.+-++.......
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~-------------- 67 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD-------------- 67 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC--------------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh--------------
Confidence 568899999999998888877653 556777775544333344455544333333332211100
Q ss_pred EEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHH---HHHHHhc-cCCcEEEEeCCccCCCHHHHHHHHhhhCC
Q psy10683 283 VCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKL---SEIVREF-KTTNRLLLTGTPLQNNLHELWALLNFLLP 357 (429)
Q Consensus 283 vvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~---~~~~~~l-~~~~r~~lTgTP~~n~~~dl~~ll~fl~p 357 (429)
.-+.+......+..-+.++|+||-+.+..+..... .+.+..+ .....+++++|--+..+.........+.+
T Consensus 68 ----~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~ 142 (196)
T PF00448_consen 68 ----PAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGI 142 (196)
T ss_dssp ----HHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSST
T ss_pred ----hHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccC
Confidence 00111122233344567899999998865433322 2222233 44566889999877766666665555544
No 199
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=95.60 E-value=0.055 Score=57.68 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHhcCC-CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceE
Q psy10683 182 RDYQVRGLNWMISLYENGI-NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAI 259 (429)
Q Consensus 182 r~~Q~~~v~~l~~~~~~~~-~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~ 259 (429)
.-.|-.++..+...+..+. .-+|..-+|+|||+++..++.. ..+|+|||+|. .+..||.++|+.|+|+-.|.
T Consensus 11 ~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~------~~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~ 84 (655)
T TIGR00631 11 AGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQ------VNRPTLVIAHNKTLAAQLYNEFKEFFPENAVE 84 (655)
T ss_pred ChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHH------hCCCEEEEECCHHHHHHHHHHHHHhCCCCeEE
Confidence 3578889988888876664 4567888999999998877643 24689999999 55678999999999875455
Q ss_pred EE
Q psy10683 260 CL 261 (429)
Q Consensus 260 ~~ 261 (429)
.+
T Consensus 85 ~f 86 (655)
T TIGR00631 85 YF 86 (655)
T ss_pred EE
Confidence 44
No 200
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.58 E-value=0.023 Score=51.83 Aligned_cols=74 Identities=27% Similarity=0.201 Sum_probs=57.4
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCP 254 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~ 254 (429)
+..+|+-|.+.+..|+.- ..+.+.++..-||-|||.+.+-+++.+... ..+=+-+|||++++.|-.+-+...+.
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAd--g~~LvrviVpk~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALAD--GSRLVRVIVPKALLEQMRQMLRSRLG 94 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcC--CCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 567999999999988763 466788999999999999888877766542 22345578899999998777765553
No 201
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=95.54 E-value=0.0068 Score=66.71 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=33.0
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
..|.|||.+.+.++... ...+.+|||+||+|||++++.++
T Consensus 151 ~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil 190 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMII 190 (956)
T ss_pred CCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHH
Confidence 57999999998775443 45678999999999999998765
No 202
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=95.49 E-value=0.08 Score=57.10 Aligned_cols=122 Identities=17% Similarity=0.154 Sum_probs=72.3
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWC 253 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~ 253 (429)
|...++-|+-|.-.| ..|.|.-+.+|-|||+++... +++.. -..+.+-||+++.-|.. |...+-+|+
T Consensus 74 G~r~ydvQlig~l~L------~~G~IaEm~TGEGKTL~a~l~-ayl~a--L~G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 74 GLRHFDVQLIGGLVL------NDGKIAEMKTGEGKTLVATLP-AYLNA--LTGKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred CCCCCchHhhhhHhh------cCCccccccCCCCchHHHHHH-HHHHH--hcCCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 344556677665333 456788899999999965433 33322 23556778888866644 999998888
Q ss_pred CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchH-----HHHHHh----hhhhccCceEEEecCcccc
Q psy10683 254 PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYE-----MCIRER----GVFKKFNWRYLVIDEAHRI 314 (429)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~-----~l~~~~----~~l~~~~~~~vIiDEaH~~ 314 (429)
+ +.+.+..+......+ ... -..||+-+|-. .|+.+. .......+.++||||+..+
T Consensus 145 G-Lsvg~i~~~~~~~er---r~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 145 G-LTVGLIQEGMSSEER---KKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred C-CceeeeCCCCChHHH---HHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 4 566555443322111 111 23467766643 333221 1223346789999999886
No 203
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.47 E-value=0.13 Score=55.81 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..+...+..++ +. |+..+.|+|||..+..++..+..
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 4555555555555543 45 78999999999999988877654
No 204
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.43 E-value=0.14 Score=54.80 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=61.2
Q ss_pred CCCChHHHHHHHHHHHHHHhcCC-CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGI-NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT 255 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~-~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~ 255 (429)
...+..+|..++.-+...+..+. ..++..-.|+|||+.+.+++.. ..+++|||+|. ....+|.+++..|+|+
T Consensus 10 ~~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~------~~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 10 PYKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIAR------LQRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CCCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHH------hCCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 35788999999999888876553 4577888999999987765532 24689999999 5667899999999987
Q ss_pred CceEEE
Q psy10683 256 LRAICL 261 (429)
Q Consensus 256 ~~~~~~ 261 (429)
..+..+
T Consensus 84 ~~v~~f 89 (652)
T PRK05298 84 NAVEYF 89 (652)
T ss_pred CeEEEe
Confidence 655555
No 205
>KOG0326|consensus
Probab=95.40 E-value=0.016 Score=54.74 Aligned_cols=132 Identities=19% Similarity=0.230 Sum_probs=80.0
Q ss_pred Eee-cCCCCCHHHHHH-HHHHHHhhhcccCCCeEEEeccch----HHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhc
Q psy10683 203 ILA-DEMGLGKTLQTI-SLLGYMKHYRNIAGPHIVIVPKST----LLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVM 276 (429)
Q Consensus 203 ila-d~~GlGKT~~~i-~~~~~l~~~~~~~~~~LIV~P~~l----l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 276 (429)
||| .-.|+|||-.-+ -.+..+.. ....=..+|++|.-- .+|-..++.+++. +.+++..|....+..+.+-
T Consensus 125 iLaRaKNGTGKT~a~~IP~Lekid~-~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~-i~vmvttGGT~lrDDI~Rl-- 200 (459)
T KOG0326|consen 125 ILARAKNGTGKTAAYCIPVLEKIDP-KKNVIQAIILVPTRELALQTSQVCKELSKHLG-IKVMVTTGGTSLRDDIMRL-- 200 (459)
T ss_pred hhhhccCCCCCccceechhhhhcCc-cccceeEEEEeecchhhHHHHHHHHHHhcccC-eEEEEecCCcccccceeee--
Confidence 443 568999996432 22222211 222234588899733 3667788888884 8888888877766543321
Q ss_pred CCCCccEEEcchHHHHHHhhhh--hccCceEEEecCcccccCchhH--HHHHHHhc-cCCcEEEEeCC
Q psy10683 277 MPGEWDVCITSYEMCIRERGVF--KKFNWRYLVIDEAHRIKNEKSK--LSEIVREF-KTTNRLLLTGT 339 (429)
Q Consensus 277 ~~~~~dvvitty~~l~~~~~~l--~~~~~~~vIiDEaH~~kn~~s~--~~~~~~~l-~~~~r~~lTgT 339 (429)
....+++|.|...+..-...- .--+-..+|+|||..+-+..-+ ..+.+.-| +.+..++.|||
T Consensus 201 -~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySAT 267 (459)
T KOG0326|consen 201 -NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSAT 267 (459)
T ss_pred -cCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecc
Confidence 234678999988765543321 1113457899999998664433 34455555 44455777888
No 206
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.21 E-value=1.1 Score=42.70 Aligned_cols=163 Identities=13% Similarity=0.127 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHhcCC-----CeEeecCCCCCHHHHHHHHHHHHhhhcc---cCCCeEEE-ecc-chHHHHHHHHHhh
Q psy10683 183 DYQVRGLNWMISLYENGI-----NGILADEMGLGKTLQTISLLGYMKHYRN---IAGPHIVI-VPK-STLLNWMNEFKKW 252 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~-----~~ilad~~GlGKT~~~i~~~~~l~~~~~---~~~~~LIV-~P~-~ll~qW~~e~~~~ 252 (429)
|.=.+++..|...+.... +-++..++|.|||..+=.|......... ...|+|+| +|. .-.......|-..
T Consensus 40 ~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 40 PRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 445567777776665443 4577899999999877655542211111 11244444 344 2222233332221
Q ss_pred cCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccc-cCchhHHHH---HHHhc
Q psy10683 253 CPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRI-KNEKSKLSE---IVREF 328 (429)
Q Consensus 253 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~-kn~~s~~~~---~~~~l 328 (429)
+.- -+.... .....-......+...+..++||||.|++ .+...++.. +++.|
T Consensus 120 lga-----P~~~~~-------------------~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L 175 (302)
T PF05621_consen 120 LGA-----PYRPRD-------------------RVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFL 175 (302)
T ss_pred hCc-----ccCCCC-------------------CHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHH
Confidence 100 000000 00111112235677788999999999996 443344333 34444
Q ss_pred cCC--cEEEEeCCccC----CCHHHHHHHHhhhCCCCCCChHHHHhh
Q psy10683 329 KTT--NRLLLTGTPLQ----NNLHELWALLNFLLPDIFSSSDDFDSW 369 (429)
Q Consensus 329 ~~~--~r~~lTgTP~~----n~~~dl~~ll~fl~p~~~~~~~~f~~~ 369 (429)
... --+++.||+-- ++-..|-+=+.-+.-+.|...++|.+.
T Consensus 176 ~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~L 222 (302)
T PF05621_consen 176 GNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRL 222 (302)
T ss_pred hhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHH
Confidence 333 33677898821 111233333333333455555555554
No 207
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.18 E-value=0.64 Score=48.19 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..+...+..+. +. ++..+.|+|||..+..++..+..
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5666666666665553 34 67899999999999888877654
No 208
>KOG0924|consensus
Probab=95.18 E-value=0.11 Score=53.96 Aligned_cols=145 Identities=15% Similarity=0.171 Sum_probs=70.6
Q ss_pred HHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHH-----HHHHHHHhhcCCCceEEEeCC
Q psy10683 192 MISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLL-----NWMNEFKKWCPTLRAICLIGD 264 (429)
Q Consensus 192 l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~-----qW~~e~~~~~~~~~~~~~~g~ 264 (429)
|+.....+.-.|+..|+|+|||.|.-.++ .. .+....-+|.| |.-+-. .-.+|+.--.++ .+-|.-
T Consensus 364 ll~~ir~n~vvvivgETGSGKTTQl~QyL---~e-dGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~--~VGYsI- 436 (1042)
T KOG0924|consen 364 LLSVIRENQVVVIVGETGSGKTTQLAQYL---YE-DGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD--TVGYSI- 436 (1042)
T ss_pred HHHHHhhCcEEEEEecCCCCchhhhHHHH---Hh-cccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc--ccceEE-
Confidence 45555667778899999999999875444 33 33333446666 543221 122233211111 001100
Q ss_pred hhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhh-hccCceEEEecCcccccCchhHHHHHHHhccCCc----EEEEeCC
Q psy10683 265 QDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF-KKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTN----RLLLTGT 339 (429)
Q Consensus 265 ~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l-~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~----r~~lTgT 339 (429)
| +.+.. ...--|-.+|-..|.++.-.- .-..+.+||+||||.=.-..-.+.-.++...+++ .++.|||
T Consensus 437 ---R---FEdvT-~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSAT 509 (1042)
T KOG0924|consen 437 ---R---FEDVT-SEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSAT 509 (1042)
T ss_pred ---E---eeecC-CCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecc
Confidence 0 00000 011123345555554442111 1124679999999984322233334444443333 4778888
Q ss_pred ccCCCHHHHHH
Q psy10683 340 PLQNNLHELWA 350 (429)
Q Consensus 340 P~~n~~~dl~~ 350 (429)
---..+.++|+
T Consensus 510 m~a~kf~nfFg 520 (1042)
T KOG0924|consen 510 MDAQKFSNFFG 520 (1042)
T ss_pred ccHHHHHHHhC
Confidence 75555555554
No 209
>KOG0989|consensus
Probab=95.09 E-value=0.12 Score=48.81 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcCC--CeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 184 YQVRGLNWMISLYENGI--NGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~~--~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
+|...|.-+......+. +-++..+.|+|||-++.++...+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 68888887777665522 3477899999999999999987654
No 210
>PF13245 AAA_19: Part of AAA domain
Probab=95.08 E-value=0.1 Score=39.16 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=32.7
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhh-cccCCCeEEEeccchHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHY-RNIAGPHIVIVPKSTLLN 244 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~-~~~~~~~LIV~P~~ll~q 244 (429)
-.++...+|+|||.+++..+..+... ....+++||++|.....+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 35568999999999998888887742 222678999999955443
No 211
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.06 E-value=0.14 Score=49.87 Aligned_cols=41 Identities=15% Similarity=0.056 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCC--CeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..+......+. ..++..+.|+|||..+.+++..+..
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3445555556555555 5688999999999999988876653
No 212
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.02 E-value=0.25 Score=45.11 Aligned_cols=26 Identities=19% Similarity=-0.013 Sum_probs=20.4
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
...+|.-+.|+|||..+.++......
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34677899999999999887765543
No 213
>PRK08181 transposase; Validated
Probab=95.01 E-value=0.34 Score=45.77 Aligned_cols=45 Identities=20% Similarity=0.070 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
+...|..++..+..+...+.+.+|..++|+|||-.+.++...+..
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 456777777666555567778899999999999999888876654
No 214
>CHL00181 cbbX CbbX; Provisional
Probab=94.92 E-value=0.12 Score=49.45 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.0
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.+|.-++|+|||..|-+++..+..
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 578899999999999888776544
No 215
>KOG0332|consensus
Probab=94.91 E-value=0.33 Score=47.06 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=82.1
Q ss_pred CCChHHHHHHHHHHHHH--------------HhcCCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEecc-chH
Q psy10683 179 GEMRDYQVRGLNWMISL--------------YENGINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPK-STL 242 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~--------------~~~~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~-~ll 242 (429)
..|+|.=+.|+..|-.. ....++-|-....|+|||... ++.++.... ....--.+.++|. .+.
T Consensus 95 L~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~-~~~~PQ~iCLaPtrELA 173 (477)
T KOG0332|consen 95 LRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP-DVVVPQCICLAPTRELA 173 (477)
T ss_pred hCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc-cccCCCceeeCchHHHH
Confidence 46777766777655211 112334555678999999643 222322211 1112223566898 444
Q ss_pred HHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhcc---CceEEEecCcccccCch-
Q psy10683 243 LNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKF---NWRYLVIDEAHRIKNEK- 318 (429)
Q Consensus 243 ~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~---~~~~vIiDEaH~~kn~~- 318 (429)
.|-.+-+.+......+-..+.-.+.+. .+- ..-.-.|+|-|-.++..-...++.+ .....++|||..+-+..
T Consensus 174 ~Q~~eVv~eMGKf~~ita~yair~sk~---~rG-~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG 249 (477)
T KOG0332|consen 174 PQTGEVVEEMGKFTELTASYAIRGSKA---KRG-NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQG 249 (477)
T ss_pred HHHHHHHHHhcCceeeeEEEEecCccc---ccC-CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhccc
Confidence 454433443322212222222111110 000 0012358999988887665554444 45789999999985533
Q ss_pred --hHHHHHHHhcc-CCcEEEEeCCc
Q psy10683 319 --SKLSEIVREFK-TTNRLLLTGTP 340 (429)
Q Consensus 319 --s~~~~~~~~l~-~~~r~~lTgTP 340 (429)
-...+..+.+. ....++.|+|-
T Consensus 250 ~~D~S~rI~~~lP~~~QllLFSATf 274 (477)
T KOG0332|consen 250 FQDQSIRIMRSLPRNQQLLLFSATF 274 (477)
T ss_pred ccccchhhhhhcCCcceEEeeechh
Confidence 22344455554 66778899995
No 216
>KOG0329|consensus
Probab=94.89 E-value=0.091 Score=48.17 Aligned_cols=134 Identities=15% Similarity=0.293 Sum_probs=79.0
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCC--CeEEEecc-chHHHHHHH---HHhhcCCCceEEEeCChhhHHH--
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAG--PHIVIVPK-STLLNWMNE---FKKWCPTLRAICLIGDQDARNA-- 270 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~--~~LIV~P~-~ll~qW~~e---~~~~~~~~~~~~~~g~~~~~~~-- 270 (429)
|-..+...-.|+|||... .++.+.......+ .+||+|-. .+-.|-.+| |.++.|+.++.+++|.......
T Consensus 79 gmdvlcqaksgmgktavf--vl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee 156 (387)
T KOG0329|consen 79 GMDVLCQAKSGMGKTAVF--VLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEE 156 (387)
T ss_pred cchhheecccCCCceeee--ehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHH
Confidence 344567788999999643 2333333333333 35777866 555666666 4566799999999997644321
Q ss_pred HHHhhcCCCCccEEEcchHHHHHHh--hhhhccCceEEEecCcccccCchhHHHHHHHhc-----cCCcEEEEeCCc
Q psy10683 271 MIRDVMMPGEWDVCITSYEMCIRER--GVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-----KTTNRLLLTGTP 340 (429)
Q Consensus 271 ~~~~~~~~~~~dvvitty~~l~~~~--~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-----~~~~r~~lTgTP 340 (429)
.+. ...+||+.|...+..-. ..+.--+..-.|+|||..+-. .-...+-+..+ ..+..+.+|+|-
T Consensus 157 ~lk-----~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle-~lDMrRDvQEifr~tp~~KQvmmfsatl 227 (387)
T KOG0329|consen 157 LLK-----NCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE-QLDMRRDVQEIFRMTPHEKQVMMFSATL 227 (387)
T ss_pred HHh-----CCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH-HHHHHHHHHHHhhcCcccceeeeeeeec
Confidence 121 26689999987764332 222223445689999998643 12233333333 334457788885
No 217
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=94.88 E-value=0.1 Score=55.96 Aligned_cols=71 Identities=17% Similarity=0.069 Sum_probs=52.2
Q ss_pred ccCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc-hHHHHHHH
Q psy10683 176 IKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS-TLLNWMNE 248 (429)
Q Consensus 176 ~~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~-ll~qW~~e 248 (429)
+++...|+.|.+.+..+.....++..+++-.++|+|||+..++.+....... ..+++|.++.. +..|-.++
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~--~~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE--GKKVIISTRTKALQEQLLEE 82 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc--CCcEEEECCCHHHHHHHHHh
Confidence 3467899999999999998888888899999999999999887765554322 24555555664 44443443
No 218
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.81 E-value=0.11 Score=49.56 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=20.6
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
+.++..++|+|||..|.++...+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4577899999999999888777655
No 219
>KOG0327|consensus
Probab=94.79 E-value=0.047 Score=52.84 Aligned_cols=152 Identities=17% Similarity=0.225 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHH-hhcCC--CceE
Q psy10683 183 DYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFK-KWCPT--LRAI 259 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~-~~~~~--~~~~ 259 (429)
.-|.+||--++ +|.+.+.....|+|||.+-...+...........-.||++|...+.+-..+.. .+... ..+.
T Consensus 51 aIQqraI~p~i----~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~ 126 (397)
T KOG0327|consen 51 AIQQRAILPCI----KGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVH 126 (397)
T ss_pred HHHhccccccc----cCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeee
Confidence 34666653322 36778888899999999844433333222333445688999988877554433 33333 3444
Q ss_pred EEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHH--hhhhhccCceEEEecCccccc--CchhHHHHHHHhccC-CcEE
Q psy10683 260 CLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRE--RGVFKKFNWRYLVIDEAHRIK--NEKSKLSEIVREFKT-TNRL 334 (429)
Q Consensus 260 ~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~--~~~l~~~~~~~vIiDEaH~~k--n~~s~~~~~~~~l~~-~~r~ 334 (429)
...|....+.. ..........|++-|...+..- ...+......+.++|||..+. +..-++......+.. ...+
T Consensus 127 ~~igg~~~~~~--~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~ 204 (397)
T KOG0327|consen 127 ACIGGTNVRRE--DQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVV 204 (397)
T ss_pred eecCcccchhh--hhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhhe
Confidence 44443332211 0111123356777776444322 225556667899999999874 455567777777744 4568
Q ss_pred EEeCCc
Q psy10683 335 LLTGTP 340 (429)
Q Consensus 335 ~lTgTP 340 (429)
++|||-
T Consensus 205 l~SAT~ 210 (397)
T KOG0327|consen 205 LLSATM 210 (397)
T ss_pred eecccC
Confidence 889995
No 220
>KOG0991|consensus
Probab=94.79 E-value=0.069 Score=48.55 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=52.3
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCC
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPG 279 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 279 (429)
.+-|++.++|.|||..+.+++..+.-... ++-+-. +. .....
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~-----------------ke~vLE---------LN------------ASdeR 90 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSY-----------------KEAVLE---------LN------------ASDER 90 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhh-----------------hhHhhh---------cc------------Ccccc
Confidence 35789999999999999888876544111 000000 00 01112
Q ss_pred CccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHH
Q psy10683 280 EWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSE 323 (429)
Q Consensus 280 ~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~ 323 (429)
..|||=....+|....-.+....+..||+|||..+.....+..+
T Consensus 91 GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlR 134 (333)
T KOG0991|consen 91 GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALR 134 (333)
T ss_pred ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHH
Confidence 34555555555655566677778899999999998654444333
No 221
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.78 E-value=0.24 Score=51.96 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..|...+..+. +. |+..+.|+|||..+..++..+..
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6667777777666654 34 67899999999999999877764
No 222
>KOG0925|consensus
Probab=94.76 E-value=0.045 Score=54.59 Aligned_cols=142 Identities=17% Similarity=0.132 Sum_probs=67.7
Q ss_pred HHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchH-HH----HHHHHHhhcCCC-ceEEEeCCh
Q psy10683 194 SLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTL-LN----WMNEFKKWCPTL-RAICLIGDQ 265 (429)
Q Consensus 194 ~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll-~q----W~~e~~~~~~~~-~~~~~~g~~ 265 (429)
..+.+++..++..|+|+|||.|.=.++....... ...|.| |.-+- .+ -.+|+.-..+.- ...+-..+-
T Consensus 57 ~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~----~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC 132 (699)
T KOG0925|consen 57 KLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH----LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDC 132 (699)
T ss_pred HHHhcCceEEEEecCCCCccccCcHHHHHHHHhh----ccceeecCchHHHHHHHHHHHHHHhccccchhcccccccccc
Confidence 4456677889999999999998766654433311 256777 33211 11 112221111000 000000000
Q ss_pred hhHHHHHHhhcCCCCccEEEcchHHHHHHhhh-hhccCceEEEecCcccccCchhHHHHHHHhc----cCCcEEEEeCCc
Q psy10683 266 DARNAMIRDVMMPGEWDVCITSYEMCIRERGV-FKKFNWRYLVIDEAHRIKNEKSKLSEIVREF----KTTNRLLLTGTP 340 (429)
Q Consensus 266 ~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~-l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l----~~~~r~~lTgTP 340 (429)
...+.+ .-.+|-.++.++.-. -.-..|.+||+||||.=.-.+-.+.-.++.. ..-+.+++|+|-
T Consensus 133 ~~~~T~-----------Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmSatl 201 (699)
T KOG0925|consen 133 TSPNTL-----------LKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMSATL 201 (699)
T ss_pred CChhHH-----------HHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEeeccc
Confidence 000000 012333444444321 1123689999999998321111122222222 334568899998
Q ss_pred cCCCHHHHHH
Q psy10683 341 LQNNLHELWA 350 (429)
Q Consensus 341 ~~n~~~dl~~ 350 (429)
....+..+|+
T Consensus 202 ~a~Kfq~yf~ 211 (699)
T KOG0925|consen 202 DAEKFQRYFG 211 (699)
T ss_pred chHHHHHHhC
Confidence 7777776665
No 223
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.73 E-value=0.37 Score=51.07 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..+...+..+. +. |+..+.|+|||..+..++..+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 5566666666666554 33 78899999999999988877655
No 224
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.68 E-value=0.62 Score=46.32 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=68.6
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc----chHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcC
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK----STLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMM 277 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~----~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (429)
..+.-..|.|||..+..++..+.. ....+.+|.-. ..+.||..-.... ++.+..
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~---~GkkVglI~aDt~RiaAvEQLk~yae~l--gipv~v----------------- 301 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTI--GFEVIA----------------- 301 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEEecCCcchHHHHHHHHHhhhc--CCcEEe-----------------
Confidence 356888999999998888776643 23355555432 2455665322211 111111
Q ss_pred CCCccEEEcchHHHHHHhhhhhc-cCceEEEecCcccccCchhHHHHHHHhc---cC-CcEEEEeCCccCCCHHHHHHHH
Q psy10683 278 PGEWDVCITSYEMCIRERGVFKK-FNWRYLVIDEAHRIKNEKSKLSEIVREF---KT-TNRLLLTGTPLQNNLHELWALL 352 (429)
Q Consensus 278 ~~~~dvvitty~~l~~~~~~l~~-~~~~~vIiDEaH~~kn~~s~~~~~~~~l---~~-~~r~~lTgTP~~n~~~dl~~ll 352 (429)
..+...+......+.. .++++||||-+-+..+....+......+ .. ...++|++|--.+.+.+....+
T Consensus 302 -------~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 302 -------VRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred -------cCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 1223333333333332 2578999999988654333333332222 22 2345677887666767766666
Q ss_pred hhhCC
Q psy10683 353 NFLLP 357 (429)
Q Consensus 353 ~fl~p 357 (429)
+-+..
T Consensus 375 ~~~~i 379 (436)
T PRK11889 375 KDIHI 379 (436)
T ss_pred cCCCC
Confidence 65433
No 225
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.67 E-value=0.18 Score=55.07 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..|...+.+++ +. ||.-..|+|||..+..++..+..
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4445555555555543 34 67899999999999999887764
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.66 E-value=0.84 Score=44.49 Aligned_cols=47 Identities=19% Similarity=0.118 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHHHHHHHh----cCCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 179 GEMRDYQVRGLNWMISLYE----NGINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~----~~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
+..+.++..++..+..... .+.+.+|..++|+|||..+.+++..+..
