Query psy10684
Match_columns 288
No_of_seqs 300 out of 2885
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 15:59:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0385|consensus 100.0 9.7E-46 2.1E-50 340.5 15.6 199 2-200 415-623 (971)
2 KOG0384|consensus 100.0 5.7E-42 1.2E-46 328.4 8.9 202 1-202 618-837 (1373)
3 PLN03142 Probable chromatin-re 100.0 1.2E-36 2.6E-41 298.9 14.0 188 2-191 417-611 (1033)
4 KOG0387|consensus 100.0 2.8E-34 6E-39 266.1 13.4 173 20-193 491-672 (923)
5 KOG1002|consensus 100.0 3.6E-34 7.8E-39 253.6 12.1 145 54-199 616-769 (791)
6 KOG0389|consensus 100.0 1.8E-33 3.8E-38 260.5 13.7 172 22-194 679-903 (941)
7 KOG0392|consensus 100.0 1.1E-32 2.3E-37 264.3 14.0 177 18-195 1261-1470(1549)
8 KOG0386|consensus 100.0 9.7E-32 2.1E-36 254.2 12.9 202 14-215 665-877 (1157)
9 KOG0390|consensus 100.0 1.3E-29 2.8E-34 239.7 12.6 175 21-195 526-723 (776)
10 KOG4439|consensus 100.0 6.1E-29 1.3E-33 228.0 13.8 186 10-195 639-874 (901)
11 KOG0391|consensus 99.9 9.8E-28 2.1E-32 228.9 13.3 137 52-189 1254-1397(1958)
12 COG0553 HepA Superfamily II DN 99.9 4.3E-26 9.3E-31 227.7 15.3 178 17-195 637-838 (866)
13 KOG0388|consensus 99.9 2.2E-26 4.9E-31 211.3 10.2 141 53-195 1023-1170(1185)
14 KOG0385|consensus 99.9 7E-25 1.5E-29 203.2 8.9 178 75-283 396-581 (971)
15 KOG0388|consensus 99.9 8.5E-25 1.8E-29 201.0 5.7 142 131-283 992-1136(1185)
16 PRK04914 ATP-dependent helicas 99.9 1.6E-23 3.5E-28 205.8 10.3 131 55-188 476-614 (956)
17 KOG1001|consensus 99.9 2.4E-24 5.1E-29 204.7 2.9 140 57-197 521-668 (674)
18 KOG0387|consensus 99.9 7.3E-23 1.6E-27 190.6 9.1 179 75-284 457-641 (923)
19 KOG0384|consensus 99.9 1.1E-23 2.4E-28 203.3 3.5 108 180-287 687-805 (1373)
20 KOG1015|consensus 99.8 4.6E-21 9.9E-26 181.0 11.3 135 55-189 1123-1287(1567)
21 KOG1000|consensus 99.8 4.2E-21 9.1E-26 170.9 10.2 144 56-200 470-624 (689)
22 KOG0389|consensus 99.8 1.6E-21 3.5E-26 181.6 3.2 104 179-283 764-870 (941)
23 KOG1002|consensus 99.8 2.9E-21 6.2E-26 172.0 4.6 93 190-283 636-731 (791)
24 KOG0390|consensus 99.8 4.5E-21 9.8E-26 182.1 4.7 73 212-284 618-690 (776)
25 KOG0333|consensus 99.8 1.2E-19 2.7E-24 162.6 9.1 146 28-178 470-618 (673)
26 KOG0331|consensus 99.8 3.2E-19 7E-24 163.1 9.5 119 56-177 322-441 (519)
27 PLN03142 Probable chromatin-re 99.8 6.3E-20 1.4E-24 181.3 3.4 102 182-283 477-581 (1033)
28 KOG0392|consensus 99.8 6.9E-20 1.5E-24 177.0 2.7 97 190-287 1338-1448(1549)
29 cd00079 HELICc Helicase superf 99.8 3.5E-18 7.7E-23 131.7 9.6 117 58-177 12-128 (131)
30 KOG0391|consensus 99.7 4.9E-19 1.1E-23 170.1 3.8 104 179-283 1263-1369(1958)
31 KOG0330|consensus 99.7 3.2E-18 7E-23 148.7 7.8 117 56-177 284-400 (476)
32 KOG0328|consensus 99.7 4.4E-18 9.6E-23 142.3 7.8 118 56-178 250-367 (400)
33 COG0513 SrmB Superfamily II DN 99.7 1E-17 2.2E-22 157.5 10.3 115 58-177 259-373 (513)
34 PTZ00110 helicase; Provisional 99.7 8.5E-18 1.8E-22 159.3 7.2 120 55-177 358-477 (545)
35 PRK04837 ATP-dependent RNA hel 99.7 5.4E-17 1.2E-21 149.9 9.2 116 57-177 240-355 (423)
36 KOG4439|consensus 99.7 1.9E-17 4E-22 153.0 4.6 98 188-285 742-842 (901)
37 KOG0386|consensus 99.7 2.5E-17 5.4E-22 157.2 4.7 105 179-283 713-820 (1157)
38 PRK11192 ATP-dependent RNA hel 99.7 3.1E-16 6.7E-21 145.4 11.2 115 58-177 231-345 (434)
39 PF00271 Helicase_C: Helicase 99.7 4.6E-17 1E-21 114.5 4.3 78 92-172 1-78 (78)
40 PRK01297 ATP-dependent RNA hel 99.7 6.8E-16 1.5E-20 144.6 12.0 117 56-177 319-435 (475)
41 PRK11776 ATP-dependent RNA hel 99.7 5.5E-16 1.2E-20 144.7 11.2 117 56-177 226-342 (460)
42 PRK04537 ATP-dependent RNA hel 99.6 1E-15 2.2E-20 145.9 12.3 116 57-177 242-357 (572)
43 PLN00206 DEAD-box ATP-dependen 99.6 3.2E-16 7E-21 148.0 8.2 119 56-177 349-468 (518)
44 KOG0336|consensus 99.6 5.9E-17 1.3E-21 141.8 2.5 119 55-177 447-565 (629)
45 KOG0340|consensus 99.6 7.2E-16 1.6E-20 132.8 8.4 118 56-176 235-353 (442)
46 KOG0383|consensus 99.6 2.1E-16 4.6E-21 149.2 5.3 136 2-140 559-696 (696)
47 PRK13766 Hef nuclease; Provisi 99.6 1.3E-15 2.9E-20 150.7 11.1 116 55-173 344-469 (773)
48 KOG1016|consensus 99.6 3.3E-16 7.1E-21 146.0 5.9 121 56-177 701-840 (1387)
49 PRK10590 ATP-dependent RNA hel 99.6 1.1E-15 2.5E-20 142.3 9.6 114 59-177 232-345 (456)
50 KOG0335|consensus 99.6 2.5E-16 5.4E-21 142.2 4.6 153 54-209 310-469 (482)
51 KOG0332|consensus 99.6 1.5E-15 3.3E-20 131.5 9.0 118 56-178 314-437 (477)
52 COG0553 HepA Superfamily II DN 99.6 1.6E-16 3.5E-21 159.0 3.4 97 186-283 703-804 (866)
53 PRK11634 ATP-dependent RNA hel 99.6 2.8E-15 6.1E-20 143.8 10.8 117 56-177 229-345 (629)
54 KOG0326|consensus 99.6 1.2E-15 2.6E-20 129.8 4.0 120 53-177 303-422 (459)
55 KOG0341|consensus 99.6 2.1E-15 4.6E-20 131.3 5.5 118 54-177 404-521 (610)
56 KOG0342|consensus 99.6 4.2E-15 9.1E-20 132.9 7.2 116 57-176 314-429 (543)
57 KOG1000|consensus 99.6 6.3E-16 1.4E-20 138.2 1.7 100 188-288 488-598 (689)
58 smart00490 HELICc helicase sup 99.6 6.9E-15 1.5E-19 103.7 6.5 81 89-172 2-82 (82)
59 KOG0345|consensus 99.6 1.2E-14 2.6E-19 129.3 9.2 117 56-177 239-357 (567)
60 TIGR00614 recQ_fam ATP-depende 99.6 1.4E-14 3E-19 135.5 9.9 114 60-177 213-326 (470)
61 KOG1001|consensus 99.5 1.2E-16 2.5E-21 152.5 -6.0 89 194-283 541-632 (674)
62 COG1111 MPH1 ERCC4-like helica 99.5 4.6E-14 9.9E-19 127.1 10.4 118 56-177 346-474 (542)
63 PRK11057 ATP-dependent DNA hel 99.5 4.4E-14 9.4E-19 135.8 10.8 113 59-176 223-335 (607)
64 PTZ00424 helicase 45; Provisio 99.5 7.7E-14 1.7E-18 128.0 11.6 114 59-177 254-367 (401)
65 TIGR00603 rad25 DNA repair hel 99.5 6.5E-14 1.4E-18 134.4 9.8 114 56-176 478-592 (732)
66 KOG1015|consensus 99.5 1.1E-14 2.4E-19 138.4 4.0 72 212-284 1187-1260(1567)
67 KOG4284|consensus 99.5 5.3E-14 1.1E-18 129.5 8.0 147 26-177 215-372 (980)
68 PRK12898 secA preprotein trans 99.5 1.7E-13 3.6E-18 130.2 11.6 117 56-177 455-579 (656)
69 TIGR03817 DECH_helic helicase/ 99.5 2.3E-13 4.9E-18 133.2 11.6 111 64-177 261-379 (742)
70 TIGR01389 recQ ATP-dependent D 99.5 1.5E-13 3.2E-18 132.2 10.2 116 56-176 208-323 (591)
71 KOG0348|consensus 99.5 3.5E-13 7.7E-18 121.8 11.0 119 56-177 403-547 (708)
72 PRK09200 preprotein translocas 99.5 2.2E-13 4.9E-18 131.9 10.5 118 55-177 409-534 (790)
73 KOG0298|consensus 99.5 8.5E-14 1.8E-18 136.2 7.4 141 56-203 1201-1350(1394)
74 PLN03137 ATP-dependent DNA hel 99.5 1.6E-13 3.5E-18 135.6 9.1 101 74-177 680-780 (1195)
75 TIGR00963 secA preprotein tran 99.4 7.3E-13 1.6E-17 126.7 11.0 147 26-177 355-510 (745)
76 PHA02558 uvsW UvsW helicase; P 99.4 8.1E-13 1.7E-17 124.5 10.8 119 56-176 326-444 (501)
77 KOG0339|consensus 99.4 1.8E-13 3.8E-18 123.1 5.9 132 56-191 451-582 (731)
78 KOG0338|consensus 99.4 3.3E-13 7.2E-18 121.4 7.5 112 59-175 413-524 (691)
79 KOG0327|consensus 99.4 2.9E-13 6.2E-18 118.0 6.1 118 57-181 250-367 (397)
80 TIGR03714 secA2 accessory Sec 99.4 2.3E-12 4.9E-17 124.0 10.4 116 56-177 406-530 (762)
81 KOG0343|consensus 99.3 6.2E-12 1.3E-16 114.3 10.6 117 55-176 296-414 (758)
82 KOG0347|consensus 99.3 7.1E-13 1.5E-17 120.2 4.3 98 75-175 464-561 (731)
83 PRK12906 secA preprotein trans 99.3 5.4E-12 1.2E-16 121.8 10.3 146 27-177 391-546 (796)
84 KOG0344|consensus 99.3 5E-12 1.1E-16 115.7 9.6 117 56-177 371-488 (593)
85 KOG0346|consensus 99.3 4.3E-12 9.2E-17 112.5 8.3 149 25-177 215-403 (569)
86 KOG0350|consensus 99.3 2.8E-12 6E-17 115.3 6.8 114 59-177 416-533 (620)
87 PRK13767 ATP-dependent helicas 99.3 8.4E-12 1.8E-16 124.4 10.2 109 61-172 271-385 (876)
88 PRK05298 excinuclease ABC subu 99.3 1.5E-11 3.3E-16 118.9 11.1 116 57-176 429-549 (652)
89 PRK12900 secA preprotein trans 99.3 2.2E-11 4.7E-16 118.8 11.0 117 56-177 580-704 (1025)
90 TIGR01587 cas3_core CRISPR-ass 99.3 1.8E-11 3.9E-16 110.7 10.0 111 58-175 207-323 (358)
91 TIGR00631 uvrb excinuclease AB 99.3 1.7E-11 3.6E-16 118.1 10.1 117 56-176 424-545 (655)
92 KOG0334|consensus 99.3 5.5E-12 1.2E-16 122.1 6.1 117 56-176 596-712 (997)
93 TIGR02621 cas3_GSU0051 CRISPR- 99.2 3.9E-11 8.4E-16 116.8 10.7 112 59-175 256-381 (844)
94 PF00271 Helicase_C: Helicase 99.2 7.8E-12 1.7E-16 87.6 3.8 71 211-284 5-75 (78)
95 TIGR00580 mfd transcription-re 99.2 5.4E-11 1.2E-15 118.2 9.9 104 71-177 657-763 (926)
96 KOG0349|consensus 99.2 8.8E-11 1.9E-15 104.2 9.0 100 74-176 505-607 (725)
97 PRK10917 ATP-dependent DNA hel 99.2 2.2E-10 4.7E-15 111.7 11.2 118 56-176 453-581 (681)
98 PRK04914 ATP-dependent helicas 99.2 6.8E-11 1.5E-15 117.3 7.7 90 192-283 493-587 (956)
99 PRK10689 transcription-repair 99.2 1.5E-10 3.3E-15 117.4 10.3 108 65-176 801-911 (1147)
100 TIGR00643 recG ATP-dependent D 99.1 3.8E-10 8.2E-15 109.2 11.4 116 59-177 433-559 (630)
101 PRK09751 putative ATP-dependen 99.1 2.3E-10 5E-15 117.4 9.7 97 72-171 242-371 (1490)
102 COG0514 RecQ Superfamily II DN 99.1 6.5E-10 1.4E-14 104.2 11.1 100 74-176 230-329 (590)
103 PHA02653 RNA helicase NPH-II; 99.1 3.7E-10 8E-15 108.8 9.1 100 73-177 394-507 (675)
104 KOG0337|consensus 99.1 2.3E-10 4.9E-15 101.2 6.3 146 28-177 213-361 (529)
105 KOG1016|consensus 99.1 1E-10 2.3E-15 109.9 3.8 71 213-284 761-832 (1387)
106 TIGR01970 DEAH_box_HrpB ATP-de 99.0 1.2E-09 2.5E-14 107.7 10.7 100 73-176 208-328 (819)
107 PRK12904 preprotein translocas 99.0 1.7E-09 3.8E-14 105.1 11.0 147 26-177 380-566 (830)
108 KOG0354|consensus 99.0 1.9E-09 4.1E-14 102.7 10.8 116 56-175 393-521 (746)
109 PRK02362 ski2-like helicase; P 99.0 8.2E-10 1.8E-14 108.9 8.7 106 66-174 235-385 (737)
110 PRK13104 secA preprotein trans 99.0 2.1E-09 4.5E-14 104.8 10.7 146 27-177 395-580 (896)
111 smart00490 HELICc helicase sup 99.0 4.7E-10 1E-14 78.7 4.4 69 213-284 11-79 (82)
112 PRK11664 ATP-dependent RNA hel 99.0 2.5E-09 5.4E-14 105.5 10.3 101 73-177 211-332 (812)
113 PRK13107 preprotein translocas 99.0 3E-09 6.4E-14 103.6 10.4 117 56-177 431-584 (908)
114 COG1061 SSL2 DNA or RNA helica 99.0 4.9E-09 1.1E-13 97.3 10.8 110 57-171 267-376 (442)
115 PRK01172 ski2-like helicase; P 98.9 5E-09 1.1E-13 102.5 9.3 108 63-174 225-366 (674)
116 TIGR03158 cas3_cyano CRISPR-as 98.9 1.2E-08 2.5E-13 92.3 9.6 100 58-169 251-357 (357)
117 PRK09401 reverse gyrase; Revie 98.8 3.2E-08 7E-13 101.0 12.0 105 58-172 315-432 (1176)
118 PRK00254 ski2-like helicase; P 98.8 1.9E-08 4.1E-13 99.1 8.5 108 63-173 227-375 (720)
119 PRK11131 ATP-dependent RNA hel 98.7 3.2E-08 6.8E-13 100.5 8.5 98 73-176 285-403 (1294)
120 PRK09694 helicase Cas3; Provis 98.7 7.5E-08 1.6E-12 95.4 10.8 109 63-174 549-665 (878)
121 TIGR01967 DEAH_box_HrpA ATP-de 98.7 8.6E-08 1.9E-12 97.6 9.8 112 59-176 263-396 (1283)
122 cd00079 HELICc Helicase superf 98.6 2.3E-08 5E-13 76.5 3.8 68 213-283 52-119 (131)
123 COG1201 Lhr Lhr-like helicases 98.6 1.5E-07 3.3E-12 91.7 9.5 109 60-171 239-348 (814)
124 KOG1123|consensus 98.6 7.8E-07 1.7E-11 80.9 12.1 113 56-175 525-638 (776)
125 COG1202 Superfamily II helicas 98.6 5E-08 1.1E-12 89.8 4.0 113 56-172 416-539 (830)
126 TIGR01054 rgy reverse gyrase. 98.6 5.8E-07 1.3E-11 92.1 11.9 90 59-157 314-410 (1171)
127 PF11496 HDA2-3: Class II hist 98.5 4.9E-07 1.1E-11 79.2 8.5 145 18-162 53-222 (297)
128 KOG0351|consensus 98.5 1.9E-07 4.1E-12 92.6 6.6 102 72-176 483-584 (941)
129 PRK14701 reverse gyrase; Provi 98.4 1E-06 2.2E-11 92.5 10.1 103 61-174 320-446 (1638)
130 PRK11448 hsdR type I restricti 98.4 2E-06 4.4E-11 87.6 10.9 96 74-173 698-802 (1123)
131 TIGR00595 priA primosomal prot 98.3 2.3E-06 5.1E-11 80.7 8.9 88 87-177 271-374 (505)
132 PRK12903 secA preprotein trans 98.3 3.5E-06 7.7E-11 82.0 10.0 145 27-177 377-532 (925)
133 PRK10917 ATP-dependent DNA hel 98.2 4.9E-05 1.1E-09 74.5 16.5 220 56-283 292-573 (681)
134 PRK12326 preprotein translocas 98.2 8.7E-06 1.9E-10 78.2 10.5 148 26-178 377-541 (764)
135 KOG0953|consensus 98.2 5.8E-06 1.2E-10 76.2 8.2 99 72-174 356-464 (700)
136 TIGR00603 rad25 DNA repair hel 98.2 1.3E-06 2.8E-11 84.7 3.7 67 216-284 518-585 (732)
137 TIGR00614 recQ_fam ATP-depende 98.2 5.3E-05 1.2E-09 71.2 14.1 220 56-283 36-317 (470)
138 TIGR00643 recG ATP-dependent D 98.1 7.3E-05 1.6E-09 72.7 15.0 222 56-283 266-550 (630)
139 KOG0352|consensus 98.1 2.6E-06 5.7E-11 76.1 4.3 95 77-174 258-352 (641)
140 PRK05580 primosome assembly pr 98.1 1.7E-05 3.7E-10 77.6 10.0 87 87-176 439-541 (679)
141 PRK11192 ATP-dependent RNA hel 98.1 0.0001 2.2E-09 68.5 14.7 69 212-283 268-336 (434)
142 PTZ00110 helicase; Provisional 98.1 7.1E-05 1.5E-09 71.5 13.6 69 212-283 400-468 (545)
143 COG0556 UvrB Helicase subunit 98.1 4.9E-05 1.1E-09 70.0 11.6 110 60-172 432-546 (663)
144 PRK11776 ATP-dependent RNA hel 98.0 0.0001 2.2E-09 69.1 13.6 69 212-283 265-333 (460)
145 TIGR01389 recQ ATP-dependent D 98.0 0.00019 4.1E-09 69.5 15.4 221 55-283 37-315 (591)
146 PRK04537 ATP-dependent RNA hel 98.0 0.00022 4.8E-09 68.5 15.6 69 212-283 280-348 (572)
147 TIGR00580 mfd transcription-re 98.0 0.00016 3.6E-09 72.7 14.8 220 56-283 482-754 (926)
148 KOG0383|consensus 98.0 4E-06 8.8E-11 80.3 3.1 94 161-255 596-696 (696)
149 PRK12899 secA preprotein trans 98.0 6.1E-05 1.3E-09 74.4 10.9 146 27-177 519-674 (970)
150 COG1205 Distinct helicase fami 97.9 4.2E-05 9.2E-10 76.2 9.3 115 58-175 290-413 (851)
151 PLN00206 DEAD-box ATP-dependen 97.9 0.00026 5.6E-09 67.4 14.3 69 212-283 391-459 (518)
152 PRK10689 transcription-repair 97.9 0.00023 5.1E-09 73.2 13.6 219 56-283 631-903 (1147)
153 COG1200 RecG RecG-like helicas 97.8 0.00011 2.3E-09 70.0 9.8 117 56-175 455-582 (677)
154 PRK13766 Hef nuclease; Provisi 97.8 1.7E-05 3.6E-10 79.1 4.2 69 212-283 388-464 (773)
155 PRK12901 secA preprotein trans 97.8 8.3E-05 1.8E-09 73.9 8.5 117 56-177 610-734 (1112)
156 PRK13103 secA preprotein trans 97.8 9.5E-05 2E-09 72.9 8.8 146 27-177 400-584 (913)
157 PRK11634 ATP-dependent RNA hel 97.8 0.0012 2.7E-08 64.1 16.1 69 212-283 268-336 (629)
158 KOG0329|consensus 97.8 1.9E-05 4.1E-10 66.3 3.2 47 131-177 302-348 (387)
159 PRK11057 ATP-dependent DNA hel 97.8 0.00086 1.9E-08 65.0 15.1 220 55-283 49-327 (607)
160 PLN03137 ATP-dependent DNA hel 97.8 0.00025 5.5E-09 71.6 11.5 70 211-283 702-771 (1195)
161 COG4098 comFA Superfamily II D 97.7 0.00025 5.4E-09 62.1 9.8 106 62-172 293-402 (441)
162 PRK04837 ATP-dependent RNA hel 97.6 6.4E-05 1.4E-09 69.7 4.0 69 212-283 278-346 (423)
163 CHL00122 secA preprotein trans 97.5 0.0008 1.7E-08 66.2 10.9 115 26-144 374-491 (870)
164 COG1203 CRISPR-associated heli 97.5 0.00037 8E-09 68.9 8.7 107 65-174 431-538 (733)
165 KOG0298|consensus 97.5 3.8E-05 8.2E-10 76.9 1.8 91 186-283 1215-1308(1394)
166 PF13871 Helicase_C_4: Helicas 97.5 7.4E-05 1.6E-09 64.5 3.1 60 115-177 52-119 (278)
167 PRK01297 ATP-dependent RNA hel 97.4 0.00018 3.8E-09 67.8 4.6 68 213-283 359-426 (475)
168 KOG0331|consensus 97.4 0.0054 1.2E-07 57.4 14.2 219 56-283 138-432 (519)
169 TIGR03817 DECH_helic helicase/ 97.3 0.0072 1.6E-07 60.0 14.9 67 214-283 304-370 (742)
170 KOG0330|consensus 97.3 0.0027 5.9E-08 56.6 10.1 219 56-283 108-391 (476)
171 KOG0353|consensus 97.2 0.00094 2E-08 59.3 6.9 111 56-169 297-409 (695)
172 PRK10590 ATP-dependent RNA hel 97.2 0.00031 6.7E-09 65.8 4.1 69 212-283 268-336 (456)
173 COG1204 Superfamily II helicas 97.2 0.00075 1.6E-08 66.7 6.8 110 59-172 238-394 (766)
174 KOG4150|consensus 97.2 0.0014 2.9E-08 61.2 7.8 114 56-173 507-629 (1034)
175 PTZ00424 helicase 45; Provisio 97.1 0.00049 1.1E-08 63.2 4.1 69 212-283 290-358 (401)
176 COG1197 Mfd Transcription-repa 97.1 0.004 8.6E-08 62.9 10.1 101 71-174 800-903 (1139)
177 COG0514 RecQ Superfamily II DN 97.0 0.0068 1.5E-07 57.7 10.8 201 76-283 59-321 (590)
178 PRK09751 putative ATP-dependen 96.9 0.011 2.5E-07 62.1 12.4 65 216-283 304-368 (1490)
179 PHA02558 uvsW UvsW helicase; P 96.9 0.0011 2.3E-08 62.9 4.5 70 212-283 367-436 (501)
180 COG0513 SrmB Superfamily II DN 96.9 0.00084 1.8E-08 63.7 3.7 219 55-283 75-364 (513)
181 TIGR00595 priA primosomal prot 96.8 0.062 1.4E-06 51.0 15.5 95 55-153 6-101 (505)
182 PF13307 Helicase_C_2: Helicas 96.8 0.0028 6.1E-08 51.0 5.3 82 71-159 6-95 (167)
183 TIGR00348 hsdR type I site-spe 96.7 0.016 3.4E-07 56.9 11.3 95 74-171 514-634 (667)
184 KOG0328|consensus 96.6 0.0023 5.1E-08 54.7 4.2 69 212-283 289-357 (400)
185 PRK02362 ski2-like helicase; P 96.5 0.018 4E-07 57.3 10.4 66 215-283 305-379 (737)
186 COG1200 RecG RecG-like helicas 96.4 0.14 3.1E-06 49.2 15.0 200 56-270 293-561 (677)
187 PRK12902 secA preprotein trans 96.4 0.034 7.3E-07 55.3 10.7 114 27-144 390-506 (939)
188 TIGR01407 dinG_rel DnaQ family 96.2 0.048 1E-06 55.2 11.4 93 62-160 661-760 (850)
189 COG4096 HsdR Type I site-speci 96.0 0.027 5.8E-07 55.1 8.0 94 75-171 427-525 (875)
190 KOG0952|consensus 96.0 0.026 5.6E-07 56.4 7.7 100 70-172 345-477 (1230)
191 COG1199 DinG Rad3-related DNA 96.0 0.053 1.1E-06 53.2 10.1 91 62-157 466-560 (654)
192 KOG0338|consensus 95.9 0.36 7.9E-06 45.0 14.2 69 212-283 449-517 (691)
193 PRK13767 ATP-dependent helicas 95.8 0.0097 2.1E-07 60.2 4.4 67 214-283 315-381 (876)
194 PF02399 Herpes_ori_bp: Origin 95.8 0.12 2.5E-06 51.0 11.4 108 58-175 267-380 (824)
195 COG0653 SecA Preprotein transl 95.7 0.045 9.7E-07 54.0 8.1 118 56-178 411-539 (822)
196 KOG0348|consensus 95.7 0.018 4E-07 53.6 5.0 69 212-283 470-538 (708)
197 KOG0951|consensus 95.6 0.073 1.6E-06 54.4 9.3 70 99-172 608-688 (1674)
198 KOG0950|consensus 95.6 0.023 5E-07 56.2 5.8 101 69-173 455-598 (1008)
199 COG1061 SSL2 DNA or RNA helica 95.5 0.016 3.4E-07 54.1 4.3 66 216-284 309-374 (442)
200 COG4889 Predicted helicase [Ge 95.5 0.039 8.4E-07 54.4 6.8 74 98-172 499-573 (1518)
201 PF13871 Helicase_C_4: Helicas 95.4 0.015 3.3E-07 50.3 3.6 51 230-283 52-110 (278)
202 PF06862 DUF1253: Protein of u 95.4 0.25 5.3E-06 45.8 11.6 110 57-168 280-393 (442)
203 KOG1123|consensus 95.4 0.025 5.5E-07 52.3 4.9 69 213-283 562-631 (776)
204 KOG0920|consensus 95.3 0.044 9.4E-07 54.8 6.8 112 57-171 394-532 (924)
205 TIGR00596 rad1 DNA repair prot 95.3 0.02 4.4E-07 57.0 4.3 43 54-96 266-317 (814)
206 COG1643 HrpA HrpA-like helicas 95.3 0.11 2.3E-06 52.0 9.3 88 62-152 246-338 (845)
207 KOG0339|consensus 95.2 0.51 1.1E-05 44.1 12.6 220 55-283 269-559 (731)
208 KOG4284|consensus 95.2 0.046 9.9E-07 52.2 6.0 71 210-283 293-363 (980)
209 KOG0949|consensus 94.8 0.032 6.8E-07 55.5 4.1 68 103-173 967-1035(1330)
210 PRK07246 bifunctional ATP-depe 94.8 0.43 9.3E-06 48.1 12.2 92 62-159 635-728 (820)
211 KOG0336|consensus 94.7 1.1 2.3E-05 40.9 13.1 89 192-283 465-556 (629)
212 PRK08074 bifunctional ATP-depe 94.6 0.45 9.7E-06 48.7 11.8 96 61-159 738-839 (928)
213 COG1111 MPH1 ERCC4-like helica 94.4 0.062 1.3E-06 49.8 4.8 61 220-283 406-466 (542)
214 KOG0354|consensus 94.3 0.06 1.3E-06 52.4 4.6 60 221-283 456-515 (746)
215 KOG0345|consensus 94.3 0.055 1.2E-06 49.7 4.1 223 53-283 50-348 (567)
216 KOG0953|consensus 94.1 0.053 1.2E-06 50.8 3.8 54 215-270 383-436 (700)
217 KOG0333|consensus 93.9 0.052 1.1E-06 50.5 3.2 86 195-283 520-608 (673)
218 KOG0947|consensus 93.7 0.23 5E-06 49.6 7.3 108 62-173 554-710 (1248)
219 PRK11747 dinG ATP-dependent DN 93.6 0.89 1.9E-05 45.1 11.6 93 61-158 521-618 (697)
220 KOG0922|consensus 93.4 0.55 1.2E-05 45.1 9.1 101 74-177 258-381 (674)
221 COG1110 Reverse gyrase [DNA re 93.3 0.55 1.2E-05 47.4 9.2 88 58-155 322-416 (1187)
222 PRK14701 reverse gyrase; Provi 93.2 5.1 0.00011 43.6 16.9 80 54-135 102-187 (1638)
223 PRK01172 ski2-like helicase; P 92.9 0.12 2.6E-06 51.0 4.2 64 216-283 288-360 (674)
224 KOG0351|consensus 92.8 0.67 1.5E-05 47.1 9.4 203 78-283 308-576 (941)
225 KOG0326|consensus 92.7 0.075 1.6E-06 46.6 2.2 70 211-283 344-413 (459)
226 TIGR01054 rgy reverse gyrase. 92.6 2.3 5E-05 44.7 13.1 80 54-135 101-187 (1171)
227 PRK05580 primosome assembly pr 92.5 1.6 3.4E-05 43.2 11.4 94 56-153 172-266 (679)
228 TIGR00631 uvrb excinuclease AB 92.3 0.13 2.7E-06 50.5 3.4 96 185-283 435-538 (655)
229 KOG0332|consensus 92.2 0.19 4.1E-06 45.0 4.0 70 211-283 352-427 (477)
230 TIGR03117 cas_csf4 CRISPR-asso 92.1 1.5 3.3E-05 42.7 10.5 96 73-174 470-576 (636)
231 KOG0340|consensus 92.1 0.18 3.8E-06 44.9 3.7 71 210-283 275-345 (442)
232 PRK05298 excinuclease ABC subu 91.9 0.14 3.1E-06 50.2 3.2 96 185-283 439-542 (652)
233 KOG0352|consensus 91.3 2.5 5.5E-05 38.8 10.1 214 56-283 46-346 (641)
234 TIGR01587 cas3_core CRISPR-ass 91.2 0.26 5.5E-06 44.5 4.0 63 215-283 250-316 (358)
235 KOG0327|consensus 91.1 0.27 5.9E-06 44.0 3.9 70 211-283 285-354 (397)
236 PRK09401 reverse gyrase; Revie 91.0 4.4 9.5E-05 42.7 13.1 66 211-283 353-428 (1176)
237 KOG1133|consensus 90.7 6.2 0.00014 38.5 12.6 145 9-157 549-721 (821)
238 PRK00254 ski2-like helicase; P 90.3 0.23 5E-06 49.4 3.2 66 215-283 297-370 (720)
239 KOG0923|consensus 89.9 1 2.3E-05 43.4 6.8 93 56-151 450-556 (902)
240 PRK14873 primosome assembly pr 89.8 2.7 5.8E-05 41.4 9.9 78 56-136 170-249 (665)
241 TIGR00604 rad3 DNA repair heli 89.6 3.1 6.8E-05 41.3 10.4 96 62-159 509-619 (705)
242 KOG0335|consensus 89.5 0.43 9.4E-06 44.3 4.0 70 211-283 359-428 (482)
243 TIGR01970 DEAH_box_HrpB ATP-de 89.3 0.41 8.9E-06 48.1 4.0 68 213-283 236-321 (819)
244 smart00492 HELICc3 helicase su 89.3 4 8.6E-05 31.7 8.7 48 108-157 31-80 (141)
245 PRK11448 hsdR type I restricti 88.8 0.63 1.4E-05 48.5 5.0 64 217-284 735-798 (1123)
246 KOG0948|consensus 88.7 2 4.3E-05 42.2 7.8 99 72-174 381-527 (1041)
247 COG1197 Mfd Transcription-repa 88.4 29 0.00064 36.2 16.1 202 56-270 625-883 (1139)
248 KOG0341|consensus 88.1 0.36 7.9E-06 43.5 2.4 69 212-283 444-512 (610)
249 COG1198 PriA Primosomal protei 87.5 2.5 5.5E-05 41.8 8.0 77 55-133 226-303 (730)
250 COG1198 PriA Primosomal protei 87.5 1.2 2.6E-05 44.0 5.8 88 87-177 493-596 (730)
251 KOG0924|consensus 87.3 0.99 2.1E-05 43.8 4.8 116 58-176 542-687 (1042)
252 TIGR02621 cas3_GSU0051 CRISPR- 87.2 0.59 1.3E-05 46.9 3.5 63 217-283 298-374 (844)
253 PRK12898 secA preprotein trans 87.2 0.53 1.1E-05 45.9 3.1 68 211-283 495-570 (656)
254 PRK09200 preprotein translocas 87.1 0.75 1.6E-05 45.9 4.1 68 211-283 450-525 (790)
255 smart00491 HELICc2 helicase su 86.7 3.8 8.2E-05 31.8 7.2 56 102-158 23-82 (142)
256 KOG0344|consensus 86.3 0.9 2E-05 43.0 4.0 67 213-282 412-478 (593)
257 KOG0350|consensus 85.3 0.91 2E-05 42.4 3.4 67 213-282 457-523 (620)
258 PRK11664 ATP-dependent RNA hel 85.3 0.87 1.9E-05 45.9 3.6 55 213-270 239-293 (812)
259 COG0556 UvrB Helicase subunit 84.7 0.61 1.3E-05 43.9 2.1 104 176-283 431-542 (663)
260 KOG0926|consensus 84.1 0.63 1.4E-05 45.9 2.0 58 116-173 619-694 (1172)
261 TIGR00963 secA preprotein tran 83.6 1.3 2.7E-05 43.9 3.8 68 211-283 427-501 (745)
262 KOG1513|consensus 82.6 0.56 1.2E-05 46.1 1.0 57 117-176 850-914 (1300)
263 KOG0334|consensus 82.1 35 0.00077 35.0 13.1 57 211-270 635-691 (997)
264 TIGR00365 monothiol glutaredox 81.8 16 0.00036 26.1 8.3 48 74-121 11-64 (97)
265 PF10593 Z1: Z1 domain; Inter 81.8 4.1 8.8E-05 34.7 5.9 80 78-163 91-171 (239)
266 KOG0342|consensus 81.2 2.3 5E-05 39.6 4.3 70 211-283 352-421 (543)
267 COG4889 Predicted helicase [Ge 81.2 4 8.7E-05 41.1 6.1 68 214-283 500-569 (1518)
268 cd03028 GRX_PICOT_like Glutare 78.1 16 0.00035 25.7 7.2 45 74-118 7-57 (90)
269 TIGR03714 secA2 accessory Sec 78.0 2 4.4E-05 42.7 3.1 67 211-283 446-521 (762)
270 PRK05728 DNA polymerase III su 77.3 21 0.00046 27.7 8.2 42 56-97 11-52 (142)
271 PF04364 DNA_pol3_chi: DNA pol 77.0 16 0.00034 28.2 7.3 38 60-97 15-52 (137)
272 cd03418 GRX_GRXb_1_3_like Glut 76.5 19 0.00042 23.8 7.3 57 76-133 1-58 (75)
273 KOG0343|consensus 76.5 3.2 6.9E-05 39.4 3.8 69 212-283 338-406 (758)
274 COG4581 Superfamily II RNA hel 76.4 3 6.6E-05 42.7 3.9 68 103-174 449-525 (1041)
275 cd06533 Glyco_transf_WecG_TagA 75.9 36 0.00078 27.2 9.5 72 60-133 32-106 (171)
276 PRK12906 secA preprotein trans 75.9 2.5 5.4E-05 42.2 3.1 68 211-283 462-537 (796)
277 PHA02653 RNA helicase NPH-II; 75.3 4.1 8.8E-05 40.2 4.4 67 213-283 421-499 (675)
278 COG1205 Distinct helicase fami 75.1 60 0.0013 33.2 12.6 67 214-283 339-406 (851)
279 TIGR02562 cas3_yersinia CRISPR 74.2 12 0.00026 38.7 7.4 97 77-176 760-884 (1110)
280 PRK09694 helicase Cas3; Provis 73.0 23 0.0005 36.2 9.1 65 215-283 589-659 (878)
281 KOG2340|consensus 72.5 11 0.00025 35.7 6.2 117 57-175 533-652 (698)
282 PRK06646 DNA polymerase III su 71.1 13 0.00028 29.4 5.6 44 54-97 9-52 (154)
283 TIGR00696 wecB_tagA_cpsF bacte 69.5 59 0.0013 26.3 9.7 72 60-133 34-107 (177)
284 PF11019 DUF2608: Protein of u 68.3 25 0.00055 30.1 7.3 53 56-108 160-212 (252)
285 PRK10824 glutaredoxin-4; Provi 68.0 44 0.00095 25.0 7.6 55 65-121 6-66 (115)
286 PF03808 Glyco_tran_WecB: Glyc 68.0 61 0.0013 25.9 9.3 72 60-133 34-108 (172)
287 KOG0925|consensus 67.8 48 0.001 31.4 9.1 113 60-177 237-378 (699)
288 cd01524 RHOD_Pyr_redox Member 67.0 9.6 0.00021 26.6 3.8 38 72-109 49-86 (90)
289 cd01520 RHOD_YbbB Member of th 66.2 14 0.00031 27.8 4.8 38 72-109 84-122 (128)
290 cd00046 DEXDc DEAD-like helica 64.5 52 0.0011 23.9 8.2 59 56-114 10-73 (144)
291 COG1201 Lhr Lhr-like helicases 64.5 8.2 0.00018 38.8 3.9 64 217-283 282-345 (814)
292 cd00268 DEADc DEAD-box helicas 63.6 77 0.0017 25.5 9.4 60 56-115 46-114 (203)
293 PF12622 NpwBP: mRNA biogenesi 63.5 3.6 7.8E-05 25.5 0.8 13 263-275 3-15 (48)
294 cd01523 RHOD_Lact_B Member of 63.0 13 0.00028 26.4 3.9 38 72-109 59-96 (100)
295 cd03031 GRX_GRX_like Glutaredo 62.4 55 0.0012 25.6 7.5 46 76-121 1-53 (147)
296 KOG0349|consensus 60.4 14 0.0003 34.3 4.3 68 213-283 532-599 (725)
297 COG4098 comFA Superfamily II D 60.3 23 0.00049 32.0 5.4 60 54-113 124-185 (441)
298 TIGR03158 cas3_cyano CRISPR-as 59.7 8.6 0.00019 34.8 3.0 58 214-283 299-356 (357)
299 PF13245 AAA_19: Part of AAA d 59.3 33 0.00072 23.3 5.2 39 56-94 20-62 (76)
300 COG0626 MetC Cystathionine bet 59.2 89 0.0019 28.8 9.4 26 147-172 150-175 (396)
301 cd01534 4RHOD_Repeat_3 Member 59.1 20 0.00043 25.2 4.3 35 74-108 56-90 (95)
302 cd01528 RHOD_2 Member of the R 56.4 37 0.0008 24.1 5.4 37 73-109 57-94 (101)
303 smart00450 RHOD Rhodanese Homo 56.1 18 0.0004 24.9 3.7 38 72-109 54-92 (100)
304 COG2927 HolC DNA polymerase II 54.3 76 0.0017 24.7 6.9 38 61-98 16-53 (144)
305 PTZ00062 glutaredoxin; Provisi 54.0 1.3E+02 0.0028 25.0 9.5 68 63-133 102-175 (204)
306 cd01518 RHOD_YceA Member of th 51.3 23 0.0005 25.2 3.6 38 72-109 59-97 (101)
307 COG1110 Reverse gyrase [DNA re 51.1 1.2E+02 0.0025 31.7 9.2 78 56-135 107-190 (1187)
308 cd01533 4RHOD_Repeat_2 Member 50.8 49 0.0011 23.8 5.3 47 63-109 54-103 (109)
309 TIGR00376 DNA helicase, putati 50.5 51 0.0011 32.5 6.8 52 56-107 183-234 (637)
310 cd01529 4RHOD_Repeats Member o 49.4 34 0.00075 24.0 4.2 37 72-108 54-91 (96)
311 cd01521 RHOD_PspE2 Member of t 49.1 33 0.00072 24.9 4.2 38 72-109 62-101 (110)
312 cd00640 Trp-synth-beta_II Tryp 49.0 1.2E+02 0.0027 25.4 8.3 66 56-121 28-96 (244)
313 PF09419 PGP_phosphatase: Mito 48.3 1.4E+02 0.0029 24.0 7.8 55 63-121 64-128 (168)
314 TIGR01138 cysM cysteine syntha 47.5 1.3E+02 0.0028 26.3 8.3 67 55-121 35-105 (290)
315 COG2179 Predicted hydrolase of 47.5 1.5E+02 0.0032 23.9 8.1 95 61-161 49-146 (175)
316 PRK06381 threonine synthase; V 46.9 1.3E+02 0.0027 26.7 8.3 67 55-121 43-109 (319)
317 cd01449 TST_Repeat_2 Thiosulfa 46.8 50 0.0011 24.0 4.9 47 62-108 65-113 (118)
318 KOG0780|consensus 46.2 2.5E+02 0.0054 26.1 10.3 79 54-134 109-191 (483)
319 PF03709 OKR_DC_1_N: Orn/Lys/A 46.1 1.2E+02 0.0026 22.4 9.3 100 59-162 2-105 (115)
320 cd01447 Polysulfide_ST Polysul 45.3 23 0.0005 25.0 2.8 37 72-108 59-96 (103)
321 cd01526 RHOD_ThiF Member of th 44.4 26 0.00057 26.0 3.1 38 72-109 70-109 (122)
322 cd01527 RHOD_YgaP Member of th 44.1 42 0.00091 23.6 4.0 37 72-108 52-89 (99)
323 PRK11784 tRNA 2-selenouridine 43.4 1.2E+02 0.0027 27.3 7.7 48 73-121 87-135 (345)
324 TIGR03167 tRNA_sel_U_synt tRNA 43.4 67 0.0014 28.6 5.8 39 72-110 72-111 (311)
325 PLN02356 phosphateglycerate ki 43.0 1.6E+02 0.0034 27.5 8.4 66 56-121 81-150 (423)
326 PRK10329 glutaredoxin-like pro 42.4 1.1E+02 0.0024 20.9 7.5 54 76-132 2-56 (81)
327 cd06448 L-Ser-dehyd Serine deh 42.2 1.4E+02 0.0031 26.4 7.8 66 56-121 29-97 (316)
328 KOG0347|consensus 41.7 23 0.00049 34.0 2.7 64 213-279 487-550 (731)
329 PRK13958 N-(5'-phosphoribosyl) 41.5 1.2E+02 0.0026 25.1 6.8 50 62-113 41-90 (207)
330 PF00581 Rhodanese: Rhodanese- 40.8 65 0.0014 22.8 4.7 38 72-109 65-108 (113)
331 TIGR02981 phageshock_pspE phag 40.7 1E+02 0.0022 22.1 5.6 36 73-108 57-92 (101)
332 PRK11131 ATP-dependent RNA hel 40.7 25 0.00055 37.4 3.1 48 216-268 316-363 (1294)
333 TIGR01967 DEAH_box_HrpA ATP-de 40.6 28 0.00062 37.0 3.5 51 214-269 307-357 (1283)
334 KOG0346|consensus 40.4 44 0.00096 31.2 4.2 73 209-283 288-394 (569)
335 cd01522 RHOD_1 Member of the R 40.2 66 0.0014 23.7 4.7 38 72-109 62-100 (117)
336 PF07652 Flavi_DEAD: Flaviviru 39.9 78 0.0017 24.8 5.0 45 56-100 14-59 (148)
337 cd01519 RHOD_HSP67B2 Member of 39.6 41 0.00089 23.9 3.4 36 73-108 65-101 (106)
338 PRK11761 cysM cysteine synthas 38.6 2E+02 0.0043 25.2 8.1 67 55-121 39-109 (296)
339 PRK01222 N-(5'-phosphoribosyl) 38.5 1.5E+02 0.0033 24.5 7.0 54 63-118 44-97 (210)
340 KOG1513|consensus 38.3 66 0.0014 32.5 5.2 70 211-283 818-906 (1300)
341 cd01525 RHOD_Kc Member of the 38.3 49 0.0011 23.5 3.6 36 74-109 65-101 (105)
342 cd01561 CBS_like CBS_like: Thi 38.0 2.3E+02 0.0049 24.6 8.4 66 56-121 30-99 (291)
343 PF00291 PALP: Pyridoxal-phosp 37.8 2.3E+02 0.005 24.4 8.5 67 55-121 36-102 (306)
344 PF13086 AAA_11: AAA domain; P 37.1 1.1E+02 0.0024 24.9 6.1 41 56-96 27-75 (236)
345 PRK12900 secA preprotein trans 36.8 31 0.00067 35.5 3.0 68 211-283 620-695 (1025)
346 PLN02160 thiosulfate sulfurtra 36.8 72 0.0016 24.3 4.5 38 72-109 79-117 (136)
347 cd01535 4RHOD_Repeat_4 Member 36.4 94 0.002 24.0 5.1 46 62-108 38-84 (145)
348 PRK10638 glutaredoxin 3; Provi 36.3 1.4E+02 0.003 20.3 7.1 55 76-132 3-58 (83)
349 cd00158 RHOD Rhodanese Homolog 36.1 80 0.0017 21.1 4.4 38 72-109 48-86 (89)
350 PF02492 cobW: CobW/HypB/UreG, 35.6 1.5E+02 0.0031 23.7 6.3 79 55-134 9-92 (178)
351 KOG0337|consensus 35.4 24 0.00053 32.6 1.8 74 211-287 283-356 (529)
352 PRK03692 putative UDP-N-acetyl 35.4 2.8E+02 0.0061 23.6 9.8 73 60-134 91-165 (243)
353 cd01448 TST_Repeat_1 Thiosulfa 35.3 97 0.0021 22.6 5.0 37 73-109 78-116 (122)
354 PRK10287 thiosulfate:cyanide s 34.6 1.3E+02 0.0028 21.8 5.3 46 63-108 48-94 (104)
355 cd01532 4RHOD_Repeat_1 Member 34.3 83 0.0018 21.8 4.2 36 73-108 49-87 (92)
356 cd01444 GlpE_ST GlpE sulfurtra 33.7 75 0.0016 21.9 3.9 37 72-108 54-91 (96)
357 cd01563 Thr-synth_1 Threonine 33.6 2.2E+02 0.0049 25.1 7.8 67 55-121 50-116 (324)
358 PRK05320 rhodanese superfamily 32.9 92 0.002 26.8 5.0 38 73-110 174-212 (257)
359 PF06862 DUF1253: Protein of u 32.9 54 0.0012 30.7 3.7 66 211-278 322-388 (442)
360 TIGR01139 cysK cysteine syntha 32.8 2.9E+02 0.0063 24.0 8.3 66 56-121 34-103 (298)
361 COG0300 DltE Short-chain dehyd 32.7 3.3E+02 0.0072 23.6 9.0 82 56-139 14-97 (265)
362 PF12689 Acid_PPase: Acid Phos 32.7 2.1E+02 0.0045 22.9 6.6 65 53-121 103-167 (169)
363 PLN00011 cysteine synthase 32.4 3E+02 0.0066 24.4 8.4 67 55-121 44-115 (323)
364 PRK05569 flavodoxin; Provision 32.0 2.2E+02 0.0048 21.4 7.3 58 59-116 68-132 (141)
365 COG0607 PspE Rhodanese-related 32.0 49 0.0011 23.5 2.8 37 72-108 59-96 (110)
366 TIGR01136 cysKM cysteine synth 31.3 3.1E+02 0.0067 23.9 8.2 66 56-121 35-104 (299)
367 PF00270 DEAD: DEAD/DEAH box h 31.3 2.4E+02 0.0052 21.5 9.0 75 56-136 24-105 (169)
368 cd03027 GRX_DEP Glutaredoxin ( 30.7 1.6E+02 0.0034 19.3 7.2 56 76-133 2-58 (73)
369 PF04007 DUF354: Protein of un 30.4 2.2E+02 0.0049 25.6 7.1 46 56-104 9-54 (335)
370 PRK10717 cysteine synthase A; 30.1 3.3E+02 0.0072 24.1 8.3 66 56-121 41-110 (330)
371 PF13344 Hydrolase_6: Haloacid 30.0 84 0.0018 22.6 3.6 39 63-101 19-58 (101)
372 KOG0952|consensus 29.6 7E+02 0.015 26.4 12.7 133 147-283 301-473 (1230)
373 PF13607 Succ_CoA_lig: Succiny 29.6 1.9E+02 0.0041 22.2 5.8 59 76-135 3-63 (138)
374 TIGR03865 PQQ_CXXCW PQQ-depend 29.5 1.7E+02 0.0037 23.1 5.7 38 72-109 114-153 (162)
375 COG2247 LytB Putative cell wal 29.5 3.3E+02 0.0071 24.4 7.7 62 72-133 74-139 (337)
376 COG1099 Predicted metal-depend 29.4 3.6E+02 0.0077 22.9 8.0 78 57-142 137-218 (254)
377 KOG0949|consensus 29.2 81 0.0017 32.7 4.3 61 220-283 969-1030(1330)
378 PRK06608 threonine dehydratase 29.2 3.1E+02 0.0066 24.6 7.9 67 55-121 50-118 (338)
379 PRK13107 preprotein translocas 29.2 51 0.0011 33.7 3.1 68 211-283 471-575 (908)
380 cd05212 NAD_bind_m-THF_DH_Cycl 28.6 2.8E+02 0.006 21.4 6.5 50 59-108 11-62 (140)
381 cd01562 Thr-dehyd Threonine de 28.4 2.2E+02 0.0047 24.8 6.7 67 55-121 44-111 (304)
382 PF09413 DUF2007: Domain of un 28.1 1.2E+02 0.0026 19.6 3.9 32 77-108 2-33 (67)
383 COG0075 Serine-pyruvate aminot 27.6 4.3E+02 0.0093 24.3 8.5 59 59-118 65-127 (383)
384 TIGR02991 ectoine_eutB ectoine 27.5 3.7E+02 0.008 23.8 8.0 67 55-121 46-113 (317)
385 PRK08329 threonine synthase; V 27.5 4.1E+02 0.0089 23.8 8.4 67 55-121 84-150 (347)
386 COG0608 RecJ Single-stranded D 27.2 3.4E+02 0.0075 25.7 8.2 92 59-155 21-122 (491)
387 COG2241 CobL Precorrin-6B meth 26.9 2.8E+02 0.0061 23.1 6.6 29 72-100 138-166 (210)
388 PF10740 DUF2529: Protein of u 26.8 1E+02 0.0022 24.8 3.8 34 72-105 80-115 (172)
389 PRK07409 threonine synthase; V 26.7 3.6E+02 0.0077 24.2 7.9 66 56-121 59-125 (353)
390 KOG0329|consensus 26.0 1.8E+02 0.0038 25.3 5.3 38 246-283 302-339 (387)
391 COG4152 ABC-type uncharacteriz 25.8 4.5E+02 0.0097 22.9 7.6 71 27-108 141-214 (300)
392 TIGR01137 cysta_beta cystathio 25.7 4E+02 0.0087 24.7 8.4 67 55-121 38-108 (454)
393 TIGR00348 hsdR type I site-spe 25.4 1.2E+02 0.0025 30.2 4.8 53 229-284 580-632 (667)
394 COG2604 Uncharacterized protei 25.4 75 0.0016 30.7 3.3 127 15-153 191-318 (594)
395 PRK01415 hypothetical protein; 25.4 93 0.002 26.7 3.6 39 72-110 169-208 (247)
396 TIGR00260 thrC threonine synth 25.3 3.7E+02 0.0079 23.7 7.7 67 55-121 51-118 (328)
397 PRK06352 threonine synthase; V 25.3 4.3E+02 0.0092 23.8 8.1 67 55-121 55-122 (351)
398 KOG1805|consensus 24.9 1.8E+02 0.0038 30.2 5.8 52 56-107 695-746 (1100)
399 TIGR02196 GlrX_YruB Glutaredox 24.3 1.9E+02 0.0042 18.2 7.1 54 77-132 2-56 (74)
400 PHA02977 hypothetical protein; 24.1 32 0.00069 26.6 0.5 12 265-276 157-168 (201)
401 COG1202 Superfamily II helicas 24.1 43 0.00093 32.5 1.4 69 211-283 462-535 (830)
402 cd01445 TST_Repeats Thiosulfat 23.9 2.2E+02 0.0047 21.7 5.2 49 61-109 81-134 (138)
403 PRK06721 threonine synthase; R 23.2 5.2E+02 0.011 23.2 8.3 66 56-121 56-122 (352)
404 PRK07476 eutB threonine dehydr 23.2 3.2E+02 0.0069 24.2 6.8 67 55-121 46-113 (322)
405 PF00462 Glutaredoxin: Glutare 23.2 2E+02 0.0043 17.9 7.0 44 77-120 1-45 (60)
406 PF01591 6PF2K: 6-phosphofruct 23.1 1.9E+02 0.0042 24.3 5.1 46 86-133 83-129 (222)
407 cd01446 DSP_MapKP N-terminal r 23.0 1.3E+02 0.0027 22.5 3.7 36 73-108 74-121 (132)
408 TIGR02181 GRX_bact Glutaredoxi 22.8 2.4E+02 0.0051 18.6 6.2 42 78-119 2-44 (79)
409 COG0541 Ffh Signal recognition 22.7 4.9E+02 0.011 24.4 7.9 85 54-141 108-196 (451)
410 PRK13104 secA preprotein trans 22.7 88 0.0019 32.1 3.4 68 211-283 466-571 (896)
411 PRK09860 putative alcohol dehy 22.7 5.9E+02 0.013 23.2 8.8 66 55-122 14-86 (383)
412 PRK01122 potassium-transportin 22.5 7.9E+02 0.017 24.6 10.2 102 66-170 416-566 (679)
413 KOG4150|consensus 22.3 1.3E+02 0.0028 29.3 4.1 65 216-283 560-624 (1034)
414 PF08248 Tryp_FSAP: Tryptophyl 21.7 41 0.00089 14.2 0.4 7 269-275 3-9 (12)
415 PLN02556 cysteine synthase/L-3 21.7 5.8E+02 0.013 23.2 8.3 66 56-121 87-157 (368)
416 PRK07445 O-succinylbenzoic aci 21.6 3.5E+02 0.0075 25.0 7.1 86 25-121 5-92 (452)
417 PRK06756 flavodoxin; Provision 21.5 3.7E+02 0.008 20.4 7.7 55 60-114 69-134 (148)
418 PF10787 YfmQ: Uncharacterised 21.3 2.7E+02 0.0058 21.6 4.9 68 76-143 16-108 (149)
419 PF00072 Response_reg: Respons 21.3 2.9E+02 0.0063 19.1 6.0 60 72-135 20-80 (112)
420 PF13514 AAA_27: AAA domain 21.2 1.9E+02 0.0041 30.6 5.7 38 56-94 1065-1102(1111)
421 PLN02363 phosphoribosylanthran 21.2 3.9E+02 0.0084 23.0 6.7 50 62-113 87-137 (256)
422 PRK09189 uroporphyrinogen-III 20.9 2.8E+02 0.0061 23.1 5.8 76 59-137 103-181 (240)
423 cd05017 SIS_PGI_PMI_1 The memb 20.8 3.4E+02 0.0074 19.8 5.8 35 73-107 43-79 (119)
424 KOG0701|consensus 20.8 54 0.0012 35.7 1.5 94 76-172 294-399 (1606)
425 PLN02565 cysteine synthase 20.6 6E+02 0.013 22.5 8.5 67 55-121 42-113 (322)
426 PF01053 Cys_Met_Meta_PP: Cys/ 20.6 6.6E+02 0.014 23.0 10.2 115 57-175 54-169 (386)
427 PLN02723 3-mercaptopyruvate su 20.5 2E+02 0.0044 25.5 5.0 47 63-109 257-305 (320)
No 1
>KOG0385|consensus
Probab=100.00 E-value=9.7e-46 Score=340.52 Aligned_cols=199 Identities=67% Similarity=1.103 Sum_probs=186.1
Q ss_pred ccccchHHhcCCCccchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCccccccCchHHHHHHHHHHHHhCCCeEEEEe
Q psy10684 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFS 81 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs 81 (288)
||++++++++|.+++.+..+++++|+||+|||||||+++.++.+++...+|++..|+|+..|.++|..+.++|+||+|||
T Consensus 415 iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFS 494 (971)
T KOG0385|consen 415 ILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFS 494 (971)
T ss_pred HHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeH
Confidence 68999999999999889999999999999999999999999989999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchh
Q psy10684 82 QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMD 161 (288)
Q Consensus 82 ~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~ 161 (288)
|++.++|+|+.+|..+++.||+++|+++.++|..+|+.|+.+.+...|||+||.|||.|+||+.|++||+||.+|||..+
T Consensus 495 Qmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~D 574 (971)
T KOG0385|consen 495 QMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVD 574 (971)
T ss_pred HHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhh
Confidence 99999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhhcch-------HHHHHHHhhhhccc---cchhhhhhc
Q psy10684 162 LQAMVREAKILRRGSI-------KKALEAKMSRYRAP---FHQLRIAYG 200 (288)
Q Consensus 162 ~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~---~~~~~~~~~ 200 (288)
.||++|+|||||+++| +.+|++++.+..+. ++.+++.-+
T Consensus 575 LQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 575 LQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred hHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 9999999999999998 48888887776543 344444443
No 2
>KOG0384|consensus
Probab=100.00 E-value=5.7e-42 Score=328.40 Aligned_cols=202 Identities=47% Similarity=0.729 Sum_probs=178.3
Q ss_pred CccccchHHhcCCCccchHHHHHHHHHHHhhcCCCCCCCCCCCCCCC--------CCCccccccCchHHHHHHHHHHHHh
Q psy10684 1 MVLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPY--------TTDEHLVFNSGKMVVLDKLLPKLKA 72 (288)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~--------~~~~~~~~~s~K~~~l~~ll~~~~~ 72 (288)
|||++||.++.+|.+++..++++.||.||+|||||||+.+.+..-.. .....++.+|+|+-.|.+||.++++
T Consensus 618 ~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~ 697 (1373)
T KOG0384|consen 618 AILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKE 697 (1373)
T ss_pred HHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhc
Confidence 68999999999999999999999999999999999999886432111 2334467799999999999999999
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEe
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLY 152 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~ 152 (288)
.|+|||||||++.|+|+|+++|..+++++-+++|++..+-|+.+|++|+.+++.-.|||+||.|||.||||+.|++||+|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhh---ccccchhhhhhccC
Q psy10684 153 DSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRY---RAPFHQLRIAYGAN 202 (288)
Q Consensus 153 d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~---~~~~~~~~~~~~~~ 202 (288)
|.+|||...+||+.|||||||++.| +.++++-|.+. +..++.+++..+.+
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t 837 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDT 837 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhcc
Confidence 9999999999999999999999887 35666555443 34455556655543
No 3
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.2e-36 Score=298.86 Aligned_cols=188 Identities=66% Similarity=1.078 Sum_probs=167.4
Q ss_pred ccccchHHhcCCCccchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCccccccCchHHHHHHHHHHHHhCCCeEEEEe
Q psy10684 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFS 81 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs 81 (288)
+++++++.++.++ ....+++++++||+||+||+|+....+.+++....+.+..|+|+..|..+|..+...++||||||
T Consensus 417 ll~k~~~~l~~g~--~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFS 494 (1033)
T PLN03142 417 LLQKDLDVVNAGG--ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFS 494 (1033)
T ss_pred HHHHHHHHHhccc--cHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeeh
Confidence 4556667766654 45679999999999999999998877776777777788899999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchh
Q psy10684 82 QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMD 161 (288)
Q Consensus 82 ~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~ 161 (288)
||+.++++|+.+|...|+++++++|+++.++|+.++++|+.+++...|+|+||++||.||||+.|++||+||+||||..+
T Consensus 495 Qft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d 574 (1033)
T PLN03142 495 QMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVD 574 (1033)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHH
Confidence 99999999999999999999999999999999999999986666677899999999999999999999999999999999
Q ss_pred hhhhHHHHHHhhhcch-------HHHHHHHhhhhccc
Q psy10684 162 LQAMVREAKILRRGSI-------KKALEAKMSRYRAP 191 (288)
Q Consensus 162 ~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~ 191 (288)
.||+||+||+||+++| +.+|++++.+.+..
