RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10683
(429 letters)
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 163 bits (413), Expect = 1e-48
Identities = 84/230 (36%), Positives = 131/230 (56%), Gaps = 11/230 (4%)
Query: 173 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGP 232
P+ IK +R YQ++G +WM + + G LAD+MGLGKTLQTI++ K + P
Sbjct: 6 PYNIKA-NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENEL-TP 63
Query: 233 HIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI 292
+VI P S L NW E K+ P LR D+ ++D+ +T+Y + +
Sbjct: 64 SLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKLE--------DYDIILTTYAVLL 115
Query: 293 RERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALL 352
R+ K+ W+Y+VIDEA IKN ++K+ + V+E K+ R+ LTGTP++N + +LW+++
Sbjct: 116 RDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIM 174
Query: 353 NFLLPDIFSSSDDFDSWFNTEEFMGDHSIIERLHSVLKPFLLRRLKSEVE 402
FL P + S +F S F T GD+ E L +++ PF+LRR K +
Sbjct: 175 TFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKA 224
Score = 71.2 bits (173), Expect = 9e-15
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 28 PFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTIS 73
P+ IK +R YQ++G +WM + + G LAD+MGLGKTLQTI+
Sbjct: 6 PYNIKA-NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA 50
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 148 bits (373), Expect = 5e-42
Identities = 64/246 (26%), Positives = 108/246 (43%), Gaps = 27/246 (10%)
Query: 178 GGEMRDYQVRGLNWMISLY-----ENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGP 232
+R +Q G+ ++ EN I+ADEMGLGKTLQ I+L+ + P
Sbjct: 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKP 112
Query: 233 H----IVIVPKSTLLNWMNEFKKWCPTLRAICLI--GDQDARNAMIRDVMMPGEW----D 282
IV+ P S + NW NE KW I G +D ++ + + +
Sbjct: 113 EIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTP 172
Query: 283 VCITSYEMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 342
+ I SYE V K ++ DE HR+KN ++ + R+L++GTP+Q
Sbjct: 173 ILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQ 232
Query: 343 NNLHELWALLNFLLPDIFSSSDDFDSWFNT------------EEFMGDHSIIERLHSVLK 390
N+L E ++L++F+ I ++ +F F ++ ++ L S++
Sbjct: 233 NDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVN 292
Query: 391 PFLLRR 396
L+RR
Sbjct: 293 RCLIRR 298
Score = 60.9 bits (146), Expect = 6e-11
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 33 GGEMRDYQVRGLNWMISLY-----ENGINGILADEMGLGKTLQTISLL 75
+R +Q G+ ++ EN I+ADEMGLGKTLQ I+L+
Sbjct: 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLI 100
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 76.5 bits (187), Expect = 8e-17
Identities = 26/172 (15%), Positives = 45/172 (26%), Gaps = 25/172 (14%)
Query: 169 FENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRN 228
+P++ +RDYQ + L + G + G GKT
Sbjct: 59 PIPTPYFDAEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHV-----AMAAINEL 109
Query: 229 IAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSY 288
IV+ + W + + + T
Sbjct: 110 STPTLIVVPTLALAEQWKERLGIFGEEYVGEF------------SGRIKELKPLTVSTYD 157
Query: 289 EMCIRERGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTP 340
+ + + L+ DE H + E +I + RL LT T
Sbjct: 158 SAYVNAEKLGN--RFMLLIFDEVHHLPAE--SYVQIAQMSIAPFRLGLTATF 205
Score = 32.9 bits (74), Expect = 0.039
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 24 FENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQ 70
+P++ +RDYQ + L + G + G GKT
Sbjct: 59 PIPTPYFDAEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHV 101
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 49.8 bits (117), Expect = 1e-07
Identities = 29/165 (17%), Positives = 50/165 (30%), Gaps = 11/165 (6%)
Query: 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK 239
+ R YQ N ++ GLGKTL I+++ G +++ P
Sbjct: 9 QPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTL--IAMMIAEYRLTKYGGKVLMLAPT 61