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3556666677765544333 3456678899999999999998887765
No 227
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.57 E-value=0.64 Score=43.64 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhcCCC-eEeecCCCCCHHHHHHHHHHHH
Q psy10683 183 DYQVRGLNWMISLYENGIN-GILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~~-~ilad~~GlGKT~~~i~~~~~l 223 (429)
+.+..++..+......+.+ .++.-+.|+|||..+-.++..+
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 4556677776665555543 6789999999998887776544
No 228
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.56 E-value=0.55 Score=47.50 Aligned_cols=128 Identities=15% Similarity=0.165 Sum_probs=67.3
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcC--CCceEEEeCChhhHHHHHHhhcCCC
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCP--TLRAICLIGDQDARNAMIRDVMMPG 279 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~ 279 (429)
.++.-..|.|||.++..++..+.... ...++.+|.-..--..=.+++..|.. ++.+..
T Consensus 224 i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~------------------- 283 (424)
T PRK05703 224 VALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEV------------------- 283 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEc-------------------
Confidence 35678899999999988887765111 12345555422210000112222221 111111
Q ss_pred CccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc------cCCcEEEEeCCccCCCHHHHHHHHh
Q psy10683 280 EWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF------KTTNRLLLTGTPLQNNLHELWALLN 353 (429)
Q Consensus 280 ~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l------~~~~r~~lTgTP~~n~~~dl~~ll~ 353 (429)
..+...+......+. .+++||||.+-+....... ...+..+ .....++|++|+-.+.+.+++..++
T Consensus 284 -----~~~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~~-~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 284 -----VYDPKELAKALEQLR--DCDVILIDTAGRSQRDKRL-IEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred -----cCCHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHHH-HHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 111122222222222 4789999999775443222 2222222 2244788999998888888888887
Q ss_pred hhCC
Q psy10683 354 FLLP 357 (429)
Q Consensus 354 fl~p 357 (429)
.+.+
T Consensus 356 ~~~~ 359 (424)
T PRK05703 356 RLPL 359 (424)
T ss_pred CCCC
Confidence 7665
No 229
>KOG0951|consensus
Probab=94.50 E-value=0.16 Score=56.26 Aligned_cols=133 Identities=20% Similarity=0.264 Sum_probs=82.7
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHH-----HHHHHHHhhcCCCceEEEeCChhhHHHH
Q psy10683 197 ENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLL-----NWMNEFKKWCPTLRAICLIGDQDARNAM 271 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~-----qW~~e~~~~~~~~~~~~~~g~~~~~~~~ 271 (429)
+.+.+.+++...|+|||..+--.+. . ....+..+-|+|...+. .|...|.+- .+..++...|...-..++
T Consensus 1157 ~~nd~v~vga~~gsgkt~~ae~a~l--~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lkl 1231 (1674)
T KOG0951|consen 1157 NTNDNVLVGAPNGSGKTACAELALL--R--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLKL 1231 (1674)
T ss_pred cccceEEEecCCCCchhHHHHHHhc--C--CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchHH
Confidence 3456789999999999987743332 1 34456678889987653 488888776 456666666654433222
Q ss_pred HHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhH-------HHHHHHhccCCcEEEEeCCccCC
Q psy10683 272 IRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSK-------LSEIVREFKTTNRLLLTGTPLQN 343 (429)
Q Consensus 272 ~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~-------~~~~~~~l~~~~r~~lTgTP~~n 343 (429)
. ..-+|+|.|.+.+..-. .-..-++.|+||.|.+.....+ ...+...+....|++.-+|-+.|
T Consensus 1232 ~------~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lan 1301 (1674)
T KOG0951|consen 1232 L------QKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLAN 1301 (1674)
T ss_pred h------hhcceEEechhHHHHHh---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhcc
Confidence 2 34469999988765442 2234578999999999754322 33344555555554444444433
No 230
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.47 E-value=0.71 Score=42.71 Aligned_cols=39 Identities=10% Similarity=-0.072 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhc--CCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 186 VRGLNWMISLYEN--GINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 186 ~~~v~~l~~~~~~--~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
..++.++...... +...++..+.|+|||-.+.++...+.
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3355544443322 23468899999999988877766554
No 231
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.42 E-value=0.68 Score=40.19 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhhhc
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKHYR 227 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~~~ 227 (429)
|.+.+..+...+..+. .+ ++..+.|.||+..+..++..+....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~ 47 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSN 47 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 6677777777777664 44 6788899999999999998876643
No 232
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.36 E-value=0.41 Score=47.47 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHh
Q psy10683 184 YQVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~ 224 (429)
-|...+..+...+..+. ++ ++..+.|+|||..+-.++..+.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 36667776666666553 34 7899999999999988887664
No 233
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=94.02 E-value=0.71 Score=50.89 Aligned_cols=129 Identities=16% Similarity=0.241 Sum_probs=73.2
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH----HHHHHHHHhhcCCCceEEEeC---ChhhHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL----LNWMNEFKKWCPTLRAICLIG---DQDARNAM 271 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll----~qW~~e~~~~~~~~~~~~~~g---~~~~~~~~ 271 (429)
+.|.|.-+.+|=|||+++... .++... . .+.+=||+.+.-| ..|...+-+|+ ++.+-+... ....|+..
T Consensus 182 h~G~IAEM~TGEGKTLvAtlp-~yLnAL-~-GkgVHvVTVNDYLA~RDaewmgply~fL-GLsvg~i~~~~~~~~~rr~a 257 (1112)
T PRK12901 182 HQGKIAEMATGEGKTLVATLP-VYLNAL-T-GNGVHVVTVNDYLAKRDSEWMGPLYEFH-GLSVDCIDKHQPNSEARRKA 257 (1112)
T ss_pred cCCceeeecCCCCchhHHHHH-HHHHHH-c-CCCcEEEEechhhhhccHHHHHHHHHHh-CCceeecCCCCCCHHHHHHh
Confidence 567788899999999977432 333221 1 2334455555444 34999999988 556555533 23333221
Q ss_pred HHhhcCCCCccEEEcchHHH-----HHH----hhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccC
Q psy10683 272 IRDVMMPGEWDVCITSYEMC-----IRE----RGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 342 (429)
Q Consensus 272 ~~~~~~~~~~dvvitty~~l-----~~~----~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~ 342 (429)
-..||+-+|-.-| +.+ ...+....+.++||||+..+--. .++.-+++||. ..
T Consensus 258 -------Y~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSILID-----------EARTPLIISGp-~~ 318 (1112)
T PRK12901 258 -------YNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLID-----------DARTPLIISGP-VP 318 (1112)
T ss_pred -------CCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhhhc-----------cccCcEEEeCC-CC
Confidence 2456766663332 222 22333456889999999875221 34445888885 33
Q ss_pred CCHHHHHH
Q psy10683 343 NNLHELWA 350 (429)
Q Consensus 343 n~~~dl~~ 350 (429)
+...++|.
T Consensus 319 ~~~~~~y~ 326 (1112)
T PRK12901 319 KGDDQEFE 326 (1112)
T ss_pred CccHHHHH
Confidence 33334443
No 234
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.99 E-value=0.048 Score=47.94 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=26.0
Q ss_pred CCccEEEcchHHHHHHhhh--h--hccCceEEEecCcccccC
Q psy10683 279 GEWDVCITSYEMCIRERGV--F--KKFNWRYLVIDEAHRIKN 316 (429)
Q Consensus 279 ~~~dvvitty~~l~~~~~~--l--~~~~~~~vIiDEaH~~kn 316 (429)
...||||++|..+...... + ....-.+|||||||++-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 3568999999998765322 2 123456899999999854
No 235
>PRK06526 transposase; Provisional
Probab=93.96 E-value=0.36 Score=45.26 Aligned_cols=29 Identities=24% Similarity=0.096 Sum_probs=24.0
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 197 ENGINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
..+.+.++..++|+|||..+.++...+..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 45677888999999999999998876654
No 236
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.95 E-value=0.2 Score=41.22 Aligned_cols=35 Identities=29% Similarity=0.307 Sum_probs=24.0
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHH
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLL 243 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~ 243 (429)
+|.-++|+|||..+-.++..+. -+++.+....+..
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~------~~~~~i~~~~~~~ 36 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLG------FPFIEIDGSELIS 36 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTT------SEEEEEETTHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhcc------ccccccccccccc
Confidence 5677899999999888876652 2455555555443
No 237
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.89 E-value=2.3 Score=45.38 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..+...+..++ ++ |+....|+|||..+..++..+..
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 5566666666666554 34 77999999999999888876643
No 238
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.88 E-value=0.42 Score=48.97 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCC--C-eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--N-GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~-~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|..++..+......+. + -|+..++|+|||..+-.++..+..
T Consensus 19 q~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 19 QDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3344444545454443 2 378999999999999888876643
No 239
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.88 E-value=1.2 Score=43.96 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHHHHHhcC---CCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 181 MRDYQVRGLNWMISLYENG---INGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~---~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
-|..|.+.+...+.....+ .+.++..+.|+|||..+-.++..+..
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3677777765555433222 35678999999999999888877654
No 240
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.87 E-value=0.61 Score=46.20 Aligned_cols=42 Identities=12% Similarity=0.279 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCC--C-eEeecCCCCCHHHHHHHHHHHHhhh
Q psy10683 185 QVRGLNWMISLYENGI--N-GILADEMGLGKTLQTISLLGYMKHY 226 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~-~ilad~~GlGKT~~~i~~~~~l~~~ 226 (429)
|.+++..+...+..++ + -++..+.|+||+..+.+++..+...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 6677777777777664 3 3678999999999999999988753
No 241
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.86 E-value=0.48 Score=46.18 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCCe-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 181 MRDYQVRGLNWMISLYENGING-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
++|+|....+.+... .+-..+ ++..+.|.|||..+..++..+.-
T Consensus 4 ~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 4 IYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred CCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 468888888777654 112234 56899999999999999988765
No 242
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.85 E-value=1.4 Score=46.61 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..+...+..++ +. ++....|+|||..+..++..+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6667777777766654 34 77899999999999998877754
No 243
>KOG0926|consensus
Probab=93.83 E-value=0.21 Score=52.95 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=79.4
Q ss_pred HHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhh-cccCCCeEE-Ee-ccchH--HH---HHHHHHhhcCCCceEE-EeCC
Q psy10683 194 SLYENGINGILADEMGLGKTLQTISLLGYMKHY-RNIAGPHIV-IV-PKSTL--LN---WMNEFKKWCPTLRAIC-LIGD 264 (429)
Q Consensus 194 ~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~-~~~~~~~LI-V~-P~~ll--~q---W~~e~~~~~~~~~~~~-~~g~ 264 (429)
.....+.-.|++.++|+|||.|.=.|+-..-.. .....+-+| |+ |.-+- .- -..|+..+-......+ |.|+
T Consensus 266 EaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~t 345 (1172)
T KOG0926|consen 266 EAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGT 345 (1172)
T ss_pred HHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEeccc
Confidence 334455568999999999999987776322111 111224233 33 55332 21 2233433211111111 2222
Q ss_pred hhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh-hhccCceEEEecCcccccCchhH-HHHHHHhc--------------
Q psy10683 265 QDARNAMIRDVMMPGEWDVCITSYEMCIRERGV-FKKFNWRYLVIDEAHRIKNEKSK-LSEIVREF-------------- 328 (429)
Q Consensus 265 ~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~-l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~l-------------- 328 (429)
.. ..-.|-++|-..|.++... +.-..+..|||||||.= +-++. +.-++.++
T Consensus 346 i~------------e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER-SvnTDILiGmLSRiV~LR~k~~ke~~~~ 412 (1172)
T KOG0926|consen 346 IG------------EDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER-SVNTDILIGMLSRIVPLRQKYYKEQCQI 412 (1172)
T ss_pred cC------------CCceeEEecchHHHHHHHHhHhhhhceeEEechhhhc-cchHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 11 2335888999988887643 33346789999999983 22222 22222221
Q ss_pred cCCcEEEEeCCccCCCHHHHHHHHhhh
Q psy10683 329 KTTNRLLLTGTPLQNNLHELWALLNFL 355 (429)
Q Consensus 329 ~~~~r~~lTgTP~~n~~~dl~~ll~fl 355 (429)
..-..|+||||---.++.+--.||-.+
T Consensus 413 kpLKLIIMSATLRVsDFtenk~LFpi~ 439 (1172)
T KOG0926|consen 413 KPLKLIIMSATLRVSDFTENKRLFPIP 439 (1172)
T ss_pred CceeEEEEeeeEEecccccCceecCCC
Confidence 233469999998766666544455443
No 244
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.82 E-value=0.68 Score=45.20 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 184 YQVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.|...+..+...+..+. +. ++..+.|.|||..+..++..+..
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c 54 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC 54 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC
Confidence 46666777777666554 45 77899999999999998877654
No 245
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.80 E-value=2.7 Score=42.22 Aligned_cols=41 Identities=17% Similarity=0.076 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCC--C-eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--N-GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~-~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|..++..+...+.++. + -|+..+.|+|||..+..++..+..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5566666666666654 3 357899999999999999877754
No 246
>PRK14974 cell division protein FtsY; Provisional
Probab=93.80 E-value=0.99 Score=44.09 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=29.3
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc----chHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK----STLLNWMNEFK 250 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~----~ll~qW~~e~~ 250 (429)
.++....|.|||.++..++.++... ..+++++... ....||.....
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~---g~~V~li~~Dt~R~~a~eqL~~~a~ 192 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKN---GFSVVIAAGDTFRAGAIEQLEEHAE 192 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcCcHHHHHHHHHHHH
Confidence 4568899999999888887766542 2355556533 34456654433
No 247
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=93.71 E-value=0.71 Score=50.72 Aligned_cols=130 Identities=16% Similarity=0.212 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH----HHHHHHHHhhcCCCc
Q psy10683 182 RDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL----LNWMNEFKKWCPTLR 257 (429)
Q Consensus 182 r~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll----~qW~~e~~~~~~~~~ 257 (429)
++-|+-|---| +.|.|--+.+|=|||+++.. ..++.. -. .+.+=||+.+.-| .+|...+-.|+ ++.
T Consensus 140 ydVQLiGgivL------h~G~IAEM~TGEGKTLvatl-p~yLnA-L~-G~gVHvVTvNDYLA~RDaewm~p~y~fl-GLt 209 (1025)
T PRK12900 140 YDVQLIGGIVL------HSGKISEMATGEGKTLVSTL-PTFLNA-LT-GRGVHVVTVNDYLAQRDKEWMNPVFEFH-GLS 209 (1025)
T ss_pred cchHHhhhHHh------hcCCccccCCCCCcchHhHH-HHHHHH-Hc-CCCcEEEeechHhhhhhHHHHHHHHHHh-CCe
Confidence 34466654333 45678789999999998642 233322 12 2334455555444 34999999988 556
Q ss_pred eEEEeCCh--hhHHHHHHhhcCCCCccEEEcchHHH-----HHH----hhhhhccCceEEEecCcccccCchhHHHHHHH
Q psy10683 258 AICLIGDQ--DARNAMIRDVMMPGEWDVCITSYEMC-----IRE----RGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR 326 (429)
Q Consensus 258 ~~~~~g~~--~~~~~~~~~~~~~~~~dvvitty~~l-----~~~----~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~ 326 (429)
+-+..... ..|+.. -..||+-.|-..| +.+ ...+....+.++||||+..+--.
T Consensus 210 Vg~i~~~~~~~~Rr~a-------Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvLID--------- 273 (1025)
T PRK12900 210 VGVILNTMRPEERREQ-------YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVLID--------- 273 (1025)
T ss_pred eeeeCCCCCHHHHHHh-------CCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhhhc---------
Confidence 65554432 222221 2456776663332 222 22334457889999999876221
Q ss_pred hccCCcEEEEeCC
Q psy10683 327 EFKTTNRLLLTGT 339 (429)
Q Consensus 327 ~l~~~~r~~lTgT 339 (429)
.++.-+++||.
T Consensus 274 --eARTPLIISgp 284 (1025)
T PRK12900 274 --EARTPLIISGP 284 (1025)
T ss_pred --cccCceEEeCC
Confidence 34445888884
No 248
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.70 E-value=0.83 Score=47.23 Aligned_cols=42 Identities=17% Similarity=0.011 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCC---CeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 184 YQVRGLNWMISLYENGI---NGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~~---~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
-|...+..+...+..+. ..++..+.|+|||..+-.++..+..
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 36666666666565554 4678999999999999988877754
No 249
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.62 E-value=4.9 Score=44.09 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHHH-Hhc-CC-CeE-eecCCCCCHHHHHHHHHHHHhh
Q psy10683 180 EMRDYQVRGLNWMISL-YEN-GI-NGI-LADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~-~~~-~~-~~i-lad~~GlGKT~~~i~~~~~l~~ 225 (429)
.-|+-|.+.+...+.- +.. +. +++ +...+|+|||.++-.++..+..
T Consensus 758 PhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 758 PCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578888887655543 332 22 333 7999999999999888876654
No 250
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.58 E-value=2.4 Score=43.61 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCC---CeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI---NGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~---~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...++.+...+..++ .-++..+.|+|||..+..++..+..
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 4555556656555554 3577999999999999888766644
No 251
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.55 E-value=0.28 Score=49.02 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCC-----------C-eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI-----------N-GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~-----------~-~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|..++..+......+. + -++..+.|.|||..+.+++..+..
T Consensus 10 q~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 10 QEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred hHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 5555555555555432 2 357899999999999999877654
No 252
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=93.47 E-value=0.59 Score=50.59 Aligned_cols=119 Identities=16% Similarity=0.110 Sum_probs=68.4
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHH----HHHHHHHhhcC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLL----NWMNEFKKWCP 254 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~----qW~~e~~~~~~ 254 (429)
...++-|+-|.-.| ..|.|.-+.+|=|||+++.. .+++.. -..+.+=||+.+.-|. .|...+-+|+
T Consensus 77 ~r~ydVQliGglvL------h~G~IAEMkTGEGKTLvAtL-payLnA--L~GkgVhVVTvNdYLA~RDae~mg~vy~fL- 146 (925)
T PRK12903 77 KRPYDVQIIGGIIL------DLGSVAEMKTGEGKTITSIA-PVYLNA--LTGKGVIVSTVNEYLAERDAEEMGKVFNFL- 146 (925)
T ss_pred CCcCchHHHHHHHH------hcCCeeeecCCCCccHHHHH-HHHHHH--hcCCceEEEecchhhhhhhHHHHHHHHHHh-
Confidence 34445577665433 34668889999999997643 233322 1234455666665553 3999999988
Q ss_pred CCceEEEeCCh--hhHHHHHHhhcCCCCccEEEcchHHHHH-----H----hhhhhccCceEEEecCcccc
Q psy10683 255 TLRAICLIGDQ--DARNAMIRDVMMPGEWDVCITSYEMCIR-----E----RGVFKKFNWRYLVIDEAHRI 314 (429)
Q Consensus 255 ~~~~~~~~g~~--~~~~~~~~~~~~~~~~dvvitty~~l~~-----~----~~~l~~~~~~~vIiDEaH~~ 314 (429)
++.+-+..... ..+... -..||+-+|...|.- + ........+.++||||+..+
T Consensus 147 GLsvG~i~~~~~~~~rr~a-------Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 147 GLSVGINKANMDPNLKREA-------YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred CCceeeeCCCCChHHHHHh-------ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 45555444322 222221 235677777544332 2 12223346778888888876
No 253
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.45 E-value=1.4 Score=45.66 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCC--e-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGIN--G-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~~--~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|..++..+......+.- . ++..+.|+|||..+.+++..+..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 56666666666666543 3 78999999999999998887754
No 254
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=93.34 E-value=1.2 Score=40.84 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHhhhcccCCCeEEE-e-ccchHHHHHHHHHhh
Q psy10683 207 EMGLGKTLQTISLLGYMKHYRNIAGPHIVI-V-PKSTLLNWMNEFKKW 252 (429)
Q Consensus 207 ~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV-~-P~~ll~qW~~e~~~~ 252 (429)
-=|.|||..+++++..+... .+++.|| + |..-+..|.+...+-
T Consensus 10 KGGaGKTT~~~~LAs~la~~---G~~V~lIDaDpn~pl~~W~~~a~~~ 54 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAAR---GARVALIDADPNQPLAKWAENAQRP 54 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHC---CCeEEEEeCCCCCcHHHHHHhcccc
Confidence 34899999999999888652 3455666 3 888899997765443
No 255
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.31 E-value=3.5 Score=39.61 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCC--CeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 185 QVRGLNWMISLYENGI--NGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
|.+++..+......+. +.++..+.|+|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 4455555555555443 468899999999998888776553
No 256
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.30 E-value=1.4 Score=46.51 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCC---CeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI---NGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~---~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...++.+...+..++ .-|+..+.|+|||..+..++..+..
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 5566666666666654 3467899999999999999887754
No 257
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.25 E-value=1.1 Score=46.70 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCCC---eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGIN---GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~~---~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|..++..+...+..+.. -|+..+.|+|||..+..++..+..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 55566666666666543 367899999999999998877754
No 258
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.24 E-value=1.3 Score=45.37 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.1
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.++..+.|+|||..+-++...+..
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~ 174 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILE 174 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 577999999999998888876654
No 259
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.19 E-value=0.95 Score=47.01 Aligned_cols=41 Identities=15% Similarity=0.022 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhcCCC--e-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGIN--G-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~~--~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..+...+..+.- . ++..+.|.|||..+..++..+..
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 55556666666665543 3 67999999999999988877654
No 260
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.18 E-value=1.3 Score=41.14 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCC-eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHH------HHHHHHHh
Q psy10683 188 GLNWMISLYENGIN-GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLL------NWMNEFKK 251 (429)
Q Consensus 188 ~v~~l~~~~~~~~~-~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~------qW~~e~~~ 251 (429)
++.-+......+++ ..+..+.|+|||+..=++...+.. ....+|+.|+..+. -|..++..
T Consensus 39 ~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 39 ALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred HHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 44334344444553 456889999999988755544432 33344566765543 36655543
No 261
>PHA02533 17 large terminase protein; Provisional
Probab=93.16 E-value=0.66 Score=48.34 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=76.9
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH-HHHHHHhh---cC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN-WMNEFKKW---CP 254 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q-W~~e~~~~---~~ 254 (429)
..|.|+|..-+..|. .++-.++.-.=..|||..+.+++.+.... .....+++++|..--.. -.+.++.. .|
T Consensus 58 f~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~-~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCF-NKDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 478899999887663 23334666778899999887766544432 22345666677422111 11233322 23
Q ss_pred CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHH-hcc--CC
Q psy10683 255 TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFK--TT 331 (429)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~-~l~--~~ 331 (429)
.+........ .+ ......+...|.+.+ .+....+....+++|+||+|.+++.. .+..++. .+. ..
T Consensus 133 ~l~~~~i~~~--~~----~~I~l~NGS~I~~ls-----s~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~lasg~~ 200 (534)
T PHA02533 133 DFLQPGIVEW--NK----GSIELENGSKIGAYA-----SSPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISSGRS 200 (534)
T ss_pred HHhhcceeec--Cc----cEEEeCCCCEEEEEe-----CCCCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHHcCCC
Confidence 2110000000 00 000001111222222 12234566678899999999987643 2223222 222 22
Q ss_pred cEEEEeCCcc-CCCHHHHHH
Q psy10683 332 NRLLLTGTPL-QNNLHELWA 350 (429)
Q Consensus 332 ~r~~lTgTP~-~n~~~dl~~ 350 (429)
.++.+..||- .|..-++|.
T Consensus 201 ~r~iiiSTp~G~n~fye~~~ 220 (534)
T PHA02533 201 SKIIITSTPNGLNHFYDIWT 220 (534)
T ss_pred ceEEEEECCCchhhHHHHHH
Confidence 4688888885 234444443
No 262
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=93.08 E-value=0.77 Score=49.98 Aligned_cols=127 Identities=14% Similarity=0.129 Sum_probs=72.0
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~ 257 (429)
+..|.+-|++|+..+.. .+.-.+|....|+|||.++-+++..+.. ....+++++|...-.+=..+- . +..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~---~g~~V~~~ApTg~Aa~~L~~~---~-g~~ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEA---AGYRVIGAALSGKAAEGLQAE---S-GIE 419 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHHHHHhc---c-CCc
Confidence 45788999999986642 2345688999999999887776655443 234567777886544322211 0 000
Q ss_pred eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-cCCcEEEE
Q psy10683 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-KTTNRLLL 336 (429)
Q Consensus 258 ~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~~~~r~~l 336 (429)
...+ ..+...+ .. ........++|||||+.++.. ......+... ....+++|
T Consensus 420 a~Ti-------~~~~~~~----------------~~--~~~~~~~~~llIvDEasMv~~--~~~~~Ll~~~~~~~~kliL 472 (744)
T TIGR02768 420 SRTL-------ASLEYAW----------------AN--GRDLLSDKDVLVIDEAGMVGS--RQMARVLKEAEEAGAKVVL 472 (744)
T ss_pred eeeH-------HHHHhhh----------------cc--CcccCCCCcEEEEECcccCCH--HHHHHHHHHHHhcCCEEEE
Confidence 0000 0000000 00 001113568999999999854 3344444422 46778999
Q ss_pred eCCcc
Q psy10683 337 TGTPL 341 (429)
Q Consensus 337 TgTP~ 341 (429)
.|=|-
T Consensus 473 VGD~~ 477 (744)
T TIGR02768 473 VGDPE 477 (744)
T ss_pred ECChH
Confidence 99443
No 263
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.07 E-value=0.16 Score=53.17 Aligned_cols=165 Identities=17% Similarity=0.278 Sum_probs=96.3
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHH-HHHhhc---
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMN-EFKKWC--- 253 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~-e~~~~~--- 253 (429)
....|||++-.+.|-... -....+.-..-+|||.+++.++.+... ...+|+|++.|. .....|.. .|...+
T Consensus 15 ~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~--~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSID--QDPGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEE--eCCCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 367799998877553311 234567778889999988888876654 446899999999 45555663 344333
Q ss_pred CCCceEEEeCC-hhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCccccc----CchhHH---HHHH
Q psy10683 254 PTLRAICLIGD-QDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIK----NEKSKL---SEIV 325 (429)
Q Consensus 254 ~~~~~~~~~g~-~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~k----n~~s~~---~~~~ 325 (429)
|.++-.+.... .+..+..... ...+. .+.++... ....|.....++|++||...+- +..... .+..