T Consensus 575 ~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~ 611 (1033)
T PLN03142 575 LQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYK 611 (1033)
T ss_pred HHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHH
Confidence 9999999999999987 47777776655443
No 4
>KOG0387|consensus
Probab=100.00 E-value=2.8e-34 Score=266.12 Aligned_cols=173 Identities=40% Similarity=0.595 Sum_probs=153.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCc-cccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHh-hc
Q psy10684 20 RLQNILMQLRKCSNHPYLFDGAEPGPPYTTDE-HLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCY-WR 97 (288)
Q Consensus 20 ~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~~~-~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~-~~ 97 (288)
+.|.-+..||++||||.|+...........+. ..+..|+|+.++..+++.+..++.++++|+|...|+|+|+..|. ..
T Consensus 491 ~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~ 570 (923)
T KOG0387|consen 491 NCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAK 570 (923)
T ss_pred cceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcC
Confidence 35666788999999999998754333333232 56778999999999999999999999999999999999999999 68
Q ss_pred CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 98 GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 98 ~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
|+.|++++|.++...|+.++++|+ ++..+.|||++|++||.|+||++|++||+|||+|||+.+.||..|++|+||++.|
T Consensus 571 ~ysylRmDGtT~~~~R~~lVd~Fn-e~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV 649 (923)
T KOG0387|consen 571 GYSYLRMDGTTPAALRQKLVDRFN-EDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDV 649 (923)
T ss_pred CceEEEecCCCccchhhHHHHhhc-CCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccce
Confidence 999999999999999999999999 7889999999999999999999999999999999999999999999999999987
Q ss_pred -------HHHHHHHhhhhccccc
Q psy10684 178 -------KKALEAKMSRYRAPFH 193 (288)
Q Consensus 178 -------~~~i~~~~~~~~~~~~ 193 (288)
..+|++++...+-.++
T Consensus 650 ~VYRL~t~gTIEEkiY~rQI~Kq 672 (923)
T KOG0387|consen 650 VVYRLMTAGTIEEKIYHRQIFKQ 672 (923)
T ss_pred EEEEEecCCcHHHHHHHHHHHHH
Confidence 4778888766654433
No 5
>KOG1002|consensus
Probab=100.00 E-value=3.6e-34 Score=253.60 Aligned_cols=145 Identities=28% Similarity=0.407 Sum_probs=135.5
Q ss_pred cccCchHHHHHHHHHHHHhCC--CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQE--SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~--~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
+..|.|+++|.+-|..+++++ -|.||||||+.++|.+.-.|.+.|+.++.+.|+|++..|...++.|+ ++.+|+|||
T Consensus 616 ~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~-nd~~c~vfL 694 (791)
T KOG1002|consen 616 WQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFK-NDIDCRVFL 694 (791)
T ss_pred hcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhc-cCCCeEEEE
Confidence 347999999999998877765 58999999999999999999999999999999999999999999999 899999999
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchhhhhh
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQLRIAY 199 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~~~~~ 199 (288)
+|.++||+.|||+.|++|+++||||||+.+.||.+|+|||||.++| +.+|++++.++++.+..++.+.
T Consensus 695 vSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaT 769 (791)
T KOG1002|consen 695 VSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHAT 769 (791)
T ss_pred EEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999997 5899999999998888876654
No 6
>KOG0389|consensus
Probab=100.00 E-value=1.8e-33 Score=260.55 Aligned_cols=172 Identities=45% Similarity=0.660 Sum_probs=153.3
Q ss_pred HHHHHHHHhhcCCCCCCCCCC----------------------------------------------CCCCCCCCccccc
Q psy10684 22 QNILMQLRKCSNHPYLFDGAE----------------------------------------------PGPPYTTDEHLVF 55 (288)
Q Consensus 22 ~~~l~~Lrq~~~hP~l~~~~~----------------------------------------------~~~~~~~~~~~~~ 55 (288)
-+.||+||++++||.|...-. ....+......+.
T Consensus 679 ~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~m 758 (941)
T KOG0389|consen 679 GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWM 758 (941)
T ss_pred chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhh
Confidence 458999999999999983210 1122333344566
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.|+|...|..+|..+..+|+||||||||+.|+|+|+..|...++.|++++|++...+|+.+|+.|+ .+..+.|||+||+
T Consensus 759 dSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn-~d~difVFLLSTK 837 (941)
T KOG0389|consen 759 DSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFN-TDKDIFVFLLSTK 837 (941)
T ss_pred hhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhc-cCCceEEEEEeec
Confidence 899999999999999999999999999999999999999999999999999999999999999999 8899999999999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQ 194 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~ 194 (288)
|||.||||++|++||++|.++||-...||.+||||+||+++| +.+|++.+.++...+-.
T Consensus 838 AGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~ 903 (941)
T KOG0389|consen 838 AGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLA 903 (941)
T ss_pred cCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999997 68999998887765433
No 7
>KOG0392|consensus
Probab=100.00 E-value=1.1e-32 Score=264.25 Aligned_cols=177 Identities=35% Similarity=0.539 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCCCCCC---------CCCCccccccCchHHHHHHHHHHHHh--------------CC
Q psy10684 18 KMRLQNILMQLRKCSNHPYLFDGAEPGPP---------YTTDEHLVFNSGKMVVLDKLLPKLKA--------------QE 74 (288)
Q Consensus 18 ~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~---------~~~~~~~~~~s~K~~~l~~ll~~~~~--------------~~ 74 (288)
+.+||+.|..||+.||||.|+.++..... ....-|-+..|+|+.+|..+|.+..- .+
T Consensus 1261 ~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsq 1340 (1549)
T KOG0392|consen 1261 KTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQ 1340 (1549)
T ss_pred hHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhcc
Confidence 78999999999999999999987522211 11122335689999999999988531 24
Q ss_pred CeEEEEecchHHHHHHHHHHhhc---CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWR---GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~---~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
++++||||+..++|+++..|-+. .+.|.+++|++++.+|++++++|| +++.+.|+|++|.+||.||||++|++||+
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN-~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFN-EDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhc-CCCceeEEEEeeeccccccccCCCceEEE
Confidence 79999999999999999988765 567889999999999999999999 88999999999999999999999999999
Q ss_pred ecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchh
Q psy10684 152 YDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 152 ~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
+|.+|||..+.||++|+||+||++.| ..+++||+.-++.++-.+
T Consensus 1420 vEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnv 1470 (1549)
T KOG0392|consen 1420 VEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNV 1470 (1549)
T ss_pred EecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHH
Confidence 99999999999999999999999997 488899988777766555
No 8
>KOG0386|consensus
Probab=99.97 E-value=9.7e-32 Score=254.19 Aligned_cols=202 Identities=48% Similarity=0.698 Sum_probs=169.2
Q ss_pred CccchHHHHHHHHHHHhhcCCCCCCCCCCCC-CCCCCCccccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHH
Q psy10684 14 GKLEKMRLQNILMQLRKCSNHPYLFDGAEPG-PPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILED 92 (288)
Q Consensus 14 ~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~-~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~ 92 (288)
+++.+..+++.+++||+|||||++....+.. .+.-....++..|+|+..|.++|..+...+++|+.|+|++..+++++.
T Consensus 665 g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEd 744 (1157)
T KOG0386|consen 665 GKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILED 744 (1157)
T ss_pred ccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 4567778999999999999999999543221 222222578889999999999999999999999999999999999999
Q ss_pred HHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 93 YCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 93 ~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
+|...++.|.+++|.++.++|...++.|+.+++.+.+||+||.+||.||||+.|++||+||++|||..+.||.+|+||+|
T Consensus 745 yL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrig 824 (1157)
T KOG0386|consen 745 YLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIG 824 (1157)
T ss_pred HHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchH-------HHHHHHhhhhc---cccchhhhhhccCCCcccccccchhh
Q psy10684 173 RRGSIK-------KALEAKMSRYR---APFHQLRIAYGANKGKNYTEEEDRYL 215 (288)
Q Consensus 173 q~~~v~-------~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~gi~ 215 (288)
|++.|. .++++++.... .....-++..|.....+..++++.+.
T Consensus 825 q~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn~st~~eR~~~L 877 (1157)
T KOG0386|consen 825 QKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDNKSTAEEREMFL 877 (1157)
T ss_pred chhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccCCCcHHHHHHHH
Confidence 999873 55666654442 22333355556655555555544443
No 9
>KOG0390|consensus
Probab=99.96 E-value=1.3e-29 Score=239.72 Aligned_cols=175 Identities=34% Similarity=0.566 Sum_probs=146.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCC---C------------CccccccCchHHHHHHHHHHHHhC-CCeEEEEecch
Q psy10684 21 LQNILMQLRKCSNHPYLFDGAEPGPPYT---T------------DEHLVFNSGKMVVLDKLLPKLKAQ-ESRVLIFSQMT 84 (288)
Q Consensus 21 ~~~~l~~Lrq~~~hP~l~~~~~~~~~~~---~------------~~~~~~~s~K~~~l~~ll~~~~~~-~~kviIFs~~~ 84 (288)
-|..++.|+++|+||.|+...+...... . .......|+|+..|..++....+. ..++++-++++
T Consensus 526 ~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~ 605 (776)
T KOG0390|consen 526 ALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYT 605 (776)
T ss_pred hhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHH
Confidence 6788999999999999996322111100 0 000112478888888888655544 57999999999
Q ss_pred HHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhh
Q psy10684 85 RMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQA 164 (288)
Q Consensus 85 ~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa 164 (288)
.+++.++..++.+|..++++||+++..+|+.+++.||++.+...|||+|++|||.||||.+|++||+||++|||+.+.||
T Consensus 606 ~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QA 685 (776)
T KOG0390|consen 606 QTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQA 685 (776)
T ss_pred HHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHH
Confidence 99999999999999999999999999999999999998877779999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcch-------HHHHHHHhhhhccccchh
Q psy10684 165 MVREAKILRRGSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 165 ~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
++|++|.||+++| ..++++++.+.+..++.+
T Consensus 686 maR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~l 723 (776)
T KOG0390|consen 686 MARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGL 723 (776)
T ss_pred HHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhh
Confidence 9999999999997 588888887776655443
No 10
>KOG4439|consensus
Probab=99.96 E-value=6.1e-29 Score=228.03 Aligned_cols=186 Identities=26% Similarity=0.378 Sum_probs=158.6
Q ss_pred hcCCCccchHHHHHHHHHHHhhcCCCCCCCCCCCC----------------------------------------CCC--
Q psy10684 10 VNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPG----------------------------------------PPY-- 47 (288)
Q Consensus 10 ~~~~~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~----------------------------------------~~~-- 47 (288)
..|......+.+|.+|+||||+|+||.+....-+. ++.
T Consensus 639 aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~ 718 (901)
T KOG4439|consen 639 AAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFP 718 (901)
T ss_pred hcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccch
Confidence 34556778888999999999999999776321100 000
Q ss_pred CCCccccccCchHHHHHHHHHHH-HhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCC
Q psy10684 48 TTDEHLVFNSGKMVVLDKLLPKL-KAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSD 126 (288)
Q Consensus 48 ~~~~~~~~~s~K~~~l~~ll~~~-~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~ 126 (288)
....+....|.|+..+++.++.+ ....+|++|-|||+.++..+...+...|..|..++|....++|+.+++.|+...++
T Consensus 719 ~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~ 798 (901)
T KOG4439|consen 719 DQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGG 798 (901)
T ss_pred hhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCC
Confidence 11112345799999999999987 45579999999999999999999999999999999999999999999999988888
Q ss_pred eeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchh
Q psy10684 127 IFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 127 ~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
.+|+|++..+||+||||.+|+|+|++|..|||+.+.||.+|++|+||++.| +++++.++..++..+..+
T Consensus 799 ~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldl 874 (901)
T KOG4439|consen 799 ARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDL 874 (901)
T ss_pred ceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 688999988887655444
No 11
>KOG0391|consensus
Probab=99.95 E-value=9.8e-28 Score=228.90 Aligned_cols=137 Identities=46% Similarity=0.790 Sum_probs=130.7
Q ss_pred cccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 52 HLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 52 ~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.+-++++|+..|.-+|..+..+|++||||+|++.|+|.|+.+|..+|+.|++++|.++.++|+.++++|| .+..+.|++
T Consensus 1254 LiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFN-aD~RIfcfI 1332 (1958)
T KOG0391|consen 1254 LIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFN-ADRRIFCFI 1332 (1958)
T ss_pred eeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhc-CCCceEEEE
Confidence 3556899999999999999999999999999999999999999999999999999999999999999999 889999999
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhc
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYR 189 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~ 189 (288)
+||.+|+.|+||++|++||+||.+|||.++.||-+|+|||||+++| +.+|++++.+..
T Consensus 1333 LSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1333 LSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred EeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999997 578888887665
No 12
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.94 E-value=4.3e-26 Score=227.72 Aligned_cols=178 Identities=40% Similarity=0.636 Sum_probs=154.6
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCC-CCCCC------------CCCCccccccC-chHHHHHHHH-HHHHhCCC--eEEE
Q psy10684 17 EKMRLQNILMQLRKCSNHPYLFDGA-EPGPP------------YTTDEHLVFNS-GKMVVLDKLL-PKLKAQES--RVLI 79 (288)
Q Consensus 17 ~~~~~~~~l~~Lrq~~~hP~l~~~~-~~~~~------------~~~~~~~~~~s-~K~~~l~~ll-~~~~~~~~--kviI 79 (288)
...++++.+++||++|+||.++... ..... .......+..| +|+..+.+++ ..+..++. |++|
T Consensus 637 ~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvli 716 (866)
T COG0553 637 SELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLI 716 (866)
T ss_pred hhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEE
Confidence 3778999999999999999999765 22111 11122234567 8999999999 78888888 9999
Q ss_pred EecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcc
Q psy10684 80 FSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQ 159 (288)
Q Consensus 80 Fs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~ 159 (288)
|+|++.++++++..|...++.++.++|+++.++|+..++.|+ .+++..|+++++++||.|+||+.|++||+||+||||+
T Consensus 717 fsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~-~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~ 795 (866)
T COG0553 717 FSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFN-ADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPA 795 (866)
T ss_pred EeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhh-cCCCCceEEEEecccccceeecccceEEEeccccChH
Confidence 999999999999999999999999999999999999999999 4477899999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchh
Q psy10684 160 MDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 160 ~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
.+.||++|+||+||+++| ++++++++.+.+..+..+
T Consensus 796 ~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l 838 (866)
T COG0553 796 VELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQEL 838 (866)
T ss_pred HHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHH
Confidence 999999999999999997 488888888777665444
No 13
>KOG0388|consensus
Probab=99.93 E-value=2.2e-26 Score=211.28 Aligned_cols=141 Identities=49% Similarity=0.864 Sum_probs=131.9
Q ss_pred ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 53 LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 53 ~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
++.+|+|+..|.++|..+..++++|++|.|++.|+++++.+|..+++++.+++|+....+|..++..|+ .+.+.|||+
T Consensus 1023 FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ--~sdiFvFLL 1100 (1185)
T KOG0388|consen 1023 FITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQ--ASDIFVFLL 1100 (1185)
T ss_pred hhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhcc--CCceEEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999999998 389999999
Q ss_pred ecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchh
Q psy10684 133 STRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 133 s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
||.+||.|+||+.|++||+||.+|||....||++|+||.||++.| .++|++++.+....+..+
T Consensus 1101 STRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~v 1170 (1185)
T KOG0388|consen 1101 STRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEV 1170 (1185)
T ss_pred ecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999986 488888887776655554
No 14
>KOG0385|consensus
Probab=99.91 E-value=7e-25 Score=203.22 Aligned_cols=178 Identities=34% Similarity=0.560 Sum_probs=134.8
Q ss_pred CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecC
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS 154 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~ 154 (288)
.-++||+...++.......+-...++...=.|.+....-+.++-+.+ .+|+|-++|+-
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLR----------------------KccnHPYLF~g 453 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLR----------------------KCCNHPYLFDG 453 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHH----------------------HhcCCccccCC
Confidence 45889999999887777776666665444334333233333444443 24566666653
Q ss_pred -----CCCcchhhhhhHHHHHHhhhcchHHHHHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCcccc
Q psy10684 155 -----DWNPQMDLQAMVREAKILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHE 226 (288)
Q Consensus 155 -----~wnp~~~~Qa~~R~~R~Gq~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~ 226 (288)
|+.+. .| =+.+.|.. ..++..+.++.+..++++++++++.+.++.++ .+++.||++||+++.+
T Consensus 454 ~ePg~pyttd--eh------Lv~nSGKm-~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~e 524 (971)
T KOG0385|consen 454 AEPGPPYTTD--EH------LVTNSGKM-LVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHE 524 (971)
T ss_pred CCCCCCCCcc--hH------HHhcCcce-ehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcH
Confidence 22221 12 12222222 12344578889999999999999999999986 5799999999999999
Q ss_pred chhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 227 DRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 227 ~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+|..+|+.|+.+.+..+|||+|++|||+|+||++|+.||+||++|||.++.||+|||
T Consensus 525 eR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRa 581 (971)
T KOG0385|consen 525 EREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRA 581 (971)
T ss_pred HHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHH
Confidence 999999999977778999999999999999999999999999999999999999999
No 15
>KOG0388|consensus
Probab=99.90 E-value=8.5e-25 Score=200.99 Aligned_cols=142 Identities=38% Similarity=0.598 Sum_probs=115.3
Q ss_pred EEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchHHHHHHHhhhhccccchhhhhhccCCCcccccc
Q psy10684 131 MLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKGKNYTEE 210 (288)
Q Consensus 131 l~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 210 (288)
|++..+-.-|+++.. ...|.|...+.--+.+- +--.+. -..+++.+.++++..|+++...+++.+.++.|+
T Consensus 992 LI~~ead~PeId~E~------~~~pLn~~i~~Ppm~~F--itdSgK-L~~LDeLL~kLkaegHRvL~yfQMTkM~dl~Ed 1062 (1185)
T KOG0388|consen 992 LISNEADLPEIDLEN------RHIPLNTTIYVPPMNTF--ITDSGK-LVVLDELLPKLKAEGHRVLMYFQMTKMIDLIED 1062 (1185)
T ss_pred eeecccCCCCCCccc------cCcccccceecCcHHhh--hccccc-eeeHHHHHHHhhcCCceEEehhHHHHHHHHHHH
Confidence 667777777888765 22333333332223332 111111 134677889999999999999999999999997
Q ss_pred ---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 ---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++|.|.++||+....+|..++.+|| . ++++|||+|++|||+|+|||+|+.||+||++|||..+.||||||
T Consensus 1063 Yl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ-~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRA 1136 (1185)
T KOG0388|consen 1063 YLVYRGYTYLRLDGSSKASDRRDVVRDWQ-A-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRA 1136 (1185)
T ss_pred HHHhhccceEEecCcchhhHHHHHHhhcc-C-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHH
Confidence 46899999999999999999999999 4 99999999999999999999999999999999999999999999
No 16
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.89 E-value=1.6e-23 Score=205.80 Aligned_cols=131 Identities=20% Similarity=0.249 Sum_probs=113.6
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHH-hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYC-YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l-~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
..++|+..|.++++.. .++|+||||++..+++.|...| ...|++++.+||+++..+|.++++.|+++++++.| |++
T Consensus 476 ~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~V-LIs 552 (956)
T PRK04914 476 NFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQV-LLC 552 (956)
T ss_pred ccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccE-EEe
Confidence 3467999999988763 3789999999999999999999 56799999999999999999999999954445666 678
Q ss_pred cccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhh
Q psy10684 134 TRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRY 188 (288)
Q Consensus 134 ~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~ 188 (288)
|++|++|+|++.+++||+||+||||..+.||+||+||+||+++| +.++++.+.++
T Consensus 553 TdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~ 614 (956)
T PRK04914 553 SEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRW 614 (956)
T ss_pred chhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999886 34455555443
No 17
>KOG1001|consensus
Probab=99.89 E-value=2.4e-24 Score=204.69 Aligned_cols=140 Identities=26% Similarity=0.460 Sum_probs=126.3
Q ss_pred CchHHHHHHHHHHHHhCCC-eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 57 SGKMVVLDKLLPKLKAQES-RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~-kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
|.|+..+.+.|........ |+||||||+.+++.++..|...++.+.+++|.++...|.+.+..|. .++.++|+++|.+
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~-~~~~~~vll~Slk 599 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFP-CDPLVTALLMSLK 599 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccc-cCccHHHHHHHHH
Confidence 7788888877774332233 9999999999999999999999999999999999999999999999 8899999999999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchhhh
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQLRI 197 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~~~ 197 (288)
+|+.||||+.|+||+.+||||||..++||++|+||+||+++| ++++++++.++++.+.....
T Consensus 600 ag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~ 668 (674)
T KOG1001|consen 600 AGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNA 668 (674)
T ss_pred HhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999986 58899999888877666543
No 18
>KOG0387|consensus
Probab=99.88 E-value=7.3e-23 Score=190.64 Aligned_cols=179 Identities=27% Similarity=0.424 Sum_probs=128.4
Q ss_pred CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccc--ccceeEEe
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA--TADVVVLY 152 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~--~a~~vi~~ 152 (288)
+-.|+||+.+.....+...+-. -..+..-|+ +..++ ..|+++- -|+|--++
T Consensus 457 ~E~VlfC~LT~~QR~~Y~~fl~----------------s~~v~~i~n-g~~~~----------l~Gi~iLrkICnHPdll 509 (923)
T KOG0387|consen 457 EEIVLFCRLTKLQRRLYQRFLN----------------SSEVNKILN-GKRNC----------LSGIDILRKICNHPDLL 509 (923)
T ss_pred cceEEEEeccHHHHHHHHHHhh----------------hHHHHHHHc-CCccc----------eechHHHHhhcCCcccc
Confidence 4578999999887777665421 112334444 33332 1266654 56766666
Q ss_pred cCCCCcchhhhhhHHHHHHhhhcchHHHHHHHhhhhccccchhhhhhccCCCcccccc----cchhhhcccCCCccccch
Q psy10684 153 DSDWNPQMDLQAMVREAKILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKGKNYTEE----EDRYLYCRLDGQTAHEDR 228 (288)
Q Consensus 153 d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~gi~~~~l~G~~~~~~R 228 (288)
+..- ....|-.+-.+-.-..+.+ ..+...+..+....++++.+++...+.++.|. ..||.|+++||.++...|
T Consensus 510 ~~~~--~~~~~~~D~~g~~k~sGKm-~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R 586 (923)
T KOG0387|consen 510 DRRD--EDEKQGPDYEGDPKRSGKM-KVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALR 586 (923)
T ss_pred cCcc--cccccCCCcCCChhhcchH-HHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchh
Confidence 6531 1111111111111111122 23455577788888899999888888887774 469999999999999999
Q ss_pred hHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 229 QRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 229 ~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
+..|++|| ++..++|||+++++||+|||||+||+||+|||+|||..+.||-+||+
T Consensus 587 ~~lVd~Fn-e~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRaw 641 (923)
T KOG0387|consen 587 QKLVDRFN-EDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAW 641 (923)
T ss_pred hHHHHhhc-CCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999999999993
No 19
>KOG0384|consensus
Probab=99.88 E-value=1.1e-23 Score=203.31 Aligned_cols=108 Identities=47% Similarity=0.688 Sum_probs=101.3
Q ss_pred HHHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCC
Q psy10684 180 ALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGI 256 (288)
Q Consensus 180 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~gl 256 (288)
.++..+.++++.+|++++++++..+.++.++ .++|.|.+|||+++.+-|+++||+|+.++++-||||+|++|||+|+
T Consensus 687 LLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGI 766 (1373)
T KOG0384|consen 687 LLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGI 766 (1373)
T ss_pred eHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccc
Confidence 3566678889999999999999999998887 5699999999999999999999999988999999999999999999
Q ss_pred CccccceEEEeCCCCChhhhhhhhhhh--------hhhc
Q psy10684 257 NLATADVVVLYDSDWNPQMDLQAMVRT--------VIAY 287 (288)
Q Consensus 257 nl~~a~~v~~~d~~wnp~~~~Qa~~Ra--------~~~~ 287 (288)
||++|++||++|++|||.++.||++|| |+||
T Consensus 767 NLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVY 805 (1373)
T KOG0384|consen 767 NLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVY 805 (1373)
T ss_pred cccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEE
Confidence 999999999999999999999999999 7777
No 20
>KOG1015|consensus
Probab=99.85 E-value=4.6e-21 Score=180.99 Aligned_cols=135 Identities=35% Similarity=0.612 Sum_probs=119.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh----------------------cCcEEEEeeCCCCHHH
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW----------------------RGFKYCRLDGQTAHED 112 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~----------------------~~~~~~~~~G~~~~~~ 112 (288)
..|+|+-.|+++|....+-|+|+|||||+...+|.|+.+|.. .|..|.+++|++...+
T Consensus 1123 ~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~ 1202 (1567)
T KOG1015|consen 1123 EHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQS 1202 (1567)
T ss_pred hcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHH
Confidence 379999999999999888899999999999999999998843 2578999999999999
Q ss_pred HHHHHHhhcCCCC-CeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHH
Q psy10684 113 RQRQINDFNMEGS-DIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAK 184 (288)
Q Consensus 113 R~~~i~~F~~~~~-~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~ 184 (288)
|+...++||++.. ..+++|+||+||+.|+||.+||+||+||..|||+...|+|=|++|+||+++| ..+++++
T Consensus 1203 R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeK 1282 (1567)
T KOG1015|consen 1203 RKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEK 1282 (1567)
T ss_pred HHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHH
Confidence 9999999994322 3578999999999999999999999999999999999999999999999997 2556666
Q ss_pred hhhhc
Q psy10684 185 MSRYR 189 (288)
Q Consensus 185 ~~~~~ 189 (288)
+.+.+
T Consensus 1283 IYkRQ 1287 (1567)
T KOG1015|consen 1283 IYKRQ 1287 (1567)
T ss_pred HHHHH
Confidence 55443
No 21
>KOG1000|consensus
Probab=99.85 E-value=4.2e-21 Score=170.91 Aligned_cols=144 Identities=24% Similarity=0.331 Sum_probs=124.7
Q ss_pred cCchHHHHHHHHHH----HHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPK----LKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~----~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.-.|+.++.+.|.. ....+.|.+||+++..++|.|+..+..+++..++++|+++..+|+.+.+.|+ .+.+++|-+
T Consensus 470 giaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ-~seev~VAv 548 (689)
T KOG1000|consen 470 GIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQ-TSEEVRVAV 548 (689)
T ss_pred cccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhc-cccceEEEE
Confidence 45677788877766 3345789999999999999999999999999999999999999999999999 788999999
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchhhhhhc
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQLRIAYG 200 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~~~~~~ 200 (288)
++..+|+.||+++.|+.|++.+.+|||+...||.+|+||+||+.+| |.++++.+-.....+-.++.+.+
T Consensus 549 lsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~g 624 (689)
T KOG1000|consen 549 LSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVG 624 (689)
T ss_pred EEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999987 56777666555444444444433
No 22
>KOG0389|consensus
Probab=99.83 E-value=1.6e-21 Score=181.56 Aligned_cols=104 Identities=38% Similarity=0.560 Sum_probs=97.7
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccC
Q psy10684 179 KALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG 255 (288)
Q Consensus 179 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~g 255 (288)
..+.+.+.+++..+++++++++++.+.++.|. -.++.|+|+||+|...+|+.+|++|+ .+.+++|||+|++|||+|
T Consensus 764 r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn-~d~difVFLLSTKAGG~G 842 (941)
T KOG0389|consen 764 RKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFN-TDKDIFVFLLSTKAGGFG 842 (941)
T ss_pred hHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhc-cCCceEEEEEeeccCcce
Confidence 45566678888999999999999999998884 56899999999999999999999999 999999999999999999
Q ss_pred CCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 256 INLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 256 lnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+|||+||+||++|-++||..+.||.|||
T Consensus 843 INLt~An~VIihD~dFNP~dD~QAEDRc 870 (941)
T KOG0389|consen 843 INLTCANTVIIHDIDFNPYDDKQAEDRC 870 (941)
T ss_pred ecccccceEEEeecCCCCcccchhHHHH
Confidence 9999999999999999999999999999
No 23
>KOG1002|consensus
Probab=99.83 E-value=2.9e-21 Score=172.01 Aligned_cols=93 Identities=25% Similarity=0.372 Sum_probs=85.3
Q ss_pred cccchhhhhhccCCCccccc---ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE
Q psy10684 190 APFHQLRIAYGANKGKNYTE---EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 266 (288)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~e---~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~ 266 (288)
..--+.+++++++++.++.+ .+.|+..+.+.|+|++.+|+..|+.|. +++++.|||+|++|||+.||||.||+|++
T Consensus 636 d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~-nd~~c~vfLvSLkAGGVALNLteASqVFm 714 (791)
T KOG1002|consen 636 DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFK-NDIDCRVFLVSLKAGGVALNLTEASQVFM 714 (791)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhc-cCCCeEEEEEEeccCceEeeechhceeEe
Confidence 34445678888888888776 567899999999999999999999999 99999999999999999999999999999
Q ss_pred eCCCCChhhhhhhhhhh
Q psy10684 267 YDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 267 ~d~~wnp~~~~Qa~~Ra 283 (288)
+||||||++|.||.||.
T Consensus 715 mDPWWNpaVe~Qa~DRi 731 (791)
T KOG1002|consen 715 MDPWWNPAVEWQAQDRI 731 (791)
T ss_pred ecccccHHHHhhhhhhH
Confidence 99999999999999997
No 24
>KOG0390|consensus
Probab=99.82 E-value=4.5e-21 Score=182.07 Aligned_cols=73 Identities=45% Similarity=0.783 Sum_probs=67.9
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
.|+.++++||+|+..+|+++|+.||...+.-+|||+|++|||+||||++|||+|++||+|||+++.|||+||+
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~ 690 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAW 690 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhc
Confidence 4899999999999999999999999444445999999999999999999999999999999999999999993
No 25
>KOG0333|consensus
Probab=99.80 E-value=1.2e-19 Score=162.60 Aligned_cols=146 Identities=22% Similarity=0.326 Sum_probs=126.6
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCcc---ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 28 LRKCSNHPYLFDGAEPGPPYTTDEH---LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 28 Lrq~~~hP~l~~~~~~~~~~~~~~~---~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
+|+....|..+.......+.+..+. ++..+.|...|+++|+.. ....+|||.+....+|+|++.|.+.|+.++.+
T Consensus 470 ar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tl 547 (673)
T KOG0333|consen 470 ARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTL 547 (673)
T ss_pred HHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEe
Confidence 5666677877776555444444443 456889999999999863 46799999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchH
Q psy10684 105 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178 (288)
Q Consensus 105 ~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~ 178 (288)
||+.++++|+.++..|+.+..++ |++|+++|+|+|++++++|||||..-+-..|.|||||++|.|+.|++.
T Consensus 548 Hg~k~qeQRe~aL~~fr~~t~dI---lVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai 618 (673)
T KOG0333|consen 548 HGGKSQEQRENALADFREGTGDI---LVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI 618 (673)
T ss_pred eCCccHHHHHHHHHHHHhcCCCE---EEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE
Confidence 99999999999999999555554 899999999999999999999999999999999999999999999863
No 26
>KOG0331|consensus
Probab=99.79 E-value=3.2e-19 Score=163.07 Aligned_cols=119 Identities=22% Similarity=0.388 Sum_probs=108.4
Q ss_pred cCchHHHHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 56 NSGKMVVLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..+|...|.++|.... ..+.|+||||+....++.|+..|+..++++..|||..++.+|..+++.|.+++. .| |++|
T Consensus 322 ~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~--~v-LVAT 398 (519)
T KOG0331|consen 322 ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKS--PV-LVAT 398 (519)
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCc--ce-EEEc
Confidence 6788999999999876 345799999999999999999999999999999999999999999999984433 33 9999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|||+.++++||+||+|-|...|.||+||++|.|+++..
T Consensus 399 dVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 399 DVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred ccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 9999999999999999999999999999999999999888764
No 27
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.78 E-value=6.3e-20 Score=181.31 Aligned_cols=102 Identities=49% Similarity=0.808 Sum_probs=90.2
Q ss_pred HHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCc
Q psy10684 182 EAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINL 258 (288)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl 258 (288)
...+.++....+++++++++..+.++.++ ..|+.+++++|+++.++|++++++|+..+++.+|+|+|++|||+||||
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 33455666778899999998888777775 468999999999999999999999994456678999999999999999
Q ss_pred cccceEEEeCCCCChhhhhhhhhhh
Q psy10684 259 ATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 259 ~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++||+||+||+||||+.+.||+|||
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRa 581 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRA 581 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHh
Confidence 9999999999999999999999999
No 28
>KOG0392|consensus
Probab=99.77 E-value=6.9e-20 Score=177.01 Aligned_cols=97 Identities=40% Similarity=0.634 Sum_probs=88.8
Q ss_pred cccchhhhhhccCCCcccccccc------hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccce
Q psy10684 190 APFHQLRIAYGANKGKNYTEEED------RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV 263 (288)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~e~~~------gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~ 263 (288)
...|+++++-+...+.++.|+.. .+.|.++||++++.+|++++++|| ++|.+.|+|+++..||+|||||+|++
T Consensus 1338 vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN-~DptIDvLlLTThVGGLGLNLTGADT 1416 (1549)
T KOG0392|consen 1338 VSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFN-EDPTIDVLLLTTHVGGLGLNLTGADT 1416 (1549)
T ss_pred hccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhc-CCCceeEEEEeeeccccccccCCCce
Confidence 36788888888888888887632 566889999999999999999999 99999999999999999999999999
Q ss_pred EEEeCCCCChhhhhhhhhhh--------hhhc
Q psy10684 264 VVLYDSDWNPQMDLQAMVRT--------VIAY 287 (288)
Q Consensus 264 v~~~d~~wnp~~~~Qa~~Ra--------~~~~ 287 (288)
||+++.+|||..+.|||||| |+||
T Consensus 1417 VVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1417 VVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred EEEEecCCCchhhHHHHHHHHhhcCceeeeee
Confidence 99999999999999999999 7887
No 29
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.76 E-value=3.5e-18 Score=131.72 Aligned_cols=117 Identities=30% Similarity=0.485 Sum_probs=106.1
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|...+..++......+.++|||+++...++.+...|...++++..+||+++..+|...++.|+.+. . .+|+++.+.
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~-~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--I-VVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--C-cEEEEcChh
Confidence 5999999998876656789999999999999999999988999999999999999999999998433 3 347899999
Q ss_pred cccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||+++++|++..+.|++||++|.|+++.+
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~ 128 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTA 128 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceE
Confidence 9999999999999999999999999999999999987654
No 30
>KOG0391|consensus
Probab=99.75 E-value=4.9e-19 Score=170.10 Aligned_cols=104 Identities=45% Similarity=0.695 Sum_probs=96.8
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccC
Q psy10684 179 KALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG 255 (288)
Q Consensus 179 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~g 255 (288)
.++--.+.+++..+|+++++.++..+.++.|. -.|+.|.+|||.+..++|+.++++|| .+..+++|++|++.||+|
T Consensus 1263 QtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFN-aD~RIfcfILSTrSggvG 1341 (1958)
T KOG0391|consen 1263 QTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFN-ADRRIFCFILSTRSGGVG 1341 (1958)
T ss_pred HHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhc-CCCceEEEEEeccCCccc
Confidence 34445577888999999999999999998886 46999999999999999999999999 899999999999999999
Q ss_pred CCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 256 INLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 256 lnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+|||+|+.||+||.+|||..+.||-||+
T Consensus 1342 iNLtgADTVvFYDsDwNPtMDaQAQDrC 1369 (1958)
T KOG0391|consen 1342 INLTGADTVVFYDSDWNPTMDAQAQDRC 1369 (1958)
T ss_pred cccccCceEEEecCCCCchhhhHHHHHH
Confidence 9999999999999999999999999998
No 31
>KOG0330|consensus
Probab=99.74 E-value=3.2e-18 Score=148.68 Aligned_cols=117 Identities=24% Similarity=0.324 Sum_probs=105.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.--|-.+|+.+|++. .+..+||||+.....+++.-.|+..|+.+..+||.|+++.|..+++.|+.+..+ +|++|+
T Consensus 284 ~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~---iLv~TD 358 (476)
T KOG0330|consen 284 GKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS---ILVCTD 358 (476)
T ss_pred ccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc---EEEecc
Confidence 345667888888863 457999999999999999999999999999999999999999999999944443 399999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+|+||||++.+++|||||.|-+...|.||+||++|.|+.+.+
T Consensus 359 VaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ 400 (476)
T KOG0330|consen 359 VASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKA 400 (476)
T ss_pred hhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcce
Confidence 999999999999999999999999999999999999998875
No 32
>KOG0328|consensus
Probab=99.74 E-value=4.4e-18 Score=142.28 Aligned_cols=118 Identities=21% Similarity=0.344 Sum_probs=105.2
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
+.-|.+.|.++-..+.- ..+||||+.....|+|.+.++..++.+..+||.|++++|.+++..|++.. .+| |++|+
T Consensus 250 EewKfdtLcdLYd~LtI--tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~--Srv-LitTD 324 (400)
T KOG0328|consen 250 EEWKFDTLCDLYDTLTI--TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGK--SRV-LITTD 324 (400)
T ss_pred hhhhHhHHHHHhhhheh--heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCC--ceE-EEEec
Confidence 34477777777665433 48999999999999999999999999999999999999999999998544 444 89999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchH
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~ 178 (288)
+=++|++.+.++.|||||.|-|+..|.|||||.||.|++|.+-
T Consensus 325 VwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvai 367 (400)
T KOG0328|consen 325 VWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 367 (400)
T ss_pred hhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEE
Confidence 9999999999999999999999999999999999999999753
No 33
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1e-17 Score=157.47 Aligned_cols=115 Identities=26% Similarity=0.488 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|+..|..+++.. ...++||||+....++.|...|...|+++..+||++++++|.+.++.|+ ++...| |++|+++
T Consensus 259 ~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~--~g~~~v-LVaTDva 333 (513)
T COG0513 259 EKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFK--DGELRV-LVATDVA 333 (513)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHH--cCCCCE-EEEechh
Confidence 3888888888753 3348999999999999999999999999999999999999999999998 444455 8999999
Q ss_pred cccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|||+...++|||||.|.++..|.||+||++|.|.+|..
T Consensus 334 aRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~a 373 (513)
T COG0513 334 ARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVA 373 (513)
T ss_pred hccCCccccceeEEccCCCCHHHheeccCccccCCCCCeE
Confidence 9999999999999999999999999999999999988864
No 34
>PTZ00110 helicase; Provisional
Probab=99.72 E-value=8.5e-18 Score=159.32 Aligned_cols=120 Identities=19% Similarity=0.287 Sum_probs=109.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
....|...|.+++..+...+.++||||+....++.|...|...++++..+||++++++|..+++.|++ +.+.| |++|
T Consensus 358 ~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~--G~~~I-LVaT 434 (545)
T PTZ00110 358 EEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT--GKSPI-MIAT 434 (545)
T ss_pred echhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc--CCCcE-EEEc
Confidence 35678888999988776677899999999999999999999999999999999999999999999984 44444 8999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|+|++.+++||+||+|+++..|.||+||++|.|+++.+
T Consensus 435 dv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a 477 (545)
T PTZ00110 435 DVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS 477 (545)
T ss_pred chhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE
Confidence 9999999999999999999999999999999999999998765
No 35
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.69 E-value=5.4e-17 Score=149.94 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=103.9
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|...+..++.. ....++||||+....++.+...|...|+++..+||++++++|..+++.|+. +++.| |++|++
T Consensus 240 ~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~--g~~~v-LVaTdv 314 (423)
T PRK04837 240 EEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR--GDLDI-LVATDV 314 (423)
T ss_pred HHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc--CCCcE-EEEech
Confidence 4566777776654 346799999999999999999999999999999999999999999999984 44555 899999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++|+|++.+++||+||+|+++..|.|++||++|.|+.+.+
T Consensus 315 ~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a 355 (423)
T PRK04837 315 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS 355 (423)
T ss_pred hhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE
Confidence 99999999999999999999999999999999999999875
No 36
>KOG4439|consensus
Probab=99.68 E-value=1.9e-17 Score=153.03 Aligned_cols=98 Identities=29% Similarity=0.451 Sum_probs=89.1
Q ss_pred hccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceE
Q psy10684 188 YRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV 264 (288)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v 264 (288)
+....+++++.+++++..+.... ..|+.|..++|.+.+.+|+..+++|+.+....+|+|+|+.|||+||||++|||+
T Consensus 742 ~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHl 821 (901)
T KOG4439|consen 742 LTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHL 821 (901)
T ss_pred hhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceE
Confidence 56677788888888887776664 568999999999999999999999997778899999999999999999999999
Q ss_pred EEeCCCCChhhhhhhhhhhhh
Q psy10684 265 VLYDSDWNPQMDLQAMVRTVI 285 (288)
Q Consensus 265 ~~~d~~wnp~~~~Qa~~Ra~~ 285 (288)
|++|.+|||+.|.||.||.|.
T Consensus 822 ilvDlHWNPaLEqQAcDRIYR 842 (901)
T KOG4439|consen 822 ILVDLHWNPALEQQACDRIYR 842 (901)
T ss_pred EEEecccCHHHHHHHHHHHHH
Confidence 999999999999999999964
No 37
>KOG0386|consensus
Probab=99.67 E-value=2.5e-17 Score=157.20 Aligned_cols=105 Identities=44% Similarity=0.686 Sum_probs=98.3
Q ss_pred HHHHHHhhhhccccchhhhhhccCCCccccccc---chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccC
Q psy10684 179 KALEAKMSRYRAPFHQLRIAYGANKGKNYTEEE---DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG 255 (288)
Q Consensus 179 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~g 255 (288)
+.++..+.++++..|+++.+.+++...+..|+. .++.|.++||.+..++|-.+++.||+.++++++||+|++|||+|
T Consensus 713 ELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstragglg 792 (1157)
T KOG0386|consen 713 ELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLG 792 (1157)
T ss_pred HHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccc
Confidence 455666788899999999999999999999874 47889999999999999999999998889999999999999999
Q ss_pred CCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 256 INLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 256 lnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|||+.|+.||++|++|||..+.||.|||
T Consensus 793 lNlQtadtviifdsdwnp~~d~qaqdra 820 (1157)
T KOG0386|consen 793 LNLQTADTVIIFDSDWNPHQDLQAQDRA 820 (1157)
T ss_pred cchhhcceEEEecCCCCchhHHHHHHHH
Confidence 9999999999999999999999999999
No 38
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.67 E-value=3.1e-16 Score=145.39 Aligned_cols=115 Identities=19% Similarity=0.369 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|...|..+++. ....++||||+....++.+...|...++++..+||++++.+|..+++.|++ +.+.| |++|+++
T Consensus 231 ~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~--G~~~v-LVaTd~~ 305 (434)
T PRK11192 231 HKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD--GRVNV-LVATDVA 305 (434)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC--CCCcE-EEEcccc
Confidence 455555555542 245799999999999999999999999999999999999999999999984 45555 8899999
Q ss_pred cccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||+||+|+++..|.|++||++|.|..+.+
T Consensus 306 ~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~a 345 (434)
T PRK11192 306 ARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTA 345 (434)
T ss_pred ccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceE
Confidence 9999999999999999999999999999999999988753
No 39
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.67 E-value=4.6e-17 Score=114.48 Aligned_cols=78 Identities=27% Similarity=0.492 Sum_probs=71.5
Q ss_pred HHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 92 DYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 92 ~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
+.|+..++++..+||+++..+|..+++.|++... . +|++|+++++|+|++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~--~-vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI--R-VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS--S-EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc--e-EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3678899999999999999999999999994444 3 488899999999999999999999999999999999999998
Q ss_pred h
Q psy10684 172 L 172 (288)
Q Consensus 172 G 172 (288)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 40
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.66 E-value=6.8e-16 Score=144.60 Aligned_cols=117 Identities=19% Similarity=0.312 Sum_probs=104.1
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+.|...+..++.. ....++||||+....++.+...|...++.+..+||.++.++|.++++.|++ +.+.+ |++|+
T Consensus 319 ~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~--G~~~v-LvaT~ 393 (475)
T PRK01297 319 GSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE--GKIRV-LVATD 393 (475)
T ss_pred chhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC--CCCcE-EEEcc
Confidence 45677777776654 335699999999999999999999999999999999999999999999983 44555 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|+.++++||+|++|+++..|.|++||++|.|+.+.+
T Consensus 394 ~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~ 435 (475)
T PRK01297 394 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVS 435 (475)
T ss_pred ccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE
Confidence 999999999999999999999999999999999999998765
No 41
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.66 E-value=5.5e-16 Score=144.74 Aligned_cols=117 Identities=17% Similarity=0.343 Sum_probs=104.4
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+..+..++.. ....++||||+....++.+...|...++.+..+||++++++|+.+++.|+. +..+| |++|+
T Consensus 226 ~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~--g~~~v-LVaTd 300 (460)
T PRK11776 226 PDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN--RSCSV-LVATD 300 (460)
T ss_pred cHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCcE-EEEec
Confidence 34477778777764 345789999999999999999999999999999999999999999999983 44555 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||+||.|.++..|.||+||++|.|+.+.+
T Consensus 301 v~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~a 342 (460)
T PRK11776 301 VAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLA 342 (460)
T ss_pred ccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceE
Confidence 999999999999999999999999999999999999998764
No 42
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.65 E-value=1e-15 Score=145.87 Aligned_cols=116 Identities=18% Similarity=0.354 Sum_probs=103.0
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|+..+..++.. ..+.++||||+....++.|...|...++.+..+||+++..+|.++++.|++ +.+.| |++|++
T Consensus 242 ~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~--G~~~V-LVaTdv 316 (572)
T PRK04537 242 EEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK--GQLEI-LVATDV 316 (572)
T ss_pred HHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc--CCCeE-EEEehh
Confidence 4466666666643 346799999999999999999999999999999999999999999999983 44555 899999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++|||+..+++||+||.|+++..|.|++||++|.|..+..
T Consensus 317 ~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a 357 (572)
T PRK04537 317 AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA 357 (572)
T ss_pred hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE
Confidence 99999999999999999999999999999999999998764
No 43
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.64 E-value=3.2e-16 Score=147.97 Aligned_cols=119 Identities=16% Similarity=0.283 Sum_probs=104.4
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh-cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW-RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~-~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
...|...+.+++........++|||++....++.+...|.. .++.+..+||++++++|..+++.|+. +.++| |++|
T Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~--G~~~I-LVaT 425 (518)
T PLN00206 349 TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV--GEVPV-IVAT 425 (518)
T ss_pred chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC--CCCCE-EEEe
Confidence 44567777777775444456899999999999999999975 59999999999999999999999984 44455 8999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|+|++.+++||+||+|.++..|.|++||++|.|..+.+
T Consensus 426 dvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~a 468 (518)
T PLN00206 426 GVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTA 468 (518)
T ss_pred cHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEE
Confidence 9999999999999999999999999999999999999988765
No 44
>KOG0336|consensus
Probab=99.64 E-value=5.9e-17 Score=141.77 Aligned_cols=119 Identities=21% Similarity=0.355 Sum_probs=108.5
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
.++.|+..+..+++.. ...+|+|||+....+.|.|...|.-.||..-.+||.-.+.+|+.+++.|+ .+.+++ |+.|
T Consensus 447 ~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~k--sG~vrI-LvaT 522 (629)
T KOG0336|consen 447 TDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFK--SGEVRI-LVAT 522 (629)
T ss_pred ccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhh--cCceEE-EEEe
Confidence 4678888888887764 44689999999999999999999999999999999999999999999998 456666 8999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+.+++||++...+||+|||+|-|-..|.||+||++|.|++++.
T Consensus 523 DlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s 565 (629)
T KOG0336|consen 523 DLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS 565 (629)
T ss_pred chhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce
Confidence 9999999999999999999999999999999999999999875
No 45
>KOG0340|consensus
Probab=99.63 E-value=7.2e-16 Score=132.76 Aligned_cols=118 Identities=21% Similarity=0.293 Sum_probs=108.1
Q ss_pred cCchHHHHHHHHHHHHh-CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 56 NSGKMVVLDKLLPKLKA-QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~-~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
...|-.+|..+|..... +...++||+|.+..+..|...|+..++....+|+.|++++|..++.+|+++ ..++ |++|
T Consensus 235 ~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~--~~~i-liaT 311 (442)
T KOG0340|consen 235 IDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSN--AARI-LIAT 311 (442)
T ss_pred hhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhc--CccE-EEEe
Confidence 55788899999998766 467899999999999999999999999999999999999999999999843 3444 8999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+++++|||++.+.-|+|+|.|-+|..|.||.||+.|.|+.|.
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 999999999999999999999999999999999999999875
No 46
>KOG0383|consensus
Probab=99.63 E-value=2.1e-16 Score=149.19 Aligned_cols=136 Identities=47% Similarity=0.703 Sum_probs=117.5
Q ss_pred ccccchHHhcCCCccchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCC--CccccccCchHHHHHHHHHHHHhCCCeEEE
Q psy10684 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTT--DEHLVFNSGKMVVLDKLLPKLKAQESRVLI 79 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~--~~~~~~~s~K~~~l~~ll~~~~~~~~kviI 79 (288)
++++|+..+..|+ +..++++.+|.||++|+|||+....++...... ...+...|+|+..|..+++.+...+++|+|
T Consensus 559 ~~t~n~~~l~~~~--~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~ 636 (696)
T KOG0383|consen 559 ILTRNWQGLLAGV--HQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLI 636 (696)
T ss_pred HHcCChHHHhhcc--hhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHH
Confidence 5788999888744 677799999999999999999987333211110 112456899999999999999999999999
Q ss_pred EecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccc
Q psy10684 80 FSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG 140 (288)
Q Consensus 80 Fs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~G 140 (288)
|+|+..++|+|+.++...+ .+.+++|..+...|+.++++|+.+.+.-.++|+||.+||.|
T Consensus 637 ~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 637 FSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 9999999999999999999 99999999999999999999998888889999999999987
No 47
>PRK13766 Hef nuclease; Provisional
Probab=99.63 E-value=1.3e-15 Score=150.70 Aligned_cols=116 Identities=18% Similarity=0.336 Sum_probs=104.3
Q ss_pred ccCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCC--------CCHHHHHHHHHhhcCCC
Q psy10684 55 FNSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQ--------TAHEDRQRQINDFNMEG 124 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~--------~~~~~R~~~i~~F~~~~ 124 (288)
..++|+..|.++|+++. ..+.|+||||++..+++.|...|...|+++..++|. +++.+|.+++++|+.+
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g- 422 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG- 422 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcC-
Confidence 35789999999999866 457899999999999999999999999999999997 8889999999999843
Q ss_pred CCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhh
Q psy10684 125 SDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 125 ~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq 173 (288)
...+ |++|+++++|+|++.+++||+||++||+..+.|++||++|.|+
T Consensus 423 -~~~v-LvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~ 469 (773)
T PRK13766 423 -EFNV-LVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE 469 (773)
T ss_pred -CCCE-EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC
Confidence 4555 7899999999999999999999999999999999998888765
No 48
>KOG1016|consensus
Probab=99.62 E-value=3.3e-16 Score=146.03 Aligned_cols=121 Identities=38% Similarity=0.590 Sum_probs=107.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC------------------cEEEEeeCCCCHHHHHHHH
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG------------------FKYCRLDGQTAHEDRQRQI 117 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~------------------~~~~~~~G~~~~~~R~~~i 117 (288)
.++|+-.+++++++-..-++|+|||||....++.|++.|.++. ..+.+++|.++..+|++++
T Consensus 701 n~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLi 780 (1387)
T KOG1016|consen 701 NGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLI 780 (1387)
T ss_pred CCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHH
Confidence 4566666667776655668999999999999999999997763 4578999999999999999
Q ss_pred HhhcCCCCCee-EEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 118 NDFNMEGSDIF-IFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 118 ~~F~~~~~~~~-vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+ ..+++. .+++|+++|..|+||..|+++++||..|||....||+.|++|+||+++.
