Query psy10683
Match_columns 429
No_of_seqs 444 out of 3363
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 15:58:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 3.9E-47 1.3E-51 410.3 22.6 258 169-429 225-491 (800)
2 1z3i_X Similar to RAD54-like; 100.0 7.8E-46 2.7E-50 390.9 18.4 251 178-428 53-330 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 2.9E-43 1E-47 361.6 24.2 241 178-428 35-277 (500)
4 3dmq_A RNA polymerase-associat 100.0 6.1E-31 2.1E-35 288.3 11.4 244 178-427 151-450 (968)
5 1wp9_A ATP-dependent RNA helic 99.9 7E-23 2.4E-27 207.4 19.3 214 179-404 8-237 (494)
6 2fwr_A DNA repair protein RAD2 99.9 1.4E-21 4.6E-26 198.9 16.3 190 177-428 90-282 (472)
7 1rif_A DAR protein, DNA helica 99.8 1.6E-20 5.6E-25 178.1 12.3 163 179-357 112-278 (282)
8 2fz4_A DNA repair protein RAD2 99.8 4.5E-19 1.5E-23 163.8 15.1 144 176-346 89-234 (237)
9 3h1t_A Type I site-specific re 99.8 4.4E-19 1.5E-23 185.4 11.9 162 178-352 176-353 (590)
10 2oca_A DAR protein, ATP-depend 99.8 1.1E-18 3.6E-23 179.2 12.3 165 179-359 112-280 (510)
11 3tbk_A RIG-I helicase domain; 99.8 5.7E-18 1.9E-22 174.9 16.8 172 179-357 3-198 (555)
12 4a2p_A RIG-I, retinoic acid in 99.8 4.5E-18 1.6E-22 175.9 14.1 159 179-345 6-181 (556)
13 4a2q_A RIG-I, retinoic acid in 99.7 7.9E-18 2.7E-22 181.8 15.1 159 178-344 246-421 (797)
14 4a2w_A RIG-I, retinoic acid in 99.7 8E-18 2.7E-22 184.2 15.1 164 178-349 246-426 (936)
15 2ykg_A Probable ATP-dependent 99.7 1.3E-17 4.3E-22 177.6 15.2 172 179-357 12-207 (696)
16 2gxq_A Heat resistant RNA depe 99.7 1.8E-16 6.1E-21 142.7 16.6 161 180-348 23-192 (207)
17 4gl2_A Interferon-induced heli 99.7 1.2E-17 3.9E-22 178.0 10.2 172 179-357 6-215 (699)
18 1t6n_A Probable ATP-dependent 99.7 2.3E-16 8E-21 143.5 17.0 162 180-348 36-207 (220)
19 1q0u_A Bstdead; DEAD protein, 99.7 6.2E-16 2.1E-20 140.7 16.5 162 180-349 26-199 (219)
20 1vec_A ATP-dependent RNA helic 99.7 8.7E-16 3E-20 138.1 17.2 155 180-341 25-188 (206)
21 3b6e_A Interferon-induced heli 99.7 1.1E-16 3.9E-21 144.7 10.9 155 178-339 31-216 (216)
22 2oxc_A Probable ATP-dependent 99.7 1.4E-15 4.8E-20 139.6 17.2 152 180-340 46-208 (230)
23 2pl3_A Probable ATP-dependent 99.7 2.3E-15 7.7E-20 138.6 18.1 154 180-341 47-213 (236)
24 3ber_A Probable ATP-dependent 99.7 2.1E-15 7.3E-20 140.1 17.5 156 179-341 64-228 (249)
25 1xti_A Probable ATP-dependent 99.7 1.4E-15 4.8E-20 150.1 17.1 158 180-343 30-197 (391)
26 1qde_A EIF4A, translation init 99.7 2.1E-15 7.1E-20 137.5 16.7 153 180-341 36-197 (224)
27 1hv8_A Putative ATP-dependent 99.6 1.6E-15 5.5E-20 148.0 15.8 156 180-343 28-191 (367)
28 3bor_A Human initiation factor 99.6 1.9E-15 6.5E-20 139.3 14.0 156 180-341 52-215 (237)
29 2w00_A HSDR, R.ECOR124I; ATP-b 99.6 1.9E-15 6.6E-20 165.1 16.0 156 180-343 271-441 (1038)
30 1fuu_A Yeast initiation factor 99.6 2.8E-15 9.7E-20 148.0 15.8 156 179-342 42-205 (394)
31 1s2m_A Putative ATP-dependent 99.6 7.8E-15 2.7E-19 145.3 17.8 155 180-341 43-205 (400)
32 1wrb_A DJVLGB; RNA helicase, D 99.6 1.1E-14 3.9E-19 135.3 17.4 161 180-348 45-226 (253)
33 3eiq_A Eukaryotic initiation f 99.6 3E-15 1E-19 148.9 13.8 157 179-341 61-225 (414)
34 2j0s_A ATP-dependent RNA helic 99.6 7E-15 2.4E-19 146.3 16.2 155 180-341 59-221 (410)
35 3dkp_A Probable ATP-dependent 99.6 1.7E-14 5.8E-19 133.5 17.4 155 180-340 51-220 (245)
36 2z0m_A 337AA long hypothetical 99.6 1.5E-14 5E-19 139.6 17.1 149 180-342 16-172 (337)
37 3oiy_A Reverse gyrase helicase 99.6 7.6E-15 2.6E-19 146.4 12.6 160 179-346 20-209 (414)
38 3pey_A ATP-dependent RNA helic 99.6 1.4E-14 4.7E-19 142.8 13.5 154 179-341 26-188 (395)
39 3iuy_A Probable ATP-dependent 99.6 6.1E-14 2.1E-18 128.2 16.5 154 180-340 42-208 (228)
40 2eyq_A TRCF, transcription-rep 99.5 7E-14 2.4E-18 155.5 17.9 160 178-347 601-768 (1151)
41 3ly5_A ATP-dependent RNA helic 99.5 2.8E-13 9.7E-18 126.7 18.0 155 180-341 76-243 (262)
42 3fe2_A Probable ATP-dependent 99.5 2.6E-13 8.8E-18 125.3 17.1 154 180-340 51-217 (242)
43 1gm5_A RECG; helicase, replica 99.5 7.7E-14 2.6E-18 148.6 13.3 159 178-346 366-532 (780)
44 3fht_A ATP-dependent RNA helic 99.5 2.2E-13 7.4E-18 135.2 15.4 154 180-341 47-211 (412)
45 2db3_A ATP-dependent RNA helic 99.5 4.5E-13 1.5E-17 134.6 16.9 155 180-341 78-247 (434)
46 3fho_A ATP-dependent RNA helic 99.5 7.3E-14 2.5E-18 143.2 10.3 162 180-349 141-309 (508)
47 2i4i_A ATP-dependent RNA helic 99.5 8.7E-13 3E-17 131.2 17.5 155 180-341 37-221 (417)
48 1oyw_A RECQ helicase, ATP-depe 99.5 1.9E-13 6.6E-18 140.4 11.4 166 179-357 24-201 (523)
49 2xgj_A ATP-dependent RNA helic 99.4 2.3E-12 7.8E-17 141.4 18.3 155 178-353 84-244 (1010)
50 2v1x_A ATP-dependent DNA helic 99.4 7.9E-13 2.7E-17 137.5 13.1 164 179-354 43-224 (591)
51 3sqw_A ATP-dependent RNA helic 99.4 2.9E-12 1E-16 133.4 15.5 159 180-342 43-225 (579)
52 3i5x_A ATP-dependent RNA helic 99.4 4.1E-12 1.4E-16 131.7 14.8 158 180-341 94-275 (563)
53 3fmp_B ATP-dependent RNA helic 99.4 2.8E-12 9.5E-17 130.3 13.0 155 179-341 113-278 (479)
54 4a4z_A Antiviral helicase SKI2 99.4 6.9E-12 2.4E-16 137.6 15.9 157 178-353 37-199 (997)
55 3fmo_B ATP-dependent RNA helic 99.3 5.6E-12 1.9E-16 120.2 12.3 154 179-341 113-278 (300)
56 3l9o_A ATP-dependent RNA helic 99.3 1.4E-11 4.9E-16 136.3 17.1 154 179-353 183-342 (1108)
57 2va8_A SSO2462, SKI2-type heli 99.3 1.9E-11 6.7E-16 130.3 14.7 160 180-353 30-196 (715)
58 2zj8_A DNA helicase, putative 99.3 1.1E-11 3.9E-16 132.2 12.2 159 180-352 23-189 (720)
59 2p6r_A Afuhel308 helicase; pro 99.3 1.2E-11 4E-16 131.7 12.3 158 180-352 25-192 (702)
60 4ddu_A Reverse gyrase; topoiso 99.3 2.7E-11 9.4E-16 134.0 14.5 161 178-346 76-266 (1104)
61 1gku_B Reverse gyrase, TOP-RG; 99.1 5.1E-10 1.7E-14 123.7 13.8 152 179-343 56-228 (1054)
62 3crv_A XPD/RAD3 related DNA he 99.0 2.9E-09 9.8E-14 110.0 12.7 132 179-316 2-187 (551)
63 3llm_A ATP-dependent RNA helic 99.0 5.1E-09 1.7E-13 95.9 12.3 153 180-343 61-221 (235)
64 2vl7_A XPD; helicase, unknown 98.9 2.8E-09 9.7E-14 109.7 11.2 69 178-252 5-74 (540)
65 4f92_B U5 small nuclear ribonu 98.8 5.1E-08 1.7E-12 112.1 18.4 161 180-353 926-1104(1724)
66 2v6i_A RNA helicase; membrane, 98.8 1.8E-08 6.3E-13 100.7 11.1 129 199-343 2-137 (431)
67 4f92_B U5 small nuclear ribonu 98.7 1.5E-07 5E-12 108.3 15.9 162 180-352 79-264 (1724)
68 3o8b_A HCV NS3 protease/helica 98.6 1.4E-07 4.9E-12 98.1 10.5 127 198-342 231-362 (666)
69 3mwy_W Chromo domain-containin 98.6 2.5E-08 8.5E-13 107.5 4.1 56 21-76 222-277 (800)
70 2jlq_A Serine protease subunit 98.6 1.8E-07 6E-12 94.1 9.8 128 200-343 20-154 (451)
71 2z83_A Helicase/nucleoside tri 98.5 2.3E-07 7.8E-12 93.5 10.4 133 196-343 18-156 (459)
72 1yks_A Genome polyprotein [con 98.5 3.1E-07 1.1E-11 92.0 10.2 131 197-343 6-143 (440)
73 4a15_A XPD helicase, ATP-depen 98.4 6.3E-07 2.1E-11 93.5 10.9 82 180-263 3-87 (620)
74 2wv9_A Flavivirin protease NS2 98.4 4.1E-07 1.4E-11 95.6 8.8 142 187-343 227-376 (673)
75 2whx_A Serine protease/ntpase/ 98.4 9.9E-07 3.4E-11 92.0 10.0 134 194-343 181-321 (618)
76 2xau_A PRE-mRNA-splicing facto 98.2 4.2E-06 1.4E-10 89.5 11.6 147 183-340 96-250 (773)
77 2ipc_A Preprotein translocase 98.2 2.2E-05 7.5E-10 83.1 14.9 146 178-351 77-238 (997)
78 1z3i_X Similar to RAD54-like; 98.2 5.6E-07 1.9E-11 94.5 2.9 44 34-77 54-102 (644)
79 1nkt_A Preprotein translocase 98.0 6.3E-05 2.1E-09 79.7 15.2 123 178-315 109-244 (922)
80 1z63_A Helicase of the SNF2/RA 98.0 3.2E-06 1.1E-10 85.8 4.2 48 28-76 31-78 (500)
81 2fsf_A Preprotein translocase 98.0 4.9E-05 1.7E-09 80.3 12.6 123 178-315 72-207 (853)
82 1tf5_A Preprotein translocase 97.9 5.1E-05 1.7E-09 80.3 12.2 123 178-315 81-216 (844)
83 3rc3_A ATP-dependent RNA helic 97.9 3.2E-05 1.1E-09 81.2 9.7 122 198-339 154-280 (677)
84 3upu_A ATP-dependent DNA helic 97.7 0.00036 1.2E-08 70.1 13.7 141 179-342 24-166 (459)
85 4b3f_X DNA-binding protein smu 97.7 0.00013 4.6E-09 76.5 10.4 69 178-252 187-256 (646)
86 3e1s_A Exodeoxyribonuclease V, 97.5 0.00046 1.6E-08 71.2 12.0 131 178-342 187-317 (574)
87 2gk6_A Regulator of nonsense t 97.5 0.00055 1.9E-08 71.4 12.8 150 179-342 179-375 (624)
88 2xzl_A ATP-dependent helicase 97.4 0.00074 2.5E-08 72.3 11.7 149 179-342 359-553 (802)
89 2wjy_A Regulator of nonsense t 97.4 0.00095 3.3E-08 71.4 12.0 149 179-342 355-551 (800)
90 1w36_D RECD, exodeoxyribonucle 97.1 0.0032 1.1E-07 65.3 12.6 146 182-343 151-301 (608)
91 2o0j_A Terminase, DNA packagin 96.8 0.025 8.6E-07 55.0 14.9 156 179-354 162-325 (385)
92 3lfu_A DNA helicase II; SF1 he 96.6 0.024 8.2E-07 59.1 14.5 68 180-253 9-78 (647)
93 2orw_A Thymidine kinase; TMTK, 96.4 0.0061 2.1E-07 53.0 7.1 35 202-239 6-40 (184)
94 3vkw_A Replicase large subunit 96.4 0.0083 2.8E-07 59.3 8.8 107 202-342 164-271 (446)
95 3cpe_A Terminase, DNA packagin 96.4 0.012 4E-07 61.0 10.1 147 179-343 162-316 (592)
96 1c4o_A DNA nucleotide excision 96.4 0.01 3.5E-07 62.2 9.7 78 179-262 7-86 (664)
97 2b8t_A Thymidine kinase; deoxy 96.4 0.021 7.2E-07 51.1 10.5 122 202-354 15-145 (223)
98 3jux_A Protein translocase sub 96.3 0.037 1.3E-06 57.8 13.0 76 178-263 73-152 (822)
99 2j9r_A Thymidine kinase; TK1, 96.2 0.038 1.3E-06 49.0 10.9 35 203-240 32-66 (214)
100 2d7d_A Uvrabc system protein B 95.9 0.027 9.4E-07 58.9 10.2 78 179-262 11-90 (661)
101 3dmq_A RNA polymerase-associat 95.9 0.0024 8.3E-08 69.9 2.2 40 34-75 152-191 (968)
102 1xx6_A Thymidine kinase; NESG, 95.9 0.029 9.8E-07 49.0 8.6 34 203-239 12-45 (191)
103 1l8q_A Chromosomal replication 95.7 0.15 5E-06 48.1 13.6 45 200-247 38-82 (324)
104 3syl_A Protein CBBX; photosynt 95.5 0.048 1.7E-06 50.9 9.1 41 201-241 69-110 (309)
105 2orv_A Thymidine kinase; TP4A 95.3 0.15 5.1E-06 45.7 11.3 34 203-239 23-56 (234)
106 1a5t_A Delta prime, HOLB; zinc 95.3 0.1 3.5E-06 49.6 10.8 45 181-225 3-50 (334)
107 2chg_A Replication factor C sm 95.1 0.2 6.7E-06 43.6 11.4 24 201-224 40-63 (226)
108 3ec2_A DNA replication protein 95.0 0.48 1.6E-05 40.1 13.4 42 183-224 17-63 (180)
109 3u61_B DNA polymerase accessor 94.8 0.15 5.2E-06 47.9 10.5 51 302-352 105-157 (324)
110 1sxj_D Activator 1 41 kDa subu 94.7 0.14 4.6E-06 48.7 10.0 33 192-224 49-83 (353)
111 4b4t_J 26S protease regulatory 94.5 0.11 3.9E-06 50.5 8.8 47 199-251 182-228 (405)
112 3eie_A Vacuolar protein sortin 94.3 0.097 3.3E-06 49.4 7.8 39 201-245 53-91 (322)
113 3h4m_A Proteasome-activating n 94.3 0.093 3.2E-06 48.3 7.4 24 199-222 51-74 (285)
114 2qby_B CDC6 homolog 3, cell di 94.2 0.38 1.3E-05 46.1 12.0 44 182-225 25-71 (384)
115 2z4s_A Chromosomal replication 94.2 0.58 2E-05 46.2 13.4 41 200-241 131-171 (440)
116 3bos_A Putative DNA replicatio 94.1 0.27 9.1E-06 43.5 10.0 39 187-225 38-78 (242)
117 1wp9_A ATP-dependent RNA helic 94.1 0.013 4.3E-07 58.1 1.1 37 34-75 8-44 (494)
118 2qp9_X Vacuolar protein sortin 94.1 0.2 6.7E-06 48.1 9.5 23 201-223 86-108 (355)
119 2p65_A Hypothetical protein PF 94.1 0.24 8.4E-06 41.7 9.2 26 200-225 44-69 (187)
120 3n70_A Transport activator; si 94.1 0.094 3.2E-06 43.2 6.3 25 197-221 22-46 (145)
121 3e2i_A Thymidine kinase; Zn-bi 94.0 0.43 1.5E-05 42.2 10.7 35 203-240 32-66 (219)
122 1w4r_A Thymidine kinase; type 93.8 0.26 9E-06 42.8 8.9 34 203-239 24-57 (195)
123 1njg_A DNA polymerase III subu 93.6 0.38 1.3E-05 42.2 10.1 24 201-224 47-70 (250)
124 2gno_A DNA polymerase III, gam 93.3 0.36 1.2E-05 45.2 9.6 37 185-221 2-40 (305)
125 3vfd_A Spastin; ATPase, microt 93.3 0.28 9.6E-06 47.6 9.1 40 200-245 149-188 (389)
126 2v1u_A Cell division control p 93.2 0.4 1.4E-05 45.8 10.1 27 199-225 44-70 (387)
127 1jbk_A CLPB protein; beta barr 93.0 1.5 5.3E-05 36.6 12.6 26 200-225 44-69 (195)
128 2qz4_A Paraplegin; AAA+, SPG7, 92.9 0.39 1.3E-05 43.3 9.0 23 201-223 41-63 (262)
129 1sxj_B Activator 1 37 kDa subu 92.8 0.36 1.2E-05 44.9 8.9 24 201-224 44-67 (323)
130 1iqp_A RFCS; clamp loader, ext 92.5 0.38 1.3E-05 44.9 8.6 36 189-224 34-71 (327)
131 3k1j_A LON protease, ATP-depen 92.4 0.51 1.7E-05 48.7 10.1 38 186-223 47-84 (604)
132 3uk6_A RUVB-like 2; hexameric 92.2 0.77 2.6E-05 43.7 10.5 43 182-224 49-95 (368)
133 1xwi_A SKD1 protein; VPS4B, AA 92.0 0.19 6.5E-06 47.5 5.8 24 200-223 46-69 (322)
134 1fnn_A CDC6P, cell division co 91.9 1.9 6.5E-05 41.0 13.0 24 201-224 46-69 (389)
135 2zan_A Vacuolar protein sortin 91.9 0.36 1.2E-05 47.8 7.9 41 200-245 168-208 (444)
136 4b4t_I 26S protease regulatory 91.9 0.3 1E-05 47.9 7.0 44 200-249 217-260 (437)
137 3cf0_A Transitional endoplasmi 91.8 0.49 1.7E-05 44.0 8.4 41 199-245 49-89 (301)
138 1ofh_A ATP-dependent HSL prote 91.6 1 3.5E-05 41.5 10.4 25 199-223 50-74 (310)
139 3te6_A Regulatory protein SIR3 91.6 7.7 0.00026 36.3 16.4 44 182-225 25-71 (318)
140 2q6t_A DNAB replication FORK h 91.6 1.2 4E-05 44.0 11.3 59 189-249 190-248 (444)
141 3h1t_A Type I site-specific re 91.6 0.12 4E-06 53.2 4.1 43 33-75 176-219 (590)
142 3co5_A Putative two-component 91.6 0.14 4.8E-06 42.0 3.9 23 197-219 25-47 (143)
143 3d8b_A Fidgetin-like protein 1 91.6 0.34 1.1E-05 46.4 7.1 37 200-242 118-154 (357)
144 2bjv_A PSP operon transcriptio 91.1 0.66 2.3E-05 42.0 8.4 26 197-222 27-52 (265)
145 4b4t_L 26S protease subunit RP 91.0 0.2 6.9E-06 49.4 4.9 43 200-248 216-258 (437)
146 4b4t_H 26S protease regulatory 90.8 0.49 1.7E-05 46.8 7.4 45 199-249 243-287 (467)
147 1jr3_A DNA polymerase III subu 90.8 2.5 8.4E-05 40.1 12.4 23 202-224 41-63 (373)
148 4b4t_K 26S protease regulatory 90.3 0.42 1.4E-05 47.0 6.5 43 200-248 207-249 (428)
149 3t15_A Ribulose bisphosphate c 90.2 0.47 1.6E-05 44.0 6.5 39 201-245 38-76 (293)
150 2r6a_A DNAB helicase, replicat 90.1 1.4 4.8E-05 43.6 10.3 58 189-248 193-250 (454)
151 1sxj_C Activator 1 40 kDa subu 89.7 1.8 6E-05 40.9 10.3 40 185-224 30-71 (340)
152 1sxj_A Activator 1 95 kDa subu 89.3 2 6.7E-05 43.3 10.8 24 200-223 78-101 (516)
153 2fwr_A DNA repair protein RAD2 89.1 0.19 6.3E-06 50.0 2.9 39 33-75 91-129 (472)
154 4a1f_A DNAB helicase, replicat 89.0 1 3.5E-05 42.8 7.9 57 189-248 36-92 (338)
155 2chq_A Replication factor C sm 89.0 0.3 1E-05 45.3 4.2 24 201-224 40-63 (319)
156 1ojl_A Transcriptional regulat 88.8 2.9 9.9E-05 38.8 10.8 36 198-236 24-59 (304)
157 3bgw_A DNAB-like replicative h 88.7 1.1 3.8E-05 44.3 8.2 57 189-248 187-243 (444)
158 1rif_A DAR protein, DNA helica 88.6 0.19 6.5E-06 46.3 2.5 38 34-75 112-149 (282)
159 3bh0_A DNAB-like replicative h 88.5 1.9 6.4E-05 40.4 9.4 58 189-249 58-115 (315)
160 2qby_A CDC6 homolog 1, cell di 88.3 1.7 5.9E-05 41.2 9.2 26 200-225 46-71 (386)
161 3hu3_A Transitional endoplasmi 88.3 1 3.5E-05 45.1 7.7 22 200-221 239-260 (489)
162 3dm5_A SRP54, signal recogniti 88.3 3 0.0001 41.0 10.9 32 203-237 104-135 (443)
163 2ce7_A Cell division protein F 88.3 2.7 9.3E-05 41.8 10.7 23 200-222 50-72 (476)
164 3pvs_A Replication-associated 87.7 0.97 3.3E-05 44.7 7.1 22 201-222 52-73 (447)
165 1sxj_E Activator 1 40 kDa subu 87.6 2.6 8.7E-05 39.7 9.9 39 185-223 19-60 (354)
166 3kl4_A SRP54, signal recogniti 86.8 3.4 0.00011 40.6 10.2 32 203-237 101-132 (433)
167 1uaa_A REP helicase, protein ( 86.7 1 3.6E-05 46.9 7.0 68 180-253 2-71 (673)
168 3b9p_A CG5977-PA, isoform A; A 86.5 0.85 2.9E-05 42.0 5.6 23 200-222 55-77 (297)
169 2cvh_A DNA repair and recombin 86.3 7.3 0.00025 33.5 11.5 43 199-247 20-64 (220)
170 1d2n_A N-ethylmaleimide-sensit 86.0 2.4 8.4E-05 38.3 8.4 22 201-222 66-87 (272)
171 3hjh_A Transcription-repair-co 85.7 3.4 0.00012 41.1 9.9 84 201-292 16-114 (483)
172 2fz4_A DNA repair protein RAD2 85.7 0.4 1.4E-05 43.0 2.8 42 30-75 88-129 (237)
173 1g5t_A COB(I)alamin adenosyltr 85.2 4.1 0.00014 35.3 8.9 135 200-354 29-173 (196)
174 2qen_A Walker-type ATPase; unk 85.1 6.9 0.00024 36.3 11.4 37 182-221 17-53 (350)
175 2w58_A DNAI, primosome compone 85.0 2.7 9.4E-05 36.0 7.8 42 184-225 33-80 (202)
176 1r6b_X CLPA protein; AAA+, N-t 84.8 2.9 9.8E-05 44.2 9.3 27 199-225 207-233 (758)
177 2kjq_A DNAA-related protein; s 84.3 2.1 7.3E-05 35.1 6.5 27 198-224 35-61 (149)
178 1qvr_A CLPB protein; coiled co 83.8 3.2 0.00011 44.5 9.3 26 200-225 192-217 (854)
179 2w0m_A SSO2452; RECA, SSPF, un 83.3 20 0.00067 30.8 13.0 39 199-240 23-61 (235)
180 1pjr_A PCRA; DNA repair, DNA r 83.1 2.2 7.6E-05 44.9 7.6 55 180-240 11-66 (724)
181 4a2w_A RIG-I, retinoic acid in 82.8 0.49 1.7E-05 51.5 2.4 39 33-75 246-284 (936)
182 4a2q_A RIG-I, retinoic acid in 82.4 0.53 1.8E-05 50.3 2.4 38 34-75 247-284 (797)
183 4dzz_A Plasmid partitioning pr 82.4 21 0.00073 30.0 12.8 40 205-247 8-49 (206)
184 2ykg_A Probable ATP-dependent 82.1 0.56 1.9E-05 49.0 2.4 38 34-75 12-49 (696)
185 1w5s_A Origin recognition comp 81.6 6 0.00021 37.8 9.6 44 182-225 27-78 (412)
186 4b4t_M 26S protease regulatory 81.5 0.7 2.4E-05 45.5 2.7 44 200-249 216-259 (434)
187 2oca_A DAR protein, ATP-depend 80.3 0.7 2.4E-05 46.2 2.4 37 35-75 113-149 (510)
188 4gl2_A Interferon-induced heli 80.2 0.61 2.1E-05 48.7 1.9 38 34-75 6-43 (699)
189 3pxi_A Negative regulator of g 79.9 2.1 7.1E-05 45.3 5.9 22 202-223 524-545 (758)
190 3b6e_A Interferon-induced heli 79.8 0.78 2.7E-05 39.7 2.2 38 34-75 32-69 (216)
191 3cf2_A TER ATPase, transitiona 79.2 1.7 5.7E-05 46.3 4.8 41 200-246 512-552 (806)
192 3tbk_A RIG-I helicase domain; 79.0 0.91 3.1E-05 45.6 2.7 38 34-75 3-40 (555)
193 2fna_A Conserved hypothetical 78.6 18 0.0006 33.5 11.6 37 182-223 18-54 (357)
194 2qgz_A Helicase loader, putati 76.4 6 0.00021 36.7 7.4 26 199-224 152-177 (308)
195 1xp8_A RECA protein, recombina 76.3 6.1 0.00021 37.8 7.5 45 199-246 74-118 (366)
196 1vma_A Cell division protein F 75.6 11 0.00037 35.0 8.9 32 203-237 108-139 (306)
197 2dhr_A FTSH; AAA+ protein, hex 74.0 19 0.00064 36.0 10.7 22 201-222 66-87 (499)
198 3u4q_A ATP-dependent helicase/ 73.8 5 0.00017 45.0 7.0 58 178-241 8-68 (1232)
199 4a2p_A RIG-I, retinoic acid in 72.9 1.5 5.1E-05 44.1 2.4 37 34-74 6-42 (556)
200 1u94_A RECA protein, recombina 72.5 12 0.00041 35.5 8.5 40 199-241 63-102 (356)
201 3cf2_A TER ATPase, transitiona 72.1 3.8 0.00013 43.6 5.2 42 201-248 240-281 (806)
202 1n0w_A DNA repair protein RAD5 71.8 45 0.0015 28.8 11.8 41 199-239 24-67 (243)
203 2zpa_A Uncharacterized protein 71.7 8.7 0.0003 39.8 7.7 53 179-239 174-226 (671)
204 2px0_A Flagellar biosynthesis 71.4 14 0.00048 34.0 8.5 33 203-237 109-141 (296)
205 2c9o_A RUVB-like 1; hexameric 70.9 5.1 0.00017 39.5 5.7 60 183-246 43-106 (456)
206 1nlf_A Regulatory protein REPA 69.8 52 0.0018 29.4 12.1 47 199-245 30-83 (279)
207 2z0m_A 337AA long hypothetical 69.7 2.3 8E-05 39.3 2.8 36 35-74 16-51 (337)
208 3u4q_B ATP-dependent helicase/ 69.3 5.9 0.0002 44.1 6.3 52 203-254 5-56 (1166)
209 2z43_A DNA repair and recombin 67.4 29 0.001 32.1 10.0 42 199-240 107-151 (324)
210 2zr9_A Protein RECA, recombina 67.4 13 0.00045 35.1 7.5 44 199-245 61-104 (349)
211 1ls1_A Signal recognition part 67.0 21 0.00071 32.8 8.7 31 204-237 103-133 (295)
212 2r44_A Uncharacterized protein 66.4 3.9 0.00013 38.2 3.6 37 187-223 34-70 (331)
213 1zu4_A FTSY; GTPase, signal re 66.1 50 0.0017 30.6 11.2 32 203-237 109-140 (320)
214 1xti_A Probable ATP-dependent 65.2 2.4 8.1E-05 40.3 1.9 34 35-72 30-63 (391)
215 1lv7_A FTSH; alpha/beta domain 63.3 12 0.00043 33.1 6.3 24 200-223 46-69 (257)
216 1q57_A DNA primase/helicase; d 62.4 19 0.00066 35.7 8.1 49 198-248 241-289 (503)
217 1tue_A Replication protein E1; 62.3 7.2 0.00025 34.1 4.2 23 201-223 60-82 (212)
218 2zts_A Putative uncharacterize 61.4 14 0.00047 32.3 6.2 49 201-251 32-80 (251)
219 2dr3_A UPF0273 protein PH0284; 60.6 15 0.00051 32.1 6.2 49 199-250 23-71 (247)
220 3cmu_A Protein RECA, recombina 59.1 49 0.0017 38.9 11.3 44 198-244 1426-1469(2050)
221 2xxa_A Signal recognition part 58.0 16 0.00056 35.6 6.4 33 203-237 104-136 (433)
222 1s2m_A Putative ATP-dependent 57.6 4.9 0.00017 38.3 2.6 34 35-72 43-76 (400)
223 2gxq_A Heat resistant RNA depe 56.8 6.2 0.00021 33.6 2.9 35 34-72 22-56 (207)
224 2w00_A HSDR, R.ECOR124I; ATP-b 56.8 3.9 0.00013 44.8 1.8 40 35-74 271-320 (1038)
225 2j0s_A ATP-dependent RNA helic 56.6 5.6 0.00019 38.1 2.8 34 35-72 59-92 (410)
226 2r2a_A Uncharacterized protein 56.3 5.3 0.00018 34.6 2.3 21 202-222 8-28 (199)
227 1v5w_A DMC1, meiotic recombina 56.2 61 0.0021 30.2 10.0 39 202-240 125-166 (343)
228 1fuu_A Yeast initiation factor 55.9 5.3 0.00018 37.8 2.5 34 34-71 42-75 (394)
229 3hr8_A Protein RECA; alpha and 55.9 23 0.00077 33.6 6.8 40 202-244 64-103 (356)
230 3cmu_A Protein RECA, recombina 55.8 31 0.001 40.5 8.9 45 199-246 732-776 (2050)
231 1hv8_A Putative ATP-dependent 55.1 6.7 0.00023 36.6 3.0 36 35-73 28-63 (367)
232 2ffh_A Protein (FFH); SRP54, s 54.6 64 0.0022 31.3 10.0 32 203-237 102-133 (425)
233 3io5_A Recombination and repai 54.5 45 0.0016 31.1 8.4 42 202-244 31-72 (333)
234 1byi_A Dethiobiotin synthase; 54.5 15 0.00052 31.6 5.1 33 203-238 6-38 (224)
235 1t6n_A Probable ATP-dependent 53.7 6.3 0.00021 34.1 2.4 35 35-73 36-70 (220)
236 2i1q_A DNA repair and recombin 52.7 47 0.0016 30.5 8.5 22 201-222 100-121 (322)
237 3nbx_X ATPase RAVA; AAA+ ATPas 52.7 9.3 0.00032 38.2 3.7 35 187-221 29-63 (500)
238 3hws_A ATP-dependent CLP prote 52.0 15 0.00052 34.6 5.0 34 200-239 52-85 (363)
239 1ypw_A Transitional endoplasmi 51.8 8.4 0.00029 41.0 3.4 23 199-221 238-260 (806)
240 2r62_A Cell division protease 51.7 20 0.00068 31.9 5.6 25 199-223 44-68 (268)
241 3cmw_A Protein RECA, recombina 51.5 34 0.0012 39.4 8.4 44 198-244 731-774 (1706)
242 3pey_A ATP-dependent RNA helic 51.5 6.6 0.00022 37.1 2.3 37 34-72 26-62 (395)
243 1u0j_A DNA replication protein 50.5 20 0.0007 32.5 5.3 34 189-222 90-127 (267)
244 4fcw_A Chaperone protein CLPB; 49.5 12 0.00041 34.2 3.7 24 201-224 49-72 (311)
245 2pl3_A Probable ATP-dependent 48.5 10 0.00035 33.1 3.0 36 34-73 46-81 (236)
246 1vec_A ATP-dependent RNA helic 47.5 11 0.00039 31.9 3.0 34 35-72 25-58 (206)
247 3pfi_A Holliday junction ATP-d 46.9 36 0.0012 31.4 6.7 40 183-222 35-78 (338)
248 2eyq_A TRCF, transcription-rep 46.9 11 0.00037 41.9 3.4 80 229-313 811-893 (1151)
249 1hqc_A RUVB; extended AAA-ATPa 46.3 37 0.0013 31.0 6.6 24 200-223 39-62 (324)
250 2r8r_A Sensor protein; KDPD, P 44.1 23 0.00078 31.3 4.4 43 201-246 8-52 (228)
251 1qde_A EIF4A, translation init 43.8 13 0.00045 32.0 2.9 34 34-71 35-68 (224)
252 3eiq_A Eukaryotic initiation f 43.7 11 0.00039 35.7 2.7 35 34-72 61-95 (414)
253 1g3q_A MIND ATPase, cell divis 43.3 26 0.00088 30.4 4.8 32 203-237 7-38 (237)
254 3of5_A Dethiobiotin synthetase 43.2 17 0.00059 31.9 3.6 24 203-226 9-32 (228)
255 3qxc_A Dethiobiotin synthetase 42.3 18 0.00062 32.2 3.6 24 203-226 26-49 (242)
256 3q9l_A Septum site-determining 42.2 27 0.00091 30.7 4.8 32 203-237 7-38 (260)
257 1um8_A ATP-dependent CLP prote 41.9 27 0.00094 32.9 5.0 24 200-223 73-96 (376)
258 2oze_A ORF delta'; para, walke 41.6 44 0.0015 30.2 6.3 38 206-246 44-83 (298)
259 3ber_A Probable ATP-dependent 41.5 15 0.00051 32.6 3.0 36 34-73 64-99 (249)
260 1q0u_A Bstdead; DEAD protein, 41.1 11 0.00037 32.5 1.9 35 34-72 25-59 (219)
261 1cp2_A CP2, nitrogenase iron p 41.1 21 0.00071 31.8 3.9 29 205-236 7-35 (269)
262 1hyq_A MIND, cell division inh 40.8 31 0.0011 30.4 5.0 32 203-237 7-38 (263)
263 3pxg_A Negative regulator of g 40.5 23 0.00078 34.9 4.4 27 199-225 201-227 (468)
264 2oxc_A Probable ATP-dependent 40.4 15 0.00052 32.0 2.7 33 35-71 46-78 (230)
265 1sky_E F1-ATPase, F1-ATP synth 40.2 1.4E+02 0.0047 29.4 9.8 37 188-225 141-177 (473)
266 3fwy_A Light-independent proto 39.8 23 0.00077 32.9 4.0 29 205-236 54-82 (314)
267 2ph1_A Nucleotide-binding prot 39.6 31 0.001 30.7 4.8 40 203-245 23-65 (262)
268 3end_A Light-independent proto 39.2 23 0.0008 32.3 4.0 28 206-236 48-75 (307)
269 3fgn_A Dethiobiotin synthetase 39.2 21 0.00073 31.9 3.5 24 203-226 31-54 (251)
270 3cio_A ETK, tyrosine-protein k 39.2 34 0.0012 31.3 5.1 30 205-237 111-140 (299)
271 3kjh_A CO dehydrogenase/acetyl 39.2 15 0.00051 32.1 2.5 38 205-245 6-45 (254)
272 2x8a_A Nuclear valosin-contain 39.1 19 0.00067 32.5 3.3 22 200-221 45-66 (274)
273 2afh_E Nitrogenase iron protei 38.5 25 0.00084 31.8 4.0 29 205-236 8-36 (289)
274 2oap_1 GSPE-2, type II secreti 38.4 30 0.001 34.5 4.9 39 181-222 245-283 (511)
275 2iut_A DNA translocase FTSK; n 37.7 40 0.0014 34.2 5.6 42 199-240 214-256 (574)
276 3bfv_A CAPA1, CAPB2, membrane 37.1 36 0.0012 30.7 4.8 29 205-236 89-117 (271)
277 1ixz_A ATP-dependent metallopr 36.8 70 0.0024 27.9 6.7 22 201-222 51-72 (254)
278 3ug7_A Arsenical pump-driving 36.6 44 0.0015 31.4 5.5 41 202-245 29-71 (349)
279 2j37_W Signal recognition part 36.4 96 0.0033 30.8 8.1 33 203-238 105-137 (504)
280 3la6_A Tyrosine-protein kinase 36.3 39 0.0013 30.7 5.0 32 203-237 97-128 (286)
281 3zq6_A Putative arsenical pump 36.0 39 0.0013 31.3 4.9 40 203-245 18-59 (324)
282 2r2a_A Uncharacterized protein 35.9 33 0.0011 29.4 4.1 40 302-341 87-133 (199)
283 1ry6_A Internal kinesin; kines 35.8 30 0.001 32.8 4.2 25 194-218 78-104 (360)
284 1e9r_A Conjugal transfer prote 35.7 33 0.0011 33.2 4.6 26 199-224 53-78 (437)
285 3e70_C DPA, signal recognition 35.6 2.6E+02 0.0089 25.7 10.7 32 203-237 133-164 (328)
286 1wrb_A DJVLGB; RNA helicase, D 35.4 20 0.00068 31.6 2.7 35 35-73 45-79 (253)
287 3ea0_A ATPase, para family; al 34.9 42 0.0014 29.1 4.8 33 203-237 9-41 (245)
288 1p9r_A General secretion pathw 34.8 60 0.0021 31.4 6.2 45 178-224 148-192 (418)
289 1in4_A RUVB, holliday junction 34.4 35 0.0012 31.7 4.4 24 200-223 52-75 (334)
290 4akg_A Glutathione S-transfera 33.6 57 0.002 39.5 6.8 59 183-241 907-965 (2695)
291 2ius_A DNA translocase FTSK; n 33.3 52 0.0018 32.8 5.6 43 198-240 166-209 (512)
292 2c95_A Adenylate kinase 1; tra 33.1 41 0.0014 27.9 4.3 26 198-223 8-33 (196)
293 3vaa_A Shikimate kinase, SK; s 32.9 33 0.0011 29.0 3.6 25 199-223 25-49 (199)
294 3bor_A Human initiation factor 32.8 20 0.00067 31.4 2.2 34 35-72 52-85 (237)
295 4ag6_A VIRB4 ATPase, type IV s 32.4 67 0.0023 30.4 6.1 45 199-246 35-79 (392)
296 3cwq_A Para family chromosome 32.3 78 0.0027 26.9 6.0 42 203-248 5-48 (209)
297 1g41_A Heat shock protein HSLU 32.2 44 0.0015 32.7 4.8 24 200-223 51-74 (444)
298 3trf_A Shikimate kinase, SK; a 32.1 34 0.0012 28.3 3.5 24 200-223 6-29 (185)
299 4ehx_A Tetraacyldisaccharide 4 32.1 1.3E+02 0.0044 27.8 7.8 19 207-225 46-64 (315)
300 2qe7_A ATP synthase subunit al 32.0 97 0.0033 30.7 7.2 63 198-264 161-227 (502)
301 1iy2_A ATP-dependent metallopr 31.8 90 0.0031 27.7 6.6 22 201-222 75-96 (278)
302 3umf_A Adenylate kinase; rossm 31.7 1.2E+02 0.0041 26.2 7.1 20 202-221 32-51 (217)
303 2xj4_A MIPZ; replication, cell 31.7 44 0.0015 30.1 4.5 41 204-247 10-53 (286)
304 1c4o_A DNA nucleotide excision 31.5 19 0.00065 37.3 2.1 41 35-75 8-49 (664)
305 3igf_A ALL4481 protein; two-do 30.6 28 0.00094 33.3 3.0 40 204-246 7-47 (374)
306 3lda_A DNA repair protein RAD5 30.4 3.6E+02 0.012 25.6 12.9 39 202-240 181-222 (400)
307 3ez2_A Plasmid partition prote 30.1 40 0.0014 32.2 4.1 34 203-236 113-149 (398)
308 1cr0_A DNA primase/helicase; R 29.9 73 0.0025 28.6 5.7 41 197-239 33-73 (296)
309 3k9g_A PF-32 protein; ssgcid, 29.8 47 0.0016 29.4 4.3 40 203-246 32-73 (267)
310 1wcv_1 SOJ, segregation protei 29.7 34 0.0012 30.3 3.3 38 205-245 13-52 (257)
311 2woo_A ATPase GET3; tail-ancho 29.7 54 0.0018 30.4 4.8 41 202-245 22-64 (329)
312 3iij_A Coilin-interacting nucl 29.5 46 0.0016 27.3 4.0 25 199-223 11-35 (180)
313 3pg5_A Uncharacterized protein 29.3 28 0.00096 32.9 2.8 29 205-236 8-36 (361)
314 3pxi_A Negative regulator of g 29.2 42 0.0014 35.2 4.4 26 199-224 201-226 (758)
315 3dc4_A Kinesin-like protein NO 28.3 48 0.0016 31.2 4.2 19 198-216 92-112 (344)
316 3iqw_A Tail-anchored protein t 28.3 78 0.0027 29.5 5.6 42 203-247 20-63 (334)
317 3t8y_A CHEB, chemotaxis respon 28.1 1.8E+02 0.0062 22.9 7.4 43 298-341 67-109 (164)
318 3ice_A Transcription terminati 28.1 79 0.0027 30.5 5.6 73 186-264 162-234 (422)
319 2ck3_A ATP synthase subunit al 28.1 1.5E+02 0.0053 29.3 7.9 77 187-264 151-235 (510)
320 3nwn_A Kinesin-like protein KI 28.1 45 0.0016 31.6 4.0 25 194-218 98-124 (359)
321 2ga8_A Hypothetical 39.9 kDa p 27.9 69 0.0024 30.3 5.2 22 202-223 27-48 (359)
322 3fht_A ATP-dependent RNA helic 27.5 27 0.00094 32.9 2.4 36 34-71 46-81 (412)
323 3kb2_A SPBC2 prophage-derived 26.8 46 0.0016 26.8 3.4 21 202-222 4-24 (173)
324 1g8p_A Magnesium-chelatase 38 26.7 38 0.0013 31.3 3.2 25 199-223 45-69 (350)
325 3tqf_A HPR(Ser) kinase; transf 26.4 39 0.0013 28.6 2.8 23 199-221 16-38 (181)
326 3gbj_A KIF13B protein; kinesin 26.4 61 0.0021 30.6 4.5 22 196-217 88-111 (354)
327 2qmh_A HPR kinase/phosphorylas 26.3 33 0.0011 29.7 2.4 21 201-221 36-56 (205)
328 3iuy_A Probable ATP-dependent 26.2 39 0.0013 29.0 3.0 35 34-72 41-75 (228)
329 2wbe_C Bipolar kinesin KRP-130 26.2 65 0.0022 30.6 4.7 26 193-218 93-120 (373)
330 1kht_A Adenylate kinase; phosp 26.0 47 0.0016 27.3 3.4 23 202-224 6-28 (192)
331 3vkg_A Dynein heavy chain, cyt 26.0 92 0.0031 38.4 6.7 62 181-242 888-949 (3245)
332 2owm_A Nckin3-434, related to 25.9 62 0.0021 31.6 4.6 21 197-217 133-155 (443)
333 4ag6_A VIRB4 ATPase, type IV s 25.8 38 0.0013 32.2 3.0 39 302-340 262-305 (392)
334 2ze6_A Isopentenyl transferase 25.7 46 0.0016 29.5 3.4 21 203-223 5-25 (253)
335 1x88_A Kinesin-like protein KI 25.5 57 0.002 30.8 4.2 23 196-218 84-108 (359)
336 1bg2_A Kinesin; motor protein, 25.5 57 0.0019 30.4 4.0 26 193-218 70-97 (325)
337 1zuh_A Shikimate kinase; alpha 25.4 51 0.0017 26.7 3.4 23 201-223 9-31 (168)
338 1qhx_A CPT, protein (chloramph 25.2 43 0.0015 27.3 2.9 21 202-222 6-26 (178)
339 2rhm_A Putative kinase; P-loop 25.0 48 0.0016 27.4 3.3 22 202-223 8-29 (193)
340 2woj_A ATPase GET3; tail-ancho 25.0 69 0.0023 30.1 4.6 41 203-244 22-64 (354)
341 2y65_A Kinesin, kinesin heavy 24.9 58 0.002 30.9 4.0 22 196-217 80-103 (365)
342 1aky_A Adenylate kinase; ATP:A 24.6 55 0.0019 27.9 3.6 23 201-223 6-28 (220)
343 3io3_A DEHA2D07832P; chaperone 24.6 1.1E+02 0.0036 28.8 5.9 44 203-247 22-67 (348)
344 1nks_A Adenylate kinase; therm 24.4 51 0.0017 27.1 3.3 22 203-224 5-26 (194)
345 1ihu_A Arsenical pump-driving 24.4 70 0.0024 32.3 4.9 41 202-245 11-53 (589)
346 3nwj_A ATSK2; P loop, shikimat 24.4 83 0.0028 27.9 4.8 25 199-223 48-72 (250)
347 2d7d_A Uvrabc system protein B 24.3 28 0.00096 36.0 1.9 41 34-74 11-52 (661)
348 2r9v_A ATP synthase subunit al 24.3 1E+02 0.0036 30.6 5.9 61 187-252 164-228 (515)
349 3fkq_A NTRC-like two-domain pr 24.2 75 0.0026 29.9 4.8 32 203-237 148-179 (373)
350 1v8k_A Kinesin-like protein KI 24.1 47 0.0016 32.1 3.2 22 197-218 151-174 (410)
351 2nr8_A Kinesin-like protein KI 23.9 60 0.0021 30.7 4.0 22 196-217 99-122 (358)
352 2jaq_A Deoxyguanosine kinase; 23.8 54 0.0018 27.3 3.4 21 203-223 4-24 (205)
353 3b6u_A Kinesin-like protein KI 23.8 61 0.0021 30.8 4.0 25 194-218 95-121 (372)
354 4a14_A Kinesin, kinesin-like p 23.5 64 0.0022 30.3 4.0 26 192-217 75-102 (344)
355 1goj_A Kinesin, kinesin heavy 23.4 60 0.0021 30.6 3.8 26 193-218 73-100 (355)
356 1ak2_A Adenylate kinase isoenz 23.3 60 0.002 28.1 3.6 23 201-223 18-40 (233)
357 2yhs_A FTSY, cell division pro 23.2 2.5E+02 0.0086 27.7 8.4 31 203-236 297-327 (503)
358 1r6b_X CLPA protein; AAA+, N-t 22.7 49 0.0017 34.6 3.4 22 202-223 491-512 (758)
359 2vvg_A Kinesin-2; motor protei 22.7 57 0.002 30.7 3.5 20 198-217 87-108 (350)
360 2zfi_A Kinesin-like protein KI 22.5 68 0.0023 30.4 4.0 21 198-218 87-109 (366)
361 3dkp_A Probable ATP-dependent 22.5 42 0.0015 29.2 2.5 33 35-71 51-83 (245)
362 3a8t_A Adenylate isopentenyltr 22.4 47 0.0016 31.2 2.8 22 202-223 43-64 (339)
363 3lre_A Kinesin-like protein KI 22.4 55 0.0019 30.9 3.4 22 196-217 101-124 (355)
364 2yvu_A Probable adenylyl-sulfa 22.2 59 0.002 26.8 3.3 24 202-225 16-39 (186)
365 3oaa_A ATP synthase subunit al 22.1 1.8E+02 0.0063 28.8 7.1 73 187-264 151-227 (513)
366 1y63_A LMAJ004144AAA protein; 22.0 63 0.0021 26.7 3.4 21 201-221 12-32 (184)
367 1fx0_A ATP synthase alpha chai 22.0 1.1E+02 0.0036 30.5 5.4 50 198-251 162-215 (507)
368 3lw7_A Adenylate kinase relate 21.9 50 0.0017 26.5 2.7 17 203-219 5-21 (179)
369 3cm0_A Adenylate kinase; ATP-b 21.9 63 0.0022 26.5 3.4 21 202-222 7-27 (186)
370 1t5c_A CENP-E protein, centrom 21.9 59 0.002 30.6 3.4 21 197-217 74-96 (349)
371 1gm5_A RECG; helicase, replica 21.9 56 0.0019 34.5 3.6 41 33-73 366-408 (780)
372 1qf9_A UMP/CMP kinase, protein 21.5 62 0.0021 26.5 3.3 21 202-222 9-29 (194)
373 1via_A Shikimate kinase; struc 21.5 66 0.0023 26.2 3.4 23 201-223 6-28 (175)
374 1zak_A Adenylate kinase; ATP:A 21.4 74 0.0025 27.1 3.8 23 201-223 7-29 (222)
375 1ko7_A HPR kinase/phosphatase; 21.1 86 0.0029 29.0 4.3 23 199-221 144-166 (314)
376 3ez9_A Para; DNA binding, wing 21.1 41 0.0014 32.2 2.2 34 203-236 116-152 (403)
377 2v3c_C SRP54, signal recogniti 20.9 74 0.0025 30.9 4.0 33 202-237 102-134 (432)
378 1tev_A UMP-CMP kinase; ploop, 20.9 68 0.0023 26.3 3.4 21 202-222 6-26 (196)
379 3t61_A Gluconokinase; PSI-biol 20.8 66 0.0023 26.9 3.3 23 201-223 20-42 (202)
380 1e6c_A Shikimate kinase; phosp 20.5 72 0.0025 25.7 3.4 22 202-223 5-26 (173)
381 3i5x_A ATP-dependent RNA helic 20.3 2.6E+02 0.0088 27.5 8.1 61 227-288 336-400 (563)
382 2heh_A KIF2C protein; kinesin, 20.3 62 0.0021 31.0 3.2 23 196-218 130-154 (387)
383 2iyv_A Shikimate kinase, SK; t 20.2 71 0.0024 26.2 3.3 21 202-222 5-25 (184)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-47 Score=410.27 Aligned_cols=258 Identities=43% Similarity=0.802 Sum_probs=225.1