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k-~f~gg-~l~~~ga~----S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~ 164 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYK-RFPGG-FLYLVGAN----SPSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRT 164 (557)
T ss_pred HHHHHHhCchhhcccCCchhhe-ecCCC-EEEEEeCC----CCcccccCCcCEEEEechhhccccCccCCCHHHHHHHHH
Confidence 33332222200 1111111111 11122 23333332 1345667788899999999982 222333 3334
Q ss_pred HhccCCcEEEEeCCccCCCHHHHHHHHh
Q psy10683 326 REFKTTNRLLLTGTPLQNNLHELWALLN 353 (429)
Q Consensus 326 ~~l~~~~r~~lTgTP~~n~~~dl~~ll~ 353 (429)
..+....++++..||.......+..++.
T Consensus 165 ~tf~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 165 KTFGSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred hhhccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 4455778999999998876555555543
No 264
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.07 E-value=1.4 Score=37.26 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=24.7
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK 239 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~ 239 (429)
++.-+.|+|||..+..++..... ..++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECC
Confidence 56778999999999888876644 34566666544
No 265
>PF13173 AAA_14: AAA domain
Probab=93.06 E-value=1.2 Score=36.88 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=25.9
Q ss_pred CceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccCC
Q psy10683 302 NWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQN 343 (429)
Q Consensus 302 ~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~n 343 (429)
.-.+|+|||+|++.+........+. -....++++||+-...
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d-~~~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVD-NGPNIKIILTGSSSSL 101 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHH-hccCceEEEEccchHH
Confidence 4568999999999763322222222 2235689999986433
No 266
>KOG0923|consensus
Probab=93.01 E-value=0.43 Score=49.64 Aligned_cols=143 Identities=17% Similarity=0.124 Sum_probs=68.5
Q ss_pred HHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchH-----HHHHHHHHhhcCC-CceEEEeCCh
Q psy10683 194 SLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTL-----LNWMNEFKKWCPT-LRAICLIGDQ 265 (429)
Q Consensus 194 ~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll-----~qW~~e~~~~~~~-~~~~~~~g~~ 265 (429)
.....++--|+..++|+|||.|.=.++ .+..-..+...|-| |.-+- .--.+|+.-.++. .-..+-+-+.
T Consensus 275 ~av~e~QVLiI~GeTGSGKTTQiPQyL---~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdc 351 (902)
T KOG0923|consen 275 KAVKEHQVLIIVGETGSGKTTQIPQYL---YEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDC 351 (902)
T ss_pred HHHHhCcEEEEEcCCCCCccccccHHH---HhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccc
Confidence 344556667889999999999875444 33232333334555 55332 2223333221111 0000000000
Q ss_pred hhHHHHHHhhcCCCCccEEEcchHHHHHHhhh-hhccCceEEEecCcccccCchhHHHHHHH---hccCC-cEEEEeCCc
Q psy10683 266 DARNAMIRDVMMPGEWDVCITSYEMCIRERGV-FKKFNWRYLVIDEAHRIKNEKSKLSEIVR---EFKTT-NRLLLTGTP 340 (429)
Q Consensus 266 ~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~-l~~~~~~~vIiDEaH~~kn~~s~~~~~~~---~l~~~-~r~~lTgTP 340 (429)
.+ .+--+=.+|-.+|.++.-. ..--.+.+|||||||.=.-.+-.+.-.++ .++.. ..++.|||-
T Consensus 352 TS-----------ekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~ 420 (902)
T KOG0923|consen 352 TS-----------EKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATM 420 (902)
T ss_pred cC-----------cceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeecccc
Confidence 00 1112345666777665322 11224779999999983222222333333 33333 446678887
Q ss_pred cCCCHHHHHH
Q psy10683 341 LQNNLHELWA 350 (429)
Q Consensus 341 ~~n~~~dl~~ 350 (429)
=...++++|.
T Consensus 421 DAekFS~fFD 430 (902)
T KOG0923|consen 421 DAEKFSAFFD 430 (902)
T ss_pred CHHHHHHhcc
Confidence 5444444443
No 267
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.81 E-value=3.5 Score=43.66 Aligned_cols=41 Identities=17% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCCC--e-EeecCCCCCHHHHHHHHHHHHh
Q psy10683 184 YQVRGLNWMISLYENGIN--G-ILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~~~--~-ilad~~GlGKT~~~i~~~~~l~ 224 (429)
.|...+..+...+..+.- . |+..+.|+|||..+..++..+.
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 366777777776666543 3 7899999999999999987765
No 268
>PRK04195 replication factor C large subunit; Provisional
Probab=92.79 E-value=2 Score=44.33 Aligned_cols=42 Identities=19% Similarity=0.099 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHhc---CCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 182 RDYQVRGLNWMISLYEN---GINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 182 r~~Q~~~v~~l~~~~~~---~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
.+.+...+.-++..+.+ ....+|..+.|+|||..+-+++..+
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34444444333333433 3457889999999999887776543
No 269
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.69 E-value=1.2 Score=44.31 Aligned_cols=87 Identities=7% Similarity=0.097 Sum_probs=51.0
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCc
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEW 281 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 281 (429)
.++.-++|.|||..++.++..+... .+++|.|.-.....|......+..-...
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~~qi~~Ra~rlg~~~~------------------------ 137 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESPEQIKLRADRLGISTE------------------------ 137 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCHHHHHHHHHHcCCCcc------------------------
Confidence 4778999999999999888766542 3577887765545554443333211100
Q ss_pred cEEEcchHHHHHHhhhhhccCceEEEecCccccc
Q psy10683 282 DVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIK 315 (429)
Q Consensus 282 dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~k 315 (429)
++.+.....+..-...+.....++||||+.+.+.
T Consensus 138 ~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 138 NLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred cEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 1111111111122223345678999999999874
No 270
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.68 E-value=1.3 Score=42.76 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=28.5
Q ss_pred CceEEEecCcccccCch--hHHHHHHHhccCCcEEEEeCCccCCCHHHHHH
Q psy10683 302 NWRYLVIDEAHRIKNEK--SKLSEIVREFKTTNRLLLTGTPLQNNLHELWA 350 (429)
Q Consensus 302 ~~~~vIiDEaH~~kn~~--s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ 350 (429)
..++|||||+|.+.... ..+...+.......++++|++....-...+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 45789999999983322 12222344445666788888754433333333
No 271
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.61 E-value=1.7 Score=43.76 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.2
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.+|..+.|+|||..+-++...+..
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~ 162 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILE 162 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 468999999999999888877655
No 272
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.61 E-value=2.2 Score=43.64 Aligned_cols=46 Identities=13% Similarity=0.019 Sum_probs=28.0
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e 248 (429)
.++..++|+|||..+-++...+.. ......++.+.+..++......
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~~~~f~~~~~~~ 189 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMSGDEFARKAVDI 189 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEHHHHHHHHHHH
Confidence 567999999999888777766554 2223344444444444433333
No 273
>PRK08116 hypothetical protein; Validated
Probab=92.59 E-value=1.9 Score=40.73 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=28.1
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLL 243 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~ 243 (429)
+.+|..++|+|||..+.+++..+... ..+++++.-..++.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~ 155 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLN 155 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHH
Confidence 46789999999999999998887653 34555554334443
No 274
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.44 E-value=3 Score=42.49 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.0
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.+|..++|+|||..+-++...+..
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~ 156 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHH
Confidence 577899999999998888876654
No 275
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.43 E-value=1.3 Score=38.83 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=34.3
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhh
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKW 252 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~ 252 (429)
++..++|+|||..++.++..... ...+++++.......+..+.+..+
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCCHHHHHHHHHHc
Confidence 67889999999999988876543 246788888766666655555443
No 276
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.36 E-value=1.2 Score=43.54 Aligned_cols=46 Identities=11% Similarity=0.244 Sum_probs=37.9
Q ss_pred CChHHHHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 180 EMRDYQVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.++|+|......+...+..++ .+ ++..+.|+||+..+.+++.++.-
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC 50 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC 50 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC
Confidence 357888888888888887765 34 56899999999999999988865
No 277
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.36 E-value=1 Score=47.25 Aligned_cols=41 Identities=17% Similarity=0.091 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCC---eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGIN---GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~~---~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|..++..+.....++.- -++..+.|.|||..+.+++..+..
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 55555556666655543 367999999999999998877654
No 278
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.24 E-value=1.1 Score=49.38 Aligned_cols=41 Identities=27% Similarity=0.250 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhc--CCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYEN--GINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~--~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|..-+..++..+.. ..+.+|.-++|.|||..+=.++..+..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 33446666665443 347899999999999988777766543
No 279
>KOG1131|consensus
Probab=92.19 E-value=0.46 Score=48.07 Aligned_cols=67 Identities=13% Similarity=0.073 Sum_probs=50.0
Q ss_pred cccCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccch
Q psy10683 175 YIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKST 241 (429)
Q Consensus 175 ~~~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~l 241 (429)
+.+=...+|-|..-..-+...+..++.|+|-++.|+|||+.-++++..........-.-||-|...+
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTv 77 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTV 77 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcc
Confidence 3333467788877776677777889999999999999999999988665554444445588887644
No 280
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.07 E-value=1.9 Score=44.92 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...++.+...+..+. ++ |+..+.|+|||..+-.++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5556666666555543 34 68999999999999888876643
No 281
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.03 E-value=4.6 Score=40.16 Aligned_cols=134 Identities=17% Similarity=0.176 Sum_probs=75.1
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCC
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGE 280 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 280 (429)
-..|..++|.|||.+..-+++.... ......+=||.-.+-.---.++++.++. .. +-
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~--------------------im--~v 261 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYAD--------------------IM--GV 261 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHH--------------------Hh--CC
Confidence 3467899999999876666655442 2333444455433222111222222220 00 11
Q ss_pred ccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc----cCCcEEEEeCCccCCCHHHHHHHHhhhC
Q psy10683 281 WDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF----KTTNRLLLTGTPLQNNLHELWALLNFLL 356 (429)
Q Consensus 281 ~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l----~~~~r~~lTgTP~~n~~~dl~~ll~fl~ 356 (429)
.=.++.+..-|......+... ++|.||=+-+-.-......++-.-+ .....+.||+|-=.+++.+++..++.+.
T Consensus 262 p~~vv~~~~el~~ai~~l~~~--d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~ 339 (407)
T COG1419 262 PLEVVYSPKELAEAIEALRDC--DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFP 339 (407)
T ss_pred ceEEecCHHHHHHHHHHhhcC--CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCC
Confidence 113344444444445555543 7899998877533233333322222 3455689999999999999999999887
Q ss_pred CCC
Q psy10683 357 PDI 359 (429)
Q Consensus 357 p~~ 359 (429)
...
T Consensus 340 i~~ 342 (407)
T COG1419 340 IDG 342 (407)
T ss_pred cce
Confidence 754
No 282
>PRK05642 DNA replication initiation factor; Validated
Probab=92.00 E-value=3.3 Score=38.27 Aligned_cols=37 Identities=19% Similarity=0.418 Sum_probs=23.5
Q ss_pred ceEEEecCcccccCchh---HHHHHHHhc-cCCcEEEEeCC
Q psy10683 303 WRYLVIDEAHRIKNEKS---KLSEIVREF-KTTNRLLLTGT 339 (429)
Q Consensus 303 ~~~vIiDEaH~~kn~~s---~~~~~~~~l-~~~~r~~lTgT 339 (429)
.+++|||+.|.+.+... .+...+..+ ....++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 36899999998855322 233344333 34567888887
No 283
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.99 E-value=1.8 Score=42.01 Aligned_cols=45 Identities=11% Similarity=0.300 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHHHhcCC--CeE-eecCCCCCHHHHHHHHHHHHhh
Q psy10683 181 MRDYQVRGLNWMISLYENGI--NGI-LADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~--~~i-lad~~GlGKT~~~i~~~~~l~~ 225 (429)
+.|+|......+...+..++ +++ +..+.|.||+..+..++.++.-
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 46888888888888887765 354 6889999999999999988765
No 284
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.89 E-value=4.1 Score=43.10 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCC--C-eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--N-GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~-~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..+...+.+++ . -|+..+.|+|||..+..++..+..
T Consensus 21 Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 21 QETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 3444555555555543 3 356899999999999988877653
No 285
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.89 E-value=1.1 Score=47.20 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..+......+. +. |+..+.|+|||..+..++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 5555666666665553 34 67899999999999998877654
No 286
>PRK08727 hypothetical protein; Validated
Probab=91.84 E-value=1.4 Score=40.70 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=19.4
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.++..+.|+|||-.+.+++..+..
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 578999999999888887766544
No 287
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.78 E-value=0.3 Score=51.26 Aligned_cols=146 Identities=14% Similarity=0.188 Sum_probs=80.0
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc-hHHHHHHHH----HhhcCCCceEEEeCChhhHHHHHHhhc
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS-TLLNWMNEF----KKWCPTLRAICLIGDQDARNAMIRDVM 276 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~-ll~qW~~e~----~~~~~~~~~~~~~g~~~~~~~~~~~~~ 276 (429)
.++.-+=--|||..+..++..+.. ......+++++|.. ....-.+|+ ++|++...+....|. . +.-..
T Consensus 257 tVflVPRR~GKTwivv~iI~~ll~-s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~-I~i~f 329 (738)
T PHA03368 257 TVFLVPRRHGKTWFLVPLIALALA-TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----T-ISFSF 329 (738)
T ss_pred eEEEecccCCchhhHHHHHHHHHH-hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----E-EEEEe
Confidence 456666778999987766665543 22345677888773 333344444 456655333232221 0 10001
Q ss_pred CCCC-ccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc--cCCcEEEEeCCc-----------cC
Q psy10683 277 MPGE-WDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF--KTTNRLLLTGTP-----------LQ 342 (429)
Q Consensus 277 ~~~~-~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l--~~~~r~~lTgTP-----------~~ 342 (429)
..+. --+...| . ++.+..+...++++||||||.++. .....++--+ .....|.+|-|= +.
T Consensus 330 ~nG~kstI~FaS---a-rntNsiRGqtfDLLIVDEAqFIk~--~al~~ilp~l~~~n~k~I~ISS~Ns~~~sTSFL~nLk 403 (738)
T PHA03368 330 PDGSRSTIVFAS---S-HNTNGIRGQDFNLLFVDEANFIRP--DAVQTIMGFLNQTNCKIIFVSSTNTGKASTSFLYNLK 403 (738)
T ss_pred cCCCccEEEEEe---c-cCCCCccCCcccEEEEechhhCCH--HHHHHHHHHHhccCccEEEEecCCCCccchHHHHhhc
Confidence 1121 1222221 1 334567777999999999999976 3333333222 445567776542 34
Q ss_pred CCHHHHHHHHhhhCCCCC
Q psy10683 343 NNLHELWALLNFLLPDIF 360 (429)
Q Consensus 343 n~~~dl~~ll~fl~p~~~ 360 (429)
|...++.+.++|+.++..
T Consensus 404 ~a~~~lLNVVsYvCdeH~ 421 (738)
T PHA03368 404 GAADELLNVVTYICDEHM 421 (738)
T ss_pred CchhhheeeEEEEChhhh
Confidence 555667776777766654
No 288
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.78 E-value=2.4 Score=41.17 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHHHHHhcCC--C-eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 180 EMRDYQVRGLNWMISLYENGI--N-GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~--~-~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.++|+|......+...+..++ + -++..+.|+||+..+.+++..+.-
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 578999999999988887665 3 356899999999999999988765
No 289
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=0.76 Score=47.54 Aligned_cols=68 Identities=19% Similarity=0.140 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHHHHHHh--------cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHh
Q psy10683 180 EMRDYQVRGLNWMISLYE--------NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKK 251 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~--------~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~ 251 (429)
..+....+++.|.+...+ ...+.+|+..+|+|||+.+-++.... ..+++-|-...++..|..|..+
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHH
Confidence 355677788888776554 12246789999999999998877532 3356655555999999988876
Q ss_pred hc
Q psy10683 252 WC 253 (429)
Q Consensus 252 ~~ 253 (429)
..
T Consensus 323 ~i 324 (494)
T COG0464 323 NI 324 (494)
T ss_pred HH
Confidence 43
No 290
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.70 E-value=1.7 Score=43.08 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=65.1
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcC--CCceEEEeCChhhHHHHHHhhc
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCP--TLRAICLIGDQDARNAMIRDVM 276 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~ 276 (429)
+...+|..++|.|||.++..++..+....+ ..++.+|+.......=.+.+..|.. ++.+.....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G-~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~------------- 202 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFG-ASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKD------------- 202 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecccccccHHHHHHHHHHHcCCceEecCC-------------
Confidence 334567899999999999888876543211 1345555543321111222222221 111111111
Q ss_pred CCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-----cCCcEEEEeCCccCCCHHHHHHH
Q psy10683 277 MPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-----KTTNRLLLTGTPLQNNLHELWAL 351 (429)
Q Consensus 277 ~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-----~~~~r~~lTgTP~~n~~~dl~~l 351 (429)
-..+......+. +.++|+||.+-+.... ......+..+ .....++|++|-=...+.+.+.-
T Consensus 203 -----------~~~l~~~l~~l~--~~DlVLIDTaG~~~~d-~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~ 268 (374)
T PRK14722 203 -----------GGDLQLALAELR--NKHMVLIDTIGMSQRD-RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQA 268 (374)
T ss_pred -----------cccHHHHHHHhc--CCCEEEEcCCCCCccc-HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHH
Confidence 111111112222 3578999999765332 2233333333 22446888999877777776555
Q ss_pred Hhh
Q psy10683 352 LNF 354 (429)
Q Consensus 352 l~f 354 (429)
+.-
T Consensus 269 f~~ 271 (374)
T PRK14722 269 YRS 271 (374)
T ss_pred HHH
Confidence 443
No 291
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=91.59 E-value=1.7 Score=48.46 Aligned_cols=128 Identities=16% Similarity=0.074 Sum_probs=70.9
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~ 257 (429)
+..|.+-|.+++..+.. ...-.++.-..|+|||.+.-++...+.. ....++.++|+..-..=..+ -.
T Consensus 344 g~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~~~~~~~e~---~G~~V~~~ApTGkAA~~L~e---~t---- 410 (988)
T PRK13889 344 GLVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLGVAREAWEA---AGYEVRGAALSGIAAENLEG---GS---- 410 (988)
T ss_pred CCCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEecCcHHHHHHHhh---cc----
Confidence 45789999999986652 2234678899999999875444433322 23456667787654322211 00
Q ss_pred eEEEeCChhh-HHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-cCCcEEE
Q psy10683 258 AICLIGDQDA-RNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-KTTNRLL 335 (429)
Q Consensus 258 ~~~~~g~~~~-~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~~~~r~~ 335 (429)
|.... -..+...+ .. ....-..-++|||||+-++.. ....+.+... ....+++
T Consensus 411 -----Gi~a~TI~sll~~~----------------~~--~~~~l~~~~vlIVDEASMv~~--~~m~~LL~~a~~~garvV 465 (988)
T PRK13889 411 -----GIASRTIASLEHGW----------------GQ--GRDLLTSRDVLVIDEAGMVGT--RQLERVLSHAADAGAKVV 465 (988)
T ss_pred -----CcchhhHHHHHhhh----------------cc--cccccccCcEEEEECcccCCH--HHHHHHHHhhhhCCCEEE
Confidence 00000 00000000 00 000112457999999999854 3444455433 5678999
Q ss_pred EeCCccCC
Q psy10683 336 LTGTPLQN 343 (429)
Q Consensus 336 lTgTP~~n 343 (429)
|.|=|-|-
T Consensus 466 LVGD~~QL 473 (988)
T PRK13889 466 LVGDPQQL 473 (988)
T ss_pred EECCHHHc
Confidence 99977654
No 292
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=91.50 E-value=0.38 Score=46.08 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc-ccCCCeEEEeccchH
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR-NIAGPHIVIVPKSTL 242 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~-~~~~~~LIV~P~~ll 242 (429)
|.+-|.++|.+ ..+..++....|+|||.+.+.-+.++.... .....+|+|+++...
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 45678888864 244556677799999999998887776644 455678999988553
No 293
>PRK06893 DNA replication initiation factor; Validated
Probab=91.44 E-value=3 Score=38.31 Aligned_cols=24 Identities=8% Similarity=-0.154 Sum_probs=19.4
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.+|..++|+|||-.+.+++..+..
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 378899999999988888766544
No 294
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.34 E-value=4.1 Score=42.01 Aligned_cols=41 Identities=20% Similarity=0.071 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHh
Q psy10683 184 YQVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~ 224 (429)
-|...+..+......+. ++ ++..+.|.|||..+..++..+.
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36666777777776654 34 5799999999999888877664
No 295
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.25 E-value=7.4 Score=41.06 Aligned_cols=41 Identities=17% Similarity=0.094 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCC--C-eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--N-GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~-~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..+...+.++. + -++..+.|+|||..|..++..+..
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4555566666665543 2 367999999999999999887754
No 296
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.18 E-value=1.8 Score=39.53 Aligned_cols=26 Identities=19% Similarity=0.063 Sum_probs=20.2
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
+...++..+.|+|||..+.++.....
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567899999999998887776543
No 297
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.01 E-value=2.9 Score=40.56 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhhh
Q psy10683 180 EMRDYQVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKHY 226 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~~ 226 (429)
.+.|+|......+...+..++ .+ ++..+.|+||+..+..++.++.-.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~ 52 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQ 52 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 467888888888888777665 23 568999999999999999887653
No 298
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.83 E-value=2.1 Score=43.24 Aligned_cols=21 Identities=33% Similarity=0.292 Sum_probs=17.5
Q ss_pred CeEeecCCCCCHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~ 221 (429)
+.+|..+.|+|||..+-.+..
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 568899999999988877654
No 299
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.83 E-value=7.7 Score=40.82 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..+...+..+. +. ++..+.|+|||..+-.++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4445555555555443 34 56999999999999888766543
No 300
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=90.79 E-value=0.86 Score=49.76 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=65.5
Q ss_pred cEEEcchHHHHHHh--hhhhccCceEEEecCcccccCchhHHHHHHHhc----cCCcEEEEeCCccCC--CHHHHHHHHh
Q psy10683 282 DVCITSYEMCIRER--GVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF----KTTNRLLLTGTPLQN--NLHELWALLN 353 (429)
Q Consensus 282 dvvitty~~l~~~~--~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l----~~~~r~~lTgTP~~n--~~~dl~~ll~ 353 (429)
.|+++|-..+..|. +.+.--....||+||||++... +.-.-.++.+ +..+..++|+.|-.- ....+-.++.
T Consensus 9 gi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~-~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk 87 (814)
T TIGR00596 9 GIFSITSRILVVDLLTGIIPPELITGILVLRADRIIES-SQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMR 87 (814)
T ss_pred CEEEEechhhHhHHhcCCCCHHHccEEEEeeccccccc-ccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHHH
Confidence 48888888887764 2233335678999999999543 3333333333 455678999999542 2233333333
Q ss_pred hhCCCCCCChHHHHhhhcccccCCChhHHHHHHHHhhhhhhhhchhHHhhcCCC--ceEEEEEEcCCHHHHHHHHHh
Q psy10683 354 FLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRRLKSEVEKRLKP--KKELKVYVGLSKMQREWYTKV 428 (429)
Q Consensus 354 fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~lRr~k~~v~~~LP~--~~e~~v~v~~s~~Q~~~Y~~i 428 (429)
-|...... ++-|.-.+|...|-+ .....+.|+||+.-+++...+
T Consensus 88 ~L~i~~v~-------------------------------l~prf~~~V~~~l~~~~~~V~ei~V~l~~~m~~Iq~~l 133 (814)
T TIGR00596 88 NLFLRHVY-------------------------------LWPRFHVEVASSLEKHKAEVIELHVSLTDSMSQIQSAI 133 (814)
T ss_pred HhCcCeEE-------------------------------EeCCCchHHHHHhccCCCeEEEEEeCCCHHHHHHHHHH
Confidence 22221110 111122333333322 356688999999999887765
No 301
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.78 E-value=0.16 Score=54.43 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=33.8
Q ss_pred CCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccC
Q psy10683 33 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76 (429)
Q Consensus 33 ~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~ 76 (429)
...|||||.+++.|+... ....+||+..-+|.|||+..++.+.
T Consensus 253 ~~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~ 295 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAAC 295 (732)
T ss_pred CCCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHH
Confidence 468999999999988431 1125799999999999999987654
No 302
>PTZ00293 thymidine kinase; Provisional
Probab=90.78 E-value=1.9 Score=39.10 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=24.8
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS 240 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ 240 (429)
++..+|++|||...|..+... ....++++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y---~~ag~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRF---TYSEKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHH---HHcCCceEEEEecc
Confidence 567899999998776655433 33456788888864
No 303
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.74 E-value=1.8 Score=46.49 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|..++..+......+. ++ ++..+.|.|||..|-.++..+..
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 5566666666666654 34 67999999999999888876644
No 304
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.64 E-value=1.9 Score=45.83 Aligned_cols=41 Identities=15% Similarity=0.031 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCC--C-eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--N-GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~-~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..+...+.++. + -|+..+.|.|||..|..++..+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6677777777676654 3 357899999999999999877654
No 305
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.57 E-value=2.6 Score=42.99 Aligned_cols=47 Identities=9% Similarity=0.183 Sum_probs=33.7
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKK 251 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~ 251 (429)
.++.-++|.|||..++.++..+.. ...++|.|.-.....|......+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccccHHHHHHHHHH
Confidence 467999999999999998876653 24577888766556665544444
No 306
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.50 E-value=3.6 Score=43.78 Aligned_cols=42 Identities=14% Similarity=-0.039 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcCCC---eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 184 YQVRGLNWMISLYENGIN---GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~~~---~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.|...+..+...+..+.- -++..+.|+|||..+.+++..+..
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 356666767666666543 377899999999999999987754
No 307
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=90.37 E-value=5 Score=40.00 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHH-h--cCCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 182 RDYQVRGLNWMISLY-E--NGINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 182 r~~Q~~~v~~l~~~~-~--~~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|.-|.+.+.-.+... . .+.+.++..+.|+|||..+-.++..+..