T Consensus 781 nqfN-~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~Kpc 840 (1387)
T KOG1016|consen 781 NQFN-SEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPC 840 (1387)
T ss_pred Hhcc-CCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCce
Confidence 9999 556666 8899999999999999999999999999999999999999999999874
No 49
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.62 E-value=1.1e-15 Score=142.32 Aligned_cols=114 Identities=20% Similarity=0.345 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccc
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 138 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~ 138 (288)
|...+..++.. ....++||||+....++.+...|...++++..+||++++++|.++++.|++ +.++| |++|++++
T Consensus 232 k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~--g~~~i-LVaTdv~~ 306 (456)
T PRK10590 232 KRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS--GDIRV-LVATDIAA 306 (456)
T ss_pred HHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc--CCCcE-EEEccHHh
Confidence 34444444332 234699999999999999999999999999999999999999999999983 45555 88999999
Q ss_pred ccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 139 LGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+|+|++.+++||+||+|.++..|.|++||++|.|+++.+
T Consensus 307 rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~a 345 (456)
T PRK10590 307 RGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEA 345 (456)
T ss_pred cCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeE
Confidence 999999999999999999999999999999999998764
No 50
>KOG0335|consensus
Probab=99.62 E-value=2.5e-16 Score=142.18 Aligned_cols=153 Identities=17% Similarity=0.238 Sum_probs=125.9
Q ss_pred cccCchHHHHHHHHHHHHh---C----CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCC
Q psy10684 54 VFNSGKMVVLDKLLPKLKA---Q----ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSD 126 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~---~----~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~ 126 (288)
+....|...|+++|..... + .++++||+...+.++.++..|...++++..+||..++.+|.+.++.|. ...
T Consensus 310 V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr--~g~ 387 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFR--NGK 387 (482)
T ss_pred ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhh--cCC
Confidence 3467899999999875441 1 248999999999999999999999999999999999999999999998 344
Q ss_pred eeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchHHHHHHHhhhhccccchhhhhhccCCCcc
Q psy10684 127 IFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKGKN 206 (288)
Q Consensus 127 ~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (288)
+.+ |++|.++++|||+..+.|||+||.|-+-..|.|||||++|.|..+.....+.++...+...+.+++...+...+..
T Consensus 388 ~pv-lVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~w 466 (482)
T KOG0335|consen 388 APV-LVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQW 466 (482)
T ss_pred cce-EEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHH
Confidence 444 8999999999999999999999999999999999999999999988765555555555555556655555554444
Q ss_pred ccc
Q psy10684 207 YTE 209 (288)
Q Consensus 207 ~~e 209 (288)
+.+
T Consensus 467 l~~ 469 (482)
T KOG0335|consen 467 LSE 469 (482)
T ss_pred HHh
Confidence 443
No 51
>KOG0332|consensus
Probab=99.62 E-value=1.5e-15 Score=131.54 Aligned_cols=118 Identities=22% Similarity=0.256 Sum_probs=102.2
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..+|.++...+ .-...||||+......+|...+...|..+..+||.+..++|..++++|+. +..+| |++|+
T Consensus 314 ~~~K~~~l~~lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~--g~~kV-LitTn 388 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE--GKEKV-LITTN 388 (477)
T ss_pred hhhHHHHHHHHHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc--CcceE-EEEec
Confidence 456777777754432 12478999999999999999999999999999999999999999999984 44455 89999
Q ss_pred cccccccccccceeEEecCCC------CcchhhhhhHHHHHHhhhcchH
Q psy10684 136 AGGLGINLATADVVVLYDSDW------NPQMDLQAMVREAKILRRGSIK 178 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~w------np~~~~Qa~~R~~R~Gq~~~v~ 178 (288)
+++||+|...++.|||||.|- ++..|.|||||+||.|++|-+-
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~ 437 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAI 437 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEE
Confidence 999999999999999999884 5789999999999999998764
No 52
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.62 E-value=1.6e-16 Score=158.96 Aligned_cols=97 Identities=37% Similarity=0.573 Sum_probs=87.4
Q ss_pred hhhccccc--hhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccc
Q psy10684 186 SRYRAPFH--QLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT 260 (288)
Q Consensus 186 ~~~~~~~~--~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~ 260 (288)
.......+ +++++++...+.++.+. ..++.+++++|+++..+|+..+++|+ .++...|+++|++|||+|+|||+
T Consensus 703 ~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~-~~~~~~v~lls~kagg~glnLt~ 781 (866)
T COG0553 703 DKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFN-ADEEEKVFLLSLKAGGLGLNLTG 781 (866)
T ss_pred HHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhh-cCCCCceEEEEecccccceeecc
Confidence 45556666 89999999988887775 33578999999999999999999999 66789999999999999999999
Q ss_pred cceEEEeCCCCChhhhhhhhhhh
Q psy10684 261 ADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 261 a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|++||++||||||+++.||+|||
T Consensus 782 a~~vi~~d~~wnp~~~~Qa~dRa 804 (866)
T COG0553 782 ADTVILFDPWWNPAVELQAIDRA 804 (866)
T ss_pred cceEEEeccccChHHHHHHHHHH
Confidence 99999999999999999999999
No 53
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.61 E-value=2.8e-15 Score=143.85 Aligned_cols=117 Identities=16% Similarity=0.254 Sum_probs=104.2
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|...|..++.. ....++||||+....++.+...|...|+.+..+||.+++.+|.++++.|++ +.+.| |++|+
T Consensus 229 ~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~--G~~~I-LVATd 303 (629)
T PRK11634 229 GMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD--GRLDI-LIATD 303 (629)
T ss_pred hhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC--CCCCE-EEEcc
Confidence 34677888777764 335689999999999999999999999999999999999999999999984 44444 89999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||+||+|.++..|.|++||++|.|+.+..
T Consensus 304 v~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~a 345 (629)
T PRK11634 304 VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRA 345 (629)
T ss_pred hHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceE
Confidence 999999999999999999999999999999999999987653
No 54
>KOG0326|consensus
Probab=99.57 E-value=1.2e-15 Score=129.77 Aligned_cols=120 Identities=23% Similarity=0.326 Sum_probs=109.5
Q ss_pred ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 53 LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 53 ~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
++.++.|+..|..+..++.- ...||||+++..++.|++.....|+++..+|..|.++.|.++...|. .+.|+. |+
T Consensus 303 fV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr--~G~crn-LV 377 (459)
T KOG0326|consen 303 FVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFR--NGKCRN-LV 377 (459)
T ss_pred eechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhh--ccccce-ee
Confidence 34578999999999887654 48999999999999999999999999999999999999999999998 455565 88
Q ss_pred ecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 133 STRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 133 s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++.--+|+|+++.+.|||||.|-|++.|.||+||.||.|.-+-.
T Consensus 378 ctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlA 422 (459)
T KOG0326|consen 378 CTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLA 422 (459)
T ss_pred ehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceE
Confidence 999999999999999999999999999999999999999988754
No 55
>KOG0341|consensus
Probab=99.57 E-value=2.1e-15 Score=131.29 Aligned_cols=118 Identities=22% Similarity=0.349 Sum_probs=105.3
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
+...+|+-+|++.|. ....+|+||+.-...+|.|.++|--.|+..+.+||+..+++|...++.|+.+..+ | |+.
T Consensus 404 VkqEaKiVylLeCLQ---KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD--V-LVA 477 (610)
T KOG0341|consen 404 VKQEAKIVYLLECLQ---KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD--V-LVA 477 (610)
T ss_pred HHhhhhhhhHHHHhc---cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc--e-EEE
Confidence 446677777777664 4667999999999999999999999999999999999999999999999854444 3 899
Q ss_pred cccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 134 TRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 134 ~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
|++++.||++++..||||||.|-.-..|.|||||++|.|.++-.
T Consensus 478 TDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiA 521 (610)
T KOG0341|consen 478 TDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIA 521 (610)
T ss_pred ecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCccee
Confidence 99999999999999999999999999999999999999998754
No 56
>KOG0342|consensus
Probab=99.57 E-value=4.2e-15 Score=132.87 Aligned_cols=116 Identities=16% Similarity=0.311 Sum_probs=103.6
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..++..+..+|++...+ .|+|||+....+.......|+...+++..+||+.++..|.....+|....++ +|++|++
T Consensus 314 ~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg---IL~cTDV 389 (543)
T KOG0342|consen 314 DSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG---ILVCTDV 389 (543)
T ss_pred cchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc---eEEecch
Confidence 34456777777764333 7999999999999999999999999999999999999999999999955555 4999999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
++||+|++.++.|+.||+|-+|..|.||+||++|.|.+|.
T Consensus 390 aARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 390 AARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred hhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 9999999999999999999999999999999999988875
No 57
>KOG1000|consensus
Probab=99.56 E-value=6.3e-16 Score=138.19 Aligned_cols=100 Identities=26% Similarity=0.368 Sum_probs=86.1
Q ss_pred hccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceE
Q psy10684 188 YRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV 264 (288)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v 264 (288)
..+...+++++.......+..+. ++++.+.+|||+++..+|+.+.+.|| .+++++|.++|++|+|+||++|+|+.|
T Consensus 488 ~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ-~seev~VAvlsItA~gvGLt~tAa~~V 566 (689)
T KOG1000|consen 488 PDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQ-TSEEVRVAVLSITAAGVGLTLTAASVV 566 (689)
T ss_pred ccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhc-cccceEEEEEEEeecccceeeeccceE
Confidence 44455556666655555554443 56899999999999999999999999 899999999999999999999999999
Q ss_pred EEeCCCCChhhhhhhhhhh--------hhhcC
Q psy10684 265 VLYDSDWNPQMDLQAMVRT--------VIAYF 288 (288)
Q Consensus 265 ~~~d~~wnp~~~~Qa~~Ra--------~~~~~ 288 (288)
++.+.+|||.+-.||.||| ++|||
T Consensus 567 VFaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 567 VFAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred EEEEecCCCceEEechhhhhhccccceeeEEE
Confidence 9999999999999999999 77776
No 58
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.56 E-value=6.9e-15 Score=103.70 Aligned_cols=81 Identities=27% Similarity=0.474 Sum_probs=73.3
Q ss_pred HHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHH
Q psy10684 89 ILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRE 168 (288)
Q Consensus 89 ~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~ 168 (288)
.+...|...++++..+||+++.++|..+++.|+++. . .+|++|.+++.|+|++.+++||+++++|++..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGK--I-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCC--C-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 466778888999999999999999999999998433 3 4588999999999999999999999999999999999999
Q ss_pred HHHh
Q psy10684 169 AKIL 172 (288)
Q Consensus 169 ~R~G 172 (288)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9976
No 59
>KOG0345|consensus
Probab=99.56 E-value=1.2e-14 Score=129.34 Aligned_cols=117 Identities=16% Similarity=0.295 Sum_probs=103.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
...|...++++|.. ...+|+|||.......+.....+... .++.+.+||.|++..|.+++..|.+...+ +|++
T Consensus 239 a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~---vl~~ 313 (567)
T KOG0345|consen 239 ADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG---VLFC 313 (567)
T ss_pred HHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc---eEEe
Confidence 55688888888876 44679999999888888888777654 78899999999999999999999953443 4899
Q ss_pred cccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 134 TRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 134 ~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
|+++++|||+++.+.||.||||-+|+...||.||++|.|+.|..
T Consensus 314 TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~A 357 (567)
T KOG0345|consen 314 TDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNA 357 (567)
T ss_pred ehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccce
Confidence 99999999999999999999999999999999999999999874
No 60
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=1.4e-14 Score=135.49 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc
Q psy10684 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL 139 (288)
Q Consensus 60 ~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~ 139 (288)
+..+.+.+.. ...+.+.||||+....++.+...|...|+++..+||+++.++|..+++.|. .+.+.| |++|++.++
T Consensus 213 ~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~--~g~~~v-LVaT~~~~~ 288 (470)
T TIGR00614 213 LEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ--RDEIQV-VVATVAFGM 288 (470)
T ss_pred HHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH--cCCCcE-EEEechhhc
Confidence 3344444432 134567799999999999999999999999999999999999999999998 345555 889999999
Q ss_pred cccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 140 GINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 140 Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
|+|++++++||++++|.++..|.|++||++|.|+.+..
T Consensus 289 GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~ 326 (470)
T TIGR00614 289 GINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSEC 326 (470)
T ss_pred cCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceE
Confidence 99999999999999999999999999999999988653
No 61
>KOG1001|consensus
Probab=99.54 E-value=1.2e-16 Score=152.47 Aligned_cols=89 Identities=27% Similarity=0.412 Sum_probs=82.0
Q ss_pred hhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC
Q psy10684 194 QLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD 270 (288)
Q Consensus 194 ~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~ 270 (288)
+++++++...+.++.+- ..++.+.+++|.++...|.+.+..|. +++.+.|+++|++|||+|||||+|+||+++|||
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~-~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFP-CDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccc-cCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 67777777777666663 56899999999999999999999999 999999999999999999999999999999999
Q ss_pred CChhhhhhhhhhh
Q psy10684 271 WNPQMDLQAMVRT 283 (288)
Q Consensus 271 wnp~~~~Qa~~Ra 283 (288)
|||++|+||||||
T Consensus 620 wnp~~eeQaidR~ 632 (674)
T KOG1001|consen 620 WNPAVEEQAIDRA 632 (674)
T ss_pred cChHHHHHHHHHH
Confidence 9999999999999
No 62
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.53 E-value=4.6e-14 Score=127.12 Aligned_cols=118 Identities=19% Similarity=0.384 Sum_probs=103.0
Q ss_pred cCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhcCcEEE-EeeC--------CCCHHHHHHHHHhhcCCC
Q psy10684 56 NSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWRGFKYC-RLDG--------QTAHEDRQRQINDFNMEG 124 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~-~~~G--------~~~~~~R~~~i~~F~~~~ 124 (288)
.-||+..+.+++++.. ..+.++|||++++++.+.|...|...++... ++-| +|++++..+++++|+.
T Consensus 346 ~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~-- 423 (542)
T COG1111 346 EHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK-- 423 (542)
T ss_pred CCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc--
Confidence 5789999999999865 4468999999999999999999999988765 6655 4899999999999984
Q ss_pred CCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 125 SDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 125 ~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+...| |++|.+|-+|||++.++.||+|||.-+|-...||+||+||- +.|.|
T Consensus 424 Ge~nV-LVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv 474 (542)
T COG1111 424 GEYNV-LVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRV 474 (542)
T ss_pred CCceE-EEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeE
Confidence 45555 89999999999999999999999999999999999999987 55543
No 63
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.53 E-value=4.4e-14 Score=135.83 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccc
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 138 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~ 138 (288)
+...+...+.. ..+.++||||+....++.+...|...|+++..+||+++.++|.++++.|.. +.+.| |++|.+.+
T Consensus 223 ~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~--g~~~V-LVaT~a~~ 297 (607)
T PRK11057 223 PLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR--DDLQI-VVATVAFG 297 (607)
T ss_pred hHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC--CCCCE-EEEechhh
Confidence 44444444432 346799999999999999999999999999999999999999999999984 44455 88999999
Q ss_pred ccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 139 LGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+|+|+++++.||+||+|.++..|.|++||++|.|..+.
T Consensus 298 ~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~ 335 (607)
T PRK11057 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE 335 (607)
T ss_pred ccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCce
Confidence 99999999999999999999999999999999997754
No 64
>PTZ00424 helicase 45; Provisional
Probab=99.52 E-value=7.7e-14 Score=128.04 Aligned_cols=114 Identities=20% Similarity=0.334 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccc
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 138 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~ 138 (288)
|...+..++.. ....++||||+....++.+...|...++.+..+||+++.++|..+++.|++ +.++| |++|++.+
T Consensus 254 ~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~--g~~~v-LvaT~~l~ 328 (401)
T PTZ00424 254 KFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS--GSTRV-LITTDLLA 328 (401)
T ss_pred HHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCE-EEEccccc
Confidence 44444444432 235689999999999999999999999999999999999999999999983 45555 89999999
Q ss_pred ccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 139 LGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+|+|++.+++||++|+|.++..+.|++||++|.|..+.+
T Consensus 329 ~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~ 367 (401)
T PTZ00424 329 RGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVA 367 (401)
T ss_pred CCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceE
Confidence 999999999999999999999999999999999988765
No 65
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=6.5e-14 Score=134.38 Aligned_cols=114 Identities=17% Similarity=0.281 Sum_probs=95.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+.++..+++.....++|+||||++...++.+...| + ...++|+++..+|.+++++|+ ..+.+.+ |+.++
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr-~~~~i~v-Lv~Sk 550 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQ-HNPKVNT-IFLSK 550 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHH-hCCCccE-EEEec
Confidence 456778877787754457899999999999888888777 3 345899999999999999998 3345566 55569
Q ss_pred cccccccccccceeEEecCCC-CcchhhhhhHHHHHHhhhcc
Q psy10684 136 AGGLGINLATADVVVLYDSDW-NPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~w-np~~~~Qa~~R~~R~Gq~~~ 176 (288)
+|++|+|++.|+.||++++++ ++..+.||+||+.|.+..+.
T Consensus 551 VgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~ 592 (732)
T TIGR00603 551 VGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSD 592 (732)
T ss_pred ccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCc
Confidence 999999999999999999986 99999999999999987654
No 66
>KOG1015|consensus
Probab=99.50 E-value=1.1e-14 Score=138.39 Aligned_cols=72 Identities=40% Similarity=0.754 Sum_probs=66.4
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCC--CeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGS--DIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~--~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
.|..|-+|||++....|++..++|| +.. ..++||||++||++|+||.|||+||++|-.|||.-+.|+|-|+|
T Consensus 1187 ~GkDyyriDGst~s~~R~k~~~~FN-dp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvy 1260 (1567)
T KOG1015|consen 1187 RGKDYYRLDGSTTSQSRKKWAEEFN-DPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVY 1260 (1567)
T ss_pred cCCceEEecCcccHHHHHHHHHHhc-CcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHH
Confidence 3678999999999999999999999 433 46689999999999999999999999999999999999999994
No 67
>KOG4284|consensus
Probab=99.49 E-value=5.3e-14 Score=129.55 Aligned_cols=147 Identities=16% Similarity=0.197 Sum_probs=121.0
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCccccc--cCc---------hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHH
Q psy10684 26 MQLRKCSNHPYLFDGAEPGPPYTTDEHLVF--NSG---------KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYC 94 (288)
Q Consensus 26 ~~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~--~s~---------K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l 94 (288)
.+|.+....|.|+.-....+.......++. .|+ |+..|-.+++.+. -...||||....-++-++.+|
T Consensus 215 n~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L 292 (980)
T KOG4284|consen 215 NLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHL 292 (980)
T ss_pred HHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHh
Confidence 346677778888876655544444444332 455 7777777776543 358999999999999999999
Q ss_pred hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 95 YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 95 ~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
...|+++..+.|.|++.+|.-+++..+ .-.++| |++|+..++|+|-..+|-|||+|+|-|..+|.|||||++|.|..
T Consensus 293 ~ssG~d~~~ISgaM~Q~~Rl~a~~~lr--~f~~rI-LVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~ 369 (980)
T KOG4284|consen 293 KSSGLDVTFISGAMSQKDRLLAVDQLR--AFRVRI-LVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAH 369 (980)
T ss_pred hccCCCeEEeccccchhHHHHHHHHhh--hceEEE-EEecchhhccCCccccceEEecCCCcchHHHHHHhhhccccccc
Confidence 999999999999999999999999987 345565 89999999999999999999999999999999999999999988
Q ss_pred cch
Q psy10684 175 GSI 177 (288)
Q Consensus 175 ~~v 177 (288)
|-.
T Consensus 370 G~a 372 (980)
T KOG4284|consen 370 GAA 372 (980)
T ss_pred cee
Confidence 753
No 68
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=1.7e-13 Score=130.17 Aligned_cols=117 Identities=17% Similarity=0.151 Sum_probs=100.1
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+.+|.++++.....+..+||||++....+.+...|...|+++..+||.++ +|+..+..|...... ++++|+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEcc
Confidence 456899999999887666788999999999999999999999999999999865 555556666522332 489999
Q ss_pred ccccccccc---ccc-----eeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLA---TAD-----VVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~---~a~-----~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||+|+. .+. |||++|.|-++..|.|++||++|.|..|..
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s 579 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY 579 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE
Confidence 999999998 443 999999999999999999999999999876
No 69
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.48 E-value=2.3e-13 Score=133.19 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=96.5
Q ss_pred HHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--------CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 64 DKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--------GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 64 ~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--------~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+++..+...+.++||||+++..++.+...|... +.++..+||++++++|.++.++|+ ++.+++ |++|+
T Consensus 261 ~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~--~G~i~v-LVaTd 337 (742)
T TIGR03817 261 ADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALR--DGELLG-VATTN 337 (742)
T ss_pred HHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHH--cCCceE-EEECc
Confidence 3444444456789999999999999999887653 567789999999999999999998 455555 89999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+.++|+|+...++||+++.|-+...|.|++||++|.|+.+.+
T Consensus 338 ~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~a 379 (742)
T TIGR03817 338 ALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALV 379 (742)
T ss_pred hHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEE
Confidence 999999999999999999999999999999999999987653
No 70
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.48 E-value=1.5e-13 Score=132.18 Aligned_cols=116 Identities=20% Similarity=0.225 Sum_probs=101.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|...+.+.+.. ..+.+.||||+....++.+...|...|+++..+||+++.++|..+++.|.. +.+.| |++|.
T Consensus 208 ~~~~~~~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~--g~~~v-lVaT~ 282 (591)
T TIGR01389 208 KNNKQKFLLDYLKK--HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY--DDVKV-MVATN 282 (591)
T ss_pred CCCHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc--CCCcE-EEEec
Confidence 34566667776654 236799999999999999999999999999999999999999999999984 34444 89999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+.+.|+|++.++.||++++|.++..|.|++||++|.|+.+.
T Consensus 283 a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~ 323 (591)
T TIGR01389 283 AFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAE 323 (591)
T ss_pred hhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCce
Confidence 99999999999999999999999999999999999997653
No 71
>KOG0348|consensus
Probab=99.47 E-value=3.5e-13 Score=121.80 Aligned_cols=119 Identities=20% Similarity=0.343 Sum_probs=94.7
Q ss_pred cCchHH--HHHHHHHHHHh--CCCeEEEEecchHHHHHHHHHH----hh------------------cCcEEEEeeCCCC
Q psy10684 56 NSGKMV--VLDKLLPKLKA--QESRVLIFSQMTRMLDILEDYC----YW------------------RGFKYCRLDGQTA 109 (288)
Q Consensus 56 ~s~K~~--~l~~ll~~~~~--~~~kviIFs~~~~~~~~l~~~l----~~------------------~~~~~~~~~G~~~ 109 (288)
-.+|+. +|..+|..... ...|+|||.+..++++.=...| .. .+.++.++||+|+
T Consensus 403 VPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~ 482 (708)
T KOG0348|consen 403 VPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSME 482 (708)
T ss_pred cCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchh
Confidence 355655 56666665432 3468899988888876544333 22 1357899999999
Q ss_pred HHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 110 HEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 110 ~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++|...+..|...... +|++|++++|||||+.+..||-||+|..++.|.||+||+.|+|..|..
T Consensus 483 QeeRts~f~~Fs~~~~~---VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~a 547 (708)
T KOG0348|consen 483 QEERTSVFQEFSHSRRA---VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEA 547 (708)
T ss_pred HHHHHHHHHhhccccce---EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCce
Confidence 99999999999843332 589999999999999999999999999999999999999999999864
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=2.2e-13 Score=131.86 Aligned_cols=118 Identities=15% Similarity=0.073 Sum_probs=104.5
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
....|..++.+.+......+.++||||++....+.+...|...|+++..+||.++..++..+...++ .+ . ++++|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~--~g--~-VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQ--KG--A-VTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCC--CC--e-EEEEc
Confidence 3567999999999877677899999999999999999999999999999999998888877777765 22 3 48999
Q ss_pred ccccccccc---cccc-----eeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINL---ATAD-----VVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl---~~a~-----~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+.+|||+|+ +.++ |||++|.|-|+..|.|++||++|.|+.|..
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 999999999 4777 999999999999999999999999999865
No 73
>KOG0298|consensus
Probab=99.46 E-value=8.5e-14 Score=136.20 Aligned_cols=141 Identities=22% Similarity=0.186 Sum_probs=116.3
Q ss_pred cCchHHHHHHHHHHHHh--CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 56 NSGKMVVLDKLLPKLKA--QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~--~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
.++|+..+...+..+.- ..+|+|+|++|...+|.++..+..+++.+....+ . ++-...+..|+ ++.||++.
T Consensus 1201 fg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~-t--~d~~dc~~~fk----~I~clll~ 1273 (1394)
T KOG0298|consen 1201 FGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE-T--EDFDDCIICFK----SIDCLLLF 1273 (1394)
T ss_pred hccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC-C--cchhhhhhhcc----cceEEEEE
Confidence 46788888776665543 3589999999999999999999999998755544 3 56667888887 38899999
Q ss_pred cccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhccccchhhhhhccCC
Q psy10684 134 TRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQLRIAYGANK 203 (288)
Q Consensus 134 ~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~~~~~~~~~ 203 (288)
+..++-||||..|.||++.+|--||+.+.||+||+||+||++++ .+++++.+..+....+..........
T Consensus 1274 ~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~~~~~~~ 1350 (1394)
T KOG0298|consen 1274 VSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLTKSTSWD 1350 (1394)
T ss_pred eccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999985 57788888777766666655444433
No 74
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.46 E-value=1.6e-13 Score=135.57 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=93.7
Q ss_pred CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEec
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD 153 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d 153 (288)
+.+.||||.....++.+...|...|+.+..+||+++.++|..+++.|.. +.++| |++|.+.++|+|+++++.||+|+
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~--Gei~V-LVATdAFGMGIDkPDVR~VIHyd 756 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK--DEINI-ICATVAFGMGINKPDVRFVIHHS 756 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc--CCCcE-EEEechhhcCCCccCCcEEEEcC
Confidence 4689999999999999999999999999999999999999999999984 44555 88999999999999999999999
Q ss_pred CCCCcchhhhhhHHHHHHhhhcch
Q psy10684 154 SDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 154 ~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+|.++..|.|++||+||.|+.+..
T Consensus 757 lPkSiEsYyQriGRAGRDG~~g~c 780 (1195)
T PLN03137 757 LPKSIEGYHQECGRAGRDGQRSSC 780 (1195)
T ss_pred CCCCHHHHHhhhcccCCCCCCceE
Confidence 999999999999999999987654
No 75
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.43 E-value=7.3e-13 Score=126.73 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=117.2
Q ss_pred HHHHhhcCCCCCCCCCCCC-CCCCCCcccc-ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEE
Q psy10684 26 MQLRKCSNHPYLFDGAEPG-PPYTTDEHLV-FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCR 103 (288)
Q Consensus 26 ~~Lrq~~~hP~l~~~~~~~-~~~~~~~~~~-~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~ 103 (288)
..|+++.+-+.++-++-.. ...+....++ ....|+.++.+.+.+....+..+||||++....+.+...|...|+++..
T Consensus 355 ~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~ 434 (745)
T TIGR00963 355 EEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNV 434 (745)
T ss_pred HHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEE
Confidence 3466666666554332221 1122222222 2346888998888888888999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccc-------cceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 104 LDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT-------ADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 104 ~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~-------a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+||. +.+|+..+..|..... . ++++|+.+|||+|+.. .-|||+++.|-++..+.|+.||++|.|..|.
T Consensus 435 Lna~--q~~rEa~ii~~ag~~g--~-VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~ 509 (745)
T TIGR00963 435 LNAK--NHEREAEIIAQAGRKG--A-VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGS 509 (745)
T ss_pred eeCC--hHHHHHHHHHhcCCCc--e-EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcc
Confidence 9998 6899999999973322 3 4899999999999998 6799999999999999999999999999997
Q ss_pred h
Q psy10684 177 I 177 (288)
Q Consensus 177 v 177 (288)
.
T Consensus 510 s 510 (745)
T TIGR00963 510 S 510 (745)
T ss_pred e
Confidence 4
No 76
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.42 E-value=8.1e-13 Score=124.48 Aligned_cols=119 Identities=16% Similarity=0.095 Sum_probs=102.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...+...+.+++..+...+.+++||+..++.++.|.+.|...|+++..+||+++.++|..+++.|+ .+...|++.+.+
T Consensus 326 ~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~--~~~~~vLvaT~~ 403 (501)
T PHA02558 326 HTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAE--GGKGIIIVASYG 403 (501)
T ss_pred cHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHh--CCCCeEEEEEcc
Confidence 344556666677666667789999999999999999999999999999999999999999999997 344566666679
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
..++|+|++.+++||++.|+.+...+.|++||++|.+..++
T Consensus 404 ~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 404 VFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred eeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 99999999999999999999999999999999999886553
No 77
>KOG0339|consensus
Probab=99.42 E-value=1.8e-13 Score=123.05 Aligned_cols=132 Identities=17% Similarity=0.282 Sum_probs=112.2
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+..|++-|...... .|+|||..-....+.|+..|...++++..+||++.+.+|.+.+..|+... +.| |+.|+
T Consensus 451 ~~~Kl~wl~~~L~~f~S~-gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~--~~V-lvatD 526 (731)
T KOG0339|consen 451 EEKKLNWLLRHLVEFSSE-GKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKR--KPV-LVATD 526 (731)
T ss_pred cHHHHHHHHHHhhhhccC-CcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcC--Cce-EEEee
Confidence 456888888777665443 49999999999999999999999999999999999999999999998433 333 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchHHHHHHHhhhhccc
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKALEAKMSRYRAP 191 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i~~~~~~~~~~ 191 (288)
++++||++....+|+|||.--+-.++.|+|||.+|.|-++..-..|+++-.++...
T Consensus 527 vaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~ 582 (731)
T KOG0339|consen 527 VAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGH 582 (731)
T ss_pred HhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhH
Confidence 99999999999999999999999999999999999999987665555555444433
No 78
>KOG0338|consensus
Probab=99.42 E-value=3.3e-13 Score=121.37 Aligned_cols=112 Identities=20% Similarity=0.320 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccc
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 138 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~ 138 (288)
+-..|..++.+.- ..++|||.+....+..+.-.|.-.|+++..+||+.++++|.+.++.|+ +..+.| |++|++++
T Consensus 413 Rea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk--~~eidv-LiaTDvAs 487 (691)
T KOG0338|consen 413 REAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFK--KEEIDV-LIATDVAS 487 (691)
T ss_pred cHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHH--hccCCE-EEEechhh
Confidence 3344555555433 468999999999999999999999999999999999999999999998 455555 89999999
Q ss_pred ccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 139 LGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
+||++.++..||||+.|-....|.||+||+.|.|+.|
T Consensus 488 RGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaG 524 (691)
T KOG0338|consen 488 RGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAG 524 (691)
T ss_pred ccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCc
Confidence 9999999999999999999999999999999999875
No 79
>KOG0327|consensus
Probab=99.41 E-value=2.9e-13 Score=118.04 Aligned_cols=118 Identities=21% Similarity=0.329 Sum_probs=104.9
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|+..|..+.+ +-...+||++..+-++.+...|..+++....+||.+.+.+|...+..|+++.+ +| |++++.
T Consensus 250 ~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gss--rv-lIttdl 322 (397)
T KOG0327|consen 250 EEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSS--RV-LITTDL 322 (397)
T ss_pred cccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCc--eE-Eeeccc
Confidence 347777777766 44689999999999999999999999999999999999999999999985444 44 899999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchHHHH
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKAL 181 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i 181 (288)
.++|++++.++-||+||.|-+...|.+++||++|.|+++.+-..+
T Consensus 323 ~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v 367 (397)
T KOG0327|consen 323 LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFV 367 (397)
T ss_pred cccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeee
Confidence 999999999999999999999999999999999999999764433
No 80
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.37 E-value=2.3e-12 Score=124.02 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=102.1
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++.+.+......+.++||||++....+.+...|...|+++..+||.+.+++|..+...|+ .+ . ++++|+
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~--~g--~-VlIATd 480 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQ--KG--A-VTVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCC--CC--e-EEEEcc
Confidence 557999999999887788899999999999999999999999999999999999888877766665 22 3 489999
Q ss_pred ccccccccc---------ccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLA---------TADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~---------~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||+|+. +.++|+++++|-+. .+.|+.||++|.|..|..
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSS 530 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeE
Confidence 999999999 88999999998665 449999999999999875
No 81
>KOG0343|consensus
Probab=99.34 E-value=6.2e-12 Score=114.29 Aligned_cols=117 Identities=15% Similarity=0.232 Sum_probs=104.0
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
.-..|+.+|...|+. ....|.|||.++...+..+...+... |++...+||.|++..|.++...|.. .-.++|+
T Consensus 296 ~l~~Ki~~L~sFI~s--hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~---~~~~vLF 370 (758)
T KOG0343|consen 296 PLEDKIDMLWSFIKS--HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR---KRAVVLF 370 (758)
T ss_pred ehhhHHHHHHHHHHh--ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH---hcceEEE
Confidence 356799999999886 33569999999999999999888764 9999999999999999999999982 2345699
Q ss_pred ecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 133 STRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 133 s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+|+++++||+++.++.||.+|.|-+-..|.||+||+.|.+..|.
T Consensus 371 ~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~ 414 (758)
T KOG0343|consen 371 CTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGE 414 (758)
T ss_pred eehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCc
Confidence 99999999999999999999999999999999999999998875
No 82
>KOG0347|consensus
Probab=99.34 E-value=7.1e-13 Score=120.22 Aligned_cols=98 Identities=14% Similarity=0.216 Sum_probs=91.0
Q ss_pred CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecC
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS 154 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~ 154 (288)
.+.||||+..+.+..|...|...+|+...+|.+|.+++|.+.+++|.+.. ..+|++|++++||||++.+.|||+|..
T Consensus 464 GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~---~~VLiaTDVAARGLDIp~V~HVIHYqV 540 (731)
T KOG0347|consen 464 GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSP---SGVLIATDVAARGLDIPGVQHVIHYQV 540 (731)
T ss_pred CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCC---CeEEEeehhhhccCCCCCcceEEEeec
Confidence 48999999999999999999999999999999999999999999998432 235999999999999999999999999
Q ss_pred CCCcchhhhhhHHHHHHhhhc
Q psy10684 155 DWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 155 ~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
|-...+|.||-||+.|.+..|
T Consensus 541 PrtseiYVHRSGRTARA~~~G 561 (731)
T KOG0347|consen 541 PRTSEIYVHRSGRTARANSEG 561 (731)
T ss_pred CCccceeEecccccccccCCC
Confidence 999999999999999998765
No 83
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=5.4e-12 Score=121.79 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=114.7
Q ss_pred HHHhhcCCCCCCCCCCCCC-CCCCCcc-ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 27 QLRKCSNHPYLFDGAEPGP-PYTTDEH-LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 27 ~Lrq~~~hP~l~~~~~~~~-~~~~~~~-~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
.|+++.+-+.+.-+.-... ..+.... ......|..++.+.+......+..+||||++....+.|...|...|+++..+
T Consensus 391 Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~L 470 (796)
T PRK12906 391 EFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVL 470 (796)
T ss_pred HHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEe
Confidence 4666666665553322211 1111111 1224568999999998877889999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccc---ccc-----eeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 105 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA---TAD-----VVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 105 ~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~---~a~-----~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
||.....++.-+...++ .+. ++++|+.+|||.|+. .+. |||+++.|-++..+.|+.||++|.|..|.
T Consensus 471 na~~~~~Ea~ii~~ag~--~g~---VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~ 545 (796)
T PRK12906 471 NAKNHAKEAEIIMNAGQ--RGA---VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGS 545 (796)
T ss_pred cCCcHHHHHHHHHhcCC--Cce---EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcc
Confidence 99998666666666665 222 489999999999995 667 99999999999999999999999999997
Q ss_pred h
Q psy10684 177 I 177 (288)
Q Consensus 177 v 177 (288)
.
T Consensus 546 s 546 (796)
T PRK12906 546 S 546 (796)
T ss_pred e
Confidence 5
No 84
>KOG0344|consensus
Probab=99.33 E-value=5e-12 Score=115.70 Aligned_cols=117 Identities=20% Similarity=0.315 Sum_probs=103.1
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHH-hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYC-YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l-~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
.-+|+-++.+++... -...++||.|+.+.+..|...| ...++....+||..++.+|.+.+++|+ .+.+-| |++|
T Consensus 371 e~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR--~g~Iwv-LicT 445 (593)
T KOG0344|consen 371 EKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFR--IGKIWV-LICT 445 (593)
T ss_pred chhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHh--ccCeeE-EEeh
Confidence 456777777777653 3468999999999999999999 677999999999999999999999998 455666 8999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++.++|+|+.+++.|||||.|-.-..|.|++||++|.|+.+..
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A 488 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA 488 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce
Confidence 9999999999999999999999999999999999999998753
No 85
>KOG0346|consensus
Probab=99.32 E-value=4.3e-12 Score=112.49 Aligned_cols=149 Identities=20% Similarity=0.213 Sum_probs=113.8
Q ss_pred HHHHHhh-cCCCCCCCCCCCCCC-CCCCccc---cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCc
Q psy10684 25 LMQLRKC-SNHPYLFDGAEPGPP-YTTDEHL---VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGF 99 (288)
Q Consensus 25 l~~Lrq~-~~hP~l~~~~~~~~~-~~~~~~~---~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~ 99 (288)
+..|+++ |..|.++.-.+...+ .+...+. ..+..|...+..+++.-.- ..|+|||.+..+.+=.|.-.|+.-|+
T Consensus 215 v~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGi 293 (569)
T KOG0346|consen 215 VQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGI 293 (569)
T ss_pred HHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCc
Confidence 4567775 466777654333322 1111121 2245677777777774222 35999999999999999999999999
Q ss_pred EEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc-----------------------------------ccccccccc
Q psy10684 100 KYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR-----------------------------------AGGLGINLA 144 (288)
Q Consensus 100 ~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~-----------------------------------~~~~Glnl~ 144 (288)
+.|.++|.++..-|.-++++||. +-..+ ++.|+ -.+||+|++
T Consensus 294 ksciLNseLP~NSR~Hii~QFNk--G~Ydi-vIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~ 370 (569)
T KOG0346|consen 294 KSCILNSELPANSRCHIIEQFNK--GLYDI-VIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFH 370 (569)
T ss_pred HhhhhcccccccchhhHHHHhhC--cceeE-EEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccch
Confidence 99999999999999999999983 33333 45544 136899999
Q ss_pred ccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 145 TADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 145 ~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.++.|+|||.|-++..|.||+||+.|-|.+|++
T Consensus 371 ~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gta 403 (569)
T KOG0346|consen 371 HVSNVLNFDFPETVTSYIHRVGRTARGNNKGTA 403 (569)
T ss_pred heeeeeecCCCCchHHHHHhccccccCCCCCce
Confidence 999999999999999999999999999999875
No 86
>KOG0350|consensus
Probab=99.32 E-value=2.8e-12 Score=115.26 Aligned_cols=114 Identities=21% Similarity=0.279 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHh----hcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCY----WRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~----~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
|-.++..+|.. .+..++|+|+++.+....+...|+ ..++++-.++|..+.+.|.+.+++|. .+++.+ |+++
T Consensus 416 kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~--~g~i~v-LIcS 490 (620)
T KOG0350|consen 416 KPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFA--KGDINV-LICS 490 (620)
T ss_pred chHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHh--cCCceE-EEeh
Confidence 33455566654 456799999999999888887776 34677777999999999999999998 455555 8899
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++.+||+|+.+.+.||+||+|.....|.||+||+.|.||.|.+
T Consensus 491 D~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a 533 (620)
T KOG0350|consen 491 DALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYA 533 (620)
T ss_pred hhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceE
Confidence 9999999999999999999999999999999999999999975
No 87
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.30 E-value=8.4e-12 Score=124.45 Aligned_cols=109 Identities=20% Similarity=0.164 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc------CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 61 VVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR------GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 61 ~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~------~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..+...+..+...+.++||||+....++.+...|... +..+..+||+++.++|..+.+.|++ +.+++ |++|
T Consensus 271 ~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~--G~i~v-LVaT 347 (876)
T PRK13767 271 EALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR--GELKV-VVSS 347 (876)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc--CCCeE-EEEC
Confidence 3445556555566789999999999999999988763 4678899999999999999999983 44555 8899
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
++.++|+|+...++||++++|.+...+.|++||+||.+
T Consensus 348 s~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 348 TSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred ChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCC
Confidence 99999999999999999999999999999999999864
No 88
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.30 E-value=1.5e-11 Score=118.94 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=103.0
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..++..|.+.|..+...+.++||||.....++.|...|...|+++..+||.++..+|..++..|. .+.+.| +++++.
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~--~g~i~v-lV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLR--LGEFDV-LVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHH--cCCceE-EEEeCH
Confidence 45678888888888888999999999999999999999999999999999999999999999997 344544 789999
Q ss_pred ccccccccccceeEEecC-----CCCcchhhhhhHHHHHHhhhcc
Q psy10684 137 GGLGINLATADVVVLYDS-----DWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~-----~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
.++|++++.++.||++|. |-++..|.|++||++|. ..|.
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~ 549 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGK 549 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCE
Confidence 999999999999999996 56888999999999994 5554
No 89
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=2.2e-11 Score=118.80 Aligned_cols=117 Identities=14% Similarity=0.130 Sum_probs=102.9
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++.+.+......+..+||||++....+.|...|...|+++..+|+ .+.+|+..+..|..... . ++++|+
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g--~-VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKG--A-VTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCC--e-EEEecc
Confidence 346999999999988888999999999999999999999999999999998 56899999999983322 2 489999
Q ss_pred cccccccccccc--------eeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATAD--------VVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~--------~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||+|+.... +||..+.+-+...+.|++||++|.|..|..
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 999999999443 448899999999999999999999999975
No 90
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.28 E-value=1.8e-11 Score=110.72 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=91.3
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCc--EEEEeeCCCCHHHHHHH----HHhhcCCCCCeeEEE
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGF--KYCRLDGQTAHEDRQRQ----INDFNMEGSDIFIFM 131 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~--~~~~~~G~~~~~~R~~~----i~~F~~~~~~~~vll 131 (288)
.|...+..+++. ...+.++|||++..+.++.+...|...+. .+..+||+++..+|.+. ++.|.+ +...+ |
T Consensus 207 ~~~~~l~~l~~~-~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~--~~~~i-l 282 (358)
T TIGR01587 207 GEISSLERLLEF-IKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK--NEKFV-I 282 (358)
T ss_pred cCHHHHHHHHHH-hhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC--CCCeE-E
Confidence 566666666654 34568999999999999999999988765 58999999999999764 889983 34344 8
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
++|++.++|+|+. ++.||+++.| +..+.|++||++|.|+..
T Consensus 283 vaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~ 323 (358)
T TIGR01587 283 VATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKN 323 (358)
T ss_pred EECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCC
Confidence 8999999999995 8888888765 788999999999999754
No 91
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.28 E-value=1.7e-11 Score=118.13 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=103.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
..+++..|.+.|+....++.++||||.....++.|...|...|+++..+||.++..+|.+++..|. .+.+.| |++++
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr--~G~i~V-LV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLR--LGEFDV-LVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHh--cCCceE-EEEcC
Confidence 345778888888887788999999999999999999999999999999999999999999999997 345555 78999
Q ss_pred cccccccccccceeEEec-----CCCCcchhhhhhHHHHHHhhhcc
Q psy10684 136 AGGLGINLATADVVVLYD-----SDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d-----~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
..++|++++.++.|+++| .|-+...+.|++||++|. ..|.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~ 545 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGK 545 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCE
Confidence 999999999999999999 567888999999999997 4554
No 92
>KOG0334|consensus
Probab=99.26 E-value=5.5e-12 Score=122.12 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=106.4
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+.|+..|.++|.+..+ +.++|||++....+|.+...|.+.|+++..+||..++.+|...++.|++ +...||+.|+
T Consensus 596 e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~---~~~~LLvaTs 671 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN---GVVNLLVATS 671 (997)
T ss_pred chHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc---cCceEEEehh
Confidence 67899999999998655 6799999999999999999999999999999999999999999999983 2334589999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+.++||+......||+||.|-....|.||.||++|.|+++.
T Consensus 672 vvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~ 712 (997)
T KOG0334|consen 672 VVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGA 712 (997)
T ss_pred hhhcccccccceEEEEcccchhHHHHHHHhcccccCCccce
Confidence 99999999999999999999888889999999999998875
No 93
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.24 E-value=3.9e-11 Score=116.78 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=89.1
Q ss_pred hHHHHHHHHHH-HHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHH-----HHHHhhcC----CC----
Q psy10684 59 KMVVLDKLLPK-LKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQ-----RQINDFNM----EG---- 124 (288)
Q Consensus 59 K~~~l~~ll~~-~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~-----~~i~~F~~----~~---- 124 (288)
|+..+...+.. ....+.++||||+.+..++.+.+.|...++ ..+||.+++.+|. +++++|+. +.
T Consensus 256 Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~ 333 (844)
T TIGR02621 256 FLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARP 333 (844)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccc
Confidence 44444444333 234567999999999999999999998887 8999999999999 78999984 11
Q ss_pred CCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 125 SDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 125 ~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
.+-..+|++|+++++|||+.. ++||++..| ...|.||+||++|.|+.+
T Consensus 334 ~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 334 QQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQ 381 (844)
T ss_pred cccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCC
Confidence 011345899999999999986 899987766 478999999999999853
No 94
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.23 E-value=7.8e-12 Score=87.63 Aligned_cols=71 Identities=27% Similarity=0.513 Sum_probs=63.1
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
..++.+..++|+++..+|+..+++|+ +... .+|+++.+++.|+|++.+++|++++++|||....|+++||.
T Consensus 5 ~~~~~~~~i~~~~~~~~r~~~~~~f~--~~~~-~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~ 75 (78)
T PF00271_consen 5 KKGIKVAIIHGDMSQKERQEILKKFN--SGEI-RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAG 75 (78)
T ss_dssp HTTSSEEEESTTSHHHHHHHHHHHHH--TTSS-SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSS
T ss_pred HCCCcEEEEECCCCHHHHHHHHHHhh--ccCc-eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCC
Confidence 45788999999999999999999999 3333 45556699999999999999999999999999999999984
No 95
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.20 E-value=5.4e-11 Score=118.24 Aligned_cols=104 Identities=12% Similarity=0.129 Sum_probs=91.0
Q ss_pred HhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccce
Q psy10684 71 KAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV 148 (288)
Q Consensus 71 ~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~ 148 (288)
..++.+++|||+..+.++.+...|+.. ++++..+||.|+.++|.+++++|.+ ++..| |++|++.++|+|++.+++
T Consensus 657 l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~--Gk~~I-LVaT~iie~GIDIp~v~~ 733 (926)
T TIGR00580 657 LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK--GEFQV-LVCTTIIETGIDIPNANT 733 (926)
T ss_pred HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc--CCCCE-EEECChhhcccccccCCE
Confidence 345789999999999999999999874 7899999999999999999999984 44444 899999999999999999
Q ss_pred eEEecCCC-CcchhhhhhHHHHHHhhhcch
Q psy10684 149 VVLYDSDW-NPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 149 vi~~d~~w-np~~~~Qa~~R~~R~Gq~~~v 177 (288)
||+++.+. ..+.+.|++||++|.|+.+.+
T Consensus 734 VIi~~a~~~gls~l~Qr~GRvGR~g~~g~a 763 (926)
T TIGR00580 734 IIIERADKFGLAQLYQLRGRVGRSKKKAYA 763 (926)
T ss_pred EEEecCCCCCHHHHHHHhcCCCCCCCCeEE
Confidence 99999864 556788999999999987653
No 96
>KOG0349|consensus
Probab=99.18 E-value=8.8e-11 Score=104.17 Aligned_cols=100 Identities=16% Similarity=0.274 Sum_probs=89.7
Q ss_pred CCeEEEEecchHHHHHHHHHHhhc---CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeE
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWR---GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVV 150 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~---~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi 150 (288)
-+|+||||.....+|-|++++... .+.++.+||...+.+|.+.++.|+. ..++ +|++|+++++||++++...+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk--~dvk-flictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK--FDVK-FLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh--cCeE-EEEEehhhhccccccCCceEE
Confidence 479999999999999999999887 3789999999999999999999983 3343 599999999999999999999
Q ss_pred EecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 151 LYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 151 ~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
++..|-+-..|.|||||++|.-+.+-
T Consensus 582 nvtlpd~k~nyvhrigrvgraermgl 607 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAERMGL 607 (725)
T ss_pred EEecCcccchhhhhhhccchhhhcce
Confidence 99999999999999999998877653
No 97
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.15 E-value=2.2e-10 Score=111.69 Aligned_cols=118 Identities=11% Similarity=0.110 Sum_probs=93.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchH--------HHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCC
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTR--------MLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGS 125 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~--------~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~ 125 (288)
...+...+.+.+......+++++|||+..+ ....+.+.|... ++++..+||+++.++|.+++++|.+ +
T Consensus 453 ~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g 530 (681)
T PRK10917 453 PDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA--G 530 (681)
T ss_pred CcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc--C
Confidence 344555566666665677899999998532 234455556554 5789999999999999999999984 4
Q ss_pred CeeEEEEecccccccccccccceeEEecCCC-CcchhhhhhHHHHHHhhhcc
Q psy10684 126 DIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 126 ~~~vll~s~~~~~~Glnl~~a~~vi~~d~~w-np~~~~Qa~~R~~R~Gq~~~ 176 (288)
+.+| |++|++.++|+|+++++.||+++++. ..+.+.|+.||++|.|.++.
T Consensus 531 ~~~I-LVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~ 581 (681)
T PRK10917 531 EIDI-LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSY 581 (681)
T ss_pred CCCE-EEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceE
Confidence 4455 89999999999999999999999985 45778899999999987664
No 98
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.15 E-value=6.8e-11 Score=117.35 Aligned_cols=90 Identities=18% Similarity=0.226 Sum_probs=72.3
Q ss_pred cchhhhhhccCCCccccc----ccchhhhcccCCCccccchhHHHhhcccCC-CCeeEEEEeecccccCCCccccceEEE
Q psy10684 192 FHQLRIAYGANKGKNYTE----EEDRYLYCRLDGQTAHEDRQRQINDFNMEG-SDIFIFMLSTRAGGLGINLATADVVVL 266 (288)
Q Consensus 192 ~~~~~~~~~~~~~~~~~e----~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~-~~~~v~l~s~~agg~glnl~~a~~v~~ 266 (288)
.++++++..........+ +..|+....++|+++..+|+++++.|+ .. .+..|++ ++.+||.|+|++.|++||+
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~-~~~~~~~VLI-sTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFA-DEEDGAQVLL-CSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHh-cCCCCccEEE-echhhccCCCcccccEEEE
Confidence 445566554444333333 234889999999999999999999999 44 3566655 5599999999999999999
Q ss_pred eCCCCChhhhhhhhhhh
Q psy10684 267 YDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 267 ~d~~wnp~~~~Qa~~Ra 283 (288)
||+||||....|+++|+
T Consensus 571 fDlP~nP~~~eQRIGR~ 587 (956)
T PRK04914 571 FDLPFNPDLLEQRIGRL 587 (956)
T ss_pred ecCCCCHHHHHHHhccc
Confidence 99999999999999998
No 99
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.15 E-value=1.5e-10 Score=117.42 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=91.4
Q ss_pred HHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccc
Q psy10684 65 KLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGIN 142 (288)
Q Consensus 65 ~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Gln 142 (288)
.++.++. ++.+++||++....++.+...|... ++++..+||+|++++|.+++.+|.+ +++.| |++|++.++|+|
T Consensus 801 ~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~--Gk~~V-LVaTdIierGID 876 (1147)
T PRK10689 801 AILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--QRFNV-LVCTTIIETGID 876 (1147)
T ss_pred HHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh--cCCCE-EEECchhhcccc
Confidence 3344433 4679999999999999999999887 7889999999999999999999984 44555 889999999999
Q ss_pred ccccceeEEecCC-CCcchhhhhhHHHHHHhhhcc
Q psy10684 143 LATADVVVLYDSD-WNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 143 l~~a~~vi~~d~~-wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
++.+++||+.+++ ++.+.+.|++||+||.|+++.
T Consensus 877 IP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~ 911 (1147)
T PRK10689 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY 911 (1147)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhhccCCCCCceE
Confidence 9999999987664 577789999999999987753
No 100
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.12 E-value=3.8e-10 Score=109.19 Aligned_cols=116 Identities=12% Similarity=0.183 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecch--------HHHHHHHHHHhh--cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCee
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMT--------RMLDILEDYCYW--RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIF 128 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~--------~~~~~l~~~l~~--~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~ 128 (288)
+...+.+.+.+....+.+++|||... ..+..+...|.. .++++..+||+++.++|.++++.|++ +..+
T Consensus 433 ~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g~~~ 510 (630)
T TIGR00643 433 EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFRE--GEVD 510 (630)
T ss_pred hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCC
Confidence 33555555655556788999999765 234445555554 37889999999999999999999984 4444
Q ss_pred EEEEecccccccccccccceeEEecCCC-CcchhhhhhHHHHHHhhhcch
Q psy10684 129 IFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 129 vll~s~~~~~~Glnl~~a~~vi~~d~~w-np~~~~Qa~~R~~R~Gq~~~v 177 (288)
| |++|++.++|+|+++++.||+++++. +.+.+.|+.||++|.|+++.+
T Consensus 511 I-LVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 559 (630)
T TIGR00643 511 I-LVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYC 559 (630)
T ss_pred E-EEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEE
Confidence 4 88999999999999999999999885 567788999999999877643
No 101
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.11 E-value=2.3e-10 Score=117.41 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=84.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcC---------------------------------cEEEEeeCCCCHHHHHHHHH
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRG---------------------------------FKYCRLDGQTAHEDRQRQIN 118 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~G~~~~~~R~~~i~ 118 (288)
..+.++|||++++..++.+...|+... +.+..+||+++.++|..+.+
T Consensus 242 ~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~ 321 (1490)
T PRK09751 242 LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQ 321 (1490)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHH
Confidence 346799999999999999998887531 12457889999999999999
Q ss_pred hhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 119 DFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 119 ~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
.|+ ++.+++ |++|++..+|+|+..++.||+++.|.+...+.|++||++|.
T Consensus 322 ~fK--~G~Lrv-LVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 322 ALK--SGELRC-VVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHH--hCCceE-EEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 998 345565 89999999999999999999999999999999999999985
No 102
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.10 E-value=6.5e-10 Score=104.22 Aligned_cols=100 Identities=19% Similarity=0.244 Sum_probs=92.0
Q ss_pred CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEec
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD 153 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d 153 (288)
+...||||.++..++.+++.|...|+....|||+++.++|+.+-++|..+ +++| +++|.|-|.|+|-++...||+||
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~--~~~i-iVAT~AFGMGIdKpdVRfViH~~ 306 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND--EIKV-MVATNAFGMGIDKPDVRFVIHYD 306 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC--CCcE-EEEeccccCccCCCCceEEEEec
Confidence 45689999999999999999999999999999999999999999999843 3344 88999999999999999999999
Q ss_pred CCCCcchhhhhhHHHHHHhhhcc
Q psy10684 154 SDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 154 ~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+|-+...|-|-+||+||-|....
T Consensus 307 lP~s~EsYyQE~GRAGRDG~~a~ 329 (590)
T COG0514 307 LPGSIESYYQETGRAGRDGLPAE 329 (590)
T ss_pred CCCCHHHHHHHHhhccCCCCcce
Confidence 99999999999999999997643
No 103
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.08 E-value=3.7e-10 Score=108.82 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=82.0
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeE
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVV 150 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi 150 (288)
.+.++|||++....++.+.+.|... ++.+..+||++++. ++.+++|. .++..+| |++|+.+++|++++++++||
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff-~~gk~kI-LVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVY-SSKNPSI-IISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHh-ccCceeE-EeccChhhccccccCeeEEE
Confidence 3568999999999999999999887 79999999999864 56778874 2344555 89999999999999999999
Q ss_pred Eec---CC---------CCcchhhhhhHHHHHHhhhcch
Q psy10684 151 LYD---SD---------WNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 151 ~~d---~~---------wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.++ .| .+.+.+.||.||+||. +.|.+
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c 507 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTY 507 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeE
Confidence 997 22 2566788999999998 56654
No 104
>KOG0337|consensus
Probab=99.06 E-value=2.3e-10 Score=101.18 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=116.7
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCcc---ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 28 LRKCSNHPYLFDGAEPGPPYTTDEH---LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 28 Lrq~~~hP~l~~~~~~~~~~~~~~~---~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
-|+-..||.++.-.-...-.+..+. ......|..+|+.++..... +++.+||+....-++.+...|...|+.+..+
T Consensus 213 akaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~i 291 (529)
T KOG0337|consen 213 AKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDI 291 (529)
T ss_pred HHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCcccc
Confidence 4455578888763221111122222 23456788888888776443 4689999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 105 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 105 ~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.|++.+..|...+..|+....+ +|+.|++|++|++++..+.|||||.|-++..+.||+||+.|.|+++..