Q ss_pred ccCCCccccCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHH
Q psy10683 169 FENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 169 ~~~~p~~~~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e 248 (429)
+..+|++..++.|||||++|++||...+.++.+|||||+||+|||+++++++..+.......+|+|||||.+++.||.+|
T Consensus 225 ~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E 304 (800)
T 3mwy_W 225 LSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDT 304 (800)
T ss_dssp CSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHH
T ss_pred cccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHH
Confidence 45668888889999999999999999999999999999999999999999999887767788999999999999999999
Q ss_pred HHhhcCCCceEEEeCChhhHHHHHHhh---------cCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchh
Q psy10683 249 FKKWCPTLRAICLIGDQDARNAMIRDV---------MMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKS 319 (429)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s 319 (429)
|.+|+|++++.+++|....+....... .....++|+||||+++.++...+..+.|++|||||||+++|..+
T Consensus 305 ~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s 384 (800)
T 3mwy_W 305 FEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAES 384 (800)
T ss_dssp HHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSSS
T ss_pred HHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCchh
Confidence 999999999999999988776543322 23457899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCChhHHHHHHHHhhhhhhhhchh
Q psy10683 320 KLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRRLKS 399 (429)
Q Consensus 320 ~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~lRr~k~ 399 (429)
+.++++..+.+.+||+|||||++|++.|||++++||.|+.|.....|.-.... ......+.+|+.+++|+++||+++
T Consensus 385 ~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~---~~~~~~~~~L~~~l~p~~lRR~k~ 461 (800)
T 3mwy_W 385 SLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD---EEQEEYIHDLHRRIQPFILRRLKK 461 (800)
T ss_dssp HHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCT---THHHHHHHHHHHTTGGGEEECCGG
T ss_pred HHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccc---hhHHHHHHHHHHHHhHHHhhhhHH
Confidence 99999999999999999999999999999999999999999877666422211 122456788999999999999999
Q ss_pred HHhhcCCCceEEEEEEcCCHHHHHHHHHhC
Q psy10683 400 EVEKRLKPKKELKVYVGLSKMQREWYTKVC 429 (429)
Q Consensus 400 ~v~~~LP~~~e~~v~v~~s~~Q~~~Y~~il 429 (429)
++...||++.+.+++|+||+.|+++|+.++
T Consensus 462 dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~ 491 (800)
T 3mwy_W 462 DVEKSLPSKTERILRVELSDVQTEYYKNIL 491 (800)
T ss_dssp GGTTTSCCEEEEEEEECCCHHHHHHHHHHH
T ss_pred hhhhccCCcEEEEEEeCCCHHHHHHHHHHH
Confidence 999999999999999999999999998763
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.8e-46 Score=390.91 Aligned_cols=251 Identities=29% Similarity=0.450 Sum_probs=214.9
Q ss_pred CCCChHHHHHHHHHHHHHH-----hcCCCeEeecCCCCCHHHHHHHHHHHHhhhcc----cCCCeEEEeccchHHHHHHH
Q psy10683 178 GGEMRDYQVRGLNWMISLY-----ENGINGILADEMGLGKTLQTISLLGYMKHYRN----IAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~-----~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~----~~~~~LIV~P~~ll~qW~~e 248 (429)
...|||||++|++||+..+ ..+.+|||||+||+|||+++|+++..+..... ..+++|||||.+++.||.+|
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E 132 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNE 132 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHH
Confidence 3589999999999999876 45668999999999999999999988766433 24568999999999999999
Q ss_pred HHhhcCC-CceEEEeCC-hhhHHHHHHhhcC----CCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHH
Q psy10683 249 FKKWCPT-LRAICLIGD-QDARNAMIRDVMM----PGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLS 322 (429)
Q Consensus 249 ~~~~~~~-~~~~~~~g~-~~~~~~~~~~~~~----~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~ 322 (429)
|.+|++. ..++.+++. ............. ...++|+|+||+++..+...+....|++||+||||+++|..++.+
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~ 212 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTY 212 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHH
T ss_pred HHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHH
Confidence 9999975 556665554 3333322222221 135789999999999999999999999999999999999999999
Q ss_pred HHHHhccCCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCC------------ChhHHHHHHHHhh
Q psy10683 323 EIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMG------------DHSIIERLHSVLK 390 (429)
Q Consensus 323 ~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~------------~~~~~~~L~~~l~ 390 (429)
+++..+.+.+||+|||||++|++.|||++++|++|++|++...|.++|..+...+ ....+.+|+.++.
T Consensus 213 ~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 292 (644)
T 1z3i_X 213 LALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVN 292 (644)
T ss_dssp HHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997653211 1245678999999
Q ss_pred hhhhhhchhHHhhcCCCceEEEEEEcCCHHHHHHHHHh
Q psy10683 391 PFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTKV 428 (429)
Q Consensus 391 ~~~lRr~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y~~i 428 (429)
||++||+++++...||++.+.+++|+||+.|+++|+.+
T Consensus 293 ~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~ 330 (644)
T 1z3i_X 293 RCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLF 330 (644)
T ss_dssp HHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHH
T ss_pred HHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999976
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.9e-43 Score=361.64 Aligned_cols=241 Identities=37% Similarity=0.680 Sum_probs=218.7
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~ 257 (429)
...|+|||.+|+.|+......+.++||+|+||+|||+++++++..+.. .+..+++|||||.+++.||.+||.+|+|+.+
T Consensus 35 ~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P~~l~~qw~~e~~~~~~~~~ 113 (500)
T 1z63_A 35 KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELSKFAPHLR 113 (500)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHHHHCTTSC
T ss_pred hccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEccHHHHHHHHHHHHHHCCCce
Confidence 468999999999999988888899999999999999999999988765 4556799999999999999999999999999
Q ss_pred eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEe
Q psy10683 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLT 337 (429)
Q Consensus 258 ~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lT 337 (429)
+.+++|.... .....++|+|+||+++.++.. +....|++||+||||+++|..++.++++..+.+.++|+||
T Consensus 114 v~~~~g~~~~--------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LT 184 (500)
T 1z63_A 114 FAVFHEDRSK--------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALT 184 (500)
T ss_dssp EEECSSSTTS--------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEEC
T ss_pred EEEEecCchh--------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEe
Confidence 9988886531 123468899999999987655 6778999999999999999999999999999999999999
Q ss_pred CCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCChhHHHHHHHHhhhhhhhhchhH--HhhcCCCceEEEEEE
Q psy10683 338 GTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRRLKSE--VEKRLKPKKELKVYV 415 (429)
Q Consensus 338 gTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~lRr~k~~--v~~~LP~~~e~~v~v 415 (429)
|||++|++.|+|++++|+.|+++++...|.+.|..+...++....++|+.+++|+++||++.+ +...||++.+..++|
T Consensus 185 aTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~ 264 (500)
T 1z63_A 185 GTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYC 264 (500)
T ss_dssp SSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEE
T ss_pred cCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEc
Confidence 999999999999999999999999999999999988777788888999999999999999965 667899999999999
Q ss_pred cCCHHHHHHHHHh
Q psy10683 416 GLSKMQREWYTKV 428 (429)
Q Consensus 416 ~~s~~Q~~~Y~~i 428 (429)
+||+.|+++|+.+
T Consensus 265 ~l~~~~~~~y~~~ 277 (500)
T 1z63_A 265 NLTPEQAAMYKAE 277 (500)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999864
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97 E-value=6.1e-31 Score=288.25 Aligned_cols=244 Identities=20% Similarity=0.214 Sum_probs=187.8
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~ 257 (429)
...|+|||.+++.|++.. .+.++||+|+||+|||+++++++..+.. .+..+++|||||.+++.||..||.+++ +..
T Consensus 151 ~~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~-~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~ 226 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-NLR 226 (968)
T ss_dssp SSCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHH-TSSCCCEEEECCTTTHHHHHHHHHHHS-CCC
T ss_pred CCCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEeCHHHHHHHHHHHHHHh-CCC
Confidence 368999999999998763 3567899999999999999999987766 456678999999999999999998888 567
Q ss_pred eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh---hhhhccCceEEEecCcccccCchhH---HHHHHHhc--c
Q psy10683 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER---GVFKKFNWRYLVIDEAHRIKNEKSK---LSEIVREF--K 329 (429)
Q Consensus 258 ~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~---~~l~~~~~~~vIiDEaH~~kn~~s~---~~~~~~~l--~ 329 (429)
+.++.+...... ..........++|+|+||+.+.++. ..+....|++|||||||+++|..+. .++++..+ .
T Consensus 227 v~v~~~~~~~~~-~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~ 305 (968)
T 3dmq_A 227 FALFDDERYAEA-QHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305 (968)
T ss_dssp CEECCHHHHHHH-HHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT
T ss_pred EEEEccchhhhh-hhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc
Confidence 777766443321 1122233356899999999998764 3466779999999999999986644 47778877 7
Q ss_pred CCcEEEEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhccccc----------------------------------
Q psy10683 330 TTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEF---------------------------------- 375 (429)
Q Consensus 330 ~~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~---------------------------------- 375 (429)
+.++|+|||||++|++.|+|++++|+.|+.|++...|...+.....
T Consensus 306 ~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l 385 (968)
T 3dmq_A 306 VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPL 385 (968)
T ss_dssp CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTT
T ss_pred CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHH
Confidence 7889999999999999999999999999999999888766421100
Q ss_pred ---------CCChhHHHHHHHHhh-----hhhhhhchhHHhhcCCCceEEEEEEcCCHHHHHHHHH
Q psy10683 376 ---------MGDHSIIERLHSVLK-----PFLLRRLKSEVEKRLKPKKELKVYVGLSKMQREWYTK 427 (429)
Q Consensus 376 ---------~~~~~~~~~L~~~l~-----~~~lRr~k~~v~~~LP~~~e~~v~v~~s~~Q~~~Y~~ 427 (429)
.........+..++. .+++|+++..+. .+|++....+.+.+++.++..|+.
T Consensus 386 ~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~ 450 (968)
T 3dmq_A 386 LQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKV 450 (968)
T ss_dssp GGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHH
T ss_pred HhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHH
Confidence 000112223333332 345666676665 689999999999999999999864
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=7e-23 Score=207.44 Aligned_cols=214 Identities=17% Similarity=0.203 Sum_probs=153.8
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc--CC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC--PT 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~--~~ 255 (429)
..|+|||.+++.+++. + ++|++++||+|||++++.++..... ...+++|||||. +++.||.+++.+++ +.
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 4799999999998865 3 8999999999999999998876654 446789999998 89999999999998 55
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCchhH--HHHHHH-hccC
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNEKSK--LSEIVR-EFKT 330 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s~--~~~~~~-~l~~ 330 (429)
..+..++|.......... . ...+|+|+||+.+..... .+....|++||+||||++++.... ....+. ....
T Consensus 81 ~~v~~~~g~~~~~~~~~~-~---~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKA-W---ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp GGEEEECSCSCHHHHHHH-H---HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred hheEEeeCCcchhhhhhh-c---cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 688888887654322111 1 246899999999987654 445568999999999999864322 222222 2367
Q ss_pred CcEEEEeCCccCCCHHHHHHHHhhhCCCCCC---ChHH-HHhhhccc----ccCCChhHHHHHHHHhhhhhhhhchhHHh
Q psy10683 331 TNRLLLTGTPLQNNLHELWALLNFLLPDIFS---SSDD-FDSWFNTE----EFMGDHSIIERLHSVLKPFLLRRLKSEVE 402 (429)
Q Consensus 331 ~~r~~lTgTP~~n~~~dl~~ll~fl~p~~~~---~~~~-f~~~~~~~----~~~~~~~~~~~L~~~l~~~~lRr~k~~v~ 402 (429)
.++|+|||||. ++..+++.++.++...... .... +..++... ...........+...+.+++.++.+....
T Consensus 157 ~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (494)
T 1wp9_A 157 PLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAE 235 (494)
T ss_dssp CCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999 7788888888888654322 1111 11222111 11123456677888888888888876655
Q ss_pred hc
Q psy10683 403 KR 404 (429)
Q Consensus 403 ~~ 404 (429)
..
T Consensus 236 ~~ 237 (494)
T 1wp9_A 236 TG 237 (494)
T ss_dssp HT
T ss_pred hc
Confidence 44
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.87 E-value=1.4e-21 Score=198.91 Aligned_cols=190 Identities=19% Similarity=0.262 Sum_probs=149.2
Q ss_pred cCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC
Q psy10683 177 KGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT 255 (429)
Q Consensus 177 ~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~ 255 (429)
.+..|+|||.+++.++.. +.+++++++||+|||++++.++..+ .+++|||||. +++.||.++|.+| +
T Consensus 90 ~~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~ 157 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--G 157 (472)
T ss_dssp CCCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--C
T ss_pred CCCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--C
Confidence 356899999999987653 4569999999999999998887654 4689999999 9999999999994 4
Q ss_pred Cc-eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEE
Q psy10683 256 LR-AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRL 334 (429)
Q Consensus 256 ~~-~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~ 334 (429)
.. +.++.|... ...+|+|+||+.+......+. ..|++||+||||++.++... ..+..+.+.+++
T Consensus 158 ~~~v~~~~g~~~------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l 222 (472)
T 2fwr_A 158 EEYVGEFSGRIK------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRL 222 (472)
T ss_dssp GGGEEEBSSSCB------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEE
T ss_pred CcceEEECCCcC------------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCCeEE
Confidence 56 777777543 235799999999987665443 35999999999999886654 466677889999
Q ss_pred EEeCCccCCCHHHHHHHHhhhCCCCCCChHHHHhhhcccccCCChhHHHHHHHHhhhhhhhhchhHHhhc-CCCceEEEE
Q psy10683 335 LLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRRLKSEVEKR-LKPKKELKV 413 (429)
Q Consensus 335 ~lTgTP~~n~~~dl~~ll~fl~p~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~lRr~k~~v~~~-LP~~~e~~v 413 (429)
+|||||.+++..+ ..|..++.+.+.++...++... +++.....+
T Consensus 223 ~lSATp~~~~~~~-----------------------------------~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 267 (472)
T 2fwr_A 223 GLTATFEREDGRH-----------------------------------EILKEVVGGKVFELFPDSLAGKHLAKYTIKRI 267 (472)
T ss_dssp EEESCCCCTTSGG-----------------------------------GSHHHHTCCEEEECCHHHHTSCCCCSEEECCE
T ss_pred EEecCccCCCCHH-----------------------------------HHHHHHhCCeEeecCHHHHhcCcCCCeEEEEE
Confidence 9999998644111 2345667777777777777543 788888889
Q ss_pred EEcCCHHHHHHHHHh
Q psy10683 414 YVGLSKMQREWYTKV 428 (429)
Q Consensus 414 ~v~~s~~Q~~~Y~~i 428 (429)
.+.+++.++..|+.+
T Consensus 268 ~~~~~~~~~~~~~~~ 282 (472)
T 2fwr_A 268 FVPLAEDERVEYEKR 282 (472)
T ss_dssp EECCCHHHHHHTTTT
T ss_pred EcCCCHHHHHHHHHH
Confidence 999999999988754
No 7
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.83 E-value=1.6e-20 Score=178.07 Aligned_cols=163 Identities=15% Similarity=0.190 Sum_probs=121.1
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC--C
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP--T 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~--~ 255 (429)
..|+|||.+++.+++. +.+++++++||+|||++++.++..... ...+++|||||. +++.||.+++.++.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLE--NYEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHH--HCSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 4899999999998776 356899999999999999887765443 223489999998 788999999999864 3
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-cCCcEE
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-KTTNRL 334 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~~~~r~ 334 (429)
..+..+.+...... ......+|+|+||+.+.+..... ...+++||+||||++.+. .....+..+ .+.+++
T Consensus 186 ~~~~~~~~~~~~~~------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 186 AMIKKIGGGASKDD------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKF 256 (282)
T ss_dssp GGEEECSTTCSSTT------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEE
T ss_pred ceEEEEeCCCcchh------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEE
Confidence 45555555432211 22256789999999987654322 236799999999999753 455566666 678899
Q ss_pred EEeCCccCCCHHHHHHHHhhhCC
Q psy10683 335 LLTGTPLQNNLHELWALLNFLLP 357 (429)
Q Consensus 335 ~lTgTP~~n~~~dl~~ll~fl~p 357 (429)
+|||||.. ...+++.++.++.|
T Consensus 257 ~lSATp~~-~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 257 GLSGSLRD-GKANIMQYVGMFGE 278 (282)
T ss_dssp EECSSCCT-TSTTHHHHHHHHCE
T ss_pred EEeCCCCC-cchHHHHHHHhcCC
Confidence 99999964 45677777777654
No 8
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.80 E-value=4.5e-19 Score=163.78 Aligned_cols=144 Identities=19% Similarity=0.252 Sum_probs=110.3
Q ss_pred ccCCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC
Q psy10683 176 IKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP 254 (429)
Q Consensus 176 ~~~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~ 254 (429)
..+..|++||.+++..++. +.++++++++|+|||.+++.++..+ .+++|||||. .++.||.+++.+ +
T Consensus 89 ~~~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~-~- 156 (237)
T 2fz4_A 89 DAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGI-F- 156 (237)
T ss_dssp CCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGG-G-
T ss_pred cCCCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHh-C-
Confidence 3457899999999986543 4568999999999999998877543 5689999999 888999999999 4
Q ss_pred CCc-eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcE
Q psy10683 255 TLR-AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNR 333 (429)
Q Consensus 255 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r 333 (429)
+.. +..+.|... ...+|+|+||+.+......+. ..|++|||||||++.+.. ..+.+..+.+.++
T Consensus 157 ~~~~v~~~~g~~~------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~~~~~ 221 (237)
T 2fz4_A 157 GEEYVGEFSGRIK------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQMSIAPFR 221 (237)
T ss_dssp CGGGEEEESSSCB------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHHTCCCSEE
T ss_pred CCCeEEEEeCCCC------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHHhccCCEE
Confidence 455 777776543 245799999999987765443 368999999999997654 3345666788999
Q ss_pred EEEeCCccCCCHH
Q psy10683 334 LLLTGTPLQNNLH 346 (429)
Q Consensus 334 ~~lTgTP~~n~~~ 346 (429)
++|||||.+++-.
T Consensus 222 l~LSATp~r~D~~ 234 (237)
T 2fz4_A 222 LGLTATFEREDGR 234 (237)
T ss_dssp EEEEESCC-----
T ss_pred EEEecCCCCCCCC
Confidence 9999999987644
No 9
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.78 E-value=4.4e-19 Score=185.41 Aligned_cols=162 Identities=17% Similarity=0.240 Sum_probs=106.1
Q ss_pred CCCChHHHHHHHHHHHHHHhcCC-CeEeecCCCCCHHHHHHHHHHHHhhhc------ccCCCeEEEecc-chHHHHH-HH
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGI-NGILADEMGLGKTLQTISLLGYMKHYR------NIAGPHIVIVPK-STLLNWM-NE 248 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~-~~ilad~~GlGKT~~~i~~~~~l~~~~------~~~~~~LIV~P~-~ll~qW~-~e 248 (429)
+..|+|||.+|+.+++..+.++. +++++++||+|||++++.++..+.... ...+++|||||. .|..||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 45899999999999998887764 479999999999999999887776532 156789999994 8889999 78
Q ss_pred HHhhcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh------hhhhccCceEEEecCcccccCch-hHH
Q psy10683 249 FKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER------GVFKKFNWRYLVIDEAHRIKNEK-SKL 321 (429)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~------~~l~~~~~~~vIiDEaH~~kn~~-s~~ 321 (429)
|..+.+. +..+.+. ......+|+|+||+.+.... ..+....|++||+||||++.+.. +..
T Consensus 256 ~~~~~~~--~~~~~~~-----------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~ 322 (590)
T 3h1t_A 256 FTPFGDA--RHKIEGG-----------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNW 322 (590)
T ss_dssp CTTTCSS--EEECCC-------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------C
T ss_pred HHhcchh--hhhhhcc-----------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHH
Confidence 8877543 2222211 12246789999999987653 23334468999999999997643 344
Q ss_pred HHHHHhccCCcEEEEeCCccCCCHHHHHHHH
Q psy10683 322 SEIVREFKTTNRLLLTGTPLQNNLHELWALL 352 (429)
Q Consensus 322 ~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll 352 (429)
...+..+....+++|||||..+...+++.++
T Consensus 323 ~~il~~~~~~~~l~lTATP~~~~~~~~~~~f 353 (590)
T 3h1t_A 323 REILEYFEPAFQIGMTATPLREDNRDTYRYF 353 (590)
T ss_dssp HHHHHHSTTSEEEEEESSCSCTTTHHHHHHS
T ss_pred HHHHHhCCcceEEEeccccccccchhHHHHc
Confidence 5566677888999999999999888776655
No 10
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.77 E-value=1.1e-18 Score=179.24 Aligned_cols=165 Identities=14% Similarity=0.176 Sum_probs=122.5
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhh--cCC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKW--CPT 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~--~~~ 255 (429)
..|+|||.+++.+++. +.+++++++||+|||++++..+...... ..+++|||||. .|..||.++|.++ .+.
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 3899999999998875 3678999999999999998776655432 23489999998 7889999999998 555
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-cCCcEE
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-KTTNRL 334 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~~~~r~ 334 (429)
..+..+.|....... ..+..+|+|+||+.+.+.... .-.+|++|||||||++.+ ......+..+ .+..++
T Consensus 186 ~~v~~~~~~~~~~~~------~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~~~--~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 186 AMIKKIGGGASKDDK------YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATG--KSISSIISGLNNCMFKF 256 (510)
T ss_dssp GGEEECGGGCCTTGG------GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGCCH--HHHHHHGGGCTTCCEEE
T ss_pred cceEEEecCCccccc------cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCCCc--ccHHHHHHhcccCcEEE
Confidence 677777765433211 235678999999988765322 223689999999999976 3344555666 677899
Q ss_pred EEeCCccCCCHHHHHHHHhhhCCCC
Q psy10683 335 LLTGTPLQNNLHELWALLNFLLPDI 359 (429)
Q Consensus 335 ~lTgTP~~n~~~dl~~ll~fl~p~~ 359 (429)
+||||| .++..+++.+..++.+..
T Consensus 257 ~lSATp-~~~~~~~~~~~~~~~~~~ 280 (510)
T 2oca_A 257 GLSGSL-RDGKANIMQYVGMFGEIF 280 (510)
T ss_dssp EEESCG-GGCSSCHHHHHHHHCSEE
T ss_pred EEEeCC-CCCcccHHHhHHhhCCeE
Confidence 999999 455555666666665543
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.76 E-value=5.7e-18 Score=174.90 Aligned_cols=172 Identities=13% Similarity=0.139 Sum_probs=122.4
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcc--cCCCeEEEecc-chHHHHHHHHHhhcC-
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRN--IAGPHIVIVPK-STLLNWMNEFKKWCP- 254 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~--~~~~~LIV~P~-~ll~qW~~e~~~~~~- 254 (429)
..|+|||.+++.+++ .+.+++++++||+|||++++..+........ ..+++|||||. .+..||.+++.++++
T Consensus 3 ~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 478999999999876 4678999999999999998877765544222 16689999999 899999999999986
Q ss_pred -CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--h-hccCceEEEecCcccccCchhHHHHHHHhc--
Q psy10683 255 -TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--F-KKFNWRYLVIDEAHRIKNEKSKLSEIVREF-- 328 (429)
Q Consensus 255 -~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l-~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-- 328 (429)
++++..++|............ ...+|+|+|++.+...... + .-..|++||+||||++.+...........+
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 155 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHII---EDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDH 155 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHH---HHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHHHh---cCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHh
Confidence 678888888764332110000 2468999999999876543 2 234588999999999987654222111211
Q ss_pred -------cCCcEEEEeCCccCCC-------HHHHHHHHhhhCC
Q psy10683 329 -------KTTNRLLLTGTPLQNN-------LHELWALLNFLLP 357 (429)
Q Consensus 329 -------~~~~r~~lTgTP~~n~-------~~dl~~ll~fl~p 357 (429)
...++++|||||..++ ...+..+...+..
T Consensus 156 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~ 198 (555)
T 3tbk_A 156 KLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDA 198 (555)
T ss_dssp HTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTC
T ss_pred hhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCC
Confidence 2357999999999876 3444445555553
No 12
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.75 E-value=4.5e-18 Score=175.88 Aligned_cols=159 Identities=15% Similarity=0.189 Sum_probs=112.8
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcc--cCCCeEEEecc-chHHHHHHHHHhhcC-
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRN--IAGPHIVIVPK-STLLNWMNEFKKWCP- 254 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~--~~~~~LIV~P~-~ll~qW~~e~~~~~~- 254 (429)
..|+|||.+++.+++. +.+++++++||+|||++++..+........ ..+++|||||. .+..||.+++.++++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4789999999988763 678999999999999998877755544222 16688999998 899999999999986
Q ss_pred -CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--h-hccCceEEEecCcccccCchhHHHHHHHhc--
Q psy10683 255 -TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--F-KKFNWRYLVIDEAHRIKNEKSKLSEIVREF-- 328 (429)
Q Consensus 255 -~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l-~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-- 328 (429)
++++..++|............ ...+|+|+|++.+...... + ....|++||+||||++.+... ....+..+
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~ 157 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVI---EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 157 (556)
T ss_dssp GTCCEEECCCC-----CHHHHH---HHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhHHHhh---CCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHHH
Confidence 678888888764322111100 2468999999999876533 3 334689999999999987654 22222221
Q ss_pred -------cCCcEEEEeCCccCCCH
Q psy10683 329 -------KTTNRLLLTGTPLQNNL 345 (429)
Q Consensus 329 -------~~~~r~~lTgTP~~n~~ 345 (429)
...++++|||||..++.
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~ 181 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNA 181 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTC
T ss_pred hhhcccCCCCeEEEEeCCcccCch
Confidence 23679999999987653
No 13
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.75 E-value=7.9e-18 Score=181.79 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=114.1
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcc--cCCCeEEEecc-chHHHHHHHHHhhcC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRN--IAGPHIVIVPK-STLLNWMNEFKKWCP 254 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~--~~~~~LIV~P~-~ll~qW~~e~~~~~~ 254 (429)
...|+|||.+++.++.. +.++|++++||+|||++++..+........ ..+++|||||. .++.||.++|.++++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 46899999999987753 678999999999999998877765544222 16789999997 699999999999987
Q ss_pred --CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--h-hccCceEEEecCcccccCchhHHHHHHHhc-
Q psy10683 255 --TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--F-KKFNWRYLVIDEAHRIKNEKSKLSEIVREF- 328 (429)
Q Consensus 255 --~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l-~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l- 328 (429)
++++..++|........... ...++|+|+|++.+...... + ....|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~ 397 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKV---IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (797)
T ss_dssp GGTCCEEEECCC-----CHHHH---HHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHh---hCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 78888898877433211111 13578999999999876432 2 233579999999999987544 22222222
Q ss_pred --------cCCcEEEEeCCccCCC
Q psy10683 329 --------KTTNRLLLTGTPLQNN 344 (429)
Q Consensus 329 --------~~~~r~~lTgTP~~n~ 344 (429)
...++++|||||.+++
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~ 421 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGN 421 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTT
T ss_pred HHhhccCCCCCeEEEEcCCccccc
Confidence 2367999999998754
No 14
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.74 E-value=8e-18 Score=184.16 Aligned_cols=164 Identities=15% Similarity=0.170 Sum_probs=115.8
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcc--cCCCeEEEecc-chHHHHHHHHHhhcC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRN--IAGPHIVIVPK-STLLNWMNEFKKWCP 254 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~--~~~~~LIV~P~-~ll~qW~~e~~~~~~ 254 (429)
...|+|||.+++.+++. +.++|++++||+|||++++..+........ ..+++|||||. .++.||.+++.++++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 46899999999998853 678999999999999998777755443221 16789999997 699999999999986
Q ss_pred --CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--h-hccCceEEEecCcccccCchhHHHHHHHhc-
Q psy10683 255 --TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--F-KKFNWRYLVIDEAHRIKNEKSKLSEIVREF- 328 (429)
Q Consensus 255 --~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l-~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l- 328 (429)
++++..++|........... ...++|+|+|++.+...... + ....|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~---~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~ 397 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKV---IEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (936)
T ss_dssp TTTCCEEEECCC-----CCHHH---HHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHHh---ccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 68888888876433210000 12468999999999876432 2 223579999999999987654 33322222
Q ss_pred --------cCCcEEEEeCCccCCCHHHHH
Q psy10683 329 --------KTTNRLLLTGTPLQNNLHELW 349 (429)
Q Consensus 329 --------~~~~r~~lTgTP~~n~~~dl~ 349 (429)
...++++|||||.+++..++.
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~~~~~~~l~ 426 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIE 426 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCCCTTCCSHH
T ss_pred HHhhccCCCcCeEEEecCCcccccchhHH
Confidence 226799999999887654433
No 15
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.74 E-value=1.3e-17 Score=177.65 Aligned_cols=172 Identities=15% Similarity=0.134 Sum_probs=121.5
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcc--cCCCeEEEecc-chHHHHHHHHHhhcC-
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRN--IAGPHIVIVPK-STLLNWMNEFKKWCP- 254 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~--~~~~~LIV~P~-~ll~qW~~e~~~~~~- 254 (429)
..|+|||.+++.+++. +.++|++++||+|||++++..+........ ..+++|||+|. +++.||.+++.++++
T Consensus 12 ~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 5799999999998764 678999999999999998877765443222 22689999997 999999999999986
Q ss_pred -CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--h-hccCceEEEecCcccccCchhHHHHH---HHh
Q psy10683 255 -TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--F-KKFNWRYLVIDEAHRIKNEKSKLSEI---VRE 327 (429)
Q Consensus 255 -~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l-~~~~~~~vIiDEaH~~kn~~s~~~~~---~~~ 327 (429)
++++..++|....+....... ...+|+|+|++.+...... + ....|++|||||||++.+.......+ +..
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~---~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~ 164 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIV---ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQ 164 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHH---HTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred CCceEEEEeCCccccccHHHhc---cCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHH
Confidence 678888888653221111001 2478999999999876542 2 34468999999999998765322222 111
Q ss_pred -c-----cCCcEEEEeCCccCC-------CHHHHHHHHhhhCC
Q psy10683 328 -F-----KTTNRLLLTGTPLQN-------NLHELWALLNFLLP 357 (429)
Q Consensus 328 -l-----~~~~r~~lTgTP~~n-------~~~dl~~ll~fl~p 357 (429)
+ ...++++|||||..+ ...+++.++..++.