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554443222 2 2245788999999999999888877655
No 308
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=90.31 E-value=2.7 Score=47.38 Aligned_cols=128 Identities=16% Similarity=0.119 Sum_probs=72.3
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCce
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRA 258 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~ 258 (429)
..|-+-|.+++..+. ..+.-+++....|+|||.+.-++...+.. ....++.++|..--.+ .+.+-. ++..
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~---~G~~V~g~ApTgkAA~---~L~e~~-Gi~a 449 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEA---AGYRVVGGALAGKAAE---GLEKEA-GIQS 449 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEcCcHHHHH---HHHHhh-CCCe
Confidence 578999999998653 23344688889999999887776654433 2345666677754332 222211 1110
Q ss_pred EEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-cCCcEEEEe
Q psy10683 259 ICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-KTTNRLLLT 337 (429)
Q Consensus 259 ~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~~~~r~~lT 337 (429)
..+. .+...+. .....+ -.-++||||||.++.. ......+... .+..+++|.
T Consensus 450 ~TIa-------s~ll~~~----------------~~~~~l--~~~~vlVIDEAsMv~~--~~m~~Ll~~~~~~garvVLV 502 (1102)
T PRK13826 450 RTLS-------SWELRWN----------------QGRDQL--DNKTVFVLDEAGMVAS--RQMALFVEAVTRAGAKLVLV 502 (1102)
T ss_pred eeHH-------HHHhhhc----------------cCccCC--CCCcEEEEECcccCCH--HHHHHHHHHHHhcCCEEEEE
Confidence 0000 0000000 000111 1246899999999844 4445555555 467899999
Q ss_pred CCccCC
Q psy10683 338 GTPLQN 343 (429)
Q Consensus 338 gTP~~n 343 (429)
|=|-|-
T Consensus 503 GD~~QL 508 (1102)
T PRK13826 503 GDPEQL 508 (1102)
T ss_pred CCHHHc
Confidence 987654
No 309
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.96 E-value=2.2 Score=47.27 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhc--CCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 186 VRGLNWMISLYEN--GINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 186 ~~~v~~l~~~~~~--~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
..-+..++..+.+ ..+.+|.-++|.|||..+-+++..+.
T Consensus 179 ~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 179 DEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3346666665543 34678999999999999888776554
No 310
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.92 E-value=3.4 Score=39.93 Aligned_cols=123 Identities=20% Similarity=0.327 Sum_probs=69.3
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCcc
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWD 282 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d 282 (429)
++.--.|.|||.+.--++.++.. ...++++.+-..-..--.++++-|.....+-++.+......
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~---~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~Dp------------- 206 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQ---QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADP------------- 206 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHH---CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCc-------------
Confidence 45788999999877666666654 24456666655555445556666654444444443211100
Q ss_pred EEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc---------cCCcEEEEe--CCccCCCHHH
Q psy10683 283 VCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF---------KTTNRLLLT--GTPLQNNLHE 347 (429)
Q Consensus 283 vvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l---------~~~~r~~lT--gTP~~n~~~d 347 (429)
.-.-|+.+ ..-...++|+|++|=|-|+.|... ++.-+.++ .+++.++|. ||-=||.+..
T Consensus 207 -AaVafDAi----~~Akar~~DvvliDTAGRLhnk~n-LM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 207 -AAVAFDAI----QAAKARGIDVVLIDTAGRLHNKKN-LMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred -HHHHHHHH----HHHHHcCCCEEEEeCcccccCchh-HHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 00122322 223445789999999999987543 33333333 345555554 7777776653
No 311
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.85 E-value=7.6 Score=36.73 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=68.7
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEec----cchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhh
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP----KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDV 275 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P----~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~ 275 (429)
....+....|+|||.....+...+.. ....+.+|.- ...+.||....... ++
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~~--~~------------------- 131 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTI--GF------------------- 131 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHHhhhc--Cc-------------------
Confidence 34567788999999887777665533 1234555543 24566776443321 11
Q ss_pred cCCCCccEEE-cchHHHHHHhhhhhc-cCceEEEecCcccccCchhHHHHHH---HhccC-CcEEEEeCCccCCCHHHHH
Q psy10683 276 MMPGEWDVCI-TSYEMCIRERGVFKK-FNWRYLVIDEAHRIKNEKSKLSEIV---REFKT-TNRLLLTGTPLQNNLHELW 349 (429)
Q Consensus 276 ~~~~~~dvvi-tty~~l~~~~~~l~~-~~~~~vIiDEaH~~kn~~s~~~~~~---~~l~~-~~r~~lTgTP~~n~~~dl~ 349 (429)
+++. .+.+.+......+.. ..+++||||-+=+.......+.... ..... ...++|++|--.+...+..
T Consensus 132 ------~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 132 ------EVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred ------eEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 1111 112222222223322 3578999999977643333222222 22222 2356788998777777777
Q ss_pred HHHhhhCC
Q psy10683 350 ALLNFLLP 357 (429)
Q Consensus 350 ~ll~fl~p 357 (429)
..++-+.+
T Consensus 206 ~~f~~~~~ 213 (270)
T PRK06731 206 TNFKDIHI 213 (270)
T ss_pred HHhCCCCC
Confidence 76655433
No 312
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=89.79 E-value=0.58 Score=46.08 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=22.1
Q ss_pred eEEEecCcccccCchhHHHHHHHhccCCcEEEEeCC
Q psy10683 304 RYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGT 339 (429)
Q Consensus 304 ~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgT 339 (429)
.+++|||.|++.. +++-..+-.+.....+++-||
T Consensus 106 tiLflDEIHRfnK--~QQD~lLp~vE~G~iilIGAT 139 (436)
T COG2256 106 TILFLDEIHRFNK--AQQDALLPHVENGTIILIGAT 139 (436)
T ss_pred eEEEEehhhhcCh--hhhhhhhhhhcCCeEEEEecc
Confidence 4788999999843 555555555555555555555
No 313
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.78 E-value=8.3 Score=40.00 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=23.0
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
..+....|.|||..+..++..+.. ....+.+.+|.
T Consensus 353 IaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLId 387 (559)
T PRK12727 353 IALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVT 387 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEe
Confidence 355788999999998887766544 22233455554
No 314
>KOG0740|consensus
Probab=89.78 E-value=2.1 Score=42.88 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=34.7
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKW 252 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~ 252 (429)
+-+|+-+.|.|||+.+.+++..... .+.=|.|.+|...|..|.++.
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~a------tff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESGA------TFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhcc------eEeeccHHHhhhhccChHHHH
Confidence 4477999999999999888754322 345678999999998776553
No 315
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=89.67 E-value=3 Score=37.08 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=55.8
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCcc
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWD 282 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d 282 (429)
++..+|.+|||...|..+ ..+.-...+++|..|..=.. +....+.--.|... .-
T Consensus 8 ~i~gpM~SGKT~eLl~r~---~~~~~~g~~v~vfkp~iD~R---------~~~~~V~Sr~G~~~--------------~A 61 (201)
T COG1435 8 FIYGPMFSGKTEELLRRA---RRYKEAGMKVLVFKPAIDTR---------YGVGKVSSRIGLSS--------------EA 61 (201)
T ss_pred EEEccCcCcchHHHHHHH---HHHHHcCCeEEEEecccccc---------cccceeeeccCCcc--------------cc
Confidence 457889999998655444 34344466788887764111 11111111111111 11
Q ss_pred EEEcchHHHHHHhhhhhc-cCceEEEecCcccccCchhHHHHHHHhccC--CcEEEEeCC
Q psy10683 283 VCITSYEMCIRERGVFKK-FNWRYLVIDEAHRIKNEKSKLSEIVREFKT--TNRLLLTGT 339 (429)
Q Consensus 283 vvitty~~l~~~~~~l~~-~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~--~~r~~lTgT 339 (429)
++|-+-..+......... ...++|.|||||-+.. .+...+..+.. ..++++.|.
T Consensus 62 ~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 62 VVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred eecCChHHHHHHHHhcccCCCcCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 333333333333333222 2267999999999854 44455555533 456666664
No 316
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.60 E-value=2.5 Score=46.73 Aligned_cols=27 Identities=33% Similarity=0.306 Sum_probs=21.8
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
..+.+|..++|.|||..+-+++..+..
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999888766543
No 317
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=89.48 E-value=2.7 Score=37.14 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=36.7
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhc-------ccCCCeEEEeccchHHHHHHHHHhhc
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYR-------NIAGPHIVIVPKSTLLNWMNEFKKWC 253 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~-------~~~~~~LIV~P~~ll~qW~~e~~~~~ 253 (429)
+.-++++.+.|.|||..++.++..+.... ....++|+|....-..+..+.+....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 44478899999999999999887776421 24568888887766667666666554
No 318
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=89.45 E-value=9.8 Score=34.71 Aligned_cols=53 Identities=21% Similarity=0.396 Sum_probs=29.9
Q ss_pred CceEEEecCcccccCchhH---HHHHHHhc-cCCcEEEEeC-C-ccC--CCHHHHHHHHhh
Q psy10683 302 NWRYLVIDEAHRIKNEKSK---LSEIVREF-KTTNRLLLTG-T-PLQ--NNLHELWALLNF 354 (429)
Q Consensus 302 ~~~~vIiDEaH~~kn~~s~---~~~~~~~l-~~~~r~~lTg-T-P~~--n~~~dl~~ll~f 354 (429)
..+++|||..|.+.+.... +...+..+ ....++++|+ . |-. +-..+|.+-+..
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~ 157 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW 157 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh
Confidence 5689999999999875322 22233333 4455677666 3 322 224456555543
No 319
>PRK06904 replicative DNA helicase; Validated
Probab=89.33 E-value=6.2 Score=40.56 Aligned_cols=123 Identities=12% Similarity=0.012 Sum_probs=65.9
Q ss_pred HHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEE-EeC-C--hhh
Q psy10683 192 MISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAIC-LIG-D--QDA 267 (429)
Q Consensus 192 l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~-~~g-~--~~~ 267 (429)
+...+..|.=.|++.-+|+|||.-++.++...... ...++++++...-..++...+-....++.... ..| . ...
T Consensus 214 ~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e 291 (472)
T PRK06904 214 KTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQD 291 (472)
T ss_pred HHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHHHHhhCCCCHHHhccCCCCCHHH
Confidence 33334444456889999999999998887655431 25688999888777777766543332221111 122 1 111
Q ss_pred HHHHHHhhcCC-CCccEEE-----cchHHHHHHhhhhhc--cCceEEEecCcccccC
Q psy10683 268 RNAMIRDVMMP-GEWDVCI-----TSYEMCIRERGVFKK--FNWRYLVIDEAHRIKN 316 (429)
Q Consensus 268 ~~~~~~~~~~~-~~~dvvi-----tty~~l~~~~~~l~~--~~~~~vIiDEaH~~kn 316 (429)
...+....... ...++.| .|.+.++.....+.. ...++||||=-|.+..
T Consensus 292 ~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 292 WAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 11111111011 1122444 234445444433322 2478999999888853
No 320
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.32 E-value=3.2 Score=45.23 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=21.9
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
..+.+|.-++|.|||..+-+++..+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 346899999999999998888766644
No 321
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=89.14 E-value=0.62 Score=48.40 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=76.1
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccch-----HHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcC
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKST-----LLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMM 277 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~l-----l~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (429)
+.--+=.-|||...+.+|+.+.. .-..=.+..++-.-- ...-...+.+|+|.-.+....++.-. ...+
T Consensus 206 VFLVPRRHGKTWf~VpiIsllL~-s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~----~s~p-- 278 (668)
T PHA03372 206 VFLVPRRHGKTWFIIPIISFLLK-NIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVIS----IDHR-- 278 (668)
T ss_pred EEEecccCCceehHHHHHHHHHH-hhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEE----EecC--
Confidence 33445677999999888887765 222223455553322 22334446789987554322111000 0000
Q ss_pred CCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCC-------c----cCCCHH
Q psy10683 278 PGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGT-------P----LQNNLH 346 (429)
Q Consensus 278 ~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgT-------P----~~n~~~ 346 (429)
..+.-++..| ..+.+.++...|+++++||||-++...-...--+..-.....|.+|.| . +.|...
T Consensus 279 g~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~Nsg~~sTSfL~~Lk~~~~ 354 (668)
T PHA03372 279 GAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISSTNTTNDATCFLTKLNNSPF 354 (668)
T ss_pred CCcceeeehh----hccCccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCCCCCCccchHHHhccCchh
Confidence 0111122222 123456778899999999999997532222212222255556667654 2 234555
Q ss_pred HHHHHHhhhCCCCC
Q psy10683 347 ELWALLNFLLPDIF 360 (429)
Q Consensus 347 dl~~ll~fl~p~~~ 360 (429)
++.+.++|+.++..
T Consensus 355 ~~lnVVsYvC~~H~ 368 (668)
T PHA03372 355 DMLNVVSYVCEEHL 368 (668)
T ss_pred hheeeEEEEchhhh
Confidence 66666666666543
No 322
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=88.98 E-value=1.9 Score=44.59 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=21.3
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
..+.+|.-++|+|||..+-+++..+..
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 346788999999999998888766543
No 323
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.83 E-value=9.4 Score=37.36 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCC--C-eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--N-GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~-~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...++.+......+. + -++..+.|.|||..+..++..+..
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4555555555555554 2 367999999999999888877654
No 324
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=88.63 E-value=6.2 Score=40.05 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=24.3
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
.+++..+|.|||.++..++.++... ..++++|+
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~~---g~kV~lV~ 130 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKK---GLKVGLVA 130 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEec
Confidence 4668899999999998888777642 23555554
No 325
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=2.9 Score=41.54 Aligned_cols=87 Identities=10% Similarity=0.126 Sum_probs=63.9
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCcc
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWD 282 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d 282 (429)
++.-++|.||+...+-+++.+.. .+++|.|+-..-..||+-...+..-. ..+
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~----~~~vLYVsGEES~~QiklRA~RL~~~------------------------~~~ 148 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAK----RGKVLYVSGEESLQQIKLRADRLGLP------------------------TNN 148 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHh----cCcEEEEeCCcCHHHHHHHHHHhCCC------------------------ccc
Confidence 56899999999988888877765 23899999998899998777765311 123
Q ss_pred EEEcchHHHHHHhhhhhccCceEEEecCcccccCc
Q psy10683 283 VCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNE 317 (429)
Q Consensus 283 vvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~ 317 (429)
+.+.....+-.-...+...+++++|||-.|.+-++
T Consensus 149 l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 149 LYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred eEEehhcCHHHHHHHHHhcCCCEEEEeccceeecc
Confidence 55555555545555666788999999999998543
No 326
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.62 E-value=5.8 Score=39.71 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=34.2
Q ss_pred CceEEEecCcccccCchhHHHH---HHHhc-cCCcEEEEeC--CccCCC--HHHHHHHHhh
Q psy10683 302 NWRYLVIDEAHRIKNEKSKLSE---IVREF-KTTNRLLLTG--TPLQNN--LHELWALLNF 354 (429)
Q Consensus 302 ~~~~vIiDEaH~~kn~~s~~~~---~~~~l-~~~~r~~lTg--TP~~n~--~~dl~~ll~f 354 (429)
.-++++||..|.+.+.....-. ....+ .....+++|+ +|-.-+ ..+|.+=+.+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~ 235 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW 235 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc
Confidence 4578999999999776433333 33333 3344899999 675443 3577776665
No 327
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=88.44 E-value=5.3 Score=42.18 Aligned_cols=99 Identities=13% Similarity=0.219 Sum_probs=53.9
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCc
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEW 281 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 281 (429)
.+|....|+|||-.+.++...+... .....++.+....++..+...+...
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~-~~g~~V~Yitaeef~~el~~al~~~----------------------------- 366 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRL-YPGTRVRYVSSEEFTNEFINSIRDG----------------------------- 366 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHHHHHHHHHHhc-----------------------------
Confidence 5678999999999888887766541 1223344444334444333332110
Q ss_pred cEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhH---HHHHHHhc-cCCcEEEEeCCc
Q psy10683 282 DVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSK---LSEIVREF-KTTNRLLLTGTP 340 (429)
Q Consensus 282 dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~---~~~~~~~l-~~~~r~~lTgTP 340 (429)
.++.+.+ .+. ..+++|||+.|.+.+.... +...+..+ .....+++|+.-
T Consensus 367 -----~~~~f~~---~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 367 -----KGDSFRR---RYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred -----cHHHHHH---Hhh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 0111111 111 3579999999999764432 33444444 334557777763
No 328
>PRK09165 replicative DNA helicase; Provisional
Probab=88.32 E-value=6 Score=40.98 Aligned_cols=119 Identities=12% Similarity=0.022 Sum_probs=62.1
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcc------------cCCCeEEEeccchHHHHHHHHHhhcCCCceEE-EeCC
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRN------------IAGPHIVIVPKSTLLNWMNEFKKWCPTLRAIC-LIGD 264 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~------------~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~-~~g~ 264 (429)
.|.-.+++..+|+|||..++.++........ ...+++++....-..+....+.....++.... ..|.
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~~~ 295 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGK 295 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCC
Confidence 3334688999999999999888766543211 24577888776666666555433322221111 1121
Q ss_pred --hhhHHHHHHhhcCCCCccEEEc-----chHHHHHHhhhh-hccCceEEEecCcccccC
Q psy10683 265 --QDARNAMIRDVMMPGEWDVCIT-----SYEMCIRERGVF-KKFNWRYLVIDEAHRIKN 316 (429)
Q Consensus 265 --~~~~~~~~~~~~~~~~~dvvit-----ty~~l~~~~~~l-~~~~~~~vIiDEaH~~kn 316 (429)
......+..........++.|. |.+.+......+ .....++||||=.|.+..
T Consensus 296 l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 296 ISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIRG 355 (497)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhccC
Confidence 1111111111111122334432 334444333333 234678999999998753
No 329
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=88.06 E-value=4.2 Score=36.20 Aligned_cols=145 Identities=14% Similarity=0.094 Sum_probs=73.4
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHH-HHHH--HhhcCCCceEEEeCCh-hhHHHHHHh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNW-MNEF--KKWCPTLRAICLIGDQ-DARNAMIRD 274 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW-~~e~--~~~~~~~~~~~~~g~~-~~~~~~~~~ 274 (429)
....++....|-|||-.+++++..... ...+++||= .+-..| ..|. -+.++.+.... .|.. ... .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g---~G~~V~ivQ--FlKg~~~~GE~~~l~~l~~v~~~~-~g~~~~~~-----~ 90 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG---HGKKVGVVQ--FIKGAWSTGERNLLEFGGGVEFHV-MGTGFTWE-----T 90 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH---CCCeEEEEE--EecCCCccCHHHHHhcCCCcEEEE-CCCCCccc-----C
Confidence 344567889999999999988765544 345666652 111112 1222 12223222221 1111 000 0
Q ss_pred hcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccC----chhHHHHHHHhccCCcEEEEeCCccCCCHHHHHH
Q psy10683 275 VMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKN----EKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWA 350 (429)
Q Consensus 275 ~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn----~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ 350 (429)
....-+ .-.--+.+..-...+..-.+++||+||.-..-+ +...+...+..-+..--++|||-=.+..+.|+..
T Consensus 91 --~~~~e~-~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 91 --QDRERD-IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred --CCcHHH-HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 000000 000011222223445567899999999977543 2233444554445555799999976666666666
Q ss_pred HHhhhCC
Q psy10683 351 LLNFLLP 357 (429)
Q Consensus 351 ll~fl~p 357 (429)
++.-+.+
T Consensus 168 lVTEm~~ 174 (191)
T PRK05986 168 LVTEMRP 174 (191)
T ss_pred hheeccc
Confidence 5554443
No 330
>KOG0737|consensus
Probab=88.04 E-value=1.8 Score=42.19 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=33.5
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhc
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWC 253 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~ 253 (429)
...|.+|..++|+|||+.|-++... ....++=|--.++...|..|-.+.+
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Ake------aga~fInv~~s~lt~KWfgE~eKlv 175 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKE------AGANFINVSVSNLTSKWFGEAQKLV 175 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHH------cCCCcceeeccccchhhHHHHHHHH
Confidence 3456678999999999998777632 1223444445566778887766643
No 331
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=87.98 E-value=7.9 Score=33.55 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=19.2
Q ss_pred EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
++....|.|||..+..++..+..
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 56788999999999888877665
No 332
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.98 E-value=17 Score=37.24 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCC--C-eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--N-GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~-~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+.++...+..+. + -++..+.|+|||..+..++..+..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 6677777777776654 3 367899999999999999887754
No 333
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=87.75 E-value=2.4 Score=40.82 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.1
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHY 226 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~ 226 (429)
-++..+.|.|||..+.+++..+...
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 4678889999999999999887653
No 334
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=87.56 E-value=5.4 Score=40.80 Aligned_cols=47 Identities=9% Similarity=0.110 Sum_probs=34.5
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKK 251 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~ 251 (429)
.++.-++|.|||..++.++..+... .+++|.|.......|......+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcCCHHHHHHHHHH
Confidence 4779999999999999888766542 3578888877666666554444
No 335
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.55 E-value=7.9 Score=39.00 Aligned_cols=57 Identities=18% Similarity=0.143 Sum_probs=35.5
Q ss_pred ccCceEEEecCcccccCchhHHHHHHHhc--------cCCcEEEEeCCccCCCHHHHHHHHhhhCC
Q psy10683 300 KFNWRYLVIDEAHRIKNEKSKLSEIVREF--------KTTNRLLLTGTPLQNNLHELWALLNFLLP 357 (429)
Q Consensus 300 ~~~~~~vIiDEaH~~kn~~s~~~~~~~~l--------~~~~r~~lTgTP~~n~~~dl~~ll~fl~p 357 (429)
...+++||||=+-+....... ...+..+ .....++|++|-=++++.+....+..+.+
T Consensus 297 ~~~~D~VLIDTaGr~~rd~~~-l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~ 361 (432)
T PRK12724 297 RDGSELILIDTAGYSHRNLEQ-LERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNY 361 (432)
T ss_pred hCCCCEEEEeCCCCCccCHHH-HHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCC
Confidence 356789999987765332222 2222222 22456889999877777777776665544
No 336
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=87.48 E-value=5.5 Score=42.38 Aligned_cols=149 Identities=15% Similarity=0.203 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH-HHHHHHHH---------hh
Q psy10683 183 DYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL-LNWMNEFK---------KW 252 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll-~qW~~e~~---------~~ 252 (429)
|+=.+-|+.+...+.+....+.++ =|.|||..+..++.++.... ...++|.+|..-. ..-.+.+. .|
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 444556677777777766655554 89999998876666655422 3457777886332 22222222 45
Q ss_pred cCCCc-eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhcc-C
Q psy10683 253 CPTLR-AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFK-T 330 (429)
Q Consensus 253 ~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~-~ 330 (429)
+|... +....|....-.-........+.-.+... .+..+..+...++++|+|||+.+.. ..+...+--+. .
T Consensus 249 fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~-----Ars~~s~RG~~~DLLIVDEAAfI~~--~~l~aIlP~l~~~ 321 (752)
T PHA03333 249 FPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFL-----ASSPNAARGQNPDLVIVDEAAFVNP--GALLSVLPLMAVK 321 (752)
T ss_pred cCCCceEEEeeCCeeEEEEecCcccccCcceeEEe-----cccCCCcCCCCCCEEEEECcccCCH--HHHHHHHHHHccC
Confidence 55432 22222211100000000000000011111 1223445556789999999999965 33333333332 4
Q ss_pred CcEEEEeCCcc
Q psy10683 331 TNRLLLTGTPL 341 (429)
Q Consensus 331 ~~r~~lTgTP~ 341 (429)
..++.+..+|.
T Consensus 322 ~~k~IiISS~~ 332 (752)
T PHA03333 322 GTKQIHISSPV 332 (752)
T ss_pred CCceEEEeCCC
Confidence 55666666664
No 337
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=87.43 E-value=3.6 Score=41.92 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=20.0
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.+|..+.|+|||-.+-++...+..
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~ 167 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRE 167 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 577889999999998888877654
No 338
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=87.38 E-value=12 Score=35.05 Aligned_cols=49 Identities=16% Similarity=-0.004 Sum_probs=32.2
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~ 249 (429)
+.-.+++..+|.|||..++.++..+... ...+++++.-..-..+....+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEcccCHHHHHHHH
Confidence 4456889999999999999887765432 134677776544334443333
No 339
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.35 E-value=4.9 Score=35.52 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.3
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
-++..+.|.|||..+..++..+..
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 467899999999999999887754
No 340
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=87.20 E-value=0.98 Score=41.34 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=26.7
Q ss_pred CceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccCCCHH
Q psy10683 302 NWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLH 346 (429)
Q Consensus 302 ~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~ 346 (429)
..+.+||||++.+.. ..+.- +..+.....+.+-|=|.|-...
T Consensus 62 ~~~~liiDE~~~~~~--g~l~~-l~~~~~~~~~~l~GDp~Q~~~~ 103 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPP--GYLLL-LLSLSPAKNVILFGDPLQIPYI 103 (234)
T ss_pred cCCEEEEeccccCCh--HHHHH-HHhhccCcceEEEECchhccCC
Confidence 467999999999743 22222 4444444567777888875443
No 341
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=87.18 E-value=2.7 Score=41.85 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=21.4
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 197 ENGINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
-+|+.+++..+.|.|||..+-.+...+..
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 35667888888999999877766655544
No 342
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=87.18 E-value=1.8 Score=40.47 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=18.7
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHHHH
Q psy10683 197 ENGINGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~~~ 222 (429)
.+|+.+++..+.|.|||..+-.++..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45677888888999999765444433
No 343
>PRK08760 replicative DNA helicase; Provisional
Probab=87.04 E-value=7.7 Score=39.93 Aligned_cols=53 Identities=15% Similarity=-0.001 Sum_probs=39.4
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhh
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKW 252 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~ 252 (429)
.|.=.+++..+|.|||..++.++...... ...+++++....-..++...+...
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~--~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIK--SKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHh--cCCceEEEeccCCHHHHHHHHHHh
Confidence 33345889999999999999988765431 245788888887778888776544
No 344
>CHL00176 ftsH cell division protein; Validated
Probab=86.87 E-value=7.9 Score=41.38 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=18.8
Q ss_pred CCeEeecCCCCCHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~ 222 (429)
.+.+|.-++|+|||..+-+++..