T Consensus 292 ysslD~~aRk~~~~~F~~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~a 361 (529)
T KOG0337|consen 292 YSSLDQEARKINGRDFRGRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRA 361 (529)
T ss_pred ccccChHhhhhccccccCCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceE
Confidence 9999999999999999843333 489999999999999999999999999999999999999999999863
No 105
>KOG1016|consensus
Probab=99.05 E-value=1e-10 Score=109.92 Aligned_cols=71 Identities=46% Similarity=0.786 Sum_probs=66.0
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCee-EEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIF-IFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~-v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
...|.+++|.++..+|.++|..|+ +.+.+. .|++|++||..|+||..||+++++|.-|||-...||++|.|
T Consensus 761 n~sy~rldG~t~a~~rekLinqfN-~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvy 832 (1387)
T KOG1016|consen 761 NRSYLRLDGTTSAADREKLINQFN-SEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVY 832 (1387)
T ss_pred ccceecccCCcccchHHHHHHhcc-CCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhh
Confidence 467889999999999999999999 566555 89999999999999999999999999999999999999986
No 106
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.04 E-value=1.2e-09 Score=107.73 Aligned_cols=100 Identities=15% Similarity=0.215 Sum_probs=84.9
Q ss_pred CCCeEEEEecchHHHHHHHHHHhh---cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccccccee
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYW---RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV 149 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~---~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~v 149 (288)
.+.++|||++....++.+...|.. .++.++.+||+++.++|.++++.|. ++..+| |++|+++.+||++.++++|
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~--~G~rkV-lVATnIAErgItIp~V~~V 284 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDP--QGRRKV-VLATNIAETSLTIEGIRVV 284 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcc--cCCeEE-EEecchHhhcccccCceEE
Confidence 357899999999999999999987 4799999999999999999999997 334455 8899999999999999999
Q ss_pred EEecCC----CCcch--------------hhhhhHHHHHHhhhcc
Q psy10684 150 VLYDSD----WNPQM--------------DLQAMVREAKILRRGS 176 (288)
Q Consensus 150 i~~d~~----wnp~~--------------~~Qa~~R~~R~Gq~~~ 176 (288)
|+++.+ +||.. +.||.||+||. +.|.
T Consensus 285 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~ 328 (819)
T TIGR01970 285 IDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGV 328 (819)
T ss_pred EEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCE
Confidence 999876 45544 67888888887 4544
No 107
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.02 E-value=1.7e-09 Score=105.09 Aligned_cols=147 Identities=13% Similarity=0.076 Sum_probs=115.9
Q ss_pred HHHHhhcCCCCCCCCCCCCC-CCCCCccc-cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEE
Q psy10684 26 MQLRKCSNHPYLFDGAEPGP-PYTTDEHL-VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCR 103 (288)
Q Consensus 26 ~~Lrq~~~hP~l~~~~~~~~-~~~~~~~~-~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~ 103 (288)
..|+++.+-+.++-++-... ..+....+ .....|+.++.+.+.+....+..|||||++....+.|...|...|+++..
T Consensus 380 ~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~v 459 (830)
T PRK12904 380 EEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNV 459 (830)
T ss_pred HHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEe
Confidence 45667776666554332211 11111122 23456999999999888888999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccc--------------------------------------
Q psy10684 104 LDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT-------------------------------------- 145 (288)
Q Consensus 104 ~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~-------------------------------------- 145 (288)
+||. +.+|+..+..|..... . ++++|+.+|||+|+.-
T Consensus 460 Lnak--q~eREa~Iia~Ag~~g--~-VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 534 (830)
T PRK12904 460 LNAK--NHEREAEIIAQAGRPG--A-VTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAG 534 (830)
T ss_pred ccCc--hHHHHHHHHHhcCCCc--e-EEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcC
Confidence 9996 6799999999983322 3 4899999999999874
Q ss_pred cceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 146 ADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 146 a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.=|||--+.+-|...+.|..||++|.|..|+.
T Consensus 535 GLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 535 GLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred CCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 45889999999999999999999999999875
No 108
>KOG0354|consensus
Probab=99.02 E-value=1.9e-09 Score=102.68 Aligned_cols=116 Identities=20% Similarity=0.301 Sum_probs=97.3
Q ss_pred cCchHHHHHHHHHHHHhC--CCeEEEEecchHHHHHHHHHHhh---cCcEEEEeeC--------CCCHHHHHHHHHhhcC
Q psy10684 56 NSGKMVVLDKLLPKLKAQ--ESRVLIFSQMTRMLDILEDYCYW---RGFKYCRLDG--------QTAHEDRQRQINDFNM 122 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~--~~kviIFs~~~~~~~~l~~~l~~---~~~~~~~~~G--------~~~~~~R~~~i~~F~~ 122 (288)
..+|+..|.+.+.+.... +.++|||+.++..++.|..+|.. .|+....+-| +|++.+.++.+++|++
T Consensus 393 ~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~ 472 (746)
T KOG0354|consen 393 ENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD 472 (746)
T ss_pred cChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC
Confidence 578999999988875443 57999999999999999988872 2556555555 5888999999999984
Q ss_pred CCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 123 EGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 123 ~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
+.+.| |++|.+|-+|||+..++-||.||..-||-...||+|| +|.-..+
T Consensus 473 --G~~Nv-LVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns~ 521 (746)
T KOG0354|consen 473 --GEINV-LVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRARNSK 521 (746)
T ss_pred --CCccE-EEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccccCCe
Confidence 55555 8999999999999999999999999999999999999 8875543
No 109
>PRK02362 ski2-like helicase; Provisional
Probab=99.02 E-value=8.2e-10 Score=108.88 Aligned_cols=106 Identities=17% Similarity=0.088 Sum_probs=86.5
Q ss_pred HHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC------------------------------------cEEEEeeCCCC
Q psy10684 66 LLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG------------------------------------FKYCRLDGQTA 109 (288)
Q Consensus 66 ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~------------------------------------~~~~~~~G~~~ 109 (288)
++......+.++||||+.+..++.++..|.... ..+..+||+++
T Consensus 235 ~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~ 314 (737)
T PRK02362 235 LVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLS 314 (737)
T ss_pred HHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCC
Confidence 333334567899999999998888777665321 25678899999
Q ss_pred HHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE----ec-----CCCCcchhhhhhHHHHHHhhh
Q psy10684 110 HEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD-----SDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 110 ~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d-----~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
.++|..+.+.|+ ++.++| |++|++.++|+|++..+.||. || .|.++..+.|++||+||.|..
T Consensus 315 ~~eR~~ve~~Fr--~G~i~V-LvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 315 REHRELVEDAFR--DRLIKV-ISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred HHHHHHHHHHHH--cCCCeE-EEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 999999999998 456666 899999999999999888886 66 467788999999999999875
No 110
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=2.1e-09 Score=104.83 Aligned_cols=146 Identities=11% Similarity=0.054 Sum_probs=117.1
Q ss_pred HHHhhcCCCCCCCCCCCC-CCCCCCcc-ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 27 QLRKCSNHPYLFDGAEPG-PPYTTDEH-LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 27 ~Lrq~~~hP~l~~~~~~~-~~~~~~~~-~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
.|.++.+-+.++-+.... ...+.... +.....|+.++.+.+.++...+..|||||.+....+.|...|...|+++..+
T Consensus 395 Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vL 474 (896)
T PRK13104 395 EFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVL 474 (896)
T ss_pred HHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEee
Confidence 355666666554332211 11111111 2234579999999999889999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccccc--------------------------------------
Q psy10684 105 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATA-------------------------------------- 146 (288)
Q Consensus 105 ~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a-------------------------------------- 146 (288)
||...+.+|+.+.+.|+. +. ++++|+.+|||+|+.-.
T Consensus 475 nak~~q~Ea~iia~Ag~~--G~---VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GG 549 (896)
T PRK13104 475 NAKFHEKEAQIIAEAGRP--GA---VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGG 549 (896)
T ss_pred cCCCChHHHHHHHhCCCC--Cc---EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCC
Confidence 999999999999999983 22 48999999999998833
Q ss_pred ceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 147 DVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 147 ~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
=|||--+.+-+...+.|..||+||-|..|+.
T Consensus 550 L~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 550 LRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 4789999999999999999999999999875
No 111
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.99 E-value=4.7e-10 Score=78.67 Aligned_cols=69 Identities=29% Similarity=0.568 Sum_probs=62.1
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
++.+..++|+++.++|...++.|+ +.. . .+++++.+.+.|+|+..++.|++++++||+....|+++|+-
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~-~~~-~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFN-NGK-I-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHH-cCC-C-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 677889999999999999999998 433 3 66778899999999999999999999999999999999974
No 112
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.98 E-value=2.5e-09 Score=105.53 Aligned_cols=101 Identities=15% Similarity=0.207 Sum_probs=84.5
Q ss_pred CCCeEEEEecchHHHHHHHHHHhh---cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccccccee
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYW---RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV 149 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~---~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~v 149 (288)
.+.++|||++....++.+...|.. .++.++.+||+++.++|.+++..|. ++..+| |++|+++.+||++.++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~--~G~rkV-lvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAP--AGRRKV-VLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhcccc--CCCeEE-EEecchHHhcccccCceEE
Confidence 467899999999999999999987 5889999999999999999999997 334444 8999999999999999999
Q ss_pred EEecCC----CCcc--------------hhhhhhHHHHHHhhhcch
Q psy10684 150 VLYDSD----WNPQ--------------MDLQAMVREAKILRRGSI 177 (288)
Q Consensus 150 i~~d~~----wnp~--------------~~~Qa~~R~~R~Gq~~~v 177 (288)
|+++.+ ++|. .+.||.||+||. +.|..
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~c 332 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGIC 332 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEE
Confidence 997765 3332 578888888887 45543
No 113
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.97 E-value=3e-09 Score=103.59 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=106.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+.++++-+..+.+.|..|||||++....+.+...|...|+++..+|+..+..+|..+.+.|+. +. ++++|+
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~--G~---VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRT--GA---VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCC--Cc---EEEecC
Confidence 4679999999999999999999999999999999999999999999999999999999999999983 33 489999
Q ss_pred cccccccccc-------------------------------------cceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLAT-------------------------------------ADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~-------------------------------------a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||.|+.- .=|||--+.+-+...+.|..||++|-|..|+.
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss 584 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSS 584 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCce
Confidence 9999999883 34899999999999999999999999999875
No 114
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.95 E-value=4.9e-09 Score=97.26 Aligned_cols=110 Identities=19% Similarity=0.320 Sum_probs=95.8
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|+..+..++.... ++.+++||++.......+...+...++ +..++|+++..+|..+++.|+.+. ..+ |+++++
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~--~~~-lv~~~v 341 (442)
T COG1061 267 ERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG--IKV-LVTVKV 341 (442)
T ss_pred HHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC--CCE-EEEeee
Confidence 445555555555433 678999999999999999999998888 889999999999999999998433 444 899999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
+.+|+|++.++.+|+..+.-++..+.|++||+.|.
T Consensus 342 l~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 342 LDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred ccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999995
No 115
>PRK01172 ski2-like helicase; Provisional
Probab=98.90 E-value=5e-09 Score=102.48 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=84.9
Q ss_pred HHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC-------------------------cEEEEeeCCCCHHHHHHHH
Q psy10684 63 LDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG-------------------------FKYCRLDGQTAHEDRQRQI 117 (288)
Q Consensus 63 l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~-------------------------~~~~~~~G~~~~~~R~~~i 117 (288)
+..++.+....+.++|||++....++.++..|.... ..+..+||+++.++|..+.
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 445555555677899999999999888887775431 1356789999999999999
Q ss_pred HhhcCCCCCeeEEEEecccccccccccccceeEEecC---------CCCcchhhhhhHHHHHHhhh
Q psy10684 118 NDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS---------DWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 118 ~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~---------~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
+.|+ ++.++| |++|++.+.|+|++. ..||+.+. +.++..+.|++||+||.|..
T Consensus 305 ~~f~--~g~i~V-LvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d 366 (674)
T PRK01172 305 EMFR--NRYIKV-IVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYD 366 (674)
T ss_pred HHHH--cCCCeE-EEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 9998 455666 899999999999985 57777664 34566788999999999854
No 116
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.86 E-value=1.2e-08 Score=92.32 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=76.8
Q ss_pred chHHHHHHHHHHHH-----hCCCeEEEEecchHHHHHHHHHHhhcC--cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEE
Q psy10684 58 GKMVVLDKLLPKLK-----AQESRVLIFSQMTRMLDILEDYCYWRG--FKYCRLDGQTAHEDRQRQINDFNMEGSDIFIF 130 (288)
Q Consensus 58 ~K~~~l~~ll~~~~-----~~~~kviIFs~~~~~~~~l~~~l~~~~--~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vl 130 (288)
.|...+..+++.+. ..+.|+|||++....++.+...|+..+ +.+..+||.+++.+|.+.. ... +
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~--------~~~-i 321 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM--------QFD-I 321 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc--------cCC-E
Confidence 44555555444432 246799999999999999999999864 6788999999999987653 122 4
Q ss_pred EEecccccccccccccceeEEecCCCCcchhhhhhHHHH
Q psy10684 131 MLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREA 169 (288)
Q Consensus 131 l~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~ 169 (288)
|++|+++++|+|+... .|| ++ |-++..|.||+||++
T Consensus 322 LVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 322 LLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 8999999999999864 666 56 667889999888864
No 117
>PRK09401 reverse gyrase; Reviewed
Probab=98.82 E-value=3.2e-08 Score=101.03 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHH---HHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe-
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRM---LDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS- 133 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~---~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s- 133 (288)
.|...+.++++.+ +.++|||++.... ++.+...|...|+++..+||++ .+.+++|. ++++.||+.+
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~--~G~~~VLVata 384 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFE--EGEVDVLVGVA 384 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHH--CCCCCEEEEec
Confidence 5777777777643 4689999998776 9999999999999999999999 23469997 5666776654
Q ss_pred --cccccccccccc-cceeEEecCCC------CcchhhhhhHHHHHHh
Q psy10684 134 --TRAGGLGINLAT-ADVVVLYDSDW------NPQMDLQAMVREAKIL 172 (288)
Q Consensus 134 --~~~~~~Glnl~~-a~~vi~~d~~w------np~~~~Qa~~R~~R~G 172 (288)
|++++||||++. ..+||||+.|- ....+.++++|+-.+.
T Consensus 385 s~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 385 SYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhhc
Confidence 799999999998 89999999997 5677788888886554
No 118
>PRK00254 ski2-like helicase; Provisional
Probab=98.77 E-value=1.9e-08 Score=99.06 Aligned_cols=108 Identities=15% Similarity=0.038 Sum_probs=80.9
Q ss_pred HHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc---------------------------------CcEEEEeeCCCC
Q psy10684 63 LDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR---------------------------------GFKYCRLDGQTA 109 (288)
Q Consensus 63 l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~G~~~ 109 (288)
+..++.+....+.++|||++.+..++.++..|... ...+..+||+++
T Consensus 227 ~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 227 WESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 34445555556789999999998877665444210 224778999999
Q ss_pred HHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE-------ecCCCC-cchhhhhhHHHHHHhh
Q psy10684 110 HEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL-------YDSDWN-PQMDLQAMVREAKILR 173 (288)
Q Consensus 110 ~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~-------~d~~wn-p~~~~Qa~~R~~R~Gq 173 (288)
.++|..+.+.|+ ++.++| |++|.+.+.|+|++....||. ++.+.- ...+.|++||+||.|.
T Consensus 307 ~~eR~~ve~~F~--~G~i~V-LvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 307 RTERVLIEDAFR--EGLIKV-ITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred HHHHHHHHHHHH--CCCCeE-EEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 999999999998 455666 899999999999998887773 333332 3467999999999763
No 119
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.73 E-value=3.2e-08 Score=100.50 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=79.8
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcE---EEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccccccee
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFK---YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV 149 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~---~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~v 149 (288)
...++|||++....++.+...|...+++ +..+||++++++|.++++.+ +..+| +++|+++.+||++.+.++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g~rkI-IVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----SGRRI-VLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----CCeeE-EEeccHHhhccccCcceEE
Confidence 3468999999999999999999988764 67899999999999886643 33444 8999999999999999999
Q ss_pred EEec---------------CCCCc---chhhhhhHHHHHHhhhcc
Q psy10684 150 VLYD---------------SDWNP---QMDLQAMVREAKILRRGS 176 (288)
Q Consensus 150 i~~d---------------~~wnp---~~~~Qa~~R~~R~Gq~~~ 176 (288)
|+++ .+..| +.+.||.||+||. +.|.
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~ 403 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGI 403 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcE
Confidence 9985 33333 5788999999888 4554
No 120
>PRK09694 helicase Cas3; Provisional
Probab=98.72 E-value=7.5e-08 Score=95.37 Aligned_cols=109 Identities=15% Similarity=0.119 Sum_probs=85.3
Q ss_pred HHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC---cEEEEeeCCCCHHHH----HHHHHhhcCCCC-CeeEEEEec
Q psy10684 63 LDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG---FKYCRLDGQTAHEDR----QRQINDFNMEGS-DIFIFMLST 134 (288)
Q Consensus 63 l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~---~~~~~~~G~~~~~~R----~~~i~~F~~~~~-~~~vll~s~ 134 (288)
+++.+.+....+.+++||++..+.+..+.+.|+..+ .++..+||+++..+| .++++.|..+.. ....+|++|
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaT 628 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVAT 628 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEEC
Confidence 334444444567899999999999999999998764 689999999999999 567889942222 112458999
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
++..+|+|+ .++.+|....| ...+.||+||+||.+..
T Consensus 629 QViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 629 QVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred cchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 999999999 46877776555 56889999999999874
No 121
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.67 E-value=8.6e-08 Score=97.60 Aligned_cols=112 Identities=16% Similarity=0.138 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHh-CCCeEEEEecchHHHHHHHHHHhhcC---cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 59 KMVVLDKLLPKLKA-QESRVLIFSQMTRMLDILEDYCYWRG---FKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 59 K~~~l~~ll~~~~~-~~~kviIFs~~~~~~~~l~~~l~~~~---~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
+...+...+..+.. ...++|||++....++.+...|...+ +.+..+||+++.++|.++++.+ +..+| +++|
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~----~~rkI-VLAT 337 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH----SGRRI-VLAT 337 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC----CCceE-EEec
Confidence 44555666655443 34689999999999999999998764 5688899999999999885443 22344 8999
Q ss_pred ccccccccccccceeEEecCCC------------------CcchhhhhhHHHHHHhhhcc
Q psy10684 135 RAGGLGINLATADVVVLYDSDW------------------NPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~w------------------np~~~~Qa~~R~~R~Gq~~~ 176 (288)
+++.+||++.++.+||.++.+- +-+.+.||.||+||.| .|.
T Consensus 338 NIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~ 396 (1283)
T TIGR01967 338 NVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGI 396 (1283)
T ss_pred cHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-Cce
Confidence 9999999999999999987321 2357789999998887 544
No 122
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.64 E-value=2.3e-08 Score=76.55 Aligned_cols=68 Identities=31% Similarity=0.568 Sum_probs=60.4
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+..+..++|+++..+|...+++|+ ... ..+|+++.+.|.|+|+..++++++++++|++....|+++||
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~f~-~~~--~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~ 119 (131)
T cd00079 52 GIKVAALHGDGSQEEREEVLKDFR-EGE--IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRA 119 (131)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHH-cCC--CcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheeccccc
Confidence 456778999999999999999998 333 45666789999999999999999999999999999999998
No 123
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.62 E-value=1.5e-07 Score=91.66 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC-cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccc
Q psy10684 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG-FKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 138 (288)
Q Consensus 60 ~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~-~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~ 138 (288)
...+.+.+.++.++...++||++.+.+.+.+...|+..+ .+...-||+.+.+.|..+-++|+. ++.++ ++||.+.-
T Consensus 239 ~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~--G~lra-vV~TSSLE 315 (814)
T COG1201 239 WAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE--GELKA-VVATSSLE 315 (814)
T ss_pred hHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc--CCceE-EEEccchh
Confidence 355666777777777799999999999999999999986 899999999999999999999984 44666 88999999
Q ss_pred ccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 139 LGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
.|+|.-..+.||.+.+|-.-+...||+||++.-
T Consensus 316 LGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr 348 (814)
T COG1201 316 LGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHR 348 (814)
T ss_pred hccccCCceEEEEeCCcHHHHHHhHhccccccc
Confidence 999999999999999999999999999998543
No 124
>KOG1123|consensus
Probab=98.58 E-value=7.8e-07 Score=80.87 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=90.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+.+-.-+|+....+++|+|||+...-.+..-+-.| |.+ .+.|.+++.+|.++++.|+ .++.+..+++ ++
T Consensus 525 NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~Kp--fIYG~Tsq~ERm~ILqnFq-~n~~vNTIFl-SK 597 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQNERMKILQNFQ-TNPKVNTIFL-SK 597 (776)
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---CCc--eEECCCchhHHHHHHHhcc-cCCccceEEE-ee
Confidence 677888888888877778999999998766555444443 444 5889999999999999999 6677777444 58
Q ss_pred cccccccccccceeEEecCCCC-cchhhhhhHHHHHHhhhc
Q psy10684 136 AGGLGINLATADVVVLYDSDWN-PQMDLQAMVREAKILRRG 175 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wn-p~~~~Qa~~R~~R~Gq~~ 175 (288)
+|-..++|+.|+.+|......- ...+.||.||+-|..+..
T Consensus 598 VgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~ 638 (776)
T KOG1123|consen 598 VGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRN 638 (776)
T ss_pred ccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcC
Confidence 9999999999999999988764 467789999999887443
No 125
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.56 E-value=5e-08 Score=89.82 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=95.2
Q ss_pred cCchHHHHHHHHHHHHhC----C--CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeE
Q psy10684 56 NSGKMVVLDKLLPKLKAQ----E--SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFI 129 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~----~--~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~v 129 (288)
.+.|++.+..+.+.-... + .+.|||++++..+..|+..|..+|++...||++++..+|..+=..|.. ..+.+
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~--q~l~~ 493 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAA--QELAA 493 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhc--CCcce
Confidence 678999999998863222 2 479999999999999999999999999999999999999999999973 44444
Q ss_pred EEEecccccccccccccceeEEe-----cCCCCcchhhhhhHHHHHHh
Q psy10684 130 FMLSTRAGGLGINLATADVVVLY-----DSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 130 ll~s~~~~~~Glnl~~a~~vi~~-----d~~wnp~~~~Qa~~R~~R~G 172 (288)
+++|.+.+.|+|++ |+.||+= --|.+|..+.|..||+||.+
T Consensus 494 -VVTTAAL~AGVDFP-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 494 -VVTTAALAAGVDFP-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred -EeehhhhhcCCCCc-hHHHHHHHHHcccccCCHHHHHHHhcccCCCC
Confidence 88999999999988 5556542 23569999999999999986
No 126
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.55 E-value=5.8e-07 Score=92.06 Aligned_cols=90 Identities=11% Similarity=0.148 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecch---HHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe--
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMT---RMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS-- 133 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~---~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s-- 133 (288)
+...|.++++.+ +.++|||++.. +.++.|...|...|+++..+||+++ ++.++.|. ++++.||+.+
T Consensus 314 ~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr--~G~~~vLVata~ 384 (1171)
T TIGR01054 314 LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFA--EGEIDVLIGVAS 384 (1171)
T ss_pred HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHH--cCCCCEEEEecc
Confidence 345666666543 56899999998 9999999999999999999999996 36899998 4666776554
Q ss_pred -cccccccccccc-cceeEEecCCCC
Q psy10684 134 -TRAGGLGINLAT-ADVVVLYDSDWN 157 (288)
Q Consensus 134 -~~~~~~Glnl~~-a~~vi~~d~~wn 157 (288)
|++++||||++. .++|||||+|-.
T Consensus 385 ~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 385 YYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred ccCcccccCCCCccccEEEEECCCCE
Confidence 699999999998 899999998843
No 127
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.50 E-value=4.9e-07 Score=79.18 Aligned_cols=145 Identities=19% Similarity=0.308 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCCC---CCCCCCCCccccccCchHHHHHHHHHHH-----HhCCCeEEEEecchHHHHH
Q psy10684 18 KMRLQNILMQLRKCSNHPYLFDGAE---PGPPYTTDEHLVFNSGKMVVLDKLLPKL-----KAQESRVLIFSQMTRMLDI 89 (288)
Q Consensus 18 ~~~~~~~l~~Lrq~~~hP~l~~~~~---~~~~~~~~~~~~~~s~K~~~l~~ll~~~-----~~~~~kviIFs~~~~~~~~ 89 (288)
...+-.++.+|+.+|+||+|+-+.. ........++..+.|+|+..|-+++..+ ...+-+++|.++...++|.
T Consensus 53 ~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldl 132 (297)
T PF11496_consen 53 VQSMELLIENLRLVANHPSLLVDHYMPKQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDL 132 (297)
T ss_dssp -HHHHHHHHHHHHHHH-GGGT--TT--S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHH
T ss_pred HHHHHHHHHHHHHhccCccccccccCccccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHH
Confidence 3567888899999999999965432 1122333445677999999999999998 5556799999999999999
Q ss_pred HHHHHhhcCcEEEEeeCCCCHHHHHHHH------------Hhhc-CCCCCeeEEEEecccccc----cccccccceeEEe
Q psy10684 90 LEDYCYWRGFKYCRLDGQTAHEDRQRQI------------NDFN-MEGSDIFIFMLSTRAGGL----GINLATADVVVLY 152 (288)
Q Consensus 90 l~~~l~~~~~~~~~~~G~~~~~~R~~~i------------~~F~-~~~~~~~vll~s~~~~~~----Glnl~~a~~vi~~ 152 (288)
++..|.-.++.+-++.|..-..+....- .... .....+.+.|++++-... .++-...+-||-|
T Consensus 133 lE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsf 212 (297)
T PF11496_consen 133 LEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISF 212 (297)
T ss_dssp HHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-
T ss_pred HHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEe
Confidence 9999999999999999987555443322 0010 123456677777664433 2344477899999
Q ss_pred cCCCCcchhh
Q psy10684 153 DSDWNPQMDL 162 (288)
Q Consensus 153 d~~wnp~~~~ 162 (288)
|+.+++....
T Consensus 213 D~~~d~~~p~ 222 (297)
T PF11496_consen 213 DPSFDTSLPS 222 (297)
T ss_dssp SST--TTSHH
T ss_pred cCCCCCCChH
Confidence 9999987654
No 128
>KOG0351|consensus
Probab=98.50 E-value=1.9e-07 Score=92.60 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=93.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
..+...||||....+++.+...|...|+....||++++..+|+.+...|.. .+++| ++.|=|-|.|+|-.++.-||+
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~--~~~~V-ivATVAFGMGIdK~DVR~ViH 559 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMS--DKIRV-IVATVAFGMGIDKPDVRFVIH 559 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhc--CCCeE-EEEEeeccCCCCCCceeEEEE
Confidence 346789999999999999999999999999999999999999999999983 34555 888999999999999999999
Q ss_pred ecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 152 YDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 152 ~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
|..|-+-.-|-|.+||+||-|+...
T Consensus 560 ~~lPks~E~YYQE~GRAGRDG~~s~ 584 (941)
T KOG0351|consen 560 YSLPKSFEGYYQEAGRAGRDGLPSS 584 (941)
T ss_pred CCCchhHHHHHHhccccCcCCCcce
Confidence 9999999999999999999998754
No 129
>PRK14701 reverse gyrase; Provisional
Probab=98.43 E-value=1e-06 Score=92.53 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEecchHH---HHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec---
Q psy10684 61 VVLDKLLPKLKAQESRVLIFSQMTRM---LDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST--- 134 (288)
Q Consensus 61 ~~l~~ll~~~~~~~~kviIFs~~~~~---~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~--- 134 (288)
..+.++++. .+...||||+.... ++.+...|...|+++..+||+ |.+.++.|. ++++.| |++|
T Consensus 320 ~~L~~ll~~---~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~--~G~~~V-LVaT~s~ 388 (1638)
T PRK14701 320 EHVRELLKK---LGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFE--EGEIDY-LIGVATY 388 (1638)
T ss_pred HHHHHHHHh---CCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHH--cCCCCE-EEEecCC
Confidence 456666654 35789999998764 589999999999999999994 889999998 455566 5555
Q ss_pred -ccccccccccc-cceeEEecCCC---Ccchhhhhh-------------HHHHHHhhh
Q psy10684 135 -RAGGLGINLAT-ADVVVLYDSDW---NPQMDLQAM-------------VREAKILRR 174 (288)
Q Consensus 135 -~~~~~Glnl~~-a~~vi~~d~~w---np~~~~Qa~-------------~R~~R~Gq~ 174 (288)
+++++|||++. ..+||+|+.|- +...|.|.. +|++|-|..
T Consensus 389 ~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 389 YGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred CCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 68999999997 99999999998 766666655 777777744
No 130
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.38 E-value=2e-06 Score=87.64 Aligned_cols=96 Identities=14% Similarity=0.163 Sum_probs=79.7
Q ss_pred CCeEEEEecchHHHHHHHHHHhhc------Cc---EEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccc
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWR------GF---KYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA 144 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~------~~---~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~ 144 (288)
+.|.||||.....++.+...|... ++ .+..++|+++ ++.+++++|++ +....++++++....|+|.+
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~--~~~p~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN--ERLPNIVVTVDLLTTGIDVP 773 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC--CCCCeEEEEecccccCCCcc
Confidence 369999999999988888776542 22 4567899985 67889999983 33334588999999999999
Q ss_pred ccceeEEecCCCCcchhhhhhHHHHHHhh
Q psy10684 145 TADVVVLYDSDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 145 ~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq 173 (288)
.+++|++++++-++..+.|++||+-|..-
T Consensus 774 ~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 774 SICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred cccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 99999999999999999999999999743
No 131
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.32 E-value=2.3e-06 Score=80.68 Aligned_cols=88 Identities=20% Similarity=0.284 Sum_probs=68.2
Q ss_pred HHHHHHHHhhc--CcEEEEeeCCCCHHHH--HHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCC--CC-c-
Q psy10684 87 LDILEDYCYWR--GFKYCRLDGQTAHEDR--QRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD--WN-P- 158 (288)
Q Consensus 87 ~~~l~~~l~~~--~~~~~~~~G~~~~~~R--~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~--wn-p- 158 (288)
.+.+++.|... +.++.++|+.++..++ +++++.|.++ +..| |+.|+..++|+|+..++.|+.+|.+ .+ |
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g--~~~I-LVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG--KADI-LIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC--CCCE-EEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 47777888776 7899999999877665 8999999843 4444 8899999999999999999765544 33 3
Q ss_pred --------chhhhhhHHHHHHhhhcch
Q psy10684 159 --------QMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 159 --------~~~~Qa~~R~~R~Gq~~~v 177 (288)
..+.|+.||++|.+..+.|
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~v 374 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQV 374 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEE
Confidence 3568999999997665543
No 132
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.31 E-value=3.5e-06 Score=82.04 Aligned_cols=145 Identities=12% Similarity=0.059 Sum_probs=109.1
Q ss_pred HHHhhcCCCCCCCCCCCC-CCCCCCcc-ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 27 QLRKCSNHPYLFDGAEPG-PPYTTDEH-LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 27 ~Lrq~~~hP~l~~~~~~~-~~~~~~~~-~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
.|.++.+.+.++-+.-.. -..+.... +.....|+.++++-+.+....+..|||.|.+....+.|...|...|+++..+
T Consensus 377 Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vL 456 (925)
T PRK12903 377 EFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVL 456 (925)
T ss_pred HHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceee
Confidence 456666666655432221 11111111 2234589999999999888899999999999999999999999999999999
Q ss_pred eCCCCHHHHHH-HHHhhcCCCCCeeEEEEecccccccccccccc--------eeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 105 DGQTAHEDRQR-QINDFNMEGSDIFIFMLSTRAGGLGINLATAD--------VVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 105 ~G~~~~~~R~~-~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~--------~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
+.... +++. ++.+= +...-+.++|..+|||-|+.-.. |||..+.+-+...+.|..||++|.|..|
T Consensus 457 NAk~~--e~EA~IIa~A----G~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 457 NAKQN--AREAEIIAKA----GQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred cccch--hhHHHHHHhC----CCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCC
Confidence 98753 3333 44322 22223578999999999988554 9999999999999999999999999999
Q ss_pred ch
Q psy10684 176 SI 177 (288)
Q Consensus 176 ~v 177 (288)
+.
T Consensus 531 ss 532 (925)
T PRK12903 531 ES 532 (925)
T ss_pred cc
Confidence 75
No 133
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.24 E-value=4.9e-05 Score=74.52 Aligned_cols=220 Identities=14% Similarity=0.108 Sum_probs=129.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHH----hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYC----YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l----~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.|+|..+....+......+.+++|-+.....+......+ ...|+++..++|+++..+|.+.+..... +.+.|++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~--g~~~IvV 369 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS--GEADIVI 369 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC--CCCCEEE
Confidence 789998655544444566889999999988877665544 4447999999999999999999998863 3445544
Q ss_pred EecccccccccccccceeEEecCC-------------------------CCcchhhhhhHHHHH----------Hhhhcc
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSD-------------------------WNPQMDLQAMVREAK----------ILRRGS 176 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~-------------------------wnp~~~~Qa~~R~~R----------~Gq~~~ 176 (288)
.+...-...+.+.....||+=+-+ ..|.... ....+. .|+ .+
T Consensus 370 gT~~ll~~~v~~~~l~lvVIDE~Hrfg~~qr~~l~~~~~~~~iL~~SATp~prtl~--~~~~g~~~~s~i~~~p~~r-~~ 446 (681)
T PRK10917 370 GTHALIQDDVEFHNLGLVIIDEQHRFGVEQRLALREKGENPHVLVMTATPIPRTLA--MTAYGDLDVSVIDELPPGR-KP 446 (681)
T ss_pred chHHHhcccchhcccceEEEechhhhhHHHHHHHHhcCCCCCEEEEeCCCCHHHHH--HHHcCCCceEEEecCCCCC-CC
Confidence 443333334445555544443221 1111100 000000 000 00
Q ss_pred h---------HHHHHHHhhhhccccchhhhhhccCCCc---------ccccc----cchhhhcccCCCccccchhHHHhh
Q psy10684 177 I---------KKALEAKMSRYRAPFHQLRIAYGANKGK---------NYTEE----EDRYLYCRLDGQTAHEDRQRQIND 234 (288)
Q Consensus 177 v---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~e~----~~gi~~~~l~G~~~~~~R~~~i~~ 234 (288)
+ ...+.+.+.+.....+++.+....-... ...+. -.++....++|+++.++|++++++
T Consensus 447 i~~~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~ 526 (681)
T PRK10917 447 ITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAA 526 (681)
T ss_pred cEEEEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHH
Confidence 1 0111122222222233333222110000 00000 113567889999999999999999
Q ss_pred cccCCCCeeEEEEeecccccCCCccccceEEEeCCCC-Chhhhhhhhhhh
Q psy10684 235 FNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVRT 283 (288)
Q Consensus 235 f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w-np~~~~Qa~~Ra 283 (288)
|. +.+.. +|+++..-+.|+|+..++.||+++++. .-+--.|..+|+
T Consensus 527 F~--~g~~~-ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRv 573 (681)
T PRK10917 527 FK--AGEID-ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRV 573 (681)
T ss_pred HH--cCCCC-EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcc
Confidence 98 44555 456778999999999999999999884 345556888886
No 134
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.23 E-value=8.7e-06 Score=78.22 Aligned_cols=148 Identities=14% Similarity=0.066 Sum_probs=109.8
Q ss_pred HHHHhhcCCCCCCCCCCCCC-CCCCCcc-ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEE
Q psy10684 26 MQLRKCSNHPYLFDGAEPGP-PYTTDEH-LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCR 103 (288)
Q Consensus 26 ~~Lrq~~~hP~l~~~~~~~~-~~~~~~~-~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~ 103 (288)
..|+++.+-+.++-++-... ..+.... +.....|+.++.+-+....+.+..|||.+.+...-+.|...|...|+++..
T Consensus 377 ~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~v 456 (764)
T PRK12326 377 EQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVV 456 (764)
T ss_pred HHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCccee
Confidence 34667776665543322111 1111111 223457999999999988899999999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccc---------------cceeEEecCCCCcchhhhhhHHH
Q psy10684 104 LDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT---------------ADVVVLYDSDWNPQMDLQAMVRE 168 (288)
Q Consensus 104 ~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~---------------a~~vi~~d~~wnp~~~~Qa~~R~ 168 (288)
++.... ++-.+++.+=- .+ ..+-++|.-+|||-|+.- .=|||-.+.+-+...+.|..||+
T Consensus 457 LNAk~~-~~EA~IIa~AG--~~--gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRa 531 (764)
T PRK12326 457 LNAKND-AEEARIIAEAG--KY--GAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRA 531 (764)
T ss_pred eccCch-HhHHHHHHhcC--CC--CcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhccc
Confidence 998754 33344555432 22 224789999999988873 34899999999999999999999
Q ss_pred HHHhhhcchH
Q psy10684 169 AKILRRGSIK 178 (288)
Q Consensus 169 ~R~Gq~~~v~ 178 (288)
+|.|..|+..
T Consensus 532 GRQGDpGss~ 541 (764)
T PRK12326 532 GRQGDPGSSV 541 (764)
T ss_pred ccCCCCCcee
Confidence 9999999863
No 135
>KOG0953|consensus
Probab=98.19 E-value=5.8e-06 Score=76.19 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=78.0
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVV 150 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi 150 (288)
..|+-+|.||. ..+-.+...++.+|.. ++.++|+.+++.|.+--..||++++++.| |+.++|-|.||||. ..+||
T Consensus 356 k~GDCvV~FSk--k~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSK--KDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeeh--hhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeecccccccccc-eeEEE
Confidence 34677888874 4555667777777766 99999999999999999999988888888 77889999999986 78899
Q ss_pred EecCCC---------CcchhhhhhHHHHHHhhh
Q psy10684 151 LYDSDW---------NPQMDLQAMVREAKILRR 174 (288)
Q Consensus 151 ~~d~~w---------np~~~~Qa~~R~~R~Gq~ 174 (288)
+++..- ..+.-.|-.||+||.|..
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 987641 123335788999999754
No 136
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.17 E-value=1.3e-06 Score=84.75 Aligned_cols=67 Identities=21% Similarity=0.400 Sum_probs=59.6
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC-Chhhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVRTV 284 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w-np~~~~Qa~~Ra~ 284 (288)
...++|+++..+|.+++++|+ ..+.+.++++| ++|+.|++++.|+.||++++++ ++..+.|.++|+.
T Consensus 518 ~~~I~G~ts~~ER~~il~~Fr-~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRil 585 (732)
T TIGR00603 518 KPFIYGPTSQQERMQILQNFQ-HNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRIL 585 (732)
T ss_pred CceEECCCCHHHHHHHHHHHH-hCCCccEEEEe-cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccc
Confidence 456899999999999999998 56677777776 9999999999999999999886 9999999999973
No 137
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.15 E-value=5.3e-05 Score=71.17 Aligned_cols=220 Identities=14% Similarity=0.164 Sum_probs=132.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.|+|--+. ++..+. .+..+||.+...+.+......|...|++...++|..+..++..++.... .+...++++++.
T Consensus 36 GsGKTl~y--~lp~l~-~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~--~~~~~il~~TPe 110 (470)
T TIGR00614 36 GGGKSLCY--QLPALC-SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLK--DGKIKLLYVTPE 110 (470)
T ss_pred CCcHhHHH--HHHHHH-cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh--cCCCCEEEECHH
Confidence 57886532 222222 3457899999988877777788888999999999999888888888775 445667777766
Q ss_pred cccccc-------cccccceeEEecCC----CCcchh--hhhhHHHHHHh-------hhcchHHHHHHHhhhhcc-----
Q psy10684 136 AGGLGI-------NLATADVVVLYDSD----WNPQMD--LQAMVREAKIL-------RRGSIKKALEAKMSRYRA----- 190 (288)
Q Consensus 136 ~~~~Gl-------nl~~a~~vi~~d~~----wnp~~~--~Qa~~R~~R~G-------q~~~v~~~i~~~~~~~~~----- 190 (288)
...... .+.....+|+=+.+ |..... ...++...+.- -+.+....+...+.+...
T Consensus 111 ~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~ 190 (470)
T TIGR00614 111 KCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQ 190 (470)
T ss_pred HHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCc
Confidence 433322 23344555544433 432111 11222222211 011111111111111000
Q ss_pred ----------------------------------ccchhhhhhccCCC-ccccc--ccchhhhcccCCCccccchhHHHh
Q psy10684 191 ----------------------------------PFHQLRIAYGANKG-KNYTE--EEDRYLYCRLDGQTAHEDRQRQIN 233 (288)
Q Consensus 191 ----------------------------------~~~~~~~~~~~~~~-~~~~e--~~~gi~~~~l~G~~~~~~R~~~i~ 233 (288)
.....+++...... ..+.+ ...|+....++|+++.++|.+..+
T Consensus 191 ~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~ 270 (470)
T TIGR00614 191 IFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHH 270 (470)
T ss_pred EEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHH
Confidence 00000000000000 00000 123677788999999999999999
Q ss_pred hcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 234 DFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 234 ~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+|. +..+.|+ +++.+.|.|+|+...+.||+++++.++....|.++||
T Consensus 271 ~F~--~g~~~vL-VaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRa 317 (470)
T TIGR00614 271 KFQ--RDEIQVV-VATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRA 317 (470)
T ss_pred HHH--cCCCcEE-EEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCc
Confidence 998 5555655 5668999999999999999999999999999999998
No 138
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.13 E-value=7.3e-05 Score=72.74 Aligned_cols=222 Identities=14% Similarity=0.140 Sum_probs=127.5
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHh----hcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCY----WRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~----~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.|+|..+....+......+.+++|-+.....+..+...+. ..|+++..++|+++..+|...++.... +++.|++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~--g~~~IiV 343 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS--GQIHLVV 343 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC--CCCCEEE
Confidence 7899986554444445667899999998888776665544 347999999999999999988888863 3444544
Q ss_pred EecccccccccccccceeEEec----------------------------CCCCcchhhhhh-HH-------HHHHhhhc
Q psy10684 132 LSTRAGGLGINLATADVVVLYD----------------------------SDWNPQMDLQAM-VR-------EAKILRRG 175 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d----------------------------~~wnp~~~~Qa~-~R-------~~R~Gq~~ 175 (288)
.+.......+.+.....||+=+ ....|....... +. .-..|+ .
T Consensus 344 gT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r-~ 422 (630)
T TIGR00643 344 GTHALIQEKVEFKRLALVIIDEQHRFGVEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGR-K 422 (630)
T ss_pred ecHHHHhccccccccceEEEechhhccHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCC-C
Confidence 4433333334444444444332 221121110000 00 000000 0
Q ss_pred ch---------HHHHHHHhhhhccccchhhhhhccCCC-c--------c----cccccchhhhcccCCCccccchhHHHh
Q psy10684 176 SI---------KKALEAKMSRYRAPFHQLRIAYGANKG-K--------N----YTEEEDRYLYCRLDGQTAHEDRQRQIN 233 (288)
Q Consensus 176 ~v---------~~~i~~~~~~~~~~~~~~~~~~~~~~~-~--------~----~~e~~~gi~~~~l~G~~~~~~R~~~i~ 233 (288)
++ ...+.+.+.+.....+++++....... . . +.+.-.++....++|+++.++|.++++
T Consensus 423 ~i~~~~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~ 502 (630)
T TIGR00643 423 PITTVLIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVME 502 (630)
T ss_pred ceEEEEeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHH
Confidence 00 011111111111112222222111000 0 0 000012556788999999999999999
Q ss_pred hcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC-Chhhhhhhhhhh
Q psy10684 234 DFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVRT 283 (288)
Q Consensus 234 ~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w-np~~~~Qa~~Ra 283 (288)
+|. +.... +|+++..-+.|+|+..++.||+++++. .-+.-.|..+||
T Consensus 503 ~F~--~g~~~-ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRv 550 (630)
T TIGR00643 503 EFR--EGEVD-ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRV 550 (630)
T ss_pred HHH--cCCCC-EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhc
Confidence 998 44444 455678999999999999999999884 445566888887
No 139
>KOG0352|consensus
Probab=98.12 E-value=2.6e-06 Score=76.11 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=87.7
Q ss_pred EEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCC
Q psy10684 77 VLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW 156 (288)
Q Consensus 77 viIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~w 156 (288)
-||||..++.++.++-.|...||+...+|.+....+|..+-+.|.. +++.| ++.|.+-|.|+|-+.+..||+.+++-
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~--~~~Pv-I~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMN--NEIPV-IAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhc--CCCCE-EEEEeccccccCCcceeEEEecCchh
Confidence 5999999999999999999999999999999999999999999984 34444 88899999999999999999999999
Q ss_pred CcchhhhhhHHHHHHhhh
Q psy10684 157 NPQMDLQAMVREAKILRR 174 (288)
Q Consensus 157 np~~~~Qa~~R~~R~Gq~ 174 (288)
|-+-|-|--||+||-|..
T Consensus 335 n~AgYYQESGRAGRDGk~ 352 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKR 352 (641)
T ss_pred hhHHHHHhccccccCCCc
Confidence 999999999999999854
No 140
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.10 E-value=1.7e-05 Score=77.59 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=67.7
Q ss_pred HHHHHHHHhhc--CcEEEEeeCCCC--HHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCC--CCc--
Q psy10684 87 LDILEDYCYWR--GFKYCRLDGQTA--HEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD--WNP-- 158 (288)
Q Consensus 87 ~~~l~~~l~~~--~~~~~~~~G~~~--~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~--wnp-- 158 (288)
.+.+++.|... +.++..+||.+. .++++++++.|.++ ++.| |+.|+..++|+|++.++.|+.+|.+ .+.
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g--~~~I-LVgT~~iakG~d~p~v~lV~il~aD~~l~~pd 515 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG--EADI-LIGTQMLAKGHDFPNVTLVGVLDADLGLFSPD 515 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC--CCCE-EEEChhhccCCCCCCcCEEEEEcCchhccCCc
Confidence 45777777775 788999999986 46789999999843 4444 7899999999999999999777654 332
Q ss_pred --------chhhhhhHHHHHHhhhcc
Q psy10684 159 --------QMDLQAMVREAKILRRGS 176 (288)
Q Consensus 159 --------~~~~Qa~~R~~R~Gq~~~ 176 (288)
..+.|+.||++|.+..+.
T Consensus 516 fra~Er~~~~l~q~~GRagR~~~~g~ 541 (679)
T PRK05580 516 FRASERTFQLLTQVAGRAGRAEKPGE 541 (679)
T ss_pred cchHHHHHHHHHHHHhhccCCCCCCE
Confidence 457899999999665544
No 141
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.09 E-value=0.0001 Score=68.49 Aligned_cols=69 Identities=19% Similarity=0.365 Sum_probs=61.6
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++..+|...++.|. ++.+.|++ ++...+.|+++...++||.+|+++++....|.++||
T Consensus 268 ~~~~~~~l~g~~~~~~R~~~l~~f~--~G~~~vLV-aTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~ 336 (434)
T PRK11192 268 AGINCCYLEGEMVQAKRNEAIKRLT--DGRVNVLV-ATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRT 336 (434)
T ss_pred CCCCEEEecCCCCHHHHHHHHHHHh--CCCCcEEE-EccccccCccCCCCCEEEEECCCCCHHHHhhccccc
Confidence 4678889999999999999999998 55666555 558889999999999999999999999999999998
No 142
>PTZ00110 helicase; Provisional
Probab=98.08 E-value=7.1e-05 Score=71.54 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=61.4
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+++++|. +..+.| |+++.+.+.|+++...++||.+|+++++....|.++|+
T Consensus 400 ~g~~~~~ihg~~~~~eR~~il~~F~--~G~~~I-LVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRt 468 (545)
T PTZ00110 400 DGWPALCIHGDKKQEERTWVLNEFK--TGKSPI-MIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRT 468 (545)
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHh--cCCCcE-EEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 3667788999999999999999998 444454 66779999999999999999999999999999999998
No 143
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.07 E-value=4.9e-05 Score=70.03 Aligned_cols=110 Identities=21% Similarity=0.270 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc
Q psy10684 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL 139 (288)
Q Consensus 60 ~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~ 139 (288)
++=|+.-++...+.+++++|-+-...|.+-|..+|...|+++..+|+....-+|.+++...+. +...| |+-.+...+
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~--G~~Dv-LVGINLLRE 508 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL--GEFDV-LVGINLLRE 508 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc--CCccE-EEeehhhhc
Confidence 333444444445678999999999999999999999999999999999999999999999983 44455 788999999
Q ss_pred cccccccceeEEecCC-----CCcchhhhhhHHHHHHh
Q psy10684 140 GINLATADVVVLYDSD-----WNPQMDLQAMVREAKIL 172 (288)
Q Consensus 140 Glnl~~a~~vi~~d~~-----wnp~~~~Qa~~R~~R~G 172 (288)
|||++.++-|.++|.+ -+.....|-|||+.|--
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~ 546 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 546 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhcc
Confidence 9999999999999965 45667889999999964
No 144
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.04 E-value=0.0001 Score=69.06 Aligned_cols=69 Identities=17% Similarity=0.400 Sum_probs=60.9
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|++++.+|+++++.|. +....|+ +++...+.|+++...++||.+|.+.++....|.++|+
T Consensus 265 ~~~~v~~~hg~~~~~eR~~~l~~F~--~g~~~vL-VaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRt 333 (460)
T PRK11776 265 QGFSALALHGDLEQRDRDQVLVRFA--NRSCSVL-VATDVAARGLDIKALEAVINYELARDPEVHVHRIGRT 333 (460)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHH--cCCCcEE-EEecccccccchhcCCeEEEecCCCCHhHhhhhcccc
Confidence 3567778899999999999999998 4555554 5668999999999999999999999999999999997
No 145
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.02 E-value=0.00019 Score=69.46 Aligned_cols=221 Identities=15% Similarity=0.182 Sum_probs=128.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..++|--+.. +..+. .+..++|.+.....+.--...|...|+++..++|..+..++..+..... .+.+.++++++
T Consensus 37 TG~GKTl~y~--lpal~-~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~--~~~~~il~~tp 111 (591)
T TIGR01389 37 TGGGKSLCYQ--VPALL-LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALV--NGELKLLYVAP 111 (591)
T ss_pred CCccHhHHHH--HHHHH-cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh--CCCCCEEEECh
Confidence 3578876532 22222 3456788899888877677788888999999999999999888888776 34556666655
Q ss_pred ccccc-----cccccccceeEEecC----CCCcch--hhhhhHHHHHHhhhc-----------chHHHHHHHhhh-----
Q psy10684 135 RAGGL-----GINLATADVVVLYDS----DWNPQM--DLQAMVREAKILRRG-----------SIKKALEAKMSR----- 187 (288)
Q Consensus 135 ~~~~~-----Glnl~~a~~vi~~d~----~wnp~~--~~Qa~~R~~R~Gq~~-----------~v~~~i~~~~~~----- 187 (288)
..... -+.....+.+|+=|. .|.... ....++.....-... .+...+...+.-
T Consensus 112 e~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~ 191 (591)
T TIGR01389 112 ERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANE 191 (591)
T ss_pred hHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCe
Confidence 43211 112223333333222 232211 111222221111000 111111111100
Q ss_pred hc----------------cc------------cchhhhhhccCCC-ccccc--ccchhhhcccCCCccccchhHHHhhcc
Q psy10684 188 YR----------------AP------------FHQLRIAYGANKG-KNYTE--EEDRYLYCRLDGQTAHEDRQRQINDFN 236 (288)
Q Consensus 188 ~~----------------~~------------~~~~~~~~~~~~~-~~~~e--~~~gi~~~~l~G~~~~~~R~~~i~~f~ 236 (288)
+. .. ....+++...... ..+.+ ...|+....++|+++.++|..+++.|.
T Consensus 192 ~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~ 271 (591)
T TIGR01389 192 FITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFL 271 (591)
T ss_pred EecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 00 00 0000111000000 00000 123666788999999999999999998
Q ss_pred cCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 237 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 237 ~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
...+. +|+++.+.|.|+|....+.||++++++++....|.++||
T Consensus 272 --~g~~~-vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRa 315 (591)
T TIGR01389 272 --YDDVK-VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRA 315 (591)
T ss_pred --cCCCc-EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccc
Confidence 33444 566779999999999999999999999999999999998
No 146
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.01 E-value=0.00022 Score=68.53 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=61.3
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++..+|.++++.|. +..+.| |+++.+.+.|+++...++||.||.+|++....|.++||
T Consensus 280 ~g~~v~~lhg~l~~~eR~~il~~Fr--~G~~~V-LVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRa 348 (572)
T PRK04537 280 HGYRVGVLSGDVPQKKRESLLNRFQ--KGQLEI-LVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRT 348 (572)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHH--cCCCeE-EEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhccc
Confidence 3677889999999999999999998 455555 45668899999999999999999999999999999998
No 147
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.00 E-value=0.00016 Score=72.66 Aligned_cols=220 Identities=11% Similarity=0.056 Sum_probs=130.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.|+|..+....+-.....+.+++|.+..+..+......+.. .+++...++|..+..++.+.++.... +++.+++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~--g~~dIVI 559 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS--GKIDILI 559 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc--CCceEEE
Confidence 68999876655444445678999999999988887776654 36788899999999899888888873 3455655
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc--------hHHH-----------------------
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS--------IKKA----------------------- 180 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~--------v~~~----------------------- 180 (288)
.+.......+.+.....+|+=+-+- -. ..|. .+...++.... ...+
T Consensus 560 GTp~ll~~~v~f~~L~llVIDEahr-fg-v~~~-~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~ 636 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLIIDEEQR-FG-VKQK-EKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLP 636 (926)
T ss_pred chHHHhhCCCCcccCCEEEeecccc-cc-hhHH-HHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccc
Confidence 5554444455666666655533211 00 0010 01101110000 0000
Q ss_pred ------------HHHHhhhhccccchhhhhhccCCCccc-ccc--c--chhhhcccCCCccccchhHHHhhcccCCCCee
Q psy10684 181 ------------LEAKMSRYRAPFHQLRIAYGANKGKNY-TEE--E--DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIF 243 (288)
Q Consensus 181 ------------i~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~--~--~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~ 243 (288)
+.+.+.+......++++........+. .+. . .++....++|.|+.++|.+++.+|. +....
T Consensus 637 V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~--~Gk~~ 714 (926)
T TIGR00580 637 VRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFY--KGEFQ 714 (926)
T ss_pred eEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHH--cCCCC
Confidence 000111000111112111111100000 000 1 2456778999999999999999998 44444
Q ss_pred EEEEeecccccCCCccccceEEEeCCCC-Chhhhhhhhhhh
Q psy10684 244 IFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVRT 283 (288)
Q Consensus 244 v~l~s~~agg~glnl~~a~~v~~~d~~w-np~~~~Qa~~Ra 283 (288)
+|+++..-+.|+++..++.||+++.+. .-+.-.|.++|+
T Consensus 715 -ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRv 754 (926)
T TIGR00580 715 -VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRV 754 (926)
T ss_pred -EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCC
Confidence 556778999999999999999998872 334456999986
No 148
>KOG0383|consensus
Probab=97.98 E-value=4e-06 Score=80.28 Aligned_cols=94 Identities=29% Similarity=0.370 Sum_probs=77.4
Q ss_pred hhhhhHHHHHHhh---hcch-HHHHHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHh
Q psy10684 161 DLQAMVREAKILR---RGSI-KKALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQIN 233 (288)
Q Consensus 161 ~~Qa~~R~~R~Gq---~~~v-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~ 233 (288)
++|...+.-+.|. +-.- ...+..++.++...+|++.+++++..+.++.|+ ..+ .|.++||..+...|+.+|+
T Consensus 596 ~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~ 674 (696)
T KOG0383|consen 596 EEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAID 674 (696)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhcc
Confidence 5666555555543 3332 456677788889999999999999999998886 345 8999999999999999999
Q ss_pred hcccCCCCeeEEEEeecccccC
Q psy10684 234 DFNMEGSDIFIFMLSTRAGGLG 255 (288)
Q Consensus 234 ~f~~~~~~~~v~l~s~~agg~g 255 (288)
+||..++.-++||+|++|||+|
T Consensus 675 ~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 675 RFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred ccCCCCccceEEEeecccccCC
Confidence 9998888899999999999998
No 149
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.97 E-value=6.1e-05 Score=74.37 Aligned_cols=146 Identities=12% Similarity=0.069 Sum_probs=107.1
Q ss_pred HHHhhcCCCCCCCCCCCC-CCCCCCccc-cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 27 QLRKCSNHPYLFDGAEPG-PPYTTDEHL-VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 27 ~Lrq~~~hP~l~~~~~~~-~~~~~~~~~-~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
.|.++.+-+.+.-+.-.. ...+..... .....|..++.+-+......+..|||-|.+...-+.|...|...|+++..+
T Consensus 519 Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vL 598 (970)
T PRK12899 519 EFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVL 598 (970)
T ss_pred HHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceec
Confidence 456666665554332221 111111122 223579999999999888999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccc--------cceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 105 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT--------ADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 105 ~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~--------a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+.... ++-..++..=. .+ ..+-++|.-+|||-|+.- .=|||.-+.+-|+..+.|..||++|-|..|+
T Consensus 599 Nak~~-~~Ea~iia~AG--~~--g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGs 673 (970)
T PRK12899 599 NAKNH-AQEAEIIAGAG--KL--GAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGA 673 (970)
T ss_pred ccchh-hhHHHHHHhcC--CC--CcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCc
Confidence 88743 22224444332 22 224789999999988763 3489999999999999999999999999998
Q ss_pred h
Q psy10684 177 I 177 (288)
Q Consensus 177 v 177 (288)
.