T Consensus 165 ~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~ 207 (696)
T 2ykg_A 165 KLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDA 207 (696)
T ss_dssp HHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTC
T ss_pred hhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCC
Confidence 1 457789999999844 34555555554443
No 16
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.71 E-value=1.8e-16 Score=142.71 Aligned_cols=161 Identities=16% Similarity=0.162 Sum_probs=112.8
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhh---cccCCCeEEEecc-chHHHHHHHHHhhcCC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHY---RNIAGPHIVIVPK-STLLNWMNEFKKWCPT 255 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~---~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~ 255 (429)
.++|||.+++..+.. +.++++..++|+|||++++..+...... ......+|||||. .+..||.+++.++++.
T Consensus 23 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 789999999987654 6789999999999999865544332211 1235678999999 8889999999999988
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCc--hhHHHHHHHhcc-C
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNE--KSKLSEIVREFK-T 330 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~l~-~ 330 (429)
.++..++|.......... .. ...+|+|+|++.+...... +.-..+++||+||||++.+. .......+..+. .
T Consensus 99 ~~~~~~~~~~~~~~~~~~-~~--~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 175 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEA-LL--RGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 175 (207)
T ss_dssp SCEEEECSSSCSHHHHHH-HH--HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ceEEEEECCCChHHHHHH-hh--CCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCcc
Confidence 888888876543222111 11 2468999999988655332 23346889999999998433 333444555554 4
Q ss_pred CcEEEEeCCccCCCHHHH
Q psy10683 331 TNRLLLTGTPLQNNLHEL 348 (429)
Q Consensus 331 ~~r~~lTgTP~~n~~~dl 348 (429)
...+++|||+- +.+.++
T Consensus 176 ~~~i~~SAT~~-~~~~~~ 192 (207)
T 2gxq_A 176 RQTLLFSATLP-SWAKRL 192 (207)
T ss_dssp SEEEEECSSCC-HHHHHH
T ss_pred CeEEEEEEecC-HHHHHH
Confidence 56799999983 334443
No 17
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=178.02 Aligned_cols=172 Identities=20% Similarity=0.228 Sum_probs=119.3
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc---ccCCCeEEEecc-chHHHH-HHHHHhhc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR---NIAGPHIVIVPK-STLLNW-MNEFKKWC 253 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~---~~~~~~LIV~P~-~ll~qW-~~e~~~~~ 253 (429)
..|+|||.+++.+++. +.++|++++||+|||++++..+..+.... +..+++|||+|. +|+.|| .++|.+++
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 5799999999998875 67899999999999999888776544322 223789999998 588999 99999999
Q ss_pred CC-CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHh--------hhhhccCceEEEecCcccccCch---hHH
Q psy10683 254 PT-LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER--------GVFKKFNWRYLVIDEAHRIKNEK---SKL 321 (429)
Q Consensus 254 ~~-~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~--------~~l~~~~~~~vIiDEaH~~kn~~---s~~ 321 (429)
+. +++..++|........... .+..+|+|+|++.+.... ..+....|++|||||||++.... ...
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~~~---~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFPEV---VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp TTTSCEEEEC----CCCCHHHH---HHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred CcCceEEEEeCCcchhhHHHhh---hcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 77 8888888875432110000 035789999999998654 22344578999999999984422 111
Q ss_pred HHHHHh-c-------------cCCcEEEEeCCccCCC-------HHHHHHHHhhhCC
Q psy10683 322 SEIVRE-F-------------KTTNRLLLTGTPLQNN-------LHELWALLNFLLP 357 (429)
Q Consensus 322 ~~~~~~-l-------------~~~~r~~lTgTP~~n~-------~~dl~~ll~fl~p 357 (429)
...+.. + ....+++|||||..++ ..++..++..+.+
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~ 215 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDA 215 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCC
Confidence 111211 1 4467899999999862 3455556666666
No 18
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.71 E-value=2.3e-16 Score=143.53 Aligned_cols=162 Identities=10% Similarity=0.145 Sum_probs=111.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc---CC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC---PT 255 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~---~~ 255 (429)
.++|||.+++..+.. +.++++.+++|+|||+.++..+...........++|||||. .+..||.+++.++. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 589999999987764 57799999999999998776665443322234479999998 88899999999886 46
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCch---hHHHHHHHhcc-
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNEK---SKLSEIVREFK- 329 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~---s~~~~~~~~l~- 329 (429)
.++..++|........ ... ..+..+|+|+|++.+...... +.-..+++||+||||++.... ......+..+.
T Consensus 112 ~~v~~~~g~~~~~~~~-~~~-~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 189 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDE-EVL-KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 189 (220)
T ss_dssp CCEEEESCCSCHHHHH-HHH-HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS
T ss_pred ceEEEEeCCCChHHHH-HHH-hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC
Confidence 7888888865433221 111 113468999999998764332 233467899999999985421 22333344443
Q ss_pred CCcEEEEeCCccCCCHHHH
Q psy10683 330 TTNRLLLTGTPLQNNLHEL 348 (429)
Q Consensus 330 ~~~r~~lTgTP~~n~~~dl 348 (429)
....+++||||-.+ ..++
T Consensus 190 ~~~~i~~SAT~~~~-~~~~ 207 (220)
T 1t6n_A 190 EKQVMMFSATLSKE-IRPV 207 (220)
T ss_dssp SSEEEEEESCCCTT-THHH
T ss_pred cCeEEEEEeecCHH-HHHH
Confidence 45789999999543 4443
No 19
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.68 E-value=6.2e-16 Score=140.72 Aligned_cols=162 Identities=17% Similarity=0.132 Sum_probs=112.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC----
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP---- 254 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~---- 254 (429)
.++|+|.+++..+.. +.++++..++|+|||+.++..+............+|||||. .+..||.+++.++..
T Consensus 26 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 689999999987764 67899999999999998655443332223345678999998 788999999988864
Q ss_pred --CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCc--hhHHHHHHHhc
Q psy10683 255 --TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNE--KSKLSEIVREF 328 (429)
Q Consensus 255 --~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~l 328 (429)
...+..+.|....... ........+|+|+|++.+...... +.-..+++||+||||++.+. .......+..+
T Consensus 102 ~~~~~~~~~~g~~~~~~~---~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 178 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKA---LEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 178 (219)
T ss_dssp GGCCCEEEECCCSHHHHT---TCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred ccceEEEEEeCCCCHHHH---HHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhC
Confidence 4566777776543321 111124678999999998764322 22335789999999998543 23445555666
Q ss_pred c-CCcEEEEeCCccCCCHHHHH
Q psy10683 329 K-TTNRLLLTGTPLQNNLHELW 349 (429)
Q Consensus 329 ~-~~~r~~lTgTP~~n~~~dl~ 349 (429)
. ....+++|||+ .+.+.++.
T Consensus 179 ~~~~~~l~~SAT~-~~~~~~~~ 199 (219)
T 1q0u_A 179 PKDLQMLVFSATI-PEKLKPFL 199 (219)
T ss_dssp CTTCEEEEEESCC-CGGGHHHH
T ss_pred CcccEEEEEecCC-CHHHHHHH
Confidence 4 45689999997 44444443
No 20
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.68 E-value=8.7e-16 Score=138.14 Aligned_cols=155 Identities=16% Similarity=0.156 Sum_probs=109.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC---C
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP---T 255 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~---~ 255 (429)
.++|||.+++..+. .+.+.++..++|+|||+.++..+...........++|||||. .+..||.+++.++.. +
T Consensus 25 ~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 68999999998765 367899999999999987765443332223334579999998 777899999988763 5
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCch--hHHHHHHHhcc-C
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNEK--SKLSEIVREFK-T 330 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~l~-~ 330 (429)
..+..+.|.......... .....+|+|+|++.+...... +.-..+++||+||||++.... ......+..+. .
T Consensus 101 ~~~~~~~g~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 177 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMR---LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp CCEEEECSSSCHHHHHHH---TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred ceEEEEeCCccHHHHHHh---cCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCcc
Confidence 677778776654433211 124678999999998655432 223367899999999985532 33344455554 5
Q ss_pred CcEEEEeCCcc
Q psy10683 331 TNRLLLTGTPL 341 (429)
Q Consensus 331 ~~r~~lTgTP~ 341 (429)
...+++|||+-
T Consensus 178 ~~~l~~SAT~~ 188 (206)
T 1vec_A 178 RQILLYSATFP 188 (206)
T ss_dssp CEEEEEESCCC
T ss_pred ceEEEEEeeCC
Confidence 67899999983
No 21
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=144.69 Aligned_cols=155 Identities=21% Similarity=0.239 Sum_probs=101.0
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc---ccCCCeEEEecc-chHHH-HHHHHHhh
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR---NIAGPHIVIVPK-STLLN-WMNEFKKW 252 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~---~~~~~~LIV~P~-~ll~q-W~~e~~~~ 252 (429)
...|+|||.+++..++. +.++++.+++|+|||++++..+..+.... ....++|||||. .+..| |.+++.++
T Consensus 31 ~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 45899999999987763 67899999999999999988776543321 235689999999 66788 98999988
Q ss_pred cC-CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--------hhccCceEEEecCcccccCchh--HH
Q psy10683 253 CP-TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--------FKKFNWRYLVIDEAHRIKNEKS--KL 321 (429)
Q Consensus 253 ~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--------l~~~~~~~vIiDEaH~~kn~~s--~~ 321 (429)
.+ ...+..+.|............ ...+|+|+|++.+...... +....|++||+||||++..... ..
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~ 183 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPEVV---KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 183 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHHHH---HHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHH
T ss_pred hccCceEEEEeCCcccchhHHhhc---cCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHH
Confidence 75 467777776543221100000 2468999999999766443 2234688999999999854322 11
Q ss_pred H-HHHHhc--------------cCCcEEEEeCC
Q psy10683 322 S-EIVREF--------------KTTNRLLLTGT 339 (429)
Q Consensus 322 ~-~~~~~l--------------~~~~r~~lTgT 339 (429)
. ..+... ...+.++||||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 184 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 1 111111 45678999998
No 22
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.67 E-value=1.4e-15 Score=139.55 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=109.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHH-HHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc---C
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS-LLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC---P 254 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~-~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~---~ 254 (429)
.++|||.+++..+. .+.+.++..++|+|||+..+. ++..+.. .....++|||||. .+..||.+++.++. +
T Consensus 46 ~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 120 (230)
T 2oxc_A 46 RPSPVQLKAIPLGR----CGLDLIVQAKSGTGKTCVFSTIALDSLVL-ENLSTQILILAPTREIAVQIHSVITAIGIKME 120 (230)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHh-cCCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 58999999998765 367899999999999998543 3333322 3345688999998 88899999999886 3
Q ss_pred CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCc---hhHHHHHHHhcc
Q psy10683 255 TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNE---KSKLSEIVREFK 329 (429)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~---~s~~~~~~~~l~ 329 (429)
+.++..+.|......... . ....+|+|+|++.+..... .+....+++||+||||++... .......+..+.
T Consensus 121 ~~~~~~~~g~~~~~~~~~-~---~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~ 196 (230)
T 2oxc_A 121 GLECHVFIGGTPLSQDKT-R---LKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP 196 (230)
T ss_dssp TCCEEEECTTSCHHHHHH-H---TTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEeCCCCHHHHHH-h---ccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCC
Confidence 678888888654432211 1 1357899999999876532 222335789999999998543 334445556665
Q ss_pred -CCcEEEEeCCc
Q psy10683 330 -TTNRLLLTGTP 340 (429)
Q Consensus 330 -~~~r~~lTgTP 340 (429)
....+++|||+
T Consensus 197 ~~~~~l~lSAT~ 208 (230)
T 2oxc_A 197 ASKQMLAVSATY 208 (230)
T ss_dssp SSCEEEEEESCC
T ss_pred CCCeEEEEEecc
Confidence 45679999996
No 23
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.67 E-value=2.3e-15 Score=138.56 Aligned_cols=154 Identities=17% Similarity=0.249 Sum_probs=109.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHH-HHhhh---cccCCCeEEEecc-chHHHHHHHHHhhcC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG-YMKHY---RNIAGPHIVIVPK-STLLNWMNEFKKWCP 254 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~-~l~~~---~~~~~~~LIV~P~-~ll~qW~~e~~~~~~ 254 (429)
.++|+|.+++..+. .+.+.++..++|+|||++++..+. .+... ......+|||||. .+..||.+++.++..
T Consensus 47 ~~~~~Q~~~i~~~~----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 47 LVTEIQKQTIGLAL----QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp BCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh----CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 68999999998775 367899999999999998665443 33221 1335578999998 888999999999875
Q ss_pred C--CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh---hhccCceEEEecCcccccCc--hhHHHHHHHh
Q psy10683 255 T--LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV---FKKFNWRYLVIDEAHRIKNE--KSKLSEIVRE 327 (429)
Q Consensus 255 ~--~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~ 327 (429)
. ..+..++|......... .. ...+|+|+|++.+...... +....+++||+||||++.+. .......+..
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~-~~---~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAE-RI---NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIEN 198 (236)
T ss_dssp TSSCCEEEECCC--CHHHHH-HH---TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHT
T ss_pred CCCeeEEEEECCCCHHHHHH-hC---CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHh
Confidence 4 67777777654432211 11 4678999999999765432 33346889999999998543 3445555666
Q ss_pred cc-CCcEEEEeCCcc
Q psy10683 328 FK-TTNRLLLTGTPL 341 (429)
Q Consensus 328 l~-~~~r~~lTgTP~ 341 (429)
+. ...++++|||+-
T Consensus 199 ~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 199 LPKKRQTLLFSATQT 213 (236)
T ss_dssp SCTTSEEEEEESSCC
T ss_pred CCCCCeEEEEEeeCC
Confidence 64 445799999973
No 24
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.66 E-value=2.1e-15 Score=140.11 Aligned_cols=156 Identities=18% Similarity=0.195 Sum_probs=110.2
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC--C
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP--T 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~--~ 255 (429)
..++++|.+++..+. .+.+.++..++|+|||++++..+............+|||+|. .+..||.+++.++.. +
T Consensus 64 ~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 64 TKPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 378999999998765 467899999999999998765544332223344578999999 778999999998864 5
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh---hhccCceEEEecCcccccCc--hhHHHHHHHhcc-
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV---FKKFNWRYLVIDEAHRIKNE--KSKLSEIVREFK- 329 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~l~- 329 (429)
.++..+.|........... ....+|+|+|++.+...... +.-..+++||+||||++.+. .......+..+.
T Consensus 140 ~~~~~~~g~~~~~~~~~~~---~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~ 216 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSLAL---AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 216 (249)
T ss_dssp CCEEEECTTSCHHHHHHHH---HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS
T ss_pred eeEEEEECCCChHHHHHHh---cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCC
Confidence 6777777765433221111 14678999999998765432 22335789999999998543 233445555554
Q ss_pred CCcEEEEeCCcc
Q psy10683 330 TTNRLLLTGTPL 341 (429)
Q Consensus 330 ~~~r~~lTgTP~ 341 (429)
....+++|||+-
T Consensus 217 ~~~~l~~SAT~~ 228 (249)
T 3ber_A 217 DRKTFLFSATMT 228 (249)
T ss_dssp SSEEEEEESSCC
T ss_pred CCeEEEEeccCC
Confidence 566799999984
No 25
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.66 E-value=1.4e-15 Score=150.07 Aligned_cols=158 Identities=11% Similarity=0.148 Sum_probs=111.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc---CC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC---PT 255 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~---~~ 255 (429)
.|+|||.+++.++.. +.++++.++||+|||++++..+...........++|||||. .+..||.+++.++. ++
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 589999999987654 67899999999999998866655443323345689999998 88899999999886 46
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCchhH---HHHHHHhc-c
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNEKSK---LSEIVREF-K 329 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s~---~~~~~~~l-~ 329 (429)
.++..+.|......... ....+..+|+|+|++.+...... +....+++||+||||++.+.... ....+..+ .
T Consensus 106 ~~~~~~~g~~~~~~~~~--~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~ 183 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEE--VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183 (391)
T ss_dssp CCEEEECTTSCHHHHHH--HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCS
T ss_pred eEEEEEeCCCCHHHHHH--HHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCC
Confidence 78888888654332211 11114468999999999765332 33347889999999999663222 22223333 3
Q ss_pred CCcEEEEeCCccCC
Q psy10683 330 TTNRLLLTGTPLQN 343 (429)
Q Consensus 330 ~~~r~~lTgTP~~n 343 (429)
....+++||||-..
T Consensus 184 ~~~~i~~SAT~~~~ 197 (391)
T 1xti_A 184 EKQVMMFSATLSKE 197 (391)
T ss_dssp SSEEEEEESSCCST
T ss_pred CceEEEEEeeCCHH
Confidence 55689999998654
No 26
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.66 E-value=2.1e-15 Score=137.54 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=104.5
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC--C
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP--T 255 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~--~ 255 (429)
.++|||.+++..+. .+.++++..++|+|||+++ +.++..+.. ......+|||||. .+..||.+++.++.. +
T Consensus 36 ~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (224)
T 1qde_A 36 EPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDT-SVKAPQALMLAPTRELALQIQKVVMALAFHMD 110 (224)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCT-TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhc-cCCCceEEEEECCHHHHHHHHHHHHHHhcccC
Confidence 68999999998765 3678999999999999884 444444332 3345689999999 778999999999875 4
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCc--hhHHHHHHHhcc-C
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNE--KSKLSEIVREFK-T 330 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~l~-~ 330 (429)
..+..+.|....... .......+|+|+|++.+...... +....+++||+||||++... .......+..+. .
T Consensus 111 ~~~~~~~g~~~~~~~----~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~ 186 (224)
T 1qde_A 111 IKVHACIGGTSFVED----AEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 186 (224)
T ss_dssp CCEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred ceEEEEeCCcchHHH----HhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCcc
Confidence 666777775543221 11123478999999998655332 22335789999999997442 333445555553 4
Q ss_pred CcEEEEeCCcc
Q psy10683 331 TNRLLLTGTPL 341 (429)
Q Consensus 331 ~~r~~lTgTP~ 341 (429)
...+++|||+-
T Consensus 187 ~~~i~lSAT~~ 197 (224)
T 1qde_A 187 TQVVLLSATMP 197 (224)
T ss_dssp CEEEEEESSCC
T ss_pred CeEEEEEeecC
Confidence 55799999984
No 27
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.65 E-value=1.6e-15 Score=148.03 Aligned_cols=156 Identities=16% Similarity=0.219 Sum_probs=111.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC--CC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP--TL 256 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~--~~ 256 (429)
.++|+|.+++.+++. .+.++++.++||+|||++++..+..... .....++|||||. .+..||.+++.++++ ..
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhc-ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 689999999987764 3357899999999999988766654433 2345678999998 778999999999875 45
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCch--hHHHHHHHhc-cCC
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNEK--SKLSEIVREF-KTT 331 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~l-~~~ 331 (429)
.+....|........ ... ...+|+|+|++.+...... +....+++||+||||++.+.. ......+..+ ...
T Consensus 104 ~v~~~~~~~~~~~~~-~~~---~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~ 179 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQI-KAL---KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK 179 (367)
T ss_dssp CEEEECTTSCHHHHH-HHH---HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSC
T ss_pred eEEEEECCcchHHHH-hhc---CCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCc
Confidence 666677665433221 111 2568999999998765432 233468899999999986644 2233444444 456
Q ss_pred cEEEEeCCccCC
Q psy10683 332 NRLLLTGTPLQN 343 (429)
Q Consensus 332 ~r~~lTgTP~~n 343 (429)
+.+++||||...
T Consensus 180 ~~i~~SAT~~~~ 191 (367)
T 1hv8_A 180 RILLFSATMPRE 191 (367)
T ss_dssp EEEEECSSCCHH
T ss_pred eEEEEeeccCHH
Confidence 679999999654
No 28
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.64 E-value=1.9e-15 Score=139.31 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=104.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC--CC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP--TL 256 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~--~~ 256 (429)
.++|+|.+++..++ .+.+.++..++|+|||+.++..+............+|||+|. .+..||.+++.++.. +.
T Consensus 52 ~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 58999999998765 367899999999999988655444332223345689999998 788999999999875 35
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCccccc--CchhHHHHHHHhcc-CC
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIK--NEKSKLSEIVREFK-TT 331 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~k--n~~s~~~~~~~~l~-~~ 331 (429)
.+....|........ .....+..+|+|+|++.+...... +....+++||+||||++. +....+...+..+. ..
T Consensus 128 ~~~~~~g~~~~~~~~--~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~ 205 (237)
T 3bor_A 128 TCHACIGGTNVRNEM--QKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 205 (237)
T ss_dssp CEEEECC---------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEECCCchHHHH--HHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCC
Confidence 566666654432211 111223478999999987654322 233457899999999974 33444556666664 45
Q ss_pred cEEEEeCCcc
Q psy10683 332 NRLLLTGTPL 341 (429)
Q Consensus 332 ~r~~lTgTP~ 341 (429)
..+++|||+-
T Consensus 206 ~~i~~SAT~~ 215 (237)
T 3bor_A 206 QVVLLSATMP 215 (237)
T ss_dssp EEEEECSSCC
T ss_pred eEEEEEEecC
Confidence 6689999984
No 29
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.63 E-value=1.9e-15 Score=165.06 Aligned_cols=156 Identities=17% Similarity=0.265 Sum_probs=108.9
Q ss_pred CChHHHHHHHHHHHHHHhc----------CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHH
Q psy10683 180 EMRDYQVRGLNWMISLYEN----------GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNE 248 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~----------~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e 248 (429)
.+||||.+|+.+++..+.. +.+|++.+.+|+|||++++.++..+.. .+...++|||||. .|..||.++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~-~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATE-LDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTT-CTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHh-cCCCceEEEEeCcHHHHHHHHHH
Confidence 6999999999999886543 357999999999999999777644432 3344689999995 888999999
Q ss_pred HHhhcCCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh---h-hccCceEEEecCcccccCchhHHHHH
Q psy10683 249 FKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV---F-KKFNWRYLVIDEAHRIKNEKSKLSEI 324 (429)
Q Consensus 249 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~---l-~~~~~~~vIiDEaH~~kn~~s~~~~~ 324 (429)
|.++.+.. + .+... ...+.... .....+|+|+|++.+...... + .-..+.+||+||||++... .....+
T Consensus 350 f~~f~~~~-v---~~~~s-~~~l~~~L-~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~-~~~~~I 422 (1038)
T 2w00_A 350 YQRFSPDS-V---NGSEN-TAGLKRNL-DKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG-EAQKNL 422 (1038)
T ss_dssp HHTTSTTC-S---SSSCC-CHHHHHHH-HCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH-HHHHHH
T ss_pred HHHhcccc-c---ccccC-HHHHHHHh-cCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch-HHHHHH
Confidence 99987642 1 12111 11111111 124578999999999865322 1 1126789999999997532 122334
Q ss_pred HHhccCCcEEEEeCCccCC
Q psy10683 325 VREFKTTNRLLLTGTPLQN 343 (429)
Q Consensus 325 ~~~l~~~~r~~lTgTP~~n 343 (429)
...++...++++||||...
T Consensus 423 ~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 423 KKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHCSSEEEEEEESSCCCS
T ss_pred HHhCCcccEEEEeCCcccc
Confidence 4566778899999999864
No 30
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.63 E-value=2.8e-15 Score=147.95 Aligned_cols=156 Identities=16% Similarity=0.142 Sum_probs=111.0
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC--C
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP--T 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~--~ 255 (429)
..|+|||.+++.++.. +.++++.++||+|||++++..+...........++|||||. .+..||.+++.++.+ +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 3789999999998765 67899999999999998654443333323445689999998 788999999999875 4
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCc--hhHHHHHHHhc-cC
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNE--KSKLSEIVREF-KT 330 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~l-~~ 330 (429)
.++..+.|......... .. ...+|+|+|++.+..... .+....+++||+||||++... .......+..+ ..
T Consensus 118 ~~~~~~~g~~~~~~~~~-~~---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~ 193 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAE-GL---RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 193 (394)
T ss_dssp CCEEEECSSCCHHHHHH-HH---HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred eeEEEEeCCCchHHHHh-hc---CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCC
Confidence 67777777654332211 11 146799999999876543 233447899999999997432 33344455555 44
Q ss_pred CcEEEEeCCccC
Q psy10683 331 TNRLLLTGTPLQ 342 (429)
Q Consensus 331 ~~r~~lTgTP~~ 342 (429)
...+++||||-.
T Consensus 194 ~~~i~~SAT~~~ 205 (394)
T 1fuu_A 194 TQVVLLSATMPN 205 (394)
T ss_dssp CEEEEECSSCCH
T ss_pred ceEEEEEEecCH
Confidence 568999999853
No 31
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.62 E-value=7.8e-15 Score=145.34 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=109.8
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC--CC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP--TL 256 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~--~~ 256 (429)
.|+|||.+++.++.. +.++++.++||+|||++++..+...........++|||||. .+..||.+++.++.+ +.
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 689999999988764 57799999999999998766554443323345579999998 788899999999886 46
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCchhH-HHH-HHHhc-cCC
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNEKSK-LSE-IVREF-KTT 331 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~s~-~~~-~~~~l-~~~ 331 (429)
.+..+.|.......... .....+|+|+|++.+...... ..-..+++||+||||++.+.... ... .+..+ ...
T Consensus 119 ~~~~~~g~~~~~~~~~~---~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~ 195 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDILR---LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 195 (400)
T ss_dssp CEEEECSSSCHHHHHHH---TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSC
T ss_pred eEEEEeCCcchHHHHHH---hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCc
Confidence 67777776654433221 225678999999998654332 23346899999999998664321 122 22223 355
Q ss_pred cEEEEeCCcc
Q psy10683 332 NRLLLTGTPL 341 (429)
Q Consensus 332 ~r~~lTgTP~ 341 (429)
..+++|||+-
T Consensus 196 ~~i~lSAT~~ 205 (400)
T 1s2m_A 196 QSLLFSATFP 205 (400)
T ss_dssp EEEEEESCCC
T ss_pred eEEEEEecCC
Confidence 6799999984
No 32
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.62 E-value=1.1e-14 Score=135.32 Aligned_cols=161 Identities=15% Similarity=0.215 Sum_probs=109.3
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHH-Hhhhc--------ccCCCeEEEecc-chHHHHHHHH
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGY-MKHYR--------NIAGPHIVIVPK-STLLNWMNEF 249 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~-l~~~~--------~~~~~~LIV~P~-~ll~qW~~e~ 249 (429)
.++|+|.+++..+.. +.+.++..++|+|||+.++..+.. +.... .....+|||||. .+..||.+++
T Consensus 45 ~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 689999999987654 678999999999999986654433 32211 123578999999 8889999999
Q ss_pred HhhcCC--CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCc--hhHHHH
Q psy10683 250 KKWCPT--LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNE--KSKLSE 323 (429)
Q Consensus 250 ~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~--~s~~~~ 323 (429)
.++... ..+..++|......... .. ....+|+|+|++.+...... +.-..+++||+||||++.+. ......
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~--~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 197 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIR-EV--QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 197 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHH-HH--SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred HHHhccCCceEEEEECCCCHHHHHH-Hh--CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHH
Confidence 998753 56666777654333211 11 24578999999999765432 22235689999999998543 334444
Q ss_pred HHHhc--c---CCcEEEEeCCccCCCHHHH
Q psy10683 324 IVREF--K---TTNRLLLTGTPLQNNLHEL 348 (429)
Q Consensus 324 ~~~~l--~---~~~r~~lTgTP~~n~~~dl 348 (429)
.+..+ . ....+++||||- +.+.++
T Consensus 198 i~~~~~~~~~~~~q~l~~SAT~~-~~~~~~ 226 (253)
T 1wrb_A 198 IIEESNMPSGINRQTLMFSATFP-KEIQKL 226 (253)
T ss_dssp HHHSSCCCCGGGCEEEEEESSCC-HHHHHH
T ss_pred HHhhccCCCCCCcEEEEEEEeCC-HHHHHH
Confidence 55533 2 345899999973 334443
No 33
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=148.86 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=111.5
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC--C
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP--T 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~--~ 255 (429)
..++|||.+++..++. +.++++.++||+|||++++..+...........++|||+|. .+..||.+++.++.. +
T Consensus 61 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 3689999999987664 67799999999999998766554443333356689999999 688999999998863 4
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCch--hHHHHHHHhc-cC
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNEK--SKLSEIVREF-KT 330 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~l-~~ 330 (429)
..+....|......... .......+|+|+|++.+...... +....+++||+||||++.+.. ......+..+ ..
T Consensus 137 ~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 214 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEVQ--KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSN 214 (414)
T ss_dssp CCEEECCCCTTHHHHHH--HHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTT
T ss_pred ceEEEEECCcchHHHHH--HHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCC
Confidence 55666666554433221 12225678999999998765432 334458899999999985433 3445555555 45
Q ss_pred CcEEEEeCCcc
Q psy10683 331 TNRLLLTGTPL 341 (429)
Q Consensus 331 ~~r~~lTgTP~ 341 (429)
...+++||||-
T Consensus 215 ~~~i~~SAT~~ 225 (414)
T 3eiq_A 215 TQVVLLSATMP 225 (414)
T ss_dssp CEEEEECSCCC
T ss_pred CeEEEEEEecC
Confidence 56799999984
No 34
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.61 E-value=7e-15 Score=146.25 Aligned_cols=155 Identities=15% Similarity=0.153 Sum_probs=109.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC--C
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT--L 256 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~--~ 256 (429)
.++|||.+++.+++. +.++++.++||+|||++++..+...........++|||||. .+..||.+++.++... .
T Consensus 59 ~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 589999999988764 67899999999999998876655443323456789999998 6889999999998743 5
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCch--hHHHHHHHhc-cCC
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNEK--SKLSEIVREF-KTT 331 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~l-~~~ 331 (429)
.+..+.|.......... .. ...+|+|+|++.+..... .+....+++||+||||++.+.. ......+..+ ...
T Consensus 135 ~~~~~~g~~~~~~~~~~-~~--~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 211 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIRK-LD--YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 211 (410)
T ss_dssp CEEEECTTSCHHHHHHH-HH--HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTC
T ss_pred EEEEEECCCCHHHHHHH-hh--cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCc
Confidence 56666665543322111 11 245899999998865533 2334468999999999986644 2333344444 446
Q ss_pred cEEEEeCCcc
Q psy10683 332 NRLLLTGTPL 341 (429)
Q Consensus 332 ~r~~lTgTP~ 341 (429)
..+++||||-
T Consensus 212 ~~i~~SAT~~ 221 (410)
T 2j0s_A 212 QVVLISATLP 221 (410)
T ss_dssp EEEEEESCCC
T ss_pred eEEEEEcCCC
Confidence 7899999984
No 35
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.61 E-value=1.7e-14 Score=133.47 Aligned_cols=155 Identities=18% Similarity=0.155 Sum_probs=103.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHH-HHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC--
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISL-LGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT-- 255 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~-~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~-- 255 (429)
.++|+|.+++..+.. +.+.++..++|+|||+.++.. +..+.........+|||+|. .+..||.+++.+++..
T Consensus 51 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 589999999986653 678899999999999986443 33333222344578999999 7889999999998764
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh----hhccCceEEEecCcccccC-----chhHHHHHHH
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV----FKKFNWRYLVIDEAHRIKN-----EKSKLSEIVR 326 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~----l~~~~~~~vIiDEaH~~kn-----~~s~~~~~~~ 326 (429)
..+..+.|...... .........++|+|+|++.+...... +.-..+.+||+||||++.. ........+.
T Consensus 127 ~~~~~~~~~~~~~~--~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~ 204 (245)
T 3dkp_A 127 FRIHMIHKAAVAAK--KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFL 204 (245)
T ss_dssp CCEECCCHHHHHHT--TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHH
T ss_pred ceEEEEecCccHHH--HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHH
Confidence 34444443322111 11122345679999999998765432 2223578999999999853 2223333444
Q ss_pred hc--cCCcEEEEeCCc
Q psy10683 327 EF--KTTNRLLLTGTP 340 (429)
Q Consensus 327 ~l--~~~~r~~lTgTP 340 (429)
.+ .....+++|||+
T Consensus 205 ~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 205 ACTSHKVRRAMFSATF 220 (245)
T ss_dssp HCCCTTCEEEEEESSC
T ss_pred hcCCCCcEEEEEeccC
Confidence 43 345679999998
No 36
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.60 E-value=1.5e-14 Score=139.62 Aligned_cols=149 Identities=14% Similarity=0.178 Sum_probs=107.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC--CC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP--TL 256 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~--~~ 256 (429)
.|+|||.+++.++. .+.++++.++||+|||++++..+... ..++|||||. .+..||.+++.++.+ +.
T Consensus 16 ~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 16 NFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Confidence 68999999998776 36789999999999999876655431 5679999998 788999999998874 46
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCch--hHHHHHHHhccCCc
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNEK--SKLSEIVREFKTTN 332 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~l~~~~ 332 (429)
.+..++|........ ... ...+|+|+|++.+..... .+....|++||+||||++.+.. ......+..+....
T Consensus 86 ~~~~~~~~~~~~~~~-~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T 2z0m_A 86 KVAEVYGGMPYKAQI-NRV---RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRK 161 (337)
T ss_dssp CEEEECTTSCHHHHH-HHH---TTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCS
T ss_pred cEEEEECCcchHHHH-hhc---CCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCccc
Confidence 677777765433221 111 247899999999976533 2333468899999999985433 33344455555444
Q ss_pred -EEEEeCCccC
Q psy10683 333 -RLLLTGTPLQ 342 (429)
Q Consensus 333 -r~~lTgTP~~ 342 (429)
.+++||||-.
T Consensus 162 ~~~~~SAT~~~ 172 (337)
T 2z0m_A 162 ITGLFSATIPE 172 (337)
T ss_dssp EEEEEESCCCH
T ss_pred EEEEEeCcCCH
Confidence 4578999954
No 37
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.58 E-value=7.6e-15 Score=146.42 Aligned_cols=160 Identities=9% Similarity=0.203 Sum_probs=113.7
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC-CC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP-TL 256 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~-~~ 256 (429)
..++|+|.+++..++ .+.+.++..++|+|||+.++..+.... .....+|||+|. .+..||.+++.++.+ ++
T Consensus 20 ~~~~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SCCCHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 467899999998765 366899999999999995554443332 345688999999 888999999999886 67
Q ss_pred ceEEEeCChhhH--HHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccC-------------chhH-
Q psy10683 257 RAICLIGDQDAR--NAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKN-------------EKSK- 320 (429)
Q Consensus 257 ~~~~~~g~~~~~--~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn-------------~~s~- 320 (429)
++..++|..... ....... ..+..+|+|+|++.+......+....+++||+||||++.. ....
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l-~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~ 171 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSF-EEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 171 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHH-HHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHH
T ss_pred eEEEEECCCChhhHHHHHHHh-hcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHH
Confidence 888888866432 1111111 1245789999999997766666666899999999998632 1122
Q ss_pred HHHHHHhc------------cCCcEEEEeCCccCCCHH
Q psy10683 321 LSEIVREF------------KTTNRLLLTGTPLQNNLH 346 (429)
Q Consensus 321 ~~~~~~~l------------~~~~r~~lTgTP~~n~~~ 346 (429)
....+..+ .....+++||||......
T Consensus 172 ~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~ 209 (414)
T 3oiy_A 172 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR 209 (414)
T ss_dssp HHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSST
T ss_pred HHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhH
Confidence 23333333 445778999997776654
No 38
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.57 E-value=1.4e-14 Score=142.82 Aligned_cols=154 Identities=14% Similarity=0.114 Sum_probs=106.2
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC--C
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP--T 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~--~ 255 (429)
..++|+|.+++..++.. .+.++++.++||+|||++++..+...........++|||||. .+..||.+++.++.. .
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 37899999999877541 237889999999999998876655443333456689999999 688999999998764 3
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCchh--H-HHHHHHhc-c
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNEKS--K-LSEIVREF-K 329 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~s--~-~~~~~~~l-~ 329 (429)
..+....+..... ......+|+|+|++.+..... .+.-..+++||+||||++.+... . .......+ .
T Consensus 104 ~~~~~~~~~~~~~-------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~ 176 (395)
T 3pey_A 104 ITSQLIVPDSFEK-------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176 (395)
T ss_dssp CCEEEESTTSSCT-------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCT
T ss_pred eeEEEEecCchhh-------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCC
Confidence 4555555443221 112357899999999876542 22334689999999999854222 2 22233333 3
Q ss_pred CCcEEEEeCCcc
Q psy10683 330 TTNRLLLTGTPL 341 (429)
Q Consensus 330 ~~~r~~lTgTP~ 341 (429)
....+++||||-
T Consensus 177 ~~~~i~~SAT~~ 188 (395)
T 3pey_A 177 DTQLVLFSATFA 188 (395)
T ss_dssp TCEEEEEESCCC
T ss_pred CcEEEEEEecCC
Confidence 456799999984
No 39
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.57 E-value=6.1e-14 Score=128.24 Aligned_cols=154 Identities=19% Similarity=0.286 Sum_probs=103.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHH-HHHhhh-----cccCCCeEEEecc-chHHHHHHHHHhh
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL-GYMKHY-----RNIAGPHIVIVPK-STLLNWMNEFKKW 252 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~-~~l~~~-----~~~~~~~LIV~P~-~ll~qW~~e~~~~ 252 (429)
.++|+|.+++..+. .+.+.++..++|+|||+.++..+ ..+... ......+|||+|. .+..||.+++.++
T Consensus 42 ~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 78999999998765 46789999999999998865443 222211 1245668999999 6789999999998
Q ss_pred c-CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCc--hhHHHHHHHh
Q psy10683 253 C-PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNE--KSKLSEIVRE 327 (429)
Q Consensus 253 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~ 327 (429)
. .+.++..++|........ ... ....+|+|+|++.+...... +.-..+++||+||||++... .......+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 194 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQI-EDI--SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLD 194 (228)
T ss_dssp CCTTCCEEEECC------CH-HHH--HSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHH
T ss_pred cccCceEEEEECCCChHHHH-HHh--cCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHh
Confidence 6 456777777655432211 111 13478999999998764322 22235789999999997543 3344555566
Q ss_pred cc-CCcEEEEeCCc
Q psy10683 328 FK-TTNRLLLTGTP 340 (429)
Q Consensus 328 l~-~~~r~~lTgTP 340 (429)
+. ....+++|||.
T Consensus 195 ~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 195 VRPDRQTVMTSATW 208 (228)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCcCCeEEEEEeeC
Confidence 64 45678899996
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.55 E-value=7e-14 Score=155.45 Aligned_cols=160 Identities=18% Similarity=0.266 Sum_probs=115.7
Q ss_pred CCCChHHHHHHHHHHHHHHhcCC--CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGI--NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP 254 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~--~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~ 254 (429)
+..++|+|.+++..+...+.++. +++++++||+|||.+++..+..... ....+||+||. .+..||.++|.++++
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEechHHHHHHHHHHHHHHhh
Confidence 45789999999999998877776 7899999999999988754433322 24578999999 577889999998886
Q ss_pred C--CceEEEeCChh--hHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhcc-
Q psy10683 255 T--LRAICLIGDQD--ARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFK- 329 (429)
Q Consensus 255 ~--~~~~~~~g~~~--~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~- 329 (429)
. .++..+.+... .+...... ...+..+|+|+|++.+... +.-.++++|||||+|++.. .....+..+.
T Consensus 678 ~~~i~v~~l~~~~~~~~~~~~~~~-l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g~---~~~~~l~~l~~ 750 (1151)
T 2eyq_A 678 NWPVRIEMISRFRSAKEQTQILAE-VAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFGV---RHKERIKAMRA 750 (1151)
T ss_dssp TTTCCEEEESTTSCHHHHHHHHHH-HHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSCH---HHHHHHHHHHT
T ss_pred cCCCeEEEEeCCCCHHHHHHHHHH-HhcCCCCEEEECHHHHhCC---ccccccceEEEechHhcCh---HHHHHHHHhcC
Confidence 5 45666665432 22222222 2235689999999988543 3334789999999999743 3445556654
Q ss_pred CCcEEEEeCCccCCCHHH
Q psy10683 330 TTNRLLLTGTPLQNNLHE 347 (429)
Q Consensus 330 ~~~r~~lTgTP~~n~~~d 347 (429)
..+.++|||||+.+.+..