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35688999999999998777653
No 345
>CHL00206 ycf2 Ycf2; Provisional
Probab=86.84 E-value=2.6 Score=49.67 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=29.3
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNW 245 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW 245 (429)
+|.+|..++|+|||..|=+++... .-|.+-|....++..|
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcc
Confidence 456779999999999998887543 2366666666777665
No 346
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=86.80 E-value=4.3 Score=41.85 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhcCC------CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCe-EEEeccchHHH---HHHHHHhh
Q psy10683 183 DYQVRGLNWMISLYENGI------NGILADEMGLGKTLQTISLLGYMKHYRNIAGPH-IVIVPKSTLLN---WMNEFKKW 252 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~------~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~-LIV~P~~ll~q---W~~e~~~~ 252 (429)
|+|...+..+... .+.. .+++.-.=|-|||..+.+++.+.....+..++- +++++. ..| =.+++..+
T Consensus 1 PwQ~fi~~~i~G~-~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~--~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGW-RKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANT--RDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhce-EcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCC--HHHHHHHHHHHHHH
Confidence 5777766665543 2221 367778899999998877766554433444443 344443 233 12333333
Q ss_pred c---CCCceEEEeCChhhHHHHHHhhcCCCCccEEEc----chHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHH
Q psy10683 253 C---PTLRAICLIGDQDARNAMIRDVMMPGEWDVCIT----SYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIV 325 (429)
Q Consensus 253 ~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvit----ty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~ 325 (429)
+ |.+....-. ..... ....|... .+..+.++.+.....+..++|+||+|..++ ...+.++
T Consensus 78 i~~~~~l~~~~~~-------~~~~~----~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~--~~~~~~l 144 (477)
T PF03354_consen 78 IEASPELRKRKKP-------KIIKS----NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKD--DELYDAL 144 (477)
T ss_pred HHhChhhccchhh-------hhhhh----hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCC--HHHHHHH
Confidence 3 222110000 00000 00011111 111123445566777899999999999976 3344444
Q ss_pred H
Q psy10683 326 R 326 (429)
Q Consensus 326 ~ 326 (429)
.
T Consensus 145 ~ 145 (477)
T PF03354_consen 145 E 145 (477)
T ss_pred H
Confidence 4
No 347
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=86.69 E-value=1.2 Score=39.20 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=23.6
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK 239 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~ 239 (429)
++..+|++|||...+..+..+.. ...+++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~---~~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEI---AGKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHh---CCCeEEEEEec
Confidence 45678999999988877755533 34567777675
No 348
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=86.55 E-value=1.2 Score=45.83 Aligned_cols=170 Identities=13% Similarity=0.130 Sum_probs=91.0
Q ss_pred CCChHHHHHHHHHHHHHHhcCCC------eEeecCCCCCHHHHHHHHHHH--HhhhcccCCCeEEEeccc-hHHHHHHHH
Q psy10683 179 GEMRDYQVRGLNWMISLYENGIN------GILADEMGLGKTLQTISLLGY--MKHYRNIAGPHIVIVPKS-TLLNWMNEF 249 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~------~ilad~~GlGKT~~~i~~~~~--l~~~~~~~~~~LIV~P~~-ll~qW~~e~ 249 (429)
..|-|||...+.-+.-.+.++.+ +++..+=|-|||..+.+++.+ +.. ......++|++|+- ...+=.+++
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~-~~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLN-WRSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhh-hhcCCcEEEEeccHHHHHHhhHHH
Confidence 47889999999888866665544 578888999999877655544 333 24455667777763 223333444
Q ss_pred HhhcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcc------hHHHHHHhhhhhccCceEEEecCcccccCchhHHHH
Q psy10683 250 KKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITS------YEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSE 323 (429)
Q Consensus 250 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitt------y~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~ 323 (429)
+..+-..+ +-+. ........+.|+. -..+..+.+.....+..++|+||-|...++......
T Consensus 139 r~mv~~~~--------~l~~-----~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~~~~ 205 (546)
T COG4626 139 RDMVKRDD--------DLRD-----LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDMYSE 205 (546)
T ss_pred HHHHHhCc--------chhh-----hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHHHHH
Confidence 33331111 0000 0000000111111 111234456677778999999999999886533344
Q ss_pred HHHhccC--Cc-EEEEe--CCccCCCHHHHHHHHhhhCCCCCCC
Q psy10683 324 IVREFKT--TN-RLLLT--GTPLQNNLHELWALLNFLLPDIFSS 362 (429)
Q Consensus 324 ~~~~l~~--~~-r~~lT--gTP~~n~~~dl~~ll~fl~p~~~~~ 362 (429)
+...+.+ .. .+..| |-|...-..+.+....=+..+-..+
T Consensus 206 ~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k~vl~g~~~d 249 (546)
T COG4626 206 AKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDVLDGKIKD 249 (546)
T ss_pred HHhhhccCcCceEEEEecCCCCCccHHHHHHHHHHHHhcCCcCC
Confidence 4444422 22 33333 3455444555555554444443333
No 349
>PRK11054 helD DNA helicase IV; Provisional
Probab=86.51 E-value=1.7 Score=46.69 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=47.6
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc-ccCCCeEEEeccchHHHHHHH-HHh
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR-NIAGPHIVIVPKSTLLNWMNE-FKK 251 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~-~~~~~~LIV~P~~ll~qW~~e-~~~ 251 (429)
..|.+.|.++|.. ...+.++....|+|||.+.++-++++.... .....+|+++...-..+...+ +..
T Consensus 195 ~~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4688999999852 223456666799999999999998887533 234578888887666665544 443
No 350
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=86.46 E-value=9.8 Score=38.47 Aligned_cols=51 Identities=10% Similarity=0.082 Sum_probs=34.8
Q ss_pred HhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHH
Q psy10683 196 YENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 196 ~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e 248 (429)
+..|.-.+++..+|+|||..++.++..+.. ....++++++...--.+....
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~--~~g~~v~~fSlEm~~~~l~~R 241 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVAL--REGKPVLFFSLEMSAEQLGER 241 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHH
Confidence 334444588999999999999998866542 125678888755545554443
No 351
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=86.40 E-value=4.7 Score=35.32 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=39.4
Q ss_pred hhhhhccCceEEEecCcccccCc----hhHHHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhh
Q psy10683 295 RGVFKKFNWRYLVIDEAHRIKNE----KSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFL 355 (429)
Q Consensus 295 ~~~l~~~~~~~vIiDEaH~~kn~----~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl 355 (429)
...+..-.+++||+||.-..-+. .......+..-+..--++|||.-.+..+.|+..++.-+
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm 154 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEM 154 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeee
Confidence 34455678999999999765332 23444555554556689999997666666655555444
No 352
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=86.39 E-value=4.9 Score=43.82 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=20.9
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
..+.+|.-++|.|||..+-++...+.
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999877775443
No 353
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=86.23 E-value=1.6 Score=45.03 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|...+..|...+..++ ++ ++..+=|.|||..+=-++..+..
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC 64 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNC 64 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcC
Confidence 5666666666666655 33 66889999999988767666654
No 354
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=86.18 E-value=14 Score=35.87 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=23.6
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
.+.-..|.|||.++..++..+.. ..+.++++.
T Consensus 118 ~lvGpnGsGKTTt~~kLA~~l~~---~g~~V~Li~ 149 (318)
T PRK10416 118 LVVGVNGVGKTTTIGKLAHKYKA---QGKKVLLAA 149 (318)
T ss_pred EEECCCCCcHHHHHHHHHHHHHh---cCCeEEEEe
Confidence 45679999999999888877654 245666665
No 355
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=86.17 E-value=2.5 Score=46.02 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=28.9
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMN 247 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~ 247 (429)
.+.+|.-++|+|||..+-+++..+ ..+++.|-++.++..|..
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~vG 529 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKWVG 529 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhcccC
Confidence 345778999999999987776543 235666666666665543
No 356
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=86.00 E-value=1.7 Score=43.52 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=27.1
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNW 245 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW 245 (429)
+.+.+|..++|+|||..+-+++..+ ..+++-+.+..++..|
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGSEFVQKY 219 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHHHHh
Confidence 3467889999999999987776533 2345555555444444
No 357
>PRK05748 replicative DNA helicase; Provisional
Probab=85.86 E-value=8.8 Score=39.17 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=36.3
Q ss_pred HhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHH
Q psy10683 196 YENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249 (429)
Q Consensus 196 ~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~ 249 (429)
+..|.-.+++..+|.|||.-++.++..... ....+++++....--.+....+
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~--~~g~~v~~fSlEms~~~l~~R~ 251 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVAT--KTDKNVAIFSLEMGAESLVMRM 251 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHH--hCCCeEEEEeCCCCHHHHHHHH
Confidence 334444688999999999999998876542 1245788887666666655554
No 358
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.72 E-value=4.2 Score=45.08 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=26.9
Q ss_pred HHHHHHHHHhc--CCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 188 GLNWMISLYEN--GINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 188 ~v~~l~~~~~~--~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
-++.++..+.. ..+.+|..++|.|||..+-+++..+.
T Consensus 186 ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 46666654433 34689999999999999988776554
No 359
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=85.59 E-value=4.9 Score=37.28 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=26.5
Q ss_pred ecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE--eccchH
Q psy10683 205 ADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI--VPKSTL 242 (429)
Q Consensus 205 ad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV--~P~~ll 242 (429)
.--=|.|||..+.+++..+... ..++|+| +|.+++
T Consensus 8 s~kGGvG~TTltAnLA~aL~~~---G~~VlaID~dpqN~L 44 (243)
T PF06564_consen 8 SPKGGVGKTTLTANLAWALARL---GESVLAIDLDPQNLL 44 (243)
T ss_pred cCCCCCCHHHHHHHHHHHHHHC---CCcEEEEeCCcHHHH
Confidence 3445899999999999888663 4467777 688777
No 360
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=85.49 E-value=9.1 Score=44.97 Aligned_cols=133 Identities=14% Similarity=0.204 Sum_probs=71.3
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc-ccCCCeEEEeccchHHHHHHHHHhhcCCCce
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR-NIAGPHIVIVPKSTLLNWMNEFKKWCPTLRA 258 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~-~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~ 258 (429)
.|-+-|++|+..++. ...+-.++.-..|+|||.+.-+++..+.... .....++.++|..--.. ++.. .
T Consensus 835 ~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~---~L~e-~----- 903 (1623)
T PRK14712 835 KLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG---EMRS-A----- 903 (1623)
T ss_pred ccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHH---HHHH-h-----
Confidence 688999999986653 2234578889999999998766655443321 12234556778653332 2221 0
Q ss_pred EEEeCChhh-HHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhcc-CCcEEEE
Q psy10683 259 ICLIGDQDA-RNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFK-TTNRLLL 336 (429)
Q Consensus 259 ~~~~g~~~~-~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~-~~~r~~l 336 (429)
|.... -..++... + .. .....-.....+++|||||-++.+ ....+.+..+. ...|++|
T Consensus 904 ----Gi~A~TIasfL~~~------~-------~~-~~~~~~~~~~~~llIVDEASMV~~--~~m~~ll~~~~~~garvVL 963 (1623)
T PRK14712 904 ----GVDAQTLASFLHDT------Q-------LQ-QRSGETPDFSNTLFLLDESSMVGN--TDMARAYALIAAGGGRAVA 963 (1623)
T ss_pred ----CchHhhHHHHhccc------c-------ch-hhcccCCCCCCcEEEEEccccccH--HHHHHHHHhhhhCCCEEEE
Confidence 11100 00101000 0 00 000001112357999999999865 34444555444 3578999
Q ss_pred eCCccCC
Q psy10683 337 TGTPLQN 343 (429)
Q Consensus 337 TgTP~~n 343 (429)
.|=+-|.
T Consensus 964 VGD~~QL 970 (1623)
T PRK14712 964 SGDTDQL 970 (1623)
T ss_pred Ecchhhc
Confidence 8876554
No 361
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=85.47 E-value=12 Score=40.63 Aligned_cols=135 Identities=15% Similarity=0.208 Sum_probs=75.9
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH----HHHHHHHHhhcCCCceEEEeC--ChhhHHHH
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL----LNWMNEFKKWCPTLRAICLIG--DQDARNAM 271 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll----~qW~~e~~~~~~~~~~~~~~g--~~~~~~~~ 271 (429)
...|.|.-+-+|=|||+++..-+ ++.. -..+.+.||....-+ ..|...+-.|.. +.+.+... ....+...
T Consensus 92 lh~g~iaEM~TGEGKTL~atlp~-ylna--L~gkgVhvVTvNdYLA~RDae~m~~l~~~LG-lsvG~~~~~m~~~ek~~a 167 (822)
T COG0653 92 LHLGDIAEMRTGEGKTLVATLPA-YLNA--LAGKGVHVVTVNDYLARRDAEWMGPLYEFLG-LSVGVILAGMSPEEKRAA 167 (822)
T ss_pred hcCCceeeeecCCchHHHHHHHH-HHHh--cCCCCcEEeeehHHhhhhCHHHHHHHHHHcC-CceeeccCCCChHHHHHH
Confidence 35688999999999999885433 3322 224456666666444 339999988883 34333332 22333322
Q ss_pred HHhhcCCCCccEEEcchHHH-----HHH----hhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccC
Q psy10683 272 IRDVMMPGEWDVCITSYEMC-----IRE----RGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 342 (429)
Q Consensus 272 ~~~~~~~~~~dvvitty~~l-----~~~----~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~ 342 (429)
. ..||.-+|-.-+ +.+ ....-..+..+.|+||+..+-- -.++-.+.+|| |..
T Consensus 168 Y-------~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILI-----------DEARtPLiISG-~~~ 228 (822)
T COG0653 168 Y-------ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILI-----------DEARTPLIISG-PAE 228 (822)
T ss_pred H-------hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheee-----------eccccceeeec-ccc
Confidence 2 234544443222 111 1111122677899999977522 14556689999 988
Q ss_pred CCHHHHHHHHhhh
Q psy10683 343 NNLHELWALLNFL 355 (429)
Q Consensus 343 n~~~dl~~ll~fl 355 (429)
.+...+..+.+|+
T Consensus 229 ~~~~~Y~~~~~~v 241 (822)
T COG0653 229 DSSELYKKVDDLV 241 (822)
T ss_pred cCchHHHHHHHHH
Confidence 8744444444443
No 362
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=85.38 E-value=1.9 Score=43.16 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=25.7
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN 244 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q 244 (429)
.+.+|.-++|+|||..+-+++..+. .+++.+....+...
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~~~l~~~ 204 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVGSELVQK 204 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHhC------CCEEEeehHHHhHh
Confidence 3567899999999999887765432 24555544444433
No 363
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=85.34 E-value=2.6 Score=39.70 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 183 DYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
|+...-+..+......+...+|..++|+|||..+.++...+ ..+++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 45556666666777778888999999999999998877532 34666663
No 364
>PRK08840 replicative DNA helicase; Provisional
Probab=85.31 E-value=12 Score=38.38 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=37.3
Q ss_pred HhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHH
Q psy10683 196 YENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFK 250 (429)
Q Consensus 196 ~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~ 250 (429)
+..|.=.+++.-+|+|||.-++.++..... ....+++++....-..++...+-
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~--~~~~~v~~fSlEMs~~ql~~Rll 266 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAM--DQDKPVLIFSLEMPAEQLMMRML 266 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHH--hCCCeEEEEeccCCHHHHHHHHH
Confidence 344444688999999999999888766543 12567888887766677665543
No 365
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=85.31 E-value=4.2 Score=38.07 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHH
Q psy10683 184 YQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~ 249 (429)
.+...+.-....+..+.+.++.-++|.|||..++|+...+.. . ...++++.-+.++.++...+
T Consensus 90 ~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~-~--g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 90 KALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLK-A--GISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH-c--CCeEEEEEHHHHHHHHHHHH
Confidence 344444444445567778899999999999999999988763 2 34556665445555555443
No 366
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=85.20 E-value=8 Score=35.53 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=28.4
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK 239 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~ 239 (429)
|.-.+++..+|+|||..++.++...... ...++++++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~--~g~~vly~s~E 51 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKK--QGKPVLFFSLE 51 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCceEEEeCC
Confidence 3345889999999999999887665542 14577888733
No 367
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=85.09 E-value=13 Score=34.22 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=34.1
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhh---------hcccCCCeEEEe---ccchHHHHHHHHHhh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKH---------YRNIAGPHIVIV---PKSTLLNWMNEFKKW 252 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~---------~~~~~~~~LIV~---P~~ll~qW~~e~~~~ 252 (429)
-++++.+.|+|||..++.++..+.. .....+++|+++ |...+.+-...+...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~ 66 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQH 66 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhh
Confidence 3789999999999999988876542 112456778887 444444444444433
No 368
>PRK08506 replicative DNA helicase; Provisional
Probab=85.07 E-value=11 Score=38.87 Aligned_cols=50 Identities=14% Similarity=0.019 Sum_probs=36.1
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHH
Q psy10683 197 ENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~ 249 (429)
..|.-.+++..+|.|||..++.++..... ...+++++....-..+....+
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~~---~g~~V~~fSlEMs~~ql~~Rl 239 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKALN---QDKGVAFFSLEMPAEQLMLRM 239 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHHh---cCCcEEEEeCcCCHHHHHHHH
Confidence 33444588999999999999998876543 245788888776666655554
No 369
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=85.07 E-value=11 Score=32.49 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=64.5
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCC
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGE 280 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 280 (429)
+....-|.|||..++.++..+... ..++|+|- |......|. |. +..
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~---g~~vllvD~D~q~~~~~~~-----~~---------~~~--------------- 51 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKL---GYKVGLLDADIYGPSIPKM-----WR---------GPM--------------- 51 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHc---CCcEEEEeCCCCCCCchHH-----Hh---------Ccc---------------
Confidence 455678999999999999887662 45677773 222111111 00 000
Q ss_pred ccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCC
Q psy10683 281 WDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLP 357 (429)
Q Consensus 281 ~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p 357 (429)
....+......+..-.+++||+|=...+.+ ....+..+.....+++..+|-..++.+...++.++..
T Consensus 52 ------~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~----~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~ 118 (169)
T cd02037 52 ------KMGAIKQFLTDVDWGELDYLVIDMPPGTGD----EHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK 118 (169)
T ss_pred ------hHHHHHHHHHHhhcCCCCEEEEeCCCCCcH----HHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh
Confidence 001111111222224788999999887532 1111222234466666678888889888888888764
No 370
>KOG0952|consensus
Probab=85.05 E-value=0.92 Score=49.67 Aligned_cols=108 Identities=23% Similarity=0.254 Sum_probs=68.0
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH-----HHHHHHHHhhcCCCceEEEeCChhhHHHHHHhh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL-----LNWMNEFKKWCPTLRAICLIGDQDARNAMIRDV 275 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll-----~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~ 275 (429)
+.++.+++|.|||+.+-..+..... ....+++++|+|...+ ..|...+.. |+.+++-..|..... .
T Consensus 945 ~~~~g~ptgsgkt~~ae~a~~~~~~-~~p~~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd------~ 1015 (1230)
T KOG0952|consen 945 NFLLGAPTGSGKTVVAELAIFRALS-YYPGSKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPD------V 1015 (1230)
T ss_pred hhhhcCCccCcchhHHHHHHHHHhc-cCCCccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCC------h
Confidence 4567899999999987555444433 3445788999998443 337654433 467777776654332 1
Q ss_pred cCCCCccEEEcchHHHHHHhhhhhcc----CceEEEecCcccccCc
Q psy10683 276 MMPGEWDVCITSYEMCIRERGVFKKF----NWRYLVIDEAHRIKNE 317 (429)
Q Consensus 276 ~~~~~~dvvitty~~l~~~~~~l~~~----~~~~vIiDEaH~~kn~ 317 (429)
......+++|||.+..-......... ....+|+||.|.++..
T Consensus 1016 ~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1016 KAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred hheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 22245679999998764332211111 3456999999998764
No 371
>KOG1001|consensus
Probab=84.93 E-value=0.4 Score=51.09 Aligned_cols=39 Identities=41% Similarity=0.434 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhHh-cCcccchhhcccccchhhhhhccC
Q psy10683 38 DYQVRGLNWMISLYE-NGINGILADEMGLGKTLQTISLLG 76 (429)
Q Consensus 38 ~~q~~g~~~~~~~~~-~~~~~~l~~~~~~~k~~~~~~~~~ 76 (429)
.+|..+..|+..... ...|||+||+||+|||+++|+++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l 174 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALIL 174 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHH
Confidence 444444444444322 235899999999999999999864
No 372
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=84.92 E-value=1.5 Score=47.28 Aligned_cols=54 Identities=11% Similarity=0.008 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhh-cccCCCeEEEecc
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHY-RNIAGPHIVIVPK 239 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~-~~~~~~~LIV~P~ 239 (429)
.|.+-|.++|.+ ..+..++....|+|||.+.+.-++++... ...+..+|+|+.+
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT 56 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT 56 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEech
Confidence 477899999863 24456777789999999999999988764 2344567777764
No 373
>PRK10867 signal recognition particle protein; Provisional
Probab=84.90 E-value=13 Score=37.79 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=29.3
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc----chHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK----STLLNWMN 247 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~----~ll~qW~~ 247 (429)
.+++...|.|||.++..++.++... ...++++|+-. ....||..
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~--~G~kV~lV~~D~~R~aa~eQL~~ 150 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK--KKKKVLLVAADVYRPAAIEQLKT 150 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh--cCCcEEEEEccccchHHHHHHHH
Confidence 3568899999999999988877653 13456666522 34455543
No 374
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=84.90 E-value=11 Score=34.60 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHHHHH
Q psy10683 207 EMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNWMNE 248 (429)
Q Consensus 207 ~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW~~e 248 (429)
-=|.|||..++.+...+... ..+++||- |...+..|...
T Consensus 10 KGGvGKTT~a~nLA~~la~~---G~~VlliD~DpQ~s~~~w~~~ 50 (231)
T PRK13849 10 KGGAGKTTALMGLCAALASD---GKRVALFEADENRPLTRWKEN 50 (231)
T ss_pred CCCccHHHHHHHHHHHHHhC---CCcEEEEeCCCCCCHHHHHHh
Confidence 34899999999998887652 34666663 77777888753
No 375
>PRK07952 DNA replication protein DnaC; Validated
Probab=84.88 E-value=5.3 Score=37.18 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhc---C-CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHh
Q psy10683 183 DYQVRGLNWMISLYEN---G-INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKK 251 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~---~-~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~ 251 (429)
+.|..++..+.....+ + .+.+|...+|+|||..+.+++..+... ...++++ + +..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~i-t---~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR---GKSVLII-T---VADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEE-E---HHHHHHHHHH
Confidence 4466666665543322 2 345788999999999999999887652 2344444 2 4556655543
No 376
>PRK07004 replicative DNA helicase; Provisional
Probab=84.87 E-value=6.9 Score=40.11 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=61.2
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceE-EEeCC--hhhHHHHHH
Q psy10683 197 ENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAI-CLIGD--QDARNAMIR 273 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~-~~~g~--~~~~~~~~~ 273 (429)
..|.-.+++..+|+|||.-++.++..... ....+++++....--.+....+-.....+... +..|. ......+..
T Consensus 211 ~~g~liviaarpg~GKT~~al~ia~~~a~--~~~~~v~~fSlEM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~ 288 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAFSMNIGEYVAV--EYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTH 288 (460)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHHHH--HcCCeEEEEeCCCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHH
Confidence 33444588999999999999988866543 22457888877766666555543222111111 11121 111111111
Q ss_pred hhcCCCCccEEEc-----chHHHHHHhhhhhc-c-CceEEEecCccccc
Q psy10683 274 DVMMPGEWDVCIT-----SYEMCIRERGVFKK-F-NWRYLVIDEAHRIK 315 (429)
Q Consensus 274 ~~~~~~~~dvvit-----ty~~l~~~~~~l~~-~-~~~~vIiDEaH~~k 315 (429)
.........+.|. +...++.....+.. . ..++||||=-|.+.
T Consensus 289 a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 289 AVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 1111122334442 33444444333432 2 36899999888885
No 377
>PRK04132 replication factor C small subunit; Provisional
Probab=84.86 E-value=4.4 Score=44.52 Aligned_cols=48 Identities=15% Similarity=0.336 Sum_probs=28.8
Q ss_pred CceEEEecCcccccCch-hHHHHHHHhccCCcEEEEeCCccCCCHHHHH
Q psy10683 302 NWRYLVIDEAHRIKNEK-SKLSEIVREFKTTNRLLLTGTPLQNNLHELW 349 (429)
Q Consensus 302 ~~~~vIiDEaH~~kn~~-s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~ 349 (429)
.+.+|||||+|++.... ..+.+.+.......+++++.++...-+.-+.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr 678 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 678 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh
Confidence 47899999999994311 1122233333466788888877654433333
No 378
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=84.70 E-value=6.1 Score=42.85 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=17.9
Q ss_pred CeEeecCCCCCHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~ 222 (429)
+.+|.-++|+|||..+-++...
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999888776643
No 379
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=84.35 E-value=4.1 Score=40.34 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=19.6
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
..+.+|..+.|+|||..+-+++..+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 3456889999999999988776543
No 380
>PHA00673 acetyltransferase domain containing protein
Probab=84.35 E-value=1.9 Score=36.99 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=37.2
Q ss_pred ceEEEecCcccccCchhHHHHHHHhc---cCCcEEEEeCCccCCCHH
Q psy10683 303 WRYLVIDEAHRIKNEKSKLSEIVREF---KTTNRLLLTGTPLQNNLH 346 (429)
Q Consensus 303 ~~~vIiDEaH~~kn~~s~~~~~~~~l---~~~~r~~lTgTP~~n~~~ 346 (429)
.+.|++|+.|+=++-.+.+.+.+... ....+|.+||||.+|+++
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 56799999999988888887776655 778999999999999875
No 381
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=84.33 E-value=14 Score=37.46 Aligned_cols=50 Identities=14% Similarity=0.016 Sum_probs=33.8
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHH
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~ 249 (429)
.|.-.+++..+|.|||..++.++...... ...+++++....--.+-...+
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--~g~~vl~~SlEm~~~~i~~R~ 243 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIK--EGKPVAFFSLEMSAEQLAMRM 243 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh--CCCeEEEEeCcCCHHHHHHHH
Confidence 33345889999999999999888765431 235788887665554444333
No 382
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=84.20 E-value=12 Score=44.62 Aligned_cols=133 Identities=14% Similarity=0.214 Sum_probs=72.0
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhccc-CCCeEEEeccchHHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNI-AGPHIVIVPKSTLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~-~~~~LIV~P~~ll~qW~~e~~~~~~~~~ 257 (429)
..|-+-|++|+..++. ....-.++.-..|+|||.+.-+++..+...... ...++.++|..--.. ++.. .