Query: 240 STLLNW-MNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVF 298
L+ F++ + + + V G
Sbjct: 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRI 121
Query: 299 KKFNWRYLVIDEAHRIKNEKSK---LSEIVREFKTTNRLLLTGTP 340
+ +V DEAHR + E R+ K + LT +P
Sbjct: 122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASP 166
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 49.5 bits (117), Expect = 3e-07
Identities = 29/202 (14%), Positives = 66/202 (32%), Gaps = 19/202 (9%)
Query: 162 EGKTIVSFENSPFYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLG 221
+ +S K E YQ + + +N G++L L
Sbjct: 95 DFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILN----LPTSAGRSLIQALLAR 150
Query: 222 YMKHYRNIAGPHIVIVPKSTLLN-WMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGE 280
Y ++IVP + L ++F + A+ +D +
Sbjct: 151 YYLENYEGKI--LIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGG----ASKDDKYKND 204
Query: 281 WDVCITSYEMCIRE-RGVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTN-RLLLTG 338
V + +++ +++ + F +F ++ DE H + +S I+ + L+G
Sbjct: 205 APVVVGTWQTVVKQPKEWFSQFG--MMMNDECHLATGK--SISSIISGLNNCMFKFGLSG 260
Query: 339 TPLQNNLHELWALLNFLLPDIF 360
+ + + + +IF
Sbjct: 261 SLRDGKANIMQ--YVGMFGEIF 280
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 44.3 bits (103), Expect = 3e-06
Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 15/149 (10%)
Query: 195 LYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCP 254
+ + G+ +L G GKT + + + R +V T + + +
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR----LRTLVLAPTRVVLSEMKEAFHG 58
Query: 255 TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRI 314
E + + R + NW +++DEAH +
Sbjct: 59 LDVKF--------HTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL 110
Query: 315 KNEKSKLSEIVREFKTTNR---LLLTGTP 340
N +L+T TP
Sbjct: 111 DPASIAARGWAAHRARANESATILMTATP 139
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 37.7 bits (86), Expect = 0.001
Identities = 34/192 (17%), Positives = 67/192 (34%), Gaps = 19/192 (9%)
Query: 180 EMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPK 239
+ R Q ++ ++ +G + ++ G GK+L Y + G +V+ P
Sbjct: 25 QFRPGQEEIIDTVL----SGRDCLVVMPTGGGKSL------CYQIPALLLNGLTVVVSPL 74
Query: 240 STLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCI--RERGV 297
+L+ + + A + + G+ + + E +
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEH 134
Query: 298 FKKFNWRYLVIDEAHRI-------KNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWA 350
+N L +DEAH I + E + L ++ + F T + LT T ++
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 351 LLNFLLPDIFSS 362
LL P I S
Sbjct: 195 LLGLNDPLIQIS 206
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 38.0 bits (87), Expect = 0.001
Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 9/144 (6%)
Query: 174 FYIKGGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPH 233
F GE R Q W + + G+GKT + L + +
Sbjct: 37 FRKCVGEPRAIQKM---WAKRILR-KESFAATAPTGVGKT--SFGLAMSLFLALKGKRCY 90
Query: 234 IVIVPKSTLLNWMNEFKKWCPTLR---AICLIGDQDARNAMIRDVMMPGEWDVCITSYEM 290
++ ++ +K+ + ++ M + I
Sbjct: 91 VIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTT 150
Query: 291 CIRERGVFKKFNWRYLVIDEAHRI 314
+ + ++ ++ +D+ I
Sbjct: 151 QFLSKHYRELGHFDFIFVDDVDAI 174
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 35.6 bits (81), Expect = 0.003
Identities = 17/143 (11%), Positives = 34/143 (23%), Gaps = 21/143 (14%)
Query: 202 GILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCPTLRAICL 261
L G GK+ + + + + P + + K
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATL-----GFGAYMSKAHGV------ 59
Query: 262 IGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAH-RIKNEKSK 320
+ V S G + ++ DE H
Sbjct: 60 ------DPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILG 113
Query: 321 LSEIVREFKTTNR---LLLTGTP 340
+ ++ + +T +L T TP
Sbjct: 114 IGTVLDQAETAGARLVVLATATP 136