T Consensus 751 ~~~vl~lSATp~p~~l~~ 768 (1151)
T 2eyq_A 751 NVDILTLTATPIPRTLNM 768 (1151)
T ss_dssp TSEEEEEESSCCCHHHHH
T ss_pred CCCEEEEcCCCChhhHHH
Confidence 457899999998876543
No 41
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.53 E-value=2.8e-13 Score=126.70 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=106.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHH-HHHhhh---cccCCCeEEEecc-chHHHHHHHHHhhcC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL-GYMKHY---RNIAGPHIVIVPK-STLLNWMNEFKKWCP 254 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~-~~l~~~---~~~~~~~LIV~P~-~ll~qW~~e~~~~~~ 254 (429)
.++|+|.+++..+.. +.+.++..++|+|||+.++..+ ..+... ......+|||+|. .+..||.+++.++..
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 589999999987664 5778999999999999865443 333221 1235678999999 788899999999875
Q ss_pred C--CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh---hhccCceEEEecCcccccCc--hhHHHHHHHh
Q psy10683 255 T--LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV---FKKFNWRYLVIDEAHRIKNE--KSKLSEIVRE 327 (429)
Q Consensus 255 ~--~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~ 327 (429)
. ..+..+.|......... ... ...+|+|+|.+.+...... +.-..+++||+||||++... ...+...+..
T Consensus 152 ~~~~~~~~~~g~~~~~~~~~-~~~--~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEAQ-KLG--NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 228 (262)
T ss_dssp TCCSCEEEECSSSCHHHHHH-HHH--HCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHH
T ss_pred hcCceEEEEECCCCHHHHHH-Hhc--CCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHh
Confidence 3 45566666544332211 111 2378999999988654432 22235789999999997543 3344555556
Q ss_pred cc-CCcEEEEeCCcc
Q psy10683 328 FK-TTNRLLLTGTPL 341 (429)
Q Consensus 328 l~-~~~r~~lTgTP~ 341 (429)
+. ....+++|||+-
T Consensus 229 ~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 229 LPTRRQTMLFSATQT 243 (262)
T ss_dssp SCSSSEEEEECSSCC
T ss_pred CCCCCeEEEEEecCC
Confidence 64 456799999974
No 42
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.53 E-value=2.6e-13 Score=125.33 Aligned_cols=154 Identities=21% Similarity=0.294 Sum_probs=105.0
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHH-HHHhhh----cccCCCeEEEecc-chHHHHHHHHHhhc
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL-GYMKHY----RNIAGPHIVIVPK-STLLNWMNEFKKWC 253 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~-~~l~~~----~~~~~~~LIV~P~-~ll~qW~~e~~~~~ 253 (429)
.++|+|.+++..+.. +.+.++..++|+|||+..+..+ ..+... ......+|||||. .+..||.+.+.++.
T Consensus 51 ~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 588999999987653 6789999999999999865443 333321 1234568999999 77789998888875
Q ss_pred --CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCc--hhHHHHHHHh
Q psy10683 254 --PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNE--KSKLSEIVRE 327 (429)
Q Consensus 254 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~ 327 (429)
.+.++..++|......... ... ...+|+|+|++.+..... .+.-..+++||+||||++... .......+..
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~-~~~--~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIR-DLE--RGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHH-HHH--HCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTT
T ss_pred hhcCceEEEEECCCChHHHHH-Hhc--CCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHh
Confidence 3567777777654332211 111 246899999998865532 222335789999999997543 3334445555
Q ss_pred c-cCCcEEEEeCCc
Q psy10683 328 F-KTTNRLLLTGTP 340 (429)
Q Consensus 328 l-~~~~r~~lTgTP 340 (429)
+ .....+++|||+
T Consensus 204 ~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 204 IRPDRQTLMWSATW 217 (242)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCccceEEEEEeec
Confidence 5 345678999996
No 43
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.50 E-value=7.7e-14 Score=148.63 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=113.0
Q ss_pred CCCChHHHHHHHHHHHHHHhcCC--CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGI--NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP 254 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~--~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~ 254 (429)
+..|+++|.+++..+......+. +.++..++|+|||++++..+..... ....++|++|. .+..||.+++.++++
T Consensus 366 pf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~---~g~qvlvlaPtr~La~Q~~~~l~~~~~ 442 (780)
T 1gm5_A 366 PFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE---AGFQTAFMVPTSILAIQHYRRTVESFS 442 (780)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH---HTSCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhh
Confidence 34799999999999988766654 7899999999999988765544332 24578999999 677899999999986
Q ss_pred --CCceEEEeCChhhHH--HHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHh-cc
Q psy10683 255 --TLRAICLIGDQDARN--AMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE-FK 329 (429)
Q Consensus 255 --~~~~~~~~g~~~~~~--~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~-l~ 329 (429)
+.++..++|...... ..... ...+..+|+|+|++.+... +.-.++++||+||+|++.... . ..+.. ..
T Consensus 443 ~~gi~v~~l~G~~~~~~r~~~~~~-l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q--r-~~l~~~~~ 515 (780)
T 1gm5_A 443 KFNIHVALLIGATTPSEKEKIKSG-LRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ--R-EALMNKGK 515 (780)
T ss_dssp CSSCCEEECCSSSCHHHHHHHHHH-HHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCCSSSS
T ss_pred hcCceEEEEeCCCCHHHHHHHHHH-HhcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH--H-HHHHHhCC
Confidence 577888888654332 22222 2235689999999988542 333467899999999984321 1 11111 24
Q ss_pred CCcEEEEeCCccCCCHH
Q psy10683 330 TTNRLLLTGTPLQNNLH 346 (429)
Q Consensus 330 ~~~r~~lTgTP~~n~~~ 346 (429)
..+.++|||||+.+.+.
T Consensus 516 ~~~vL~mSATp~p~tl~ 532 (780)
T 1gm5_A 516 MVDTLVMSATPIPRSMA 532 (780)
T ss_dssp CCCEEEEESSCCCHHHH
T ss_pred CCCEEEEeCCCCHHHHH
Confidence 57789999999876554
No 44
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.50 E-value=2.2e-13 Score=135.17 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=104.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc---CC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC---PT 255 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~---~~ 255 (429)
.++|+|.+++..++.. .+.+.++..++|+|||++++..+............+|||+|. .+..||.+.+.++. ++
T Consensus 47 ~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 124 (412)
T 3fht_A 47 RPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 124 (412)
T ss_dssp SCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 6899999999877641 246789999999999998755444333323445578999999 57788877777665 56
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh---hhccCceEEEecCcccccC--chh-HHHHHHHhc-
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV---FKKFNWRYLVIDEAHRIKN--EKS-KLSEIVREF- 328 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~---l~~~~~~~vIiDEaH~~kn--~~s-~~~~~~~~l- 328 (429)
..+....+...... ......+|+|+|++.+...... +.-..+++||+||||++.. ... ........+
T Consensus 125 ~~~~~~~~~~~~~~------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~ 198 (412)
T 3fht_A 125 LKLAYAVRGNKLER------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 198 (412)
T ss_dssp CCEEEECTTCCCCT------TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC
T ss_pred ceEEEeecCcchhh------hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC
Confidence 67766666543221 1124568999999999765432 3234688999999999743 222 223333333
Q ss_pred cCCcEEEEeCCcc
Q psy10683 329 KTTNRLLLTGTPL 341 (429)
Q Consensus 329 ~~~~r~~lTgTP~ 341 (429)
.....+++||||-
T Consensus 199 ~~~~~i~~SAT~~ 211 (412)
T 3fht_A 199 RNCQMLLFSATFE 211 (412)
T ss_dssp TTCEEEEEESCCC
T ss_pred CCceEEEEEeecC
Confidence 3456799999984
No 45
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.49 E-value=4.5e-13 Score=134.57 Aligned_cols=155 Identities=16% Similarity=0.152 Sum_probs=108.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHH-HHHHhhhc----ccCCCeEEEecc-chHHHHHHHHHhhc
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISL-LGYMKHYR----NIAGPHIVIVPK-STLLNWMNEFKKWC 253 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~-~~~l~~~~----~~~~~~LIV~P~-~ll~qW~~e~~~~~ 253 (429)
.++|+|.+++..++ .+.+.++..++|+|||+..+.. +..+.... .....+|||+|. .|..||.+++.++.
T Consensus 78 ~pt~iQ~~ai~~i~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVIS----SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 68899999998765 4778999999999999976543 33443321 124578999999 78899999999987
Q ss_pred C--CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccCch--hHHHHHHHh
Q psy10683 254 P--TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKNEK--SKLSEIVRE 327 (429)
Q Consensus 254 ~--~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~ 327 (429)
. .+++...+|......... .. ....+|+|+|++.+..... .+.-..+++||+||||++.+.. ....+.+..
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~-~l--~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~ 230 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNE-CI--TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTH 230 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHH-HH--TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHC
T ss_pred ccCCcEEEEEECCCCHHHHHH-Hh--hcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHh
Confidence 4 456677777654432211 11 2457899999999976543 2223467899999999986543 333444444
Q ss_pred c---cCCcEEEEeCCcc
Q psy10683 328 F---KTTNRLLLTGTPL 341 (429)
Q Consensus 328 l---~~~~r~~lTgTP~ 341 (429)
+ .....+++|||+-
T Consensus 231 ~~~~~~~q~l~~SAT~~ 247 (434)
T 2db3_A 231 VTMRPEHQTLMFSATFP 247 (434)
T ss_dssp TTSCSSCEEEEEESCCC
T ss_pred cCCCCCceEEEEeccCC
Confidence 3 3456899999983
No 46
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.48 E-value=7.3e-14 Score=143.16 Aligned_cols=162 Identities=14% Similarity=0.059 Sum_probs=105.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCce
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRA 258 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~ 258 (429)
.++++|.+++..+... .+.+.++..+||+|||++++..+............+|||||. .+..||.+++.+++....+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 5889999999866531 247889999999999998765554443333445689999999 5889999999999865444
Q ss_pred EEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhh--hhhccCceEEEecCcccccC---chhHHHHHHHhcc-CCc
Q psy10683 259 ICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERG--VFKKFNWRYLVIDEAHRIKN---EKSKLSEIVREFK-TTN 332 (429)
Q Consensus 259 ~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~--~l~~~~~~~vIiDEaH~~kn---~~s~~~~~~~~l~-~~~ 332 (429)
....+....... ......+|+|+|++.+..... .+....+++||+||||++.. ...........+. ...
T Consensus 219 ~~~~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~ 293 (508)
T 3fho_A 219 KTAFGIKDSVPK-----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQ 293 (508)
T ss_dssp CEEC---------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCE
T ss_pred eEEEEeCCcccc-----cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCe
Confidence 333332221111 112367899999999876432 22334689999999999854 2223333444444 445
Q ss_pred EEEEeCCccCCCHHHHH
Q psy10683 333 RLLLTGTPLQNNLHELW 349 (429)
Q Consensus 333 r~~lTgTP~~n~~~dl~ 349 (429)
.+++||||- +...++.
T Consensus 294 ~i~lSAT~~-~~~~~~~ 309 (508)
T 3fho_A 294 IVLFSATFS-ERVEKYA 309 (508)
T ss_dssp EEEEESCCS-THHHHHH
T ss_pred EEEEeCCCC-HHHHHHH
Confidence 699999984 3344433
No 47
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.47 E-value=8.7e-13 Score=131.20 Aligned_cols=155 Identities=16% Similarity=0.212 Sum_probs=105.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHH-HHHHHhhhc-----------------ccCCCeEEEecc-c
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS-LLGYMKHYR-----------------NIAGPHIVIVPK-S 240 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~-~~~~l~~~~-----------------~~~~~~LIV~P~-~ 240 (429)
.++|+|.+++..+. .+.+.++..++|+|||+.++. ++..+.... .....+|||+|. .
T Consensus 37 ~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 37 RPTPVQKHAIPIIK----EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCHHHHHHHHHHc----cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 78899999998654 477899999999999987654 333333211 112468999999 8
Q ss_pred hHHHHHHHHHhhcC--CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccC
Q psy10683 241 TLLNWMNEFKKWCP--TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKN 316 (429)
Q Consensus 241 ll~qW~~e~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn 316 (429)
+..||.+++.++.. ++++..++|........ ... ....+|+|+|++.+...... +.-..+++||+||||++..
T Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~--~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~ 189 (417)
T 2i4i_A 113 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI-RDL--ERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 189 (417)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHH-HHH--TTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCceEEEEECCCCHHHHH-HHh--hCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhc
Confidence 88999999998874 46777777765443321 111 23578999999999765432 3334678999999999854
Q ss_pred ch--hHHHHHHHh--cc---CCcEEEEeCCcc
Q psy10683 317 EK--SKLSEIVRE--FK---TTNRLLLTGTPL 341 (429)
Q Consensus 317 ~~--s~~~~~~~~--l~---~~~r~~lTgTP~ 341 (429)
.. ......+.. +. ....+++||||-
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 190 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP 221 (417)
T ss_dssp TTCHHHHHHHHTSSSCCCBTTBEEEEEESCCC
T ss_pred cCcHHHHHHHHHhccCCCcCCcEEEEEEEeCC
Confidence 32 222333332 11 345799999983
No 48
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.46 E-value=1.9e-13 Score=140.38 Aligned_cols=166 Identities=20% Similarity=0.229 Sum_probs=116.0
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~ 257 (429)
..++|+|.+++..++. +.++++.+++|+|||+..+..+ +.. .+.+|||+|. +++.||.+.+.++ +..
T Consensus 24 ~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~--l~~----~g~~lvi~P~~aL~~q~~~~l~~~--gi~ 91 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPA--LLL----NGLTVVVSPLISLMKDQVDQLQAN--GVA 91 (523)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHH--HHS----SSEEEEECSCHHHHHHHHHHHHHT--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHH--HHh----CCCEEEECChHHHHHHHHHHHHHc--CCc
Confidence 3789999999987763 6789999999999998654322 222 3678999999 8888899999886 455
Q ss_pred eEEEeCChhhH--HHHHHhhcCCCCccEEEcchHHHHHH--hhhhhccCceEEEecCcccccCch-------hHHHHHHH
Q psy10683 258 AICLIGDQDAR--NAMIRDVMMPGEWDVCITSYEMCIRE--RGVFKKFNWRYLVIDEAHRIKNEK-------SKLSEIVR 326 (429)
Q Consensus 258 ~~~~~g~~~~~--~~~~~~~~~~~~~dvvitty~~l~~~--~~~l~~~~~~~vIiDEaH~~kn~~-------s~~~~~~~ 326 (429)
+..+.+..... ..... ....+..+|+++|++.+... ...+....+.+|||||||.+.... ..+.....
T Consensus 92 ~~~l~~~~~~~~~~~~~~-~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~ 170 (523)
T 1oyw_A 92 AACLNSTQTREQQLEVMT-GCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQ 170 (523)
T ss_dssp EEEECTTSCHHHHHHHHH-HHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHH
T ss_pred EEEEeCCCCHHHHHHHHH-HHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHH
Confidence 66666654322 11111 11225688999999998533 233455689999999999985432 11223344
Q ss_pred hccCCcEEEEeCCccCCCHHHHHHHHhhhCC
Q psy10683 327 EFKTTNRLLLTGTPLQNNLHELWALLNFLLP 357 (429)
Q Consensus 327 ~l~~~~r~~lTgTP~~n~~~dl~~ll~fl~p 357 (429)
.+....++++||||......++...+.+-.|
T Consensus 171 ~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~ 201 (523)
T 1oyw_A 171 RFPTLPFMALTATADDTTRQDIVRLLGLNDP 201 (523)
T ss_dssp HCTTSCEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred hCCCCCEEEEeCCCCHHHHHHHHHHhCCCCC
Confidence 5567889999999988777888877765433
No 49
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2.3e-12 Score=141.39 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=110.6
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTL 256 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~ 256 (429)
+..|+|||.+++..+.. +.+.+++.++|+|||+++...+..... ...++||++|. .|..||.++|.++++
T Consensus 84 ~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 45799999999987654 678999999999999987544433322 24689999998 888999999999887
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCch--hHHHHHHHhc-cCC
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNEK--SKLSEIVREF-KTT 331 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~l-~~~ 331 (429)
.+.++.|..... ...+|+|+|++.+...... ..-..+++|||||+|++.+.. ......+..+ ...
T Consensus 155 ~vglltGd~~~~----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 DVGLMTGDITIN----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp CEEEECSSCEEC----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred CEEEEeCCCccC----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 566677754321 3568999999998754321 222368899999999997652 3334445555 346
Q ss_pred cEEEEeCCccCCCHHHHHHHHh
Q psy10683 332 NRLLLTGTPLQNNLHELWALLN 353 (429)
Q Consensus 332 ~r~~lTgTP~~n~~~dl~~ll~ 353 (429)
..++||||+ . +..++...+.
T Consensus 225 ~il~LSATi-~-n~~e~a~~l~ 244 (1010)
T 2xgj_A 225 RYVFLSATI-P-NAMEFAEWIC 244 (1010)
T ss_dssp EEEEEECCC-T-THHHHHHHHH
T ss_pred eEEEEcCCC-C-CHHHHHHHHH
Confidence 789999995 2 3455555443
No 50
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.42 E-value=7.9e-13 Score=137.48 Aligned_cols=164 Identities=18% Similarity=0.207 Sum_probs=112.7
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~ 257 (429)
..++|+|.+++..++. +.++++..++|+|||+..+..+ +. ..+.+|||+|. +|+.||.+.+.++ ++.
T Consensus 43 ~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpa--l~----~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPA--LC----SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHH--HT----SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHH--HH----cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 3789999999987764 6789999999999998654333 22 24679999998 8889999999987 566
Q ss_pred eEEEeCChhhH--HHHHHhhc-CCCCccEEEcchHHHHHH---hhh----hhccCceEEEecCcccccCch-------hH
Q psy10683 258 AICLIGDQDAR--NAMIRDVM-MPGEWDVCITSYEMCIRE---RGV----FKKFNWRYLVIDEAHRIKNEK-------SK 320 (429)
Q Consensus 258 ~~~~~g~~~~~--~~~~~~~~-~~~~~dvvitty~~l~~~---~~~----l~~~~~~~vIiDEaH~~kn~~-------s~ 320 (429)
+..+.|..... ........ ..+..+|+++|++.+... ... +....+.+|||||||.+.... ..
T Consensus 111 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~ 190 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKA 190 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGG
T ss_pred EEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHH
Confidence 66666654322 22222221 346789999999987531 222 223478999999999975422 12
Q ss_pred HHHHHHhccCCcEEEEeCCccCCCHHHHHHHHhh
Q psy10683 321 LSEIVREFKTTNRLLLTGTPLQNNLHELWALLNF 354 (429)
Q Consensus 321 ~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll~f 354 (429)
+......+....+++|||||-.....++...+..
T Consensus 191 l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~ 224 (591)
T 2v1x_A 191 LGILKRQFPNASLIGLTATATNHVLTDAQKILCI 224 (591)
T ss_dssp GGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCC
Confidence 2233344567789999999976666666665543
No 51
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=2.9e-12 Score=133.36 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=104.2
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHH-HHhhhc---ccCCCeEEEecc-chHHHHHHHHHhhc-
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG-YMKHYR---NIAGPHIVIVPK-STLLNWMNEFKKWC- 253 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~-~l~~~~---~~~~~~LIV~P~-~ll~qW~~e~~~~~- 253 (429)
.++|+|.+++..++. ..+.+.++..+||+|||+.++..+. .+.... .....+|||+|. .|..||.+++.+++
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 689999999987652 1355678899999999997654443 333221 123468999998 78899999998864
Q ss_pred -----CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh---hhccCceEEEecCcccccCch--hHHHH
Q psy10683 254 -----PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV---FKKFNWRYLVIDEAHRIKNEK--SKLSE 323 (429)
Q Consensus 254 -----~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~~--s~~~~ 323 (429)
+...+....|.......... . .....+|+|+|++.+...... ..--.+++|||||||++.... .....
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~~~~-l-~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~ 198 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAAMNK-M-NKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 198 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHH-H-HHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hcccccceEEEEEECCccHHHHHHH-H-hcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHH
Confidence 44566677766543332111 1 113468999999998754332 122357899999999986543 22222
Q ss_pred HHHhc---c-----CCcEEEEeCCccC
Q psy10683 324 IVREF---K-----TTNRLLLTGTPLQ 342 (429)
Q Consensus 324 ~~~~l---~-----~~~r~~lTgTP~~ 342 (429)
.+..+ . ....+++|||+-.
T Consensus 199 i~~~l~~~~~~~~~~~~~l~~SAT~~~ 225 (579)
T 3sqw_A 199 ISGILNEKNSKSADNIKTLLFSATLDD 225 (579)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred HHHHhhhhhcccccCceEEEEeccCCh
Confidence 22222 1 4468999999853
No 52
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.37 E-value=4.1e-12 Score=131.67 Aligned_cols=158 Identities=20% Similarity=0.197 Sum_probs=102.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHH-HHhhhc---ccCCCeEEEecc-chHHHHHHHHHhhc-
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG-YMKHYR---NIAGPHIVIVPK-STLLNWMNEFKKWC- 253 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~-~l~~~~---~~~~~~LIV~P~-~ll~qW~~e~~~~~- 253 (429)
.++|+|.+++..++. ..+.+.++..++|+|||+.++..+. .+.... .....+|||+|. .|..||.+++.+++
T Consensus 94 ~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 699999999987652 1355788899999999998655443 333211 112468999998 78889999998853
Q ss_pred -----CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhh---hccCceEEEecCcccccCch--hHHHH
Q psy10683 254 -----PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF---KKFNWRYLVIDEAHRIKNEK--SKLSE 323 (429)
Q Consensus 254 -----~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l---~~~~~~~vIiDEaH~~kn~~--s~~~~ 323 (429)
+...+....|.......... . .....+|+|+|++.+....... .--.+++|||||||++.... .....
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~-~-~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~ 249 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFRAAMNK-M-NKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 249 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHH-H-HHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hccccCceeEEEEECCcCHHHHHHH-H-hcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHH
Confidence 34556666666543332111 1 1135689999999986543321 22357899999999986542 22222
Q ss_pred HHHhc---c-----CCcEEEEeCCcc
Q psy10683 324 IVREF---K-----TTNRLLLTGTPL 341 (429)
Q Consensus 324 ~~~~l---~-----~~~r~~lTgTP~ 341 (429)
.+..+ . ....+++|||+-
T Consensus 250 i~~~l~~~~~~~~~~~~~l~~SAT~~ 275 (563)
T 3i5x_A 250 ISGILNEKNSKSADNIKTLLFSATLD 275 (563)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCC
T ss_pred HHHhhhhccccCccCceEEEEEccCC
Confidence 22222 1 346899999985
No 53
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.37 E-value=2.8e-12 Score=130.34 Aligned_cols=155 Identities=16% Similarity=0.112 Sum_probs=101.4
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhh---cC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKW---CP 254 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~---~~ 254 (429)
..++|+|..++..++. ..+.+.++..++|+|||++++..+............+|||+|. .|..||.+.+.++ .+
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 3688999999987754 1246789999999999998654443322222333478999999 6677886666554 45
Q ss_pred CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh---hhccCceEEEecCcccccCc--hh-HHHHHHHhc
Q psy10683 255 TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV---FKKFNWRYLVIDEAHRIKNE--KS-KLSEIVREF 328 (429)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~--~s-~~~~~~~~l 328 (429)
...+....+...... ......+|+|+|++.+...... +.-..+++|||||||++... .. .....+..+
T Consensus 191 ~~~~~~~~~~~~~~~------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~ 264 (479)
T 3fmp_B 191 ELKLAYAVRGNKLER------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (479)
T ss_dssp TCCEEEESTTCCCCT------TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS
T ss_pred CceEEEEeCCccccc------cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC
Confidence 677776666543211 1123468999999999765432 22346889999999998542 12 222233333
Q ss_pred -cCCcEEEEeCCcc
Q psy10683 329 -KTTNRLLLTGTPL 341 (429)
Q Consensus 329 -~~~~r~~lTgTP~ 341 (429)
.....+++||||-
T Consensus 265 ~~~~~~i~~SAT~~ 278 (479)
T 3fmp_B 265 PRNCQMLLFSATFE 278 (479)
T ss_dssp CTTSEEEEEESCCC
T ss_pred CccceEEEEeCCCC
Confidence 3456799999984
No 54
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.35 E-value=6.9e-12 Score=137.55 Aligned_cols=157 Identities=15% Similarity=0.131 Sum_probs=112.3
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTL 256 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~ 256 (429)
+..|+|+|.+++..+. .+.+.++..++|+|||+++...+..+.. ..+.+||++|. .+..||.+++.+.+++.
T Consensus 37 ~f~l~~~Q~~aI~~il----~g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLE----QGDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp SSCCCHHHHHHHHHHH----TTCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 4579999999997654 4678999999999999876554443322 24568999998 78899999999998888
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCc--hhHHHHHHHhcc-CC
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNE--KSKLSEIVREFK-TT 331 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~--~s~~~~~~~~l~-~~ 331 (429)
++..++|.... ....+|+|+|.+.+.+.... ..-..+.+|||||||++.+. .......+..+. ..
T Consensus 110 ~v~~l~G~~~~----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 110 NIGLITGDVQI----------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp CEEEECSSCEE----------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred eEEEEeCCCcc----------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 88888886532 24578999999998665322 12236789999999998653 333455556664 45
Q ss_pred cEEEEeCCccCCCHHHHHHHHh
Q psy10683 332 NRLLLTGTPLQNNLHELWALLN 353 (429)
Q Consensus 332 ~r~~lTgTP~~n~~~dl~~ll~ 353 (429)
..++|||||- +..++...+.
T Consensus 180 ~iIlLSAT~~--n~~ef~~~l~ 199 (997)
T 4a4z_A 180 KFILLSATVP--NTYEFANWIG 199 (997)
T ss_dssp EEEEEECCCT--THHHHHHHHH
T ss_pred CEEEEcCCCC--ChHHHHHHHh
Confidence 6799999973 3445555554
No 55
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.34 E-value=5.6e-12 Score=120.24 Aligned_cols=154 Identities=17% Similarity=0.149 Sum_probs=101.3
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHH-HHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc---
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI-SLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC--- 253 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i-~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~--- 253 (429)
..+.++|..++..++. ..+.+.++..++|+|||+..+ .++..+.. ......+|||+|. .+..|+.+.+.++.
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~-~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~ 189 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEP-ANKYPQCLCLSPTYELALQTGKVIEQMGKFY 189 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCT-TSCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhc-cCCCceEEEEcCcHHHHHHHHHHHHHHHhhC
Confidence 3688999999976542 113678999999999998764 33433322 2333468999999 67788877777664
Q ss_pred CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh---hhccCceEEEecCcccccCc---hhHHHHHHHh
Q psy10683 254 PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV---FKKFNWRYLVIDEAHRIKNE---KSKLSEIVRE 327 (429)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~---l~~~~~~~vIiDEaH~~kn~---~s~~~~~~~~ 327 (429)
+...+....|...... ......+|+|+|.+.+...... +.-....+|||||||++... .......+..
T Consensus 190 ~~~~~~~~~~~~~~~~------~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~ 263 (300)
T 3fmo_B 190 PELKLAYAVRGNKLER------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 263 (300)
T ss_dssp TTCCEEEESTTCCCCT------TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTT
T ss_pred CCcEEEEEeCCccHhh------hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHh
Confidence 5677777776554211 1134568999999998665432 22235679999999997531 1222233333
Q ss_pred cc-CCcEEEEeCCcc
Q psy10683 328 FK-TTNRLLLTGTPL 341 (429)
Q Consensus 328 l~-~~~r~~lTgTP~ 341 (429)
+. ....+++|||+-
T Consensus 264 ~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 264 LPRNCQMLLFSATFE 278 (300)
T ss_dssp SCTTCEEEEEESCCC
T ss_pred CCCCCEEEEEeccCC
Confidence 43 356789999984
No 56
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.4e-11 Score=136.29 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=108.5
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~ 257 (429)
..|+|+|.+++..+ ..+.+.+++.++|+|||+++...+..... ..+.+||++|. .|..||.++|.+++. .
T Consensus 183 f~ltp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~~--~ 253 (1108)
T 3l9o_A 183 FTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG--D 253 (1108)
T ss_dssp SCCCHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHTS--S
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEcCcHHHHHHHHHHHHHHhC--C
Confidence 47899999999865 45778999999999999987655543322 25678999999 788899999999887 5
Q ss_pred eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh--hhccCceEEEecCcccccCch--hHHHHHHHhcc-CCc
Q psy10683 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV--FKKFNWRYLVIDEAHRIKNEK--SKLSEIVREFK-TTN 332 (429)
Q Consensus 258 ~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~--l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~l~-~~~ 332 (429)
+.++.|... .....+|+|+|.+.+.+.... ..-..+.+|||||||++.... ..+...+..+. ...
T Consensus 254 VglltGd~~----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~q 323 (1108)
T 3l9o_A 254 VGLMTGDIT----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR 323 (1108)
T ss_dssp EEEECSSCB----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSE
T ss_pred ccEEeCccc----------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCce
Confidence 556666543 224678999999988764322 111257899999999996532 22334444553 456
Q ss_pred EEEEeCCccCCCHHHHHHHHh
Q psy10683 333 RLLLTGTPLQNNLHELWALLN 353 (429)
Q Consensus 333 r~~lTgTP~~n~~~dl~~ll~ 353 (429)
.++|||| +.|. .++...+.
T Consensus 324 vl~lSAT-ipn~-~e~a~~l~ 342 (1108)
T 3l9o_A 324 YVFLSAT-IPNA-MEFAEWIC 342 (1108)
T ss_dssp EEEEECS-CSSC-HHHHHHHH
T ss_pred EEEEcCC-CCCH-HHHHHHHH
Confidence 7999999 4444 34444443
No 57
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.29 E-value=1.9e-11 Score=130.30 Aligned_cols=160 Identities=22% Similarity=0.248 Sum_probs=110.5
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHH-HHHhhhcccCCCeEEEeccc-hHHHHHHHHHhhcC-CC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL-GYMKHYRNIAGPHIVIVPKS-TLLNWMNEFKKWCP-TL 256 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~-~~l~~~~~~~~~~LIV~P~~-ll~qW~~e~~~~~~-~~ 256 (429)
.|+|+|.+++..+ +..+.+.+++.++|+|||+++...+ ..+.. ..+.+++++|.. +..||.++++++.+ +.
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~il~i~P~r~La~q~~~~~~~~~~~g~ 103 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLK---NGGKAIYVTPLRALTNEKYLTFKDWELIGF 103 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHHHHHGGGGGGTC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH---CCCeEEEEeCcHHHHHHHHHHHHHhhcCCC
Confidence 7899999999752 3457889999999999999985444 33332 246889999995 88889999966543 56
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhh--ccCceEEEecCcccccCc--hhHHHHHHHhccCCc
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFK--KFNWRYLVIDEAHRIKNE--KSKLSEIVREFKTTN 332 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~--~~~~~~vIiDEaH~~kn~--~s~~~~~~~~l~~~~ 332 (429)
++....|....... .....+|+|+|++.+......-. -..+++||+||+|.+.+. ...+...+..+...+
T Consensus 104 ~v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ 177 (715)
T 2va8_A 104 KVAMTSGDYDTDDA------WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRN 177 (715)
T ss_dssp CEEECCSCSSSCCG------GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSE
T ss_pred EEEEEeCCCCCchh------hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCc
Confidence 77777775432211 11367899999998865432211 125789999999998642 223334455666788
Q ss_pred EEEEeCCccCCCHHHHHHHHh
Q psy10683 333 RLLLTGTPLQNNLHELWALLN 353 (429)
Q Consensus 333 r~~lTgTP~~n~~~dl~~ll~ 353 (429)
.++||||+- +..++...+.
T Consensus 178 ii~lSATl~--n~~~~~~~l~ 196 (715)
T 2va8_A 178 LLALSATIS--NYKQIAKWLG 196 (715)
T ss_dssp EEEEESCCT--THHHHHHHHT
T ss_pred EEEEcCCCC--CHHHHHHHhC
Confidence 999999984 3566655443
No 58
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.28 E-value=1.1e-11 Score=132.22 Aligned_cols=159 Identities=25% Similarity=0.265 Sum_probs=110.1
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC-CC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP-TL 256 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~-~~ 256 (429)
.|+|+|.+++..+ +..+.+.+++.++|+|||+++ +.++..+... .+.+++|+|. .+..||.+++.++.+ +.
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa~q~~~~~~~l~~~g~ 96 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALAEEKFQEFQDWEKIGL 96 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGHHHHHHHTGGGGGGTC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHHHHHHHHHHHHHhcCC
Confidence 7899999999742 334788999999999999988 4444444321 4688999998 888899999976654 57
Q ss_pred ceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhh--ccCceEEEecCcccccCc--hhHHHHHHHhcc-CC
Q psy10683 257 RAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFK--KFNWRYLVIDEAHRIKNE--KSKLSEIVREFK-TT 331 (429)
Q Consensus 257 ~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~--~~~~~~vIiDEaH~~kn~--~s~~~~~~~~l~-~~ 331 (429)
++..+.|....... ..+..+|+|+|++.+......-. -..+++||+||+|.+... ...+...+..+. ..
T Consensus 97 ~v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~ 170 (720)
T 2zj8_A 97 RVAMATGDYDSKDE------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKA 170 (720)
T ss_dssp CEEEECSCSSCCCG------GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTB
T ss_pred EEEEecCCCCcccc------ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCC
Confidence 78888885432211 12367899999998865433211 125789999999998652 223333444454 56
Q ss_pred cEEEEeCCccCCCHHHHHHHH
Q psy10683 332 NRLLLTGTPLQNNLHELWALL 352 (429)
Q Consensus 332 ~r~~lTgTP~~n~~~dl~~ll 352 (429)
+.++||||+- +..++...+
T Consensus 171 ~ii~lSATl~--n~~~~~~~l 189 (720)
T 2zj8_A 171 QIIGLSATIG--NPEELAEWL 189 (720)
T ss_dssp EEEEEECCCS--CHHHHHHHT
T ss_pred eEEEEcCCcC--CHHHHHHHh
Confidence 7899999974 356665544
No 59
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.28 E-value=1.2e-11 Score=131.71 Aligned_cols=158 Identities=25% Similarity=0.254 Sum_probs=108.6
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC-CCc
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP-TLR 257 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~-~~~ 257 (429)
.|+|+|.+++..+. .+.+.++..++|+|||+++...+..... ..+++++|+|. .+..||.++++++.+ +.+
T Consensus 25 ~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~---~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAI---KGGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHH---hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 78999999998743 4788999999999999988544432222 25689999999 488899999976654 567
Q ss_pred eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhh--ccCceEEEecCcccccCc--hhHHHHHHHhc----c
Q psy10683 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFK--KFNWRYLVIDEAHRIKNE--KSKLSEIVREF----K 329 (429)
Q Consensus 258 ~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~--~~~~~~vIiDEaH~~kn~--~s~~~~~~~~l----~ 329 (429)
+....|...... ...+..+|+|+|++.+......-. -..+++||+||+|.+... .......+..+ .
T Consensus 98 v~~~~G~~~~~~------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (702)
T 2p6r_A 98 IGISTGDYESRD------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (702)
T ss_dssp EEEECSSCBCCS------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred EEEEeCCCCcch------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc
Confidence 777777543221 122468899999998865433211 125679999999998652 22222333333 4
Q ss_pred CCcEEEEeCCccCCCHHHHHHHH
Q psy10683 330 TTNRLLLTGTPLQNNLHELWALL 352 (429)
Q Consensus 330 ~~~r~~lTgTP~~n~~~dl~~ll 352 (429)
..+.++||||+- +..++...+
T Consensus 172 ~~~ii~lSATl~--n~~~~~~~l 192 (702)
T 2p6r_A 172 ALRVIGLSATAP--NVTEIAEWL 192 (702)
T ss_dssp TCEEEEEECCCT--THHHHHHHT
T ss_pred CceEEEECCCcC--CHHHHHHHh
Confidence 567899999974 366665543
No 60
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.27 E-value=2.7e-11 Score=133.98 Aligned_cols=161 Identities=9% Similarity=0.230 Sum_probs=113.4
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc-CC
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC-PT 255 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~-~~ 255 (429)
+..+.|+|..++..++. +.+.++..++|+|||+.++..+.... .....+|||+|. .|..|+.+.+.++. .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 34688999999986653 67899999999999996655544333 335678999999 77889999999966 35
Q ss_pred CceEEEeCChhh--HHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCch-------------hH
Q psy10683 256 LRAICLIGDQDA--RNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEK-------------SK 320 (429)
Q Consensus 256 ~~~~~~~g~~~~--~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~-------------s~ 320 (429)
+++..++|.... +...... ...+..+|+|+|.+.+......+...++++|||||||++.... ..
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~-l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~ 227 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKS-FEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 227 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHH-HHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHH
T ss_pred CeEEEEeCCCCHHHHHHHHHH-HhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHH
Confidence 688888886543 2222222 2224589999999999766555556688999999999864321 11
Q ss_pred -HHHHHHhc------------cCCcEEEEeCCccCCCHH
Q psy10683 321 -LSEIVREF------------KTTNRLLLTGTPLQNNLH 346 (429)
Q Consensus 321 -~~~~~~~l------------~~~~r~~lTgTP~~n~~~ 346 (429)
...++..+ .....+++||||....+.
T Consensus 228 ~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~ 266 (1104)
T 4ddu_A 228 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR 266 (1104)
T ss_dssp HHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSST
T ss_pred HHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHH
Confidence 23333333 345679999998777655
No 61
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.09 E-value=5.1e-10 Score=123.73 Aligned_cols=152 Identities=11% Similarity=0.191 Sum_probs=107.3
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCC--
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPT-- 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~-- 255 (429)
..+ |+|.+++..++ .+.+.++..++|+|||+.++.++..+.. ....+|||+|. .|..|+.+.+.++++.
T Consensus 56 ~~p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 56 EPR-AIQKMWAKRIL----RKESFAATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp SCC-HHHHHHHHHHH----TTCCEECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCH-HHHHHHHHHHH----hCCCEEEEcCCCCCHHHHHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 347 99999998765 4678999999999999855555544432 34678999999 7778899999988754
Q ss_pred C----ceEEEeCChhhHHH--HHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-
Q psy10683 256 L----RAICLIGDQDARNA--MIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF- 328 (429)
Q Consensus 256 ~----~~~~~~g~~~~~~~--~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l- 328 (429)
+ ++..++|....... ...... ..+|+|+|.+.+......+. .+++||+||||++.+........+..+
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~l~---~~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~lg 202 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQNLR---NFKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLLG 202 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGG---GCSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHTT
T ss_pred CCccceEEEEeCCCChhhHHHHHhhcc---CCCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHHhC
Confidence 3 66777776543321 222222 27899999999987655544 678999999999877544444455444
Q ss_pred -----------cCCcEEEEeCCccCC
Q psy10683 329 -----------KTTNRLLLTGTPLQN 343 (429)
Q Consensus 329 -----------~~~~r~~lTgTP~~n 343 (429)
.....+++|+|+...
T Consensus 203 f~~~~~~~~~~~~~q~~l~SAT~t~~ 228 (1054)
T 1gku_B 203 FHYDLKTKSWVGEARGCLMVSTATAK 228 (1054)
T ss_dssp EEEETTTTEEEECCSSEEEECCCCSC
T ss_pred cchhhhhhhcccCCceEEEEecCCCc
Confidence 224468899887654
No 62
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.97 E-value=2.9e-09 Score=109.99 Aligned_cols=132 Identities=19% Similarity=0.223 Sum_probs=92.1
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcC--C
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCP--T 255 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~--~ 255 (429)
..+||+|.+.+..+...+..+..+++..++|+|||+..+..+.. ...+++|++|+ .+..|+.+++.+... +
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 47899999999988888888888999999999999977654432 24578999999 677889999987643 4
Q ss_pred CceEEEeCChhh--------------------------------HHHHHHh----------------hcCCCCccEEEcc
Q psy10683 256 LRAICLIGDQDA--------------------------------RNAMIRD----------------VMMPGEWDVCITS 287 (429)
Q Consensus 256 ~~~~~~~g~~~~--------------------------------~~~~~~~----------------~~~~~~~dvvitt 287 (429)
+++.++.|.... ....... .......||||++
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 566665553210 0000000 0011356899999
Q ss_pred hHHHHHHhhh--hh-ccCceEEEecCcccccC
Q psy10683 288 YEMCIRERGV--FK-KFNWRYLVIDEAHRIKN 316 (429)
Q Consensus 288 y~~l~~~~~~--l~-~~~~~~vIiDEaH~~kn 316 (429)
|..+...... +. .....+|||||||++-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9999776321 11 13567899999999966
No 63
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.95 E-value=5.1e-09 Score=95.92 Aligned_cols=153 Identities=13% Similarity=0.133 Sum_probs=88.9
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHH-Hhhh-cccCCCeEEEeccch-HHHHHHHHHhhcCC-
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGY-MKHY-RNIAGPHIVIVPKST-LLNWMNEFKKWCPT- 255 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~-l~~~-~~~~~~~LIV~P~~l-l~qW~~e~~~~~~~- 255 (429)
.+.++|.+++..+. .+...++..++|+|||......+.. .... .......++++|... ..|..+.+......