T Consensus 966 ~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk---~L~e-~---- 1035 (1747)
T PRK13709 966 EGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG---EMRS-A---- 1035 (1747)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH---HHHh-c----
Confidence 3688999999987653 123456788899999998877666555432111 234566678753322 2221 1
Q ss_pred eEEEeCChh-hHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhcc-CCcEEE
Q psy10683 258 AICLIGDQD-ARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFK-TTNRLL 335 (429)
Q Consensus 258 ~~~~~g~~~-~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~-~~~r~~ 335 (429)
|... .-..++... +..... .......-+++||||+-++.+ ......+..+. ...|++
T Consensus 1036 -----Gi~A~TI~s~L~~~-------------~~~~~~-~~~~~~~~~llIVDEaSMv~~--~~m~~Ll~~~~~~garvV 1094 (1747)
T PRK13709 1036 -----GVDAQTLASFLHDT-------------QLQQRS-GETPDFSNTLFLLDESSMVGN--TDMARAYALIAAGGGRAV 1094 (1747)
T ss_pred -----CcchhhHHHHhccc-------------cccccc-ccCCCCCCcEEEEEccccccH--HHHHHHHHhhhcCCCEEE
Confidence 1110 000001000 000000 001112447999999999855 34455555554 357899
Q ss_pred EeCCccC
Q psy10683 336 LTGTPLQ 342 (429)
Q Consensus 336 lTgTP~~ 342 (429)
|.|=+-|
T Consensus 1095 LVGD~~Q 1101 (1747)
T PRK13709 1095 SSGDTDQ 1101 (1747)
T ss_pred EecchHh
Confidence 9886654
No 383
>KOG0780|consensus
Probab=84.15 E-value=3.8 Score=40.31 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=36.6
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEE
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICL 261 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~ 261 (429)
.++-=.|.|||.+..-++.++.. ...++.+||-..-..--.++++.+.-..++-.|
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kk---kG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y 160 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKK---KGYKVALVCADTFRAGAFDQLKQNATKARVPFY 160 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHh---cCCceeEEeecccccchHHHHHHHhHhhCCeeE
Confidence 45777899999888777776644 355677888766655555666666544444333
No 384
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=84.13 E-value=18 Score=31.29 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=38.3
Q ss_pred hhhhhccCceEEEecCcccccC----chhHHHHHHHhccCCcEEEEeCCccCCCHHHHHHHHh
Q psy10683 295 RGVFKKFNWRYLVIDEAHRIKN----EKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLN 353 (429)
Q Consensus 295 ~~~l~~~~~~~vIiDEaH~~kn----~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~ 353 (429)
...+....+++||+||.=..-+ +.......+..-....-++|||--.+..+.|+..++.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VT 150 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVT 150 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceee
Confidence 3445566899999999977622 2234445555555566799999876666666555443
No 385
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.12 E-value=40 Score=35.97 Aligned_cols=40 Identities=13% Similarity=0.043 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCC--C-eEeecCCCCCHHHHHHHHHHHHh
Q psy10683 185 QVRGLNWMISLYENGI--N-GILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~-~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
|...+..+.....++. + -|+..+.|.|||..+..++..+.
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5556666666665553 3 36789999999998877776664
No 386
>PRK09183 transposase/IS protein; Provisional
Probab=84.08 E-value=12 Score=35.17 Aligned_cols=29 Identities=31% Similarity=0.205 Sum_probs=22.8
Q ss_pred HhcCCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 196 YENGINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 196 ~~~~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
...+.+.++..++|+|||..+.++...+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34567788899999999999988865443
No 387
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=83.88 E-value=11 Score=37.02 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHHHhcCCCe-EeecCCCCCHHHHHHHHHHHHhhh
Q psy10683 181 MRDYQVRGLNWMISLYENGING-ILADEMGLGKTLQTISLLGYMKHY 226 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~-ilad~~GlGKT~~~i~~~~~l~~~ 226 (429)
++|+|....+.+...-.+-..+ ++..+.|.||+..+..++..+.-.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4577777777776642222245 468899999999999999887653
No 388
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=83.52 E-value=3.2 Score=44.64 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc-ccCCCeEEEe-ccchHHHHHHHHHhhc
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR-NIAGPHIVIV-PKSTLLNWMNEFKKWC 253 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~-~~~~~~LIV~-P~~ll~qW~~e~~~~~ 253 (429)
|.|-|.++|.+ ..+..++....|+|||.+.+.-+.++.... .....+|+|+ |...-.+-.+.+.+.+
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889888852 244667778899999999999998887532 3445567765 4455555555555443
No 389
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=83.41 E-value=2.7 Score=37.10 Aligned_cols=39 Identities=28% Similarity=0.247 Sum_probs=26.2
Q ss_pred HhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 196 YENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 196 ~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
..++.|.++..++|.|||..+.+++..+... ..+++.+.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~---g~~v~f~~ 82 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK---GYSVLFIT 82 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEE
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC---CcceeEee
Confidence 3456677889999999999999998776652 33455554
No 390
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=83.33 E-value=2.1 Score=42.19 Aligned_cols=45 Identities=20% Similarity=0.018 Sum_probs=32.6
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKK 251 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~ 251 (429)
+.+|.-+.|+|||+++-+++..+-. ++++|....++..|..|=++
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~------~~i~vsa~eL~sk~vGEsEk 194 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGI------EPIVMSAGELESENAGEPGK 194 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCC------CeEEEEHHHhhcCcCCcHHH
Confidence 4567899999999999888765432 45666677788877765444
No 391
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=83.24 E-value=27 Score=33.06 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=23.7
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
.+....|.|||.++..++.++... ..++++|.
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~ 107 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAA 107 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEe
Confidence 456899999999998888776542 34666665
No 392
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=83.20 E-value=12 Score=34.30 Aligned_cols=39 Identities=10% Similarity=0.023 Sum_probs=27.6
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS 240 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ 240 (429)
+.-.++..+.|+|||..+..++..+... ..+.+.|+...
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~e~ 62 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVSTQL 62 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeCCC
Confidence 3446789999999999988887765431 34667776443
No 393
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=82.96 E-value=4.6 Score=40.36 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=20.8
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 197 ENGINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
.+|+.+.+..+.|.|||..+-.+...+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 3566788889999999987666555443
No 394
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=82.95 E-value=3.6 Score=40.00 Aligned_cols=133 Identities=12% Similarity=0.151 Sum_probs=72.4
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe-ccchHHHHHHHHHhhcCCC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV-PKSTLLNWMNEFKKWCPTL 256 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~-P~~ll~qW~~e~~~~~~~~ 256 (429)
.+.+.+.|.+.+. .....+.+.+++-.+|+|||...-+++..+... ....++++|= |..+ . ++..
T Consensus 126 ~g~~~~~~~~~L~---~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~-~~~~rivtiEd~~El--------~--~~~~ 191 (323)
T PRK13833 126 SKIMTEAQASVIR---SAIDSRLNIVISGGTGSGKTTLANAVIAEIVAS-APEDRLVILEDTAEI--------Q--CAAE 191 (323)
T ss_pred cCCCCHHHHHHHH---HHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcC-CCCceEEEecCCccc--------c--cCCC
Confidence 3455566665544 445567778899999999999888887766431 1122333331 2221 1 1222
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEE
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLL 336 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~l 336 (429)
+.+.+... . -.++..+.+ ...+.++++||+.|.- . .....++..+.+-+.-.+
T Consensus 192 n~v~l~~~--------------~-----~~~~~~lv~---~aLR~~PD~IivGEiR---g--~ea~~~l~a~~tGh~G~i 244 (323)
T PRK13833 192 NAVALHTS--------------D-----TVDMARLLK---STMRLRPDRIIVGEVR---D--GAALTLLKAWNTGHPGGV 244 (323)
T ss_pred CEEEeccC--------------C-----CcCHHHHHH---HHhCCCCCEEEEeecC---C--HHHHHHHHHHcCCCCceE
Confidence 22222110 0 123433322 2335789999999983 2 234456777666664333
Q ss_pred eCCccCCCHHHHHHHH
Q psy10683 337 TGTPLQNNLHELWALL 352 (429)
Q Consensus 337 TgTP~~n~~~dl~~ll 352 (429)
+|---|+..+.+.-|
T Consensus 245 -tTiHA~s~~~a~~Rl 259 (323)
T PRK13833 245 -TTIHSNTAMSALRRL 259 (323)
T ss_pred -EEECCCCHHHHHHHH
Confidence 566677777765544
No 395
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=82.54 E-value=18 Score=34.63 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=33.8
Q ss_pred CChHHHHHHHHHHHHHHhcCC--CeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 180 EMRDYQVRGLNWMISLYENGI--NGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~--~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.|...|..++..+.....+++ .++|... |.||+..+..++..+..
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC 48 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFC 48 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcC
Confidence 356678888888888877765 4666554 68999999888877765
No 396
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=82.32 E-value=30 Score=35.01 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=24.0
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEec
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P 238 (429)
.++-..|.|||.++..++.++... ..++++|+-
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~---G~kV~lV~~ 136 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRK---GFKPCLVCA 136 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEcC
Confidence 467889999999998888776542 335666653
No 397
>KOG0739|consensus
Probab=82.26 E-value=1.8 Score=41.07 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=34.5
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKW 252 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~ 252 (429)
+.+|..++|+||+..+-+++... ...+.-|..+-|++.|..|-++.
T Consensus 168 giLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHHHHHhccHHHH
Confidence 34668999999999887776422 24566677888999999886664
No 398
>PHA02542 41 41 helicase; Provisional
Probab=82.11 E-value=12 Score=38.38 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=32.4
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~ 249 (429)
=.+++..+|.|||..++.++..... ...+++++.-.--..++...+
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~---~g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQ---QGYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHh---cCCcEEEEeccCCHHHHHHHH
Confidence 3588999999999999999876643 256788886444444444443
No 399
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.08 E-value=36 Score=33.55 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCC---CeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 184 YQVRGLNWMISLYENGI---NGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~~---~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
.|..++..+.....++. .-++..+.|+|||..+-+++..+.
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 21 GQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35566666666666554 346789999999998888766554
No 400
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=82.05 E-value=16 Score=37.02 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=24.4
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
.+++...|.|||.++..++.++.... ..++++|+
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~--g~kV~lV~ 135 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQ--GKKVLLVA 135 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC--CCeEEEEe
Confidence 46789999999999998888764311 33556554
No 401
>KOG0733|consensus
Probab=82.00 E-value=74 Score=33.69 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=31.8
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCC-eEEEeccchHHHHHHHHHh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGP-HIVIVPKSTLLNWMNEFKK 251 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~-~LIV~P~~ll~qW~~e~~~ 251 (429)
..|.+|+.++|+|||+.|-|++.. .+. ++=|--+.|++.|+.|=++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE-------ag~NFisVKGPELlNkYVGESEr 591 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE-------AGANFISVKGPELLNKYVGESER 591 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh-------ccCceEeecCHHHHHHHhhhHHH
Confidence 345678999999999999777642 222 3444456778888877544
No 402
>PRK08006 replicative DNA helicase; Provisional
Probab=81.97 E-value=21 Score=36.74 Aligned_cols=53 Identities=15% Similarity=0.058 Sum_probs=37.3
Q ss_pred HhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHH
Q psy10683 196 YENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFK 250 (429)
Q Consensus 196 ~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~ 250 (429)
+..|.=.+++.-+|+|||.-++.++...... ...+++++....-..++...+-
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSlEM~~~ql~~Rll 273 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSLEMPGEQIMMRML 273 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEeccCCHHHHHHHHH
Confidence 3334445889999999999999888665431 2457888877766666665544
No 403
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=81.93 E-value=3.8 Score=44.57 Aligned_cols=67 Identities=10% Similarity=0.048 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc-ccCCCeEEEeccc-hHHHHHHHHHhh
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR-NIAGPHIVIVPKS-TLLNWMNEFKKW 252 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~-~~~~~~LIV~P~~-ll~qW~~e~~~~ 252 (429)
.|.|-|+++|.. ..+..++....|+|||.+.+.-++++.... -.+..+|+|+.+. .-..-.+.+.+.
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 4 GLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred ccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 578999999862 234567788899999999999998887642 3455677777653 333333334443
No 404
>PRK05636 replicative DNA helicase; Provisional
Probab=81.76 E-value=15 Score=38.04 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=58.8
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceE-EEeCC--hhhHHHHHHhhcCC
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAI-CLIGD--QDARNAMIRDVMMP 278 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~-~~~g~--~~~~~~~~~~~~~~ 278 (429)
.+++..+|.|||..++.++...... ...+++++....-..++...+-.....+... +..|. ......+.......
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~--~g~~v~~fSlEMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l 345 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIK--HNKASVIFSLEMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLGKI 345 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEeeCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 4789999999999998887654431 2457788876665566554432221111110 01111 11111111111112
Q ss_pred CCccEEEc-----chHHHHHHhhhh-hccCceEEEecCcccccC
Q psy10683 279 GEWDVCIT-----SYEMCIRERGVF-KKFNWRYLVIDEAHRIKN 316 (429)
Q Consensus 279 ~~~dvvit-----ty~~l~~~~~~l-~~~~~~~vIiDEaH~~kn 316 (429)
....++|. |.+.++.....+ .....++||||=-|.+.+
T Consensus 346 ~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~ 389 (505)
T PRK05636 346 AQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSS 389 (505)
T ss_pred hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCC
Confidence 23344442 333444443333 234678999999998853
No 405
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=81.13 E-value=15 Score=33.62 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=31.3
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKK 251 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~ 251 (429)
.++..++|+|||..+..++..... ...+++.|.=..-..+..+.+..
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~~~~~~~~~~~ 74 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENTSKSYLKQMES 74 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCCHHHHHHHHHH
Confidence 467899999999999988754332 25577777644444444444444
No 406
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=81.11 E-value=3.9 Score=42.52 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=42.0
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhh---cccCCCeEEEeccchHHHHHH
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHY---RNIAGPHIVIVPKSTLLNWMN 247 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~---~~~~~~~LIV~P~~ll~qW~~ 247 (429)
+.+-|-+.++ ..++.-.|+....|+|||.+|+.=+++|... .-..+++||+.|+.++.....
T Consensus 213 IQkEQneIIR-----~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 213 IQKEQNEIIR-----FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred hhHhHHHHHh-----ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 3455555553 2233335668899999999998877776442 234578999999988766554
No 407
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=81.10 E-value=4.7 Score=43.87 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhh-cccCCCeEEEecc
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHY-RNIAGPHIVIVPK 239 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~-~~~~~~~LIV~P~ 239 (429)
.|.|-|+++|.+ ..+..++....|+|||.+.+.-++++... .-.+..+|+|+-+
T Consensus 9 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT 63 (721)
T PRK11773 9 SLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFT 63 (721)
T ss_pred hcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeecc
Confidence 588999999862 23456777779999999999999888763 2344567777764
No 408
>PRK06321 replicative DNA helicase; Provisional
Probab=81.03 E-value=20 Score=36.86 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=61.8
Q ss_pred HhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEE-EeCC--hhhHHHHH
Q psy10683 196 YENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAIC-LIGD--QDARNAMI 272 (429)
Q Consensus 196 ~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~-~~g~--~~~~~~~~ 272 (429)
+..|.=.|++.-+|+|||.-++.++..... ....+++++....--.++...+-.....+...- ..|. ......+.
T Consensus 223 l~~G~LiiiaarPgmGKTafal~ia~~~a~--~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~ 300 (472)
T PRK06321 223 FSPSNLMILAARPAMGKTALALNIAENFCF--QNRLPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIV 300 (472)
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHH--hcCCeEEEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHH
Confidence 333334588999999999999987765542 124578888777666666655432221111100 1121 11111111
Q ss_pred HhhcCCCCccEEEc-----chHHHHHHhhhh-hccCceEEEecCccccc
Q psy10683 273 RDVMMPGEWDVCIT-----SYEMCIRERGVF-KKFNWRYLVIDEAHRIK 315 (429)
Q Consensus 273 ~~~~~~~~~dvvit-----ty~~l~~~~~~l-~~~~~~~vIiDEaH~~k 315 (429)
.......+..++|- |-+.++.....+ .....++||||=-|.+.
T Consensus 301 ~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 301 SVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcC
Confidence 11111122334443 334444443333 23457899999988875
No 409
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=81.00 E-value=10 Score=32.85 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHH--hcCCCeEeecCCCCCHHHHHHHHHHHHhhh
Q psy10683 182 RDYQVRGLNWMISLY--ENGINGILADEMGLGKTLQTISLLGYMKHY 226 (429)
Q Consensus 182 r~~Q~~~v~~l~~~~--~~~~~~ilad~~GlGKT~~~i~~~~~l~~~ 226 (429)
|..|.+.+.-++... ..+...++.-+.|+|||...-.++..+...
T Consensus 5 R~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 5 REEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 344555544433211 122346788999999999988888777663
No 410
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=80.98 E-value=15 Score=44.61 Aligned_cols=131 Identities=19% Similarity=0.201 Sum_probs=69.7
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc-ccCCCeEEEeccchHHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR-NIAGPHIVIVPKSTLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~-~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~ 257 (429)
..|-+-|+.|+..++. ..+.-.++.-..|+|||.+..+++..+.... .....++.++|.+--. .+++.-
T Consensus 1018 ~~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa---~~L~~~----- 1087 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAV---GELKSA----- 1087 (1960)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHH---HHHHhc-----
Confidence 4789999999986643 2233457788999999998865544433221 1233455667874332 333220
Q ss_pred eEEEeCChh-hHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-cCCcEEE
Q psy10683 258 AICLIGDQD-ARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-KTTNRLL 335 (429)
Q Consensus 258 ~~~~~g~~~-~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~~~~r~~ 335 (429)
|... .-..++.+ + ........ ...-+++|||||-++.+ ....+.+... .+..+++
T Consensus 1088 -----g~~a~Ti~s~l~~------~-------~~~~~~~~---~~~~~v~ivDEasMv~~--~~~~~l~~~~~~~~ak~v 1144 (1960)
T TIGR02760 1088 -----GVQAQTLDSFLTD------I-------SLYRNSGG---DFRNTLFILDESSMVSN--FQLTHATELVQKSGSRAV 1144 (1960)
T ss_pred -----CCchHhHHHHhcC------c-------ccccccCC---CCcccEEEEEccccccH--HHHHHHHHhccCCCCEEE
Confidence 1110 00011100 0 00000000 22457999999999855 3344444443 4557899
Q ss_pred EeCCccC
Q psy10683 336 LTGTPLQ 342 (429)
Q Consensus 336 lTgTP~~ 342 (429)
|.|=+-|
T Consensus 1145 lvGD~~Q 1151 (1960)
T TIGR02760 1145 SLGDIAQ 1151 (1960)
T ss_pred EeCChhh
Confidence 9885533
No 411
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=80.87 E-value=7.9 Score=42.24 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=18.3
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~ 222 (429)
+.+.+|..++|+|||..+-+++..
T Consensus 212 ~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHH
Confidence 345678999999999887666543
No 412
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=80.87 E-value=1.1 Score=38.80 Aligned_cols=43 Identities=28% Similarity=0.394 Sum_probs=33.6
Q ss_pred CcccHHHHHHHHHHHHhHhcC---cccchhhcccccchhhhhhccC
Q psy10683 34 GEMRDYQVRGLNWMISLYENG---INGILADEMGLGKTLQTISLLG 76 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~---~~~~l~~~~~~~k~~~~~~~~~ 76 (429)
..|||||.+.+.=+....... ..+++....|.|||.-.+.++.
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~ 47 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALIL 47 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhh
Confidence 379999999998877766654 6788888999999999886543
No 413
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=80.77 E-value=19 Score=35.09 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHHHhcCCCe-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 181 MRDYQVRGLNWMISLYENGING-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
++|+|.....-+.....+-.++ ++..+.|.|||..+..++..+.-
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcC
Confidence 3577777777766654333344 57899999999999999887754
No 414
>PRK05595 replicative DNA helicase; Provisional
Probab=80.52 E-value=16 Score=37.21 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=35.9
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHH
Q psy10683 197 ENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFK 250 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~ 250 (429)
..|.=.+++..+|.|||..++.++..+... ...+++++....--.+....+-
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~--~g~~vl~fSlEms~~~l~~R~~ 250 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALR--EGKSVAIFSLEMSKEQLAYKLL 250 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHH--cCCcEEEEecCCCHHHHHHHHH
Confidence 334345889999999999999988765321 2457888877666666655543
No 415
>PRK12608 transcription termination factor Rho; Provisional
Probab=80.49 E-value=11 Score=37.47 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 187 RGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 187 ~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
+++..+.. .-+|+++++..+.|.|||..+..++..+..
T Consensus 122 RvID~l~P-iGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 122 RVVDLVAP-IGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred hhhhheee-cCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35544432 246778899999999999988887776654
No 416
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=80.40 E-value=4.7 Score=38.78 Aligned_cols=124 Identities=14% Similarity=0.171 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEEeCChhhHH
Q psy10683 190 NWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARN 269 (429)
Q Consensus 190 ~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~ 269 (429)
.++......+.+.+++-.+|+|||..+-+++..+... ....++++|=.. .|+. .+..+.+.+....
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~-~~~~ri~tiEd~-------~El~--~~~~~~v~~~~~~---- 188 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKN-DPTDRVVIIEDT-------RELQ--CAAPNVVQLRTSD---- 188 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhcc-CCCceEEEECCc-------hhhc--CCCCCEEEEEecC----
Confidence 3444555667788899999999999988887665431 112333333111 1221 1111222221100
Q ss_pred HHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccCCCHHHHH
Q psy10683 270 AMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 349 (429)
Q Consensus 270 ~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~ 349 (429)
. . .++..+.+ ...+.++++||+.|.-- . ....++....+-+.-.+ +|--.++..+..
T Consensus 189 ----------~--~--~~~~~~l~---~aLR~~pD~iivGEiR~---~--ea~~~l~a~~tGh~G~~-tTiHa~~~~~ai 245 (299)
T TIGR02782 189 ----------D--A--ISMTRLLK---ATLRLRPDRIIVGEVRG---G--EALDLLKAWNTGHPGGI-ATIHANNAKAAL 245 (299)
T ss_pred ----------C--C--CCHHHHHH---HHhcCCCCEEEEeccCC---H--HHHHHHHHHHcCCCCeE-EeeccCCHHHHH
Confidence 0 0 04444332 33456899999999832 2 34556666666655222 455566666644
Q ss_pred H
Q psy10683 350 A 350 (429)
Q Consensus 350 ~ 350 (429)
.
T Consensus 246 ~ 246 (299)
T TIGR02782 246 D 246 (299)
T ss_pred H
Confidence 4
No 417
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=80.31 E-value=12 Score=37.59 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=34.6
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEE
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICL 261 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~ 261 (429)
+++-=-|+|||.++.-++.++.. ....+++||-..-..--.++++.......+-+|
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 45777899999999888888876 345566666443333334444444433344333
No 418
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.16 E-value=23 Score=35.80 Aligned_cols=55 Identities=18% Similarity=0.171 Sum_probs=34.1
Q ss_pred CceEEEecCcccccCchhHHHHHHHhc-----cCCcEEEEeCCccCCCHHHHHHHHhhhCC
Q psy10683 302 NWRYLVIDEAHRIKNEKSKLSEIVREF-----KTTNRLLLTGTPLQNNLHELWALLNFLLP 357 (429)
Q Consensus 302 ~~~~vIiDEaH~~kn~~s~~~~~~~~l-----~~~~r~~lTgTP~~n~~~dl~~ll~fl~p 357 (429)
+.+.|+||.+-+..+. ......+..+ .....++|++|--.+.+.+...-+..+..
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 4578999987554332 2233444444 22445789999877777777776665544
No 419
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=79.87 E-value=5.2 Score=41.42 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=18.8
Q ss_pred CCeEeecCCCCCHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~ 222 (429)
.+.+|.-++|+|||..+-+++..
T Consensus 89 ~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999998777643
No 420
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=79.76 E-value=63 Score=32.03 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHHH-hc--CCCeEeecCCCCCHHHHHHHHHHHHhhh
Q psy10683 180 EMRDYQVRGLNWMISLY-EN--GINGILADEMGLGKTLQTISLLGYMKHY 226 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~-~~--~~~~ilad~~GlGKT~~~i~~~~~l~~~ 226 (429)
.-|+-|...+...+.-. .. +.+.++...+|+|||.++--++..+...
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 45667776665444333 22 2357889999999999998887776653
No 421
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=79.66 E-value=76 Score=34.38 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=24.6
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE
Q psy10683 197 ENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI 236 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV 236 (429)
......++.-++|+|||..|-++-... ....+|++.|
T Consensus 397 ~~~~pVLI~GE~GTGK~~lA~~ih~~s---~r~~~~~v~i 433 (686)
T PRK15429 397 QSDSTVLILGETGTGKELIARAIHNLS---GRNNRRMVKM 433 (686)
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHHhc---CCCCCCeEEE
Confidence 344467889999999999776654322 2234576666
No 422
>KOG1133|consensus
Probab=79.44 E-value=1.4 Score=46.24 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=33.9
Q ss_pred CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--h-hccCceEEEecCcccccC
Q psy10683 255 TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--F-KKFNWRYLVIDEAHRIKN 316 (429)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l-~~~~~~~vIiDEaH~~kn 316 (429)
..+...|+++...- ...++|+..|+.+..+... + ....-.+|||||||++-+
T Consensus 308 ~~~~CPYY~SR~av----------p~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlid 362 (821)
T KOG1133|consen 308 ELRGCPYYASRRAV----------PQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLID 362 (821)
T ss_pred hcCCCCchhhhhcc----------ccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHH
Confidence 34555566644321 3568999999999766432 1 123446899999999854
No 423
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=79.42 E-value=16 Score=35.46 Aligned_cols=41 Identities=12% Similarity=0.274 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|..++..+.....+++ .+ ++..+.|.||+..+.+++..+..