T Consensus 674 s 674 (970)
T PRK12899 674 A 674 (970)
T ss_pred e
Confidence 4
No 150
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.93 E-value=4.2e-05 Score=76.23 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=97.2
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHH----HHHhhcC----cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeE
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILE----DYCYWRG----FKYCRLDGQTAHEDRQRQINDFNMEGSDIFI 129 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~----~~l~~~~----~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~v 129 (288)
++...+..++..+..++-|.|+|+.+...++.+. ..+...+ .....++|++..++|.++...|+.+ +..+
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g--~~~~ 367 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG--ELLG 367 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC--CccE
Confidence 6777788888888889999999999999999886 3444444 5678899999999999999999844 3334
Q ss_pred EEEecccccccccccccceeEEecCCC-CcchhhhhhHHHHHHhhhc
Q psy10684 130 FMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 130 ll~s~~~~~~Glnl~~a~~vi~~d~~w-np~~~~Qa~~R~~R~Gq~~ 175 (288)
+++|.+.-.|+++...+-||....|- .-....|+.||++|-+|..
T Consensus 368 -~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~ 413 (851)
T COG1205 368 -VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES 413 (851)
T ss_pred -EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc
Confidence 89999999999999999999999987 5688899999999999654
No 151
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.93 E-value=0.00026 Score=67.37 Aligned_cols=69 Identities=14% Similarity=0.289 Sum_probs=61.7
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|..+++.|. +..+.| |+++.+.+-|+|+...++||.+|++.++....|.++||
T Consensus 391 ~g~~~~~~Hg~~~~~eR~~il~~Fr--~G~~~I-LVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRa 459 (518)
T PLN00206 391 TGLKALSIHGEKSMKERREVMKSFL--VGEVPV-IVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRA 459 (518)
T ss_pred cCcceEEeeCCCCHHHHHHHHHHHH--CCCCCE-EEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhcccc
Confidence 4677888999999999999999998 455565 56778999999999999999999999999999999998
No 152
>PRK10689 transcription-repair coupling factor; Provisional
Probab=97.87 E-value=0.00023 Score=73.16 Aligned_cols=219 Identities=14% Similarity=0.105 Sum_probs=128.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc----CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR----GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.++|....+..+......+.+++|-+..+..+..+...+... ++.+..++|..+.+++.+.+.... .+.+.|++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~--~g~~dIVV 708 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAA--EGKIDILI 708 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHH--hCCCCEEE
Confidence 689998655444444456789999999999888777666542 567788999999999998888876 33456666
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch--------HHHHH---------------------
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI--------KKALE--------------------- 182 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v--------~~~i~--------------------- 182 (288)
.+.......+.+.....+|+=+-+-= . ..| ..+...+.....+ ..+..
T Consensus 709 gTp~lL~~~v~~~~L~lLVIDEahrf-G-~~~-~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~ 785 (1147)
T PRK10689 709 GTHKLLQSDVKWKDLGLLIVDEEHRF-G-VRH-KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 (1147)
T ss_pred ECHHHHhCCCCHhhCCEEEEechhhc-c-hhH-HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCC
Confidence 66554444455555555544321100 0 000 0011111100000 00000
Q ss_pred --------------HH-hhhhccccchhhhhhccCCCcc-cccc--c--chhhhcccCCCccccchhHHHhhcccCCCCe
Q psy10684 183 --------------AK-MSRYRAPFHQLRIAYGANKGKN-YTEE--E--DRYLYCRLDGQTAHEDRQRQINDFNMEGSDI 242 (288)
Q Consensus 183 --------------~~-~~~~~~~~~~~~~~~~~~~~~~-~~e~--~--~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~ 242 (288)
+. +.++. ...+++++.......+ +.+. + .+.....++|+|+.++|.+++.+|. +..+
T Consensus 786 v~~~~~~~~~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr--~Gk~ 862 (1147)
T PRK10689 786 VKTFVREYDSLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH--HQRF 862 (1147)
T ss_pred ceEEEEecCcHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHH--hcCC
Confidence 00 00110 0111211111100000 0010 1 1456778899999999999999998 4555
Q ss_pred eEEEEeecccccCCCccccceEEEeCCC-CChhhhhhhhhhh
Q psy10684 243 FIFMLSTRAGGLGINLATADVVVLYDSD-WNPQMDLQAMVRT 283 (288)
Q Consensus 243 ~v~l~s~~agg~glnl~~a~~v~~~d~~-wnp~~~~Qa~~Ra 283 (288)
.| |+++...+.|+++..+++||+.+++ +.-+.-.|-.+|+
T Consensus 863 ~V-LVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRv 903 (1147)
T PRK10689 863 NV-LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 (1147)
T ss_pred CE-EEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhcc
Confidence 55 5566899999999999999998776 5666677999986
No 153
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.84 E-value=0.00011 Score=69.95 Aligned_cols=117 Identities=12% Similarity=0.117 Sum_probs=89.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHH--------HHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCC
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLD--------ILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGS 125 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~--------~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~ 125 (288)
.-.+...+.+.+.+-..+|+++-+-|.-.+.-+ .+...|+.. ++....+||+|+.+++++++.+|++ +
T Consensus 455 ~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~--~ 532 (677)
T COG1200 455 PHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKE--G 532 (677)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHc--C
Confidence 446667777777766678899988887665433 333445432 6678899999999999999999984 3
Q ss_pred CeeEEEEecccccccccccccceeEEecCC-CCcchhhhhhHHHHHHhhhc
Q psy10684 126 DIFIFMLSTRAGGLGINLATADVVVLYDSD-WNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 126 ~~~vll~s~~~~~~Glnl~~a~~vi~~d~~-wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
++.| |++|.+--+|+|+++|+.+|+.+.. +--+...|--||+||-+.+.
T Consensus 533 e~~I-LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qS 582 (677)
T COG1200 533 EIDI-LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQS 582 (677)
T ss_pred CCcE-EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcce
Confidence 4444 8999999999999999999999875 34566678889999876553
No 154
>PRK13766 Hef nuclease; Provisional
Probab=97.81 E-value=1.7e-05 Score=79.14 Aligned_cols=69 Identities=19% Similarity=0.366 Sum_probs=58.2
Q ss_pred chhhhcccCCC--------ccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQ--------TAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~--------~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....+.|. ++..+|.+++++|+ . ....+ |+++.+++.|+|+..+++||+|||+|||....|.++|+
T Consensus 388 ~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~-~-g~~~v-LvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~ 464 (773)
T PRK13766 388 EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFR-A-GEFNV-LVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRT 464 (773)
T ss_pred CCCceEEEEccccccccCCCCHHHHHHHHHHHH-c-CCCCE-EEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 35666677775 78889999999998 3 34554 56778999999999999999999999999999999987
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.79 E-value=8.3e-05 Score=73.86 Aligned_cols=117 Identities=13% Similarity=0.145 Sum_probs=97.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++++-+..+...|..|||-+.+.+.-+.|...|...|+++-.++......+ .+++.+=. ..+. +-++|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~E-AeIVA~AG-~~Ga---VTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKE-AEIVAEAG-QPGT---VTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhH-HHHHHhcC-CCCc---EEEecc
Confidence 467999999999999999999999999999999999999999999988888754222 33444332 2222 478999
Q ss_pred ccccccccc--------ccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLA--------TADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~--------~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
-+|||-|+. +.=|||--+.+-+...+.|..||++|-|..|+.
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS 734 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSS 734 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcc
Confidence 999998887 567899999999999999999999999999875
No 156
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.79 E-value=9.5e-05 Score=72.87 Aligned_cols=146 Identities=12% Similarity=0.078 Sum_probs=108.4
Q ss_pred HHHhhcCCCCCCCCCCCC-CCCCCCcc-ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 27 QLRKCSNHPYLFDGAEPG-PPYTTDEH-LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 27 ~Lrq~~~hP~l~~~~~~~-~~~~~~~~-~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
.|.++.+-+.++-+.... ...+.... +.....|+.++++-++.+.+.|..|||-+.+...-+.|...|...|+++-.+
T Consensus 400 Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VL 479 (913)
T PRK13103 400 EFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVL 479 (913)
T ss_pred HHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHh
Confidence 466666666654432221 11111111 2335679999999999999999999999999999999999999999999888
Q ss_pred eCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccc-------------------------------------ccc
Q psy10684 105 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA-------------------------------------TAD 147 (288)
Q Consensus 105 ~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~-------------------------------------~a~ 147 (288)
+.... ++-.+++.+= +.++ .+-++|.-+|||-|+. +.=
T Consensus 480 NAk~~-~~EA~IIa~A--G~~G--aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGL 554 (913)
T PRK13103 480 NAKYH-EKEAEIIAQA--GRPG--ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGL 554 (913)
T ss_pred ccccc-hhHHHHHHcC--CCCC--cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCC
Confidence 87654 3333444432 2222 2478999999999886 344
Q ss_pred eeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 148 VVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 148 ~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
|||--+.+-|...+.|..||++|-|..|+.
T Consensus 555 hVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 555 HVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred EEEeeccCchHHHHHHhccccccCCCCCce
Confidence 899999999999999999999999999875
No 157
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.77 E-value=0.0012 Score=64.09 Aligned_cols=69 Identities=17% Similarity=0.348 Sum_probs=61.4
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++..+|.+.++.|. +..+. +|+++...+.|+++...++||.||++.++....|.++|+
T Consensus 268 ~g~~~~~lhgd~~q~~R~~il~~Fr--~G~~~-ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRt 336 (629)
T PRK11634 268 NGYNSAALNGDMNQALREQTLERLK--DGRLD-ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRT 336 (629)
T ss_pred CCCCEEEeeCCCCHHHHHHHHHHHh--CCCCC-EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 4677788999999999999999998 44444 566779999999999999999999999999999999997
No 158
>KOG0329|consensus
Probab=97.77 E-value=1.9e-05 Score=66.27 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=44.1
Q ss_pred EEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 131 MLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 131 l~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++|+.-|+|+++...|.|||||.|-++..|.++.+|++|.|-++-.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkgla 348 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 348 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccce
Confidence 67889999999999999999999999999999999999999988753
No 159
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=97.77 E-value=0.00086 Score=65.04 Aligned_cols=220 Identities=15% Similarity=0.218 Sum_probs=126.2
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..++|--+. ++..+.. +..+||.+.....+......|...|+....+++..+.+++........ .+...++++++
T Consensus 49 TGsGKTl~y--~lpal~~-~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~--~g~~~il~~tP 123 (607)
T PRK11057 49 TGGGKSLCY--QIPALVL-DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCR--TGQIKLLYIAP 123 (607)
T ss_pred CCchHHHHH--HHHHHHc-CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHh--CCCCcEEEECh
Confidence 368886532 2222222 357888999888877777788888999999999998888877777765 34455666554
Q ss_pred ccccc-----cccccccceeEEecC----CCCcch--hhhhhHHHHHHhh-------hcc----hHHHHHHHhhhhcc--
Q psy10684 135 RAGGL-----GINLATADVVVLYDS----DWNPQM--DLQAMVREAKILR-------RGS----IKKALEAKMSRYRA-- 190 (288)
Q Consensus 135 ~~~~~-----Glnl~~a~~vi~~d~----~wnp~~--~~Qa~~R~~R~Gq-------~~~----v~~~i~~~~~~~~~-- 190 (288)
..... .+.....+.+|+=+. .|.... ....++...+.-. +.+ +...+...+. +..
T Consensus 124 e~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~-l~~~~ 202 (607)
T PRK11057 124 ERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLG-LNDPL 202 (607)
T ss_pred HHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhC-CCCeE
Confidence 43221 111112233333221 232111 1122332221110 001 1111111110 000
Q ss_pred --------------------ccchh------------hhhhccCCC-ccccc--ccchhhhcccCCCccccchhHHHhhc
Q psy10684 191 --------------------PFHQL------------RIAYGANKG-KNYTE--EEDRYLYCRLDGQTAHEDRQRQINDF 235 (288)
Q Consensus 191 --------------------~~~~~------------~~~~~~~~~-~~~~e--~~~gi~~~~l~G~~~~~~R~~~i~~f 235 (288)
....+ +++...... ..+.+ ...|+....++|+++.++|.++.++|
T Consensus 203 ~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F 282 (607)
T PRK11057 203 IQISSFDRPNIRYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAF 282 (607)
T ss_pred EEECCCCCCcceeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHH
Confidence 00000 000000000 00000 12356778899999999999999999
Q ss_pred ccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 236 NMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 236 ~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
. ...+.|+ +++.+.|.|+|+...+.||.+|++.++..-.|.++||
T Consensus 283 ~--~g~~~VL-VaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRa 327 (607)
T PRK11057 283 Q--RDDLQIV-VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRA 327 (607)
T ss_pred H--CCCCCEE-EEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhc
Confidence 8 4455554 5668889999999999999999999999999999999
No 160
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.77 E-value=0.00025 Score=71.60 Aligned_cols=70 Identities=20% Similarity=0.090 Sum_probs=62.3
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
..|+....++|+++.++|..+.++|. ...+.|+ +.+.+.|.|+++..-+.||.++.+.++...-|-++||
T Consensus 702 ~~Gika~~YHAGLs~eeR~~vqe~F~--~Gei~VL-VATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRA 771 (1195)
T PLN03137 702 EFGHKAAFYHGSMDPAQRAFVQKQWS--KDEINII-CATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRA 771 (1195)
T ss_pred HCCCCeeeeeCCCCHHHHHHHHHHHh--cCCCcEE-EEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhccc
Confidence 34788889999999999999999998 4555655 5668999999999999999999999999999999999
No 161
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00025 Score=62.15 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc
Q psy10684 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL 139 (288)
Q Consensus 62 ~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~ 139 (288)
.|...|+..+.++..++||....++++.+...|+.. ......+|+.. ..|.+.+.+|+ ++...+ |++|...-|
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR--~G~~~l-LiTTTILER 367 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFR--DGKITL-LITTTILER 367 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHH--cCceEE-EEEeehhhc
Confidence 567778877788899999999999999999999543 33445666655 68999999998 444444 899999999
Q ss_pred cccccccceeEEecCC--CCcchhhhhhHHHHHHh
Q psy10684 140 GINLATADVVVLYDSD--WNPQMDLQAMVREAKIL 172 (288)
Q Consensus 140 Glnl~~a~~vi~~d~~--wnp~~~~Qa~~R~~R~G 172 (288)
|.+++..+..++-... +..+...|-.||+||--
T Consensus 368 GVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 368 GVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSL 402 (441)
T ss_pred ccccccceEEEecCCcccccHHHHHHHhhhccCCC
Confidence 9999999987776554 67778889889888864
No 162
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.57 E-value=6.4e-05 Score=69.66 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=61.5
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|+....++|+++.++|.+.+++|+ +.++.| |+++.+.+-|+++...++||.||+++++....|.++||
T Consensus 278 ~g~~v~~lhg~~~~~~R~~~l~~F~--~g~~~v-LVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~ 346 (423)
T PRK04837 278 DGHRVGLLTGDVAQKKRLRILEEFT--RGDLDI-LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRT 346 (423)
T ss_pred CCCcEEEecCCCChhHHHHHHHHHH--cCCCcE-EEEechhhcCCCccccCEEEEeCCCCchhheEeccccc
Confidence 4677889999999999999999998 455554 55668999999999999999999999999999999997
No 163
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.53 E-value=0.0008 Score=66.22 Aligned_cols=115 Identities=9% Similarity=0.050 Sum_probs=79.6
Q ss_pred HHHHhhcCCCCCCCCCCCCC-CCCCCcccc-ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEE
Q psy10684 26 MQLRKCSNHPYLFDGAEPGP-PYTTDEHLV-FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCR 103 (288)
Q Consensus 26 ~~Lrq~~~hP~l~~~~~~~~-~~~~~~~~~-~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~ 103 (288)
..|+++.+-+.++-++-... ..+....++ ....|+.++.+-+......+..|||-|.+.+.-+.|...|...|+++-.
T Consensus 374 ~Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~v 453 (870)
T CHL00122 374 LEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQL 453 (870)
T ss_pred HHHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccce
Confidence 34666776666654332221 112222222 2346999999988888899999999999999999999999999999999
Q ss_pred eeCCCCH-HHHHHHHHhhcCCCCCeeEEEEeccccccccccc
Q psy10684 104 LDGQTAH-EDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA 144 (288)
Q Consensus 104 ~~G~~~~-~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~ 144 (288)
++..... ++-.+++.+= +.++ -+-++|.-+|||-|+.
T Consensus 454 LNAk~~~~~~EA~IIA~A--G~~G--~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 454 LNAKPENVRRESEIVAQA--GRKG--SITIATNMAGRGTDII 491 (870)
T ss_pred eeCCCccchhHHHHHHhc--CCCC--cEEEeccccCCCcCee
Confidence 9987432 3334455543 2222 2478999999997765
No 164
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.52 E-value=0.00037 Score=68.93 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=80.9
Q ss_pred HHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCC-CCCeeEEEEecccccccccc
Q psy10684 65 KLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNME-GSDIFIFMLSTRAGGLGINL 143 (288)
Q Consensus 65 ~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~-~~~~~vll~s~~~~~~Glnl 143 (288)
..+......+.|++|-++.+..+..+...|+..+.+++.+||++...+|.+.++....- ..+...++++|.+--.|+|+
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 33334456678999999999999999999998887899999999999999888855421 12223358999999999998
Q ss_pred cccceeEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 144 ATADVVVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 144 ~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
. . .+.+-|+. -.....||.||++|-|..
T Consensus 511 d-f-d~mITe~a-PidSLIQR~GRv~R~g~~ 538 (733)
T COG1203 511 D-F-DVLITELA-PIDSLIQRAGRVNRHGKK 538 (733)
T ss_pred c-c-CeeeecCC-CHHHHHHHHHHHhhcccc
Confidence 7 3 33344432 235678999999999943
No 165
>KOG0298|consensus
Probab=97.52 E-value=3.8e-05 Score=76.88 Aligned_cols=91 Identities=24% Similarity=0.231 Sum_probs=70.6
Q ss_pred hhhccccchhhhhhccCCCcccccccc---hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccc
Q psy10684 186 SRYRAPFHQLRIAYGANKGKNYTEEED---RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATAD 262 (288)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~e~~~---gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~ 262 (288)
.+......++++++++....+..+... ++. ...+|+ .++-+.++..|. .+.++|+-...|+-||||+-|-
T Consensus 1215 iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~-~~~~~~--t~d~~dc~~~fk----~I~clll~~~~~~~GLNL~eA~ 1287 (1394)
T KOG0298|consen 1215 IKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIK-KQLDGE--TEDFDDCIICFK----SIDCLLLFVSKGSKGLNLIEAT 1287 (1394)
T ss_pred HhccCcCceEEEEEehHHHHHHHHHHHHhhhhH-hhhccC--Ccchhhhhhhcc----cceEEEEEeccCcccccHHhhh
Confidence 444556677777777777666666532 333 344555 346677788887 3778899999999999999999
Q ss_pred eEEEeCCCCChhhhhhhhhhh
Q psy10684 263 VVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 263 ~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
||++++|--||+.|.||++|.
T Consensus 1288 Hvfl~ePiLN~~~E~QAigRv 1308 (1394)
T KOG0298|consen 1288 HVFLVEPILNPGDEAQAIGRV 1308 (1394)
T ss_pred hhheeccccCchHHHhhhhhh
Confidence 999999999999999999998
No 166
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.49 E-value=7.4e-05 Score=64.48 Aligned_cols=60 Identities=17% Similarity=0.275 Sum_probs=47.5
Q ss_pred HHHHhhcCCCCCeeEEEEecccccccccccccc--------eeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 115 RQINDFNMEGSDIFIFMLSTRAGGLGINLATAD--------VVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 115 ~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~--------~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
...+.|++ +...|+++ +++|+.|+.|+.-. .-|.+++||+.....|-.||+||.||..+.
T Consensus 52 ~e~~~F~~--g~k~v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P 119 (278)
T PF13871_consen 52 AEKQAFMD--GEKDVAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAP 119 (278)
T ss_pred HHHHHHhC--CCceEEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCC
Confidence 45679983 44556555 59999999999432 346889999999999999999999998653
No 167
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.40 E-value=0.00018 Score=67.79 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=61.0
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++.++|.+.++.|. +..+.+ |+++.+.+.|+++...++||++|+++++....|.++||
T Consensus 359 ~~~~~~~~g~~~~~~R~~~~~~Fr--~G~~~v-LvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRa 426 (475)
T PRK01297 359 GINAAQLSGDVPQHKRIKTLEGFR--EGKIRV-LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRT 426 (475)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHh--CCCCcE-EEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCcc
Confidence 677788999999999999999998 445554 55679999999999999999999999999999999998
No 168
>KOG0331|consensus
Probab=97.40 E-value=0.0054 Score=57.38 Aligned_cols=219 Identities=15% Similarity=0.240 Sum_probs=127.3
Q ss_pred cCchHH-HHHHHHHHHHh--------CCCeEEEEecchHHHHHHHHHHhhc----CcEEEEeeCCCCHHHHHHHHHhhcC
Q psy10684 56 NSGKMV-VLDKLLPKLKA--------QESRVLIFSQMTRMLDILEDYCYWR----GFKYCRLDGQTAHEDRQRQINDFNM 122 (288)
Q Consensus 56 ~s~K~~-~l~~ll~~~~~--------~~~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~~G~~~~~~R~~~i~~F~~ 122 (288)
.|+|.- +++-.+..+.. .+..+||-+..++....++..+... ++..+.++|+.+.....+.++
T Consensus 138 GSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~---- 213 (519)
T KOG0331|consen 138 GSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE---- 213 (519)
T ss_pred CCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----
Confidence 577754 45555555443 2568999999999999999887665 455778888887665544443
Q ss_pred CCCCeeEEEEecc-----cccccccccccceeEEecCC------CCcchh--hhhhHHHHH-------------------
Q psy10684 123 EGSDIFIFMLSTR-----AGGLGINLATADVVVLYDSD------WNPQMD--LQAMVREAK------------------- 170 (288)
Q Consensus 123 ~~~~~~vll~s~~-----~~~~Glnl~~a~~vi~~d~~------wnp~~~--~Qa~~R~~R------------------- 170 (288)
.++.|++.++. .-.--++|..++++++=+.+ +-|... ...+.|..|
T Consensus 214 --~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~ 291 (519)
T KOG0331|consen 214 --RGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAED 291 (519)
T ss_pred --cCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHH
Confidence 23344333322 11123456666666654322 111110 011111111
Q ss_pred ---------Hhhhc------chH------------HHHHHHhhhhc-cccchhhhhhccCCCcccccc---cchhhhccc
Q psy10684 171 ---------ILRRG------SIK------------KALEAKMSRYR-APFHQLRIAYGANKGKNYTEE---EDRYLYCRL 219 (288)
Q Consensus 171 ---------~Gq~~------~v~------------~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l 219 (288)
+|-.. .+. ..+.+.+..+. ....+++++-.....-+..+. ..+|...-|
T Consensus 292 fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~i 371 (519)
T KOG0331|consen 292 FLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAI 371 (519)
T ss_pred HhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeee
Confidence 01000 000 11111111111 122234444333322222221 235788899
Q ss_pred CCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 220 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 220 ~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+|+.++.+|+..+..|. +....| |+.+..++=||++..-++||.||++=|....-+.++|-
T Consensus 372 HGd~sQ~eR~~~L~~Fr--eG~~~v-LVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRT 432 (519)
T KOG0331|consen 372 HGDKSQSERDWVLKGFR--EGKSPV-LVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRT 432 (519)
T ss_pred cccccHHHHHHHHHhcc--cCCcce-EEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCcc
Confidence 99999999999999998 444454 45668888999999999999999999998888888874
No 169
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.32 E-value=0.0072 Score=60.00 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=59.3
Q ss_pred hhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 214 i~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.....+.|++++++|.++.++|. +..++ .|+++.+.+.|+++...+.||++|.+-++..-.|.++||
T Consensus 304 ~~v~~~hgg~~~~eR~~ie~~f~--~G~i~-vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRa 370 (742)
T TIGR03817 304 ERVAAYRAGYLPEDRRELERALR--DGELL-GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRA 370 (742)
T ss_pred cchhheecCCCHHHHHHHHHHHH--cCCce-EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhcccc
Confidence 34567899999999999999998 55555 467889999999999999999999999999999999998
No 170
>KOG0330|consensus
Probab=97.26 E-value=0.0027 Score=56.60 Aligned_cols=219 Identities=16% Similarity=0.140 Sum_probs=127.6
Q ss_pred cCchHH-HHHHHHHHHHhCC--CeEEEEecchHHHHHHHHHHhhc----CcEEEEeeCCCCHHHHHHHHHhhcCCCCCee
Q psy10684 56 NSGKMV-VLDKLLPKLKAQE--SRVLIFSQMTRMLDILEDYCYWR----GFKYCRLDGQTAHEDRQRQINDFNMEGSDIF 128 (288)
Q Consensus 56 ~s~K~~-~l~~ll~~~~~~~--~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~ 128 (288)
.|+|.- +++-+|..+..+. -.++|-+..++....|.+.++.. |+.++.+-|++.. +......++ .+ .
T Consensus 108 GSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m--~~q~~~L~k--kP--h 181 (476)
T KOG0330|consen 108 GSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDM--MLQANQLSK--KP--H 181 (476)
T ss_pred CCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchH--HHHHHHhhc--CC--C
Confidence 688876 4566777766553 47999999999998888877665 7899999999953 444566665 23 3
Q ss_pred EEEEecccc------cccccccccceeEEecCCCCc-chhhhhhHHHHHH---h-h--------------------hcch
Q psy10684 129 IFMLSTRAG------GLGINLATADVVVLYDSDWNP-QMDLQAMVREAKI---L-R--------------------RGSI 177 (288)
Q Consensus 129 vll~s~~~~------~~Glnl~~a~~vi~~d~~wnp-~~~~Qa~~R~~R~---G-q--------------------~~~v 177 (288)
+++.++... ..|.+|....+.++=+.+-=- ..+.--.+.+-+. + | +.++
T Consensus 182 ilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~ 261 (476)
T KOG0330|consen 182 ILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPV 261 (476)
T ss_pred EEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCe
Confidence 445444332 346666555554442211000 0001111111111 1 1 1111
Q ss_pred H----------HHHHHHhhhhcc--------------ccchhhhhhccCCC---cccccccchhhhcccCCCccccchhH
Q psy10684 178 K----------KALEAKMSRYRA--------------PFHQLRIAYGANKG---KNYTEEEDRYLYCRLDGQTAHEDRQR 230 (288)
Q Consensus 178 ~----------~~i~~~~~~~~~--------------~~~~~~~~~~~~~~---~~~~e~~~gi~~~~l~G~~~~~~R~~ 230 (288)
+ .++......... ....++++...-.. ..+.-...|+....++|.|+++.|-.
T Consensus 262 ~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg 341 (476)
T KOG0330|consen 262 KVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLG 341 (476)
T ss_pred EEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHH
Confidence 1 111111000000 00111111111111 11222455888899999999999999
Q ss_pred HHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 231 QINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 231 ~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
..+.|+ +..+.| |+.+..|+=||+.+.++.||.||-+-+-...-+.++|.
T Consensus 342 ~l~~Fk--~~~r~i-Lv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRt 391 (476)
T KOG0330|consen 342 ALNKFK--AGARSI-LVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRT 391 (476)
T ss_pred HHHHHh--ccCCcE-EEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccc
Confidence 999998 444444 55669999999999999999999997777776776664
No 171
>KOG0353|consensus
Probab=97.24 E-value=0.00094 Score=59.28 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=93.8
Q ss_pred cCchHHHHHHHHHHHHhC--CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 56 NSGKMVVLDKLLPKLKAQ--ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~--~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
++.--+.+.++.+.+... |..-||||-+...++.+...|+.+||..-.+|..+.+++|..+-..|- .+++.| ++.
T Consensus 297 p~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~--a~eiqv-iva 373 (695)
T KOG0353|consen 297 PGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWI--AGEIQV-IVA 373 (695)
T ss_pred CCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccc--ccceEE-EEE
Confidence 344455555555544332 678899999999999999999999999999999999999999998886 566666 778
Q ss_pred cccccccccccccceeEEecCCCCcchhhhhhHHHH
Q psy10684 134 TRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREA 169 (288)
Q Consensus 134 ~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~ 169 (288)
|-+-|.|++-+++..||+-..|-+-..|-||-.|+.
T Consensus 374 tvafgmgidkpdvrfvihhsl~ksienyyqasaril 409 (695)
T KOG0353|consen 374 TVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARIL 409 (695)
T ss_pred EeeecccCCCCCeeEEEecccchhHHHHHHHHHHHH
Confidence 889999999999999999999999999999988863
No 172
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=97.22 E-value=0.00031 Score=65.78 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=61.0
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+.+++|. +..+.|+ +++.+.+.|+++...++||+||++.++....|.++||
T Consensus 268 ~g~~~~~lhg~~~~~~R~~~l~~F~--~g~~~iL-VaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRa 336 (456)
T PRK10590 268 DGIRSAAIHGNKSQGARTRALADFK--SGDIRVL-VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRT 336 (456)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH--cCCCcEE-EEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhcccc
Confidence 3667788999999999999999998 4555655 5668999999999999999999999999999999998
No 173
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.22 E-value=0.00075 Score=66.65 Aligned_cols=110 Identities=21% Similarity=0.136 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh---c---------------C-------------------cEE
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW---R---------------G-------------------FKY 101 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~---~---------------~-------------------~~~ 101 (288)
+.....+++....+.+..++||++++......+..+.. . . ...
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 34566677777778899999999999988887777762 0 0 123
Q ss_pred EEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEe-----c-----CCCCcchhhhhhHHHHHH
Q psy10684 102 CRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLY-----D-----SDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 102 ~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~-----d-----~~wnp~~~~Qa~~R~~R~ 171 (288)
..-|.+++.++|+-+=+.|+ .+.++| |++|.+.+.|+||+ |.+||.- + -+-++-.+.|..||+||.
T Consensus 318 afHhAGL~~~~R~~vE~~Fr--~g~ikV-lv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRP 393 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFR--KGKIKV-LVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRP 393 (766)
T ss_pred cccccCCCHHHHHHHHHHHh--cCCceE-EEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCC
Confidence 45678899999999999997 677777 88999999999999 4455543 3 233456778999999999
Q ss_pred h
Q psy10684 172 L 172 (288)
Q Consensus 172 G 172 (288)
|
T Consensus 394 g 394 (766)
T COG1204 394 G 394 (766)
T ss_pred C
Confidence 8
No 174
>KOG4150|consensus
Probab=97.20 E-value=0.0014 Score=61.24 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=91.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc----C----cEEEEeeCCCCHHHHHHHHHh-hcCCCCC
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR----G----FKYCRLDGQTAHEDRQRQIND-FNMEGSD 126 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~----~----~~~~~~~G~~~~~~R~~~i~~-F~~~~~~ 126 (288)
.++|+.....++.++...+-++|-||..+..++.+....+.- + -....+.|+.+.++|.++-.. |. ++
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~---G~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG---GK 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC---Ce
Confidence 567787888888888889999999999999988776443322 1 123467899988888877654 54 33
Q ss_pred eeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhh
Q psy10684 127 IFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 127 ~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq 173 (288)
.+- +++|.+...|+++...+-|+....|.+-+...|-.||+||-..
T Consensus 584 L~g-iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 584 LCG-IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred eeE-EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC
Confidence 333 7899999999999999999999999999999999999998754
No 175
>PTZ00424 helicase 45; Provisional
Probab=97.10 E-value=0.00049 Score=63.16 Aligned_cols=69 Identities=17% Similarity=0.360 Sum_probs=61.2
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|...++.|. +..+.| |+++...+.|+|+...+.||++|++.++..-.|.++||
T Consensus 290 ~~~~~~~~h~~~~~~~R~~i~~~f~--~g~~~v-LvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRa 358 (401)
T PTZ00424 290 RDFTVSCMHGDMDQKDRDLIMREFR--SGSTRV-LITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRS 358 (401)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHH--cCCCCE-EEEcccccCCcCcccCCEEEEECCCCCHHHEeeccccc
Confidence 3567888999999999999999998 455554 56778999999999999999999999999999999998
No 176
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.06 E-value=0.004 Score=62.92 Aligned_cols=101 Identities=12% Similarity=0.135 Sum_probs=82.5
Q ss_pred HhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccce
Q psy10684 71 KAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV 148 (288)
Q Consensus 71 ~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~ 148 (288)
..+|.+|-.-.+-.+.+..+...|+.. ...+...||.|+..+-++++..|.+ +...| |+||..---|+|+++||+
T Consensus 800 l~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~--g~~dV-Lv~TTIIEtGIDIPnANT 876 (1139)
T COG1197 800 LLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN--GEYDV-LVCTTIIETGIDIPNANT 876 (1139)
T ss_pred HhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc--CCCCE-EEEeeeeecCcCCCCCce
Confidence 455668877788888899888888775 6678899999999999999999984 44445 888899999999999999
Q ss_pred eEEecCC-CCcchhhhhhHHHHHHhhh
Q psy10684 149 VVLYDSD-WNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 149 vi~~d~~-wnp~~~~Qa~~R~~R~Gq~ 174 (288)
+|.-+.+ +--+..-|--||+||-.++
T Consensus 877 iIIe~AD~fGLsQLyQLRGRVGRS~~~ 903 (1139)
T COG1197 877 IIIERADKFGLAQLYQLRGRVGRSNKQ 903 (1139)
T ss_pred EEEeccccccHHHHHHhccccCCccce
Confidence 9998765 3446667888888888765
No 177
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=97.01 E-value=0.0068 Score=57.72 Aligned_cols=201 Identities=18% Similarity=0.254 Sum_probs=127.9
Q ss_pred eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc------------c-cc
Q psy10684 76 RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL------------G-IN 142 (288)
Q Consensus 76 kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~------------G-ln 142 (288)
-+||-|.-...+.-=...|..+|+..+.+++..+.++|..++.+.. .+.++++.+++.-..- + +-
T Consensus 59 ~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~--~g~~klLyisPErl~~~~f~~~L~~~~i~l~v 136 (590)
T COG0514 59 LTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLK--SGQLKLLYISPERLMSPRFLELLKRLPISLVA 136 (590)
T ss_pred CEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHh--cCceeEEEECchhhcChHHHHHHHhCCCceEE
Confidence 6778888777666666778889999999999999999999999997 5677888888653221 1 11
Q ss_pred ccccceeEEecCCCCcchhhhhhHHHHHHhh-----------hcchHHHHHHHh---------------------hhhcc
Q psy10684 143 LATADVVVLYDSDWNPQMDLQAMVREAKILR-----------RGSIKKALEAKM---------------------SRYRA 190 (288)
Q Consensus 143 l~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq-----------~~~v~~~i~~~~---------------------~~~~~ 190 (288)
+..|+.|--...+|-|+ | .++|+.+..-. +..+...|.+.+ .....
T Consensus 137 IDEAHCiSqWGhdFRP~-Y-~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~ 214 (590)
T COG0514 137 IDEAHCISQWGHDFRPD-Y-RRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGE 214 (590)
T ss_pred echHHHHhhcCCccCHh-H-HHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhccc
Confidence 22455554444455553 2 23444333211 111111111111 00000
Q ss_pred ccchh-hhh--------------hccCCCccccc--ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccc
Q psy10684 191 PFHQL-RIA--------------YGANKGKNYTE--EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 253 (288)
Q Consensus 191 ~~~~~-~~~--------------~~~~~~~~~~e--~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg 253 (288)
...+. .+. .......++.+ ...|+....++|+++.++|...-++|. ..+..|+ +.+.|=|
T Consensus 215 ~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~--~~~~~ii-VAT~AFG 291 (590)
T COG0514 215 PSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFL--NDEIKVM-VATNAFG 291 (590)
T ss_pred HHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHh--cCCCcEE-EEecccc
Confidence 01111 000 00011111111 134788999999999999999999998 4455554 4669999
Q ss_pred cCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 254 LGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 254 ~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|+|-..--.||++|++=+..-.-|=++||
T Consensus 292 MGIdKpdVRfViH~~lP~s~EsYyQE~GRA 321 (590)
T COG0514 292 MGIDKPDVRFVIHYDLPGSIESYYQETGRA 321 (590)
T ss_pred CccCCCCceEEEEecCCCCHHHHHHHHhhc
Confidence 999999999999999999999999999999
No 178
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=96.92 E-value=0.011 Score=62.09 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=57.7
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
....+|+++.++|..+.+.|. +..++ .|+++.+...|+|+...+.||.++.+.+.+.-.|.++||
T Consensus 304 a~~HHGsLSkeeR~~IE~~fK--~G~Lr-vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRA 368 (1490)
T PRK09751 304 ARSHHGSVSKEQRAITEQALK--SGELR-CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRA 368 (1490)
T ss_pred eeeccccCCHHHHHHHHHHHH--hCCce-EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCC
Confidence 346789999999999999998 55666 455669999999999999999999999999999999998
No 179
>PHA02558 uvsW UvsW helicase; Provisional
Probab=96.89 E-value=0.0011 Score=62.92 Aligned_cols=70 Identities=19% Similarity=0.153 Sum_probs=62.1
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.++++.|. +....|++.|...-|.|+++...++||++.|.-++....|.++|+
T Consensus 367 ~g~~v~~i~G~~~~~eR~~i~~~~~--~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~ 436 (501)
T PHA02558 367 VYDKVYYVSGEVDTEDRNEMKKIAE--GGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRV 436 (501)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHh--CCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhcc
Confidence 3677888999999999999888887 455667777779999999999999999999999999999999998
No 180
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.00084 Score=63.75 Aligned_cols=219 Identities=15% Similarity=0.237 Sum_probs=131.8
Q ss_pred ccCchHH-HHHHHHHHHH--hCCCe--EEEEecchHHHHHHHHHHhhc-----CcEEEEeeCCCCHHHHHHHHHhhcCCC
Q psy10684 55 FNSGKMV-VLDKLLPKLK--AQESR--VLIFSQMTRMLDILEDYCYWR-----GFKYCRLDGQTAHEDRQRQINDFNMEG 124 (288)
Q Consensus 55 ~~s~K~~-~l~~ll~~~~--~~~~k--viIFs~~~~~~~~l~~~l~~~-----~~~~~~~~G~~~~~~R~~~i~~F~~~~ 124 (288)
..|+|.. +++-+|+.+. ..... +||.+..++.+..+...+... ++.++.+.|+++...+...++.
T Consensus 75 TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~----- 149 (513)
T COG0513 75 TGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR----- 149 (513)
T ss_pred CCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-----
Confidence 3688876 4566777755 23222 899999999888887766443 5778999999987776655443
Q ss_pred CCeeEEEEecc----cccc-cccccccceeEEecCC--CCcchhhhhhHHHHHHh------------------------h
Q psy10684 125 SDIFIFMLSTR----AGGL-GINLATADVVVLYDSD--WNPQMDLQAMVREAKIL------------------------R 173 (288)
Q Consensus 125 ~~~~vll~s~~----~~~~-Glnl~~a~~vi~~d~~--wnp~~~~Qa~~R~~R~G------------------------q 173 (288)
++.+++.++. ...+ .+++....++|+=+-+ .+.+...+ +.++...- .
T Consensus 150 -~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~-i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l 227 (513)
T COG0513 150 -GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDD-IEKILKALPPDRQTLLFSATMPDDIRELARRYL 227 (513)
T ss_pred -CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHH-HHHHHHhCCcccEEEEEecCCCHHHHHHHHHHc
Confidence 2455444433 2222 4777777777765422 11111111 11111110 0
Q ss_pred hcchH------------HHH----------HHHhh---hhcc--ccchhhhhhccCCCccc-c--cccchhhhcccCCCc
Q psy10684 174 RGSIK------------KAL----------EAKMS---RYRA--PFHQLRIAYGANKGKNY-T--EEEDRYLYCRLDGQT 223 (288)
Q Consensus 174 ~~~v~------------~~i----------~~~~~---~~~~--~~~~~~~~~~~~~~~~~-~--e~~~gi~~~~l~G~~ 223 (288)
..++. ..| .+++. .+.. ...+++++.......+. . -...|+....|+|++
T Consensus 228 ~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l 307 (513)
T COG0513 228 NDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDL 307 (513)
T ss_pred cCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 01100 000 00100 0000 01113333222221111 1 124578899999999
Q ss_pred cccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 224 AHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 224 ~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++++|.+.++.|. +..+.|++.+ ..++-||+...-++||.||++.+|...-+.++|.
T Consensus 308 ~q~~R~~~l~~F~--~g~~~vLVaT-DvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRT 364 (513)
T COG0513 308 PQEERDRALEKFK--DGELRVLVAT-DVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRT 364 (513)
T ss_pred CHHHHHHHHHHHH--cCCCCEEEEe-chhhccCCccccceeEEccCCCCHHHheeccCcc
Confidence 9999999999998 6667776665 7789999999999999999999999999999986
No 181
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.80 E-value=0.062 Score=51.00 Aligned_cols=95 Identities=15% Similarity=0.223 Sum_probs=68.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc-CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR-GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~-~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
..|+|....+.++......+.++||-+........+.+.|+.. +.....+||.++..+|.+....-.. +...| ++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~--g~~~I-VVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN--GEILV-VIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc--CCCCE-EEC
Confidence 3689999998888887788889999999999888888888764 6788999999999998877766652 33344 444
Q ss_pred cccccccccccccceeEEec
Q psy10684 134 TRAGGLGINLATADVVVLYD 153 (288)
Q Consensus 134 ~~~~~~Glnl~~a~~vi~~d 153 (288)
|..+- =+.+.....||+-|
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 44322 13344555555444
No 182
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.76 E-value=0.0028 Score=50.96 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=54.3
Q ss_pred HhCCCeEEEEecchHHHHHHHHHHhhcC----cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc--ccccccccc
Q psy10684 71 KAQESRVLIFSQMTRMLDILEDYCYWRG----FKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR--AGGLGINLA 144 (288)
Q Consensus 71 ~~~~~kviIFs~~~~~~~~l~~~l~~~~----~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~--~~~~Glnl~ 144 (288)
...+.+++||.++-..++.+...+.... +. +... +...+.+.++.|+. ..+ .+|+++. .-++|+|+.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~-v~~q---~~~~~~~~l~~~~~-~~~--~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIP-VFVQ---GSKSRDELLEEFKR-GEG--AILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSC-EEES---TCCHHHHHHHHHCC-SSS--EEEEEETTSCCGSSS--E
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccce-eeec---CcchHHHHHHHHHh-ccC--eEEEEEecccEEEeecCC
Confidence 3456899999999999999999887664 32 2222 24678899999994 332 2466666 889999999
Q ss_pred --ccceeEEecCCCCcc
Q psy10684 145 --TADVVVLYDSDWNPQ 159 (288)
Q Consensus 145 --~a~~vi~~d~~wnp~ 159 (288)
.+..||+...|+-+.
T Consensus 79 ~~~~r~vii~glPfp~~ 95 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPP 95 (167)
T ss_dssp CESEEEEEEES-----T
T ss_pred CchhheeeecCCCCCCC
Confidence 488999999998543
No 183
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=96.74 E-value=0.016 Score=56.93 Aligned_cols=95 Identities=9% Similarity=0.029 Sum_probs=72.8
Q ss_pred CCeEEEEecchHHHHHHHHHHhhc-----CcEEEEeeCCCCHH---------------------HHHHHHHhhcCCCCCe
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWR-----GFKYCRLDGQTAHE---------------------DRQRQINDFNMEGSDI 127 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~-----~~~~~~~~G~~~~~---------------------~R~~~i~~F~~~~~~~ 127 (288)
+.|.+|||.+...+..+...|... +...+.++|+.+.+ ...+++++|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~-~~~~ 592 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKK-EENP 592 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcC-CCCc
Confidence 479999999999998888777553 34566777765433 12478999983 3556
Q ss_pred eEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 128 FIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 128 ~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
++ |+..+-...|.|.+..+++++..|--+. ...|+++|+-|+
T Consensus 593 ~i-lIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 593 KL-LIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred eE-EEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 66 5666999999999999999888776654 578999999995
No 184
>KOG0328|consensus
Probab=96.65 E-value=0.0023 Score=54.74 Aligned_cols=69 Identities=19% Similarity=0.410 Sum_probs=59.7
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
..+....++|++++++|++++.+|+ ...-+|+ +++..=+-|++.+.-|.||.||.|-|+...-+.|+|+
T Consensus 289 ~nftVssmHGDm~qkERd~im~dFR--sg~SrvL-itTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRS 357 (400)
T KOG0328|consen 289 ANFTVSSMHGDMEQKERDKIMNDFR--SGKSRVL-ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRS 357 (400)
T ss_pred hCceeeeccCCcchhHHHHHHHHhh--cCCceEE-EEechhhccCCcceeEEEEecCCCccHHHHhhhhccc
Confidence 3567788999999999999999999 4444554 4667777899999999999999999999999999997
No 185
>PRK02362 ski2-like helicase; Provisional
Probab=96.53 E-value=0.018 Score=57.27 Aligned_cols=66 Identities=21% Similarity=0.140 Sum_probs=51.6
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE----eC-----CCCChhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD-----SDWNPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~----~d-----~~wnp~~~~Qa~~Ra 283 (288)
.....+|+++.++|..+.+.|. +..++|+ +++.+.+.|+|+.+.+.||. || .+.++..-.|-++||
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr--~G~i~VL-vaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRA 379 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFR--DRLIKVI-SSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRA 379 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHH--cCCCeEE-EechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcC
Confidence 4567799999999999999998 5666655 46688889999987766664 55 345666777999999
No 186
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=96.43 E-value=0.14 Score=49.25 Aligned_cols=200 Identities=15% Similarity=0.212 Sum_probs=123.2
Q ss_pred cCchHHH-HHHHHHHHHhCCCeEEEEecchHH----HHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEE
Q psy10684 56 NSGKMVV-LDKLLPKLKAQESRVLIFSQMTRM----LDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIF 130 (288)
Q Consensus 56 ~s~K~~~-l~~ll~~~~~~~~kviIFs~~~~~----~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vl 130 (288)
.|+|.-. ++.++. ..+.|.++.+-....-. .+.+...|...|+....++|++..++|.+++++-. ++.+.++
T Consensus 293 GSGKTvVA~laml~-ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~--~G~~~iv 369 (677)
T COG1200 293 GSGKTVVALLAMLA-AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLA--SGEIDIV 369 (677)
T ss_pred CCCHHHHHHHHHHH-HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHh--CCCCCEE
Confidence 5888764 444443 46677888887765332 34566777777999999999999999999999997 3445554
Q ss_pred EEeccc-ccccccccccceeEEecCCCCcchhhhhhHHHHHH-----hhhcc----------------------------
Q psy10684 131 MLSTRA-GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI-----LRRGS---------------------------- 176 (288)
Q Consensus 131 l~s~~~-~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~-----Gq~~~---------------------------- 176 (288)
+-|.| --..+++.+.-.||. +++||.|=.-|. |.+.+
T Consensus 370 -VGTHALiQd~V~F~~LgLVIi--------DEQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~Id 440 (677)
T COG1200 370 -VGTHALIQDKVEFHNLGLVII--------DEQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIID 440 (677)
T ss_pred -EEcchhhhcceeecceeEEEE--------eccccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhc
Confidence 44433 333444444444443 345555433332 22100
Q ss_pred --------h---------HHHHHHHhhhhccccchhhhhhccCCCcc------ccc---c----cchhhhcccCCCcccc
Q psy10684 177 --------I---------KKALEAKMSRYRAPFHQLRIAYGANKGKN------YTE---E----EDRYLYCRLDGQTAHE 226 (288)
Q Consensus 177 --------v---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~e---~----~~gi~~~~l~G~~~~~ 226 (288)
+ ...+.+.+.+.....+++..-..--..++ ..+ + ..++....++|.|+.+
T Consensus 441 ElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~ 520 (677)
T COG1200 441 ELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPA 520 (677)
T ss_pred cCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChH
Confidence 0 12233333333334444432221111111 000 0 1145577889999999
Q ss_pred chhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC
Q psy10684 227 DRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD 270 (288)
Q Consensus 227 ~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~ 270 (288)
++++++.+|. +.++. +|+|++.=-+|.|..-|+-.++.++.
T Consensus 521 eKd~vM~~Fk--~~e~~-ILVaTTVIEVGVdVPnATvMVIe~AE 561 (677)
T COG1200 521 EKDAVMEAFK--EGEID-ILVATTVIEVGVDVPNATVMVIENAE 561 (677)
T ss_pred HHHHHHHHHH--cCCCc-EEEEeeEEEecccCCCCeEEEEechh
Confidence 9999999998 44444 56688999999999999999999875
No 187
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.37 E-value=0.034 Score=55.27 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=79.1
Q ss_pred HHHhhcCCCCCCCCCCCC-CCCCCCcccc-ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 27 QLRKCSNHPYLFDGAEPG-PPYTTDEHLV-FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 27 ~Lrq~~~hP~l~~~~~~~-~~~~~~~~~~-~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
.|+++.+-+.+.-+.... ...+.....+ ....|+.++.+-+.+..+.|..|||-+.+.+.-+.|...|...|+++-.+
T Consensus 390 Ef~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 390 EFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 466666666554432221 1111222222 23579999999999888999999999999999999999999999999999
Q ss_pred eCCC-CHHHHHHHHHhhcCCCCCeeEEEEeccccccccccc
Q psy10684 105 DGQT-AHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA 144 (288)
Q Consensus 105 ~G~~-~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~ 144 (288)
+... ..++-.+++.+=. .++ -+-++|.-+|||-|+.
T Consensus 470 NAk~~~~~~EA~IIa~AG--~~G--aVTIATNMAGRGTDIk 506 (939)
T PRK12902 470 NAKPENVEREAEIVAQAG--RKG--AVTIATNMAGRGTDII 506 (939)
T ss_pred eCCCcchHhHHHHHHhcC--CCC--cEEEeccCCCCCcCEe
Confidence 9973 3333444555432 222 2477999999997766
No 188
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.22 E-value=0.048 Score=55.16 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=64.9
Q ss_pred HHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 62 VLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 62 ~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
.+.+.|.++. ..+.+++||+.+..+++.+...|.. .+++. +..+.. ..|.+++++|+.. +..| |+.+++
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~--~~~i-Llgt~s 734 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNG--EKAI-LLGTSS 734 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhC--CCeE-EEEcce
Confidence 3444454433 3456899999999999999998875 24442 333332 5789999999842 2233 678899
Q ss_pred ccccccccc--cceeEEecCCCCcch
Q psy10684 137 GGLGINLAT--ADVVVLYDSDWNPQM 160 (288)
Q Consensus 137 ~~~Glnl~~--a~~vi~~d~~wnp~~ 160 (288)
.++|+|+.+ ...||+...|+-+..
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf~~p~ 760 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPFANPK 760 (850)
T ss_pred eecccccCCCceEEEEEeCCCCCCCC
Confidence 999999995 457788888875433
No 189
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.02 E-value=0.027 Score=55.12 Aligned_cols=94 Identities=11% Similarity=0.122 Sum_probs=78.4
Q ss_pred CeEEEEecchHHHHHHHHHHhhc-----CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccccccee
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWR-----GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV 149 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~-----~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~v 149 (288)
.|.||||.....++.+...|... |--+..++|+.. +-+..|+.|.. ......+.++.+....|+|.+.+..+
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeee
Confidence 59999999999999999998765 334677888874 45567899984 33334458899999999999999999
Q ss_pred EEecCCCCcchhhhhhHHHHHH
Q psy10684 150 VLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 150 i~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
+++..-.+-..+.|.+||.-|+
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999887
No 190
>KOG0952|consensus
Probab=95.96 E-value=0.026 Score=56.44 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=75.9
Q ss_pred HHhCCCeEEEEecchHHHHHHHHHHhhc----C-------------------cEEEEeeCCCCHHHHHHHHHhhcCCCCC
Q psy10684 70 LKAQESRVLIFSQMTRMLDILEDYCYWR----G-------------------FKYCRLDGQTAHEDRQRQINDFNMEGSD 126 (288)
Q Consensus 70 ~~~~~~kviIFs~~~~~~~~l~~~l~~~----~-------------------~~~~~~~G~~~~~~R~~~i~~F~~~~~~ 126 (288)
...+|+.|+||+..+...-..++.|... | .....-|.++..++|+-.=+.|. .+.
T Consensus 345 ~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~--~G~ 422 (1230)
T KOG0952|consen 345 FLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK--EGH 422 (1230)
T ss_pred HHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh--cCC
Confidence 4567899999999988766666665443 1 12344577788889998889997 456
Q ss_pred eeEEEEecccccccccccccceeEEecCCCCcch----------hhhhhHHHHHHh
Q psy10684 127 IFIFMLSTRAGGLGINLATADVVVLYDSDWNPQM----------DLQAMVREAKIL 172 (288)
Q Consensus 127 ~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~----------~~Qa~~R~~R~G 172 (288)
++| |++|...+-|.||++-..+|---.-|+++. -.|-.||+||..
T Consensus 423 i~v-L~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 423 IKV-LCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred ceE-EEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCC
Confidence 666 899999999999997766666666677654 469999999974
No 191
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.95 E-value=0.053 Score=53.23 Aligned_cols=91 Identities=15% Similarity=0.215 Sum_probs=66.3
Q ss_pred HHHHHHHHH-HhCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc
Q psy10684 62 VLDKLLPKL-KAQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL 139 (288)
Q Consensus 62 ~l~~ll~~~-~~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~ 139 (288)
.+...+..+ ...+.+++||..+-.++..+...+...... .+...|..+ +...+++|.....+ .+++.+..-++
T Consensus 466 ~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~E 540 (654)
T COG1199 466 KLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWE 540 (654)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccC
Confidence 344444433 334558999999999999999998876652 445555553 44889999844332 56899999999
Q ss_pred ccccc--ccceeEEecCCCC
Q psy10684 140 GINLA--TADVVVLYDSDWN 157 (288)
Q Consensus 140 Glnl~--~a~~vi~~d~~wn 157 (288)
|+|+. ....||+...|+-
T Consensus 541 GVD~~g~~l~~vvI~~lPfp 560 (654)
T COG1199 541 GVDFPGDALRLVVIVGLPFP 560 (654)
T ss_pred cccCCCCCeeEEEEEecCCC
Confidence 99999 4588999998885
No 192
>KOG0338|consensus
Probab=95.90 E-value=0.36 Score=45.03 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=57.4
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|+...-++|+.++.+|-+.+..|. +..+.+ |+++..++-||++.+-..||.|+-|-.--...+.++|.
T Consensus 449 lgl~agElHGsLtQ~QRlesL~kFk--~~eidv-LiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRT 517 (691)
T KOG0338|consen 449 LGLKAGELHGSLTQEQRLESLEKFK--KEEIDV-LIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRT 517 (691)
T ss_pred hhchhhhhcccccHHHHHHHHHHHH--hccCCE-EEEechhhccCCccceeEEEeccCchhHHHHHHHhhhh
Confidence 3677788999999999999999998 555555 45668888999999999999999987777777777764
No 193
>PRK13767 ATP-dependent helicase; Provisional
Probab=95.84 E-value=0.0097 Score=60.24 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=58.7
Q ss_pred hhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 214 i~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
......+|+++.++|..+.+.|. +..+++ |+++.+.+.|+|+...+.||.++++.++..-.|.++||
T Consensus 315 ~~i~~hHg~ls~~~R~~ve~~fk--~G~i~v-LVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRa 381 (876)
T PRK13767 315 DNIGAHHSSLSREVRLEVEEKLK--RGELKV-VVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRA 381 (876)
T ss_pred cceeeeeCCCCHHHHHHHHHHHH--cCCCeE-EEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccC
Confidence 35667899999999999999998 555554 55668889999999999999999999999999999998
No 194
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=95.82 E-value=0.12 Score=51.02 Aligned_cols=108 Identities=18% Similarity=0.313 Sum_probs=76.6
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.+...+-.++.. ...|+++.|||+...+.+.+++.+...+..+..++|..+..+ ++.+. +.+| ++-|.+-
T Consensus 267 ~~~tF~~~L~~~-L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W~----~~~V-viYT~~i 336 (824)
T PF02399_consen 267 DETTFFSELLAR-LNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESWK----KYDV-VIYTPVI 336 (824)
T ss_pred chhhHHHHHHHH-HhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccccc----ceeE-EEEeceE
Confidence 334444445544 567899999999999999999999999999999998877663 24443 4455 6777777
Q ss_pred ccccccc--ccceeEEecCC--CCcch--hhhhhHHHHHHhhhc
Q psy10684 138 GLGINLA--TADVVVLYDSD--WNPQM--DLQAMVREAKILRRG 175 (288)
Q Consensus 138 ~~Glnl~--~a~~vi~~d~~--wnp~~--~~Qa~~R~~R~Gq~~ 175 (288)
..|+++. ..+.++.|=.+ .-|.. ..|.+||+..+...+
T Consensus 337 tvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~e 380 (824)
T PF02399_consen 337 TVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDNE 380 (824)
T ss_pred EEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccCe
Confidence 8888887 34556656222 23443 579999998887553
No 195
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=95.68 E-value=0.045 Score=54.01 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=93.2
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++++-+......|..|||-+.+.+.-+.+.+.|.+.|++...+...-. .|+.-+-.+....+. .-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~ga---VTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPGA---VTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCCc---cccccc
Confidence 457899999999999999999999999999999999999999999988988775 455555555412222 367999
Q ss_pred cccccccccccc-----------eeEEecCCCCcchhhhhhHHHHHHhhhcchH
Q psy10684 136 AGGLGINLATAD-----------VVVLYDSDWNPQMDLQAMVREAKILRRGSIK 178 (288)
Q Consensus 136 ~~~~Glnl~~a~-----------~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~ 178 (288)
-+|+|-++.-.. +||=-+..-+.....|--||+||.|-.+..+
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~ 539 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSR 539 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhh
Confidence 999999998444 4666666666677778889999999777653
No 196
>KOG0348|consensus
Probab=95.65 E-value=0.018 Score=53.56 Aligned_cols=69 Identities=25% Similarity=0.444 Sum_probs=59.5
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.+.++.+++|+|++++|..+...|. .+.+. | |+.+..++-||+|..-.-||=|||+..|+.....|+|.