T Consensus 61 p~~~~q~~~i~~i~----~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAIS----QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHH----HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHh----cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 57899999997664 3677889999999999765444332 2221 112235677889844 45566666655432
Q ss_pred CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccc-cCchh---HHHHHHHhccCC
Q psy10683 256 LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRI-KNEKS---KLSEIVREFKTT 331 (429)
Q Consensus 256 ~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~-kn~~s---~~~~~~~~l~~~ 331 (429)
....+.++.. ..........+|+|+|.+.+.+.... .-.+.++||+||||+. -.... .....+......
T Consensus 137 ~~~~~g~~~~------~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~ 209 (235)
T 3llm_A 137 PGKSCGYSVR------FESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEV 209 (235)
T ss_dssp TTSSEEEEET------TEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTS
T ss_pred cCceEEEeec------hhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCC
Confidence 1111111110 01111124578999999888665432 1235789999999984 22111 112223333456
Q ss_pred cEEEEeCCccCC
Q psy10683 332 NRLLLTGTPLQN 343 (429)
Q Consensus 332 ~r~~lTgTP~~n 343 (429)
..+++|||+-..
T Consensus 210 ~~il~SAT~~~~ 221 (235)
T 3llm_A 210 RIVLMSATIDTS 221 (235)
T ss_dssp EEEEEECSSCCH
T ss_pred eEEEEecCCCHH
Confidence 689999997533
No 64
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.94 E-value=2.8e-09 Score=109.72 Aligned_cols=69 Identities=23% Similarity=0.227 Sum_probs=53.1
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhh
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKW 252 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~ 252 (429)
+..+||+|.+.+..+...+..+..+++..++|+|||+..+..+ +.. ..+++|++|+ .+..||.+++.+.
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~--~~~----~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLG--MQL----KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHH--HHH----TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHH--HhC----CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 4578999999998888888888899999999999998654443 221 4688999998 7788899999874
No 65
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.85 E-value=5.1e-08 Score=112.06 Aligned_cols=161 Identities=18% Similarity=0.238 Sum_probs=104.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHH-HHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc-C--
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS-LLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC-P-- 254 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~-~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~-~-- 254 (429)
.+.|.|.+++..+ +..+.+.+++.++|+|||+.+.- ++..+.. ...+.+|+|+|. ++..|=.+++.+.+ +
T Consensus 926 ~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~~--~~~~kavyi~P~raLa~q~~~~~~~~f~~~~ 1000 (1724)
T 4f92_B 926 FFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLLQ--SSEGRCVYITPMEALAEQVYMDWYEKFQDRL 1000 (1724)
T ss_dssp BCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHHh--CCCCEEEEEcChHHHHHHHHHHHHHHhchhc
Confidence 5779999998755 45677899999999999998744 4444433 335578999999 66666555554332 2
Q ss_pred CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhc----cCceEEEecCcccccCchhHHHHH-HHh--
Q psy10683 255 TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKK----FNWRYLVIDEAHRIKNEKSKLSEI-VRE-- 327 (429)
Q Consensus 255 ~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~----~~~~~vIiDEaH~~kn~~s~~~~~-~~~-- 327 (429)
+.++..+.|......... .+.+|+|+|++.+..-...... .+..+||+||+|.+.......... +..
T Consensus 1001 g~~V~~ltGd~~~~~~~~------~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~ 1074 (1724)
T 4f92_B 1001 NKKVVLLTGETSTDLKLL------GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMR 1074 (1724)
T ss_dssp CCCEEECCSCHHHHHHHH------HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCcchhhc------CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHH
Confidence 467777788765443322 2458999999987433221111 145799999999997644333322 222
Q ss_pred -----c-cCCcEEEEeCCccCCCHHHHHHHHh
Q psy10683 328 -----F-KTTNRLLLTGTPLQNNLHELWALLN 353 (429)
Q Consensus 328 -----l-~~~~r~~lTgTP~~n~~~dl~~ll~ 353 (429)
+ ...+.++||||- .|..|+...++
T Consensus 1075 ~i~~~~~~~~riI~lSATl--~N~~dla~WL~ 1104 (1724)
T 4f92_B 1075 YISSQIERPIRIVALSSSL--SNAKDVAHWLG 1104 (1724)
T ss_dssp HHHHTTSSCCEEEEEESCB--TTHHHHHHHHT
T ss_pred HHHhhcCCCceEEEEeCCC--CCHHHHHHHhC
Confidence 2 234668999994 35777766554
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.80 E-value=1.8e-08 Score=100.74 Aligned_cols=129 Identities=14% Similarity=0.096 Sum_probs=74.9
Q ss_pred CCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhc
Q psy10683 199 GINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVM 276 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 276 (429)
+.+.++..++|+|||+++ ++++..+.. ....+||++|. .|..|+.+.+. +..+....|.... ..
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~---~g~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~-------~~ 67 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK---KRLRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQS-------ER 67 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT----TSCEEEC---------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEECcHHHHHHHHHHHhC----CCeEEEEecCccc-------cC
Confidence 567899999999999987 444433332 23579999999 45566666554 4445433332111 11
Q ss_pred CCCCccEEEcchHHHHHHhh-hhhccCceEEEecCcccccCchh-HHHHHHHhc---cCCcEEEEeCCccCC
Q psy10683 277 MPGEWDVCITSYEMCIRERG-VFKKFNWRYLVIDEAHRIKNEKS-KLSEIVREF---KTTNRLLLTGTPLQN 343 (429)
Q Consensus 277 ~~~~~dvvitty~~l~~~~~-~l~~~~~~~vIiDEaH~~kn~~s-~~~~~~~~l---~~~~r~~lTgTP~~n 343 (429)
. ....+.+++...+....- ...-.++++|||||+|++ +... .....+..+ .....++|||||...
T Consensus 68 ~-~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 68 T-GNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGT 137 (431)
T ss_dssp --CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC
T ss_pred C-CCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Confidence 1 122345556666543221 111235789999999998 3222 222333333 357789999999753
No 67
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.70 E-value=1.5e-07 Score=108.31 Aligned_cols=162 Identities=18% Similarity=0.142 Sum_probs=104.1
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHH-HHHHHHhhhc-------ccCCCeEEEecc-chHHHHHHHHH
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI-SLLGYMKHYR-------NIAGPHIVIVPK-STLLNWMNEFK 250 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i-~~~~~l~~~~-------~~~~~~LIV~P~-~ll~qW~~e~~ 250 (429)
.|.+.|..++..+ +..+.+.+++.++|+|||+.+. +++..+.... ....++|+|+|. +|..|=.++|.
T Consensus 79 ~ln~iQs~~~~~a---l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 79 TLNRIQSKLYRAA---LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp BCCHHHHHTHHHH---HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH---HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 6889999988644 4677899999999999999874 4444444322 123467999998 66666667776
Q ss_pred hhcC--CCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhh----ccCceEEEecCcccccCchhHHHH-
Q psy10683 251 KWCP--TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFK----KFNWRYLVIDEAHRIKNEKSKLSE- 323 (429)
Q Consensus 251 ~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~----~~~~~~vIiDEaH~~kn~~s~~~~- 323 (429)
+.+. ++++..+.|...... ......+|+|||++.+..-..... --...+|||||+|.+.+.......
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~------~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~ 229 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCK------EEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEA 229 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCC------TTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCc------cccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHH
Confidence 6553 456777777543211 112457899999998743221110 124679999999999764322222
Q ss_pred ----HHH---hc-cCCcEEEEeCCccCCCHHHHHHHH
Q psy10683 324 ----IVR---EF-KTTNRLLLTGTPLQNNLHELWALL 352 (429)
Q Consensus 324 ----~~~---~l-~~~~r~~lTgTP~~n~~~dl~~ll 352 (429)
.+. .+ ...++++||||- .|+.|+...|
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~wL 264 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATL--PNYEDVATFL 264 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHHHh
Confidence 111 22 345689999994 3577765543
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.59 E-value=1.4e-07 Score=98.14 Aligned_cols=127 Identities=16% Similarity=0.160 Sum_probs=82.1
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhc
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVM 276 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 276 (429)
++...++..++|+|||.+....+. . ....+||++|. .+..|+.+.+.+.+. ..+....|...
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll---~---~g~~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~~---------- 293 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYA---A---QGYKVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVRT---------- 293 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH---H---TTCCEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSCE----------
T ss_pred cCCeEEEEeCCchhHHHHHHHHHH---H---CCCeEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcEe----------
Confidence 455678899999999977654432 2 13479999999 556678777766653 33444455432
Q ss_pred CCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhH-HHHHHHhccCC---cEEEEeCCccC
Q psy10683 277 MPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSK-LSEIVREFKTT---NRLLLTGTPLQ 342 (429)
Q Consensus 277 ~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~-~~~~~~~l~~~---~r~~lTgTP~~ 342 (429)
.....+|+++|.+.+..+ ..+...++++|||||||.+...... +...+..+... ..+++||||-.
T Consensus 294 ~~~~~~IlV~TPGrLl~~-~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 294 ITTGAPVTYSTYGKFLAD-GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp ECCCCSEEEEEHHHHHHT-TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred ccCCCCEEEECcHHHHhC-CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 135678999999998543 3344446889999999887432222 33344444332 25778999865
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.56 E-value=2.5e-08 Score=107.48 Aligned_cols=56 Identities=54% Similarity=0.991 Sum_probs=50.0
Q ss_pred cccccCCCCcccCCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccC
Q psy10683 21 IVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76 (429)
Q Consensus 21 ~~~~~~~p~~~~~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~ 76 (429)
...+..+|+++.+..|||||++|++||...+.++.||||||+||+|||+++++++.
T Consensus 222 ~~~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~ 277 (800)
T 3mwy_W 222 FEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFIS 277 (800)
T ss_dssp CCCCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHH
T ss_pred ccccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHH
Confidence 34456778888888999999999999999999999999999999999999998764
No 70
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.55 E-value=1.8e-07 Score=94.14 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=74.6
Q ss_pred CCeEeecCCCCCHHHH-HHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcC
Q psy10683 200 INGILADEMGLGKTLQ-TISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMM 277 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~-~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 277 (429)
...++..++|+|||++ .+.++..+.. ....+||++|. .+..|+.+++. +..+. +.. .... ...
T Consensus 20 ~~~lv~a~TGsGKT~~~~~~~l~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~----g~~v~-~~~-~~~~------~~~ 84 (451)
T 2jlq_A 20 RLTIMDLHPGAGKTKRILPSIVREALL---RRLRTLILAPTRVVAAEMEEALR----GLPIR-YQT-PAVK------SDH 84 (451)
T ss_dssp CEEEECCCTTSSCCTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT----TSCEE-ECC-TTCS------CCC
T ss_pred CeEEEECCCCCCHhhHHHHHHHHHHHh---cCCcEEEECCCHHHHHHHHHHhc----Cceee-eee-cccc------ccC
Confidence 3348888999999996 4444443332 24578999999 55667777664 22221 111 1110 011
Q ss_pred CCCccEEEcchHHHHHHhhhhh-ccCceEEEecCcccccCchhHHHH-HHH---hccCCcEEEEeCCccCC
Q psy10683 278 PGEWDVCITSYEMCIRERGVFK-KFNWRYLVIDEAHRIKNEKSKLSE-IVR---EFKTTNRLLLTGTPLQN 343 (429)
Q Consensus 278 ~~~~dvvitty~~l~~~~~~l~-~~~~~~vIiDEaH~~kn~~s~~~~-~~~---~l~~~~r~~lTgTP~~n 343 (429)
.....+.++|.+.+........ -.++++||+||||++ +....... .+. .......++|||||-..
T Consensus 85 ~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 154 (451)
T 2jlq_A 85 TGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGS 154 (451)
T ss_dssp CSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred CCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCcc
Confidence 2344577888887755433221 236789999999987 33222211 111 11356789999999553
No 71
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.54 E-value=2.3e-07 Score=93.54 Aligned_cols=133 Identities=15% Similarity=0.097 Sum_probs=75.5
Q ss_pred HhcCCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChhhHHHHHH
Q psy10683 196 YENGINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQDARNAMIR 273 (429)
Q Consensus 196 ~~~~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~ 273 (429)
+.++...++..++|+|||.+. +.++..+.. ....+||++|. .+..|+.+++. +..+....+ ....
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~----g~~v~~~~~--~~~~---- 84 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---QRLRTAVLAPTRVVAAEMAEALR----GLPVRYQTS--AVQR---- 84 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHH---TTCCEEEEECSHHHHHHHHHHTT----TSCEEECC-----------
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEECchHHHHHHHHHHhc----CceEeEEec--cccc----
Confidence 455777899999999999984 555544432 24578999999 56677877775 222221111 1100
Q ss_pred hhcCCCCccEEEcchHHHHHHhh-hhhccCceEEEecCcccccCchhHHHHH---HHhccCCcEEEEeCCccCC
Q psy10683 274 DVMMPGEWDVCITSYEMCIRERG-VFKKFNWRYLVIDEAHRIKNEKSKLSEI---VREFKTTNRLLLTGTPLQN 343 (429)
Q Consensus 274 ~~~~~~~~dvvitty~~l~~~~~-~l~~~~~~~vIiDEaH~~kn~~s~~~~~---~~~l~~~~r~~lTgTP~~n 343 (429)
.. ...-.+.+++...+..... ...-.++++|||||||+........... .........+++||||-..
T Consensus 85 -~~-t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~ 156 (459)
T 2z83_A 85 -EH-QGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGT 156 (459)
T ss_dssp -----CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred -CC-CCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcc
Confidence 00 1122355666666544322 1222367899999999852111111111 2222567889999999643
No 72
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.51 E-value=3.1e-07 Score=92.00 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=73.2
Q ss_pred hcCCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHh
Q psy10683 197 ENGINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRD 274 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~ 274 (429)
.++.+.++..++|+|||+++ +.++..+.. ....+||++|. .|..|+.+.+..+ .+....+... .
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~---~~~~~lil~Ptr~La~Q~~~~l~~~----~v~~~~~~~~-------~ 71 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECAR---RRLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAFS-------A 71 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCCC-------C
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHh---cCCeEEEEcchHHHHHHHHHHHhcC----CeEEecccce-------e
Confidence 35678899999999999986 444443433 23578999999 5667788777643 2221111100 0
Q ss_pred hcCCCCccEEEcchHHHHHHh-hhhhccCceEEEecCcccccCchhHH-HHHHHh---ccCCcEEEEeCCccCC
Q psy10683 275 VMMPGEWDVCITSYEMCIRER-GVFKKFNWRYLVIDEAHRIKNEKSKL-SEIVRE---FKTTNRLLLTGTPLQN 343 (429)
Q Consensus 275 ~~~~~~~dvvitty~~l~~~~-~~l~~~~~~~vIiDEaH~~kn~~s~~-~~~~~~---l~~~~r~~lTgTP~~n 343 (429)
...++.. +-+.+...+.... ....-.++++||+||+|++ +..... ...+.. ......++|||||..+
T Consensus 72 v~Tp~~l-~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~ 143 (440)
T 1yks_A 72 HGSGREV-IDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGT 143 (440)
T ss_dssp CCCSSCC-EEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred ccCCccc-eeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCch
Confidence 1111111 2223333332221 1111236789999999998 322211 112222 2456789999999765
No 73
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.44 E-value=6.3e-07 Score=93.54 Aligned_cols=82 Identities=22% Similarity=0.267 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhc--CCC
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWC--PTL 256 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~--~~~ 256 (429)
..||+|.+.+..+...+..+.++++..++|+|||+..+..+..... ....+++|++|+ ++..|+.+++.+.. ..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~--~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSS--ERKLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHH--HHTCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhh--hcCCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 5689999999988888888999999999999999987654332222 124578888998 77788999987654 245
Q ss_pred ceEEEeC
Q psy10683 257 RAICLIG 263 (429)
Q Consensus 257 ~~~~~~g 263 (429)
++..+.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 5555444
No 74
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.42 E-value=4.1e-07 Score=95.64 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=77.0
Q ss_pred HHHHHHH--HHHhcCCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEe
Q psy10683 187 RGLNWMI--SLYENGINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLI 262 (429)
Q Consensus 187 ~~v~~l~--~~~~~~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~ 262 (429)
.++..++ ..+..+.+.++..++|+|||+++ +.++..+.. ....+||++|. .|..|+.+.+..+. +. +.
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---~~~~~lilaPTr~La~Q~~~~l~~~~----i~-~~ 298 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---KRLRTAVLAPTRVVAAEMAEALRGLP----VR-YL 298 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTTSC----CE-EC
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEccHHHHHHHHHHHHhcCC----ee-ee
Confidence 5554332 23346778899999999999985 444444333 24578999999 56677887776542 11 11
Q ss_pred CChhhHHHHHHhhcCCCCccEEEcchHHHHHHh-hhhhccCceEEEecCcccccCchhHHHHHHHhc---cCCcEEEEeC
Q psy10683 263 GDQDARNAMIRDVMMPGEWDVCITSYEMCIRER-GVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF---KTTNRLLLTG 338 (429)
Q Consensus 263 g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~-~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l---~~~~r~~lTg 338 (429)
... ......++. -+-+.+...+.... ....-.++++|||||||++..........+..+ .....++|||
T Consensus 299 ~~~------l~~v~tp~~-ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~~SA 371 (673)
T 2wv9_A 299 TPA------VQREHSGNE-IVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTA 371 (673)
T ss_dssp CC---------CCCCSCC-CEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECS
T ss_pred ccc------ccccCCHHH-HHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccccCCcEEEEcC
Confidence 110 000111111 23344444443221 111223678999999999822111222222222 4567899999
Q ss_pred CccCC
Q psy10683 339 TPLQN 343 (429)
Q Consensus 339 TP~~n 343 (429)
||...
T Consensus 372 T~~~~ 376 (673)
T 2wv9_A 372 TPPGT 376 (673)
T ss_dssp SCTTC
T ss_pred CCChh
Confidence 99754
No 75
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.36 E-value=9.9e-07 Score=91.96 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=80.3
Q ss_pred HHHhcCCCeEeecCCCCCHHHHH-HHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChhhHHHH
Q psy10683 194 SLYENGINGILADEMGLGKTLQT-ISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQDARNAM 271 (429)
Q Consensus 194 ~~~~~~~~~ilad~~GlGKT~~~-i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~ 271 (429)
....++...++..++|+|||++. +.++..+.. ....+||++|. .|..|+.+++.. ..+. +.+..-
T Consensus 181 ~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl~PtreLa~Qi~~~l~~----~~v~-~~~~~l----- 247 (618)
T 2whx_A 181 DIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---RRLRTLILAPTRVVAAEMEEALRG----LPIR-YQTPAV----- 247 (618)
T ss_dssp GGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTT----SCEE-ECCTTS-----
T ss_pred HHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEcChHHHHHHHHHHhcC----Ccee-Eecccc-----
Confidence 34456788999999999999985 556655443 24578999999 556667766652 2222 322110
Q ss_pred HHhhcCCCCccEEEcchHHHHHHhhh-hhccCceEEEecCcccccCchh--HHHHHHHhc--cCCcEEEEeCCccCC
Q psy10683 272 IRDVMMPGEWDVCITSYEMCIRERGV-FKKFNWRYLVIDEAHRIKNEKS--KLSEIVREF--KTTNRLLLTGTPLQN 343 (429)
Q Consensus 272 ~~~~~~~~~~dvvitty~~l~~~~~~-l~~~~~~~vIiDEaH~~kn~~s--~~~~~~~~l--~~~~r~~lTgTP~~n 343 (429)
.........+.+++...+...... ..-.++++|||||||++ +... ........+ .....+++||||-..
T Consensus 248 --~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 248 --KSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGS 321 (618)
T ss_dssp --SCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTC
T ss_pred --eeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchh
Confidence 001112334666777766543221 11246789999999998 3222 122223333 456789999999544
No 76
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.24 E-value=4.2e-06 Score=89.49 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc-hHHHHHHHHHhhcCC-C-ceE
Q psy10683 183 DYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS-TLLNWMNEFKKWCPT-L-RAI 259 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~-ll~qW~~e~~~~~~~-~-~~~ 259 (429)
+.|..++..+ +..+...++..++|+|||.+.-.++.......+....++|++|.. +..|+.+.+...... . ..+
T Consensus 96 ~~q~~~i~~~---l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~v 172 (773)
T 2xau_A 96 HAQRDEFLKL---YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEV 172 (773)
T ss_dssp GGGHHHHHHH---HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTE
T ss_pred HHHHHHHHHH---HhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhhee
Confidence 3566666433 345667899999999999954333222111111133478889984 455666666655421 1 111
Q ss_pred EEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhh-hhccCceEEEecCccc-ccCchh--HHHHHHHh-ccCCcEE
Q psy10683 260 CLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGV-FKKFNWRYLVIDEAHR-IKNEKS--KLSEIVRE-FKTTNRL 334 (429)
Q Consensus 260 ~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~-l~~~~~~~vIiDEaH~-~kn~~s--~~~~~~~~-l~~~~r~ 334 (429)
-+..... .......+|+++|.+.+.+.... ..-.++++|||||+|. .-+... ...+.+.. ......+
T Consensus 173 G~~i~~~--------~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iI 244 (773)
T 2xau_A 173 GYSIRFE--------NKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKII 244 (773)
T ss_dssp EEEETTE--------EECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred cceeccc--------cccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEE
Confidence 1111100 11124567999999988765322 2234678999999995 322211 11222222 2455789
Q ss_pred EEeCCc
Q psy10683 335 LLTGTP 340 (429)
Q Consensus 335 ~lTgTP 340 (429)
++|||+
T Consensus 245 l~SAT~ 250 (773)
T 2xau_A 245 IMSATL 250 (773)
T ss_dssp EEESCS
T ss_pred EEeccc
Confidence 999999
No 77
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.17 E-value=2.2e-05 Score=83.08 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=91.2
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWC 253 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~ 253 (429)
|....|-|..++-.++. |. |....+|.|||+++...+ ++... ....++||+|+..|.. |...+-+++
T Consensus 77 G~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~-~L~aL--~G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAV-ALNAL--TGKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHH-HHHHT--TCSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHH-HHHHH--hCCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 34556789888865542 33 888999999999664333 22111 2346899999976643 777777766
Q ss_pred CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHH-----HHh----hhhhcc---CceEEEecCcccccCchhHH
Q psy10683 254 PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI-----RER----GVFKKF---NWRYLVIDEAHRIKNEKSKL 321 (429)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~-----~~~----~~l~~~---~~~~vIiDEaH~~kn~~s~~ 321 (429)
++++.++.|.......... ...||++.|...+. ... ..+... ...++||||+|.+-..
T Consensus 148 -GLsv~~i~Gg~~~~~r~~a-----y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD---- 217 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAERRKA-----YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID---- 217 (997)
T ss_dssp -TCCEEECCTTCCHHHHHHH-----HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS----
T ss_pred -CCeEEEEeCCCCHHHHHHH-----cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh----
Confidence 5777777775543221111 13689999988773 221 112222 5779999999975321
Q ss_pred HHHHHhccCCcEEEEeCCccCCCHHHHHHH
Q psy10683 322 SEIVREFKTTNRLLLTGTPLQNNLHELWAL 351 (429)
Q Consensus 322 ~~~~~~l~~~~r~~lTgTP~~n~~~dl~~l 351 (429)
.+..-+++|| |++.+. .+|..
T Consensus 218 -------eartPLIISg-p~~~~~-~lY~~ 238 (997)
T 2ipc_A 218 -------EARTPLIISG-PAEKAT-DLYYK 238 (997)
T ss_dssp -------STTSCEEEEE-SCSSCH-HHHHH
T ss_pred -------CCCCCeeeeC-CCccch-HHHHH
Confidence 2223389999 888773 44433
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.17 E-value=5.6e-07 Score=94.53 Aligned_cols=44 Identities=43% Similarity=0.600 Sum_probs=38.8
Q ss_pred CcccHHHHHHHHHHHHhH-----hcCcccchhhcccccchhhhhhccCC
Q psy10683 34 GEMRDYQVRGLNWMISLY-----ENGINGILADEMGLGKTLQTISLLGP 77 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~-----~~~~~~~l~~~~~~~k~~~~~~~~~~ 77 (429)
..|||||++|++||+.++ ..+.||||||+||+|||+++|+++..
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~ 102 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWT 102 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHH
Confidence 489999999999999876 35678999999999999999988754
No 79
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.04 E-value=6.3e-05 Score=79.73 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=79.8
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHH----HHHHHHHhhc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLL----NWMNEFKKWC 253 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~----qW~~e~~~~~ 253 (429)
|....|-|..|+-.+. .|.|..+.+|.|||+.+..-+. +... ....++||+|+--|. +|...+.+++
T Consensus 109 G~rP~~VQ~~~ip~Ll------~G~Iaem~TGeGKTLa~~LP~~-l~aL--~g~~v~VvTpTreLA~Qdae~m~~l~~~l 179 (922)
T 1nkt_A 109 DQRPFDVQVMGAAALH------LGNVAEMKTGEGKTLTCVLPAY-LNAL--AGNGVHIVTVNDYLAKRDSEWMGRVHRFL 179 (922)
T ss_dssp SCCCCHHHHHHHHHHH------TTEEEECCTTSCHHHHTHHHHH-HHHT--TTSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHhHh------cCCEEEecCCCccHHHHHHHHH-HHHH--hCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 3455577887776554 2348889999999987643331 1111 134689999996554 4888888887
Q ss_pred CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHH-----HHh----hhhhccCceEEEecCccccc
Q psy10683 254 PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI-----RER----GVFKKFNWRYLVIDEAHRIK 315 (429)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~-----~~~----~~l~~~~~~~vIiDEaH~~k 315 (429)
++++.+++|.......... ...||++.|...+. ... ..+......++|||||+++-
T Consensus 180 -GLsv~~i~gg~~~~~r~~~-----y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 180 -GLQVGVILATMTPDERRVA-----YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp -TCCEEECCTTCCHHHHHHH-----HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred -CCeEEEEeCCCCHHHHHHh-----cCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHH
Confidence 6788877776543221111 13589999987773 221 12333467899999999975
No 80
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.98 E-value=3.2e-06 Score=85.84 Aligned_cols=48 Identities=48% Similarity=0.884 Sum_probs=41.9
Q ss_pred CCcccCCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhccC
Q psy10683 28 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 76 (429)
Q Consensus 28 p~~~~~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~~ 76 (429)
|..+. ..|+|||.+|+.||...+..+.||||||+||+|||+++++++.
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~ 78 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS 78 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH
T ss_pred Chhhh-ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH
Confidence 44443 5899999999999999888899999999999999999988754
No 81
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=97.96 E-value=4.9e-05 Score=80.30 Aligned_cols=123 Identities=15% Similarity=-0.001 Sum_probs=79.9
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHH----HHHHHHHhhc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLL----NWMNEFKKWC 253 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~----qW~~e~~~~~ 253 (429)
|....|-|..|+-.++. |.|..+.+|+|||+.+..-+.. .. .....++||||+--|. +|...+.+++
T Consensus 72 g~~p~~VQ~~~i~~ll~------G~Iaem~TGsGKTlaf~LP~l~-~~--l~g~~vlVltPTreLA~Q~~e~~~~l~~~l 142 (853)
T 2fsf_A 72 GMRHFDVQLLGGMVLNE------RCIAEMRTGEGKTLTATLPAYL-NA--LTGKGVHVVTVNDYLAQRDAENNRPLFEFL 142 (853)
T ss_dssp SCCCCHHHHHHHHHHHS------SEEEECCTTSCHHHHHHHHHHH-HH--TTSSCCEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCChHHHhhcccccC------CeeeeecCCchHHHHHHHHHHH-HH--HcCCcEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 34566888888865542 3388899999999876433321 11 1234689999996553 3777777776
Q ss_pred CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHH-----HHh----hhhhccCceEEEecCccccc
Q psy10683 254 PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI-----RER----GVFKKFNWRYLVIDEAHRIK 315 (429)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~-----~~~----~~l~~~~~~~vIiDEaH~~k 315 (429)
++++.+++|.......... ...||++.|...+. ... ..+......++||||||++-
T Consensus 143 -gl~v~~i~GG~~~~~r~~~-----~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 143 -GLTVGINLPGMPAPAKREA-----YAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp -TCCEEECCTTCCHHHHHHH-----HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred -CCeEEEEeCCCCHHHHHHh-----cCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 6788887776543222111 13689999988773 221 12333467899999999875
No 82
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.93 E-value=5.1e-05 Score=80.27 Aligned_cols=123 Identities=16% Similarity=0.060 Sum_probs=80.8
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWC 253 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~ 253 (429)
|....|-|..|+-.+. .|. |..+.+|.|||+.+..-+. +.. -....++||+|+--|.. |...+.+++
T Consensus 81 G~~pt~VQ~~~ip~ll----~G~--Iaea~TGeGKTlaf~LP~~-l~a--L~g~~vlVltptreLA~qd~e~~~~l~~~l 151 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALH----DGN--IAEMKTGEGKTLTSTLPVY-LNA--LTGKGVHVVTVNEYLASRDAEQMGKIFEFL 151 (844)
T ss_dssp SCCCCHHHHHHHHHHH----TTS--EEECCTTSCHHHHHHHHHH-HHH--TTSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHhhHHHh----CCC--EEEccCCcHHHHHHHHHHH-HHH--HcCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 3455678888876554 233 8889999999987643332 111 12346899999965543 888888877
Q ss_pred CCCceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHH-----HHHh----hhhhccCceEEEecCccccc
Q psy10683 254 PTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMC-----IRER----GVFKKFNWRYLVIDEAHRIK 315 (429)
Q Consensus 254 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l-----~~~~----~~l~~~~~~~vIiDEaH~~k 315 (429)
++++.+++|.......... ...||++.|...+ +... ..+......++|||||+++-
T Consensus 152 -gl~v~~i~gg~~~~~r~~~-----~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 152 -GLTVGLNLNSMSKDEKREA-----YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp -TCCEEECCTTSCHHHHHHH-----HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred -CCeEEEEeCCCCHHHHHHh-----cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhh
Confidence 6788887776543322111 1368999998887 3322 12333467899999999974
No 83
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.89 E-value=3.2e-05 Score=81.18 Aligned_cols=122 Identities=12% Similarity=0.036 Sum_probs=76.4
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhc
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVM 276 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 276 (429)
++...++..++|+|||..++..+. . .+..++++|. .+..|+.+.+.+. +..+....|..... . ..
T Consensus 154 ~rk~vlv~apTGSGKT~~al~~l~---~----~~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~~i---v--~T 219 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQKYF---S----AKSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEERVT---V--QP 219 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH---H----SSSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCEEC---C--ST
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH---h----cCCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCeeEE---e--cC
Confidence 345678899999999995544332 2 1334888999 5567788888775 55676777754320 0 00
Q ss_pred CCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCch--hHHHHHHHhccC--CcEEEEeCC
Q psy10683 277 MPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEK--SKLSEIVREFKT--TNRLLLTGT 339 (429)
Q Consensus 277 ~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~--s~~~~~~~~l~~--~~r~~lTgT 339 (429)
.....+++++|.+.+. ....+++|||||+|++.+.. ......+..+.. .+.+++|+|
T Consensus 220 pGr~~~il~~T~e~~~------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 220 NGKQASHVSCTVEMCS------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp TCCCCSEEEEEGGGCC------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGG
T ss_pred CCcccceeEecHhHhh------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccch
Confidence 0113578888876542 12356999999999986532 234456666652 344666777
No 84
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.70 E-value=0.00036 Score=70.06 Aligned_cols=141 Identities=12% Similarity=0.102 Sum_probs=82.8
Q ss_pred CCChHHHHHHHHHHHHHHhcCC-CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGI-NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~-~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~ 257 (429)
..|-+.|.+++..+......+. ..++....|+|||..+.+++..+..... ..+++++|......-..+ .. ...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa~~l~~---~~-~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAKKILSK---LS-GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHHHHHHH---HH-SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHHHHHHh---hh-ccc
Confidence 4788999999998887766655 5677899999999999888888766322 468889998664432222 11 001
Q ss_pred eEEEeCChhhHHHHHH-hhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEE
Q psy10683 258 AICLIGDQDARNAMIR-DVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLL 336 (429)
Q Consensus 258 ~~~~~g~~~~~~~~~~-~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~l 336 (429)
...++ .... ..........+... ..-....+++|||||+|.+.. ......+..+....++++
T Consensus 98 ~~T~h-------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~iiiDE~~~~~~--~~~~~l~~~~~~~~~~~~ 160 (459)
T 3upu_A 98 ASTIH-------SILKINPVTYEENVLFEQK--------EVPDLAKCRVLICDEVSMYDR--KLFKILLSTIPPWCTIIG 160 (459)
T ss_dssp EEEHH-------HHHTEEEEECSSCEEEEEC--------SCCCCSSCSEEEESCGGGCCH--HHHHHHHHHSCTTCEEEE
T ss_pred hhhHH-------HHhccCcccccccchhccc--------ccccccCCCEEEEECchhCCH--HHHHHHHHhccCCCEEEE
Confidence 11100 0000 00000000011000 001123578999999998742 334444455566788999
Q ss_pred eCCccC
Q psy10683 337 TGTPLQ 342 (429)
Q Consensus 337 TgTP~~ 342 (429)
.|=|-|
T Consensus 161 vGD~~Q 166 (459)
T 3upu_A 161 IGDNKQ 166 (459)
T ss_dssp EECTTS
T ss_pred ECCHHH
Confidence 998776
No 85
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.68 E-value=0.00013 Score=76.46 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=51.9
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccch-HHHHHHHHHhh
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKST-LLNWMNEFKKW 252 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~l-l~qW~~e~~~~ 252 (429)
...|-+.|.+||...+. ...-.++..++|+|||.+.+.++..+... ..++||++|++. +.+-.+.+...
T Consensus 187 ~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp STTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 45799999999987653 23346889999999999999888877652 458999999844 55555556543
No 86
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.55 E-value=0.00046 Score=71.16 Aligned_cols=131 Identities=14% Similarity=0.171 Sum_probs=82.7
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLR 257 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~ 257 (429)
+..|-+.|.+++..+. .+...++.-..|+|||.++.+++..+.. ...++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTKAVADLAES---LGLEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEecCcHHHHHHhHhhhc----cc
Confidence 5678899999998765 3456788999999999988888776654 24678888998766655544211 00
Q ss_pred eEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEe
Q psy10683 258 AICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLT 337 (429)
Q Consensus 258 ~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lT 337 (429)
...+ ..++. ... . .+ . ...-....+++|||||+|.+.. ......+..+....++++.
T Consensus 256 a~Ti-------h~ll~-~~~----~----~~---~--~~~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~lilv 312 (574)
T 3e1s_A 256 ASTV-------HRLLG-YGP----Q----GF---R--HNHLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGARVLLV 312 (574)
T ss_dssp EEEH-------HHHTT-EET----T----EE---S--CSSSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEEEEE
T ss_pred HHHH-------HHHHc-CCc----c----hh---h--hhhcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEEEEE
Confidence 0000 00000 000 0 00 0 0011223678999999999843 3445556666778899999
Q ss_pred CCccC
Q psy10683 338 GTPLQ 342 (429)
Q Consensus 338 gTP~~ 342 (429)
|-|-|
T Consensus 313 GD~~Q 317 (574)
T 3e1s_A 313 GDTDQ 317 (574)
T ss_dssp ECTTS
T ss_pred ecccc
Confidence 99887
No 87
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.55 E-value=0.00055 Score=71.43 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=89.3
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH-HHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL-LNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll-~qW~~e~~~~~~~~~ 257 (429)
..|.+.|.+|+..++. +...++..++|+|||.++..++..+... ...++||++|++.- .+-.+.+.+. +.+
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--~~~ 250 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLK 250 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT--TCC
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc--CCe
Confidence 3688999999986652 3456788999999999988888766542 35688999999654 4444445432 122
Q ss_pred eEEEeCChh-----------------------hHHH-----------------HHH------hhcCCCCccEEEcchHHH
Q psy10683 258 AICLIGDQD-----------------------ARNA-----------------MIR------DVMMPGEWDVCITSYEMC 291 (429)
Q Consensus 258 ~~~~~g~~~-----------------------~~~~-----------------~~~------~~~~~~~~dvvitty~~l 291 (429)
++-..+... .... .+. ........+||++|...+
T Consensus 251 ~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 251 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred EEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 211111000 0000 000 000112456787776554
Q ss_pred HHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccC
Q psy10683 292 IRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 342 (429)
Q Consensus 292 ~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~ 342 (429)
.. ..+....|++||||||.....+. ..+..+....++++-|=|-|
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 375 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred cc--hhhhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhc
Confidence 32 23556789999999997765432 12233344578999998876
No 88
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00074 Score=72.33 Aligned_cols=149 Identities=13% Similarity=0.199 Sum_probs=89.4
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH-HHHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL-LNWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll-~qW~~e~~~~~~~~~ 257 (429)
..|.+.|.+|+..++. +.-.++...+|+|||.++..++..+... ...++||++|++.- .+-.+.+.+.. .+
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~g--~~ 430 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDLG--LK 430 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHTT--CC
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhhC--cc
Confidence 4688999999986642 3346788999999999988888766542 35689999999654 44445555431 22
Q ss_pred eEEEeCChh----------------------hHHH-----------------HHH------hhcCCCCccEEEcchHHHH
Q psy10683 258 AICLIGDQD----------------------ARNA-----------------MIR------DVMMPGEWDVCITSYEMCI 292 (429)
Q Consensus 258 ~~~~~g~~~----------------------~~~~-----------------~~~------~~~~~~~~dvvitty~~l~ 292 (429)
++-...... .... .+. ........+||++|...+.
T Consensus 431 ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 510 (802)
T 2xzl_A 431 VVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG 510 (802)
T ss_dssp EEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG
T ss_pred EEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC
Confidence 221111000 0000 000 0001124568887776553
Q ss_pred HHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccC
Q psy10683 293 RERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 342 (429)
Q Consensus 293 ~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~ 342 (429)
. ..+.. .|++||||||+.+..+. ..+..+....++++-|=|-|
T Consensus 511 ~--~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 511 D--KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp C--TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred h--HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCccc
Confidence 2 23444 89999999998864332 23333445678999998876
No 89
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.37 E-value=0.00095 Score=71.42 Aligned_cols=149 Identities=17% Similarity=0.229 Sum_probs=88.5
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHH-HHHHHHHhhcCCCc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLL-NWMNEFKKWCPTLR 257 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~-qW~~e~~~~~~~~~ 257 (429)
..|.+.|.+|+..++. +.-.++...+|+|||.++..++..+... ...++||++|++.-. +-.+.+.+. +.+
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--g~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT--TCC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh--Ccc
Confidence 4688999999986642 3446888999999999988888776542 356889999996543 334444432 122
Q ss_pred eEEEeCChhh------------H------------HHHH-----------------Hh------hcCCCCccEEEcchHH
Q psy10683 258 AICLIGDQDA------------R------------NAMI-----------------RD------VMMPGEWDVCITSYEM 290 (429)
Q Consensus 258 ~~~~~g~~~~------------~------------~~~~-----------------~~------~~~~~~~dvvitty~~ 290 (429)
++-+ |.... . ..+. .. .......+||++|...
T Consensus 427 vvRl-g~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~ 505 (800)
T 2wjy_A 427 VVRL-CAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG 505 (800)
T ss_dssp EEEC-CCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGG
T ss_pred eEee-cccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhh
Confidence 2111 11100 0 0000 00 0001234677777655
Q ss_pred HHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccC
Q psy10683 291 CIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 342 (429)
Q Consensus 291 l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~ 342 (429)
+.. ..+....|++||||||.....+. ..+..+....+++|-|=|.|
T Consensus 506 ~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 506 AGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp GGC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred hCC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEeccccc
Confidence 432 23556689999999997764332 22333445678999998776
No 90
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.12 E-value=0.0032 Score=65.33 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc-ccCCCeEEEeccchHHHHH-HHHHhhcCCCce-
Q psy10683 182 RDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR-NIAGPHIVIVPKSTLLNWM-NEFKKWCPTLRA- 258 (429)
Q Consensus 182 r~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~-~~~~~~LIV~P~~ll~qW~-~e~~~~~~~~~~- 258 (429)
-+.|..++.... .+...++...+|+|||.++..++..+.... ....++++++|+.....-. +.+......+.+
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 478999987654 355678899999999988877777665421 2234788889996655433 333322110000
Q ss_pred -EEEeCChhhHHHHHHhhcCCCCcc-EEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEE
Q psy10683 259 -ICLIGDQDARNAMIRDVMMPGEWD-VCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLL 336 (429)
Q Consensus 259 -~~~~g~~~~~~~~~~~~~~~~~~d-vvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~l 336 (429)
....+... .. ...+ ++-.+.....-.........++++|||||+.+. .......+..+....+++|
T Consensus 227 ~~~~~~~~~-------~~---~Tih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 227 DEQKKRIPE-------DA---STLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp SCCCCSCSC-------CC---BTTTSCC-----------CTTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCEEEE
T ss_pred HHHHhccch-------hh---hhhHhhhccCCCchHHHhccCCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCCEEEE
Confidence 00000000 00 0000 000000000000011122368899999999774 2345566777788889999
Q ss_pred eCCccCC
Q psy10683 337 TGTPLQN 343 (429)
Q Consensus 337 TgTP~~n 343 (429)
.|=|-|-
T Consensus 295 vGD~~QL 301 (608)
T 1w36_D 295 LGDRDQL 301 (608)
T ss_dssp EECTTSG
T ss_pred Ecchhhc
Confidence 9987654
No 91
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.80 E-value=0.025 Score=54.96 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=88.6
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccch-HHHHHHHHHhhc---C
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKST-LLNWMNEFKKWC---P 254 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~l-l~qW~~e~~~~~---~ 254 (429)
..|.|||+..+..+. ..+..++.-.-+.|||..+.+++.+.... .....+++++|..- ...+.+.+..++ |
T Consensus 162 ~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 478999999887663 23447788889999999887776654432 33446778888742 222445555443 3
Q ss_pred C-CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHh-cc--C
Q psy10683 255 T-LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE-FK--T 330 (429)
Q Consensus 255 ~-~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~-l~--~ 330 (429)
. ++......+... + . ...+..-.++++ +.+.+.....+++|+||+|.+.+. .....++.. +. .