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc 52 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLS 52 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6677777777776664 33 66899999999999999988765
No 424
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=79.02 E-value=4.8 Score=33.66 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=20.3
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
.+.-.+|.-++|+|||..+-+++..+-
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 344456789999999998877776653
No 425
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=78.91 E-value=12 Score=34.95 Aligned_cols=114 Identities=12% Similarity=0.079 Sum_probs=59.0
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHH-HHhhcCCCceE-EEeCC--hhhHHHHHHhhc
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE-FKKWCPTLRAI-CLIGD--QDARNAMIRDVM 276 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e-~~~~~~~~~~~-~~~g~--~~~~~~~~~~~~ 276 (429)
=.+++..+|.|||..++.++..+.... ..++++++...--.+.... +.... +.... +..|. ............
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~~vly~SlEm~~~~l~~R~la~~s-~v~~~~i~~g~l~~~e~~~~~~~~~ 97 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNG--GYPVLYFSLEMSEEELAARLLARLS-GVPYNKIRSGDLSDEEFERLQAAAE 97 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--SSEEEEEESSS-HHHHHHHHHHHHH-TSTHHHHHCCGCHHHHHHHHHHHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhh-cchhhhhhccccCHHHHHHHHHHHH
Confidence 368899999999999999988776532 2688888876444443222 22222 11110 00111 111111111111
Q ss_pred CCCCccEEEc-----chHHHHHHhhhhhc--cCceEEEecCcccccCc
Q psy10683 277 MPGEWDVCIT-----SYEMCIRERGVFKK--FNWRYLVIDEAHRIKNE 317 (429)
Q Consensus 277 ~~~~~dvvit-----ty~~l~~~~~~l~~--~~~~~vIiDEaH~~kn~ 317 (429)
......+++. +.+.+......+.. ...++||||=.|.+...
T Consensus 98 ~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 98 KLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 1112223332 33444444333332 56789999999998763
No 426
>KOG1133|consensus
Probab=78.66 E-value=4.1 Score=42.96 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=39.2
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHH-HHHHhh
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISL-LGYMKH 225 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~-~~~l~~ 225 (429)
..+.++-|.+-.+-++..++.|.=||+-.++|+|||+..|+. +.|+..
T Consensus 13 Py~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 13 PYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999999987654 444433
No 427
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=78.59 E-value=7.8 Score=38.76 Aligned_cols=130 Identities=8% Similarity=0.061 Sum_probs=60.4
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc--chHHHHHHHHHhhcCCCceE-EEeCChhhHHHHHHhhcCCC
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK--STLLNWMNEFKKWCPTLRAI-CLIGDQDARNAMIRDVMMPG 279 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~--~ll~qW~~e~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~ 279 (429)
++...-|+|||..++..+............+|++-|. ++-.+=..++....+.+... .+...... . ......
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~----~-~i~~~~ 79 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSS----M-EIKILN 79 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCc----c-EEEecC
Confidence 5566789999998876554433322133455666555 23333333333222211110 00000000 0 000001
Q ss_pred -CccEEEcchHHHHHHhhhhhccC-ceEEEecCcccccCchhHHHHHHHhcc---CCcEEEEeCCccC
Q psy10683 280 -EWDVCITSYEMCIRERGVFKKFN-WRYLVIDEAHRIKNEKSKLSEIVREFK---TTNRLLLTGTPLQ 342 (429)
Q Consensus 280 -~~dvvitty~~l~~~~~~l~~~~-~~~vIiDEaH~~kn~~s~~~~~~~~l~---~~~r~~lTgTP~~ 342 (429)
...|++..-. .+...+.... .+++++|||..+.. .....++..++ +..++.+|.||-.
T Consensus 80 ~g~~i~f~g~~---d~~~~ik~~~~~~~~~idEa~~~~~--~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 80 TGKKFIFKGLN---DKPNKLKSGAGIAIIWFEEASQLTF--EDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred CCeEEEeeccc---CChhHhhCcceeeeehhhhhhhcCH--HHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 1123332221 2223344432 58999999999843 34444444453 2235999999954
No 428
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=78.48 E-value=17 Score=39.61 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=17.5
Q ss_pred EeecCCCCCHHHHHHHHHHHHh
Q psy10683 203 ILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~ 224 (429)
.+....|.|||.++.-++..+.
T Consensus 189 ~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 189 ALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred EEECCCCCcHHHHHHHHHhhHH
Confidence 4689999999988877776553
No 429
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=78.36 E-value=28 Score=34.76 Aligned_cols=45 Identities=16% Similarity=0.103 Sum_probs=29.3
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc----chHHHHHHHHH
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK----STLLNWMNEFK 250 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~----~ll~qW~~e~~ 250 (429)
.++.+.|.|||.++..++..+... ..++.+|+-. ..+.||..-..
T Consensus 210 ~lvGptGvGKTTt~akLA~~l~~~---g~~V~lItaDtyR~gAveQLk~yae 258 (407)
T PRK12726 210 SLIGQTGVGKTTTLVKLGWQLLKQ---NRTVGFITTDTFRSGAVEQFQGYAD 258 (407)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCccCccHHHHHHHHhh
Confidence 567889999999988887765432 3455566532 23677765443
No 430
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=78.34 E-value=15 Score=35.51 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=56.7
Q ss_pred HHhcCCCeEeecCCCCCHHHHHHHHHHHHhh-------hcccCCCeEEEe----ccchHHHHHHHHHhhc-CCCceEEEe
Q psy10683 195 LYENGINGILADEMGLGKTLQTISLLGYMKH-------YRNIAGPHIVIV----PKSTLLNWMNEFKKWC-PTLRAICLI 262 (429)
Q Consensus 195 ~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~-------~~~~~~~~LIV~----P~~ll~qW~~e~~~~~-~~~~~~~~~ 262 (429)
.+..+.+.|++.+-|+|||...|-+...+.. .-...+.+|+|. |..+++....-....- +...+-...
T Consensus 85 ~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~d 164 (402)
T COG3598 85 FFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMD 164 (402)
T ss_pred HhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhhee
Confidence 3455777899999999999987766544432 123456667664 5555555443333322 111111111
Q ss_pred CChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccc
Q psy10683 263 GDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRI 314 (429)
Q Consensus 263 g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~ 314 (429)
-... + . .. ..-|+ |.. ..+++-...+....+++||||-.-.+
T Consensus 165 ltd~-~-----G-aa-~~~d~-l~p-kl~rRfek~~~Q~rp~~vViDp~v~f 206 (402)
T COG3598 165 LTDV-S-----G-AA-DESDV-LSP-KLYRRFEKILEQKRPDFVVIDPFVAF 206 (402)
T ss_pred cccc-c-----c-CC-Ccccc-ccH-HHHHHHHHHHHHhCCCeEEEcchhhh
Confidence 0000 0 0 00 01122 222 34444455566778899999976554
No 431
>CHL00195 ycf46 Ycf46; Provisional
Probab=77.93 E-value=3.8 Score=42.27 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=25.1
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL 242 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll 242 (429)
.|.+|.-++|+|||..+=+++..+ .-+++.+-+..+.
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~l~ 296 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGKLF 296 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHHhc
Confidence 356779999999999987776543 2355655554433
No 432
>KOG0744|consensus
Probab=77.65 E-value=17 Score=35.24 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=31.7
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhc--ccCCCeEE-EeccchHHHHHHHHHh
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYR--NIAGPHIV-IVPKSTLLNWMNEFKK 251 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~--~~~~~~LI-V~P~~ll~qW~~e~~~ 251 (429)
+|-.++|+|||-..-+++..+.-.. ...+..|| |-..++.+.|..|=-+
T Consensus 181 LlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgK 232 (423)
T KOG0744|consen 181 LLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGK 232 (423)
T ss_pred EEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhh
Confidence 5678999999988888876654321 12223344 4455888888877433
No 433
>PRK12377 putative replication protein; Provisional
Probab=77.49 E-value=17 Score=33.86 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=28.7
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN 244 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q 244 (429)
.+.+|..++|+|||-.+.+++..+... ...++++.-..++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~---g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK---GRSVIVVTVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEHHHHHHH
Confidence 356788999999999999999877652 233444443445543
No 434
>KOG0736|consensus
Probab=77.21 E-value=24 Score=38.10 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=18.5
Q ss_pred CeEeecCCCCCHHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l 223 (429)
|.+|..++|+|||+.|-|++...
T Consensus 707 GILLYGPPGTGKTLlAKAVATEc 729 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATEC 729 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhhc
Confidence 45668999999999998887543
No 435
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=77.18 E-value=17 Score=35.06 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 185 QVRGLNWMISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|..++..+...+..+. +. ++..+-|.|||..+..++..+..
T Consensus 9 ~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 9 HENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred cHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 4455555555555544 34 67899999999999998877643
No 436
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=76.48 E-value=6.7 Score=38.84 Aligned_cols=61 Identities=21% Similarity=0.373 Sum_probs=44.4
Q ss_pred CChHHHHHHHHHHHHHHhc--CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHH
Q psy10683 180 EMRDYQVRGLNWMISLYEN--GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLL 243 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~--~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~ 243 (429)
+|-+-|+.++..++..... +....+.-.-|+|||...-++...+.. ....+++++|..+-.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~---~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS---RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc---ccceEEEecchHHHH
Confidence 3667899999998777754 334567889999999988777776544 345677788876543
No 437
>PRK09087 hypothetical protein; Validated
Probab=76.28 E-value=22 Score=32.60 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=30.3
Q ss_pred eEEEecCcccccCchhHHHHHHHhc-cCCcEEEEeCCccCC----CHHHHHHHH
Q psy10683 304 RYLVIDEAHRIKNEKSKLSEIVREF-KTTNRLLLTGTPLQN----NLHELWALL 352 (429)
Q Consensus 304 ~~vIiDEaH~~kn~~s~~~~~~~~l-~~~~r~~lTgTP~~n----~~~dl~~ll 352 (429)
++++||+.|.+..........+..+ .....+++|++--.. ...+|.+-+
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl 142 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRL 142 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHH
Confidence 3799999999854444455555555 446678888872211 235565555
No 438
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=75.85 E-value=4.6 Score=37.98 Aligned_cols=126 Identities=20% Similarity=0.138 Sum_probs=63.6
Q ss_pred HHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe-ccchHHHHHHHHHhhcCCCceEEEeCChhhH
Q psy10683 190 NWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV-PKSTLLNWMNEFKKWCPTLRAICLIGDQDAR 268 (429)
Q Consensus 190 ~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~-P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~ 268 (429)
.+|......+++.+++-++|+|||.+.-+++..+... ...+++|= |..+. .+......+.....
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~---~~~iv~iEd~~E~~----------l~~~~~~~~~~~~~-- 182 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE---DERIVTIEDPPELR----------LPGPNQIQIQTRRD-- 182 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT---TSEEEEEESSS-S------------SCSSEEEEEEETT--
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc---ccceEEecccccee----------ecccceEEEEeecC--
Confidence 3444444556677889999999999998887655442 23444442 22111 11212111111100
Q ss_pred HHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccCCCHHHH
Q psy10683 269 NAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHEL 348 (429)
Q Consensus 269 ~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl 348 (429)
-.+|..+. ....+.++++||++|.-. .....++....+-+...+ +|--.++..+.
T Consensus 183 ----------------~~~~~~~l---~~~LR~~pD~iiigEiR~-----~e~~~~~~a~~tGh~~~~-tT~Ha~s~~~~ 237 (270)
T PF00437_consen 183 ----------------EISYEDLL---KSALRQDPDVIIIGEIRD-----PEAAEAIQAANTGHLGSL-TTLHANSAEDA 237 (270)
T ss_dssp ----------------TBSHHHHH---HHHTTS--SEEEESCE-S-----CHHHHHHHHHHTT-EEEE-EEEE-SSHHHH
T ss_pred ----------------cccHHHHH---HHHhcCCCCcccccccCC-----HhHHHHHHhhccCCceee-eeeecCCHHHH
Confidence 01233322 223446789999999854 234445666677776654 34556667666
Q ss_pred HHHHhhh
Q psy10683 349 WALLNFL 355 (429)
Q Consensus 349 ~~ll~fl 355 (429)
..-+.-+
T Consensus 238 i~Rl~~l 244 (270)
T PF00437_consen 238 IERLADL 244 (270)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544333
No 439
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=75.70 E-value=1.9 Score=37.92 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=21.4
Q ss_pred CceEEEecCcccccCchhHHHHHHHh-ccCCcEEEEeCCc
Q psy10683 302 NWRYLVIDEAHRIKNEKSKLSEIVRE-FKTTNRLLLTGTP 340 (429)
Q Consensus 302 ~~~~vIiDEaH~~kn~~s~~~~~~~~-l~~~~r~~lTgTP 340 (429)
..|++|||||=.+-- . .+.+ +....|+++|.|=
T Consensus 90 ~~DlliVDEAAaIp~--p----~L~~ll~~~~~vv~stTi 123 (177)
T PF05127_consen 90 QADLLIVDEAAAIPL--P----LLKQLLRRFPRVVFSTTI 123 (177)
T ss_dssp --SCEEECTGGGS-H--H----HHHHHHCCSSEEEEEEEB
T ss_pred CCCEEEEechhcCCH--H----HHHHHHhhCCEEEEEeec
Confidence 468999999977622 2 2333 4577789998884
No 440
>PF05729 NACHT: NACHT domain
Probab=75.48 E-value=14 Score=31.22 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=20.6
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhc
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYR 227 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~ 227 (429)
.++..+.|.|||..+..++..+....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcC
Confidence 36778899999999988887776643
No 441
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=75.44 E-value=16 Score=37.22 Aligned_cols=43 Identities=12% Similarity=-0.052 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHh
Q psy10683 208 MGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKK 251 (429)
Q Consensus 208 ~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~ 251 (429)
-|+|||.....-++.+.. .+...+++|-|=. ++-++..+-+.+
T Consensus 185 AGSGKT~~La~Kaa~lh~-knPd~~I~~Tfftk~L~s~~r~lv~~ 228 (660)
T COG3972 185 AGSGKTELLAHKAAELHS-KNPDSRIAFTFFTKILASTMRTLVPE 228 (660)
T ss_pred cCCCchhHHHHHHHHHhc-CCCCceEEEEeehHHHHHHHHHHHHH
Confidence 699999876655555554 6667777877755 444444433333
No 442
>PRK05973 replicative DNA helicase; Provisional
Probab=75.44 E-value=7.3 Score=36.04 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=29.2
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS 240 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ 240 (429)
.|.-.+++..+|+|||..++.++...... ..+++++.-..
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlEe 102 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLEY 102 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEeC
Confidence 34446889999999999999988765432 45777876443
No 443
>KOG0734|consensus
Probab=75.36 E-value=11 Score=38.84 Aligned_cols=87 Identities=21% Similarity=0.289 Sum_probs=50.0
Q ss_pred CCeEeecCCCCCHHHHHHHHH---------------------------HHHhhhcccCCCeEEEecc-------------
Q psy10683 200 INGILADEMGLGKTLQTISLL---------------------------GYMKHYRNIAGPHIVIVPK------------- 239 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~---------------------------~~l~~~~~~~~~~LIV~P~------------- 239 (429)
.|.+|..++|+|||+.|=+++ ..+....+.+-|.+|..-.
T Consensus 338 KGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~ 417 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ 417 (752)
T ss_pred CceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH
Confidence 356789999999999988876 2233334445566665421
Q ss_pred ----chHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcc
Q psy10683 240 ----STLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITS 287 (429)
Q Consensus 240 ----~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitt 287 (429)
-.++|-.-|+.-|-++..++++ |...-...+......++.||+.|+-
T Consensus 418 ~y~kqTlNQLLvEmDGF~qNeGiIvi-gATNfpe~LD~AL~RPGRFD~~v~V 468 (752)
T KOG0734|consen 418 HYAKQTLNQLLVEMDGFKQNEGIIVI-GATNFPEALDKALTRPGRFDRHVTV 468 (752)
T ss_pred HHHHHHHHHHHHHhcCcCcCCceEEE-eccCChhhhhHHhcCCCccceeEec
Confidence 1234444455555555544444 3333333444455667888866543
No 444
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=75.19 E-value=21 Score=36.77 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=18.2
Q ss_pred EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.|.-..|.|||.++..++..+..
T Consensus 260 ~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 260 ALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred EEECCCCccHHHHHHHHHHHHHH
Confidence 46789999999988887776644
No 445
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=74.51 E-value=7.2 Score=38.09 Aligned_cols=37 Identities=19% Similarity=0.054 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 188 GLNWMISLYENGINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 188 ~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
-..|+......+.+.+++-++|+|||...-+++..+.
T Consensus 149 ~~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 149 IKEFLEHAVISKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 3455666667788899999999999988877776553
No 446
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=74.46 E-value=1.1e+02 Score=31.33 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=24.8
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS 240 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ 240 (429)
.....++..+.|+|||..+-++-... ....+|+++|--..
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s---~~~~~~~i~i~c~~ 199 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHS---PRAKAPFIALNMAA 199 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcC---CCCCCCeEeeeCCC
Confidence 34457889999999998765443321 22346766664333
No 447
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=74.35 E-value=5.6 Score=38.01 Aligned_cols=112 Identities=14% Similarity=0.173 Sum_probs=62.2
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-ch-----HHHHHHHHHhhc----CCCceEEEeCChhhHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-ST-----LLNWMNEFKKWC----PTLRAICLIGDQDARNAM 271 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~l-----l~qW~~e~~~~~----~~~~~~~~~g~~~~~~~~ 271 (429)
+++-.++|+||+-..=.++..-.- ......+..|+|. .. ..-|..++..=. |+..++...|+
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI-~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t------- 161 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLI-QPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGT------- 161 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcc-cCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccc-------
Confidence 678899999999544334332221 3445567777776 22 344888775421 11112211111
Q ss_pred HHhhcCCCCccEEEcchHHHHHHhhh-----------hhccCceEEEecCcccccCchhHHHHHHHhc
Q psy10683 272 IRDVMMPGEWDVCITSYEMCIRERGV-----------FKKFNWRYLVIDEAHRIKNEKSKLSEIVREF 328 (429)
Q Consensus 272 ~~~~~~~~~~dvvitty~~l~~~~~~-----------l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l 328 (429)
-..+.|-+||+.+..+.+. -.+..+-.||+|||-.-.......++...++
T Consensus 162 -------~~P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAl 222 (369)
T PF02456_consen 162 -------FRPKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHAL 222 (369)
T ss_pred -------ccccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcC
Confidence 1245788888887665321 1233567899999976433344455554444
No 448
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=74.09 E-value=8.8 Score=37.26 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=69.6
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCce
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRA 258 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~ 258 (429)
+.+.+.|.+.+ ......+.+.+++-.+|+|||..+-+++..+... ....++++|-... |+. ++..+.
T Consensus 131 g~~~~~~~~~L---~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~-~~~~rivtIEd~~-------El~--~~~~~~ 197 (319)
T PRK13894 131 GIMTAAQREAI---IAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQ-DPTERVFIIEDTG-------EIQ--CAAENY 197 (319)
T ss_pred CCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhc-CCCceEEEEcCCC-------ccc--cCCCCE
Confidence 34455665544 4445567788999999999998877777654321 2223334332221 111 111122
Q ss_pred EEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeC
Q psy10683 259 ICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTG 338 (429)
Q Consensus 259 ~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTg 338 (429)
+.+... . + .++..+. ....+..+++||+.|.-. .....++..+.+-+.-.+ +
T Consensus 198 v~~~~~--------------~--~---~~~~~ll---~~aLR~~PD~IivGEiR~-----~Ea~~~l~A~~tGh~G~~-t 249 (319)
T PRK13894 198 VQYHTS--------------I--D---VNMTALL---KTTLRMRPDRILVGEVRG-----PEALDLLMAWNTGHEGGA-A 249 (319)
T ss_pred EEEecC--------------C--C---CCHHHHH---HHHhcCCCCEEEEeccCC-----HHHHHHHHHHHcCCCceE-E
Confidence 221110 0 0 1333332 223457899999999833 234556676666654333 5
Q ss_pred CccCCCHHHHHH
Q psy10683 339 TPLQNNLHELWA 350 (429)
Q Consensus 339 TP~~n~~~dl~~ 350 (429)
|--.|+..+...
T Consensus 250 TiHa~s~~~ai~ 261 (319)
T PRK13894 250 TLHANNAKAGLD 261 (319)
T ss_pred EECCCCHHHHHH
Confidence 556677766544
No 449
>PRK08939 primosomal protein DnaI; Reviewed
Probab=74.05 E-value=15 Score=35.36 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.7
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.|-+|..++|+|||..+.+++..+..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35567889999999999999887764
No 450
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=74.02 E-value=50 Score=33.47 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=70.3
Q ss_pred HHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEE-EeCC--hhhH
Q psy10683 192 MISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAIC-LIGD--QDAR 268 (429)
Q Consensus 192 l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~-~~g~--~~~~ 268 (429)
+...+..+.--|+|.-+|.|||.-++.++..+.. ...+|+.|..=..--.||...+-.......... -.|. ....
T Consensus 189 ~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~--~~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~ 266 (435)
T COG0305 189 ITSGFRPGDLIIVAARPGMGKTALALNIALNAAA--DGRKPVAIFSLEMSEEQLVMRLLSSESGIESSKLRTGRLSDDEW 266 (435)
T ss_pred HhcCCccCCEEEEccCCCCChHHHHHHHHHHHHH--hcCCCeEEEEccCCHHHHHHHhhccccccchhccccccccHHHH
Confidence 3344445555688999999999999999887766 345567777777777888876654433322211 1121 1111
Q ss_pred HHHHHhhcCCCCccEEEc-----chHHHHHHhhhh-hccCceEEEecCcccccCch
Q psy10683 269 NAMIRDVMMPGEWDVCIT-----SYEMCIRERGVF-KKFNWRYLVIDEAHRIKNEK 318 (429)
Q Consensus 269 ~~~~~~~~~~~~~dvvit-----ty~~l~~~~~~l-~~~~~~~vIiDEaH~~kn~~ 318 (429)
..+........+..+.|- |+..++.....+ ...+.+++++|=-|-+....
T Consensus 267 ~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~ 322 (435)
T COG0305 267 ERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGK 322 (435)
T ss_pred HHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeecccc
Confidence 222222222233334442 233333333322 33457899999999886544
No 451
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=73.85 E-value=29 Score=31.06 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=18.5
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
...+|..+-|+|||...-.++..+
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 456778999999998776666554
No 452
>PRK10263 DNA translocase FtsK; Provisional
Probab=73.82 E-value=19 Score=41.34 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=28.1
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCC-CeEEEeccc
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAG-PHIVIVPKS 240 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~-~~LIV~P~~ 240 (429)
.+.+++..+|+|||...-++|..+........ .+++|-|+.
T Consensus 1011 PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1011 PHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 45688999999999998888876654333232 344555774
No 453
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=73.57 E-value=60 Score=39.71 Aligned_cols=144 Identities=14% Similarity=0.126 Sum_probs=76.8
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH-HHHHHHhhcCC
Q psy10683 177 KGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN-WMNEFKKWCPT 255 (429)
Q Consensus 177 ~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q-W~~e~~~~~~~ 255 (429)
.+..|-+-|.+++..++. ....-.++.-..|+|||.++-+++..+.. ....+++++|..--.+ ..++...-.
T Consensus 426 ~~~~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~l~~l~~~~~~---~G~~V~~lAPTgrAA~~L~e~~g~~A-- 498 (1960)
T TIGR02760 426 SEFALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEIAQLLLHLASE---QGYEIQIITAGSLSAQELRQKIPRLA-- 498 (1960)
T ss_pred ccCCCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHhcchh--
Confidence 355788999999986543 22345688889999999887776655433 2456777888865443 222211100
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-cCCcEE
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-KTTNRL 334 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~~~~r~ 334 (429)
. .-...+...... + ...|...+......+ ..-++||||||.++.. ......+... ....++
T Consensus 499 -------~---Ti~~~l~~l~~~---~-~~~tv~~fl~~~~~l--~~~~vlIVDEAsMl~~--~~~~~Ll~~a~~~garv 560 (1960)
T TIGR02760 499 -------S---TFITWVKNLFND---D-QDHTVQGLLDKSSPF--SNKDIFVVDEANKLSN--NELLKLIDKAEQHNSKL 560 (1960)
T ss_pred -------h---hHHHHHHhhccc---c-cchhHHHhhcccCCC--CCCCEEEEECCCCCCH--HHHHHHHHHHhhcCCEE
Confidence 0 000001100000 0 011111111111111 2457999999999843 3344444444 467888
Q ss_pred EEeCCccCCCH
Q psy10683 335 LLTGTPLQNNL 345 (429)
Q Consensus 335 ~lTgTP~~n~~ 345 (429)
+|-|=+-|...
T Consensus 561 VlvGD~~QL~s 571 (1960)
T TIGR02760 561 ILLNDSAQRQG 571 (1960)
T ss_pred EEEcChhhcCc
Confidence 88887665433
No 454
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=73.49 E-value=15 Score=35.00 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=23.9
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
.++...+|.|||.++..++.++....+ ..++.+|.
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~~~g-~~~V~li~ 231 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEHG-NKKVALIT 231 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHcC-CCeEEEEE
Confidence 346789999999999888877754211 23455554
No 455
>PRK10646 ADP-binding protein; Provisional
Probab=73.32 E-value=9.3 Score=32.77 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=24.0
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI 236 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV 236 (429)
.+|.-++|.|||.-+=+++..+-.......||.-|
T Consensus 31 i~L~GdLGaGKTtf~rgl~~~Lg~~~~V~SPTFtl 65 (153)
T PRK10646 31 IYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTL 65 (153)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCCCCCCCCEee
Confidence 46789999999998888887764433334444433
No 456
>KOG1807|consensus
Probab=72.50 E-value=7.8 Score=41.42 Aligned_cols=69 Identities=13% Similarity=0.077 Sum_probs=52.5
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc---ccCCCeEEEecc-chHHHHHHHHHh
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR---NIAGPHIVIVPK-STLLNWMNEFKK 251 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~---~~~~~~LIV~P~-~ll~qW~~e~~~ 251 (429)
..|..-|+.|...+.. ..-.|+..++|+|||.+.+-++..+.... ...-|+||+|=. +.+.|....+-.