T Consensus 470 ~~~k~~rLHGsm~QeeRts~f~~Fs-~~~~~-V-LLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 470 MDLKFYRLHGSMEQEERTSVFQEFS-HSRRA-V-LLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred hcceEEEecCchhHHHHHHHHHhhc-cccce-E-EEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhh
Confidence 3567899999999999999999998 33332 4 55568888999999999999999999999999999985
No 197
>KOG0951|consensus
Probab=95.62 E-value=0.073 Score=54.39 Aligned_cols=70 Identities=23% Similarity=0.439 Sum_probs=54.9
Q ss_pred cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE-----ecCC---C---CcchhhhhhHH
Q psy10684 99 FKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL-----YDSD---W---NPQMDLQAMVR 167 (288)
Q Consensus 99 ~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~-----~d~~---w---np~~~~Qa~~R 167 (288)
..+..-|.+++..+|...=+.|. ++.+.| +++|...+.|+||+. ++||. |||. | .|-...|+.||
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~--~g~iqv-lvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFA--DGHIQV-LVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLGR 683 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHh--cCceeE-EEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHhh
Confidence 35778899999999999999997 566677 899999999999984 55554 3332 3 35666799999
Q ss_pred HHHHh
Q psy10684 168 EAKIL 172 (288)
Q Consensus 168 ~~R~G 172 (288)
++|.+
T Consensus 684 agrp~ 688 (1674)
T KOG0951|consen 684 AGRPQ 688 (1674)
T ss_pred cCCCc
Confidence 98875
No 198
>KOG0950|consensus
Probab=95.61 E-value=0.023 Score=56.22 Aligned_cols=101 Identities=16% Similarity=0.190 Sum_probs=68.6
Q ss_pred HHHhCCCeEEEEecchHHHHHHHHHHhhc--------------------------------------CcEEEEeeCCCCH
Q psy10684 69 KLKAQESRVLIFSQMTRMLDILEDYCYWR--------------------------------------GFKYCRLDGQTAH 110 (288)
Q Consensus 69 ~~~~~~~kviIFs~~~~~~~~l~~~l~~~--------------------------------------~~~~~~~~G~~~~ 110 (288)
+...++.++||||..+.-++.++..+.+. ...+...|.+.+.
T Consensus 455 et~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~ 534 (1008)
T KOG0950|consen 455 ETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTS 534 (1008)
T ss_pred hhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceeccccccc
Confidence 33445667999999988777665332111 1234556777888
Q ss_pred HHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCC-----CCcchhhhhhHHHHHHhh
Q psy10684 111 EDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD-----WNPQMDLQAMVREAKILR 173 (288)
Q Consensus 111 ~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~-----wnp~~~~Qa~~R~~R~Gq 173 (288)
++|..+=..|+ .+.+.| +++|...+-|.||+. .+||.=-|. -....|.|.+||++|+|-
T Consensus 535 eER~~iE~afr--~g~i~v-l~aTSTlaaGVNLPA-rRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 535 EEREIIEAAFR--EGNIFV-LVATSTLAAGVNLPA-RRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred chHHHHHHHHH--hcCeEE-EEecchhhccCcCCc-ceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 89987777887 445555 677777999999985 455544332 344678999999999973
No 199
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=95.54 E-value=0.016 Score=54.13 Aligned_cols=66 Identities=18% Similarity=0.392 Sum_probs=58.7
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
...++|+++..+|.+.++.|. ... ...|++.+.++.|.++..|+.+|++.|.=+|....|.++|..
T Consensus 309 ~~~it~~t~~~eR~~il~~fr-~g~--~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~L 374 (442)
T COG1061 309 VEAITGETPKEEREAILERFR-TGG--IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGL 374 (442)
T ss_pred eEEEECCCCHHHHHHHHHHHH-cCC--CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhc
Confidence 348999999999999999998 433 456677799999999999999999999999999999999974
No 200
>COG4889 Predicted helicase [General function prediction only]
Probab=95.50 E-value=0.039 Score=54.43 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=59.2
Q ss_pred CcEEEEeeCCCCHHHHHHHHHhhcC-CCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 98 GFKYCRLDGQTAHEDRQRQINDFNM-EGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 98 ~~~~~~~~G~~~~~~R~~~i~~F~~-~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
.+.+-.++|.|+..+|.+.+..-+. +...|+| |-+.++.++|++.+.-+-||+|+|--.--.-.|++||+-|-.
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI-lSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKI-LSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchhee-eccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 4566778999999999776654432 2334555 889999999999999999999999776677789999998864
No 201
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.43 E-value=0.015 Score=50.33 Aligned_cols=51 Identities=24% Similarity=0.394 Sum_probs=42.6
Q ss_pred HHHhhcccCCCCeeEEEEeecccccCCCccccc--------eEEEeCCCCChhhhhhhhhhh
Q psy10684 230 RQINDFNMEGSDIFIFMLSTRAGGLGINLATAD--------VVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 230 ~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~--------~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
...+.|+ +.+..|+++| .||++|+.|.+-. .-|+++++|+....-|-++|.
T Consensus 52 ~e~~~F~--~g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~ 110 (278)
T PF13871_consen 52 AEKQAFM--DGEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRT 110 (278)
T ss_pred HHHHHHh--CCCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccc
Confidence 4667888 6677889998 9999999999742 246889999999999999997
No 202
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=95.43 E-value=0.25 Score=45.81 Aligned_cols=110 Identities=20% Similarity=0.235 Sum_probs=83.7
Q ss_pred CchHHHHHH-HHHHHH--hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 57 SGKMVVLDK-LLPKLK--AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 57 s~K~~~l~~-ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
..+++++.+ ++..+. ....++|||..+--..-.|...|+..++.++.++--++..+-.++-..|. .+..++||.+
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~--~G~~~iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFF--HGRKPILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHH--cCCceEEEEE
Confidence 456666655 555554 23478999988777777888999999999999999999999999999998 4566777776
Q ss_pred cccc-cccccccccceeEEecCCCCcchhhhhhHHH
Q psy10684 134 TRAG-GLGINLATADVVVLYDSDWNPQMDLQAMVRE 168 (288)
Q Consensus 134 ~~~~-~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~ 168 (288)
=..- =+=..+.++.+||+|.+|-+|.-|...+.-.
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~ 393 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNML 393 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhh
Confidence 4431 1234466789999999999999998766444
No 203
>KOG1123|consensus
Probab=95.39 E-value=0.025 Score=52.31 Aligned_cols=69 Identities=20% Similarity=0.332 Sum_probs=59.5
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC-Chhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w-np~~~~Qa~~Ra 283 (288)
...--.|.|.+++.+|-+++..|+ .++.+..+.+| +.|.+.++|.-||.+|-...+. .---|.|..+|.
T Consensus 562 kl~KpfIYG~Tsq~ERm~ILqnFq-~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRI 631 (776)
T KOG1123|consen 562 KLGKPFIYGPTSQNERMKILQNFQ-TNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRI 631 (776)
T ss_pred HcCCceEECCCchhHHHHHHHhcc-cCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHH
Confidence 344457899999999999999999 89999888889 9999999999999999998884 344567988887
No 204
>KOG0920|consensus
Probab=95.34 E-value=0.044 Score=54.81 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=83.3
Q ss_pred CchHHHHHHHHHHHHhC--CCeEEEEecchHHHHHHHHHHhhc-------CcEEEEeeCCCCHHHHHHHHHhhcCCCCCe
Q psy10684 57 SGKMVVLDKLLPKLKAQ--ESRVLIFSQMTRMLDILEDYCYWR-------GFKYCRLDGQTAHEDRQRQINDFNMEGSDI 127 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~--~~kviIFs~~~~~~~~l~~~l~~~-------~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~ 127 (288)
.-+...+..++..+.+. ...+|||-.-...+..+...|..+ .+-...+|+.++..+.+.+ |+...+++
T Consensus 394 ~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~ 470 (924)
T KOG0920|consen 394 EIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGT 470 (924)
T ss_pred cccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCc
Confidence 35667777777776554 357999999999999888888643 3667889999998777665 55455666
Q ss_pred eEEEEecccccccccccccceeEEe--------cCC---------C-CcchhhhhhHHHHHH
Q psy10684 128 FIFMLSTRAGGLGINLATADVVVLY--------DSD---------W-NPQMDLQAMVREAKI 171 (288)
Q Consensus 128 ~vll~s~~~~~~Glnl~~a~~vi~~--------d~~---------w-np~~~~Qa~~R~~R~ 171 (288)
+-++++|..+..++++.++-+||-. |+. | .-+.-.||.||+||.
T Consensus 471 RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv 532 (924)
T KOG0920|consen 471 RKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV 532 (924)
T ss_pred chhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc
Confidence 6669999999999999999888754 322 2 234456888888776
No 205
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=95.27 E-value=0.02 Score=56.99 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=36.6
Q ss_pred cccCchHHHHHHHHHHHHhC---------CCeEEEEecchHHHHHHHHHHhh
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQ---------ESRVLIFSQMTRMLDILEDYCYW 96 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~---------~~kviIFs~~~~~~~~l~~~l~~ 96 (288)
....||+..|.++|+++..+ +.++||||++..++..|.++|..
T Consensus 266 lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 266 LEENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 45799999999999886543 36799999999999999998865
No 206
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.27 E-value=0.11 Score=51.97 Aligned_cols=88 Identities=13% Similarity=0.124 Sum_probs=67.4
Q ss_pred HHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 62 VLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 62 ~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
++...+.... +....++||-.-...++...+.|.+ ..+..+.++|.++.++..++ |+....+.+-++++|++
T Consensus 246 ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNI 322 (845)
T COG1643 246 AIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNI 322 (845)
T ss_pred HHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccc
Confidence 4444444433 3346899999999999999998887 45889999999999988774 55333443434899999
Q ss_pred ccccccccccceeEEe
Q psy10684 137 GGLGINLATADVVVLY 152 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~ 152 (288)
+-.+|++.+..+||--
T Consensus 323 AETSLTI~gIr~VIDs 338 (845)
T COG1643 323 AETSLTIPGIRYVIDS 338 (845)
T ss_pred cccceeeCCeEEEecC
Confidence 9999999999999854
No 207
>KOG0339|consensus
Probab=95.21 E-value=0.51 Score=44.07 Aligned_cols=220 Identities=13% Similarity=0.212 Sum_probs=124.9
Q ss_pred ccCchHHHHHH-HHHHHH-------hCCCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHHHHHhhcC
Q psy10684 55 FNSGKMVVLDK-LLPKLK-------AQESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQRQINDFNM 122 (288)
Q Consensus 55 ~~s~K~~~l~~-ll~~~~-------~~~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~~i~~F~~ 122 (288)
..|+|..+++. ++.++. .++.=.||.+...+.+..+...+++ .|+..+.++|+.+.-+..+.++
T Consensus 269 tgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---- 344 (731)
T KOG0339|consen 269 TGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---- 344 (731)
T ss_pred ccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----
Confidence 37888887553 332322 1233456777777776666655544 4899999999999877766654
Q ss_pred CCCCeeEEEEecc-----cccccccccccceeEEecCC--CCcchh-----------------------hhhhHHHHHHh
Q psy10684 123 EGSDIFIFMLSTR-----AGGLGINLATADVVVLYDSD--WNPQMD-----------------------LQAMVREAKIL 172 (288)
Q Consensus 123 ~~~~~~vll~s~~-----~~~~Glnl~~a~~vi~~d~~--wnp~~~-----------------------~Qa~~R~~R~G 172 (288)
...+ ++++++. +--.+.|+..++.+++=+.. ++-.-+ .+.|-|..|--
T Consensus 345 ~g~E--ivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~ 422 (731)
T KOG0339|consen 345 EGAE--IVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDI 422 (731)
T ss_pred cCCe--EEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHH
Confidence 1233 3333332 33457888888888875432 121212 23344444432
Q ss_pred hhcchH----------HHHHHHh-------hhhccccchhhhhhccCCCccccc------------ccchhhhcccCCCc
Q psy10684 173 RRGSIK----------KALEAKM-------SRYRAPFHQLRIAYGANKGKNYTE------------EEDRYLYCRLDGQT 223 (288)
Q Consensus 173 q~~~v~----------~~i~~~~-------~~~~~~~~~~~~~~~~~~~~~~~e------------~~~gi~~~~l~G~~ 223 (288)
-.++|. +-|+..+ .++.-..+.++.+....+..-+.. ...++....++|++
T Consensus 423 L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdk 502 (731)
T KOG0339|consen 423 LSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDK 502 (731)
T ss_pred hcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCch
Confidence 111110 1111110 011111111222211111111111 23588999999999
Q ss_pred cccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 224 AHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 224 ~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.+.+|.+.+.+|. .....|++. +.....||+...-..|++||-.-.-..-.|.|+|-
T Consensus 503 dqa~rn~~ls~fK--kk~~~Vlva-tDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 503 DQAERNEVLSKFK--KKRKPVLVA-TDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred hhHHHHHHHHHHh--hcCCceEEE-eeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 9999999999998 344455554 46777899999999999998876666666877764
No 208
>KOG4284|consensus
Probab=95.15 E-value=0.046 Score=52.18 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=63.1
Q ss_pred ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 210 EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 210 ~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
...|+....++|-|++.+|.-+++.+. +..++| |+|+.-.+-|++-..+|.||.+|++-|-....+.|+||
T Consensus 293 ~ssG~d~~~ISgaM~Q~~Rl~a~~~lr--~f~~rI-LVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRA 363 (980)
T KOG4284|consen 293 KSSGLDVTFISGAMSQKDRLLAVDQLR--AFRVRI-LVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRA 363 (980)
T ss_pred hccCCCeEEeccccchhHHHHHHHHhh--hceEEE-EEecchhhccCCccccceEEecCCCcchHHHHHHhhhc
Confidence 356899999999999999999999987 666665 55778888999999999999999999999999999999
No 209
>KOG0949|consensus
Probab=94.81 E-value=0.032 Score=55.52 Aligned_cols=68 Identities=21% Similarity=0.138 Sum_probs=57.4
Q ss_pred EeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecC-CCCcchhhhhhHHHHHHhh
Q psy10684 103 RLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS-DWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 103 ~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~-~wnp~~~~Qa~~R~~R~Gq 173 (288)
.-|.+++...|+.+---|+ .+...| |++|.+.+.|+|+++-+.|+..|. ..||-.|.|+.||+||-|=
T Consensus 967 ~HHaglNr~yR~~VEvLFR--~g~L~V-lfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGF 1035 (1330)
T KOG0949|consen 967 VHHAGLNRKYRSLVEVLFR--QGHLQV-LFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGF 1035 (1330)
T ss_pred ccccccchHHHHHHHHHhh--cCceEE-EEEeeehhcccCCCceeEEEeccccccCchhHHhhhcccccccc
Confidence 4688899899998888897 455556 899999999999998877777774 5799999999999999983
No 210
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.81 E-value=0.43 Score=48.14 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccc
Q psy10684 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGI 141 (288)
Q Consensus 62 ~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Gl 141 (288)
.+.+.|..+...+.+++|+..+.++++.+...|....++. ...|... .|.+++++|+..++ .| |+.+.+-.+|+
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~--~v-LlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQ--QI-LLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCC--eE-EEecchhhCCC
Confidence 4555555555556788888888888898888887654443 5555432 35678999984322 33 77779999999
Q ss_pred ccc--ccceeEEecCCCCcc
Q psy10684 142 NLA--TADVVVLYDSDWNPQ 159 (288)
Q Consensus 142 nl~--~a~~vi~~d~~wnp~ 159 (288)
|++ .+..||+.-.|+-+.
T Consensus 709 D~p~~~~~~viI~kLPF~~P 728 (820)
T PRK07246 709 DFVQADRMIEVITRLPFDNP 728 (820)
T ss_pred CCCCCCeEEEEEecCCCCCC
Confidence 996 456678888776533
No 211
>KOG0336|consensus
Probab=94.75 E-value=1.1 Score=40.90 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=68.7
Q ss_pred cchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeC
Q psy10684 192 FHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD 268 (288)
Q Consensus 192 ~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d 268 (288)
-.+++++.......+.... -.|+....++|...+.+|..+++.|. ...++|++ .+..++-||++..-.||+.||
T Consensus 465 ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~k--sG~vrILv-aTDlaSRGlDv~DiTHV~NyD 541 (629)
T KOG0336|consen 465 NDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFK--SGEVRILV-ATDLASRGLDVPDITHVYNYD 541 (629)
T ss_pred CceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhh--cCceEEEE-EechhhcCCCchhcceeeccC
Confidence 3445555555544443332 24888899999999999999999998 66777655 557788999999999999999
Q ss_pred CCCChhhhhhhhhhh
Q psy10684 269 SDWNPQMDLQAMVRT 283 (288)
Q Consensus 269 ~~wnp~~~~Qa~~Ra 283 (288)
-+-|-...-+.++|.
T Consensus 542 FP~nIeeYVHRvGrt 556 (629)
T KOG0336|consen 542 FPRNIEEYVHRVGRT 556 (629)
T ss_pred CCccHHHHHHHhccc
Confidence 999988877777764
No 212
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.55 E-value=0.45 Score=48.73 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=64.1
Q ss_pred HHHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhhcCc--EEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 61 VVLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYWRGF--KYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 61 ~~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~~~~--~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
..+.+.|..+. ..+.+++|+..+..++..+...|..... .+..+.-+++...|.+++++|+.... .| |+.+.+-
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~--~i-LlG~~sF 814 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK--AI-LLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC--eE-EEecCcc
Confidence 34455554443 3455788887788888888888865422 12223323333568899999984322 33 6678999
Q ss_pred cccccccc--cceeEEecCCCC-cc
Q psy10684 138 GLGINLAT--ADVVVLYDSDWN-PQ 159 (288)
Q Consensus 138 ~~Glnl~~--a~~vi~~d~~wn-p~ 159 (288)
.+|+|+++ ...||+.-.|+. |.
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCC
Confidence 99999995 589999998984 44
No 213
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=94.41 E-value=0.062 Score=49.81 Aligned_cols=61 Identities=20% Similarity=0.405 Sum_probs=52.8
Q ss_pred CCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 220 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 220 ~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+-+|++.+-.+.|+.|+ .+++.| |+++..|-.||++...|.||+|||-=.|----|.++|.
T Consensus 406 ~~GMsQkeQ~eiI~~Fr--~Ge~nV-LVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRT 466 (542)
T COG1111 406 DKGMSQKEQKEIIDQFR--KGEYNV-LVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRT 466 (542)
T ss_pred ccccCHHHHHHHHHHHh--cCCceE-EEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCcc
Confidence 45688889999999998 566555 55779999999999999999999998888888999986
No 214
>KOG0354|consensus
Probab=94.28 E-value=0.06 Score=52.44 Aligned_cols=60 Identities=18% Similarity=0.386 Sum_probs=52.9
Q ss_pred CCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 221 GQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 221 G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
-+|+..+-++.++.|+ +++..| |+++..|-.||+...+|.||.||-.=||.---|+++||
T Consensus 456 ~gmtqk~Q~evl~~Fr--~G~~Nv-LVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGRg 515 (746)
T KOG0354|consen 456 TGMTQKEQKEVLDKFR--DGEINV-LVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGRG 515 (746)
T ss_pred cccCHHHHHHHHHHHh--CCCccE-EEEecchhccCCcccccEEEEecCCccHHHHHHHhccc
Confidence 4677788889999999 566554 55779999999999999999999999999999999997
No 215
>KOG0345|consensus
Probab=94.27 E-value=0.055 Score=49.69 Aligned_cols=223 Identities=17% Similarity=0.245 Sum_probs=128.3
Q ss_pred ccccCchHHH-HHHHHHHHHhCC-------CeEEEEecchHHHHHHHHH----Hhh-cCcEEEEeeCCCCHHHHHHHHHh
Q psy10684 53 LVFNSGKMVV-LDKLLPKLKAQE-------SRVLIFSQMTRMLDILEDY----CYW-RGFKYCRLDGQTAHEDRQRQIND 119 (288)
Q Consensus 53 ~~~~s~K~~~-l~~ll~~~~~~~-------~kviIFs~~~~~~~~l~~~----l~~-~~~~~~~~~G~~~~~~R~~~i~~ 119 (288)
....|+|.-+ ++-+++.+..+. --.||.+..++....|... +.+ .++++..+-|+.+.++ -+..
T Consensus 50 avTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~ 126 (567)
T KOG0345|consen 50 AVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKT 126 (567)
T ss_pred cCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHH
Confidence 3446888765 555665552221 1479999999886666543 333 4788899999976654 4677
Q ss_pred hcCCCCCeeEEEEeccc-------ccccccccccceeEEecCCC-------------------C------cchhhhhhHH
Q psy10684 120 FNMEGSDIFIFMLSTRA-------GGLGINLATADVVVLYDSDW-------------------N------PQMDLQAMVR 167 (288)
Q Consensus 120 F~~~~~~~~vll~s~~~-------~~~Glnl~~a~~vi~~d~~w-------------------n------p~~~~Qa~~R 167 (288)
|..+ ++.|++.++.- -+.+++......+|+=+.+- + .++-.|...-
T Consensus 127 fkee--~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~d 204 (567)
T KOG0345|consen 127 FKEE--GPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVED 204 (567)
T ss_pred HHHh--CCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHH
Confidence 8733 33444444331 23455544555555433211 0 1122233344
Q ss_pred HHHHhhhcchHHHH---------------------HHHhhhhc-----cccchhhhhhccCCCccc----ccc-cchhhh
Q psy10684 168 EAKILRRGSIKKAL---------------------EAKMSRYR-----APFHQLRIAYGANKGKNY----TEE-EDRYLY 216 (288)
Q Consensus 168 ~~R~Gq~~~v~~~i---------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~e~-~~gi~~ 216 (288)
..|.|-.++|...+ +++...+. ...++++++...-...++ .+. ......
T Consensus 205 L~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i 284 (567)
T KOG0345|consen 205 LARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREI 284 (567)
T ss_pred HHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcE
Confidence 44455444332111 11111110 111222222221111111 111 134667
Q ss_pred cccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 217 CRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 217 ~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.++|++....|.+.+.+|. ..+. .+ |+++..++=||+...-+.|+-+||+-+|..--+..+|+
T Consensus 285 ~~iHGK~~q~~R~k~~~~F~-~~~~-~v-l~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRT 348 (567)
T KOG0345|consen 285 FSIHGKMSQKARAKVLEAFR-KLSN-GV-LFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRT 348 (567)
T ss_pred EEecchhcchhHHHHHHHHH-hccC-ce-EEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchh
Confidence 88999999999999999999 4332 34 45668888999999999999999999999998888876
No 216
>KOG0953|consensus
Probab=94.15 E-value=0.053 Score=50.81 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=47.9
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD 270 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~ 270 (288)
..+.|.|+.|++-|.+....||.++.++.|++.| .|=|.||||. -.+||+++.-
T Consensus 383 k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~-IrRiiF~sl~ 436 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN-IRRIIFYSLI 436 (700)
T ss_pred ceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccccccc-eeEEEEeecc
Confidence 4789999999999999999999767888988888 8999999996 5789999876
No 217
>KOG0333|consensus
Probab=93.90 E-value=0.052 Score=50.53 Aligned_cols=86 Identities=26% Similarity=0.376 Sum_probs=66.1
Q ss_pred hhhhhccCCCccccc---ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC
Q psy10684 195 LRIAYGANKGKNYTE---EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW 271 (288)
Q Consensus 195 ~~~~~~~~~~~~~~e---~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w 271 (288)
++++.......+... ++.||..+.|+|+-++++|..++..|. + ....||+ -+.++|=|++..--|+||.||-.-
T Consensus 520 iIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr-~-~t~dIlV-aTDvAgRGIDIpnVSlVinydmak 596 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR-E-GTGDILV-ATDVAGRGIDIPNVSLVINYDMAK 596 (673)
T ss_pred EEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHH-h-cCCCEEE-EecccccCCCCCccceeeecchhh
Confidence 344444444444333 356899999999999999999999999 3 2223444 458889999999999999999988
Q ss_pred Chhhhhhhhhhh
Q psy10684 272 NPQMDLQAMVRT 283 (288)
Q Consensus 272 np~~~~Qa~~Ra 283 (288)
+-....+.|+|.
T Consensus 597 sieDYtHRIGRT 608 (673)
T KOG0333|consen 597 SIEDYTHRIGRT 608 (673)
T ss_pred hHHHHHHHhccc
Confidence 888888888875
No 218
>KOG0947|consensus
Probab=93.69 E-value=0.23 Score=49.61 Aligned_cols=108 Identities=16% Similarity=0.136 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhCC-CeEEEEecchHHHHHHHHHHhhcCcE---------------------------------------E
Q psy10684 62 VLDKLLPKLKAQE-SRVLIFSQMTRMLDILEDYCYWRGFK---------------------------------------Y 101 (288)
Q Consensus 62 ~l~~ll~~~~~~~-~kviIFs~~~~~~~~l~~~l~~~~~~---------------------------------------~ 101 (288)
....++..+...+ -.+|||+-++.-||.-+++|...++. .
T Consensus 554 ~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGi 633 (1248)
T KOG0947|consen 554 TWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGI 633 (1248)
T ss_pred hHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcc
Confidence 3555665555443 47999999999888888887655432 1
Q ss_pred EEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEec---------CCCCcchhhhhhHHHHHHh
Q psy10684 102 CRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD---------SDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 102 ~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d---------~~wnp~~~~Qa~~R~~R~G 172 (288)
...||+.=+--++-+=--|+ .+=++| |++|..-+.|+|++.-+ |++-. ...+|..|.|..||+||-|
T Consensus 634 aVHH~GlLPivKE~VE~LFq--rGlVKV-LFATETFAMGVNMPARt-vVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRG 709 (1248)
T KOG0947|consen 634 AVHHGGLLPIVKEVVELLFQ--RGLVKV-LFATETFAMGVNMPART-VVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRG 709 (1248)
T ss_pred hhhcccchHHHHHHHHHHHh--cCceEE-EeehhhhhhhcCCCcee-EEeeehhhccCcceeecCChhHHhhhccccccc
Confidence 22233332222222223454 334555 89999999999999544 44432 2457999999999999998
Q ss_pred h
Q psy10684 173 R 173 (288)
Q Consensus 173 q 173 (288)
-
T Consensus 710 l 710 (1248)
T KOG0947|consen 710 L 710 (1248)
T ss_pred c
Confidence 4
No 219
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=93.65 E-value=0.89 Score=45.07 Aligned_cols=93 Identities=14% Similarity=0.234 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc-CcEEEEeeCCCCHHHHHHHHHhhcCC--CCCeeEEEEecccc
Q psy10684 61 VVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR-GFKYCRLDGQTAHEDRQRQINDFNME--GSDIFIFMLSTRAG 137 (288)
Q Consensus 61 ~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~-~~~~~~~~G~~~~~~R~~~i~~F~~~--~~~~~vll~s~~~~ 137 (288)
..+.+.|..+...+.+++||..+-.+++.+...|... +. .+...|.. .|.++++.|+.. ..+..| |+.+..-
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~-~ll~Q~~~---~~~~ll~~f~~~~~~~~~~V-L~g~~sf 595 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRL-MLLVQGDQ---PRQRLLEKHKKRVDEGEGSV-LFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCC-cEEEeCCc---hHHHHHHHHHHHhccCCCeE-EEEeccc
Confidence 3555555554445556788887888888888888643 33 34556643 577888878621 122234 6667889
Q ss_pred ccccccc--ccceeEEecCCCCc
Q psy10684 138 GLGINLA--TADVVVLYDSDWNP 158 (288)
Q Consensus 138 ~~Glnl~--~a~~vi~~d~~wnp 158 (288)
.+|+|++ .++.||+.-.|+-+
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~ 618 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAV 618 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCC
Confidence 9999998 47999999988853
No 220
>KOG0922|consensus
Probab=93.40 E-value=0.55 Score=45.13 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=76.4
Q ss_pred CCeEEEEecchHHHHHHHHHHhhc--Cc------EEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccc
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWR--GF------KYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT 145 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~--~~------~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~ 145 (288)
..-++||-.-.+.++...+.|.+. .. -+..++|.++.++..++ |....++.+-++++|+.+...+++.+
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~G 334 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDG 334 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecc
Confidence 457999999999999988888765 11 24679999999887655 65444466667999999999999999
Q ss_pred cceeEEec----CCCCcc-----------hhhhhhHHHHHHhhhcch
Q psy10684 146 ADVVVLYD----SDWNPQ-----------MDLQAMVREAKILRRGSI 177 (288)
Q Consensus 146 a~~vi~~d----~~wnp~-----------~~~Qa~~R~~R~Gq~~~v 177 (288)
..+||--. ..|||. .-.||.-|+||.|++++-
T Consensus 335 I~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pG 381 (674)
T KOG0922|consen 335 IRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPG 381 (674)
T ss_pred eEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCc
Confidence 99987432 234542 345788888888888875
No 221
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.28 E-value=0.55 Score=47.39 Aligned_cols=88 Identities=16% Similarity=0.249 Sum_probs=68.9
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecc---hHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe-
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQM---TRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS- 133 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~---~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s- 133 (288)
.-...+.++++. -|.-.|||.+. .+..+.|.+.|+.+|+++..++.. ..+.++.|. .+++.+++-.
T Consensus 322 ~~~e~~~elvk~---lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~--~GeidvLVGvA 391 (1187)
T COG1110 322 ESLEKVVELVKK---LGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFE--EGEVDVLVGVA 391 (1187)
T ss_pred ccHHHHHHHHHH---hCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhc--cCceeEEEEec
Confidence 344455555554 45688999999 889999999999999999998873 256899997 5666665543
Q ss_pred --ccccccccccc-ccceeEEecCC
Q psy10684 134 --TRAGGLGINLA-TADVVVLYDSD 155 (288)
Q Consensus 134 --~~~~~~Glnl~-~a~~vi~~d~~ 155 (288)
..+.-+||||+ .+.++|++..|
T Consensus 392 syYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 392 SYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ccccceeecCCchhheeEEEEecCC
Confidence 45788999999 79999999987
No 222
>PRK14701 reverse gyrase; Provisional
Probab=93.20 E-value=5.1 Score=43.56 Aligned_cols=80 Identities=9% Similarity=0.057 Sum_probs=56.4
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh------cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCe
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW------RGFKYCRLDGQTAHEDRQRQINDFNMEGSDI 127 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~------~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~ 127 (288)
...|+|.....-+.......+.++||.+.....+..+...|.. .++....++|+++..++.+.++.+.. +..
T Consensus 102 PTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~--g~~ 179 (1638)
T PRK14701 102 PTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIEN--GDF 179 (1638)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhc--CCC
Confidence 3478999853333322334567999999999988877777765 25677889999999998888888863 334
Q ss_pred eEEEEecc
Q psy10684 128 FIFMLSTR 135 (288)
Q Consensus 128 ~vll~s~~ 135 (288)
.|++.++.
T Consensus 180 dILV~TPg 187 (1638)
T PRK14701 180 DILVTTAQ 187 (1638)
T ss_pred CEEEECCc
Confidence 55555544
No 223
>PRK01172 ski2-like helicase; Provisional
Probab=92.85 E-value=0.12 Score=50.97 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=49.9
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC---------CChhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD---------WNPQMDLQAMVRT 283 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~---------wnp~~~~Qa~~Ra 283 (288)
....+|+++.++|..+.+.|. +..++| |+++.+.+.|+|+.+ .+||+.|.. +.+..-.|.++||
T Consensus 288 v~~~hagl~~~eR~~ve~~f~--~g~i~V-LvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRA 360 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFR--NRYIKV-IVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRA 360 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHH--cCCCeE-EEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcC
Confidence 456799999999999999998 556665 556689999999875 788887643 3444456999998
No 224
>KOG0351|consensus
Probab=92.84 E-value=0.67 Score=47.07 Aligned_cols=203 Identities=13% Similarity=0.123 Sum_probs=119.2
Q ss_pred EEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc--ccc-----ccc-----
Q psy10684 78 LIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL--GIN-----LAT----- 145 (288)
Q Consensus 78 iIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~--Gln-----l~~----- 145 (288)
||-|.-...+.--...|...+|+.+.++|.++..+|..+.+....+.+.++++.+++..... ++. |..
T Consensus 308 vVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~la 387 (941)
T KOG0351|consen 308 VVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLA 387 (941)
T ss_pred EEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeE
Confidence 44455555555555666778999999999999999999999999777789999998774333 322 111
Q ss_pred ------cceeEEecCCCCcchhhhhhHHHHHHh-----hhcchHHHHHHHhhhh-ccccchhhhh---------------
Q psy10684 146 ------ADVVVLYDSDWNPQMDLQAMVREAKIL-----RRGSIKKALEAKMSRY-RAPFHQLRIA--------------- 198 (288)
Q Consensus 146 ------a~~vi~~d~~wnp~~~~Qa~~R~~R~G-----q~~~v~~~i~~~~~~~-~~~~~~~~~~--------------- 198 (288)
|+.|=.+-.++-|.--.+..-|....+ -|-+....+.+.+.+- ......+...
T Consensus 388 l~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~ 467 (941)
T KOG0351|consen 388 LFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKT 467 (941)
T ss_pred EEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEecc
Confidence 111212222333332222222222222 1111112222221111 0000000000
Q ss_pred -------------------------hccCCCccccc--ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecc
Q psy10684 199 -------------------------YGANKGKNYTE--EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 251 (288)
Q Consensus 199 -------------------------~~~~~~~~~~e--~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~a 251 (288)
....+...+.. ...++....++.+++..+|+.+-.+|. ...+.|. +-+-|
T Consensus 468 ~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~--~~~~~Vi-vATVA 544 (941)
T KOG0351|consen 468 DKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWM--SDKIRVI-VATVA 544 (941)
T ss_pred CccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHh--cCCCeEE-EEEee
Confidence 00000000000 123567778899999999999999998 3445544 45588
Q ss_pred cccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 252 GGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 252 gg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
=|.|++-..---||.+..+-+-.-.-|..+||
T Consensus 545 FGMGIdK~DVR~ViH~~lPks~E~YYQE~GRA 576 (941)
T KOG0351|consen 545 FGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRA 576 (941)
T ss_pred ccCCCCCCceeEEEECCCchhHHHHHHhcccc
Confidence 99999999999999999997777777999999
No 225
>KOG0326|consensus
Probab=92.71 E-value=0.075 Score=46.56 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=63.5
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.|+..-+++.+|.++.|.++-.+|. +..|+.+++| .--.-|++.++.|.||.+|-+-||......|+|+
T Consensus 344 elGyscyyiHakM~Q~hRNrVFHdFr--~G~crnLVct-DL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRs 413 (459)
T KOG0326|consen 344 ELGYSCYYIHAKMAQEHRNRVFHDFR--NGKCRNLVCT-DLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRS 413 (459)
T ss_pred hccchhhHHHHHHHHhhhhhhhhhhh--ccccceeeeh-hhhhcccccceeeEEEecCCCCCHHHHHHHccCC
Confidence 56899999999999999999999998 7778888877 4555799999999999999999999999999998
No 226
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=92.57 E-value=2.3 Score=44.70 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=55.7
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc----CcEEE---EeeCCCCHHHHHHHHHhhcCCCCC
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR----GFKYC---RLDGQTAHEDRQRQINDFNMEGSD 126 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~----~~~~~---~~~G~~~~~~R~~~i~~F~~~~~~ 126 (288)
...|+|....+-++..+...+.+++|.+..+..+..+...+... ++... .+||+++..++.+.++.+.. ++
T Consensus 101 pTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~--~~ 178 (1171)
T TIGR01054 101 PTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIEN--GD 178 (1171)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhc--CC
Confidence 34789998665555555556789999999999888777665543 44433 57999999998888888873 33
Q ss_pred eeEEEEecc
Q psy10684 127 IFIFMLSTR 135 (288)
Q Consensus 127 ~~vll~s~~ 135 (288)
..|++.++.
T Consensus 179 ~dIlV~Tp~ 187 (1171)
T TIGR01054 179 FDILITTTM 187 (1171)
T ss_pred CCEEEECHH
Confidence 445554443
No 227
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.51 E-value=1.6 Score=43.21 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=69.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc-CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR-GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~-~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
.|+|....+..+......+.++||.+........+.+.|+.. |.....+||+++..+|.+.......+ ...| ++.|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g--~~~I-VVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG--EAKV-VIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC--CCCE-EEec
Confidence 689999988888777777889999999999988888888764 78899999999999998887777633 3445 4444
Q ss_pred ccccccccccccceeEEec
Q psy10684 135 RAGGLGINLATADVVVLYD 153 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d 153 (288)
..+. =+.+.....||.-|
T Consensus 249 rsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred cHHh-cccccCCCEEEEEC
Confidence 4222 23444555555544
No 228
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.26 E-value=0.13 Score=50.48 Aligned_cols=96 Identities=15% Similarity=0.137 Sum_probs=65.8
Q ss_pred hhhhccccchhhhhhccCCCccccc---ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcccc
Q psy10684 185 MSRYRAPFHQLRIAYGANKGKNYTE---EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATA 261 (288)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~e---~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a 261 (288)
+.++.....+++++.......+... .+.|+....++|+++..+|.+.+.+|. ...+.| ++++..-+-|+++...
T Consensus 435 I~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr--~G~i~V-LV~t~~L~rGfDiP~v 511 (655)
T TIGR00631 435 IRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLR--LGEFDV-LVGINLLREGLDLPEV 511 (655)
T ss_pred HHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHh--cCCceE-EEEcChhcCCeeeCCC
Confidence 3334444555555543332222111 234777788899999999999999997 445554 4566888899999999
Q ss_pred ceEEEeCCC-----CChhhhhhhhhhh
Q psy10684 262 DVVVLYDSD-----WNPQMDLQAMVRT 283 (288)
Q Consensus 262 ~~v~~~d~~-----wnp~~~~Qa~~Ra 283 (288)
+.|+++|.+ -+...--|-++||
T Consensus 512 ~lVvi~DadifG~p~~~~~~iqriGRa 538 (655)
T TIGR00631 512 SLVAILDADKEGFLRSERSLIQTIGRA 538 (655)
T ss_pred cEEEEeCcccccCCCCHHHHHHHhcCC
Confidence 999999954 2444556999987
No 229
>KOG0332|consensus
Probab=92.17 E-value=0.19 Score=45.04 Aligned_cols=70 Identities=26% Similarity=0.322 Sum_probs=57.2
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC------Chhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW------NPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w------np~~~~Qa~~Ra 283 (288)
.+|.....++|.+..++|..++++|+ ...-+| |+++..-+-|++...-|.||.||.+- .|.+..+.|+|+
T Consensus 352 ~~Gh~V~~l~G~l~~~~R~~ii~~Fr--~g~~kV-LitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRt 427 (477)
T KOG0332|consen 352 AEGHQVSLLHGDLTVEQRAAIIDRFR--EGKEKV-LITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRT 427 (477)
T ss_pred hcCceeEEeeccchhHHHHHHHHHHh--cCcceE-EEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccc
Confidence 45788899999999999999999999 333354 55778888999999999999999874 244555888887
No 230
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=92.12 E-value=1.5 Score=42.75 Aligned_cols=96 Identities=8% Similarity=0.069 Sum_probs=61.8
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCC-CCeeEEEEecccccccccc--------
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEG-SDIFIFMLSTRAGGLGINL-------- 143 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~-~~~~vll~s~~~~~~Glnl-------- 143 (288)
.|.-.+.|+++.. +..+...|...---.+.+.|.. ..|..++++|+... .+..-+|+.|.+..+|+|+
T Consensus 470 ~G~~lvLfTS~~~-~~~~~~~l~~~l~~~~l~qg~~--~~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 470 QGGTLVLTTAFSH-ISAIGQLVELGIPAEIVIQSEK--NRLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred CCCEEEEechHHH-HHHHHHHHHhhcCCCEEEeCCC--ccHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 3556666776554 4556666654321235556644 25677999998420 1112248899999999999
Q ss_pred --cccceeEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 144 --ATADVVVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 144 --~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
...+.||+...|+-|.... .|..|+-++
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~---a~~~~~~~~ 576 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSL---SMLKRIRKT 576 (636)
T ss_pred CCCcccEEEEEeCCCCcCChH---HHHHHHHhc
Confidence 3689999999998874433 666666443
No 231
>KOG0340|consensus
Probab=92.09 E-value=0.18 Score=44.91 Aligned_cols=71 Identities=20% Similarity=0.308 Sum_probs=61.3
Q ss_pred ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 210 EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 210 ~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+..+++...+++.|++.+|-.++.+|. ....++++ -+..++-||+...-+.|+.+|.+-.|-..-+.++|.
T Consensus 275 ~~le~r~~~lHs~m~Q~eR~~aLsrFr--s~~~~ili-aTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRt 345 (442)
T KOG0340|consen 275 KNLEVRVVSLHSQMPQKERLAALSRFR--SNAARILI-ATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRT 345 (442)
T ss_pred hhhceeeeehhhcchHHHHHHHHHHHh--hcCccEEE-EechhhcCCCCCceeEEEecCCCCCHHHHHHhhcch
Confidence 455788899999999999999999998 44456555 458888999999999999999999999999888875
No 232
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=91.85 E-value=0.14 Score=50.21 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=67.0
Q ss_pred hhhhccccchhhhhhccCCCccccc---ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcccc
Q psy10684 185 MSRYRAPFHQLRIAYGANKGKNYTE---EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATA 261 (288)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~e---~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a 261 (288)
+.++.....+++++.......+... .+.|+....++|+++..+|.+++.+|. ...+.| ++++..-+-|+++...
T Consensus 439 L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~--~g~i~v-lV~t~~L~rGfdlp~v 515 (652)
T PRK05298 439 IRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLR--LGEFDV-LVGINLLREGLDIPEV 515 (652)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHH--cCCceE-EEEeCHHhCCccccCC
Confidence 3344444555555443322222111 244778888899999999999999997 444444 4566888899999999
Q ss_pred ceEEEeCCC-----CChhhhhhhhhhh
Q psy10684 262 DVVVLYDSD-----WNPQMDLQAMVRT 283 (288)
Q Consensus 262 ~~v~~~d~~-----wnp~~~~Qa~~Ra 283 (288)
+.|+++|.+ -++..--|.++|+
T Consensus 516 ~lVii~d~eifG~~~~~~~yiqr~GR~ 542 (652)
T PRK05298 516 SLVAILDADKEGFLRSERSLIQTIGRA 542 (652)
T ss_pred cEEEEeCCcccccCCCHHHHHHHhccc
Confidence 999999963 3666777999997
No 233
>KOG0352|consensus
Probab=91.26 E-value=2.5 Score=38.82 Aligned_cols=214 Identities=15% Similarity=0.134 Sum_probs=126.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.++|-- --.|..+...+ =.||||.....+.-=-..|....+++-.+++.++..+|.+++.......+.+++|.+++.
T Consensus 46 GaGKSL--CyQLPaL~~~g-ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE 122 (641)
T KOG0352|consen 46 GAGKSL--CYQLPALVHGG-ITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPE 122 (641)
T ss_pred CCchhh--hhhchHHHhCC-eEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchh
Confidence 455533 22333344444 678898877665555566777889999999999999999999999988889999888876
Q ss_pred ccccc-c----c-c-----------cccceeEEecCCCCcchhhhhhHHHHHHhhhc-----------------ch----
Q psy10684 136 AGGLG-I----N-L-----------ATADVVVLYDSDWNPQMDLQAMVREAKILRRG-----------------SI---- 177 (288)
Q Consensus 136 ~~~~G-l----n-l-----------~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~-----------------~v---- 177 (288)
-++.. . | | ..|+.|=....++-|.-. |.|.-+ .|
T Consensus 123 ~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL--------~LG~LRS~~~~vpwvALTATA~~~VqEDi 194 (641)
T KOG0352|consen 123 GAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYL--------TLGSLRSVCPGVPWVALTATANAKVQEDI 194 (641)
T ss_pred hhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchh--------hhhhHHhhCCCCceEEeecccChhHHHHH
Confidence 54432 1 1 0 112222222223333211 122111 11
Q ss_pred ----------------------------HHHHHHHhhhhccccchhhhhh----ccCCCc-----------c------cc
Q psy10684 178 ----------------------------KKALEAKMSRYRAPFHQLRIAY----GANKGK-----------N------YT 208 (288)
Q Consensus 178 ----------------------------~~~i~~~~~~~~~~~~~~~~~~----~~~~~~-----------~------~~ 208 (288)
++.|++.+.-+..+....+... ...++. + +.
T Consensus 195 ~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~ 274 (641)
T KOG0352|consen 195 AFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIM 274 (641)
T ss_pred HHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHH
Confidence 2333333332222221111100 000000 0 00
Q ss_pred cccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 209 EEEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 209 e~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
....|+....++.+....+|..+.+++- +.++.|+.. +-.=|.|.+-..--.||..+++-|-+..-|--+||
T Consensus 275 l~~~Gi~A~AYHAGLK~~ERTeVQe~WM--~~~~PvI~A-T~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRA 346 (641)
T KOG0352|consen 275 LEIAGIPAMAYHAGLKKKERTEVQEKWM--NNEIPVIAA-TVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRA 346 (641)
T ss_pred hhhcCcchHHHhcccccchhHHHHHHHh--cCCCCEEEE-EeccccccCCcceeEEEecCchhhhHHHHHhcccc
Confidence 1123667777788889999999999997 444555443 35567888888888888888888888888988888
No 234
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=91.17 E-value=0.26 Score=44.50 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=48.4
Q ss_pred hhcccCCCccccchhHH----HhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQ----INDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~----i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
....++|.++..+|.+. +++|. +.... .|+++.+.+.|+++ ..+.+|.++.+ +..-.|.++|+
T Consensus 250 ~~~~~h~~~~~~~r~~~~~~~~~~f~--~~~~~-ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~ 316 (358)
T TIGR01587 250 EIMLLHSRFTEKDRAKKEAELLEEMK--KNEKF-VIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRL 316 (358)
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhc--CCCCe-EEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccc
Confidence 46678999999998764 78887 34444 46677899999999 47888887654 56667999997
No 235
>KOG0327|consensus
Probab=91.09 E-value=0.27 Score=44.05 Aligned_cols=70 Identities=16% Similarity=0.308 Sum_probs=59.9
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
..++....++|.+.+.+|..+..+|+ ..+.+|++ ++.-.+-|++++..+.|+.||.+=|+.+.-..++|+
T Consensus 285 ~~~~~~s~~~~d~~q~~R~~~~~ef~--~gssrvlI-ttdl~argidv~~~slvinydlP~~~~~yihR~gr~ 354 (397)
T KOG0327|consen 285 AHGFTVSAIHGDMEQNERDTLMREFR--SGSSRVLI-TTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRA 354 (397)
T ss_pred hCCceEEEeecccchhhhhHHHHHhh--cCCceEEe-eccccccccchhhcceeeeeccccchhhhhhhcccc
Confidence 45778888999999999999999998 44446555 556677999999999999999999999988888887
No 236
>PRK09401 reverse gyrase; Reviewed
Probab=90.98 E-value=4.4 Score=42.66 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=49.3
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEe---ecccccCCCccc-cceEEEeCCCC------Chhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS---TRAGGLGINLAT-ADVVVLYDSDW------NPQMDLQAM 280 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s---~~agg~glnl~~-a~~v~~~d~~w------np~~~~Qa~ 280 (288)
..|+....++|++ ++.+++|. +.++.|++.+ +...+-||++.. -.+||+||.|- .......++
T Consensus 353 ~~gi~v~~~hg~l-----~~~l~~F~--~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~ 425 (1176)
T PRK09401 353 DLGINAELAISGF-----ERKFEKFE--EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLL 425 (1176)
T ss_pred HCCCcEEEEeCcH-----HHHHHHHH--CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHH
Confidence 3478888899999 33569997 6677787775 577899999998 89999999985 334444555
Q ss_pred hhh
Q psy10684 281 VRT 283 (288)
Q Consensus 281 ~Ra 283 (288)
.|.
T Consensus 426 ~r~ 428 (1176)
T PRK09401 426 LRL 428 (1176)
T ss_pred HHH
Confidence 554
No 237
>KOG1133|consensus
Probab=90.73 E-value=6.2 Score=38.52 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=78.8
Q ss_pred HhcCCCccchHHHHHHHHH------HHhhcCCCCCC--------CCCCCCCCCCCCccccccCc-hHHHHHHHHHHHHhC
Q psy10684 9 VVNGAGKLEKMRLQNILMQ------LRKCSNHPYLF--------DGAEPGPPYTTDEHLVFNSG-KMVVLDKLLPKLKAQ 73 (288)
Q Consensus 9 ~~~~~~~~~~~~~~~~l~~------Lrq~~~hP~l~--------~~~~~~~~~~~~~~~~~~s~-K~~~l~~ll~~~~~~ 73 (288)
.++||.+.....+.+.|.. ...-|+|-.-. .....+.+..-. .....|+ =++.|-..+..+..-
T Consensus 549 vLAGGTMeP~~e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv~~gpsg~p~eft-f~~R~s~~~l~~l~~~~~nL~~~ 627 (821)
T KOG1133|consen 549 VLAGGTMEPVDELREQLFPGCPERISPFSCSHVIPPENILPLVVSSGPSGQPLEFT-FETRESPEMIKDLGSSISNLSNA 627 (821)
T ss_pred eecCCccccHHHHHHHhcccchhhccceecccccChhheeeeeeccCCCCCceEEE-eeccCChHHHHHHHHHHHHHHhh
Confidence 3568888888887777765 34466774321 111111111100 0011222 222333333333222
Q ss_pred -CCeEEEEecchHHHHHHHHHHhhcCcE-------EEEeeCCCCHHHHHHHHHhhcCCCCC-eeEEEEe--ccccccccc
Q psy10684 74 -ESRVLIFSQMTRMLDILEDYCYWRGFK-------YCRLDGQTAHEDRQRQINDFNMEGSD-IFIFMLS--TRAGGLGIN 142 (288)
Q Consensus 74 -~~kviIFs~~~~~~~~l~~~l~~~~~~-------~~~~~G~~~~~~R~~~i~~F~~~~~~-~~vll~s--~~~~~~Gln 142 (288)
..-||+|..+-+.+..+.+.++..|+- .+.+....+ -..+++.|...... .-.+|++ -.-.++|+|
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 468999999999999999998877652 222322222 24456666521111 1123433 345678999
Q ss_pred cc--ccceeEEecCCCC
Q psy10684 143 LA--TADVVVLYDSDWN 157 (288)
Q Consensus 143 l~--~a~~vi~~d~~wn 157 (288)
+. -+..|+.+..|+-
T Consensus 705 F~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccccEEEEeecCCC
Confidence 98 5888999988874
No 238
>PRK00254 ski2-like helicase; Provisional
Probab=90.35 E-value=0.23 Score=49.37 Aligned_cols=66 Identities=20% Similarity=0.149 Sum_probs=48.7
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE-------eCCCCChhh-hhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL-------YDSDWNPQM-DLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~-------~d~~wnp~~-~~Qa~~Ra 283 (288)
.....+|+++.++|..+.+.|. +..++| |+++.+-+.|+|+.+.+.||. ++....|.. -.|-++||
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~--~G~i~V-LvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRA 370 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFR--EGLIKV-ITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRA 370 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHH--CCCCeE-EEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhcc
Confidence 4667899999999999999998 556665 556688899999987666653 222233433 37999998
No 239
>KOG0923|consensus
Probab=89.95 E-value=1 Score=43.44 Aligned_cols=93 Identities=11% Similarity=0.107 Sum_probs=64.3
Q ss_pred cCchHHHHHHHHHHH---H--hCCCeEEEEecchHHHHHHHHHHhhc---------CcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKL---K--AQESRVLIFSQMTRMLDILEDYCYWR---------GFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~---~--~~~~kviIFs~~~~~~~~l~~~l~~~---------~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..+-.+++...+..+ . +...-+|||-.-.+.++..++.|... .+-.+.++.+.+.+...++ |.
T Consensus 450 ~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---Fe 526 (902)
T KOG0923|consen 450 KAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FE 526 (902)
T ss_pred cCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cC
Confidence 344455555554432 1 22457899988777777666665443 3568899999998877655 55
Q ss_pred CCCCCeeEEEEecccccccccccccceeEE
Q psy10684 122 MEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 122 ~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
...++.+-+++.|+.+-..|++.+..+||-
T Consensus 527 PtP~gaRKVVLATNIAETSlTIdgI~yViD 556 (902)
T KOG0923|consen 527 PTPPGARKVVLATNIAETSLTIDGIKYVID 556 (902)
T ss_pred CCCCCceeEEEeecchhhceeecCeEEEec
Confidence 444555556889999999999999998874
No 240
>PRK14873 primosome assembly protein PriA; Provisional
Probab=89.85 E-value=2.7 Score=41.41 Aligned_cols=78 Identities=17% Similarity=0.046 Sum_probs=64.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc-C-cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR-G-FKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~-~-~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
.|+|.+..++++......|..+||-..-......+...|+.. | ..+..+|++++..+|.+.-.+... +..+| ++-
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~--G~~~I-ViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR--GQARV-VVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC--CCCcE-EEE
Confidence 689999999999999899999999999999988888888765 3 678999999999999988888763 44455 444
Q ss_pred ccc
Q psy10684 134 TRA 136 (288)
Q Consensus 134 ~~~ 136 (288)
|.+
T Consensus 247 tRS 249 (665)
T PRK14873 247 TRS 249 (665)
T ss_pred cce
Confidence 443
No 241
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.62 E-value=3.1 Score=41.34 Aligned_cols=96 Identities=13% Similarity=0.189 Sum_probs=63.8
Q ss_pred HHHHHHHHHHh-CCCeEEEEecchHHHHHHHHHHhhcCc-------EEEEeeCCCCHHHHHHHHHhhcCC--CCCeeEEE
Q psy10684 62 VLDKLLPKLKA-QESRVLIFSQMTRMLDILEDYCYWRGF-------KYCRLDGQTAHEDRQRQINDFNME--GSDIFIFM 131 (288)
Q Consensus 62 ~l~~ll~~~~~-~~~kviIFs~~~~~~~~l~~~l~~~~~-------~~~~~~G~~~~~~R~~~i~~F~~~--~~~~~vll 131 (288)
.+.+.|.++.. ....++||..+-..++.+...+...++ ..+.+.+.- ..++.+++++|+.. .++-. +|
T Consensus 509 ~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-~~~~~~~l~~f~~~~~~~~ga-vL 586 (705)
T TIGR00604 509 NLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-AQETSDALERYKQAVSEGRGA-VL 586 (705)
T ss_pred HHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-cchHHHHHHHHHHHHhcCCce-EE
Confidence 44455544433 357889998888888888877765432 233444432 26789999999732 11122 35
Q ss_pred Eec--cccccccccc--ccceeEEecCCC-Ccc
Q psy10684 132 LST--RAGGLGINLA--TADVVVLYDSDW-NPQ 159 (288)
Q Consensus 132 ~s~--~~~~~Glnl~--~a~~vi~~d~~w-np~ 159 (288)
++. ..-++|+|+. .+..||.+..|+ +|.
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~ 619 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTE 619 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCCCCCC
Confidence 555 6789999999 489999999998 543
No 242
>KOG0335|consensus
Probab=89.49 E-value=0.43 Score=44.35 Aligned_cols=70 Identities=19% Similarity=0.343 Sum_probs=58.0
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
..++.+..++|..+..+|.++++.|. +..+.+++. +....=||+...-.|||.||.+=+-.-.-+.|+|.
T Consensus 359 ~~~~~~~sIhg~~tq~er~~al~~Fr--~g~~pvlVa-T~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRT 428 (482)
T KOG0335|consen 359 SNGYPAKSIHGDRTQIEREQALNDFR--NGKAPVLVA-TNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRT 428 (482)
T ss_pred cCCCCceeecchhhhhHHHHHHHHhh--cCCcceEEE-ehhhhcCCCCCCCceeEEeecCcchhhHHHhcccc
Confidence 45789999999999999999999998 555565554 47778999999999999999997755555777764
No 243
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=89.33 E-value=0.41 Score=48.14 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=55.2
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC----CChhh-------------
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD----WNPQM------------- 275 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~----wnp~~------------- 275 (288)
++....++|+++.++|.++++.|. +...+| ++++..+..|+++...++||.++.. +||..