T Consensus 237 ~ll~~~~~~~~~~~----I-~-f~nGs~i~~lsa------~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~ 303 (385)
T 2o0j_A 237 DFLQPGIVEWNKGS----I-E-LDNGSSIGAYAS------SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGR 303 (385)
T ss_dssp TTTSCCEEEECSSE----E-E-ETTSCEEEEEEC------SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTT
T ss_pred HhhhhhhccCCccE----E-E-eCCCCEEEEEEC------CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCC
Confidence 3 111110000000 0 0 011221122222 344566778899999999999762 233344332 22 3
Q ss_pred CcEEEEeCCccCCCHHHHHHHHhh
Q psy10683 331 TNRLLLTGTPLQNNLHELWALLNF 354 (429)
Q Consensus 331 ~~r~~lTgTP~~n~~~dl~~ll~f 354 (429)
..++++++||-..+ -+|.+...
T Consensus 304 ~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 304 RSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp CCEEEEEECCCSSS--HHHHHHHH
T ss_pred CCcEEEEeCCCCch--hHHHHHHH
Confidence 57899999996654 55555544
No 92
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.63 E-value=0.024 Score=59.06 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc-ccCCCeEEEeccchH-HHHHHHHHhhc
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR-NIAGPHIVIVPKSTL-LNWMNEFKKWC 253 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~-~~~~~~LIV~P~~ll-~qW~~e~~~~~ 253 (429)
.|.+.|.++|. ...+..++....|+|||.+.+.-+.++.... .....+|+|+++.-. .+-.+.+.+..
T Consensus 9 ~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 68899999995 2234567778899999999999888877642 244678999987543 44445555543
No 93
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.44 E-value=0.0061 Score=52.97 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=25.6
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK 239 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~ 239 (429)
-++.-+||.|||..++.++..+.. ...+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~---~g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL---GKKKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---TTCEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeec
Confidence 356788999999998887765543 23467888776
No 94
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.43 E-value=0.0083 Score=59.25 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=68.7
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCC
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGE 280 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 280 (429)
.++....|+|||......+. .++.||++|. .+...|.+.+.+.. .. ..
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~----------~~-------------~~ 212 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANASG----------II-------------VA 212 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTTS----------CC-------------CC
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcC----------cc-------------cc
Confidence 46788999999987765542 1577999999 55566887774320 00 00
Q ss_pred ccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCccC
Q psy10683 281 WDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 342 (429)
Q Consensus 281 ~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~~ 342 (429)
-..-+.|++.+............++|||||+..+- ...+...+..+.+ .++++.|=|-|
T Consensus 213 ~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Q 271 (446)
T 3vkw_A 213 TKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQ 271 (446)
T ss_dssp CTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTS
T ss_pred ccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCccc
Confidence 11336777776554443333458999999999873 2334444444444 89999998865
No 95
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.39 E-value=0.012 Score=60.97 Aligned_cols=147 Identities=15% Similarity=0.139 Sum_probs=83.6
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc-hHHHHHHHHHhhc---C
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS-TLLNWMNEFKKWC---P 254 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~-ll~qW~~e~~~~~---~ 254 (429)
..|.|||...+..+. ..+..++.-.-|.|||..+.+++.+.... .....++++.|.. ......+.+..++ |
T Consensus 162 ~~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHT-SSSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred CcCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHh-CCCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 478999999887652 24557888889999999877666554442 2334678888873 2333445666554 3
Q ss_pred C-CceEEEeCChhhHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccccCchhHHHHHHHhc-c--C
Q psy10683 255 T-LRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-K--T 330 (429)
Q Consensus 255 ~-~~~~~~~g~~~~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~--~ 330 (429)
. +.......+.. .........+...+ .+...+.....+++|+||+|.+.+.. .+..++... . .
T Consensus 237 ~~~~~~~~~~~~~-------~i~~~nGs~i~~~s-----~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~~ 303 (592)
T 3cpe_A 237 DFLQPGIVEWNKG-------SIELDNGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGR 303 (592)
T ss_dssp TTTSCCEEEECSS-------EEEETTSCEEEEEE-----CCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSSS
T ss_pred HhhccccccCCcc-------EEEecCCCEEEEEe-----CCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccCC
Confidence 2 11100000000 00011111222222 12344566678899999999987632 444444432 2 3
Q ss_pred CcEEEEeCCccCC
Q psy10683 331 TNRLLLTGTPLQN 343 (429)
Q Consensus 331 ~~r~~lTgTP~~n 343 (429)
..++++++||-..
T Consensus 304 ~~~ii~isTP~~~ 316 (592)
T 3cpe_A 304 RSKIIITTTPNGL 316 (592)
T ss_dssp CCEEEEEECCCTT
T ss_pred CceEEEEeCCCCc
Confidence 4789999999655
No 96
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.38 E-value=0.01 Score=62.22 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=60.9
Q ss_pred CCChHHHHHHHHHHHHHHhcCCC-eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGIN-GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTL 256 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~-~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~ 256 (429)
..+.+.|-.++.-+......+.. .+|...+|+|||+++..++... .+|+|||+|. .+..||.++|..++|+.
T Consensus 7 ~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~------~~~~lvv~~~~~~A~ql~~el~~~~~~~ 80 (664)
T 1c4o_A 7 PSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELFPEN 80 (664)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh------CCCEEEEecCHHHHHHHHHHHHHHCCCC
Confidence 46778999999888777766653 4677889999999988776543 4589999999 66788999999999876
Q ss_pred ceEEEe
Q psy10683 257 RAICLI 262 (429)
Q Consensus 257 ~~~~~~ 262 (429)
.+..+.
T Consensus 81 ~V~~fp 86 (664)
T 1c4o_A 81 AVEYFI 86 (664)
T ss_dssp EEEECC
T ss_pred eEEEcC
Confidence 554443
No 97
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.38 E-value=0.021 Score=51.14 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=63.8
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEEeCChhhHHHHHHhhcCCCCc
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEW 281 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 281 (429)
.++.-+||.|||..++.++..+.. ...+++++.|.---. .+ ...... .|.. ..
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d~r---~~-~~i~sr------lG~~--------------~~ 67 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKIDTR---SI-RNIQSR------TGTS--------------LP 67 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCCGG---GC-SSCCCC------CCCS--------------SC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccCch---HH-HHHHHh------cCCC--------------cc
Confidence 456789999999999888766544 244677776653100 00 000100 0100 00
Q ss_pred cEEEcchHHHHHHhh-hhhccCceEEEecCcccccCchhHHHHHHHhc-cCCcEEEEeCC-------ccCCCHHHHHHHH
Q psy10683 282 DVCITSYEMCIRERG-VFKKFNWRYLVIDEAHRIKNEKSKLSEIVREF-KTTNRLLLTGT-------PLQNNLHELWALL 352 (429)
Q Consensus 282 dvvitty~~l~~~~~-~l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l-~~~~r~~lTgT-------P~~n~~~dl~~ll 352 (429)
.+.+.+.+.+..... .+....+++|||||+|.+... ....+..+ .....++++|- |+.. ..+|..+.
T Consensus 68 ~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~-~~~Ll~lA 143 (223)
T 2b8t_A 68 SVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGLDKNFKGEPFGP-IAKLFTYA 143 (223)
T ss_dssp CEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTT-HHHHHHHC
T ss_pred ccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEeccccccCCcCCC-cHHHHHHh
Confidence 122333333322221 223345899999999997542 33333333 23677899996 3333 35555554
Q ss_pred hh
Q psy10683 353 NF 354 (429)
Q Consensus 353 ~f 354 (429)
+.
T Consensus 144 D~ 145 (223)
T 2b8t_A 144 DK 145 (223)
T ss_dssp SE
T ss_pred he
Confidence 44
No 98
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=96.30 E-value=0.037 Score=57.76 Aligned_cols=76 Identities=22% Similarity=0.181 Sum_probs=51.0
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH----HHHHHHhhc
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN----WMNEFKKWC 253 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q----W~~e~~~~~ 253 (429)
|...++-|+-|.-.|. .|.|.-+.+|.|||+++.. .+++.. -..+.+.||+|+.-|.. |...+-+|+
T Consensus 73 g~r~~dvQligg~~L~------~G~iaEM~TGEGKTLva~l-p~~lnA--L~G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 73 GMRPFDVQVMGGIALH------EGKVAEMKTGEGKTLAATM-PIYLNA--LIGKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp SCCCCHHHHHHHHHHH------TTCEEECCTTSCHHHHTHH-HHHHHH--TTSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHh------CCChhhccCCCCccHHHHH-HHHHHH--hcCCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 4455566777664442 4668889999999997643 333322 12456889999977744 999999988
Q ss_pred CCCceEEEeC
Q psy10683 254 PTLRAICLIG 263 (429)
Q Consensus 254 ~~~~~~~~~g 263 (429)
++.+.+...
T Consensus 144 -glsvg~i~~ 152 (822)
T 3jux_A 144 -GLRVGVINS 152 (822)
T ss_dssp -TCCEEEEET
T ss_pred -CCEEEEEcC
Confidence 466666555
No 99
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.19 E-value=0.038 Score=48.98 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=25.7
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS 240 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ 240 (429)
++.-+||.|||..++..+..... ...+++|+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~---~g~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQF---AKQHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEecc
Confidence 35789999999988887765533 356788888763
No 100
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.93 E-value=0.027 Score=58.92 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=60.9
Q ss_pred CCChHHHHHHHHHHHHHHhcCCC-eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCC
Q psy10683 179 GEMRDYQVRGLNWMISLYENGIN-GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTL 256 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~-~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~ 256 (429)
..++.+|..++.-+......+.. ..+..-+|+|||+++..++... .+|+|||+|. ....||.+++..|+|+.
T Consensus 11 ~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~------~~~~lvv~~~~~~A~~l~~el~~~~~~~ 84 (661)
T 2d7d_A 11 YQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV------NKPTLVIAHNKTLAGQLYSEFKEFFPNN 84 (661)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------CCCEEEECSSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 46678999999888877777654 5677889999999887776433 4589999999 56678999999999876
Q ss_pred ceEEEe
Q psy10683 257 RAICLI 262 (429)
Q Consensus 257 ~~~~~~ 262 (429)
.+..+.
T Consensus 85 ~v~~fp 90 (661)
T 2d7d_A 85 AVEYFV 90 (661)
T ss_dssp EEEEEC
T ss_pred cEEEcc
Confidence 555444
No 101
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=95.92 E-value=0.0024 Score=69.92 Aligned_cols=40 Identities=28% Similarity=0.256 Sum_probs=34.8
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
..|+|||.+++.|+... .+.+++|||+||+|||++.+.++
T Consensus 152 ~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i 191 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMIL 191 (968)
T ss_dssp SCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHH
Confidence 58999999999998763 36789999999999999988765
No 102
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.89 E-value=0.029 Score=48.98 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=25.7
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK 239 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~ 239 (429)
++..+||+|||..++..+..... ...+++|+.|.
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~ 45 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPE 45 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEec
Confidence 55788999999988877765543 35678888876
No 103
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.72 E-value=0.15 Score=48.06 Aligned_cols=45 Identities=13% Similarity=-0.057 Sum_probs=29.0
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMN 247 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~ 247 (429)
.+.+|..++|+|||..+-+++..+... ..+++.+....+...+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~~ 82 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMVE 82 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHHH
Confidence 356789999999999988887766542 345555544444333333
No 104
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.47 E-value=0.048 Score=50.91 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=26.7
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhccc-CCCeEEEeccch
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNI-AGPHIVIVPKST 241 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~-~~~~LIV~P~~l 241 (429)
+.+|.-++|+|||..+-+++..+...... ..+++.+.+..+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 35789999999999998888776543222 234444444333
No 105
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.35 E-value=0.15 Score=45.65 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=24.9
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK 239 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~ 239 (429)
++..+||.|||..++..+.... ....+++|+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeec
Confidence 4578899999988877765443 345678888765
No 106
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.27 E-value=0.1 Score=49.57 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCC---eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 181 MRDYQVRGLNWMISLYENGIN---GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~---~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
+.|+|.+.+..+...+.++.. -++..+.|+|||..+..++..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 468999999888888776652 467899999999999999887754
No 107
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.09 E-value=0.2 Score=43.57 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=19.4
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
+.++..+.|+|||..+-.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999998887776553
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.03 E-value=0.48 Score=40.15 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHh-----cCCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 183 DYQVRGLNWMISLYE-----NGINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~-----~~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
+.|.+++..+..... .+.+.+|.-+.|+|||..+-+++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578888888776553 344567789999999999888877665
No 109
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.83 E-value=0.15 Score=47.91 Aligned_cols=51 Identities=16% Similarity=0.299 Sum_probs=30.8
Q ss_pred CceEEEecCccccc-C-chhHHHHHHHhccCCcEEEEeCCccCCCHHHHHHHH
Q psy10683 302 NWRYLVIDEAHRIK-N-EKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 352 (429)
Q Consensus 302 ~~~~vIiDEaH~~k-n-~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~~ll 352 (429)
...+|||||+|.+. . ....+.+.+.......++++|.++...-...+.+-+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 56899999999985 2 112233334444566788888877554334444433
No 110
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.74 E-value=0.14 Score=48.67 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=24.0
Q ss_pred HHHHHhcC--CCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 192 MISLYENG--INGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 192 l~~~~~~~--~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
+......+ .+.+|..+.|+|||..+-+++..+.
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444444 3578899999999999888877654
No 111
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.11 Score=50.50 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=35.0
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKK 251 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~ 251 (429)
..|.+|.-++|+|||+.+-+++.... .+++.|....++..|..|-.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~------~~f~~v~~s~l~sk~vGese~ 228 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTD------CKFIRVSGAELVQKYIGEGSR 228 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHT------CEEEEEEGGGGSCSSTTHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhC------CCceEEEhHHhhccccchHHH
Confidence 35678899999999999988876543 367777787887777655433
No 112
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.31 E-value=0.097 Score=49.44 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=25.9
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNW 245 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW 245 (429)
+.+|.-++|+|||..+-+++..+ ..+++.|....+...|
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKW 91 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHHHTTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHHhhcc
Confidence 45779999999999988776543 2345555444444433
No 113
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.26 E-value=0.093 Score=48.34 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=18.9
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~ 222 (429)
+.+.+|..++|+|||..+-+++..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 345678999999999988777654
No 114
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.20 E-value=0.38 Score=46.06 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHH-hcC--CCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 182 RDYQVRGLNWMISLY-ENG--INGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 182 r~~Q~~~v~~l~~~~-~~~--~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|..+.+.+...+... ..+ ...+|.-+.|+|||..+-.++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554333333 222 23577899999999998888776644
No 115
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.18 E-value=0.58 Score=46.21 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=26.2
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccch
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKST 241 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~l 241 (429)
.+.+|..+.|+|||..+-++...+... ....+++.+....+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKF 171 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHH
Confidence 356789999999999888877666442 22334444433333
No 116
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.13 E-value=0.27 Score=43.51 Aligned_cols=39 Identities=10% Similarity=-0.112 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhc--CCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 187 RGLNWMISLYEN--GINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 187 ~~v~~l~~~~~~--~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.++..+...... +.+.++.-+.|+|||..+-+++..+..
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444444444433 445678999999999998887766544
No 117
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.08 E-value=0.013 Score=58.07 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=32.2
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
..|+|||.+++.|+... ++++++.+|+|||++.+..+
T Consensus 8 ~~l~~~Q~~~i~~~~~~-----~~ll~~~tG~GKT~~~~~~~ 44 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-----NCLIVLPTGLGKTLIAMMIA 44 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-----CEEEECCTTSCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhhC-----CEEEEcCCCCCHHHHHHHHH
Confidence 47999999999998542 89999999999999988764
No 118
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.07 E-value=0.2 Score=48.10 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=19.2
Q ss_pred CeEeecCCCCCHHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l 223 (429)
+.+|.-++|+|||..+-+++..+
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 46789999999999998887654
No 119
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.06 E-value=0.24 Score=41.70 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=20.4
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.+.+|.-+.|+|||..+-+++..+..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34677899999999998888766543
No 120
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.06 E-value=0.094 Score=43.16 Aligned_cols=25 Identities=24% Similarity=0.154 Sum_probs=19.7
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHHH
Q psy10683 197 ENGINGILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~~ 221 (429)
..+.+.++.-++|+|||..+-++..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Confidence 4556788999999999998866653
No 121
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.00 E-value=0.43 Score=42.16 Aligned_cols=35 Identities=20% Similarity=0.096 Sum_probs=24.0
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS 240 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ 240 (429)
++.-+||.|||...+..+..+.. ...+++|+.|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~---~g~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIY---AKQKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH---TTCCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---cCCceEEEEecc
Confidence 56788999999877776644433 245678887753
No 122
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.83 E-value=0.26 Score=42.83 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=24.0
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK 239 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~ 239 (429)
++..+||+|||...+..+..... ...+++++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~---~~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH---TTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEccc
Confidence 55889999999776666654433 23677888776
No 123
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.65 E-value=0.38 Score=42.18 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=18.9
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
..++.-+.|+|||..+-.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 357789999999998877776553
No 124
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.34 E-value=0.36 Score=45.24 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCC--CeEeecCCCCCHHHHHHHHHH
Q psy10683 185 QVRGLNWMISLYENGI--NGILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~--~~ilad~~GlGKT~~~i~~~~ 221 (429)
|.+++..+.....++. .-++..+.|.|||..+.+++.
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4556666666666655 347799999999998877764
No 125
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.28 E-value=0.28 Score=47.55 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=25.1
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNW 245 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW 245 (429)
.+.+|.-++|+|||..+-+++..+ ..+++.|.+..+...|
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSKY 188 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC----
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhccc
Confidence 456789999999999887775432 3355555555554443
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.19 E-value=0.4 Score=45.78 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=21.1
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
+.+.++..+.|+|||..+-.++..+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345678999999999998888766543
No 127
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.02 E-value=1.5 Score=36.58 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=20.7
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.+.+|..+.|+|||..+-+++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34678999999999998888776543
No 128
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.87 E-value=0.39 Score=43.26 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=18.4
Q ss_pred CeEeecCCCCCHHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l 223 (429)
+.+|.-++|+|||..+-+++..+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45778999999999887776543
No 129
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.81 E-value=0.36 Score=44.93 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=19.6
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
+.++..+.|+|||..+-.++..+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 367899999999998888876653
No 130
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.54 E-value=0.38 Score=44.87 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCC--CeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 189 LNWMISLYENGI--NGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 189 v~~l~~~~~~~~--~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
+..+......+. +.++..+.|+|||..+-+++..+.
T Consensus 34 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 34 VKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 333334444443 467799999999999888876653
No 131
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.38 E-value=0.51 Score=48.67 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 186 VRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 186 ~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
..++..+......+...+|.-+.|+|||..+-++...+
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 34444455555677788999999999999887777644
No 132
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.22 E-value=0.77 Score=43.71 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHhcCC----CeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 182 RDYQVRGLNWMISLYENGI----NGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 182 r~~Q~~~v~~l~~~~~~~~----~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
++.+..++..+......+. +.+|.-++|+|||..+-+++..+.
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4666777777776666544 357799999999999988877653
No 133
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.02 E-value=0.19 Score=47.49 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=19.2
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
.+.+|.-++|+|||..+-+++..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 345779999999999988877644
No 134
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.88 E-value=1.9 Score=41.04 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=19.2
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
..++..+.|+|||..+-+++..+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 467789999999998877776553
No 135
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.87 E-value=0.36 Score=47.80 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=24.0
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNW 245 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW 245 (429)
.+.+|.-++|+|||..+-+++..+ ...+++.|....++..|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 345779999999999988777543 12345555555554444
No 136
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.86 E-value=0.3 Score=47.88 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=32.9
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~ 249 (429)
.|.+|.-++|+|||+.|-+++..+. .+++.|....++..|..|-
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~~s~l~sk~vGes 260 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVGSELIQKYLGDG 260 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEESGGGCCSSSSHH
T ss_pred CCCceECCCCchHHHHHHHHHHHhC------CCEEEEEHHHhhhccCchH
Confidence 4567799999999999988886543 3677777777777665543
No 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.85 E-value=0.49 Score=44.03 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=26.3
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNW 245 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW 245 (429)
+.+.+|.-++|+|||..+-+++..+ ..+++.|....++..|
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 89 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEhHHHHhhh
Confidence 3456789999999999887777543 2345555444444433
No 138
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.64 E-value=1 Score=41.52 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=20.1
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
+.+.+|.-++|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4457889999999999887777654
No 139
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.64 E-value=7.7 Score=36.29 Aligned_cols=44 Identities=2% Similarity=-0.175 Sum_probs=30.0
Q ss_pred hHHHHHHHH-HHHHHHhcCC--CeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 182 RDYQVRGLN-WMISLYENGI--NGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 182 r~~Q~~~v~-~l~~~~~~~~--~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
|+-|...+. ++......+. +.++.-.+|+|||.++-.++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455666554 3444443333 3567899999999999988887765
No 140
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.62 E-value=1.2 Score=44.04 Aligned_cols=59 Identities=14% Similarity=0.053 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHH
Q psy10683 189 LNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249 (429)
Q Consensus 189 v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~ 249 (429)
+..+...+..|.-.+++..+|+|||..++.++...... ...+++++....-..++...+
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSSCHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECCCCHHHHHHHH
Confidence 33343333344446889999999999998888766531 245788887665455554443
No 141
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=91.58 E-value=0.12 Score=53.23 Aligned_cols=43 Identities=23% Similarity=0.311 Sum_probs=34.5
Q ss_pred CCcccHHHHHHHHHHHHhHhcC-cccchhhcccccchhhhhhcc
Q psy10683 33 GGEMRDYQVRGLNWMISLYENG-INGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 33 ~~~l~~~q~~g~~~~~~~~~~~-~~~~l~~~~~~~k~~~~~~~~ 75 (429)
+..|||||.++++|+...+.++ .+++++..+|.|||+..+.++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~ 219 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQIS 219 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHH
Confidence 3589999999999998877766 457999999999999977654
No 142
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.57 E-value=0.14 Score=41.98 Aligned_cols=23 Identities=13% Similarity=-0.026 Sum_probs=17.5
Q ss_pred hcCCCeEeecCCCCCHHHHHHHH
Q psy10683 197 ENGINGILADEMGLGKTLQTISL 219 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~ 219 (429)
..+.+.++.-++|+|||..+-++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 34556788999999999876443
No 143
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.55 E-value=0.34 Score=46.44 Aligned_cols=37 Identities=22% Similarity=0.137 Sum_probs=24.6
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL 242 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll 242 (429)
.+.+|.-++|+|||..+-+++..+ ..+++.|....+.
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~ 154 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSLT 154 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGGC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHhh
Confidence 356779999999999887776543 2345555444443
No 144
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.15 E-value=0.66 Score=42.03 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=19.9
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHHHH
Q psy10683 197 ENGINGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~~~ 222 (429)
..+.+.++.-++|+|||..+-++...
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 44556788999999999887666543
No 145
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.99 E-value=0.2 Score=49.40 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=31.6
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e 248 (429)
.|.+|.-++|+|||+.+-+++..+. .+++.|....++..|..+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGTCCSSSSH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEehhhhccccchH
Confidence 4567799999999999988886543 356777777776666544
No 146
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.82 E-value=0.49 Score=46.83 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=32.5
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~ 249 (429)
..|.+|.-++|+|||+.+-+++..+.. +++.|....++..|..+-
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~------~fi~vs~s~L~sk~vGes 287 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDA------TFIRVIGSELVQKYVGEG 287 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTC------EEEEEEGGGGCCCSSSHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCC------CeEEEEhHHhhcccCCHH
Confidence 345677899999999999888765433 567777777776665443
No 147
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.77 E-value=2.5 Score=40.06 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=19.0
Q ss_pred eEeecCCCCCHHHHHHHHHHHHh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
.++..+.|+|||..+-+++..+.
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999888876654
No 148
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.33 E-value=0.42 Score=46.98 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=30.8
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e 248 (429)
.|.+|..++|+|||..+-+++..+. .+++.|....++..|..+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~~------~~~~~v~~~~l~~~~~Ge 249 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVNGSEFVHKYLGE 249 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHHT------CEEEEEEGGGTCCSSCSH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC------CCeEEEecchhhccccch
Confidence 3567799999999999988876543 356667666666655433
No 149
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.21 E-value=0.47 Score=44.02 Aligned_cols=39 Identities=15% Similarity=-0.021 Sum_probs=26.5
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNW 245 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW 245 (429)
+.+|.-++|+|||..+-+++..+ ..+++.|....+...|
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~~ 76 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESGN 76 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhcc
Confidence 45677999999999998887665 3356666555544433
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.14 E-value=1.4 Score=43.57 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHH
Q psy10683 189 LNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 189 v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e 248 (429)
++.+...+..|.-.+++..+|+|||..++.++..+... ...+++++....-..+....
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r 250 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMR 250 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHH
Confidence 44444334445557889999999999998888766542 23478888755444444433
No 151
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.74 E-value=1.8 Score=40.85 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCC--eEeecCCCCCHHHHHHHHHHHHh
Q psy10683 185 QVRGLNWMISLYENGIN--GILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 185 Q~~~v~~l~~~~~~~~~--~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
|..++..+......+.- .++..+.|+|||..+-+++..+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34455555555555543 67899999999999988887654
No 152
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.26 E-value=2 Score=43.27 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=19.2
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
...+|.-+.|+|||..+-+++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 346779999999999988777654
No 153
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=89.09 E-value=0.19 Score=50.02 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=32.0
Q ss_pred CCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 33 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 33 ~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
+..|+|||.+++.++. ++.++++++.+|.|||+..+..+
T Consensus 91 ~~~l~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i 129 (472)
T 2fwr_A 91 EISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAI 129 (472)
T ss_dssp CCCBCHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHH----hcCCEEEEeCCCCCHHHHHHHHH
Confidence 4589999999999764 33469999999999999987654
No 154
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.03 E-value=1 Score=42.77 Aligned_cols=57 Identities=14% Similarity=0.042 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHH
Q psy10683 189 LNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 189 v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e 248 (429)
+..+...+..|.-.+++..+|+|||..++.++..+.. ...+++++....-..+....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEms~~ql~~R 92 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEMSAEQLALR 92 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSSCHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHH
Confidence 3333333344444688999999999999888876654 35678888766544444433
No 155
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.00 E-value=0.3 Score=45.33 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=19.7
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
+.++..+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 467899999999999888876653
No 156
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=88.79 E-value=2.9 Score=38.83 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=24.4
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI 236 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV 236 (429)
...+.++.-++|+|||..+-++..... ....|++.|
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~---~~~~~~v~v 59 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSA---RSDRPLVTL 59 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSS---CSSSCCCEE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCc---ccCCCeEEE
Confidence 445678899999999988866654322 234566655
No 157
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.70 E-value=1.1 Score=44.28 Aligned_cols=57 Identities=14% Similarity=0.032 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHH
Q psy10683 189 LNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 189 v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e 248 (429)
+..+...+..|.-.+++..+|+|||..++.++...... ..+++++.-..-..+....
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~~ql~~R 243 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKENIKR 243 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCTTHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHH
Confidence 44444334444457889999999999999988776552 4578888755444444443
No 158
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=88.62 E-value=0.19 Score=46.26 Aligned_cols=38 Identities=21% Similarity=0.023 Sum_probs=31.4
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
..|+|||.+++.++... .++++++.+|.|||+..+..+
T Consensus 112 ~~l~~~Q~~ai~~~l~~----~~~ll~~~tGsGKT~~~~~~~ 149 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN----RRRILNLPTSAGRSLIQALLA 149 (282)
T ss_dssp CCCCHHHHHHHHHHHHH----SEEEECCCTTSCHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhc----CCeEEEcCCCCCcHHHHHHHH
Confidence 47999999999987552 557999999999999886654
No 159
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.48 E-value=1.9 Score=40.37 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHH
Q psy10683 189 LNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249 (429)
Q Consensus 189 v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~ 249 (429)
+..+...+..|.-.+++..+|+|||..++.++...... ..+++++.-..-..+....+
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE~s~~~l~~R~ 115 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKENIKRL 115 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESSSCHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECCCCHHHHHHHH
Confidence 33333333444457889999999999998888665442 26788887654444444443
No 160
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.34 E-value=1.7 Score=41.17 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=20.5
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
...++..+.|+|||..+-.++..+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35678899999999988887766544
No 161
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.32 E-value=1 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=17.9
Q ss_pred CCeEeecCCCCCHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~ 221 (429)
.+.+|.-++|+|||..+-++..
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 3567799999999998877754
No 162
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.30 E-value=3 Score=41.03 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=24.4
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
+++...|.|||.++..++.++... ..++++|+
T Consensus 104 livG~~G~GKTTt~~kLA~~l~~~---G~kVllv~ 135 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQKR---GYKVGVVC 135 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred EEECcCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 557789999999999998877652 44666665
No 163
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=88.25 E-value=2.7 Score=41.81 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=18.4
Q ss_pred CCeEeecCCCCCHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~ 222 (429)
.+.+|.-++|+|||..+-++...
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35677999999999988777653
No 164
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.70 E-value=0.97 Score=44.72 Aligned_cols=22 Identities=32% Similarity=0.289 Sum_probs=17.8
Q ss_pred CeEeecCCCCCHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~ 222 (429)
+.+|.-++|+|||..+-++...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4688999999999988766654
No 165
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.63 E-value=2.6 Score=39.73 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHH-hcCC--CeEeecCCCCCHHHHHHHHHHHH
Q psy10683 185 QVRGLNWMISLY-ENGI--NGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 185 Q~~~v~~l~~~~-~~~~--~~ilad~~GlGKT~~~i~~~~~l 223 (429)
|...+..+.... ..+. +.++..+.|+|||..+-+++..+
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344555555544 3332 36778999999999887777644
No 166
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=86.77 E-value=3.4 Score=40.58 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=23.9
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
+++-..|.|||.++..++.++.. ..+.+++|+
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~---~G~kVllv~ 132 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKK---RGYKVGLVA 132 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEe
Confidence 55788999999999888877754 245666665
No 167
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=86.68 E-value=1 Score=46.90 Aligned_cols=68 Identities=9% Similarity=-0.032 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc-ccCCCeEEEeccc-hHHHHHHHHHhhc
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR-NIAGPHIVIVPKS-TLLNWMNEFKKWC 253 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~-~~~~~~LIV~P~~-ll~qW~~e~~~~~ 253 (429)
.|.+.|.++|.. ..+..++....|+|||.+.+.-+.++.... .....+|+|+.+. ....-.+.+.+..
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 477899999963 234556778899999999988887776542 2456789988664 4444555565554
No 168
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=86.47 E-value=0.85 Score=42.02 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=18.4
Q ss_pred CCeEeecCCCCCHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~ 222 (429)
.+.+|..++|+|||..+-+++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45677999999999988777653
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.29 E-value=7.3 Score=33.47 Aligned_cols=43 Identities=9% Similarity=-0.035 Sum_probs=27.9
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc--hHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS--TLLNWMN 247 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~--ll~qW~~ 247 (429)
|.-.++.-+.|+|||..+..++. . ..++++++.-.. -...|..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~----~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L----SGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H----HCSEEEEEESSCCCCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H----cCCcEEEEECCCCCCHHHHHH
Confidence 44457889999999998887776 1 234667665433 3344443
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.01 E-value=2.4 Score=38.35 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=18.1
Q ss_pred CeEeecCCCCCHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~ 222 (429)
+.+|.-++|+|||..+-++...
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3577899999999998877764
No 171
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=85.75 E-value=3.4 Score=41.14 Aligned_cols=84 Identities=17% Similarity=0.239 Sum_probs=54.9
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCC-----------h---
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGD-----------Q--- 265 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~-----------~--- 265 (429)
...|..-+|+|||+.+.+++.. ..+|+|||||. ....+|.+++..++|.. +..+... .
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~ 88 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDII 88 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHH
Confidence 3467788999999988776632 35689999998 55677999999998764 4443321 0
Q ss_pred hhHHHHHHhhcCCCCccEEEcchHHHH
Q psy10683 266 DARNAMIRDVMMPGEWDVCITSYEMCI 292 (429)
Q Consensus 266 ~~~~~~~~~~~~~~~~dvvitty~~l~ 292 (429)
..|-..+..... ....|||+|.+.+.
T Consensus 89 ~~Rl~~l~~L~~-~~~~ivv~sv~al~ 114 (483)
T 3hjh_A 89 SSRLSTLYQLPT-MQRGVLIVPVNTLM 114 (483)
T ss_dssp HHHHHHHHHGGG-CCSSEEEEEHHHHH
T ss_pred HHHHHHHHHHHh-CCCCEEEEEHHHHh
Confidence 112222333222 33458899987775
No 172
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=85.72 E-value=0.4 Score=43.01 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=32.5
Q ss_pred cccCCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 30 YIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 30 ~~~~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
...+..|+|||.+++.++. .+..+++...+|.|||...+..+
T Consensus 88 ~~~~~~l~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~ 129 (237)
T 2fz4_A 88 FDAEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAI 129 (237)
T ss_dssp CCCCCCCCHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHH
Confidence 3345689999999998753 33458899999999999887654
No 173
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=85.24 E-value=4.1 Score=35.29 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=67.7
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe-ccchHHHHHHHHHhhcCCCceEEEeCC-----hhhHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV-PKSTLLNWMNEFKKWCPTLRAICLIGD-----QDARNAMIR 273 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~-P~~ll~qW~~e~~~~~~~~~~~~~~g~-----~~~~~~~~~ 273 (429)
...++....|-|||..|++++..... ...+++|+- -+.....=..++-..++ +.+. ..|. ...+.....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~vQF~Kg~~~~gE~~~l~~L~-v~~~-~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVVQFIKGTWPNGERNLLEPHG-VEFQ-VMATGFTWETQNREADTA 103 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEEESSCCSSCCHHHHHHGGGT-CEEE-ECCTTCCCCGGGHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCCCCCccHHHHHHhCC-cEEE-EcccccccCCCCcHHHHH
Confidence 34577889999999999998865544 355777772 11111111111222221 1111 1111 000000000
Q ss_pred hhcCCCCccEEEcchHHHHHHhhhhhccCceEEEecCcccc----cCchhHHHHHHHhccCCcEEEEeCCccCCCHHHHH
Q psy10683 274 DVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRI----KNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELW 349 (429)
Q Consensus 274 ~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~vIiDEaH~~----kn~~s~~~~~~~~l~~~~r~~lTgTP~~n~~~dl~ 349 (429)
.--..+..-...+..-.+++||+||.-.. --+.......+..-....-+++||--. +.+|.
T Consensus 104 ------------~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a---p~~l~ 168 (196)
T 1g5t_A 104 ------------ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC---HRDIL 168 (196)
T ss_dssp ------------HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC---CHHHH
T ss_pred ------------HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC---cHHHH
Confidence 00122223334455567999999999542 112334555666556667899999754 34444
Q ss_pred HHHhh
Q psy10683 350 ALLNF 354 (429)
Q Consensus 350 ~ll~f 354 (429)
.+.++
T Consensus 169 e~AD~ 173 (196)
T 1g5t_A 169 DLADT 173 (196)
T ss_dssp HHCSE
T ss_pred HhCcc
Confidence 44333
No 174
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.05 E-value=6.9 Score=36.27 Aligned_cols=37 Identities=24% Similarity=0.168 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHH
Q psy10683 182 RDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 182 r~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~ 221 (429)
|+.+.+.+... +..+...++..+.|.|||..+-.++.
T Consensus 17 R~~el~~L~~~---l~~~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 17 REEESRKLEES---LENYPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp CHHHHHHHHHH---HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHH---HhcCCeEEEECCCcCCHHHHHHHHHH
Confidence 45555555433 33355567889999999988766654
No 175
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.96 E-value=2.7 Score=35.96 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhcC------CCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 184 YQVRGLNWMISLYENG------INGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 184 ~Q~~~v~~l~~~~~~~------~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.|..++..+....... .+.+|.-++|+|||..+-+++..+..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 33 GRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp HHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4445555444444333 45678899999999998888766643
No 176
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.76 E-value=2.9 Score=44.22 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=21.4
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
+.+.+|.-++|+|||..+-+++..+..
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345788999999999998888766543
No 177
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=84.34 E-value=2.1 Score=35.11 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=20.7
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
.+...+|.-+.|+|||..+-+++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345567889999999998877776554
No 178
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.77 E-value=3.2 Score=44.55 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=21.2
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.+.+|.-++|+|||..+-+++..+..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 35788999999999998888876644
No 179
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=83.26 E-value=20 Score=30.80 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=26.8
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccc
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKS 240 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ 240 (429)
|.-.++..+.|+|||..+..++..+.. ..++++++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc
Confidence 444577899999999988887765543 245677765443
No 180
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=83.14 E-value=2.2 Score=44.87 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=41.7
Q ss_pred CChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc-ccCCCeEEEeccc
Q psy10683 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR-NIAGPHIVIVPKS 240 (429)
Q Consensus 180 ~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~-~~~~~~LIV~P~~ 240 (429)
.|.|.|.++|.. ..+..++....|+|||.+.+.-+.++.... .....+|+|+.+.
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTn 66 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTN 66 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccH
Confidence 578999999962 244567778899999999998888877632 3446789998864
No 181
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=82.80 E-value=0.49 Score=51.54 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=31.5
Q ss_pred CCcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 33 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 33 ~~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
...++|||.+++.|+. .+.++++++.+|.|||+..+..+
T Consensus 246 ~~~~r~~Q~~ai~~il----~g~~~ll~a~TGsGKTl~~~~~i 284 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILIC 284 (936)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEeCCCchHHHHHHHHH
Confidence 3589999999999984 45789999999999999866543
No 182
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=82.42 E-value=0.53 Score=50.28 Aligned_cols=38 Identities=32% Similarity=0.451 Sum_probs=31.1
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
..++|||.+++.++. .+.++++++.+|.|||+..+..+
T Consensus 247 ~~l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i 284 (797)
T 4a2q_A 247 KKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILIC 284 (797)
T ss_dssp -CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----hCCCEEEEeCCCChHHHHHHHHH
Confidence 589999999999874 45789999999999998865443
No 183
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=82.37 E-value=21 Score=30.04 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=28.9
Q ss_pred ecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHHHH
Q psy10683 205 ADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNWMN 247 (429)
Q Consensus 205 ad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW~~ 247 (429)
..--|.|||..++.++..+... ..++++|- |..-+..|..
T Consensus 8 s~kgG~GKTt~a~~la~~la~~---g~~vlliD~D~~~~~~~~~~ 49 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRS---GYNIAVVDTDPQMSLTNWSK 49 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHT
T ss_pred eCCCCccHHHHHHHHHHHHHHC---CCeEEEEECCCCCCHHHHHh
Confidence 4567899999999999888762 45677774 5566666653
No 184
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=82.09 E-value=0.56 Score=49.02 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=31.5
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
..++|||.+++.|+. .+.++|+++.+|.|||+..+..+
T Consensus 12 ~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i 49 (696)
T 2ykg_A 12 FKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLIC 49 (696)
T ss_dssp -CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHH
Confidence 589999999999975 36789999999999999766543
No 185
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.61 E-value=6 Score=37.82 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHH-HHHhcC-----CCeEe--ecCCCCCHHHHHHHHHHHHhh
Q psy10683 182 RDYQVRGLNWMI-SLYENG-----INGIL--ADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 182 r~~Q~~~v~~l~-~~~~~~-----~~~il--ad~~GlGKT~~~i~~~~~l~~ 225 (429)
|..+.+.+...+ .....+ ...++ ..+.|+|||..+-.++..+..