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 33.0 bits (74), Expect = 0.058
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 399 SEV-EKRLKPKKELKVYVGLSKMQREWYTKV 428
S++ K L K E V L+ +Q+E Y
Sbjct: 2 SDILSKYLPVKIEQVVCCNLTPLQKELYKLF 32
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 33.2 bits (75), Expect = 0.066
Identities = 16/152 (10%), Positives = 47/152 (30%), Gaps = 20/152 (13%)
Query: 253 CPTLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRER---GVFKKFNWRYLVID 309
+R + I + + C+ + +R+ V K + +++
Sbjct: 101 ALAVRTMGCIRVDKITEYLCEPLRK------CLKDEDPYVRKTAAVCVAKLHDINAQMVE 154
Query: 310 EAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDIFSSSDDFDSW 369
+ + + + +++ L+ + L L + + ++ ++ W
Sbjct: 155 DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEW 214
Query: 370 -----------FNTEEFMGDHSIIERLHSVLK 390
+N ++ SI ER+ L
Sbjct: 215 GQIFILDCLSNYNPKDDREAQSICERVTPRLS 246
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 30.3 bits (67), Expect = 0.44
Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 12/120 (10%)
Query: 195 LYENGINGILADEMGLGKTLQTISLLGYMKHYRNIAGPHIVIVPKSTLLNWMNEFKKWCP 254
++ I+ G GKT + L ++ +++ P + M E + P
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKR--YLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLP 62
Query: 255 TLRAICLIGDQDARNAMIRDVMMPGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRI 314
+ IR E + +R + N+ +++DEAH
Sbjct: 63 ----------IRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFT 112
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 29.1 bits (64), Expect = 0.84
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 403 KRLKPKKELKVYVGLSKMQREWYTKV 428
K L +++V L++ +R Y K
Sbjct: 1 KHLAKYTIKRIFVPLAEDERVEYEKR 26
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 28.5 bits (62), Expect = 1.5
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 408 KKELKVYVGLSKMQREWYTKV 428
K E VY L+ Q Y
Sbjct: 1 KIETNVYCNLTPEQAAMYKAE 21
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 26.6 bits (58), Expect = 4.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 294 ERGVFKKFNWRYLVIDEAHRI 314
RG N +Y ++DEA +
Sbjct: 137 NRGTLNLKNVKYFILDEADEM 157
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein
L2 {Thermus thermophilus [TaxId: 274]}
Length = 125
Score = 26.0 bits (57), Expect = 5.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 123 KGRPKKSLTKEKKNVDPSDHRHRMT 147
K P+KSL K K +++ R+T
Sbjct: 25 KTEPEKSLVKPLKKTGGRNNQGRIT 49
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 26.3 bits (56), Expect = 5.4
Identities = 11/97 (11%), Positives = 24/97 (24%), Gaps = 7/97 (7%)
Query: 223 MKHYRNIAGPHIVIVP-----KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMM 277
++H + G + KS+ LN + K T + Q + D
Sbjct: 8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLART--SKTPGRTQLINLFEVADGKR 65
Query: 278 PGEWDVCITSYEMCIRERGVFKKFNWRYLVIDEAHRI 314
+ + +R + +
Sbjct: 66 LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGL 102
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 25.9 bits (55), Expect = 9.2
Identities = 9/88 (10%), Positives = 18/88 (20%), Gaps = 5/88 (5%)
Query: 223 MKHYRNIAGPHIVIVP-----KSTLLNWMNEFKKWCPTLRAICLIGDQDARNAMIRDVMM 277
+ Y P I + KS+ +N + K T + +
Sbjct: 15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFV 74
Query: 278 PGEWDVCITSYEMCIRERGVFKKFNWRY 305
+ G +
Sbjct: 75 DVPGYGFAKVSKSEREAWGRMIETYITT 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.407
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,664,125
Number of extensions: 81583
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 29
Length of query: 429
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 341
Effective length of database: 1,199,356
Effective search space: 408980396
Effective search space used: 408980396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)