T Consensus 236 ~~~v~pLHg~L~~~eq~~~~~~~~--~G~rkV-lVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 312 (819)
T TIGR01970 236 DVLICPLYGELSLAAQDRAIKPDP--QGRRKV-VLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQA 312 (819)
T ss_pred CcEEEEecCCCCHHHHHHHHhhcc--cCCeEE-EEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHH
Confidence 577888999999999999999987 444554 5678999999999999999999865 56654
Q ss_pred -hhhhhhhh
Q psy10684 276 -DLQAMVRT 283 (288)
Q Consensus 276 -~~Qa~~Ra 283 (288)
-.|..+||
T Consensus 313 sa~QR~GRA 321 (819)
T TIGR01970 313 SATQRAGRA 321 (819)
T ss_pred HHHhhhhhc
Confidence 34777777
No 244
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=89.26 E-value=4 Score=31.71 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccc--cceeEEecCCCC
Q psy10684 108 TAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT--ADVVVLYDSDWN 157 (288)
Q Consensus 108 ~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~--a~~vi~~d~~wn 157 (288)
....+...+++.|+.. .+.. +|+++...++|+|+++ +..||+...|+-
T Consensus 31 ~~~~~~~~~l~~f~~~-~~~~-iL~~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 31 EDGKETGKLLEKYVEA-CENA-ILLATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred CChhHHHHHHHHHHHc-CCCE-EEEEccceecceecCCCCeeEEEEEecCCC
Confidence 3344678899999833 2223 4677666999999994 678999998874
No 245
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=88.84 E-value=0.63 Score=48.46 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=54.1
Q ss_pred cccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 217 CRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 217 ~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
..++|+++ ++++.+++|. + +....+++|...-++|.+....+.|+++.|.-++..-.|.++|+.
T Consensus 735 ~~itg~~~--~~~~li~~Fk-~-~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgt 798 (1123)
T PRK11448 735 IKITGSID--KPDQLIRRFK-N-ERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRAT 798 (1123)
T ss_pred EEEeCCcc--chHHHHHHHh-C-CCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhc
Confidence 34677765 6788999998 4 344467778899999999999999999999999999999999984
No 246
>KOG0948|consensus
Probab=88.65 E-value=2 Score=42.21 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=63.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE---------------------------------------EEEeeCCCCHHH
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK---------------------------------------YCRLDGQTAHED 112 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~---------------------------------------~~~~~G~~~~~~ 112 (288)
.+...|||||-++..++..+..+.+..++ ...-|++.=+--
T Consensus 381 ~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIl 460 (1041)
T KOG0948|consen 381 RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPIL 460 (1041)
T ss_pred hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHH
Confidence 45689999999999999888666544332 112233322222
Q ss_pred HHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEec---------CCCCcchhhhhhHHHHHHhhh
Q psy10684 113 RQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD---------SDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 113 R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d---------~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
++-+=-.|+ .+=++| |..|..-+-|||++. .+|++-. .|-+.+.|.|.-||+||-|-.
T Consensus 461 KE~IEILFq--EGLvKv-LFATETFsiGLNMPA-kTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~D 527 (1041)
T KOG0948|consen 461 KEVIEILFQ--EGLVKV-LFATETFSIGLNMPA-KTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGID 527 (1041)
T ss_pred HHHHHHHHh--ccHHHH-HHhhhhhhhccCCcc-eeEEEeeccccCCcceeeecccceEEecccccccCCC
Confidence 222222454 333455 789999999999985 4455442 244678999999999999843
No 247
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=88.39 E-value=29 Score=36.16 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=121.9
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc----CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR----GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.-+|.+..++-.=.....|.+|.|.+..+-.+..=.+-++.+ +++...+.-=.+.++...+++.-. ++.+.+++
T Consensus 625 GFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la--~G~vDIvI 702 (1139)
T COG1197 625 GFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLA--EGKVDIVI 702 (1139)
T ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHh--cCCccEEE
Confidence 457888777766666677899999998876655444444443 677777777788889999999987 56777777
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHH-------------------------hhhc-----------
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI-------------------------LRRG----------- 175 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~-------------------------Gq~~----------- 175 (288)
-+-+..+.++...+-.-+|. .++|+.|=-|.- .-.|
T Consensus 703 GTHrLL~kdv~FkdLGLlII--------DEEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP 774 (1139)
T COG1197 703 GTHRLLSKDVKFKDLGLLII--------DEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP 774 (1139)
T ss_pred echHhhCCCcEEecCCeEEE--------echhhcCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC
Confidence 66666666666555555544 245544321110 0000
Q ss_pred ----ch--------HHHHHHHhhhhccccchhhhhhccCCC-cccccc----cchhhhcccCCCccccchhHHHhhcccC
Q psy10684 176 ----SI--------KKALEAKMSRYRAPFHQLRIAYGANKG-KNYTEE----EDRYLYCRLDGQTAHEDRQRQINDFNME 238 (288)
Q Consensus 176 ----~v--------~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~----~~gi~~~~l~G~~~~~~R~~~i~~f~~~ 238 (288)
+| ...|.+-+.+-.....++..-...-.. .+..++ --..++...+|.|+..+-.+.+.+|.
T Consensus 775 ~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~-- 852 (1139)
T COG1197 775 EDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFY-- 852 (1139)
T ss_pred CCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHH--
Confidence 00 122322222222222222111111111 111111 11356778899999999999999998
Q ss_pred CCCeeEEEEeecccccCCCccccceEEEeCCC
Q psy10684 239 GSDIFIFMLSTRAGGLGINLATADVVVLYDSD 270 (288)
Q Consensus 239 ~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~ 270 (288)
+....|++++ +-=-.|+++.-||++|+-+-+
T Consensus 853 ~g~~dVLv~T-TIIEtGIDIPnANTiIIe~AD 883 (1139)
T COG1197 853 NGEYDVLVCT-TIIETGIDIPNANTIIIERAD 883 (1139)
T ss_pred cCCCCEEEEe-eeeecCcCCCCCceEEEeccc
Confidence 5555566654 666789999999999997665
No 248
>KOG0341|consensus
Probab=88.15 E-value=0.36 Score=43.52 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=57.0
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|.....++|.-.+++|..+|+.|. ...-.| |+.+..++-||+...-.|||.||-+=.-.+.-+.|+|.
T Consensus 444 KGVEavaIHGGKDQedR~~ai~afr--~gkKDV-LVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRT 512 (610)
T KOG0341|consen 444 KGVEAVAIHGGKDQEDRHYAIEAFR--AGKKDV-LVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRT 512 (610)
T ss_pred ccceeEEeecCcchhHHHHHHHHHh--cCCCce-EEEecchhccCCCccchhhccCCChHHHHHHHHHhccc
Confidence 4788899999999999999999998 333234 45668889999999999999999886666666888774
No 249
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=87.55 E-value=2.5 Score=41.82 Aligned_cols=77 Identities=21% Similarity=0.157 Sum_probs=65.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc-CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR-GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~-~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
..|+|.+..++++......|..+||-..-......+...|+.+ |.+...+|++.+..+|.+.-.+.. .+..+|++-+
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~--~G~~~vVIGt 303 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRAR--RGEARVVIGT 303 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHh--cCCceEEEEe
Confidence 3699999999999999999999999998888888777777766 789999999999999999988887 4555564433
No 250
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=87.54 E-value=1.2 Score=44.05 Aligned_cols=88 Identities=18% Similarity=0.301 Sum_probs=63.5
Q ss_pred HHHHHHHHhhc--CcEEEEeeCCCCHHH--HHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCC--CCcc-
Q psy10684 87 LDILEDYCYWR--GFKYCRLDGQTAHED--RQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD--WNPQ- 159 (288)
Q Consensus 87 ~~~l~~~l~~~--~~~~~~~~G~~~~~~--R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~--wnp~- 159 (288)
.+.+++.|... +.++.++++.+...+ -...++.|..+..+ | |+-|.--+.|+|+++.+-|..+|.+ .+..
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~d--I-LiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~D 569 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEAD--I-LIGTQMIAKGHDFPNVTLVGVLDADTGLGSPD 569 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCC--e-eecchhhhcCCCcccceEEEEEechhhhcCCC
Confidence 34566666654 778899998876543 45789999854444 3 8899999999999999888777654 2222
Q ss_pred ---------hhhhhhHHHHHHhhhcch
Q psy10684 160 ---------MDLQAMVREAKILRRGSI 177 (288)
Q Consensus 160 ---------~~~Qa~~R~~R~Gq~~~v 177 (288)
.+.|..||++|.+..+.|
T Consensus 570 fRA~Er~fqll~QvaGRAgR~~~~G~V 596 (730)
T COG1198 570 FRASERTFQLLMQVAGRAGRAGKPGEV 596 (730)
T ss_pred cchHHHHHHHHHHHHhhhccCCCCCeE
Confidence 335999999998665543
No 251
>KOG0924|consensus
Probab=87.27 E-value=0.99 Score=43.79 Aligned_cols=116 Identities=13% Similarity=0.139 Sum_probs=73.6
Q ss_pred chHHHHHHHHHHH---H--hCCCeEEEEecchHH----HHHHHHHHhhc------CcEEEEeeCCCCHHHHHHHHHhhcC
Q psy10684 58 GKMVVLDKLLPKL---K--AQESRVLIFSQMTRM----LDILEDYCYWR------GFKYCRLDGQTAHEDRQRQINDFNM 122 (288)
Q Consensus 58 ~K~~~l~~ll~~~---~--~~~~kviIFs~~~~~----~~~l~~~l~~~------~~~~~~~~G~~~~~~R~~~i~~F~~ 122 (288)
+--+++...++.. . ....-+|||-.-.+. ++.|...|... ++.+..++..++.....+ -|+.
T Consensus 542 p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~k---iFq~ 618 (1042)
T KOG0924|consen 542 PVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAK---IFQK 618 (1042)
T ss_pred chHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhh---hccc
Confidence 3344555555542 1 223578899765543 44444444332 577888999998776654 4665
Q ss_pred CCCCeeEEEEecccccccccccccceeEEecC----CCCcch-----------hhhhhHHHHHHhhhcc
Q psy10684 123 EGSDIFIFMLSTRAGGLGINLATADVVVLYDS----DWNPQM-----------DLQAMVREAKILRRGS 176 (288)
Q Consensus 123 ~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~----~wnp~~-----------~~Qa~~R~~R~Gq~~~ 176 (288)
..++++-.+++|..+-..|++.+..+||-... -+||.. -.+|--|+||.|++++
T Consensus 619 a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~p 687 (1042)
T KOG0924|consen 619 AEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGP 687 (1042)
T ss_pred CCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCC
Confidence 66777777999999999999999999986542 234322 2344456666666654
No 252
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=87.24 E-value=0.59 Score=46.85 Aligned_cols=63 Identities=25% Similarity=0.358 Sum_probs=49.2
Q ss_pred cccCCCccccchh-----HHHhhcccC----CC-----CeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhh
Q psy10684 217 CRLDGQTAHEDRQ-----RQINDFNME----GS-----DIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 217 ~~l~G~~~~~~R~-----~~i~~f~~~----~~-----~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~R 282 (288)
..++|.+++.+|. +++++|. . .. .-..+|+++.+.+.|+++.. +++|....++ ....|.++|
T Consensus 298 ~lLHG~m~q~dR~~~~~~~il~~Fk-~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP~--esyIQRiGR 373 (844)
T TIGR02621 298 ELLTGTLRGAERDDLVKKEIFNRFL-PQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAPF--ESMQQRFGR 373 (844)
T ss_pred eEeeCCCCHHHHhhHHHHHHHHHHh-ccccccccccccccceEEeccchhhhcccCCc-ceEEECCCCH--HHHHHHhcc
Confidence 7889999999999 7788897 3 11 11356889999999999986 8888866553 466699998
Q ss_pred h
Q psy10684 283 T 283 (288)
Q Consensus 283 a 283 (288)
+
T Consensus 374 t 374 (844)
T TIGR02621 374 V 374 (844)
T ss_pred c
Confidence 6
No 253
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=87.19 E-value=0.53 Score=45.92 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=51.8
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcccc--------ceEEEeCCCCChhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATA--------DVVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a--------~~v~~~d~~wnp~~~~Qa~~R 282 (288)
..|+.+..++|+.. +|.+.+..|. ..+. . +++++..+|=|+++.-. .+||.+|.+=++-.+.|.++|
T Consensus 495 ~~gi~~~~Lhg~~~--~rE~~ii~~a-g~~g-~-VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GR 569 (656)
T PRK12898 495 EAGLPHQVLNAKQD--AEEAAIVARA-GQRG-R-ITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGR 569 (656)
T ss_pred HCCCCEEEeeCCcH--HHHHHHHHHc-CCCC-c-EEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhccc
Confidence 45888999999865 5555555555 2222 2 56788999999998733 299999999999999999999
Q ss_pred h
Q psy10684 283 T 283 (288)
Q Consensus 283 a 283 (288)
+
T Consensus 570 T 570 (656)
T PRK12898 570 C 570 (656)
T ss_pred c
Confidence 8
No 254
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=87.07 E-value=0.75 Score=45.90 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=55.0
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCc---cccc-----eEEEeCCCCChhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINL---ATAD-----VVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl---~~a~-----~v~~~d~~wnp~~~~Qa~~R 282 (288)
..|+.+..++|++...++.....+++ .. . +++++..+|=|+++ ...+ +||.+|++=|+-++.|.++|
T Consensus 450 ~~gi~~~~L~~~~~~~e~~~i~~ag~--~g--~-VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GR 524 (790)
T PRK09200 450 EAGIPHNLLNAKNAAKEAQIIAEAGQ--KG--A-VTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGR 524 (790)
T ss_pred HCCCCEEEecCCccHHHHHHHHHcCC--CC--e-EEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhcc
Confidence 45889999999988777766666655 22 3 55677999999998 4566 99999999999999999999
Q ss_pred h
Q psy10684 283 T 283 (288)
Q Consensus 283 a 283 (288)
+
T Consensus 525 t 525 (790)
T PRK09200 525 S 525 (790)
T ss_pred c
Confidence 8
No 255
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=86.71 E-value=3.8 Score=31.85 Aligned_cols=56 Identities=9% Similarity=0.224 Sum_probs=35.0
Q ss_pred EEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc--ccccccccc--cceeEEecCCCCc
Q psy10684 102 CRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA--GGLGINLAT--ADVVVLYDSDWNP 158 (288)
Q Consensus 102 ~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~--~~~Glnl~~--a~~vi~~d~~wnp 158 (288)
+.+.+.. ..+..++++.|+........+|+++.. .++|+|+++ +..||+...|+-+
T Consensus 23 i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 23 VFIEGKD-SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred EEEECCC-CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 3344433 235578899998422210123444444 799999994 7899999988743
No 256
>KOG0344|consensus
Probab=86.33 E-value=0.9 Score=43.01 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=52.6
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~R 282 (288)
++....++|+.++.+|++.+++|. ...+.|++++ ..-+=|+.+.++|.||.||-+=.-.-.-..|+|
T Consensus 412 ~i~v~vIh~e~~~~qrde~~~~FR--~g~IwvLicT-dll~RGiDf~gvn~VInyD~p~s~~syihrIGR 478 (593)
T KOG0344|consen 412 NINVDVIHGERSQKQRDETMERFR--IGKIWVLICT-DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGR 478 (593)
T ss_pred CcceeeEecccchhHHHHHHHHHh--ccCeeEEEeh-hhhhccccccCcceEEecCCCchhHHHHHHhhc
Confidence 566888999999999999999998 6777777765 666778999999999999987433333334444
No 257
>KOG0350|consensus
Probab=85.34 E-value=0.91 Score=42.36 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=53.6
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~R 282 (288)
.+.+..++|..+.+.|.+.+.+|. ..++.++++| .+.+=|+++..-+.||.|||+-.-...-+.++|
T Consensus 457 ~~~~s~~t~~l~~k~r~k~l~~f~--~g~i~vLIcS-D~laRGiDv~~v~~VINYd~P~~~ktyVHR~GR 523 (620)
T KOG0350|consen 457 NFKVSEFTGQLNGKRRYKMLEKFA--KGDINVLICS-DALARGIDVNDVDNVINYDPPASDKTYVHRAGR 523 (620)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHh--cCCceEEEeh-hhhhcCCcccccceEeecCCCchhhHHHHhhcc
Confidence 345556789999999999999998 7778888888 888899999999999999998444444444444
No 258
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=85.29 E-value=0.87 Score=45.88 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=45.8
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD 270 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~ 270 (288)
++....++|+++.++|++++..|. +...+ +++++..+..|+++...++||.++..
T Consensus 239 ~~~v~~Lhg~l~~~eq~~~~~~~~--~G~rk-VlvATnIAErsLtIp~V~~VID~Gl~ 293 (812)
T PRK11664 239 DVLLCPLYGALSLAEQQKAILPAP--AGRRK-VVLATNIAETSLTIEGIRLVVDSGLE 293 (812)
T ss_pred CceEEEeeCCCCHHHHHHHhcccc--CCCeE-EEEecchHHhcccccCceEEEECCCc
Confidence 567788999999999999998886 44445 56677889999999999999997755
No 259
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=84.69 E-value=0.61 Score=43.87 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=71.4
Q ss_pred chHHHHHHHhhhhccccchhhhhhccCCCc-cccc--ccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeeccc
Q psy10684 176 SIKKALEAKMSRYRAPFHQLRIAYGANKGK-NYTE--EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 252 (288)
Q Consensus 176 ~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~e--~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~ag 252 (288)
.|++.+.+...+.+. .+++++......+. ++++ .+.|++..+++.+...-+|.+++.+.+. .... .|+.+.--
T Consensus 431 QvdDL~~EI~~r~~~-~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~--G~~D-vLVGINLL 506 (663)
T COG0556 431 QVDDLLSEIRKRVAK-NERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL--GEFD-VLVGINLL 506 (663)
T ss_pred cHHHHHHHHHHHHhc-CCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc--CCcc-EEEeehhh
Confidence 344444443333333 35555544443332 3333 3679999999999999999999999983 3333 45567778
Q ss_pred ccCCCccccceEEEeCCCCChhhhh-----hhhhhh
Q psy10684 253 GLGINLATADVVVLYDSDWNPQMDL-----QAMVRT 283 (288)
Q Consensus 253 g~glnl~~a~~v~~~d~~wnp~~~~-----Qa~~Ra 283 (288)
..||++.-.+.|.++|-+-....-. |-|+||
T Consensus 507 REGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRA 542 (663)
T COG0556 507 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRA 542 (663)
T ss_pred hccCCCcceeEEEEeecCccccccccchHHHHHHHH
Confidence 8999999999999999995544433 999999
No 260
>KOG0926|consensus
Probab=84.13 E-value=0.63 Score=45.88 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=44.6
Q ss_pred HHHhhcCCCCCeeEEEEecccccccccccccceeEEec-----------------CCC-CcchhhhhhHHHHHHhh
Q psy10684 116 QINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD-----------------SDW-NPQMDLQAMVREAKILR 173 (288)
Q Consensus 116 ~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d-----------------~~w-np~~~~Qa~~R~~R~Gq 173 (288)
-++-|.....+.+..+++|.++-..|++++..+||-.. -.| +-+.-.||.||+||+|-
T Consensus 619 Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp 694 (1172)
T KOG0926|consen 619 QMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP 694 (1172)
T ss_pred hhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC
Confidence 34556666778888999999999999999999998643 233 34556788888888874
No 261
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=83.60 E-value=1.3 Score=43.88 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=54.9
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccc-------cceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT-------ADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~-------a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.|+.+..+.|+ ..+|...+..|. .. ... .++++.-+|=|+++.. ..+||.++++=++-++.|..+|+
T Consensus 427 ~~gi~~~~Lna~--q~~rEa~ii~~a-g~-~g~-VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRt 501 (745)
T TIGR00963 427 ERGIPHNVLNAK--NHEREAEIIAQA-GR-KGA-VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRS 501 (745)
T ss_pred HcCCCeEEeeCC--hHHHHHHHHHhc-CC-Cce-EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccc
Confidence 457888889998 668888888886 32 234 4556688888888777 67999999999999999999998
No 262
>KOG1513|consensus
Probab=82.58 E-value=0.56 Score=46.14 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=44.3
Q ss_pred HHhhcCCCCCeeEEEEeccccccccccccccee--------EEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 117 INDFNMEGSDIFIFMLSTRAGGLGINLATADVV--------VLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 117 i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~v--------i~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
..+|.+++. .| -+-+.+++-|+.|+.-.+| |-+++||+...-.|-.||+||-.|-..
T Consensus 850 KqrFM~GeK--~v-AIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsa 914 (1300)
T KOG1513|consen 850 KQRFMDGEK--LV-AIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSA 914 (1300)
T ss_pred Hhhhccccc--ee-eeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCC
Confidence 457873332 33 4556899999999976666 457999999999999999999998764
No 263
>KOG0334|consensus
Probab=82.14 E-value=35 Score=34.95 Aligned_cols=57 Identities=25% Similarity=0.378 Sum_probs=47.6
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD 270 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~ 270 (288)
+.|+..+.++|+.++.+|...+.+|. +..+. +|+-+....-||+..-=..||.||.+
T Consensus 635 ~ag~~~~slHGgv~q~dR~sti~dfK--~~~~~-LLvaTsvvarGLdv~~l~Lvvnyd~p 691 (997)
T KOG0334|consen 635 KAGYNCDSLHGGVDQHDRSSTIEDFK--NGVVN-LLVATSVVARGLDVKELILVVNYDFP 691 (997)
T ss_pred hcCcchhhhcCCCchHHHHhHHHHHh--ccCce-EEEehhhhhcccccccceEEEEcccc
Confidence 34888889999999999999999998 44344 55556778899999999999999987
No 264
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=81.81 E-value=16 Score=26.15 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=36.7
Q ss_pred CCeEEEEec------chHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 74 ESRVLIFSQ------MTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 74 ~~kviIFs~------~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.++|+||+. +...+..+.+.|...|+++..++=....+.|..+.....
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg 64 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSN 64 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhC
Confidence 479999974 567788999999999999988876555666666555443
No 265
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=81.80 E-value=4.1 Score=34.74 Aligned_cols=80 Identities=10% Similarity=0.057 Sum_probs=57.6
Q ss_pred EEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc-CCCCCeeEEEEecccccccccccccceeEEecCCC
Q psy10684 78 LIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN-MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW 156 (288)
Q Consensus 78 iIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~-~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~w 156 (288)
...-.|.+..+.|...+.. ++..+.++++.+... -.|. ....+..++++--...+||++|.+-...++.-.+-
T Consensus 91 ~~~~s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~ 164 (239)
T PF10593_consen 91 PDPPSWEEIKPELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSK 164 (239)
T ss_pred CCCcCHHHHHHHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCc
Confidence 3445567777888888876 899999997765443 3333 12222477899999999999999988888877766
Q ss_pred Ccchhhh
Q psy10684 157 NPQMDLQ 163 (288)
Q Consensus 157 np~~~~Q 163 (288)
+..+..|
T Consensus 165 ~~DTL~Q 171 (239)
T PF10593_consen 165 QYDTLMQ 171 (239)
T ss_pred hHHHHHH
Confidence 6666666
No 266
>KOG0342|consensus
Probab=81.20 E-value=2.3 Score=39.61 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=58.5
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
...+...-++|..++..|.....+|. .+. --| |+.+..++=|++...-+-|+=|||+=||...-+.++|.
T Consensus 352 ~~dlpv~eiHgk~~Q~kRT~~~~~F~-kae-sgI-L~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRT 421 (543)
T KOG0342|consen 352 YIDLPVLEIHGKQKQNKRTSTFFEFC-KAE-SGI-LVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRT 421 (543)
T ss_pred hcCCchhhhhcCCcccccchHHHHHh-hcc-cce-EEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccc
Confidence 34567788999999999999999998 333 234 44558888999999999999999999999998888885
No 267
>COG4889 Predicted helicase [General function prediction only]
Probab=81.16 E-value=4 Score=41.06 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=51.6
Q ss_pred hhhcccCCCccccchhHHHhhccc-CCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhh-hhhhhh
Q psy10684 214 YLYCRLDGQTAHEDRQRQINDFNM-EGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDL-QAMVRT 283 (288)
Q Consensus 214 i~~~~l~G~~~~~~R~~~i~~f~~-~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~-Qa~~Ra 283 (288)
+...-+||.|+.-+|.+...--+. +..+++| |--.++-..|.+..+=+.||++||- |..++- ||++|.
T Consensus 500 iSi~HvDGtmNal~R~~l~~l~~~~~~neckI-lSNaRcLSEGVDVPaLDsViFf~pr-~smVDIVQaVGRV 569 (1518)
T COG4889 500 ISIDHVDGTMNALERLDLLELKNTFEPNECKI-LSNARCLSEGVDVPALDSVIFFDPR-SSMVDIVQAVGRV 569 (1518)
T ss_pred EEeecccccccHHHHHHHHhccCCCCcchhee-eccchhhhcCCCccccceEEEecCc-hhHHHHHHHHHHH
Confidence 344557999999999666655532 3444554 4466899999999999999999998 665554 999996
No 268
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=78.14 E-value=16 Score=25.66 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=34.3
Q ss_pred CCeEEEEec------chHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHH
Q psy10684 74 ESRVLIFSQ------MTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQIN 118 (288)
Q Consensus 74 ~~kviIFs~------~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~ 118 (288)
+.+|+||+. +...+..+.+.|...++++..++=....+.|..+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~ 57 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE 57 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH
Confidence 469999986 677889999999999999988885555444444443
No 269
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=78.02 E-value=2 Score=42.68 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=53.3
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcc---------ccceEEEeCCCCChhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA---------TADVVVLYDSDWNPQMDLQAMV 281 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~---------~a~~v~~~d~~wnp~~~~Qa~~ 281 (288)
..|+.+..+.|++...+|.....+++ .. . +++++..+|=|+++. +-+.|+.++++ +...+.|..+
T Consensus 446 ~~gi~~~~L~a~~~~~E~~ii~~ag~--~g--~-VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~p-s~rid~qr~G 519 (762)
T TIGR03714 446 REGIPHNLLNAQNAAKEAQIIAEAGQ--KG--A-VTVATSMAGRGTDIKLGKGVAELGGLAVIGTERME-NSRVDLQLRG 519 (762)
T ss_pred HCCCCEEEecCCChHHHHHHHHHcCC--CC--e-EEEEccccccccCCCCCccccccCCeEEEEecCCC-CcHHHHHhhh
Confidence 45889999999999877766666555 22 3 457888999999998 77899999999 5567799999
Q ss_pred hh
Q psy10684 282 RT 283 (288)
Q Consensus 282 Ra 283 (288)
|+
T Consensus 520 Rt 521 (762)
T TIGR03714 520 RS 521 (762)
T ss_pred cc
Confidence 98
No 270
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=77.28 E-value=21 Score=27.67 Aligned_cols=42 Identities=19% Similarity=0.092 Sum_probs=38.2
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR 97 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~ 97 (288)
.+.+...+.+++.+....|.+++|.|.....++.|-+.|...
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~ 52 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTF 52 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 466889999999999999999999999999999999999875
No 271
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=76.97 E-value=16 Score=28.18 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc
Q psy10684 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR 97 (288)
Q Consensus 60 ~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~ 97 (288)
...+.+++++....|.+++|+|.....++.|-+.|...
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~ 52 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTF 52 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCC
Confidence 48888999999999999999999999999999999876
No 272
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=76.55 E-value=19 Score=23.82 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=39.9
Q ss_pred eEEEEe-cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 76 RVLIFS-QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 76 kviIFs-~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
|+.||+ .+...+......|+..++++..++-....+.+++..+... ....+.++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~-~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSG-GRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC-CCCccCEEEEC
Confidence 456665 5556688899999999999999988877677777666665 22244454444
No 273
>KOG0343|consensus
Probab=76.48 E-value=3.2 Score=39.44 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=58.0
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|+...-++|.+++..|-.+.++|. ... .+.|..+..++-||+..+-|-||=+|.+=+-...-+.++|.
T Consensus 338 pg~~l~~L~G~~~Q~~R~ev~~~F~-~~~--~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRt 406 (758)
T KOG0343|consen 338 PGIPLLALHGTMSQKKRIEVYKKFV-RKR--AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRT 406 (758)
T ss_pred CCCceeeeccchhHHHHHHHHHHHH-Hhc--ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhh
Confidence 3777788999999999999999998 322 36677889999999999999999999987777666777775
No 274
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=76.45 E-value=3 Score=42.74 Aligned_cols=68 Identities=16% Similarity=0.072 Sum_probs=53.0
Q ss_pred EeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEec---------CCCCcchhhhhhHHHHHHhh
Q psy10684 103 RLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD---------SDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 103 ~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d---------~~wnp~~~~Qa~~R~~R~Gq 173 (288)
.-|+++=+.-|..+=..|+ .+-++| ++.|.+-+.|+|++ |.+|++.. .+-+|+.|.|.-||++|-|+
T Consensus 449 vHH~GlLP~~K~~vE~Lfq--~GLvkv-vFaTeT~s~GiNmP-artvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGl 524 (1041)
T COG4581 449 VHHAGLLPAIKELVEELFQ--EGLVKV-VFATETFAIGINMP-ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGL 524 (1041)
T ss_pred hhccccchHHHHHHHHHHh--ccceeE-EeehhhhhhhcCCc-ccceeeeeeEEecCCceeecChhHHHHhhhhhccccc
Confidence 5577777777877878887 344555 88999999999988 45555553 35679999999999999997
Q ss_pred h
Q psy10684 174 R 174 (288)
Q Consensus 174 ~ 174 (288)
.
T Consensus 525 D 525 (1041)
T COG4581 525 D 525 (1041)
T ss_pred c
Confidence 6
No 275
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=75.95 E-value=36 Score=27.20 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEE-eeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCR-LDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 60 ~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~-~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
.+.+.++++....++.++-++-...+.++.+.+.|+.. ++..+- .+|-...++...+++.-+.. +..++++.
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~--~pdiv~vg 106 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS--GADILFVG 106 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEE
Confidence 44677788777777889999999999999998888776 787776 68888888887788888743 34445554
No 276
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=75.85 E-value=2.5 Score=42.21 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=52.6
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcc---ccc-----eEEEeCCCCChhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA---TAD-----VVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~---~a~-----~v~~~d~~wnp~~~~Qa~~R 282 (288)
+.|+.+..++|+....++..+..+++ +. . .++++.-+|=|.+.. ... +||.++.+=++-++.|.++|
T Consensus 462 ~~gi~~~~Lna~~~~~Ea~ii~~ag~---~g-~-VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GR 536 (796)
T PRK12906 462 EAGIPHAVLNAKNHAKEAEIIMNAGQ---RG-A-VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGR 536 (796)
T ss_pred HCCCCeeEecCCcHHHHHHHHHhcCC---Cc-e-EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhh
Confidence 45788999999988555555555554 22 2 566778888898884 456 99999999999999999999
Q ss_pred h
Q psy10684 283 T 283 (288)
Q Consensus 283 a 283 (288)
|
T Consensus 537 t 537 (796)
T PRK12906 537 S 537 (796)
T ss_pred h
Confidence 8
No 277
>PHA02653 RNA helicase NPH-II; Provisional
Probab=75.34 E-value=4.1 Score=40.24 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=48.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC------------Chhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW------------NPQMDLQAM 280 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w------------np~~~~Qa~ 280 (288)
++....++|+++.. ++.+++|. .+...+ +|+++..+..|+++...++||.++... +.+.-.|..
T Consensus 421 ~~~v~~LHG~Lsq~--eq~l~~ff-~~gk~k-ILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRa 496 (675)
T PHA02653 421 IYDFYIIHGKVPNI--DEILEKVY-SSKNPS-IIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRK 496 (675)
T ss_pred CceEEeccCCcCHH--HHHHHHHh-ccCcee-EEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhc
Confidence 46788899999863 56777874 345555 556778899999999999999997332 333445777
Q ss_pred hhh
Q psy10684 281 VRT 283 (288)
Q Consensus 281 ~Ra 283 (288)
+||
T Consensus 497 GRA 499 (675)
T PHA02653 497 GRV 499 (675)
T ss_pred cCc
Confidence 776
No 278
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=75.13 E-value=60 Score=33.23 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=53.3
Q ss_pred hhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC-Chhhhhhhhhhh
Q psy10684 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVRT 283 (288)
Q Consensus 214 i~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w-np~~~~Qa~~Ra 283 (288)
.......|.+..++|.++..+|. ..+. ..++|+.|--+|+.+-..+.||...-+= .-.--.|-.+||
T Consensus 339 ~~v~~~~~~~~~~er~~ie~~~~--~g~~-~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRa 406 (851)
T COG1205 339 DAVSTYRAGLHREERRRIEAEFK--EGEL-LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRA 406 (851)
T ss_pred hheeeccccCCHHHHHHHHHHHh--cCCc-cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhc
Confidence 45777899999999999999998 3333 3577889999999999999999988664 224445888887
No 279
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=74.18 E-value=12 Score=38.65 Aligned_cols=97 Identities=10% Similarity=0.081 Sum_probs=60.7
Q ss_pred EEEEecchHHHHHHHHHHhh---c--CcEEEEeeCCCCHHHHHHHHHh---------------------hc--CCCCCee
Q psy10684 77 VLIFSQMTRMLDILEDYCYW---R--GFKYCRLDGQTAHEDRQRQIND---------------------FN--MEGSDIF 128 (288)
Q Consensus 77 viIFs~~~~~~~~l~~~l~~---~--~~~~~~~~G~~~~~~R~~~i~~---------------------F~--~~~~~~~ 128 (288)
+|.+++-...++.-...+.. . .+.++.||+..+...|...=++ +- .+..+..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 47777766665544444322 2 4679999999977766542211 11 1122456
Q ss_pred EEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 129 IFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 129 vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+++++|.+.-.|+|+. .+.+|- |+. .-....|+.||+.|-|+...
T Consensus 840 ~i~v~Tqv~E~g~D~d-fd~~~~-~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 840 FIVLATPVEEVGRDHD-YDWAIA-DPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred eEEEEeeeEEEEeccc-CCeeee-ccC-cHHHHHHHhhcccccccCCC
Confidence 7799999999999965 333332 321 23456899999999987543
No 280
>PRK09694 helicase Cas3; Provisional
Probab=73.04 E-value=23 Score=36.22 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=44.6
Q ss_pred hhcccCCCccccch----hHHHhhcccCCCCe--eEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDR----QRQINDFNMEGSDI--FIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R----~~~i~~f~~~~~~~--~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
....+++.++..+| +++++.|. .+... ..+|+++..-..|+++. .+.+|....+ ...-.|.++|+
T Consensus 589 ~v~llHsrf~~~dR~~~E~~vl~~fg-k~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP--idsLiQRaGR~ 659 (878)
T PRK09694 589 DIDLFHARFTLNDRREKEQRVIENFG-KNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP--VDLLFQRLGRL 659 (878)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHH-hcCCcCCCeEEEECcchhheeecC-CCeEEECCCC--HHHHHHHHhcc
Confidence 45678999999888 46788884 22221 34678999999999995 5776664333 23344888876
No 281
>KOG2340|consensus
Probab=72.47 E-value=11 Score=35.71 Aligned_cols=117 Identities=15% Similarity=0.207 Sum_probs=80.6
Q ss_pred CchHHHHHH-HHHHHHhC-CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 57 SGKMVVLDK-LLPKLKAQ-ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 57 s~K~~~l~~-ll~~~~~~-~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..+..++.. ++..+... ...++|+-.+--..-.+..++++..+.++.++--.+.++-.++-+-|. .+...+||.+-
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~--qgr~~vlLyTE 610 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFF--QGRKSVLLYTE 610 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHH--hcCceEEEEeh
Confidence 345555443 33333333 356788877666666788899999999999988777777777888887 35556777665
Q ss_pred cc-ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 135 RA-GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 135 ~~-~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
.+ --+--.+.++..||+|.||-||.-|.--+.=..|.-+.+
T Consensus 611 R~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 611 RAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQG 652 (698)
T ss_pred hhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccC
Confidence 44 234556788999999999999998876554444444444
No 282
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=71.10 E-value=13 Score=29.39 Aligned_cols=44 Identities=9% Similarity=0.051 Sum_probs=40.0
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR 97 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~ 97 (288)
+..+++..++-+|+++....|.|++|.+...+.+..|-+.|...
T Consensus 9 L~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf 52 (154)
T PRK06646 9 TSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTY 52 (154)
T ss_pred eCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 35688999999999999999999999999999999999999865
No 283
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=69.46 E-value=59 Score=26.28 Aligned_cols=72 Identities=13% Similarity=0.161 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 60 ~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
.+.+..+++....++.++-++-.....++.+.+.|+.. ++..+-.+|-.+.++.+.+++.-+. .+..++++.
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~--s~~dil~Vg 107 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIAR--SGAGIVFVG 107 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHH--cCCCEEEEE
Confidence 45777788776667788989999999999999999776 7777777899988777777777773 334455554
No 284
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=68.29 E-value=25 Score=30.13 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=45.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT 108 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~ 108 (288)
.-.|-..|..+|..+....+++|......+.+..++..|...||.+.-+|-.-
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~ 212 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTG 212 (252)
T ss_pred CCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcc
Confidence 56788999999998777778888889999999999999999999988887543
No 285
>PRK10824 glutaredoxin-4; Provisional
Probab=68.04 E-value=44 Score=24.95 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=36.6
Q ss_pred HHHHHHHhCCCeEEEEec------chHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 65 KLLPKLKAQESRVLIFSQ------MTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 65 ~ll~~~~~~~~kviIFs~------~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
+.++.+.. .++|+||+. +...+......|...++++..++=....+.|. .+.++.
T Consensus 6 ~~v~~~I~-~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~s 66 (115)
T PRK10824 6 EKIQRQIA-ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYA 66 (115)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHh
Confidence 33444333 379999997 57789999999999988776665444444444 455554
No 286
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=68.04 E-value=61 Score=25.90 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEE-EeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYC-RLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 60 ~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~-~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
.+.+..++.....++.++-++-.....++.+...|+.. ++..+ ..+|-.+.++..++++.-+. .+..++++.
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~--~~pdiv~vg 108 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA--SGPDIVFVG 108 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEE
Confidence 45677777777777889999999999999999999887 77766 45677777888899999884 344455554
No 287
>KOG0925|consensus
Probab=67.83 E-value=48 Score=31.42 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhc---------CcEEEEeeCCCCHHHHHHHHHhhcC---CCC
Q psy10684 60 MVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWR---------GFKYCRLDGQTAHEDRQRQINDFNM---EGS 125 (288)
Q Consensus 60 ~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~---------~~~~~~~~G~~~~~~R~~~i~~F~~---~~~ 125 (288)
+++.+..+-++. ++..-+++|-...+.++...+.+... .+.++.++ +.+.+++.+--.. +..
T Consensus 237 lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~ 312 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAY 312 (699)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCc
Confidence 344444444433 33456999988887766665555422 24566666 2333332221110 111
Q ss_pred CeeEEEEecccccccccccccceeEEecC----CCCc-----------chhhhhhHHHHHHhhhcch
Q psy10684 126 DIFIFMLSTRAGGLGINLATADVVVLYDS----DWNP-----------QMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 126 ~~~vll~s~~~~~~Glnl~~a~~vi~~d~----~wnp-----------~~~~Qa~~R~~R~Gq~~~v 177 (288)
+-+ ++++|..+-..+.+.+.-+||--.. -+|| -.-.||..|.+|.|++++-
T Consensus 313 ~Rk-vVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pG 378 (699)
T KOG0925|consen 313 GRK-VVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPG 378 (699)
T ss_pred cce-EEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCC
Confidence 223 4899999999999888777764322 2444 3445888999999998763
No 288
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=67.05 E-value=9.6 Score=26.57 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=31.0
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~ 109 (288)
..+.++|+||+...........|+..|+++..++|+++
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 44678999998866677778889889998888999874
No 289
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=66.21 E-value=14 Score=27.82 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=28.9
Q ss_pred hCCCeEEEEec-chHHHHHHHHHHhhcCcEEEEeeCCCC
Q psy10684 72 AQESRVLIFSQ-MTRMLDILEDYCYWRGFKYCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~-~~~~~~~l~~~l~~~~~~~~~~~G~~~ 109 (288)
..+.++||||+ ...........|+..|+++..++|+++
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 45679999997 344455666788888999888999874
No 290
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=64.55 E-value=52 Score=23.88 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=43.7
Q ss_pred cCchHHHHHHHHHHHHh--CCCeEEEEecchHHHHHHHHHHhhcC---cEEEEeeCCCCHHHHH
Q psy10684 56 NSGKMVVLDKLLPKLKA--QESRVLIFSQMTRMLDILEDYCYWRG---FKYCRLDGQTAHEDRQ 114 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~--~~~kviIFs~~~~~~~~l~~~l~~~~---~~~~~~~G~~~~~~R~ 114 (288)
.++|...+...+..... ...+++|.+............+.... ..+..+++.....+..
T Consensus 10 G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 10 GSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 58899888888777554 45799999999988888777666543 7788888876554443
No 291
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=64.52 E-value=8.2 Score=38.80 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=54.6
Q ss_pred cccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 217 CRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 217 ~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
..=+|+.+.+.|..+-++|. +.+.++.+ ++..--.|++.=..+.||.+.++-.=+--.|.++||
T Consensus 282 ~~HHgSlSre~R~~vE~~lk--~G~lravV-~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRs 345 (814)
T COG1201 282 EVHHGSLSRELRLEVEERLK--EGELKAVV-ATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRA 345 (814)
T ss_pred eeecccccHHHHHHHHHHHh--cCCceEEE-EccchhhccccCCceEEEEeCCcHHHHHHhHhcccc
Confidence 33488999999999999998 55567555 558889999999999999999998888888999998
No 292
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=63.58 E-value=77 Score=25.51 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=40.7
Q ss_pred cCchHHH-HHHHHHHHHhC----CCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHH
Q psy10684 56 NSGKMVV-LDKLLPKLKAQ----ESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQR 115 (288)
Q Consensus 56 ~s~K~~~-l~~ll~~~~~~----~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~ 115 (288)
.++|... +..++..+... +.++||.+.....+......+.. .++....++|+.+..++..
T Consensus 46 G~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (203)
T cd00268 46 GSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIR 114 (203)
T ss_pred CCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH
Confidence 5788644 55566655443 46899999988877665544433 4788889999987765543
No 293
>PF12622 NpwBP: mRNA biogenesis factor
Probab=63.51 E-value=3.6 Score=25.53 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=10.8
Q ss_pred eEEEeCCCCChhh
Q psy10684 263 VVVLYDSDWNPQM 275 (288)
Q Consensus 263 ~v~~~d~~wnp~~ 275 (288)
+-|.|||.|||..
T Consensus 3 kSiyydP~~NP~G 15 (48)
T PF12622_consen 3 KSIYYDPELNPLG 15 (48)
T ss_pred cceecCCccCCCC
Confidence 4589999999964
No 294
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=63.04 E-value=13 Score=26.43 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=31.6
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~ 109 (288)
..+.+++++|............|...|+....+.|++.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 35678999999877778888899999999888888874
No 295
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=62.45 E-value=55 Score=25.58 Aligned_cols=46 Identities=11% Similarity=0.011 Sum_probs=38.1
Q ss_pred eEEEEecc-------hHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 76 RVLIFSQM-------TRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 76 kviIFs~~-------~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
+|+||+.+ -..+..+...|+..++++..++=++..+.++++.+...
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLG 53 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 57888876 56788999999999999999998888888888766554
No 296
>KOG0349|consensus
Probab=60.35 E-value=14 Score=34.26 Aligned_cols=68 Identities=15% Similarity=0.293 Sum_probs=55.4
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.+..+-+.|+..+.+|.+.++.|. ..+++ ||+-+..+.-||++++--.+|.+-.+=...+.-..|+|.
T Consensus 532 ~~scvclhgDrkP~Erk~nle~Fk--k~dvk-flictdvaargldi~g~p~~invtlpd~k~nyvhrigrv 599 (725)
T KOG0349|consen 532 HYSCVCLHGDRKPDERKANLESFK--KFDVK-FLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRV 599 (725)
T ss_pred cceeEEEecCCChhHHHHHHHhhh--hcCeE-EEEEehhhhccccccCCceEEEEecCcccchhhhhhhcc
Confidence 466777899999999999999998 55666 455558888999999999999998886777777777664
No 297
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=60.27 E-value=23 Score=31.97 Aligned_cols=60 Identities=20% Similarity=0.026 Sum_probs=51.8
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHH
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDR 113 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R 113 (288)
+..++|.+.+-.-++....+|..|.|-|.-.+.+-.|...|+.. ++....+||..++.-|
T Consensus 124 V~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~fr 185 (441)
T COG4098 124 VTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYFR 185 (441)
T ss_pred ecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhcc
Confidence 44899999999999999999999999999999999888888765 6788899998875544
No 298
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=59.67 E-value=8.6 Score=34.80 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=42.5
Q ss_pred hhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 214 i~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.+..++|.++.++|.+.. . ..+|+++...+.|+++.. +.|| ++|. ++...-|.++|+
T Consensus 299 ~~~~~l~g~~~~~~R~~~~--------~-~~iLVaTdv~~rGiDi~~-~~vi-~~p~-~~~~yiqR~GR~ 356 (357)
T TIGR03158 299 DDIGRITGFAPKKDRERAM--------Q-FDILLGTSTVDVGVDFKR-DWLI-FSAR-DAAAFWQRLGRL 356 (357)
T ss_pred ceEEeeecCCCHHHHHHhc--------c-CCEEEEecHHhcccCCCC-ceEE-ECCC-CHHHHhhhcccC
Confidence 4566789999988886543 1 236778899999999975 4666 5653 667777999996
No 299
>PF13245 AAA_19: Part of AAA domain
Probab=59.30 E-value=33 Score=23.33 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=33.6
Q ss_pred cCchHHHHHHHHHHHHhC----CCeEEEEecchHHHHHHHHHH
Q psy10684 56 NSGKMVVLDKLLPKLKAQ----ESRVLIFSQMTRMLDILEDYC 94 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~----~~kviIFs~~~~~~~~l~~~l 94 (288)
.|+|...+...+..+... ++++++.+......+.|.+.+
T Consensus 20 GtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 20 GTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 489999999888887754 789999999999999998888
No 300
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=59.24 E-value=89 Score=28.83 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=17.8
Q ss_pred ceeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 147 DVVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 147 ~~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
..+|++|.|-||-...+=+.++-|+-
T Consensus 150 tk~v~lEtPsNP~l~v~DI~~i~~~A 175 (396)
T COG0626 150 TKLVFLETPSNPLLEVPDIPAIARLA 175 (396)
T ss_pred ceEEEEeCCCCcccccccHHHHHHHH
Confidence 46778888888877776555555553
No 301
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=59.06 E-value=20 Score=25.20 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=28.6
Q ss_pred CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT 108 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~ 108 (288)
+.+++++|............|...|+++..+.|++
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~ 90 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGL 90 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcH
Confidence 56899999987666677788888999966688887
No 302
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=56.43 E-value=37 Score=24.06 Aligned_cols=37 Identities=11% Similarity=0.270 Sum_probs=29.4
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
.+.+++++|+...........|...|+. +..++|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 4678999999877777778888888885 667888874
No 303
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=56.06 E-value=18 Score=24.92 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=31.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
..+.++||+|........+...|...|++ +..+.|++.
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 44678999998877788888999999987 778888873
No 304
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=54.28 E-value=76 Score=24.72 Aligned_cols=38 Identities=18% Similarity=0.086 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC
Q psy10684 61 VVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG 98 (288)
Q Consensus 61 ~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~ 98 (288)
.++..++++....|.||+|-|......+.|-+.|....
T Consensus 16 ~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~ 53 (144)
T COG2927 16 AAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFS 53 (144)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccc
Confidence 38889999989999999999999999999999997653
No 305
>PTZ00062 glutaredoxin; Provisional
Probab=53.97 E-value=1.3e+02 Score=24.99 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCeEEEEec------chHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 63 LDKLLPKLKAQESRVLIFSQ------MTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 63 l~~ll~~~~~~~~kviIFs~------~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
+.+.++++.. ..+|+||+. +...+..+...|+..++++..++=....+.|+.+ ..+. +.+.+..+.+.
T Consensus 102 ~~~~v~~li~-~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l-~~~s-g~~TvPqVfI~ 175 (204)
T PTZ00062 102 TVEKIERLIR-NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREEL-KVYS-NWPTYPQLYVN 175 (204)
T ss_pred HHHHHHHHHh-cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHH-HHHh-CCCCCCeEEEC
Confidence 4455555443 479999988 5677889999999999999988877666666654 4454 33444333444
No 306
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=51.31 E-value=23 Score=25.19 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=29.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
..+.++||+|+...........|...|++ +..+.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 45678999998876666777888888985 667888763
No 307
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=51.14 E-value=1.2e+02 Score=31.68 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=51.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh----cC-cEEEE-eeCCCCHHHHHHHHHhhcCCCCCeeE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW----RG-FKYCR-LDGQTAHEDRQRQINDFNMEGSDIFI 129 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~----~~-~~~~~-~~G~~~~~~R~~~i~~F~~~~~~~~v 129 (288)
..+|....+-+-.-+...+.++.+-...+..+....+.|.. .+ ..... +||.++.+++++++++|. +++..|
T Consensus 107 GvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~--~gdfdI 184 (1187)
T COG1110 107 GVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIE--SGDFDI 184 (1187)
T ss_pred CCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHh--cCCccE
Confidence 46777765544444455677887777777665555554443 33 33222 899999999999999997 455566
Q ss_pred EEEecc
Q psy10684 130 FMLSTR 135 (288)
Q Consensus 130 ll~s~~ 135 (288)
++.++.
T Consensus 185 litTs~ 190 (1187)
T COG1110 185 LITTSQ 190 (1187)
T ss_pred EEEeHH
Confidence 555544
No 308
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=50.78 E-value=49 Score=23.83 Aligned_cols=47 Identities=13% Similarity=0.003 Sum_probs=32.7
Q ss_pred HHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhhcCcE--EEEeeCCCC
Q psy10684 63 LDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYWRGFK--YCRLDGQTA 109 (288)
Q Consensus 63 l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~~~~~--~~~~~G~~~ 109 (288)
+...+..+. ..+..++|||+...........|...|++ +..+.|+++
T Consensus 54 l~~~~~~l~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 54 LVLRVGELAPDPRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 333444432 23568999998876666677888889984 677889874
No 309
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=50.52 E-value=51 Score=32.50 Aligned_cols=52 Identities=25% Similarity=0.230 Sum_probs=46.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCC
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQ 107 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~ 107 (288)
.++|...+.+++..+...+.+|++.+.+...++.|.+.|...+++++++...
T Consensus 183 GTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~ 234 (637)
T TIGR00376 183 GTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHP 234 (637)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCc
Confidence 6789999999999888888999999999999999999998888888887644
No 310
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=49.38 E-value=34 Score=23.96 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=28.7
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCc-EEEEeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGF-KYCRLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~-~~~~~~G~~ 108 (288)
..+.++|++|............|...|+ ++..++|++
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 91 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGT 91 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCH
Confidence 4567899999887777777778888888 466778876
No 311
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=49.10 E-value=33 Score=24.86 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=29.6
Q ss_pred hCCCeEEEEecchH--HHHHHHHHHhhcCcEEEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTR--MLDILEDYCYWRGFKYCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~--~~~~l~~~l~~~~~~~~~~~G~~~ 109 (288)
..+.++|++|+... ........|...|+++..++|++.
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 45678999998653 566777888888998888898873
No 312
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=49.00 E-value=1.2e+02 Score=25.40 Aligned_cols=66 Identities=17% Similarity=0.001 Sum_probs=51.7
Q ss_pred cCchHHHHHHHHHHHHhCC---CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQE---SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~---~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|...+..++....+.+ .+.||-+..-...-.+...++..|+++..+........+.+.+..|.
T Consensus 28 gS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~G 96 (244)
T cd00640 28 GSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALG 96 (244)
T ss_pred CCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCC
Confidence 6889999888888777666 45666666678888888899989999988877766677777777774
No 313
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=48.34 E-value=1.4e+02 Score=24.00 Aligned_cols=55 Identities=25% Similarity=0.230 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCC--CeEEEEecc--------hHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 63 LDKLLPKLKAQE--SRVLIFSQM--------TRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 63 l~~ll~~~~~~~--~kviIFs~~--------~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
+.+.++++.+.. ++++|+|+. ...+..+++.| |+++.+.. ..++....++++.|.
T Consensus 64 ~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l---gIpvl~h~-~kKP~~~~~i~~~~~ 128 (168)
T PF09419_consen 64 YAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL---GIPVLRHR-AKKPGCFREILKYFK 128 (168)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh---CCcEEEeC-CCCCccHHHHHHHHh
Confidence 444455555443 489999997 34455666555 67755544 444467778889886
No 314
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=47.53 E-value=1.3e+02 Score=26.31 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=54.9
Q ss_pred ccCchHHHHHHHHHHHHhCCC----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQES----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|.+....++....+.+. +.||-+..-.....++...+..|+++..+-.......+.+.++.|.
T Consensus 35 tGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~G 105 (290)
T TIGR01138 35 AGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYG 105 (290)
T ss_pred CccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcC
Confidence 368899988888887666654 5677788888999999999999999999988776677888888885
No 315
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=47.45 E-value=1.5e+02 Score=23.87 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE---ecccc
Q psy10684 61 VVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML---STRAG 137 (288)
Q Consensus 61 ~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~---s~~~~ 137 (288)
..+.+.+.++.+.+-+++|+|+..+ ..+......-|+++..--+.-....-.+++.+++- +++-.+++- -|++
T Consensus 49 pe~~~W~~e~k~~gi~v~vvSNn~e--~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l-~~~~vvmVGDqL~TDV- 124 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVSNNKE--SRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNL-PPEEVVMVGDQLFTDV- 124 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCH--HHHHhhhhhcCCceeecccCccHHHHHHHHHHcCC-ChhHEEEEcchhhhhh-
Confidence 3567777778888999999999655 56777777789998877777777777788999983 333333221 1333
Q ss_pred cccccccccceeEEecCCCCcchh
Q psy10684 138 GLGINLATADVVVLYDSDWNPQMD 161 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~wnp~~~ 161 (288)
.|-|..+. +.|++.|--.|...
T Consensus 125 -lggnr~G~-~tIlV~Pl~~~d~~ 146 (175)
T COG2179 125 -LGGNRAGM-RTILVEPLVAPDGW 146 (175)
T ss_pred -hcccccCc-EEEEEEEeccccch
Confidence 23333333 45666665555433
No 316
>PRK06381 threonine synthase; Validated
Probab=46.87 E-value=1.3e+02 Score=26.65 Aligned_cols=67 Identities=6% Similarity=0.053 Sum_probs=54.6
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|.+.+..++....+.+.+.||-+.+-...-.++......|+++..+-.......+.+.++.|-
T Consensus 43 tGS~K~R~a~~~l~~a~~~g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~G 109 (319)
T PRK06381 43 TGTQKDRIAEAHVRRAMRLGYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYG 109 (319)
T ss_pred ccCcHHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcC
Confidence 4688999999998888888878887777888888999999999999888877666667777777774
No 317
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=46.77 E-value=50 Score=24.01 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=33.3
Q ss_pred HHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCC
Q psy10684 62 VLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQT 108 (288)
Q Consensus 62 ~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~ 108 (288)
.+...+..+. ..+.++|++|............|...|++ +..++|++
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 3444444432 34678999999876777788889888985 67778876
No 318
>KOG0780|consensus
Probab=46.22 E-value=2.5e+02 Score=26.08 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=52.7
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchH---HHHHHHHHHhhcCcEEEE-eeCCCCHHHHHHHHHhhcCCCCCeeE
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTR---MLDILEDYCYWRGFKYCR-LDGQTAHEDRQRQINDFNMEGSDIFI 129 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~---~~~~l~~~l~~~~~~~~~-~~G~~~~~~R~~~i~~F~~~~~~~~v 129 (288)
+..|+|....-++...+..++.|+.+-|.-+- ..|.|...-.+.++++.. ++..-+..--.+-+++|+ ..++.+
T Consensus 109 LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK--ke~fdv 186 (483)
T KOG0780|consen 109 LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK--KENFDV 186 (483)
T ss_pred ccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH--hcCCcE
Confidence 34788988888888888888999888775442 366777666666777543 344445556677888887 344455
Q ss_pred EEEec
Q psy10684 130 FMLST 134 (288)
Q Consensus 130 ll~s~ 134 (288)
+++.|
T Consensus 187 IIvDT 191 (483)
T KOG0780|consen 187 IIVDT 191 (483)
T ss_pred EEEeC
Confidence 55443
No 319
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=46.14 E-value=1.2e+02 Score=22.37 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCC-CCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQ-TAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~-~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
|...+.++...+...+..++.-.++.+.+..+.. ...+.++.++-. .......++++..+..+.++.|||+.....