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 455666665444 333222 23566 789999999988877765543
No 186
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.46 E-value=0.7 Score=45.46 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=32.7
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEF 249 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~ 249 (429)
.|.+|.-++|+|||+.+-+++..+. .+++.|....++..|..+-
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~~------~~f~~v~~s~l~~~~vGes 259 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQTN------ATFLKLAAPQLVQMYIGEG 259 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCSSCSSHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHHhC------CCEEEEehhhhhhcccchH
Confidence 4567799999999999988876543 3677777777777665443
No 187
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=80.28 E-value=0.7 Score=46.25 Aligned_cols=37 Identities=22% Similarity=0.094 Sum_probs=31.1
Q ss_pred cccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 35 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
.|+|||.+++.++.. +.+++++..+|.|||+..+..+
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~ 149 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLA 149 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHH
Confidence 899999999998764 2678999999999999876543
No 188
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=80.22 E-value=0.61 Score=48.74 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=31.5
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
..|+|||.+++.++.. +.++++++.+|.|||+..+..+
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i 43 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIA 43 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHH
Confidence 4799999999999754 6679999999999998866543
No 189
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=79.87 E-value=2.1 Score=45.33 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=18.9
Q ss_pred eEeecCCCCCHHHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l 223 (429)
.+|..++|+|||..+-++...+
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5779999999999998887665
No 190
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=79.84 E-value=0.78 Score=39.70 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=31.4
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
..|+|||.+++.++. .+..+++....|.|||+..+..+
T Consensus 32 ~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~ 69 (216)
T 3b6e_A 32 LQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIA 69 (216)
T ss_dssp CCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHH
Confidence 489999999998764 35678999999999998876544
No 191
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.20 E-value=1.7 Score=46.27 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=28.3
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWM 246 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~ 246 (429)
.+.+|.-++|+|||+.+-+++... ..+++.|....++..|.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMWF 552 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTTC
T ss_pred ceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhcccc
Confidence 356889999999999887776432 23555555666666664
No 192
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=79.03 E-value=0.91 Score=45.56 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=31.6
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhcc
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLL 75 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~~ 75 (429)
..|+|||.+++.++. .+.++++++.+|.|||+..+..+
T Consensus 3 ~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~ 40 (555)
T 3tbk_A 3 LKPRNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLIC 40 (555)
T ss_dssp CCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHH
Confidence 379999999999874 45789999999999998865443
No 193
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=78.60 E-value=18 Score=33.47 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 182 RDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 182 r~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
|+.+.+.+. . +.. ...++.-+.|.|||..+-.++..+
T Consensus 18 R~~el~~L~---~-l~~-~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 18 REKEIEKLK---G-LRA-PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CHHHHHHHH---H-TCS-SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHH---H-hcC-CcEEEECCCCCCHHHHHHHHHHhc
Confidence 444544443 3 333 456778999999999887776543
No 194
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=76.41 E-value=6 Score=36.72 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=21.8
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
+.+.+|..++|+|||..+.+++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45668899999999999988887765
No 195
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=76.28 E-value=6.1 Score=37.77 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=33.0
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWM 246 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~ 246 (429)
+.-.+++.+.|+|||..++.++..... ..+++++|.......+|.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPVY 118 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHHH
Confidence 334577899999999999988876654 245788887766666653
No 196
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=75.58 E-value=11 Score=35.01 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=22.9
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
.+....|.|||..+..++..+... .+.++++.
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~ 139 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAA 139 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEc
Confidence 456679999999888887776542 45666664
No 197
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=74.04 E-value=19 Score=35.96 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=17.8
Q ss_pred CeEeecCCCCCHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~ 222 (429)
+.+|.-++|+|||..+-++...
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999988776653
No 198
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=73.77 E-value=5 Score=44.99 Aligned_cols=58 Identities=16% Similarity=0.106 Sum_probs=41.8
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcc---cCCCeEEEeccch
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRN---IAGPHIVIVPKST 241 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~---~~~~~LIV~P~~l 241 (429)
+..|.+-|..+|. ..+.+.++....|+|||.+.+.-+.++..... ....+|+|+++..
T Consensus 8 ~~~~t~eQ~~~i~------~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~ 68 (1232)
T 3u4q_A 8 DSTWTDDQWNAIV------STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNA 68 (1232)
T ss_dssp --CCCHHHHHHHH------CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHH
T ss_pred CCCCCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHH
Confidence 4578899999985 23556788899999999998876666654322 4457899988743
No 199
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=72.95 E-value=1.5 Score=44.06 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=29.8
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhc
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISL 74 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~ 74 (429)
..++|||.+++.++. .+..++++..+|.|||+..+..
T Consensus 6 ~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~ 42 (556)
T 4a2p_A 6 KKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILI 42 (556)
T ss_dssp --CCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHH
Confidence 479999999999874 3567999999999999886544
No 200
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=72.52 E-value=12 Score=35.53 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=29.2
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccch
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKST 241 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~l 241 (429)
+.-.+++.+.|+|||..++.++...... ..++++|.....
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s 102 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHA 102 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCC
Confidence 4446789999999999999988766542 356777775433
No 201
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.10 E-value=3.8 Score=43.55 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=26.9
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e 248 (429)
|.+|.-++|+|||..+=+++..+ ..+++.|....++..|..+
T Consensus 240 GILL~GPPGTGKT~LAraiA~el------g~~~~~v~~~~l~sk~~ge 281 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTT------TCEEEEEEHHHHHSSCTTH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh------CCeEEEEEhHHhhcccchH
Confidence 45779999999999887666322 2345555555555554433
No 202
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=71.84 E-value=45 Score=28.75 Aligned_cols=41 Identities=20% Similarity=0.043 Sum_probs=25.6
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhc---ccCCCeEEEecc
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYR---NIAGPHIVIVPK 239 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~---~~~~~~LIV~P~ 239 (429)
+.-..|.-+.|+|||..+..++....... .....++.|.-.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 33457788999999999888776432211 023456666533
No 203
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=71.66 E-value=8.7 Score=39.77 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc
Q psy10683 179 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK 239 (429)
Q Consensus 179 ~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~ 239 (429)
+.+-..|.+++..+..... ...+|-.+-|-|||..+-.+++.+. ...+|.+|.
T Consensus 174 ~~~T~dQ~~al~~~~~~~~--~~~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~ 226 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPP--GVAAVTAARGRGKSALAGQLISRIA------GRAIVTAPA 226 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCS--EEEEEEECTTSSHHHHHHHHHHHSS------SCEEEECSS
T ss_pred CCCCHHHHHHHHHHHHhhh--CeEEEecCCCCCHHHHHHHHHHHHH------hCcEEECCC
Confidence 4677889999987765432 2246667799999955444444332 234666777
No 204
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=71.44 E-value=14 Score=34.01 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=22.4
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
.+....|.|||..+..++..+.... ...++++.
T Consensus 109 ~lvG~~GsGKTTl~~~LA~~l~~~~--G~~V~lv~ 141 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAISMLEK--HKKIAFIT 141 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--CCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhc--CCEEEEEe
Confidence 4566789999998888877665322 23566654
No 205
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=70.90 E-value=5.1 Score=39.48 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHhcC----CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHH
Q psy10683 183 DYQVRGLNWMISLYENG----INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWM 246 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~----~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~ 246 (429)
+..++.+..++..+..+ .+.+|..++|+|||..+-+++..+.. ..+++.+....+...|.
T Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~----~~~~~~~~~~~~~~~~~ 106 (456)
T 2c9o_A 43 ENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS----KVPFCPMVGSEVYSTEI 106 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT----TSCEEEEEGGGGCCSSS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC----CceEEEEeHHHHHHHhh
Confidence 44555554444444433 35678999999999999888876532 24666666666554443
No 206
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=69.78 E-value=52 Score=29.41 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=29.7
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhc-------ccCCCeEEEeccchHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYR-------NIAGPHIVIVPKSTLLNW 245 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~-------~~~~~~LIV~P~~ll~qW 245 (429)
+.-.+|.-+.|+|||..+..++..+.... ...++++++.-.....+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~ 83 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAI 83 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHH
Confidence 44567889999999999888887554210 013466666655444443
No 207
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=69.70 E-value=2.3 Score=39.32 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=29.9
Q ss_pred cccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhhc
Q psy10683 35 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISL 74 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~~ 74 (429)
.|+|||.+++.++. ++..+++...+|.|||+..+..
T Consensus 16 ~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~ 51 (337)
T 2z0m_A 16 NFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIP 51 (337)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHH
Confidence 69999999999875 4567999999999999875543
No 208
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=69.26 E-value=5.9 Score=44.09 Aligned_cols=52 Identities=23% Similarity=0.194 Sum_probs=39.5
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcC
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCP 254 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~ 254 (429)
++....|+|||.+.+.-++++........++|+|||.....+-...+....+
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 4455589999999999888887655555789999999887775666655543
No 209
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=67.43 E-value=29 Score=32.11 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=28.1
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhh---cccCCCeEEEeccc
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHY---RNIAGPHIVIVPKS 240 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~---~~~~~~~LIV~P~~ 240 (429)
+.-.+++.+.|+|||..++.++...... .+..++++.|.-..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3345789999999999998888654321 11145677776554
No 210
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=67.41 E-value=13 Score=35.15 Aligned_cols=44 Identities=16% Similarity=0.031 Sum_probs=31.2
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNW 245 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW 245 (429)
+.-.++.-+.|+|||..++.++..... ..+++++|.-.....++
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE 104 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH
Confidence 334577899999999999988876654 24577877765544444
No 211
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=67.00 E-value=21 Score=32.80 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=22.8
Q ss_pred eecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 204 LADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 204 lad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
+....|.|||..+..++..+.. ..+.++++.
T Consensus 103 i~g~~G~GKTT~~~~la~~~~~---~~~~v~l~~ 133 (295)
T 1ls1_A 103 LVGLQGSGKTTTAAKLALYYKG---KGRRPLLVA 133 (295)
T ss_dssp EECCTTTTHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHH---cCCeEEEec
Confidence 4578999999998888877654 245677764
No 212
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=66.36 E-value=3.9 Score=38.16 Aligned_cols=37 Identities=27% Similarity=0.192 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 187 RGLNWMISLYENGINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 187 ~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
+.+..+......+.+.+|..++|+|||..+-++...+
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3444444455557788999999999999887776543
No 213
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=66.10 E-value=50 Score=30.58 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=23.3
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
.+....|.|||..+..++..+.. ..+.++++.
T Consensus 109 ~ivG~~G~GKTT~~~~LA~~l~~---~g~kVllid 140 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKMANYYAE---LGYKVLIAA 140 (320)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEe
Confidence 34567999999998888877654 246677764
No 214
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=65.22 E-value=2.4 Score=40.33 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=28.6
Q ss_pred cccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhh
Q psy10683 35 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI 72 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 72 (429)
.++|||.+++.++. .+.++++...+|.|||+..+
T Consensus 30 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~ 63 (391)
T 1xti_A 30 HPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFV 63 (391)
T ss_dssp SCCHHHHHHHHHHT----TTCCEEEECSSCSSHHHHHH
T ss_pred CCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHH
Confidence 59999999998864 35678999999999998754
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.31 E-value=12 Score=33.12 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=18.6
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
.+.+|.-++|+|||..+-++...+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 346789999999999887776543
No 216
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=62.35 E-value=19 Score=35.68 Aligned_cols=49 Identities=4% Similarity=-0.101 Sum_probs=33.7
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHH
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNE 248 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e 248 (429)
.+.-.+++..+|+|||..++.++...... ...+++++.-..-..+....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~s~~~l~~r 289 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAED 289 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSSCHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccCCHHHHHHH
Confidence 33346889999999999999988766542 14578888765444444443
No 217
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=62.29 E-value=7.2 Score=34.07 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=19.2
Q ss_pred CeEeecCCCCCHHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l 223 (429)
+.++..++|+|||..+.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35668999999999998888765
No 218
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=61.41 E-value=14 Score=32.29 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=32.5
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKK 251 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~ 251 (429)
-.+++.++|+|||..++.++..... ....+++++.-..-..+....+..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~--~~~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAE--EYGEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH--HHCCCEEEEESSSCHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH--hcCCCceeecccCCHHHHHHHHHH
Confidence 3588999999999999887754322 224577888755444554444443
No 219
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=60.60 E-value=15 Score=32.05 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=33.2
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFK 250 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~ 250 (429)
|.-.+++.+.|+|||..++.++..... ..++++++.-.....+..+.+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccCCHHHHHHHHH
Confidence 334578899999999998888766543 2457788875544455444443
No 220
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=59.12 E-value=49 Score=38.86 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=32.1
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN 244 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q 244 (429)
.+.+.++.-++|+|||..+++++..... ....++++.....+.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDP 1469 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccccCH
Confidence 4556788999999999999999875443 2456777776655443
No 221
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=58.01 E-value=16 Score=35.61 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=24.3
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
+++...|.|||.++..++.++... ...++++|.
T Consensus 104 ~ivG~~GvGKTT~a~~LA~~l~~~--~G~kVllvd 136 (433)
T 2xxa_A 104 LMAGLQGAGKTTSVGKLGKFLREK--HKKKVLVVS 136 (433)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHT--SCCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEEe
Confidence 345679999999999999887652 135667765
No 222
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=57.63 E-value=4.9 Score=38.29 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=28.3
Q ss_pred cccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhh
Q psy10683 35 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI 72 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 72 (429)
.++|||.+++.++.. +.++++...+|.|||+..+
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~ 76 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFV 76 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHH
Confidence 699999999998753 4668889999999997654
No 223
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=56.82 E-value=6.2 Score=33.60 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=28.6
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhh
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI 72 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 72 (429)
..++|||.+++.++. ++...++....|.|||+..+
T Consensus 22 ~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 22 TTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFA 56 (207)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHH
Confidence 379999999998864 35678888999999998744
No 224
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=56.81 E-value=3.9 Score=44.85 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHHHHhHhc----------Ccccchhhcccccchhhhhhc
Q psy10683 35 EMRDYQVRGLNWMISLYEN----------GINGILADEMGLGKTLQTISL 74 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~----------~~~~~l~~~~~~~k~~~~~~~ 74 (429)
.+||||.+++.++...... +.+|++....|.|||+..+.+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l 320 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKA 320 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHH
Confidence 6999999999998875432 357899999999999986443
No 225
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=56.58 E-value=5.6 Score=38.06 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=28.6
Q ss_pred cccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhh
Q psy10683 35 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI 72 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 72 (429)
.++|||.+++.++. ++..+++...+|.|||+..+
T Consensus 59 ~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~ 92 (410)
T 2j0s_A 59 KPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFS 92 (410)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHH
Confidence 59999999999874 45678999999999997754
No 226
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=56.32 E-value=5.3 Score=34.56 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=16.5
Q ss_pred eEeecCCCCCHHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~ 222 (429)
.++...+|+|||..++..+..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 356788999999998776544
No 227
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=56.24 E-value=61 Score=30.20 Aligned_cols=39 Identities=21% Similarity=0.049 Sum_probs=26.8
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhh---cccCCCeEEEeccc
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHY---RNIAGPHIVIVPKS 240 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~---~~~~~~~LIV~P~~ 240 (429)
.+++.+.|+|||..++.++...... .+..++++.|.-..
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 5789999999999998887653221 11345777776554
No 228
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=55.91 E-value=5.3 Score=37.84 Aligned_cols=34 Identities=26% Similarity=0.233 Sum_probs=28.7
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhh
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQT 71 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~ 71 (429)
..++|||.+++.++.. +...++...+|.|||+..
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHH
Confidence 3899999999998754 466889999999999874
No 229
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=55.88 E-value=23 Score=33.63 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=29.1
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN 244 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q 244 (429)
.++.-+.|+|||..++.++..+.. ..++++.|.......+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDP 103 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccch
Confidence 456889999999999888876654 2456778876654444
No 230
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=55.78 E-value=31 Score=40.52 Aligned_cols=45 Identities=16% Similarity=0.047 Sum_probs=35.3
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWM 246 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~ 246 (429)
+.-.+++.++|+|||..++.++..+.. ..+++++|.-.....||.
T Consensus 732 G~lilIaG~PG~GKTtLalqlA~~~a~---~g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECCCcHHHHH
Confidence 334578999999999999998877654 245789998877778875
No 231
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=55.08 E-value=6.7 Score=36.58 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=29.3
Q ss_pred cccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhh
Q psy10683 35 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS 73 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 73 (429)
.++|||.+++.++.. .+.+.++...+|.|||+..+.
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~ 63 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAI 63 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHH
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHH
Confidence 799999999988753 335788889999999987543
No 232
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=54.60 E-value=64 Score=31.29 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=23.9
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
.++...|.|||..+..++..+... .++++++.
T Consensus 102 ~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd 133 (425)
T 2ffh_A 102 FLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVA 133 (425)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCeEEEee
Confidence 346789999999998888777542 45677775
No 233
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=54.53 E-value=45 Score=31.14 Aligned_cols=42 Identities=10% Similarity=-0.058 Sum_probs=29.8
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN 244 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q 244 (429)
..+.-+.|+|||..++.++..... ....+.++.|....-+.+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhH
Confidence 356899999999999988876654 223456788876654443
No 234
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=54.49 E-value=15 Score=31.60 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=25.3
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEec
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P 238 (429)
|..-..|.|||.+++.++..+... ..+++++-|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~---G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAA---GYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHT---TCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEcc
Confidence 445678999999999999888763 446777755
No 235
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=53.71 E-value=6.3 Score=34.09 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=28.4
Q ss_pred cccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhh
Q psy10683 35 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS 73 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 73 (429)
.++|||.+++..+.. +..+++....|.|||+..+.
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~ 70 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVL 70 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhH
Confidence 599999999987643 46688899999999976554
No 236
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=52.67 E-value=47 Score=30.52 Aligned_cols=22 Identities=23% Similarity=0.012 Sum_probs=18.7
Q ss_pred CeEeecCCCCCHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~ 222 (429)
-.+++-+.|+|||..++.++..
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999888865
No 237
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=52.66 E-value=9.3 Score=38.18 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHH
Q psy10683 187 RGLNWMISLYENGINGILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 187 ~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~ 221 (429)
+.+..+......+.+.+|..++|+|||..+-++..
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHHHHHHH
Confidence 34444455555677889999999999988866654
No 238
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=52.05 E-value=15 Score=34.57 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=24.0
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc
Q psy10683 200 INGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK 239 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~ 239 (429)
.+.+|.-++|+|||..+-++...+ ..+++.+-..
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~ 85 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL------DVPFTMADAT 85 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechH
Confidence 456889999999999887776544 3455555433
No 239
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=51.81 E-value=8.4 Score=40.99 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=17.8
Q ss_pred CCCeEeecCCCCCHHHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~ 221 (429)
+.+.+|.-+.|+|||..+-++..
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34567899999999988766653
No 240
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=51.65 E-value=20 Score=31.89 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=19.6
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
..+.+|.-++|+|||..+-+++..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3456788999999999988777543
No 241
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=51.50 E-value=34 Score=39.42 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=31.6
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHH
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLN 244 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~q 244 (429)
.+...+++.++|+|||..++.++..... ..++++++.-.....+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~---~g~~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDP 774 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHH---cCCCeEEEeccchHHH
Confidence 3444678999999999999998876654 2457788765544444
No 242
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=51.48 E-value=6.6 Score=37.07 Aligned_cols=37 Identities=24% Similarity=0.175 Sum_probs=29.4
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhh
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI 72 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 72 (429)
..++|||.+.+.++... .+.+.++....|.|||+..+
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHH
Confidence 47999999999887432 33678999999999998654
No 243
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=50.55 E-value=20 Score=32.46 Aligned_cols=34 Identities=15% Similarity=-0.031 Sum_probs=23.2
Q ss_pred HHHHHHHHhcC---CC-eEeecCCCCCHHHHHHHHHHH
Q psy10683 189 LNWMISLYENG---IN-GILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 189 v~~l~~~~~~~---~~-~ilad~~GlGKT~~~i~~~~~ 222 (429)
..|+....... .+ .+|..++|+|||..+.+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34444444433 34 466899999999999888764
No 244
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=49.47 E-value=12 Score=34.18 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=19.5
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
..+|.-++|+|||..+-++...+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHHc
Confidence 357799999999999887776653
No 245
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=48.48 E-value=10 Score=33.13 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=29.2
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhh
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS 73 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 73 (429)
..++|||.+++.++. ++...++....|.|||+..+.
T Consensus 46 ~~~~~~Q~~~i~~~~----~~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 46 RLVTEIQKQTIGLAL----QGKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp CBCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEeCCCCcHHHHHHH
Confidence 379999999998874 456788889999999986543
No 246
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=47.48 E-value=11 Score=31.88 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=27.6
Q ss_pred cccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhh
Q psy10683 35 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI 72 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 72 (429)
.++|||.+.+..+. .+.+.++....|.|||+..+
T Consensus 25 ~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 25 KPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHH
T ss_pred CCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHH
Confidence 79999999998764 45678888889999997544
No 247
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=46.92 E-value=36 Score=31.40 Aligned_cols=40 Identities=20% Similarity=0.098 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHh----cCCCeEeecCCCCCHHHHHHHHHHH
Q psy10683 183 DYQVRGLNWMISLYE----NGINGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~----~~~~~ilad~~GlGKT~~~i~~~~~ 222 (429)
......+..++.... ...+.+|.-+.|+|||..+-++...
T Consensus 35 ~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 35 ESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 444444444444332 1235788999999999988777543
No 248
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=46.86 E-value=11 Score=41.88 Aligned_cols=80 Identities=10% Similarity=0.127 Sum_probs=51.1
Q ss_pred cCCCeEEEecc-chHHHHHHHHHhhcCCCceEEEeCChh--hHHHHHHhhcCCCCccEEEcchHHHHHHhhhhhccCceE
Q psy10683 229 IAGPHIVIVPK-STLLNWMNEFKKWCPTLRAICLIGDQD--ARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRY 305 (429)
Q Consensus 229 ~~~~~LIV~P~-~ll~qW~~e~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~dvvitty~~l~~~~~~l~~~~~~~ 305 (429)
..+.++|+|+. ..+....+.+.+.+|+.++..++|... .+...... +..+.++|+|+|- .+.. -+.--+.+.
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~-F~~g~~~VLVaT~-v~e~---GiDip~v~~ 885 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND-FHHQRFNVLVCTT-IIET---GIDIPTANT 885 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHH-HHTTSCCEEEESS-TTGG---GSCCTTEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHH-HHcCCCcEEEECC-ccee---eecccCCcE
Confidence 35778999987 556667788888889999999998753 34443333 3357789999884 1111 111113456
Q ss_pred EEecCccc
Q psy10683 306 LVIDEAHR 313 (429)
Q Consensus 306 vIiDEaH~ 313 (429)
||+.-+.+
T Consensus 886 VIi~~~~~ 893 (1151)
T 2eyq_A 886 IIIERADH 893 (1151)
T ss_dssp EEETTTTS
T ss_pred EEEeCCCC
Confidence 77765544
No 249
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=46.32 E-value=37 Score=30.97 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=19.3
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
.+.+|.-+.|+|||..+-++...+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999887776543
No 250
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=44.14 E-value=23 Score=31.30 Aligned_cols=43 Identities=14% Similarity=0.012 Sum_probs=28.6
Q ss_pred CeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE-e-ccchHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI-V-PKSTLLNWM 246 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV-~-P~~ll~qW~ 246 (429)
+.++....|.|||..++.++..+... ...++++ + |..-...|.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~---G~~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ---GVRVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCTTCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC---CCCEEEEEeCCCCChhHHH
Confidence 35678999999999999999887653 2244433 3 434444444
No 251
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=43.81 E-value=13 Score=32.01 Aligned_cols=34 Identities=26% Similarity=0.240 Sum_probs=27.9
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhh
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQT 71 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~ 71 (429)
..++|||.+.+..+. .+...++....|.|||+..
T Consensus 35 ~~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 35 EEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHH
T ss_pred CCCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHH
Confidence 379999999998764 4567889999999999773
No 252
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=43.66 E-value=11 Score=35.73 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=28.7
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhh
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI 72 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 72 (429)
..++|||.+++..+. .+...++....|.|||+..+
T Consensus 61 ~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 61 EKPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHH
T ss_pred CCCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHH
Confidence 379999999997764 35668999999999998753
No 253
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=43.28 E-value=26 Score=30.38 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=24.7
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
+....-|.|||..++.++..+... ..++|+|-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDR---GRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 445677999999999999888762 45778875
No 254
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=43.15 E-value=17 Score=31.91 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.4
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhh
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHY 226 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~ 226 (429)
|-+.++|.|||..+++++..+...
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~ 32 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQ 32 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHC
Confidence 447789999999999999988763
No 255
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=42.33 E-value=18 Score=32.24 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=20.6
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhh
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHY 226 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~ 226 (429)
|.+.++|.|||..+++++..+...
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~ 49 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNAC 49 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhC
Confidence 457889999999999999988763
No 256
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=42.23 E-value=27 Score=30.74 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=24.6
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
+...--|.|||..++.++..+... ..++|+|-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD 38 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQK---GKKTVVID 38 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 445678999999999999888752 45777774
No 257
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=41.86 E-value=27 Score=32.94 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=19.3
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
.+.+|..++|+|||..+-++...+
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999999999887776544
No 258
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=41.58 E-value=44 Score=30.15 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=27.0
Q ss_pred cCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHHH
Q psy10683 206 DEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNWM 246 (429)
Q Consensus 206 d~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW~ 246 (429)
.--|.|||..++.++..+... ..++|+|- |..-...|.
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~---G~rVlliD~D~q~~~~~~l 83 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKL---NLKVLMIDKDLQATLTKDL 83 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHT---TCCEEEEEECTTCHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhC---CCeEEEEeCCCCCCHHHHH
Confidence 478999999999999887652 45677763 555454454
No 259
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=41.52 E-value=15 Score=32.57 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=28.7
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhh
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS 73 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 73 (429)
..++|||.+.+..+. ++...++....|.|||+..+-
T Consensus 64 ~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~ 99 (249)
T 3ber_A 64 TKPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFAL 99 (249)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHH
Confidence 379999999998764 456788888899999987543
No 260
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=41.14 E-value=11 Score=32.53 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=28.2
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhh
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI 72 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 72 (429)
..++|||.+.+..+.. +...++....|.|||+..+
T Consensus 25 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHH
Confidence 3699999999987753 4678888899999998643
No 261
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=41.06 E-value=21 Score=31.80 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=22.3
Q ss_pred ecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE
Q psy10683 205 ADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI 236 (429)
Q Consensus 205 ad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV 236 (429)
..--|.|||..++.++..+... ..++|+|
T Consensus 7 s~KGGvGKTT~a~nLA~~la~~---G~~Vlli 35 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHAM---GKTIMVV 35 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHTT---TCCEEEE
T ss_pred ecCCCCcHHHHHHHHHHHHHHC---CCcEEEE
Confidence 3467999999999999888752 4577776
No 262
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=40.79 E-value=31 Score=30.43 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=24.9
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
+....-|.|||..++.++..+... ..++|+|-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~---g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQL---GHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhC---CCcEEEEE
Confidence 446678999999999999888763 45778774
No 263
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=40.51 E-value=23 Score=34.86 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=21.7
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
..+.+|..++|+|||..+-+++..+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 345688999999999999888876643
No 264
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=40.38 E-value=15 Score=31.95 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=27.2
Q ss_pred cccHHHHHHHHHHHHhHhcCcccchhhcccccchhhh
Q psy10683 35 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQT 71 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~ 71 (429)
.++|||.+.+..+. .+...++....|.|||+..
T Consensus 46 ~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 46 RPSPVQLKAIPLGR----CGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHH
Confidence 59999999998763 4567888889999999774
No 265
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=40.23 E-value=1.4e+02 Score=29.42 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 188 GLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 188 ~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
++..|.. +-+|+..++....|.|||..+..++.....
T Consensus 141 ~ID~L~p-i~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 141 VVDLLAP-YIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp HHHHHSC-EETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhh-hccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 4554433 234666788899999999988877765543
No 266
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=39.81 E-value=23 Score=32.91 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=22.4
Q ss_pred ecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE
Q psy10683 205 ADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI 236 (429)
Q Consensus 205 ad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV 236 (429)
+--=|.|||.+++.+...+... .+++|+|
T Consensus 54 aGKGGVGKTTtavNLA~aLA~~---GkkVllI 82 (314)
T 3fwy_A 54 YGKGGIGKSTTSSNLSAAFSIL---GKRVLQI 82 (314)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred ECCCccCHHHHHHHHHHHHHHC---CCeEEEE
Confidence 3456899999999999888763 4567777
No 267
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=39.62 E-value=31 Score=30.69 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=28.0
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccc-hHHHH
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKS-TLLNW 245 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~-ll~qW 245 (429)
+....-|.|||..++.++..+... ..++|+|- |.. .+..|
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~---G~~VlliD~D~~~~~l~~~ 65 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQ---GKKVGILDADFLGPSIPIL 65 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCCHHHHH
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCCCCHHHH
Confidence 445677999999999999888763 45778774 443 34444
No 268
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=39.21 E-value=23 Score=32.31 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=22.7
Q ss_pred cCCCCCHHHHHHHHHHHHhhhcccCCCeEEE
Q psy10683 206 DEMGLGKTLQTISLLGYMKHYRNIAGPHIVI 236 (429)
Q Consensus 206 d~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV 236 (429)
.--|.|||..++.++..+... ..++|+|
T Consensus 48 ~KGGvGKTT~a~nLA~~La~~---G~~Vlli 75 (307)
T 3end_A 48 GKGGIGKSTTSSNLSAAFSIL---GKRVLQI 75 (307)
T ss_dssp CSTTSSHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHC---CCeEEEE
Confidence 578999999999999888763 4567777
No 269
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=39.18 E-value=21 Score=31.95 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.5
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhh
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHY 226 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~ 226 (429)
|-+-++|.|||.++++++..+...
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~ 54 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQA 54 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHC
Confidence 447889999999999999988763
No 270
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=39.17 E-value=34 Score=31.34 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.5
Q ss_pred ecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 205 ADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 205 ad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
....|.|||.+++.++..+... ..++|+|-
T Consensus 111 s~kgG~GKTtva~nLA~~lA~~---G~rVLLID 140 (299)
T 3cio_A 111 GATPDSGKTFVSSTLAAVIAQS---DQKVLFID 140 (299)
T ss_dssp ESSSSSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHhC---CCcEEEEE
Confidence 4567999999999999888752 45778774
No 271
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=39.16 E-value=15 Score=32.11 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=26.7
Q ss_pred ecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHH
Q psy10683 205 ADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNW 245 (429)
Q Consensus 205 ad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW 245 (429)
..--|.|||..++.++..+... ..++|+|- |..-+..|
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~---g~~VlliD~D~~~~l~~~ 45 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASD---YDKIYAVDGDPDSCLGQT 45 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTT---CSCEEEEEECTTSCHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCcChHHH
Confidence 4467999999999999888753 36777773 54444444
No 272
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=39.14 E-value=19 Score=32.51 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=17.4
Q ss_pred CCeEeecCCCCCHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~ 221 (429)
.|.+|.-+.|+|||..+-+++.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3467799999999988766654
No 273
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=38.45 E-value=25 Score=31.81 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=22.6
Q ss_pred ecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE
Q psy10683 205 ADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI 236 (429)
Q Consensus 205 ad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV 236 (429)
..--|.|||..++.++..+... ..++|+|
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~---G~rVlli 36 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEM---GKKVMIV 36 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred eCCCcCcHHHHHHHHHHHHHHC---CCeEEEE
Confidence 3467999999999999888763 4567776
No 274
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=38.37 E-value=30 Score=34.50 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHH
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~ 222 (429)
+.+.+...+. .....+.+.++.-++|+|||...-+++..
T Consensus 245 ~~~~~l~~l~---~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 245 VPSGVLAYLW---LAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp SCHHHHHHHH---HHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCHHHHHHHH---HHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4444444444 34456777888999999999876665543
No 275
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=37.71 E-value=40 Score=34.17 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=29.6
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCC-CeEEEeccc
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAG-PHIVIVPKS 240 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~-~~LIV~P~~ 240 (429)
..+.+++-.+|+|||...-+++..+........ .+++|-|+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 567899999999999998888877765322222 345555775
No 276
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=37.14 E-value=36 Score=30.68 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=22.7
Q ss_pred ecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE
Q psy10683 205 ADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI 236 (429)
Q Consensus 205 ad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV 236 (429)
....|.|||.+++.++..+... ..++|+|
T Consensus 89 s~kgG~GKTt~a~nLA~~lA~~---G~rVLLI 117 (271)
T 3bfv_A 89 SEAPGAGKSTIAANLAVAYAQA---GYKTLIV 117 (271)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHHhC---CCeEEEE
Confidence 4567999999999999888752 4577777
No 277
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=36.83 E-value=70 Score=27.92 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=17.5
Q ss_pred CeEeecCCCCCHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~ 222 (429)
+.+|.-+.|+|||..+-+++..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999887766643
No 278
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=36.58 E-value=44 Score=31.36 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=29.2
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNW 245 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW 245 (429)
.+...--|.|||.++.+++..+... ..++|+|- |..-+..+
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD~D~~~~l~~~ 71 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEK---GLKVVIVSTDPAHSLRDI 71 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHS---SCCEEEEECCTTCHHHHH
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHC---CCeEEEEeCCCCCCHHHH
Confidence 3456788999999999999888763 55777775 54444443
No 279
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=36.38 E-value=96 Score=30.80 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=24.5
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEec
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVP 238 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P 238 (429)
.++-..|.|||..+..++.++... ..++++|..
T Consensus 105 ~ivG~~GvGKTTl~~kLA~~l~~~---G~kVllVd~ 137 (504)
T 2j37_W 105 MFVGLQGSGKTTTCSKLAYYYQRK---GWKTCLICA 137 (504)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEec
Confidence 456678999999999998877642 456777765
No 280
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=36.33 E-value=39 Score=30.72 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=24.6
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
+.....|.|||.+++.++..+... ..++|+|-
T Consensus 97 vts~kgG~GKTtva~nLA~~lA~~---G~rVLLID 128 (286)
T 3la6_A 97 MTGVSPSIGMTFVCANLAAVISQT---NKRVLLID 128 (286)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhC---CCCEEEEe
Confidence 445678999999999999888752 45777773
No 281
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=35.97 E-value=39 Score=31.30 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=28.9
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHH
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNW 245 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW 245 (429)
+...--|.|||.++.+++..+... ..++|+|- |..-+..+
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD~D~~~~l~~~ 59 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARS---GKKTLVISTDPAHSLSDS 59 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEECCSSCCHHHH
T ss_pred EEeCCCCchHHHHHHHHHHHHHHC---CCcEEEEeCCCCcCHHHH
Confidence 456788999999999999888763 55778775 44444443
No 282
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=35.93 E-value=33 Score=29.45 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=24.2
Q ss_pred CceEEEecCcccccC---chhHHHHHHHhccC----CcEEEEeCCcc
Q psy10683 302 NWRYLVIDEAHRIKN---EKSKLSEIVREFKT----TNRLLLTGTPL 341 (429)
Q Consensus 302 ~~~~vIiDEaH~~kn---~~s~~~~~~~~l~~----~~r~~lTgTP~ 341 (429)
.-.+|||||||.+-+ ......+.+..+.. ..-++|.|.|.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~ 133 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGP 133 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCG
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCH
Confidence 356899999999832 22222244555532 23578888883
No 283
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=35.79 E-value=30 Score=32.81 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=17.9
Q ss_pred HHHhcCCCe-Eee-cCCCCCHHHHHHH
Q psy10683 194 SLYENGING-ILA-DEMGLGKTLQTIS 218 (429)
Q Consensus 194 ~~~~~~~~~-ila-d~~GlGKT~~~i~ 218 (429)
..+..|.+| |+| -.+|+|||.++.+
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHHHHB
T ss_pred hhccCCceeEEEeeCCCCCCCCEEEec
Confidence 444556665 664 7899999998854
No 284
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=35.70 E-value=33 Score=33.16 Aligned_cols=26 Identities=15% Similarity=0.018 Sum_probs=19.1
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
..+.++...+|+|||...-.++..+.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~ 78 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGL 78 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788899999999997655554443
No 285
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=35.58 E-value=2.6e+02 Score=25.75 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=21.2
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
.+.-+.|.|||..+-.++..+.. ..+.++++.
T Consensus 133 ~lvG~nGaGKTTll~~Lag~l~~---~~g~V~l~g 164 (328)
T 3e70_C 133 MFVGFNGSGKTTTIAKLANWLKN---HGFSVVIAA 164 (328)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHh---cCCEEEEEe
Confidence 45788999999776666655443 345566553
No 286
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=35.42 E-value=20 Score=31.61 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhhh
Q psy10683 35 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS 73 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~~ 73 (429)
.++|||.+.+..+. .+...++....|.|||+..+.
T Consensus 45 ~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~ 79 (253)
T 1wrb_A 45 RPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLI 79 (253)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHH
Confidence 69999999998764 356688888899999976543
No 287
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=34.86 E-value=42 Score=29.06 Aligned_cols=33 Identities=6% Similarity=-0.042 Sum_probs=24.2
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
+...--|.|||..++.++..+... ...++|+|-
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~--~g~~VlliD 41 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQE--PDIHVLAVD 41 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTS--TTCCEEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhC--cCCCEEEEE
Confidence 445667999999999999887652 245677773
No 288
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=34.81 E-value=60 Score=31.38 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=28.1
Q ss_pred CCCChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 178 GGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 178 ~~~Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
+..+.+.+...+..+. ...+.-.++.-++|+|||...-+++..+.
T Consensus 148 ~Lg~~~~~~~~L~~l~--~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 148 SLGMTAHNHDNFRRLI--KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp GSCCCHHHHHHHHHHH--TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHH--HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3455566666665552 12222235789999999988777776553
No 289
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=34.39 E-value=35 Score=31.71 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=18.9
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
...+|.-+.|+|||..+-+++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 457889999999998877666544
No 290
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=33.59 E-value=57 Score=39.53 Aligned_cols=59 Identities=19% Similarity=0.117 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccch
Q psy10683 183 DYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKST 241 (429)
Q Consensus 183 ~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~l 241 (429)
+++..-+--+........+.+|..++|+|||...-.++..+....+......++-|+++
T Consensus 907 ~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~ 965 (2695)
T 4akg_A 907 EEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVL 965 (2695)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTS
T ss_pred HHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 44444444445555566778899999999998776666555432222223456678755
No 291
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=33.30 E-value=52 Score=32.81 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=28.2
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeE-EEeccc
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHI-VIVPKS 240 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~L-IV~P~~ 240 (429)
++.+.+++-.+|+|||...-+++..+........-.+ +|-|+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 4567899999999999988777766544222222234 444664
No 292
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=33.09 E-value=41 Score=27.89 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=18.9
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
++...+|.-.+|+|||.++-.+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34445778899999999887666443
No 293
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=32.87 E-value=33 Score=28.98 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=19.4
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
+...+|.-.+|+|||..+-.+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4456788999999999887776544
No 294
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=32.80 E-value=20 Score=31.40 Aligned_cols=34 Identities=26% Similarity=0.234 Sum_probs=27.5
Q ss_pred cccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhh
Q psy10683 35 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI 72 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 72 (429)
.++|||.+.+..+. .+...++....|.|||+..+
T Consensus 52 ~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 52 KPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHH
Confidence 59999999998764 45668888899999997643
No 295
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=32.44 E-value=67 Score=30.41 Aligned_cols=45 Identities=20% Similarity=0.149 Sum_probs=29.5
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWM 246 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~ 246 (429)
+.+.++.-.+|+|||..+-.++..+.. ....++|+-|..-...+.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~ 79 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYM---QGSRVIIIDPEREYKEMC 79 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEESSCCSHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHH---CCCEEEEEeCCcCHHHHH
Confidence 557788999999999887666655433 234566666664443333
No 296
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=32.27 E-value=78 Score=26.90 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=30.9
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHHHHH
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNWMNE 248 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW~~e 248 (429)
+...--|.|||..++.++..+... . ++|+|- |..-+..|...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~---g-~VlliD~D~q~~~~~~~~~ 48 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQ---G-ETLLIDGDPNRSATGWGKR 48 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTT---S-CEEEEEECTTCHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhc---C-CEEEEECCCCCCHHHHhcC
Confidence 345567999999999999888752 3 677763 76667777754
No 297
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=32.18 E-value=44 Score=32.65 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=19.4
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
.+.+|..++|+|||..+-+++..+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc
Confidence 467789999999999887777544
No 298
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=32.08 E-value=34 Score=28.27 Aligned_cols=24 Identities=33% Similarity=0.214 Sum_probs=18.6
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 200 INGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 200 ~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
...+|.-.+|+|||.++-.+...+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 345778889999999887776544
No 299
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=32.07 E-value=1.3e+02 Score=27.77 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q psy10683 207 EMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 207 ~~GlGKT~~~i~~~~~l~~ 225 (429)
-=|+|||=.++.++..+..