T Consensus 377 ~ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eeecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 4577789998887764 23468899999999999998887776643 345689999955 888887766654
No 457
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=72.33 E-value=5.8 Score=43.21 Aligned_cols=54 Identities=11% Similarity=-0.016 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc-ccCCCeEEEecc
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR-NIAGPHIVIVPK 239 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~-~~~~~~LIV~P~ 239 (429)
.|.|-|+++|.. ..+..++....|+|||.+.+.-++++.... -.+..+|+++-+
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 578999999862 234567778899999999999998887633 234556766654
No 458
>PRK07773 replicative DNA helicase; Validated
Probab=72.06 E-value=27 Score=39.00 Aligned_cols=117 Identities=12% Similarity=0.029 Sum_probs=59.8
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceE-EEeCC--hhhHHHHHHh
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAI-CLIGD--QDARNAMIRD 274 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~-~~~g~--~~~~~~~~~~ 274 (429)
.|.-.+++..+|+|||..++.++...... ...+++++.-..--.|....+.....++... +..|. ..........
T Consensus 216 ~G~livIagrPg~GKT~fal~ia~~~a~~--~~~~V~~fSlEms~~ql~~R~~s~~~~i~~~~i~~g~l~~~~~~~~~~a 293 (886)
T PRK07773 216 PGQLIIVAARPSMGKTTFGLDFARNCAIR--HRLAVAIFSLEMSKEQLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARA 293 (886)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHh--cCCeEEEEecCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 33346889999999999999998766532 2457788876555555544443322221110 01111 1111111111
Q ss_pred hcCCCCccEEE-----cchHHHHHHhhhh-hccCceEEEecCcccccC
Q psy10683 275 VMMPGEWDVCI-----TSYEMCIRERGVF-KKFNWRYLVIDEAHRIKN 316 (429)
Q Consensus 275 ~~~~~~~dvvi-----tty~~l~~~~~~l-~~~~~~~vIiDEaH~~kn 316 (429)
........+.| .+.+.++.....+ .....++||||=.+.+..
T Consensus 294 ~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~ 341 (886)
T PRK07773 294 MGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTS 341 (886)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCC
Confidence 11112233443 2334444333222 234678999999888853
No 459
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=72.02 E-value=24 Score=33.54 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=59.6
Q ss_pred HHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEEeCChhhHHH
Q psy10683 191 WMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNA 270 (429)
Q Consensus 191 ~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~ 270 (429)
++......+.-+++....|+|||-++..++. ..|..++.+.+-...-...+...+-.
T Consensus 86 ~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~--------s~p~~~l~~~~p~~~a~~~i~~i~~~--------------- 142 (297)
T COG2842 86 RTRPASKTGSLVVVYGYAGLGKTQAAKNYAP--------SNPNALLIEADPSYTALVLILIICAA--------------- 142 (297)
T ss_pred hhhhhhhcCceEEEeccccchhHHHHHhhcc--------cCccceeecCChhhHHHHHHHHHHHH---------------
Confidence 3333334455577888999999987754442 23444555544444434433332211
Q ss_pred HHHhhcCCCCccEEEcchHHHHHHh---hhhhccCceEEEecCcccccCchhHHHHHHHhc--cCCcEEEEeCCcc
Q psy10683 271 MIRDVMMPGEWDVCITSYEMCIRER---GVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF--KTTNRLLLTGTPL 341 (429)
Q Consensus 271 ~~~~~~~~~~~dvvitty~~l~~~~---~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l--~~~~r~~lTgTP~ 341 (429)
....++....... .....-...+||+|||.++.- .....++.+ .+.--+.+.|+|.
T Consensus 143 ------------~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~---~ale~lr~i~d~~Gi~~vLvG~pr 203 (297)
T COG2842 143 ------------AFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPY---RALEELRRIHDKTGIGVVLVGMPR 203 (297)
T ss_pred ------------HhcccchhHHHHHHHHHHHHccCcceeeeehhhccCh---HHHHHHHHHHHhhCceEEEecChH
Confidence 1111111111110 001133556899999999853 344556666 3444577899995
No 460
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=71.77 E-value=2.6 Score=34.76 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=19.8
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.+.-.+|--++|+|||.-+=+++..+-.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3333466889999999988888876633
No 461
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=71.75 E-value=22 Score=38.24 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=17.9
Q ss_pred CCeEeecCCCCCHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~ 221 (429)
.+.+|..++|+|||..+-+++.
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999998877754
No 462
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=71.38 E-value=15 Score=35.69 Aligned_cols=97 Identities=19% Similarity=0.303 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHH
Q psy10683 215 QTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIR 293 (429)
Q Consensus 215 ~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~ 293 (429)
....+..++....+...|+||.+|. ..+.+...-+++.+|...+...+.....|..... ....+..+++|||-=. -+
T Consensus 290 l~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~-~fR~G~~~lLiTTTIL-ER 367 (441)
T COG4098 290 LPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVE-AFRDGKITLLITTTIL-ER 367 (441)
T ss_pred CCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHH-HHHcCceEEEEEeehh-hc
Confidence 3456777888878889999999999 5566677777788888887777777666665443 4455888999888421 11
Q ss_pred HhhhhhccCceEEEecCcccccC
Q psy10683 294 ERGVFKKFNWRYLVIDEAHRIKN 316 (429)
Q Consensus 294 ~~~~l~~~~~~~vIiDEaH~~kn 316 (429)
--.+. +.++.|++--|++-.
T Consensus 368 -GVTfp--~vdV~Vlgaeh~vfT 387 (441)
T COG4098 368 -GVTFP--NVDVFVLGAEHRVFT 387 (441)
T ss_pred -ccccc--cceEEEecCCccccc
Confidence 11111 456888887777654
No 463
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=70.49 E-value=35 Score=35.43 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=31.3
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKK 251 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~ 251 (429)
-++..++|+|||..+..++..... ...++++|.-.....+-.+.+..
T Consensus 276 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~~~yis~e~~~~~i~~~~~~ 322 (509)
T PRK09302 276 ILVSGATGTGKTLLASKFAEAACR---RGERCLLFAFEESRAQLIRNARS 322 (509)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEecCCHHHHHHHHHH
Confidence 367899999999999998865543 24577777655444444444433
No 464
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=70.45 E-value=12 Score=32.40 Aligned_cols=119 Identities=16% Similarity=0.180 Sum_probs=60.2
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhc--CCCceEEEe-CChhhHHHHHHhhcCC
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWC--PTLRAICLI-GDQDARNAMIRDVMMP 278 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~--~~~~~~~~~-g~~~~~~~~~~~~~~~ 278 (429)
..+.-.+|.|||..+.-++..+.... .+.-=++||.. ..-- -+++++-.. |....-...-......
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EV---------R~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rv 76 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEV---------REGGKRIGFKIVDLATGEEGILARVGFSRPRV 76 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeee---------ecCCeEeeeEEEEccCCceEEEEEcCCCCccc
Confidence 45677899999998888887776632 11222455542 1100 122333222 1110000000011122
Q ss_pred CCccEEEcchHHHHHHh--hhhhccCceEEEecCcccccCchhHHHHHHHhc-cCCcE
Q psy10683 279 GEWDVCITSYEMCIRER--GVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-KTTNR 333 (429)
Q Consensus 279 ~~~dvvitty~~l~~~~--~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~~~~r 333 (429)
++|-|.+-..+.+.... ..+. .-|+|||||.--+...+.+..+++... ++...
T Consensus 77 GkY~V~v~~le~i~~~al~rA~~--~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp 132 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRALE--EADVIIIDEIGPMELKSKKFREAVEEVLKSGKP 132 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHhh--cCCEEEEecccchhhccHHHHHHHHHHhcCCCc
Confidence 45555554444222111 1111 258999999999988777777777765 44444
No 465
>PHA00012 I assembly protein
Probab=70.40 E-value=12 Score=36.20 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=14.8
Q ss_pred EeecCCCCCHHHHHHHHHHH
Q psy10683 203 ILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~ 222 (429)
++.-.+|.|||+.+++-+..
T Consensus 5 lITGkPGSGKSl~aV~~I~~ 24 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQD 24 (361)
T ss_pred EEecCCCCCchHHHHHHHHH
Confidence 34566999999999875543
No 466
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=70.10 E-value=21 Score=36.93 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=34.3
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKW 252 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~ 252 (429)
.++.-++|.|||..++.++..... ...+.++|.-..-..|-......+
T Consensus 266 ~li~G~~G~GKt~l~~~f~~~~~~---~ge~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 266 ILATGATGTGKTLLVSKFLENACA---NKERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCCHHHHHHHHHHc
Confidence 578999999999999998876644 234778887665556655555443
No 467
>KOG2028|consensus
Probab=69.17 E-value=28 Score=34.29 Aligned_cols=20 Identities=30% Similarity=0.192 Sum_probs=16.0
Q ss_pred CeEeecCCCCCHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLL 220 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~ 220 (429)
..||..++|.|||..+=.++
T Consensus 164 SmIlWGppG~GKTtlArlia 183 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIA 183 (554)
T ss_pred ceEEecCCCCchHHHHHHHH
Confidence 46899999999998765444
No 468
>PF12846 AAA_10: AAA-like domain
Probab=69.01 E-value=11 Score=35.47 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=30.7
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e 248 (429)
.+.++...+|+|||..+..++..+... ...++|+=|..-...|.+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~---g~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRR---GPRVVIFDPKGDYSPLARA 47 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHc---CCCEEEEcCCchHHHHHHh
Confidence 457888899999999888777655542 3456666666544444433
No 469
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=67.77 E-value=10 Score=33.89 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=26.3
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe-cc
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV-PK 239 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~-P~ 239 (429)
..+.+++-.+|+|||....+++..+..........++|+ |+
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 347899999999999999888887766433334445454 55
No 470
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=67.53 E-value=10 Score=35.51 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=32.2
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe----ccchHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV----PKSTLLNW 245 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~----P~~ll~qW 245 (429)
+..-++.-++|+|||+-++.++...... ..|++.|. |..++.++
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyvs~~e~~~~l~~~~ 70 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGARE---GEPVLYVSTEESPEELLENA 70 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEEEecCCHHHHHHHH
Confidence 3445779999999999999998776653 56788886 34444443
No 471
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=67.28 E-value=4.6 Score=43.41 Aligned_cols=44 Identities=23% Similarity=0.147 Sum_probs=34.9
Q ss_pred cCCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 32 KGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 32 ~~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
.+...||.|++-..-+.....++...++----|.|||+..+...
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~a 55 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPA 55 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHH
Confidence 45689999999888888777777777777777899999877653
No 472
>KOG0738|consensus
Probab=67.26 E-value=6.3 Score=38.91 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=32.2
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEE-EeccchHHHHHHHHHhh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIV-IVPKSTLLNWMNEFKKW 252 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LI-V~P~~ll~qW~~e~~~~ 252 (429)
+.+++.++|+|||+.|-|++.. |+.|.. |..+.+.+.|..|=++.
T Consensus 247 gvLm~GPPGTGKTlLAKAvATE-------c~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATE-------CGTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHh-------hcCeEEEechhhhhhhhccchHHH
Confidence 4577999999999998777642 445555 44557778898775553
No 473
>PRK13531 regulatory ATPase RavA; Provisional
Probab=67.11 E-value=9.1 Score=39.26 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 185 QVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
|.+.|..+......+.+.+|..++|+|||..+-++....
T Consensus 25 re~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 25 RSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred cHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 455666666666778899999999999999998877644
No 474
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=66.83 E-value=59 Score=35.78 Aligned_cols=23 Identities=26% Similarity=0.148 Sum_probs=18.9
Q ss_pred CeEeecCCCCCHHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l 223 (429)
..+|.-++|+|||..+-+++..+
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999888877655
No 475
>KOG2543|consensus
Probab=66.57 E-value=1.4e+02 Score=29.78 Aligned_cols=140 Identities=15% Similarity=0.109 Sum_probs=74.3
Q ss_pred CCChHHHHHHHHHHHHHHhcCC--CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGI--NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTL 256 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~--~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~ 256 (429)
...|.+|...+.-++.--.... ..++....|+|||...-.++... ..+++.+++.... .|..-+.+..-..
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ecf-t~~~lle~IL~~~ 80 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVECF-TYAILLEKILNKS 80 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHhc-cHHHHHHHHHHHh
Confidence 3567888888765553211111 12678889999999988877544 3467777765432 2333333322111
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhh------hc-cCceEEEecCcccccCchhHHHHHHHhc-
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF------KK-FNWRYLVIDEAHRIKNEKSKLSEIVREF- 328 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l------~~-~~~~~vIiDEaH~~kn~~s~~~~~~~~l- 328 (429)
...-..|.... ...+.+......+ .+ -.--++|+|-+..++...+.....+.++
T Consensus 81 ~~~d~dg~~~~------------------~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~ 142 (438)
T KOG2543|consen 81 QLADKDGDKVE------------------GDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLY 142 (438)
T ss_pred ccCCCchhhhh------------------hHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHH
Confidence 10000110000 0011111111111 11 1234789999999998877776666555
Q ss_pred ----cCCcEEEEeCCccCC
Q psy10683 329 ----KTTNRLLLTGTPLQN 343 (429)
Q Consensus 329 ----~~~~r~~lTgTP~~n 343 (429)
...-++.++.++..+
T Consensus 143 el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 143 ELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHhCCCceEEEEeccccHH
Confidence 335678888887644
No 476
>PRK06921 hypothetical protein; Provisional
Probab=66.46 E-value=30 Score=32.60 Aligned_cols=27 Identities=19% Similarity=0.048 Sum_probs=22.2
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
+.+.+|.-++|+|||..+.+++..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 445778999999999999998877654
No 477
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=66.38 E-value=11 Score=35.45 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
.+.+.|.+.+.++.. ..++..+++-++|+|||...-+++..+.
T Consensus 63 g~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 63 GLKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 466778887765543 2222357899999999999888877653
No 478
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=66.36 E-value=14 Score=42.78 Aligned_cols=60 Identities=17% Similarity=0.062 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHH
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWM 246 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~ 246 (429)
+-+-|..+|. ..+.+.++...-|+|||.+.+.-+..+.........+||||=+..-.++.
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~ 61 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREM 61 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHH
Confidence 3467888885 45667888999999999998887765544332335688998766555543
No 479
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=65.77 E-value=40 Score=32.77 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=28.7
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLL 243 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~ 243 (429)
..++-+.|+|||..++.++..... ..+++++|.+...+.
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~ 96 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALD 96 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHH
Confidence 357889999999999988766543 256778887665444
No 480
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=65.67 E-value=9.7 Score=37.39 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceE-EEeCChhhH
Q psy10683 190 NWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAI-CLIGDQDAR 268 (429)
Q Consensus 190 ~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~-~~~g~~~~~ 268 (429)
.++......+.+.+++-.+|+|||...-+++..+.. ...++.|=... |+. .+..+.+ +.+....
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~----~~rivtiEd~~-------El~--l~~~~~v~l~~~~~~-- 217 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIPP----QERLITIEDTL-------ELV--IPHENHVRLLYSKNG-- 217 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHHHHHHHHHcccCC----CCCEEEECCCc-------ccc--CCCCCEEEEEeeccc--
Confidence 345555667788899999999999988777755432 23444332221 111 1211111 1111000
Q ss_pred HHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccCCCHHHH
Q psy10683 269 NAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHEL 348 (429)
Q Consensus 269 ~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl 348 (429)
. ..--.|++.+.+ ...+.++++||+.|.- . .....++....+.+.-.+ +|---++..+.
T Consensus 218 ----------~--~~~~~t~~~ll~---~~LR~~pD~IivGEiR---~--~ea~~~l~a~~tGh~G~l-tTiHa~s~~~a 276 (344)
T PRK13851 218 ----------A--GLGAVTAEHLLQ---ASLRMRPDRILLGEMR---D--DAAWAYLSEVVSGHPGSI-STIHGANPVQG 276 (344)
T ss_pred ----------c--CcCccCHHHHHH---HHhcCCCCeEEEEeeC---c--HHHHHHHHHHHhCCCcEE-ECCCCCCHHHH
Confidence 0 001123333322 2334588999999983 2 335566777666664333 45567777766
Q ss_pred HHHHh
Q psy10683 349 WALLN 353 (429)
Q Consensus 349 ~~ll~ 353 (429)
+.-+-
T Consensus 277 ~~Rl~ 281 (344)
T PRK13851 277 FKKLF 281 (344)
T ss_pred HHHHH
Confidence 55443
No 481
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=65.36 E-value=17 Score=32.58 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.3
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
..|...+|.|||..++.-+..+..
T Consensus 8 IflG~apGVGKTy~ML~ea~~l~~ 31 (211)
T PF02702_consen 8 IFLGAAPGVGKTYAMLQEAHRLKE 31 (211)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 567899999999999888876665
No 482
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=65.35 E-value=19 Score=35.50 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhcCC----CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH
Q psy10683 184 YQVRGLNWMISLYENGI----NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL 242 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~~----~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll 242 (429)
..++|..-+.++...+. +.+++.++|+|||..+++++..+ +..-|+..+.-+.+.
T Consensus 31 ~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL----G~~~PF~~isgSEiy 89 (398)
T PF06068_consen 31 KAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL----GEDVPFVSISGSEIY 89 (398)
T ss_dssp HHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC----TTTS-EEEEEGGGG-
T ss_pred HHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh----CCCCCeeEcccceee
Confidence 34556655666665443 34679999999999998888654 346688777765443
No 483
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=65.07 E-value=17 Score=32.96 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=32.2
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKW 252 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~ 252 (429)
.++.-++|+|||..++.++....... ..+++.|+-..-..+..+.+..+
T Consensus 22 ~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 22 VLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESSS-HHHHHHHHHTT
T ss_pred EEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEecCCHHHHHHHHHHc
Confidence 57789999999999998886543310 34678887555556666666554
No 484
>PHA00350 putative assembly protein
Probab=64.88 E-value=13 Score=37.25 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=13.3
Q ss_pred EeecCCCCCHHHHHHHH
Q psy10683 203 ILADEMGLGKTLQTISL 219 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~ 219 (429)
++--.+|+|||.-++..
T Consensus 5 l~tG~pGSGKT~~aV~~ 21 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVY 21 (399)
T ss_pred EEecCCCCchhHHHHHH
Confidence 34556899999999874
No 485
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=64.87 E-value=24 Score=30.06 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=40.8
Q ss_pred eEEEeccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhc--cCceEEEecC
Q psy10683 233 HIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKK--FNWRYLVIDE 310 (429)
Q Consensus 233 ~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~--~~~~~vIiDE 310 (429)
+.||+=++|-.+..+-+..-+|++..+.+.|+.+......... . -.++.-+++.+....|.. -+-+.|.||=
T Consensus 69 ~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R--~----gHFM~~~ll~SQfa~LE~P~~de~vi~idi 142 (161)
T COG3265 69 HVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKAR--K----GHFMPASLLDSQFATLEEPGADEDVLTIDI 142 (161)
T ss_pred ceEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhc--c----cCCCCHHHHHHHHHHhcCCCCCCCEEEeeC
Confidence 3455455677778888888888877777777765432211111 1 122333444444333322 1236777776
Q ss_pred cccc
Q psy10683 311 AHRI 314 (429)
Q Consensus 311 aH~~ 314 (429)
.|-+
T Consensus 143 ~~~~ 146 (161)
T COG3265 143 DQPP 146 (161)
T ss_pred CCCH
Confidence 6654
No 486
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=64.67 E-value=27 Score=33.85 Aligned_cols=59 Identities=17% Similarity=0.400 Sum_probs=26.1
Q ss_pred EEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc---cCCc-EEEEeCCccCCC
Q psy10683 283 VCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF---KTTN-RLLLTGTPLQNN 344 (429)
Q Consensus 283 vvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l---~~~~-r~~lTgTP~~n~ 344 (429)
+.+.+.+.- +....+....++.||+||+-.+.... ....+... .... +++.|.||-.++
T Consensus 79 i~~~~~~~~-~~~~~~~G~~~~~i~iDE~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~p~~~~~ 141 (384)
T PF03237_consen 79 IQFRGADSP-DSGDNIRGFEYDLIIIDEAAKVPDDA--FSELIRRLRATWGGSIRMYISTPPNPGG 141 (384)
T ss_dssp EEEES------SHHHHHTS--SEEEEESGGGSTTHH--HHHHHHHHHHCSTT--EEEEEE---SSS
T ss_pred EEEeccccc-cccccccccccceeeeeecccCchHH--HHHHHHhhhhcccCcceEEeecCCCCCC
Confidence 445444321 13345566788999999988775432 22222222 2222 336666665555
No 487
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=64.42 E-value=88 Score=29.56 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=18.2
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
.+.++..+.|+|||...-+++..+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc
Confidence 466889999999998776665444
No 488
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=63.92 E-value=20 Score=32.59 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=29.1
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNW 245 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW 245 (429)
+...+++.++|+|||..+..++..... ...++++|.-.....+.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~---~g~~~~~is~e~~~~~i 63 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR---DGDPVIYVTTEESRESI 63 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEEccCCHHHH
Confidence 334578899999999999887754433 13467777754444443
No 489
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=63.90 E-value=26 Score=33.62 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=22.3
Q ss_pred hcCCCeEe-ecCCCCCHHHHHHHHHHHHhh
Q psy10683 197 ENGINGIL-ADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 197 ~~~~~~il-ad~~GlGKT~~~i~~~~~l~~ 225 (429)
....|-|| ..++|+|||.+..+++.++..
T Consensus 122 ~~~~GLILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 122 ESPRGLILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred hCCCceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 44455444 689999999999899888765
No 490
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=63.86 E-value=3.9 Score=39.59 Aligned_cols=42 Identities=19% Similarity=0.378 Sum_probs=31.6
Q ss_pred CceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccCCCH
Q psy10683 302 NWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNL 345 (429)
Q Consensus 302 ~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~n~~ 345 (429)
+-.+||+||||+ ....+.-..+.++-...+..+||.+.|-++
T Consensus 243 ~dAfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 243 NDAFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred CCeEEEEecccc--cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 456899999999 333444455677888999999999976554
No 491
>CHL00095 clpC Clp protease ATP binding subunit
Probab=63.77 E-value=18 Score=39.98 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcC----------CC-eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 184 YQVRGLNWMISLYENG----------IN-GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~----------~~-~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
-|.+++..+...+... .+ -++..++|.|||..+-+++..+..
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~ 565 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG 565 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC
Confidence 3777777776554321 12 367999999999999888876643
No 492
>PF13892 DBINO: DNA-binding domain
Probab=63.25 E-value=2.6 Score=35.29 Aligned_cols=24 Identities=50% Similarity=0.883 Sum_probs=20.5
Q ss_pred CcchhhhhhhhhcccccccccCCC
Q psy10683 78 KIDRFDYLLKQTEIFSHFMTNQGV 101 (429)
Q Consensus 78 ~~~r~~~Ll~q~~i~~~~~~~~~~ 101 (429)
...+++||+.|+++|+||++.+..
T Consensus 111 q~~rl~fLl~QTElfsHF~~~k~~ 134 (139)
T PF13892_consen 111 QQRRLNFLLTQTELFSHFMQNKAK 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHccccc
Confidence 457999999999999999976553
No 493
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=63.13 E-value=96 Score=29.68 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=24.6
Q ss_pred HHHHHhcCC--Ce-EeecCCCCCHHHHHHHHHHHHhh
Q psy10683 192 MISLYENGI--NG-ILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 192 l~~~~~~~~--~~-ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
+...+..+. .+ ++..+.|.||+..+.+++.++..
T Consensus 9 L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC 45 (290)
T PRK05917 9 LIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILK 45 (290)
T ss_pred HHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhC
Confidence 344444443 34 46788999999999999987764
No 494
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=62.94 E-value=19 Score=36.57 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 188 GLNWMISLYENGINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 188 ~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
.+..+...+..+.+.++...+|+|||..+-.++..+.
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 3445566666788999999999999999987766543
No 495
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=62.83 E-value=22 Score=32.71 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=26.3
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEec
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P 238 (429)
...+++.++|+|||..++.++..... ...+.+.|.-
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~ 57 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVAL 57 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEe
Confidence 34577999999999999988765433 2457777763
No 496
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=62.73 E-value=38 Score=32.93 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=28.7
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN 244 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q 244 (429)
..++-+.|+|||..++.++..... ..+++++|.....+.+
T Consensus 58 teI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDP 97 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHH
Confidence 457889999999999988876644 2566777765544443
No 497
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=62.64 E-value=19 Score=31.79 Aligned_cols=43 Identities=26% Similarity=0.299 Sum_probs=30.4
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
.+.+-+.|...+.+++ ..+...+++-++|+|||...-+++..+
T Consensus 7 ~g~~~~~~~~~l~~~v---~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 7 QGTFSPLQAAYLWLAV---EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred cCCCCHHHHHHHHHHH---hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3455666766666554 456778889999999998776666543
No 498
>PF13479 AAA_24: AAA domain
Probab=62.24 E-value=19 Score=32.57 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=20.9
Q ss_pred EEEcchHHHHHHhhhh--hccCceEEEecCcccc
Q psy10683 283 VCITSYEMCIRERGVF--KKFNWRYLVIDEAHRI 314 (429)
Q Consensus 283 vvitty~~l~~~~~~l--~~~~~~~vIiDEaH~~ 314 (429)
+-|.+++.+......+ ....++.||||-+-.+
T Consensus 47 i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 47 IPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred eCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 4455777776655443 2347889999987654
No 499
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=61.86 E-value=15 Score=33.48 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=28.5
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS 240 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ 240 (429)
++..+...+|+|||..+-.++..+.. ....+++|+=|..
T Consensus 24 ~H~~I~G~TGsGKS~~~~~ll~~l~~--~~~~~~ii~D~~G 62 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVKVLLEELLK--KKGAKVIIFDPHG 62 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEcCCC
Confidence 34555566999999999999988774 3345777777764
No 500
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.72 E-value=8.9 Score=37.48 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=27.5
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWM 246 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~ 246 (429)
..|.+|..++|+|||+.|=|++... .-.++=|+-+.++..+.
T Consensus 185 PKGVLLYGPPGTGKTLLAkAVA~~T------~AtFIrvvgSElVqKYi 226 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKAVANQT------DATFIRVVGSELVQKYI 226 (406)
T ss_pred CCceEeeCCCCCcHHHHHHHHHhcc------CceEEEeccHHHHHHHh
Confidence 4577889999999999998877432 22344455545544433
Done!