T Consensus 46 vGGTGKTP~vi~L~~~L~~ 64 (315)
T 4ehx_A 46 VGGSGKTSFVMYLADLLKD 64 (315)
T ss_dssp SSCCSHHHHHHHHHHHTTT
T ss_pred eCCCChHHHHHHHHHHHhh
Confidence 4689999999999987754
No 300
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=31.99 E-value=97 Score=30.72 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=35.8
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe----ccchHHHHHHHHHhhcCCCceEEEeCC
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV----PKSTLLNWMNEFKKWCPTLRAICLIGD 264 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~----P~~ll~qW~~e~~~~~~~~~~~~~~g~ 264 (429)
+|++..+..+.|.|||..++..+..... .+.+.|++ ...-+..+.+++...-.-.+.+++.+.
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 4556666667999999998776654321 23233333 335566677777664322344444433
No 301
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=31.79 E-value=90 Score=27.74 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=17.5
Q ss_pred CeEeecCCCCCHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~ 222 (429)
+.+|.-+.|+|||..+-+++..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4678999999999887766654
No 302
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=31.75 E-value=1.2e+02 Score=26.25 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=15.9
Q ss_pred eEeecCCCCCHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~ 221 (429)
.+|.-.+|+||+.++-.++.
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 35678999999999876654
No 303
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=31.69 E-value=44 Score=30.15 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=29.4
Q ss_pred eecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--c-cchHHHHHH
Q psy10683 204 LADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--P-KSTLLNWMN 247 (429)
Q Consensus 204 lad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P-~~ll~qW~~ 247 (429)
....-|.|||..++.++..+... ..++|+|- | ..-+..|..
T Consensus 10 ~s~KGGvGKTT~a~nLA~~La~~---G~~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 10 GNEKGGAGKSTIAVHLVTALLYG---GAKVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp CCSSSCTTHHHHHHHHHHHHHHT---TCCEEEEECCTTTCHHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCCCCCHHHHhC
Confidence 34567999999999999888763 45677773 5 555666654
No 304
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=31.47 E-value=19 Score=37.30 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=24.5
Q ss_pred cccHHHHHHHHHHHHhHhcCcc-cchhhcccccchhhhhhcc
Q psy10683 35 EMRDYQVRGLNWMISLYENGIN-GILADEMGLGKTLQTISLL 75 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~-~~l~~~~~~~k~~~~~~~~ 75 (429)
.+.+.|-+++.=+......+.. -.|..-.|-|||.....++
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~ 49 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVI 49 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHH
Confidence 5677888887755554444432 2344456778877665443
No 305
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=30.63 E-value=28 Score=33.26 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=27.6
Q ss_pred eecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE-eccchHHHHH
Q psy10683 204 LADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI-VPKSTLLNWM 246 (429)
Q Consensus 204 lad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV-~P~~ll~qW~ 246 (429)
+..--|.|||.++.+++..+... ..++|+| +|..-+.+|.
T Consensus 7 ~~gkGG~GKTt~a~~la~~la~~---g~~vllvd~~~~~l~~~~ 47 (374)
T 3igf_A 7 FLGKSGVARTKIAIAAAKLLASQ---GKRVLLAGLAEPVLPLLL 47 (374)
T ss_dssp EECSBHHHHHHHHHHHHHHHHHT---TCCEEEEECSCSHHHHHH
T ss_pred EeCCCCCcHHHHHHHHHHHHHHC---CCCeEEEeCCCCChHHhh
Confidence 34455899999999998877653 4456666 4666666654
No 306
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=30.40 E-value=3.6e+02 Score=25.60 Aligned_cols=39 Identities=18% Similarity=0.033 Sum_probs=24.8
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhc---ccCCCeEEEeccc
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYR---NIAGPHIVIVPKS 240 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~---~~~~~~LIV~P~~ 240 (429)
..|.-+.|+|||..+..++....... +..+++++|.-..
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 46789999999998876654332211 1345677776544
No 307
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=30.15 E-value=40 Score=32.16 Aligned_cols=34 Identities=29% Similarity=0.192 Sum_probs=24.2
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhc---ccCCCeEEE
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYR---NIAGPHIVI 236 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~---~~~~~~LIV 236 (429)
+...--|.|||.+++.++..+.... ....++|+|
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 3456788999999999998876410 235577777
No 308
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=29.93 E-value=73 Score=28.63 Aligned_cols=41 Identities=10% Similarity=-0.009 Sum_probs=27.6
Q ss_pred hcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEecc
Q psy10683 197 ENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK 239 (429)
Q Consensus 197 ~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~ 239 (429)
..|.-.+|+.+.|+|||..+..++..+... ...+++++...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e 73 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE 73 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc
Confidence 344456789999999999888777665442 12266666543
No 309
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=29.84 E-value=47 Score=29.40 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=28.2
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHHH
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNWM 246 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW~ 246 (429)
+...--|.|||..++.++..+. . ..++|+|- |..-+..|.
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la-~---g~~VlliD~D~~~~~~~~~ 73 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS-K---NNKVLLIDMDTQASITSYF 73 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT-T---TSCEEEEEECTTCHHHHHT
T ss_pred EEeCCCCchHHHHHHHHHHHHH-C---CCCEEEEECCCCCCHHHHh
Confidence 4456789999999999998876 2 46777773 554444443
No 310
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=29.75 E-value=34 Score=30.27 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=26.9
Q ss_pred ecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHH
Q psy10683 205 ADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNW 245 (429)
Q Consensus 205 ad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW 245 (429)
...-|.|||..++.++..+... ..++|+|- |..-+..|
T Consensus 13 s~kGGvGKTt~a~~LA~~la~~---g~~VlliD~D~~~~~~~~ 52 (257)
T 1wcv_1 13 NQKGGVGKTTTAINLAAYLARL---GKRVLLVDLDPQGNATSG 52 (257)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHH
T ss_pred eCCCCchHHHHHHHHHHHHHHC---CCCEEEEECCCCcCHHHH
Confidence 4567999999999999888763 45778773 54434444
No 311
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=29.70 E-value=54 Score=30.39 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=28.6
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNW 245 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW 245 (429)
.+..-.-|.|||.++.+++..+... ..++|+|- |..-+.+|
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~---G~rVllvD~D~~~~l~~~ 64 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKV---RSSVLLISTDPAHNLSDA 64 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTS---SSCEEEEECCTTCHHHHH
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHC---CCeEEEEECCCCcCHHHH
Confidence 3556788999999999998887752 45777774 44434443
No 312
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=29.54 E-value=46 Score=27.30 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=18.8
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
+...++.-.+|+|||..+-.+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3456788999999999887766543
No 313
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=29.34 E-value=28 Score=32.85 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=22.6
Q ss_pred ecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE
Q psy10683 205 ADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI 236 (429)
Q Consensus 205 ad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV 236 (429)
..--|.|||.+++.++..+.. ...++|+|
T Consensus 8 s~KGGvGKTT~a~nLA~~LA~---~G~rVLlI 36 (361)
T 3pg5_A 8 NNKGGVGKTTLSTNVAHYFAL---QGKRVLYV 36 (361)
T ss_dssp CSSCCHHHHHHHHHHHHHHHH---TTCCEEEE
T ss_pred cCCCCCcHHHHHHHHHHHHHh---CCCcEEEE
Confidence 345689999999999888865 35578887
No 314
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=29.21 E-value=42 Score=35.19 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=21.2
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHHh
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
..+.+|..++|+|||..+-+++..+.
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 34678899999999999988877653
No 315
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=28.34 E-value=48 Score=31.17 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=14.4
Q ss_pred cCCC-eEee-cCCCCCHHHHH
Q psy10683 198 NGIN-GILA-DEMGLGKTLQT 216 (429)
Q Consensus 198 ~~~~-~ila-d~~GlGKT~~~ 216 (429)
.|.+ +|+| -.+|+|||.++
T Consensus 92 ~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 92 EGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HTCCEEEEEESSTTSSHHHHH
T ss_pred CCCceEEEEecCCCCCCCeEE
Confidence 4554 5665 78999999987
No 316
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=28.26 E-value=78 Score=29.48 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=30.8
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHHHH
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNWMN 247 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW~~ 247 (429)
+...--|.|||.++++++..+.. ...++|+|- |..-+..|..
T Consensus 20 ~~sgkGGvGKTt~a~~lA~~la~---~g~~vllid~D~~~~l~~~l~ 63 (334)
T 3iqw_A 20 FVGGKGGVGKTTTSCSLAIQLAK---VRRSVLLLSTDPAHNLSDAFS 63 (334)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTT---SSSCEEEEECCSSCHHHHHHT
T ss_pred EEeCCCCccHHHHHHHHHHHHHh---CCCcEEEEECCCCCChhHHhc
Confidence 44667899999999999888765 245677774 6666666653
No 317
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=28.15 E-value=1.8e+02 Score=22.92 Aligned_cols=43 Identities=5% Similarity=0.011 Sum_probs=24.8
Q ss_pred hhccCceEEEecCcccccCchhHHHHHHHhccCCcEEEEeCCcc
Q psy10683 298 FKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPL 341 (429)
Q Consensus 298 l~~~~~~~vIiDEaH~~kn~~s~~~~~~~~l~~~~r~~lTgTP~ 341 (429)
+....+++||+|-.-- ........+.++.......+++|+..-
T Consensus 67 l~~~~~dlvilD~~l~-~~~g~~l~~~lr~~~~~~ii~~s~~~~ 109 (164)
T 3t8y_A 67 AIELKPDVITMDIEMP-NLNGIEALKLIMKKAPTRVIMVSSLTE 109 (164)
T ss_dssp HHHHCCSEEEECSSCS-SSCHHHHHHHHHHHSCCEEEEEESSCC
T ss_pred hccCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCceEEEEecCCc
Confidence 3445688999984322 122334455555554566777887653
No 318
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=28.08 E-value=79 Score=30.49 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchHHHHHHHHHhhcCCCceEEEeCC
Q psy10683 186 VRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGD 264 (429)
Q Consensus 186 ~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll~qW~~e~~~~~~~~~~~~~~g~ 264 (429)
..+|+.+.. ..+|+...+..+.|+|||..+..++..+... .....+|++ ++.+=.+|+..+...++..++.+.
T Consensus 162 iraID~~~p-i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~--~~~v~~I~~---lIGER~~Ev~~~~~~~~~~vV~at 234 (422)
T 3ice_A 162 ARVLDLASP-IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN--HPDCVLMVL---LIDERPEEVTEMQRLVKGEVVAST 234 (422)
T ss_dssp HHHHHHHSC-CBTTCEEEEECCSSSSHHHHHHHHHHHHHHH--CTTSEEEEE---EESSCHHHHHHHHTTCSSEEEEEC
T ss_pred ceeeeeeee-ecCCcEEEEecCCCCChhHHHHHHHHHHhhc--CCCeeEEEE---EecCChHHHHHHHHHhCeEEEEeC
Confidence 344443332 2456667788889999998886665555432 123334443 333333444444434444444433
No 319
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=28.07 E-value=1.5e+02 Score=29.34 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhc----ccCCCeEEEe----ccchHHHHHHHHHhhcCCCce
Q psy10683 187 RGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYR----NIAGPHIVIV----PKSTLLNWMNEFKKWCPTLRA 258 (429)
Q Consensus 187 ~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~----~~~~~~LIV~----P~~ll~qW~~e~~~~~~~~~~ 258 (429)
.++..|.. .-+|++..+..+.|+|||..++..|....... +..+-+.|++ ...-+.++.+++...-.-.+.
T Consensus 151 raID~l~P-igrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~t 229 (510)
T 2ck3_A 151 KAVDSLVP-IGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYT 229 (510)
T ss_dssp HHHHHHSC-CBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGE
T ss_pred eeeccccc-cccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccc
Confidence 34444332 23455566666699999999887765544310 1122333333 345566777777664322334
Q ss_pred EEEeCC
Q psy10683 259 ICLIGD 264 (429)
Q Consensus 259 ~~~~g~ 264 (429)
+++.+.
T Consensus 230 vvV~at 235 (510)
T 2ck3_A 230 IVVSAT 235 (510)
T ss_dssp EEEEEC
T ss_pred eEEEEC
Confidence 444443
No 320
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=28.07 E-value=45 Score=31.55 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=16.9
Q ss_pred HHHhcCCC-eEee-cCCCCCHHHHHHH
Q psy10683 194 SLYENGIN-GILA-DEMGLGKTLQTIS 218 (429)
Q Consensus 194 ~~~~~~~~-~ila-d~~GlGKT~~~i~ 218 (429)
...-.|.+ +|+| -.+|+|||.++.+
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyTM~G 124 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYTMMG 124 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHhCCCCEEEEEeCCCCCCccEEeCC
Confidence 33334555 5664 7899999998853
No 321
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=27.93 E-value=69 Score=30.27 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=17.5
Q ss_pred eEeecCCCCCHHHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l 223 (429)
.+|.-.+|+|||..+-.++..+
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6788899999999887666544
No 322
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=27.54 E-value=27 Score=32.90 Aligned_cols=36 Identities=25% Similarity=0.185 Sum_probs=28.5
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhh
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQT 71 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~ 71 (429)
..++|||.+.+..+... .+...++....|.|||+..
T Consensus 46 ~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHH
Confidence 37999999999776432 3467888889999999875
No 323
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=26.80 E-value=46 Score=26.83 Aligned_cols=21 Identities=19% Similarity=-0.135 Sum_probs=16.0
Q ss_pred eEeecCCCCCHHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~ 222 (429)
.++.-.+|+|||.++-.+...
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 356788999999888666544
No 324
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=26.69 E-value=38 Score=31.25 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=20.0
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
..+.+|..++|+|||..+-++...+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CceEEEECCCCccHHHHHHHHHHhC
Confidence 4457889999999999887777644
No 325
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=26.42 E-value=39 Score=28.55 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=19.1
Q ss_pred CCCeEeecCCCCCHHHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~ 221 (429)
+.+.++.-+.|.|||..+++++.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 44567789999999999998885
No 326
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=26.36 E-value=61 Score=30.56 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=15.7
Q ss_pred HhcCCC-eEee-cCCCCCHHHHHH
Q psy10683 196 YENGIN-GILA-DEMGLGKTLQTI 217 (429)
Q Consensus 196 ~~~~~~-~ila-d~~GlGKT~~~i 217 (429)
.-.|.+ +|+| -.+|+|||.++.
T Consensus 88 ~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 88 AFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HhCCceeEEEeeCCCCCCCceEEe
Confidence 334554 5664 799999999884
No 327
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=26.34 E-value=33 Score=29.71 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=17.8
Q ss_pred CeEeecCCCCCHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~ 221 (429)
+.++.-++|+|||-.++.++.
T Consensus 36 ~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999988874
No 328
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=26.18 E-value=39 Score=29.04 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=28.0
Q ss_pred CcccHHHHHHHHHHHHhHhcCcccchhhcccccchhhhh
Q psy10683 34 GEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI 72 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~~ 72 (429)
..++|||.+.+..+. ++...++....|.|||+-.+
T Consensus 41 ~~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 41 LKPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHH
Confidence 379999999997764 45677888889999997644
No 329
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=26.16 E-value=65 Score=30.65 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=17.0
Q ss_pred HHHHhcCCC-eEee-cCCCCCHHHHHHH
Q psy10683 193 ISLYENGIN-GILA-DEMGLGKTLQTIS 218 (429)
Q Consensus 193 ~~~~~~~~~-~ila-d~~GlGKT~~~i~ 218 (429)
+...-.|.+ +|+| -.+|+|||.++.+
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm~G 120 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTMVG 120 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHhCCceEEEEeecCCCCCcceeccc
Confidence 333334554 5664 7899999998753
No 330
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=26.03 E-value=47 Score=27.32 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=17.9
Q ss_pred eEeecCCCCCHHHHHHHHHHHHh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~ 224 (429)
.++.-.+|+|||.++-.+...+.
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999998877766553
No 331
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=25.99 E-value=92 Score=38.44 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEeccchH
Q psy10683 181 MRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTL 242 (429)
Q Consensus 181 Lr~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~P~~ll 242 (429)
..|.+..-+--+.+...-..|.++..++|+|||..-=.+...+....+.....-+|-|+++-
T Consensus 888 ~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKait 949 (3245)
T 3vkg_A 888 TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAIT 949 (3245)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTSC
T ss_pred cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCCc
Confidence 34455544444555555566678899999999986655655554432323345677898764
No 332
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=25.86 E-value=62 Score=31.58 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=15.4
Q ss_pred hcCCC-eEee-cCCCCCHHHHHH
Q psy10683 197 ENGIN-GILA-DEMGLGKTLQTI 217 (429)
Q Consensus 197 ~~~~~-~ila-d~~GlGKT~~~i 217 (429)
-.|.+ +|+| -.+|+|||.++.
T Consensus 133 l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 133 FEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHT
T ss_pred hcCCceEEEEeCCCCCCCCEEee
Confidence 34554 5665 689999999885
No 333
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=25.80 E-value=38 Score=32.20 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=23.1
Q ss_pred CceEEEecCcccccC---ch--hHHHHHHHhccCCcEEEEeCCc
Q psy10683 302 NWRYLVIDEAHRIKN---EK--SKLSEIVREFKTTNRLLLTGTP 340 (429)
Q Consensus 302 ~~~~vIiDEaH~~kn---~~--s~~~~~~~~l~~~~r~~lTgTP 340 (429)
...++|+||||.+.+ +. ..+.+.++..+.....++.+|-
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ 305 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQ 305 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEES
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcC
Confidence 467899999999964 22 1234455555554444444443
No 334
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=25.71 E-value=46 Score=29.49 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=17.1
Q ss_pred EeecCCCCCHHHHHHHHHHHH
Q psy10683 203 ILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l 223 (429)
++.-.+|+|||..+..++..+
T Consensus 5 ~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 5 LIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHhcC
Confidence 568899999999988877543
No 335
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=25.48 E-value=57 Score=30.83 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=16.0
Q ss_pred HhcCCC-eEee-cCCCCCHHHHHHH
Q psy10683 196 YENGIN-GILA-DEMGLGKTLQTIS 218 (429)
Q Consensus 196 ~~~~~~-~ila-d~~GlGKT~~~i~ 218 (429)
.-.|.+ +|+| -.+|+|||.++.+
T Consensus 84 ~l~G~n~tifAYGqTGSGKTyTM~G 108 (359)
T 1x88_A 84 VIMGYNCTIFAYGQTGTGKTFTMEG 108 (359)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHHTB
T ss_pred HhCCCceEEEEeCCCCCCCceEEec
Confidence 334554 5664 7899999998853
No 336
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=25.47 E-value=57 Score=30.40 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=17.2
Q ss_pred HHHHhcCCC-eEee-cCCCCCHHHHHHH
Q psy10683 193 ISLYENGIN-GILA-DEMGLGKTLQTIS 218 (429)
Q Consensus 193 ~~~~~~~~~-~ila-d~~GlGKT~~~i~ 218 (429)
+...-.|.+ +|+| -.+|+|||.++.+
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~G 97 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTMEG 97 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEecc
Confidence 333334555 5664 7899999999853
No 337
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=25.37 E-value=51 Score=26.65 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=17.5
Q ss_pred CeEeecCCCCCHHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l 223 (429)
+.+|.-.+|+|||.++-.+...+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 45778889999999886665443
No 338
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=25.24 E-value=43 Score=27.33 Aligned_cols=21 Identities=24% Similarity=0.077 Sum_probs=16.2
Q ss_pred eEeecCCCCCHHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~ 222 (429)
.++.-.+|+|||..+-.+...
T Consensus 6 i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 467888999999887666543
No 339
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=24.97 E-value=48 Score=27.35 Aligned_cols=22 Identities=23% Similarity=0.150 Sum_probs=17.0
Q ss_pred eEeecCCCCCHHHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l 223 (429)
.++.-.+|+|||.++-.+...+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999887666544
No 340
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=24.95 E-value=69 Score=30.09 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=27.8
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHH
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLN 244 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~q 244 (429)
+...--|.|||.++.+++..+.. ....+++|+|- |..-+..
T Consensus 22 v~sgKGGvGKTTvaanLA~~lA~-~~~G~rVLLvD~D~~~~l~~ 64 (354)
T 2woj_A 22 FVGGKGGVGKTTSSCSIAIQMAL-SQPNKQFLLISTDPAHNLSD 64 (354)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHH-HCTTSCEEEEECCSSCCHHH
T ss_pred EEeCCCCCcHHHHHHHHHHHHHH-hcCCCeEEEEECCCCCCHHH
Confidence 44667899999999999988762 02345778875 4344443
No 341
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=24.90 E-value=58 Score=30.90 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=15.6
Q ss_pred HhcCCC-eEee-cCCCCCHHHHHH
Q psy10683 196 YENGIN-GILA-DEMGLGKTLQTI 217 (429)
Q Consensus 196 ~~~~~~-~ila-d~~GlGKT~~~i 217 (429)
.-.|.+ +|+| -.+|+|||.++.
T Consensus 80 ~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 80 VLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HhCCCceEEEeecCCCCCCceEEe
Confidence 334554 5664 789999999874
No 342
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=24.63 E-value=55 Score=27.94 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=17.5
Q ss_pred CeEeecCCCCCHHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l 223 (429)
..+|.-.+|+|||.++-.+...+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 35678889999999887666543
No 343
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=24.62 E-value=1.1e+02 Score=28.75 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=30.4
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHHHH
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNWMN 247 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW~~ 247 (429)
++..--|.|||.++.+++..+.. .....++|+|- |..-+..|..
T Consensus 22 ~~~gkGGvGKTt~a~~lA~~la~-~~~g~~vllid~D~~~~l~~~~~ 67 (348)
T 3io3_A 22 FVGGKGGVGKTTTSSSVAVQLAL-AQPNEQFLLISTDPAHNLSDAFC 67 (348)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHH-HCTTSCEEEEECCSSCHHHHHHT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHH-hcCCCeEEEEECCCCCChHHHhc
Confidence 44567899999999999888762 02355777774 6666666653
No 344
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=24.44 E-value=51 Score=27.11 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=17.4
Q ss_pred EeecCCCCCHHHHHHHHHHHHh
Q psy10683 203 ILADEMGLGKTLQTISLLGYMK 224 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~ 224 (429)
++.-.+|+|||.++-.+...+.
T Consensus 5 ~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 5 IVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEECTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999998877776554
No 345
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=24.36 E-value=70 Score=32.27 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=29.0
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe--ccchHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV--PKSTLLNW 245 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~--P~~ll~qW 245 (429)
.++..-.|.|||.++++++..+... ..++|+|- |..-+..+
T Consensus 11 ~~~sgkGGvGKTT~a~~lA~~lA~~---G~rVLlvd~D~~~~l~~~ 53 (589)
T 1ihu_A 11 LFFTGKGGVGKTSISCATAIRLAEQ---GKRVLLVSTDPASNVGQV 53 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCTTCCHHHH
T ss_pred EEEeCCCcCHHHHHHHHHHHHHHHC---CCcEEEEECCCCcCHHHH
Confidence 3456678999999999999888763 45788875 44444443
No 346
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=24.36 E-value=83 Score=27.91 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=19.8
Q ss_pred CCCeEeecCCCCCHHHHHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~~l 223 (429)
+...+|.-.+|+|||..+-.+...+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 7778889999999998876665433
No 347
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=24.34 E-value=28 Score=35.98 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=24.2
Q ss_pred CcccHHHHHHHHHHHHhHhcCcc-cchhhcccccchhhhhhc
Q psy10683 34 GEMRDYQVRGLNWMISLYENGIN-GILADEMGLGKTLQTISL 74 (429)
Q Consensus 34 ~~l~~~q~~g~~~~~~~~~~~~~-~~l~~~~~~~k~~~~~~~ 74 (429)
.....+|..++.=+......+.. ..|..-.|-|||.-...+
T Consensus 11 ~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~ 52 (661)
T 2d7d_A 11 YQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNL 52 (661)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHH
Confidence 35667899888755555444432 234444577787665544
No 348
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=24.31 E-value=1e+02 Score=30.56 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe----ccchHHHHHHHHHhh
Q psy10683 187 RGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV----PKSTLLNWMNEFKKW 252 (429)
Q Consensus 187 ~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~----P~~ll~qW~~e~~~~ 252 (429)
.++..|.. .-+|++..+..+.|+|||..++..+..... .+...|++ ...-+.++.+++...
T Consensus 164 raID~l~P-igrGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~ 228 (515)
T 2r9v_A 164 KAIDSMIP-IGRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQY 228 (515)
T ss_dssp HHHHHHSC-EETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHT
T ss_pred cccccccc-cccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhC
Confidence 44444432 234566666666999999998766653321 23223333 235566666776653
No 349
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=24.19 E-value=75 Score=29.94 Aligned_cols=32 Identities=6% Similarity=-0.044 Sum_probs=24.8
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
+...--|.|||..++.++..+... ..++|+|-
T Consensus 148 v~s~KGGvGKTT~a~nLA~~La~~---g~rVlliD 179 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAIAHANM---GKKVFYLN 179 (373)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHH---TCCEEEEE
T ss_pred EECCCCCChHHHHHHHHHHHHHhC---CCCEEEEE
Confidence 445678999999999999888763 45777775
No 350
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=24.05 E-value=47 Score=32.10 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=15.8
Q ss_pred hcCCC-eEee-cCCCCCHHHHHHH
Q psy10683 197 ENGIN-GILA-DEMGLGKTLQTIS 218 (429)
Q Consensus 197 ~~~~~-~ila-d~~GlGKT~~~i~ 218 (429)
-.|.+ +|+| -.+|+|||.++.+
T Consensus 151 l~G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 151 FEGGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp HTTCEEEEEEEESTTSSHHHHHHC
T ss_pred hcCCceeEEeecCCCCCCCeEeec
Confidence 34554 5664 7899999999865
No 351
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=23.95 E-value=60 Score=30.68 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=15.7
Q ss_pred HhcCCC-eEee-cCCCCCHHHHHH
Q psy10683 196 YENGIN-GILA-DEMGLGKTLQTI 217 (429)
Q Consensus 196 ~~~~~~-~ila-d~~GlGKT~~~i 217 (429)
.-.|.+ +|+| -.+|+|||.++.
T Consensus 99 ~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 99 ALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HhCCCceEEEEECCCCCCCceEec
Confidence 334554 5664 789999999874
No 352
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=23.82 E-value=54 Score=27.26 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=16.4
Q ss_pred EeecCCCCCHHHHHHHHHHHH
Q psy10683 203 ILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l 223 (429)
++.-.+|+|||.++-.+...+
T Consensus 4 ~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCccCHHHHHHHHHHhc
Confidence 567789999999887776544
No 353
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=23.80 E-value=61 Score=30.85 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=16.7
Q ss_pred HHHhcCCC-eEee-cCCCCCHHHHHHH
Q psy10683 194 SLYENGIN-GILA-DEMGLGKTLQTIS 218 (429)
Q Consensus 194 ~~~~~~~~-~ila-d~~GlGKT~~~i~ 218 (429)
...-.|.+ +|+| -.+|+|||.++.+
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM~G 121 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTMEG 121 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeEec
Confidence 33334555 5664 7899999998853
No 354
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=23.51 E-value=64 Score=30.28 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=17.2
Q ss_pred HHHHHhcCCC-eEee-cCCCCCHHHHHH
Q psy10683 192 MISLYENGIN-GILA-DEMGLGKTLQTI 217 (429)
Q Consensus 192 l~~~~~~~~~-~ila-d~~GlGKT~~~i 217 (429)
++...-.|.+ +|+| -.+|+|||.++.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHC
T ss_pred HHHHHHhhcCeeEEEecccCCCceEeec
Confidence 3333344555 5664 789999999874
No 355
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=23.38 E-value=60 Score=30.64 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=17.2
Q ss_pred HHHHhcCCC-eEee-cCCCCCHHHHHHH
Q psy10683 193 ISLYENGIN-GILA-DEMGLGKTLQTIS 218 (429)
Q Consensus 193 ~~~~~~~~~-~ila-d~~GlGKT~~~i~ 218 (429)
+...-.|.+ +|+| -.+|+|||.++.+
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm~G 100 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTMMG 100 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHHTB
T ss_pred HHHHhCCCcceEEEECCCCCCcceEeec
Confidence 333334555 4654 7899999998853
No 356
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=23.31 E-value=60 Score=28.10 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=18.3
Q ss_pred CeEeecCCCCCHHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l 223 (429)
..++.-.+|+|||.++-.+...+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45778899999999987776554
No 357
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=23.20 E-value=2.5e+02 Score=27.74 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=21.0
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEE
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVI 236 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV 236 (429)
.|.-..|+|||..+-.++..+.. ..+.++|+
T Consensus 297 ~LVGpNGSGKTTLl~~LAgll~~---~~G~V~l~ 327 (503)
T 2yhs_A 297 LMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLA 327 (503)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHH---TTCCEEEE
T ss_pred EEECCCcccHHHHHHHHHHHhhh---cCCeEEEe
Confidence 45788999999877666655443 24566665
No 358
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.74 E-value=49 Score=34.61 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.4
Q ss_pred eEeecCCCCCHHHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l 223 (429)
.+|.-++|+|||..+-++...+
T Consensus 491 ~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 491 FLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5778999999999988777655
No 359
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=22.71 E-value=57 Score=30.72 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=14.8
Q ss_pred cCCC-eEee-cCCCCCHHHHHH
Q psy10683 198 NGIN-GILA-DEMGLGKTLQTI 217 (429)
Q Consensus 198 ~~~~-~ila-d~~GlGKT~~~i 217 (429)
.|.+ +|+| -.+|+|||.++.
T Consensus 87 ~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 87 EGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp TTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCceeEEeecCCCCCCCEEee
Confidence 4554 5664 789999999874
No 360
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=22.53 E-value=68 Score=30.39 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=15.2
Q ss_pred cCCC-eEee-cCCCCCHHHHHHH
Q psy10683 198 NGIN-GILA-DEMGLGKTLQTIS 218 (429)
Q Consensus 198 ~~~~-~ila-d~~GlGKT~~~i~ 218 (429)
.|.+ +|+| -.+|+|||.++.+
T Consensus 87 ~G~N~tifAYGqTGSGKTyTm~G 109 (366)
T 2zfi_A 87 EGYNVCIFAYGQTGAGKSYTMMG 109 (366)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTB
T ss_pred cCCeeEEEEeCCCCCCCceEeeC
Confidence 4554 5664 6899999998843
No 361
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=22.53 E-value=42 Score=29.16 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=26.6
Q ss_pred cccHHHHHHHHHHHHhHhcCcccchhhcccccchhhh
Q psy10683 35 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQT 71 (429)
Q Consensus 35 ~l~~~q~~g~~~~~~~~~~~~~~~l~~~~~~~k~~~~ 71 (429)
.++|||.+.+..+. .+...++....|.|||+..
T Consensus 51 ~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 51 MPTPIQMQAIPVML----HGRELLASAPTGSGKTLAF 83 (245)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHH
Confidence 69999999997653 4566788888999999764
No 362
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=22.43 E-value=47 Score=31.16 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=18.8
Q ss_pred eEeecCCCCCHHHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l 223 (429)
.+|.-.||+|||..++.++..+
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 5789999999999999888654
No 363
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=22.38 E-value=55 Score=30.88 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=15.6
Q ss_pred HhcCCC-eEee-cCCCCCHHHHHH
Q psy10683 196 YENGIN-GILA-DEMGLGKTLQTI 217 (429)
Q Consensus 196 ~~~~~~-~ila-d~~GlGKT~~~i 217 (429)
.-.|.+ +|+| -.+|+|||.++.
T Consensus 101 ~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 101 FLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp HTTTCCEEEEEECCTTSSHHHHHT
T ss_pred HhCCCceEEEEeCCCCCCceeeec
Confidence 334554 5664 799999999874
No 364
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=22.21 E-value=59 Score=26.81 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=18.7
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhh
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKH 225 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~ 225 (429)
.++.-.+|+|||.++-.+...+..
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 456788999999988777766543
No 365
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=22.05 E-value=1.8e+02 Score=28.76 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe----ccchHHHHHHHHHhhcCCCceEEEe
Q psy10683 187 RGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV----PKSTLLNWMNEFKKWCPTLRAICLI 262 (429)
Q Consensus 187 ~~v~~l~~~~~~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~----P~~ll~qW~~e~~~~~~~~~~~~~~ 262 (429)
.+++.|... -+|++..+..+-|.|||..++..+... ...+-..|++ ..+-+.+..+++...-.-.+.+++.
T Consensus 151 kaID~l~Pi-grGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~ 225 (513)
T 3oaa_A 151 KAVDSMIPI-GRGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVV 225 (513)
T ss_dssp HHHHHHSCC-BTTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEE
T ss_pred eeecccccc-ccCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEE
Confidence 445444332 345555555669999999887665432 1223323333 3355666777776643223344444
Q ss_pred CC
Q psy10683 263 GD 264 (429)
Q Consensus 263 g~ 264 (429)
+.
T Consensus 226 at 227 (513)
T 3oaa_A 226 AT 227 (513)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 366
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=22.03 E-value=63 Score=26.74 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=16.5
Q ss_pred CeEeecCCCCCHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~ 221 (429)
..+|.-.+|+|||.++-.+..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 457788999999988766554
No 367
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=21.97 E-value=1.1e+02 Score=30.48 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=29.3
Q ss_pred cCCCeEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe----ccchHHHHHHHHHh
Q psy10683 198 NGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV----PKSTLLNWMNEFKK 251 (429)
Q Consensus 198 ~~~~~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~----P~~ll~qW~~e~~~ 251 (429)
+|++..+..+.|.|||..++..+.... ..+-..|++ ...-+.++.+++..
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~ 215 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQE 215 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGG
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHh
Confidence 455666666799999999877665322 133333333 23445556666554
No 368
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=21.90 E-value=50 Score=26.45 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=13.8
Q ss_pred EeecCCCCCHHHHHHHH
Q psy10683 203 ILADEMGLGKTLQTISL 219 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~ 219 (429)
++.-.+|+|||.++-.+
T Consensus 5 ~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 5 LITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEECCTTSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 56788999999877655
No 369
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=21.89 E-value=63 Score=26.48 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=16.2
Q ss_pred eEeecCCCCCHHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~ 222 (429)
.+|.-.+|+|||.++-.+...
T Consensus 7 I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467788999999888666543
No 370
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=21.87 E-value=59 Score=30.61 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=15.2
Q ss_pred hcCCC-eEee-cCCCCCHHHHHH
Q psy10683 197 ENGIN-GILA-DEMGLGKTLQTI 217 (429)
Q Consensus 197 ~~~~~-~ila-d~~GlGKT~~~i 217 (429)
-.|.+ +|+| -.+|+|||.++.
T Consensus 74 l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 74 IQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HTTCCEEEEEEESTTSSHHHHHT
T ss_pred HcCCccceeeecCCCCCCCeEEe
Confidence 34554 5554 789999999885
No 371
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=21.86 E-value=56 Score=34.48 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=32.7
Q ss_pred CCcccHHHHHHHHHHHHhHhcC--cccchhhcccccchhhhhh
Q psy10683 33 GGEMRDYQVRGLNWMISLYENG--INGILADEMGLGKTLQTIS 73 (429)
Q Consensus 33 ~~~l~~~q~~g~~~~~~~~~~~--~~~~l~~~~~~~k~~~~~~ 73 (429)
+..|+|+|.+.+..+......+ ...++....|.|||+..+.
T Consensus 366 pf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall 408 (780)
T 1gm5_A 366 PFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQL 408 (780)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHH
Confidence 4579999999999887765544 3788888999999987643
No 372
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=21.51 E-value=62 Score=26.54 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=16.2
Q ss_pred eEeecCCCCCHHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~ 222 (429)
.+|.-.+|+|||.++-.+...
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456788999999988666543
No 373
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=21.50 E-value=66 Score=26.20 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=17.6
Q ss_pred CeEeecCCCCCHHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l 223 (429)
..++.-.+|+|||..+-.+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 35678899999999887666543
No 374
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=21.44 E-value=74 Score=27.14 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=17.8
Q ss_pred CeEeecCCCCCHHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l 223 (429)
..++.-.+|+|||.++-.+...+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999887766543
No 375
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=21.13 E-value=86 Score=29.00 Aligned_cols=23 Identities=22% Similarity=0.604 Sum_probs=19.4
Q ss_pred CCCeEeecCCCCCHHHHHHHHHH
Q psy10683 199 GINGILADEMGLGKTLQTISLLG 221 (429)
Q Consensus 199 ~~~~ilad~~GlGKT~~~i~~~~ 221 (429)
|.+.++..+.|.|||..+++++.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHh
Confidence 55667899999999999988875
No 376
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=21.11 E-value=41 Score=32.15 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=16.6
Q ss_pred EeecCCCCCHHHHHHHHHHHHhhhc---ccCCCeEEE
Q psy10683 203 ILADEMGLGKTLQTISLLGYMKHYR---NIAGPHIVI 236 (429)
Q Consensus 203 ilad~~GlGKT~~~i~~~~~l~~~~---~~~~~~LIV 236 (429)
+...--|.|||.++..++..+.... ....++|+|
T Consensus 116 v~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 116 VVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp ECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred EEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 3456789999999999998876310 235567777
No 377
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=20.94 E-value=74 Score=30.88 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=24.4
Q ss_pred eEeecCCCCCHHHHHHHHHHHHhhhcccCCCeEEEe
Q psy10683 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIV 237 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l~~~~~~~~~~LIV~ 237 (429)
.+++...|.|||..+..++..+... ..++++|.
T Consensus 102 I~ivG~~GvGKTTla~~La~~l~~~---G~kVllv~ 134 (432)
T 2v3c_C 102 ILLVGIQGSGKTTTAAKLARYIQKR---GLKPALIA 134 (432)
T ss_dssp EEEECCSSSSTTHHHHHHHHHHHHH---HCCEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 3456789999999999988877642 34566665
No 378
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=20.87 E-value=68 Score=26.31 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=16.0
Q ss_pred eEeecCCCCCHHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~ 222 (429)
.++.-.+|+|||.++-.+...
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 456788999999988666543
No 379
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=20.85 E-value=66 Score=26.93 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=17.5
Q ss_pred CeEeecCCCCCHHHHHHHHHHHH
Q psy10683 201 NGILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 201 ~~ilad~~GlGKT~~~i~~~~~l 223 (429)
-.+|.-.+|+|||..+-.+...+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35778999999998876665543
No 380
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=20.53 E-value=72 Score=25.69 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=16.5
Q ss_pred eEeecCCCCCHHHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGYM 223 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~l 223 (429)
.++.-.+|+|||.++-.+...+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4567789999998886666543
No 381
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=20.35 E-value=2.6e+02 Score=27.54 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=39.0
Q ss_pred cccCCCeEEEeccch-HHHHHHHHHhhcC-CCceEEEeCCh--hhHHHHHHhhcCCCCccEEEcch
Q psy10683 227 RNIAGPHIVIVPKST-LLNWMNEFKKWCP-TLRAICLIGDQ--DARNAMIRDVMMPGEWDVCITSY 288 (429)
Q Consensus 227 ~~~~~~~LIV~P~~l-l~qW~~e~~~~~~-~~~~~~~~g~~--~~~~~~~~~~~~~~~~dvvitty 288 (429)
....+++||.|+.-- .......+...++ +..+..++|.. ..|....... ..+..+|+|+|-
T Consensus 336 ~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f-~~g~~~vLvaT~ 400 (563)
T 3i5x_A 336 RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRF-KKDESGILVCTD 400 (563)
T ss_dssp TTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHH-HHCSSEEEEECG
T ss_pred cCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHH-hcCCCCEEEEcc
Confidence 345678999999843 4445556666555 67888888864 3444433333 346778888884
No 382
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=20.26 E-value=62 Score=30.97 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=15.8
Q ss_pred HhcCCC-eEee-cCCCCCHHHHHHH
Q psy10683 196 YENGIN-GILA-DEMGLGKTLQTIS 218 (429)
Q Consensus 196 ~~~~~~-~ila-d~~GlGKT~~~i~ 218 (429)
.-.|.+ +|+| -.+|+|||.++.+
T Consensus 130 ~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 130 IFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp HHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred HhcCCceEEEEecCCCCCCCeEecc
Confidence 334554 5664 7899999999865
No 383
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=20.24 E-value=71 Score=26.16 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=16.4
Q ss_pred eEeecCCCCCHHHHHHHHHHH
Q psy10683 202 GILADEMGLGKTLQTISLLGY 222 (429)
Q Consensus 202 ~ilad~~GlGKT~~~i~~~~~ 222 (429)
.+|.-.+|+|||.++-.+...
T Consensus 5 I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467788999999988666543
Done!