T Consensus 2 k~a~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~---~~~i~avvi~~d~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~ 78 (115)
T PF03709_consen 2 KIAASRELAEALEQRGREVVDADSTDDALAIIES---FTDIAAVVISWDGEEEDEAQELLDKIRERNFGIPVFLLAERDT 78 (115)
T ss_dssp CHHHHHHHHHHHHHTTTEEEEESSHHHHHHHHHC---TTTEEEEEEECHHHHHHHHHHHHHHHHHHSTT-EEEEEESCCH
T ss_pred ChHHHHHHHHHHHHCCCEEEEeCChHHHHHHHHh---CCCeeEEEEEcccccchhHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 5567777777777777788777776655555432 247888888765 011234556666665668899999998777
Q ss_pred ccccccc---ccceeEEecCCCCcchhh
Q psy10684 138 GLGINLA---TADVVVLYDSDWNPQMDL 162 (288)
Q Consensus 138 ~~Glnl~---~a~~vi~~d~~wnp~~~~ 162 (288)
...++.. ..+.+|.+. .-+|.-+.
T Consensus 79 ~~~l~~~~l~~v~~~i~l~-~~t~~fia 105 (115)
T PF03709_consen 79 TEDLPAEVLGEVDGFIWLF-EDTAEFIA 105 (115)
T ss_dssp HHCCCHHHHCCESEEEETT-TTTHHHHH
T ss_pred cccCCHHHHhhccEEEEec-CCCHHHHH
Confidence 7777654 555556552 23444443
No 320
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=45.33 E-value=23 Score=25.02 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=28.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~ 108 (288)
..+.+++|||+...........|...|+. ...++|++
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~ 96 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGF 96 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcH
Confidence 45679999998766667777888888876 66788876
No 321
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=44.38 E-value=26 Score=25.99 Aligned_cols=38 Identities=8% Similarity=-0.043 Sum_probs=31.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCc--EEEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGF--KYCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~--~~~~~~G~~~ 109 (288)
..+..++++|+...........|...|+ ++..++|++.
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 3467899999887777778889999999 5788899873
No 322
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=44.11 E-value=42 Score=23.60 Aligned_cols=37 Identities=5% Similarity=-0.057 Sum_probs=29.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCc-EEEEeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGF-KYCRLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~-~~~~~~G~~ 108 (288)
..+++++++|............|...|+ ++..++|++
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~ 89 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGL 89 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCH
Confidence 4467899999987777778888888777 566688876
No 323
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=43.42 E-value=1.2e+02 Score=27.29 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=35.6
Q ss_pred CCCeEEEEec-chHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 73 QESRVLIFSQ-MTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 73 ~~~kviIFs~-~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.+.+++|||. .......+...|...|+++..+.|+...- |...++.+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~aw-r~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAY-RRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHH-HHhhHHHHh
Confidence 5678999995 33446667788888999989999998654 455556665
No 324
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=43.38 E-value=67 Score=28.56 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=29.8
Q ss_pred hCCCeEEEEec-chHHHHHHHHHHhhcCcEEEEeeCCCCH
Q psy10684 72 AQESRVLIFSQ-MTRMLDILEDYCYWRGFKYCRLDGQTAH 110 (288)
Q Consensus 72 ~~~~kviIFs~-~~~~~~~l~~~l~~~~~~~~~~~G~~~~ 110 (288)
..+.+++|||. ...........|...|+++..+.|+...
T Consensus 72 ~~~~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~a 111 (311)
T TIGR03167 72 DGPPQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKA 111 (311)
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHH
Confidence 33456999995 4455677788899999999999998753
No 325
>PLN02356 phosphateglycerate kinase
Probab=43.03 E-value=1.6e+02 Score=27.49 Aligned_cols=66 Identities=12% Similarity=-0.011 Sum_probs=54.8
Q ss_pred cCchHHHHHHHHHHHHhCCCe----EEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESR----VLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~k----viIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|.+....++....+.+.. +|+.++.-...-.++......|+++..+-......++.+.++.|.
T Consensus 81 GS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~G 150 (423)
T PLN02356 81 GSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALG 150 (423)
T ss_pred CCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHcC
Confidence 688999888888876665443 788788899999999999999999999887777778888888885
No 326
>PRK10329 glutaredoxin-like protein; Provisional
Probab=42.39 E-value=1.1e+02 Score=20.94 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=37.5
Q ss_pred eEEEEe-cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 76 RVLIFS-QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 76 kviIFs-~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
++.+|+ .+-..+..+...|...|+++..++-....+.+...... +...+.++++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~---g~~~vPvv~i 56 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQ---GFRQLPVVIA 56 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc---CCCCcCEEEE
Confidence 677887 45566888999999999999888877766555544332 3345555443
No 327
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=42.16 E-value=1.4e+02 Score=26.43 Aligned_cols=66 Identities=12% Similarity=-0.061 Sum_probs=51.2
Q ss_pred cCchHHHHHHHHHHHHhCC---CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQE---SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~---~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|.+....++....+++ .+.||-+..-.....++......|+++..+-.......+...++.|.
T Consensus 29 GS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~G 97 (316)
T cd06448 29 GSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEG 97 (316)
T ss_pred CChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcC
Confidence 6789987777777665554 44555555678888888899999999999988877788888888885
No 328
>KOG0347|consensus
Probab=41.67 E-value=23 Score=33.98 Aligned_cols=64 Identities=11% Similarity=0.258 Sum_probs=48.8
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQA 279 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa 279 (288)
++.-..++..|-+.+|-+-+++|. +.+. .|++. +..++-||++..-.|||+|.-+-.-.+.-+.
T Consensus 487 ~i~p~~LHA~M~QKqRLknLEkF~-~~~~-~VLia-TDVAARGLDIp~V~HVIHYqVPrtseiYVHR 550 (731)
T KOG0347|consen 487 DIPPLPLHASMIQKQRLKNLEKFK-QSPS-GVLIA-TDVAARGLDIPGVQHVIHYQVPRTSEIYVHR 550 (731)
T ss_pred CCCCchhhHHHHHHHHHHhHHHHh-cCCC-eEEEe-ehhhhccCCCCCcceEEEeecCCccceeEec
Confidence 344566788999999999999998 5554 35554 4788899999999999999877555444433
No 329
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=41.48 E-value=1.2e+02 Score=25.12 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHH
Q psy10684 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDR 113 (288)
Q Consensus 62 ~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R 113 (288)
...++...+...-.+|-||.+. ..+.+.+.++..++.++++||..+.+.-
T Consensus 41 ~a~~i~~~~~~~~~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHG~e~~~~~ 90 (207)
T PRK13958 41 QIKKLASAVPNHIDKVCVVVNP--DLTTIEHILSNTSINTIQLHGTESIDFI 90 (207)
T ss_pred HHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 3344444333334689999765 5677888888889999999999886643
No 330
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=40.85 E-value=65 Score=22.82 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=24.5
Q ss_pred hCCCeEEEEecchHHHHHHHHH-----HhhcCc-EEEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDY-----CYWRGF-KYCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~-----l~~~~~-~~~~~~G~~~ 109 (288)
..+..+|++|+........... |...|+ ++..+.|++.
T Consensus 65 ~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 65 DKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp TTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred cccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 4456799999544443433333 777787 7888888763
No 331
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=40.73 E-value=1e+02 Score=22.15 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=28.3
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT 108 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~ 108 (288)
.+.+++++|............|...|+..+...|++
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCH
Confidence 456889999888777788889999998766666765
No 332
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=40.66 E-value=25 Score=37.38 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=38.4
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeC
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD 268 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d 268 (288)
...+.|.++.++|.++...+ +.. -+++++..+..|+++..-++||.++
T Consensus 316 VlpLhg~Ls~~eQ~~Vf~~~----g~r-kIIVATNIAEtSITIpgI~yVID~G 363 (1294)
T PRK11131 316 ILPLYARLSNSEQNRVFQSH----SGR-RIVLATNVAETSLTVPGIKYVIDPG 363 (1294)
T ss_pred EeecccCCCHHHHHHHhccc----CCe-eEEEeccHHhhccccCcceEEEECC
Confidence 45689999999998876532 333 4667889999999999999999975
No 333
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=40.57 E-value=28 Score=37.03 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=40.0
Q ss_pred hhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCC
Q psy10684 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS 269 (288)
Q Consensus 214 i~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~ 269 (288)
+....+.|.++.++|+++...+ +..+ +++++..+..|+++.+-.+||.++.
T Consensus 307 ~~VlpLhg~Ls~~eQ~~vf~~~----~~rk-IVLATNIAEtSLTIpgV~yVIDsGl 357 (1283)
T TIGR01967 307 TEILPLYARLSNKEQQRVFQPH----SGRR-IVLATNVAETSLTVPGIHYVIDTGT 357 (1283)
T ss_pred cEEEeccCCCCHHHHHHHhCCC----CCce-EEEeccHHHhccccCCeeEEEeCCC
Confidence 4466789999999998875433 2334 5678899999999999999998873
No 334
>KOG0346|consensus
Probab=40.40 E-value=44 Score=31.17 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=56.8
Q ss_pred cccchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEee------------------------c-c---------ccc
Q psy10684 209 EEEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST------------------------R-A---------GGL 254 (288)
Q Consensus 209 e~~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~------------------------~-a---------gg~ 254 (288)
-+..|+..|.+.|.+|..-|.-+++.|| ..-..+++.|- + + -.-
T Consensus 288 LeqFGiksciLNseLP~NSR~Hii~QFN--kG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsR 365 (569)
T KOG0346|consen 288 LEQFGIKSCILNSELPANSRCHIIEQFN--KGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSR 365 (569)
T ss_pred HHHhCcHhhhhcccccccchhhHHHHhh--CcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhc
Confidence 3556899999999999999999999999 34444555443 0 1 123
Q ss_pred CCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 255 GINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 255 glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|++...-+.|+.+|-+-++.-.-+.++|.
T Consensus 366 GIDF~~V~~VlNFD~P~t~~sYIHRvGRT 394 (569)
T KOG0346|consen 366 GIDFHHVSNVLNFDFPETVTSYIHRVGRT 394 (569)
T ss_pred cccchheeeeeecCCCCchHHHHHhcccc
Confidence 68888899999999998888888888875
No 335
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=40.23 E-value=66 Score=23.66 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=29.7
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
..+.++|++|+...........|...|++ +..+.|++.
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 45678999998877778888899999986 445777764
No 336
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=39.89 E-value=78 Score=24.80 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=36.6
Q ss_pred cCchHH-HHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcE
Q psy10684 56 NSGKMV-VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFK 100 (288)
Q Consensus 56 ~s~K~~-~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~ 100 (288)
.++|.. .|-+++++....+.|+||-...+..++.+.+.|+...+.
T Consensus 14 GaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~ 59 (148)
T PF07652_consen 14 GAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVR 59 (148)
T ss_dssp TSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEE
T ss_pred CCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcc
Confidence 477887 588899988889999999999999999999999765533
No 337
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=39.61 E-value=41 Score=23.88 Aligned_cols=36 Identities=6% Similarity=0.155 Sum_probs=28.7
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCC
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQT 108 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~ 108 (288)
.+..+|+||............|...|++ +..+.|++
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~ 101 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSW 101 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcH
Confidence 4678999999877777888889888985 56677776
No 338
>PRK11761 cysM cysteine synthase B; Provisional
Probab=38.63 E-value=2e+02 Score=25.22 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=54.0
Q ss_pred ccCchHHHHHHHHHHHHhCCC----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQES----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|.+....++....+.+. +.||-+..-...-.++......|+++..+-.......+.+.++.|.
T Consensus 39 tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~G 109 (296)
T PRK11761 39 AGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYG 109 (296)
T ss_pred CCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcC
Confidence 367899988888887766654 5577788888888999999999999999888766677888888884
No 339
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=38.46 E-value=1.5e+02 Score=24.52 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHH
Q psy10684 63 LDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQIN 118 (288)
Q Consensus 63 l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~ 118 (288)
..++.+.+...-.+|.||.+. ..+.+.+.++..++.++++||..+.+.-..+.+
T Consensus 44 a~~i~~~~~~~i~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l~~ 97 (210)
T PRK01222 44 AAELAAALPPFVKVVGVFVNA--SDEEIDEIVETVPLDLLQLHGDETPEFCRQLKR 97 (210)
T ss_pred HHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHh
Confidence 334444333334689999864 556777788888999999999988665444433
No 340
>KOG1513|consensus
Probab=38.29 E-value=66 Score=32.51 Aligned_cols=70 Identities=23% Similarity=0.372 Sum_probs=47.7
Q ss_pred cchhhhcccCCCccccchhH-----------HHhhcccCCCCeeEEEEeecccccCCCccccceE--------EEeCCCC
Q psy10684 211 EDRYLYCRLDGQTAHEDRQR-----------QINDFNMEGSDIFIFMLSTRAGGLGINLATADVV--------VLYDSDW 271 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~-----------~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v--------~~~d~~w 271 (288)
++|--...-+|+...+.|.+ ...+|- +.+-.|.+|| .|++-|+.|+.--+| |.++++|
T Consensus 818 RrGrvV~te~g~v~ye~R~e~dvsld~vN~~EKqrFM--~GeK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPW 894 (1300)
T KOG1513|consen 818 RRGRVVSTEDGTVAYESRAEQDVSLDLVNLREKQRFM--DGEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPW 894 (1300)
T ss_pred cCceeEecCCCceeeecccccCCChhhcchHHHhhhc--cccceeeeee-hhhccCceeecchhhhhhhheEEEEEECCc
Confidence 34444444556555544422 223444 5666788999 888899999986655 5689999
Q ss_pred Chhhhhhhhhhh
Q psy10684 272 NPQMDLQAMVRT 283 (288)
Q Consensus 272 np~~~~Qa~~Ra 283 (288)
....--|-++|.
T Consensus 895 SADrAIQQFGRT 906 (1300)
T KOG1513|consen 895 SADRAIQQFGRT 906 (1300)
T ss_pred chhHHHHHhccc
Confidence 988888888886
No 341
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=38.25 E-value=49 Score=23.47 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=27.9
Q ss_pred CCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
+..++++|............|...|+. +..+.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 568999998766666777788888985 667888873
No 342
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=38.04 E-value=2.3e+02 Score=24.60 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=51.7
Q ss_pred cCchHHHHHHHHHHHHhCCC----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQES----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|...+..++....+++. +.||-+..-.....++...+..|+++..+-.......+...++.|.
T Consensus 30 gS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~G 99 (291)
T cd01561 30 GSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALG 99 (291)
T ss_pred CcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcC
Confidence 68899988888888776654 5566677888888999999999999988877665566667777764
No 343
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=37.76 E-value=2.3e+02 Score=24.44 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=54.0
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|...+..++....+++.+.||-+..-...-.+...+...|+++..+........+...++.|.
T Consensus 36 tgs~K~R~a~~~l~~a~~~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~G 102 (306)
T PF00291_consen 36 TGSFKDRGAYYLLSRAKEKGGRTVVGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRALG 102 (306)
T ss_dssp TSBTHHHHHHHHHHHHHHTTTSEEEEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHTT
T ss_pred cCCcccccchhhhhhccccccceeeeeccCCceehhhhhhhhccccceeeeccccccccccceeeec
Confidence 3588999999999887777767667777788888889899889999988887766667777777775
No 344
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=37.10 E-value=1.1e+02 Score=24.88 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=34.6
Q ss_pred cCchHHHHHHHHHHH--------HhCCCeEEEEecchHHHHHHHHHHhh
Q psy10684 56 NSGKMVVLDKLLPKL--------KAQESRVLIFSQMTRMLDILEDYCYW 96 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~--------~~~~~kviIFs~~~~~~~~l~~~l~~ 96 (288)
.++|...+..++..+ ...+.+++|-++....+|.+...|..
T Consensus 27 GTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 27 GTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp TSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 378999999999887 45678999999999999999988876
No 345
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=36.82 E-value=31 Score=35.53 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=51.8
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccc--------eEEEeCCCCChhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATAD--------VVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~--------~v~~~d~~wnp~~~~Qa~~R 282 (288)
..|+.+..+++ ...+|.+.+..|- ..+ . -.++++.-+|=|+++.-.+ +||..+.+=+.-++.|.++|
T Consensus 620 ~~gI~h~vLna--kq~~REa~Iia~A-G~~-g-~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GR 694 (1025)
T PRK12900 620 AKRIAHNVLNA--KQHDREAEIVAEA-GQK-G-AVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGR 694 (1025)
T ss_pred HcCCCceeecC--CHHHhHHHHHHhc-CCC-C-eEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhh
Confidence 45888888887 4668899999987 333 2 3455668888898887433 44888898899999999999
Q ss_pred h
Q psy10684 283 T 283 (288)
Q Consensus 283 a 283 (288)
|
T Consensus 695 t 695 (1025)
T PRK12900 695 A 695 (1025)
T ss_pred h
Confidence 8
No 346
>PLN02160 thiosulfate sulfurtransferase
Probab=36.76 E-value=72 Score=24.34 Aligned_cols=38 Identities=13% Similarity=-0.032 Sum_probs=31.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
..+.++|++|............|...|++ +..+.|++.
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 45678999999998888889999999985 666788773
No 347
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=36.42 E-value=94 Score=24.02 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCc-EEEEeeCCC
Q psy10684 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGF-KYCRLDGQT 108 (288)
Q Consensus 62 ~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~-~~~~~~G~~ 108 (288)
.|.+.+..+ ..+..+||+|............|...|+ ++..+.|++
T Consensus 38 ~l~~~l~~l-~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~ 84 (145)
T cd01535 38 QLAQALEKL-PAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGT 84 (145)
T ss_pred HHHHHHHhc-CCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcH
Confidence 344445443 3457899999987777778888888887 678899987
No 348
>PRK10638 glutaredoxin 3; Provisional
Probab=36.29 E-value=1.4e+02 Score=20.27 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=36.3
Q ss_pred eEEEEe-cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 76 RVLIFS-QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 76 kviIFs-~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
++.+|+ .+...+..+...|..+|+++..++=......+.... +.. +...+.++.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~-~~~-g~~~vP~i~~ 58 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMI-KRS-GRTTVPQIFI 58 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHH-HHh-CCCCcCEEEE
Confidence 577777 555668899999999999998887665555554443 333 3344444433
No 349
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=36.13 E-value=80 Score=21.11 Aligned_cols=38 Identities=8% Similarity=0.111 Sum_probs=29.6
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCc-EEEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGF-KYCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~-~~~~~~G~~~ 109 (288)
..+.++|++|............|...|+ ++..+.|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 4568999999987788888899988865 4556777763
No 350
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=35.59 E-value=1.5e+02 Score=23.67 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=46.6
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC-C---HHHHHHHHHhhcCCC-CCeeE
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT-A---HEDRQRQINDFNMEG-SDIFI 129 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~-~---~~~R~~~i~~F~~~~-~~~~v 129 (288)
-.|+|...+..+++ ....+.|+.|..+--.....=...++..|.....+.++. . ..+-...+.+..... .++..
T Consensus 9 LGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~~~~d~ 87 (178)
T PF02492_consen 9 LGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYEERPDR 87 (178)
T ss_dssp TTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCHGC-SE
T ss_pred CCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcCCCcCE
Confidence 36999999999997 456677776666544444444556677788888887654 2 224455666665222 13444
Q ss_pred EEEec
Q psy10684 130 FMLST 134 (288)
Q Consensus 130 ll~s~ 134 (288)
+++-+
T Consensus 88 IiIE~ 92 (178)
T PF02492_consen 88 IIIET 92 (178)
T ss_dssp EEEEE
T ss_pred EEECC
Confidence 45443
No 351
>KOG0337|consensus
Probab=35.43 E-value=24 Score=32.58 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=59.8
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhhhhc
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTVIAY 287 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~~~~ 287 (288)
..|+....+.|++.+..|..-+.+|+ . .. .-+|+++..+.=|++...-+.||.||.+=.|-.-...++|.-.+|
T Consensus 283 ~~g~~~s~iysslD~~aRk~~~~~F~-~-~k-~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~arag 356 (529)
T KOG0337|consen 283 DFGGEGSDIYSSLDQEARKINGRDFR-G-RK-TSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAG 356 (529)
T ss_pred hcCCCccccccccChHhhhhcccccc-C-Cc-cceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcc
Confidence 34677788899999999999999998 2 22 235677799999999999999999999888888888887775443
No 352
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=35.39 E-value=2.8e+02 Score=23.63 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc-CcEEE-EeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 60 MVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR-GFKYC-RLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 60 ~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~-~~~~~-~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
.+.+.++++.....+.++-++-.....++.+.+.|+.. ++..+ ..+|-.+.++.+.+++.-+. ++..++++..
T Consensus 91 ~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~--s~~dil~Vgl 165 (243)
T PRK03692 91 ADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHA--SGAKIVTVAM 165 (243)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEC
Confidence 34566677666566788989988889899998888664 67655 45777777777777887763 4445555553
No 353
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=35.30 E-value=97 Score=22.65 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=28.1
Q ss_pred CCCeEEEEecch-HHHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 73 QESRVLIFSQMT-RMLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 73 ~~~kviIFs~~~-~~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
.+..+|+||... .........|...|++ +..+.|++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 467899999883 6666677788888876 777888873
No 354
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=34.61 E-value=1.3e+02 Score=21.79 Aligned_cols=46 Identities=9% Similarity=0.119 Sum_probs=32.2
Q ss_pred HHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC
Q psy10684 63 LDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT 108 (288)
Q Consensus 63 l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~ 108 (288)
+...+..+. ..+..++++|............|...|++.+...|++
T Consensus 48 l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 94 (104)
T PRK10287 48 VKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGL 94 (104)
T ss_pred HHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCH
Confidence 444444432 2346799999887777777888888898766667765
No 355
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=34.25 E-value=83 Score=21.84 Aligned_cols=36 Identities=8% Similarity=0.191 Sum_probs=25.7
Q ss_pred CCCeEEEEecch--HHHHHHHHHHhhcCcE-EEEeeCCC
Q psy10684 73 QESRVLIFSQMT--RMLDILEDYCYWRGFK-YCRLDGQT 108 (288)
Q Consensus 73 ~~~kviIFs~~~--~~~~~l~~~l~~~~~~-~~~~~G~~ 108 (288)
.+.++|++|+.. .........|...|+. +..+.|++
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~ 87 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGL 87 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCH
Confidence 367899999983 3345666778888874 56678876
No 356
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=33.71 E-value=75 Score=21.94 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=29.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~ 108 (288)
..+.+++|+|+...........|...|+. +..+.|+.
T Consensus 54 ~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 54 DRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 45678999999887888888999998884 56777765
No 357
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=33.62 E-value=2.2e+02 Score=25.05 Aligned_cols=67 Identities=13% Similarity=0.021 Sum_probs=50.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|...+..++....+++.+.||-+..-...-.++......|+++..+-.......+...++.|.
T Consensus 50 tGS~K~R~a~~~l~~a~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~G 116 (324)
T cd01563 50 TGSFKDRGMTVAVSKAKELGVKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYG 116 (324)
T ss_pred cccHHHhhHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcC
Confidence 3578999888888887766655555555677777888888888999888766555566777777774
No 358
>PRK05320 rhodanese superfamily protein; Provisional
Probab=32.94 E-value=92 Score=26.79 Aligned_cols=38 Identities=13% Similarity=0.027 Sum_probs=32.6
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCCH
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTAH 110 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~~ 110 (288)
.+.++++||............|...|++ +..+.|++..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 4678999999988889999999999995 7788999844
No 359
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=32.93 E-value=54 Score=30.67 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=52.9
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccC-CCccccceEEEeCCCCChhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG-INLATADVVVLYDSDWNPQMDLQ 278 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~g-lnl~~a~~v~~~d~~wnp~~~~Q 278 (288)
+.++.|+.++.-++..+-.++-..|. .....++|+|-++==.= ..+.++.+||+|.||=+|.-...
T Consensus 322 ~~~~sF~~i~EYts~~~isRAR~~F~--~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~E 388 (442)
T PF06862_consen 322 KENISFVQISEYTSNSDISRARSQFF--HGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSE 388 (442)
T ss_pred hcCCeEEEecccCCHHHHHHHHHHHH--cCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHH
Confidence 55788999999999999889999997 67789999997762111 34667999999999999986553
No 360
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=32.76 E-value=2.9e+02 Score=24.05 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=52.2
Q ss_pred cCchHHHHHHHHHHHHhCCC----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQES----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|.+....++....+++. ..||-+..-.....++......|+++..+-.......+...++.|.
T Consensus 34 GS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~G 103 (298)
T TIGR01139 34 GSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYG 103 (298)
T ss_pred CcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHcC
Confidence 68899988888887666654 5577777788888888898999999998888766566777788775
No 361
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=32.69 E-value=3.3e+02 Score=23.61 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=53.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc-CcEEEEeeCCCCHH-HHHHHHHhhcCCCCCeeEEEEe
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR-GFKYCRLDGQTAHE-DRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~-~~~~~~~~G~~~~~-~R~~~i~~F~~~~~~~~vll~s 133 (288)
.|+-+-. ++.+.+.+++.++|+.+...+-++.|...++.. ++.+..+.-+.+.. +..++.+.-......+.+|+-+
T Consensus 14 ASsGIG~--~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 14 ASSGIGA--ELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred CCchHHH--HHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEEC
Confidence 3444442 344556678999999999999999999999875 57777776666544 3444444444233567776655
Q ss_pred cccccc
Q psy10684 134 TRAGGL 139 (288)
Q Consensus 134 ~~~~~~ 139 (288)
...|..
T Consensus 92 AG~g~~ 97 (265)
T COG0300 92 AGFGTF 97 (265)
T ss_pred CCcCCc
Confidence 444333
No 362
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=32.68 E-value=2.1e+02 Score=22.92 Aligned_cols=65 Identities=12% Similarity=0.267 Sum_probs=44.6
Q ss_pred ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 53 LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 53 ~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.++.++|...+.++.+...-.-+..|.|-.-....+.+. ..|+.++....+++.+.=++.++.|.
T Consensus 103 eI~~gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~----~lGV~~v~v~~Glt~~~~~~gL~~~~ 167 (169)
T PF12689_consen 103 EIYPGSKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVS----KLGVTCVLVPDGLTWDEFERGLEKFR 167 (169)
T ss_dssp EESSS-HHHHHHHHHHHH---GGGEEEEES-HHHHHHHH----TTT-EEEE-SSS--HHHHHHHHHHHH
T ss_pred heecCchHHHHHHHHHhcCCChhHEEEecCchhcceeeE----ecCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999998875445567888887777666643 37999999999999988888888886
No 363
>PLN00011 cysteine synthase
Probab=32.40 E-value=3e+02 Score=24.38 Aligned_cols=67 Identities=15% Similarity=0.033 Sum_probs=53.8
Q ss_pred ccCchHHHHHHHHHHHHhCC-----CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQE-----SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~-----~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|.+....++....+++ .+.||-+..-...-.++......|+++..+-.......+.+.++.|.
T Consensus 44 tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~G 115 (323)
T PLN00011 44 CSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALG 115 (323)
T ss_pred ccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcC
Confidence 46889999888888877765 35677788888888899999999999888877665577888888885
No 364
>PRK05569 flavodoxin; Provisional
Probab=32.03 E-value=2.2e+02 Score=21.38 Aligned_cols=58 Identities=10% Similarity=0.209 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecch----HHHHHHHHHHhhcCcEE---EEeeCCCCHHHHHHH
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMT----RMLDILEDYCYWRGFKY---CRLDGQTAHEDRQRQ 116 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~----~~~~~l~~~l~~~~~~~---~~~~G~~~~~~R~~~ 116 (288)
.+..+++.+......+.++.+|+.+. ..++.+...|...|+++ +.+.|....++..++
T Consensus 68 ~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~~~~ 132 (141)
T PRK05569 68 EMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLAVNESPNKEELNSA 132 (141)
T ss_pred HHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEEEccCCCHHHHHHH
Confidence 34555555544334578999998753 34667778888777644 556676665555544
No 365
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=32.01 E-value=49 Score=23.50 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=31.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEE-EeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYC-RLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~-~~~G~~ 108 (288)
..+.+++|+|+....-......|...|+..+ .+.|++
T Consensus 59 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~ 96 (110)
T COG0607 59 PDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGI 96 (110)
T ss_pred CCCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcH
Confidence 4567899999999998999999999998887 667766
No 366
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=31.29 E-value=3.1e+02 Score=23.92 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=52.3
Q ss_pred cCchHHHHHHHHHHHHhCCC----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQES----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|.+....++....+.+. ..||-+..-.....++-..+..|+++..+-.......+...++.|.
T Consensus 35 GS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~G 104 (299)
T TIGR01136 35 GSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYG 104 (299)
T ss_pred CCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcC
Confidence 57899888888877666554 5577777888888888888999999999988776677778888875
No 367
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=31.25 E-value=2.4e+02 Score=21.53 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=48.1
Q ss_pred cCchHHHHHHHH-HHHHhC-CCeEEEEecchHHHHHHHHHHhhc----CcEEEEeeCCCCHH-HHHHHHHhhcCCCCCee
Q psy10684 56 NSGKMVVLDKLL-PKLKAQ-ESRVLIFSQMTRMLDILEDYCYWR----GFKYCRLDGQTAHE-DRQRQINDFNMEGSDIF 128 (288)
Q Consensus 56 ~s~K~~~l~~ll-~~~~~~-~~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~~G~~~~~-~R~~~i~~F~~~~~~~~ 128 (288)
.++|-....-.+ ..+.+. ..++++.+.....++.....+... ++....++|+.+.. +....+ . .++.
T Consensus 24 GsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~ 97 (169)
T PF00270_consen 24 GSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL---S---NQAD 97 (169)
T ss_dssp TSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH---H---TTSS
T ss_pred CCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc---c---cccc
Confidence 588988766444 444443 249999999998877777666554 46788889988754 333333 2 2345
Q ss_pred EEEEeccc
Q psy10684 129 IFMLSTRA 136 (288)
Q Consensus 129 vll~s~~~ 136 (288)
+++.++..
T Consensus 98 ilv~T~~~ 105 (169)
T PF00270_consen 98 ILVTTPEQ 105 (169)
T ss_dssp EEEEEHHH
T ss_pred ccccCcch
Confidence 56666553
No 368
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=30.74 E-value=1.6e+02 Score=19.29 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=37.5
Q ss_pred eEEEEecc-hHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 76 RVLIFSQM-TRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 76 kviIFs~~-~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
++.||+.. ...+......|..+|+++..++=......+.+..+.- +...+.++++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~--g~~~vP~v~i~ 58 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERT--GSSVVPQIFFN 58 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh--CCCCcCEEEEC
Confidence 56677654 5668889999999999999887776665555554443 23444444444
No 369
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=30.44 E-value=2.2e+02 Score=25.55 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=36.2
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEe
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRL 104 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~ 104 (288)
.++-...+..+++++.+.|+.|+|.+.-.. .+.+.|+..|+++..+
T Consensus 9 ~p~hvhfFk~~I~eL~~~GheV~it~R~~~---~~~~LL~~yg~~y~~i 54 (335)
T PF04007_consen 9 HPAHVHFFKNIIRELEKRGHEVLITARDKD---ETEELLDLYGIDYIVI 54 (335)
T ss_pred CchHHHHHHHHHHHHHhCCCEEEEEEeccc---hHHHHHHHcCCCeEEE
Confidence 455677888999999999999999997654 4555667778888777
No 370
>PRK10717 cysteine synthase A; Provisional
Probab=30.07 E-value=3.3e+02 Score=24.14 Aligned_cols=66 Identities=11% Similarity=0.007 Sum_probs=52.5
Q ss_pred cCchHHHHHHHHHHHHhCCC----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQES----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|.+....++....+.+. ..||-+..-...-.++......|+++..+-.......+.+.++.|.
T Consensus 41 GS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~G 110 (330)
T PRK10717 41 GSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALG 110 (330)
T ss_pred CCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcC
Confidence 57799888888877666654 4567777888888899899989999998888776677888888885
No 371
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=29.97 E-value=84 Score=22.58 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCeEEEEecchH-HHHHHHHHHhhcCcEE
Q psy10684 63 LDKLLPKLKAQESRVLIFSQMTR-MLDILEDYCYWRGFKY 101 (288)
Q Consensus 63 l~~ll~~~~~~~~kviIFs~~~~-~~~~l~~~l~~~~~~~ 101 (288)
..+.++.+++.+.++++.|+... ....+...|+..|++.
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 45667777788889999998864 4477888888888874
No 372
>KOG0952|consensus
Probab=29.63 E-value=7e+02 Score=26.44 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=74.8
Q ss_pred ceeEEecCCCCcchhhhh-hHHHHH--HhhhcchHHHHHHHhhhhccccchhhhhhccCCC-----------------cc
Q psy10684 147 DVVVLYDSDWNPQMDLQA-MVREAK--ILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKG-----------------KN 206 (288)
Q Consensus 147 ~~vi~~d~~wnp~~~~Qa-~~R~~R--~Gq~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 206 (288)
-.++.||.-+-|.-+.|- +|+-.- .-|+...++...+++.++....+++.++...... ++
T Consensus 301 ~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~ 380 (1230)
T KOG0952|consen 301 AGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKD 380 (1230)
T ss_pred cceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCccc
Confidence 457788887777665553 333222 1233334555566666666666666544322111 00
Q ss_pred --cccccc-------hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEe-CCCCChhh-
Q psy10684 207 --YTEEED-------RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLY-DSDWNPQM- 275 (288)
Q Consensus 207 --~~e~~~-------gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~-d~~wnp~~- 275 (288)
...... ...+..=+-++..++|+-+-+.|. +..++|+. ++..-+.|.||.|= .||+- -+.|++..
T Consensus 381 ~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~--~G~i~vL~-cTaTLAwGVNLPA~-aViIKGT~~ydsskg 456 (1230)
T KOG0952|consen 381 LFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFK--EGHIKVLC-CTATLAWGVNLPAY-AVIIKGTQVYDSSKG 456 (1230)
T ss_pred ccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHh--cCCceEEE-ecceeeeccCCcce-EEEecCCcccccccC
Confidence 000100 122233355788888888888887 66666544 55677799999754 44444 34477765
Q ss_pred ---------hhhhhhhh
Q psy10684 276 ---------DLQAMVRT 283 (288)
Q Consensus 276 ---------~~Qa~~Ra 283 (288)
..|-++||
T Consensus 457 ~f~dlgilDVlQifGRA 473 (1230)
T KOG0952|consen 457 SFVDLGILDVLQIFGRA 473 (1230)
T ss_pred ceeeehHHHHHHHHhcc
Confidence 44999998
No 373
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=29.60 E-value=1.9e+02 Score=22.22 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=38.9
Q ss_pred eEEEEecchHHHHHHHHHHhhcCcE--EEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 76 RVLIFSQMTRMLDILEDYCYWRGFK--YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 76 kviIFs~~~~~~~~l~~~l~~~~~~--~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+=++||+-.+...+...+..+|+. +..=.|....-.-.+.++.|. .++.++++++...
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~-~D~~t~~I~ly~E 63 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLA-EDPDTRVIVLYLE 63 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHC-T-SS--EEEEEES
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHh-cCCCCCEEEEEcc
Confidence 4668999999999898888887654 455567766667788999998 6788888665543
No 374
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=29.53 E-value=1.7e+02 Score=23.07 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=27.5
Q ss_pred hCCCeEEEEecchH-HHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTR-MLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~-~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
..+..+|+||.... ........|...|++ +..++|++.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 35678999999754 345566777888886 556788873
No 375
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=29.48 E-value=3.3e+02 Score=24.37 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=49.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc----CCCCCeeEEEEe
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN----MEGSDIFIFMLS 133 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~----~~~~~~~vll~s 133 (288)
-+.++|||.-.-...-...+..|+..|+++.++-|..-.+.-.++...|+ ..-+++++++++
T Consensus 74 lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 74 LNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred hCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 35689999999999889999999999999999999987777777777774 122335666665
No 376
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=29.37 E-value=3.6e+02 Score=22.94 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=49.4
Q ss_pred CchHHHHHHHHHHHHhCC---CeEEEEecchHHHH-HHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 57 SGKMVVLDKLLPKLKAQE---SRVLIFSQMTRMLD-ILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~---~kviIFs~~~~~~~-~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
+.|.....+.++.+...+ ..++|=-...++++ .|...+. .|++. ..|+++..+-.+++..+. ... +++
T Consensus 137 ~nK~e~t~~ildi~~~~~l~~~lvvIDH~N~etv~~vld~e~~-vGlTv--qPgKlt~~eAveIV~ey~--~~r---~il 208 (254)
T COG1099 137 RNKKEATSKILDILIESGLKPSLVVIDHVNEETVDEVLDEEFY-VGLTV--QPGKLTVEEAVEIVREYG--AER---IIL 208 (254)
T ss_pred CcchhHHHHHHHHHHHcCCChhheehhcccHHHHHHHHhccce-EEEEe--cCCcCCHHHHHHHHHHhC--cce---EEE
Confidence 457777777776655443 34555555555666 4444443 34443 449999999999999996 222 578
Q ss_pred eccccccccc
Q psy10684 133 STRAGGLGIN 142 (288)
Q Consensus 133 s~~~~~~Gln 142 (288)
++++++.--|
T Consensus 209 nSD~~s~~sd 218 (254)
T COG1099 209 NSDAGSAASD 218 (254)
T ss_pred eccccccccc
Confidence 8887765444
No 377
>KOG0949|consensus
Probab=29.25 E-value=81 Score=32.69 Aligned_cols=61 Identities=23% Similarity=0.188 Sum_probs=46.8
Q ss_pred CCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC-CChhhhhhhhhhh
Q psy10684 220 DGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD-WNPQMDLQAMVRT 283 (288)
Q Consensus 220 ~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~-wnp~~~~Qa~~Ra 283 (288)
+..++...|+.+---|+ .....| |+++.+-+.|+|+..-..|+.-|.= -||-+..|+-+||
T Consensus 969 HaglNr~yR~~VEvLFR--~g~L~V-lfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRA 1030 (1330)
T KOG0949|consen 969 HAGLNRKYRSLVEVLFR--QGHLQV-LFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRA 1030 (1330)
T ss_pred ccccchHHHHHHHHHhh--cCceEE-EEEeeehhcccCCCceeEEEeccccccCchhHHhhhccc
Confidence 44566667766666676 555554 5577999999999987777777654 9999999999999
No 378
>PRK06608 threonine dehydratase; Provisional
Probab=29.22 E-value=3.1e+02 Score=24.60 Aligned_cols=67 Identities=12% Similarity=-0.057 Sum_probs=52.0
Q ss_pred ccCchHHHHHHHHHHHHhCCC--eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQES--RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~--kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|.+....++....+++. +.||-+..-.....++-.....|+++..+-.......+.+.++.|.
T Consensus 50 tGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~G 118 (338)
T PRK06608 50 TGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYG 118 (338)
T ss_pred CCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCC
Confidence 357799887777777666654 5666667788888888888889999888877766677888888884
No 379
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=29.21 E-value=51 Score=33.68 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=53.1
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcc-------------------------------
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA------------------------------- 259 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~------------------------------- 259 (288)
..++.+..+.++.+..+|..+.++|+ ... .++++.-+|=|.++.
T Consensus 471 ~~gi~~~vLnak~~~~Ea~ii~~Ag~--~G~---VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (908)
T PRK13107 471 KEKIPHEVLNAKFHEREAEIVAQAGR--TGA---VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRH 545 (908)
T ss_pred HCCCCeEeccCcccHHHHHHHHhCCC--CCc---EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhH
Confidence 45889999999999999999999998 232 455557777775443
Q ss_pred ------ccceEEEeCCCCChhhhhhhhhhh
Q psy10684 260 ------TADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 260 ------~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.=+||.-+.+=+--++.|..+||
T Consensus 546 ~~V~~~GGL~VIgTerheSrRID~QLrGRa 575 (908)
T PRK13107 546 DEVVAAGGLHILGTERHESRRIDNQLRGRA 575 (908)
T ss_pred HHHHHcCCCEEEecccCchHHHHhhhhccc
Confidence 334788888888888999999998
No 380
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=28.56 E-value=2.8e+02 Score=21.40 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHH--HhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC
Q psy10684 59 KMVVLDKLLPKL--KAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT 108 (288)
Q Consensus 59 K~~~l~~ll~~~--~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~ 108 (288)
-...++++++.. .-.+.+++|+..+...-.-+...|...|......|..+
T Consensus 11 t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t 62 (140)
T cd05212 11 VAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT 62 (140)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC
Confidence 456777888763 23478999999999999999999999999988888665
No 381
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=28.42 E-value=2.2e+02 Score=24.76 Aligned_cols=67 Identities=12% Similarity=0.005 Sum_probs=48.7
Q ss_pred ccCchHHHHHHHHHHHHhCC-CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQE-SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~-~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|......++..+.+.+ .+.||-+..-.+...+...+...|+++..+-.......+...++.|.
T Consensus 44 tgS~Kdr~a~~~l~~~~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~G 111 (304)
T cd01562 44 TGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYG 111 (304)
T ss_pred cCCcHHHhHHHHHHhcCHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcC
Confidence 36788888777777655443 34445555688888999999999999888877665666777778775
No 382
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=28.10 E-value=1.2e+02 Score=19.65 Aligned_cols=32 Identities=6% Similarity=-0.057 Sum_probs=19.0
Q ss_pred EEEEecchHHHHHHHHHHhhcCcEEEEeeCCC
Q psy10684 77 VLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT 108 (288)
Q Consensus 77 viIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~ 108 (288)
-|..+...-.+.++...|+..||++...+..+
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 45667777789999999999999987655433
No 383
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=27.62 E-value=4.3e+02 Score=24.32 Aligned_cols=59 Identities=10% Similarity=0.205 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCC----CCHHHHHHHHH
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQ----TAHEDRQRQIN 118 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~----~~~~~R~~~i~ 118 (288)
=.-.+...+..+.+.++||||..+ -.+-+.+.+.++..|.++..+.-+ .++++-.+.++
T Consensus 65 Gt~amEAav~sl~~pgdkVLv~~n-G~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~ 127 (383)
T COG0075 65 GTLAMEAAVASLVEPGDKVLVVVN-GKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALD 127 (383)
T ss_pred cHHHHHHHHHhccCCCCeEEEEeC-ChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh
Confidence 344666677777778888888775 556677777777777777776655 23344444444
No 384
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=27.48 E-value=3.7e+02 Score=23.76 Aligned_cols=67 Identities=10% Similarity=0.005 Sum_probs=49.9
Q ss_pred ccCchHHHHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|.+....++..+. ..+.+.||-+..-...-.++......|+++..+-.......+.+.++.|.
T Consensus 46 tGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~G 113 (317)
T TIGR02991 46 TGSFKLRGATNAVLSLSDTQRAAGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLG 113 (317)
T ss_pred CCCcHHHHHHHHHHhhhHhccCCeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcC
Confidence 35789988887776544 23345566666788888888899999999988877766677777788774
No 385
>PRK08329 threonine synthase; Validated
Probab=27.46 E-value=4.1e+02 Score=23.82 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=54.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|.+....++....+.+.+.||-+..-.....++.+....|+++..+-.......+...++.|.
T Consensus 84 tGSfKdRga~~~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~G 150 (347)
T PRK08329 84 TGSFKDRGTYVTVAKLKEEGINEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLG 150 (347)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcC
Confidence 3688999888888877777777778887888888999999999999888877666666777777775
No 386
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=27.20 E-value=3.4e+02 Score=25.70 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchH----HHHHHHHHHhhcCcEEEEe-eCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTR----MLDILEDYCYWRGFKYCRL-DGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~----~~~~l~~~l~~~~~~~~~~-~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
++....+.+.....++++++||+.+-. ..-++...|...|+.+..+ -.+....-= +++.......+ +++.
T Consensus 21 ~~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g--~~~~~~~~~~~---liIt 95 (491)
T COG0608 21 DMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYG--AIRKLKEEGAD---LIIT 95 (491)
T ss_pred hHHHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccch--HHHHHHhcCCC---EEEE
Confidence 555566666666788999999998754 3567778888888544332 122211110 23433322233 4788
Q ss_pred ccccccccccccc-----ceeEEecCC
Q psy10684 134 TRAGGLGINLATA-----DVVVLYDSD 155 (288)
Q Consensus 134 ~~~~~~Glnl~~a-----~~vi~~d~~ 155 (288)
.+.|.-.++.... -.||..|.+
T Consensus 96 vD~G~~~~~~i~~~~~~g~~vIVtDHH 122 (491)
T COG0608 96 VDNGSGSLEEIARAKELGIDVIVTDHH 122 (491)
T ss_pred ECCCcccHHHHHHHHhCCCcEEEECCC
Confidence 8888887776653 678888877
No 387
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=26.89 E-value=2.8e+02 Score=23.14 Aligned_cols=29 Identities=10% Similarity=0.034 Sum_probs=26.5
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK 100 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~ 100 (288)
..+.+++|++.+..+-..++..|..+|+.
T Consensus 138 ~~~~~~vil~~~~~~P~~IA~~L~~~G~~ 166 (210)
T COG2241 138 ENGRRLVILTPDDFGPAEIAKLLTENGIG 166 (210)
T ss_pred hCCceEEEeCCCCCCHHHHHHHHHhCCCC
Confidence 56889999999999999999999999975
No 388
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=26.85 E-value=1e+02 Score=24.76 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=21.9
Q ss_pred hCCCeEEEEecchHH--HHHHHHHHhhcCcEEEEee
Q psy10684 72 AQESRVLIFSQMTRM--LDILEDYCYWRGFKYCRLD 105 (288)
Q Consensus 72 ~~~~kviIFs~~~~~--~~~l~~~l~~~~~~~~~~~ 105 (288)
..-++|++||.+... +..+.+.|...|++++.+.
T Consensus 80 t~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 80 TETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp -TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 345799999999876 4456678888899998887
No 389
>PRK07409 threonine synthase; Validated
Probab=26.70 E-value=3.6e+02 Score=24.23 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=50.5
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC-CHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT-AHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~-~~~~R~~~i~~F~ 121 (288)
.|-|.+....++....+++.+.||-+..-...-.++......|+++..+-... ....+.+.+..|.
T Consensus 59 GSfKdR~a~~~l~~a~~~g~~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~G 125 (353)
T PRK07409 59 GSFKDRGMTMAVTKAKEEGAKAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYG 125 (353)
T ss_pred cchHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcC
Confidence 57899988888887777777777777777888888888888999987776654 3456666777774
No 390
>KOG0329|consensus
Probab=26.03 E-value=1.8e+02 Score=25.29 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=33.4
Q ss_pred EEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 246 MLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 246 l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++++..=|-|+.....|-++.||-+=.|......++||
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rA 339 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARA 339 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhh
Confidence 34556678899999999999999999999999999998
No 391
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=25.84 E-value=4.5e+02 Score=22.92 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=39.0
Q ss_pred HHHhhcCCCCCCCCCCCCCCCCCCccccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh---cCcEEEE
Q psy10684 27 QLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW---RGFKYCR 103 (288)
Q Consensus 27 ~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~---~~~~~~~ 103 (288)
-+.-+...|.|+--.++.+- . +.--.++|.+.+.++.+.| +.||||.+ .++.+++.|.. ..-.-..
T Consensus 141 fisaviHePeLlILDEPFSG---L-----DPVN~elLk~~I~~lk~~G-atIifSsH--~Me~vEeLCD~llmL~kG~~V 209 (300)
T COG4152 141 FISAVIHEPELLILDEPFSG---L-----DPVNVELLKDAIFELKEEG-ATIIFSSH--RMEHVEELCDRLLMLKKGQTV 209 (300)
T ss_pred HHHHHhcCCCEEEecCCccC---C-----ChhhHHHHHHHHHHHHhcC-CEEEEecc--hHHHHHHHhhhhheecCCceE
Confidence 34445567877654443321 1 2234667888888776665 67778765 33444444432 2223345
Q ss_pred eeCCC
Q psy10684 104 LDGQT 108 (288)
Q Consensus 104 ~~G~~ 108 (288)
++|.+
T Consensus 210 ~~G~v 214 (300)
T COG4152 210 LYGTV 214 (300)
T ss_pred EeccH
Confidence 67765
No 392
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=25.68 E-value=4e+02 Score=24.71 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=52.8
Q ss_pred ccCchHHHHHHHHHHHHhCCC----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQES----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|.+....++....+++. +.||-+........++......|+++..+-.......+...++.|.
T Consensus 38 tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~G 108 (454)
T TIGR01137 38 GGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALG 108 (454)
T ss_pred CcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHCC
Confidence 368899988888887666554 5677778888888999999999999888877655577878888885
No 393
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=25.44 E-value=1.2e+02 Score=30.19 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=40.2
Q ss_pred hHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 229 QRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 229 ~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
.+.+++|. ++..+.+++ +..--.+|.+....+.+++.-|--.. .-.||++|.-
T Consensus 580 ~~~~~~Fk-~~~~~~ilI-VvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~n 632 (667)
T TIGR00348 580 YKDLERFK-KEENPKLLI-VVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTN 632 (667)
T ss_pred HHHHHHhc-CCCCceEEE-EEcccccccCCCccceEEEecccccc-HHHHHHHHhc
Confidence 47889997 445566554 44777789999999999998887544 4579999984
No 394
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.41 E-value=75 Score=30.73 Aligned_cols=127 Identities=13% Similarity=0.068 Sum_probs=68.7
Q ss_pred ccchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCccccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHH
Q psy10684 15 KLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYC 94 (288)
Q Consensus 15 ~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l 94 (288)
+.+.-.+-+.+..|+++..||....-............++...|-+...+.+|++ -..|++|||.-+. ...|
T Consensus 191 k~al~~~~~f~~NL~~m~~s~~~q~lls~~K~~~~~aiIVSaGPSL~Kql~lLK~---y~~k~~IFcadsa-----l~~L 262 (594)
T COG2604 191 KDALLGIKQFLDNLPSMLTSPSYQELLSKRKNISEPAIIVSAGPSLEKQLPLLKK---YQDKATIFCADSA-----LPIL 262 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHHHHHHHhcCCCCceEEEcCCcChhhccHHHHh---cccceEEEECCCc-----chHH
Confidence 3445557778888999999997754322111111233455566777777778775 3469999997544 3556
Q ss_pred hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeE-EEEecccccccccccccceeEEec
Q psy10684 95 YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFI-FMLSTRAGGLGINLATADVVVLYD 153 (288)
Q Consensus 95 ~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~v-ll~s~~~~~~Glnl~~a~~vi~~d 153 (288)
..+||.+-.+.- -+|......|-.+.....+ ++.+.-+..+-++--..+..++++
T Consensus 263 ~k~GIkPDyVc~----ld~~di~~e~~~n~~~k~ip~~~~~~~h~~vv~~~kg~k~~~~~ 318 (594)
T COG2604 263 AKHGIKPDYVCS----LDPDDIAYEFFQNDFNKDIPLILASITHPRVVEYLKGNKIFFFR 318 (594)
T ss_pred HhcCCCCCeEEE----ecchHHHHHHHhcccCCCcceeeeccccHHHHHhhccCcEEEEe
Confidence 677775322221 2444455444434444333 333333333333333344444444
No 395
>PRK01415 hypothetical protein; Validated
Probab=25.36 E-value=93 Score=26.67 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=33.0
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCCH
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTAH 110 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~~ 110 (288)
..+.++++||.....+......|...|++ +..+.|++..
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~ 208 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQ 208 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHH
Confidence 34678999999999999999999999996 7789998743
No 396
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=25.31 E-value=3.7e+02 Score=23.74 Aligned_cols=67 Identities=15% Similarity=-0.026 Sum_probs=49.9
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC-CHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT-AHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~-~~~~R~~~i~~F~ 121 (288)
..|-|...+..++....+.+.+.||-+..-...-.++......|+++..+.... ....+...+..+.
T Consensus 51 tGSfKdR~a~~~l~~a~~~g~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~G 118 (328)
T TIGR00260 51 TLSFKDRGMAVALTKALELGNDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYN 118 (328)
T ss_pred chhhHhhhHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 357788888888877777777777777788888888888888899988887764 3455666666553
No 397
>PRK06352 threonine synthase; Validated
Probab=25.29 E-value=4.3e+02 Score=23.79 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=52.2
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC-CHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT-AHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~-~~~~R~~~i~~F~ 121 (288)
..|-|.+....++....+++.+.||-+..-..--.++......|+++..+-... ....+...++.|.
T Consensus 55 tGS~KdR~a~~~i~~a~~~g~~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~G 122 (351)
T PRK06352 55 TGSFKDRGMVMAVAKAKEEGAEAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYG 122 (351)
T ss_pred ccChHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcC
Confidence 368899988888888777777777877778888888889999999998887664 3455666667774
No 398
>KOG1805|consensus
Probab=24.85 E-value=1.8e+02 Score=30.20 Aligned_cols=52 Identities=23% Similarity=0.190 Sum_probs=46.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCC
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQ 107 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~ 107 (288)
..+|...+..+++-+...+.||++-|.....+|-|-..|..-++.+.++-..
T Consensus 695 GTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~ 746 (1100)
T KOG1805|consen 695 GTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSE 746 (1100)
T ss_pred CCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCc
Confidence 6889999999999999999999999999999999999999999988877433
No 399
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=24.25 E-value=1.9e+02 Score=18.18 Aligned_cols=54 Identities=9% Similarity=0.245 Sum_probs=37.2
Q ss_pred EEEE-ecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 77 VLIF-SQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 77 viIF-s~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
+.+| +.+...+..+...|...++.+..++=....+.+.+..+.+. ...+.++++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~--~~~vP~~~~ 56 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLG--QRGVPVIVI 56 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhC--CCcccEEEE
Confidence 3444 45566788888889989999988877666666666677774 345555544
No 400
>PHA02977 hypothetical protein; Provisional
Probab=24.08 E-value=32 Score=26.62 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=9.7
Q ss_pred EEeCCCCChhhh
Q psy10684 265 VLYDSDWNPQMD 276 (288)
Q Consensus 265 ~~~d~~wnp~~~ 276 (288)
|+.|++|+|++.
T Consensus 157 i~~d~~w~phit 168 (201)
T PHA02977 157 ILSDNPWCPHIT 168 (201)
T ss_pred cccCCCCCCceE
Confidence 567999999863
No 401
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=24.06 E-value=43 Score=32.45 Aligned_cols=69 Identities=12% Similarity=0.121 Sum_probs=52.9
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE----eC-CCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD-SDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~----~d-~~wnp~~~~Qa~~Ra 283 (288)
..|++...++++++..+|+.+-..|. +.++. .++++.|-|.|.+..| |.||+ |. -|-+|.--.|-.+||
T Consensus 462 ~kG~~a~pYHaGL~y~eRk~vE~~F~--~q~l~-~VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRA 535 (830)
T COG1202 462 GKGLKAAPYHAGLPYKERKSVERAFA--AQELA-AVVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRA 535 (830)
T ss_pred cCCcccccccCCCcHHHHHHHHHHHh--cCCcc-eEeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhccc
Confidence 34899999999999999999999998 33433 4567788888988764 55554 33 455777778999998
No 402
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=23.88 E-value=2.2e+02 Score=21.72 Aligned_cols=49 Identities=8% Similarity=-0.042 Sum_probs=29.4
Q ss_pred HHHHHHHHHHH-hCCCeEEEEecc---hHHHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 61 VVLDKLLPKLK-AQESRVLIFSQM---TRMLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 61 ~~l~~ll~~~~-~~~~kviIFs~~---~~~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
+.+.+++..+. ..+.+|||||.. ....-.+.-.|+..|.+ +..|+|+.+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 34555665532 346789999964 23334444456666765 557888763
No 403
>PRK06721 threonine synthase; Reviewed
Probab=23.18 E-value=5.2e+02 Score=23.21 Aligned_cols=66 Identities=15% Similarity=0.058 Sum_probs=50.9
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC-CHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT-AHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~-~~~~R~~~i~~F~ 121 (288)
.|-|......++....+++.+.||=+..-...-.++......|+++..+-... ....+...++.|.
T Consensus 56 GS~KdR~a~~~i~~a~~~g~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~G 122 (352)
T PRK06721 56 GSFKDRGMVMAVAKAKEEGSEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYG 122 (352)
T ss_pred cchHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcC
Confidence 68899988888888777777777777777787888888888999988887664 3455666677764
No 404
>PRK07476 eutB threonine dehydratase; Provisional
Probab=23.16 E-value=3.2e+02 Score=24.20 Aligned_cols=67 Identities=16% Similarity=0.046 Sum_probs=49.2
Q ss_pred ccCchHHHHHHHHHHHHhCC-CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQE-SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~-~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|.+....++..+.+.+ .+-||-+..-.....++......|+++..+-.......+...++.|.
T Consensus 46 tGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~G 113 (322)
T PRK07476 46 TGSFKLRGATNALLSLSAQERARGVVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALG 113 (322)
T ss_pred CCCchHHHHHHHHHhhhhhhhCCeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcC
Confidence 46889998877777655554 34244445677778888888889999888877766677777788775
No 405
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=23.16 E-value=2e+02 Score=17.89 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=32.3
Q ss_pred EEEEec-chHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhh
Q psy10684 77 VLIFSQ-MTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDF 120 (288)
Q Consensus 77 viIFs~-~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F 120 (288)
|++|+. +-..+......|+..|+++..++=....+.++.+.+..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~ 45 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELS 45 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHH
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHc
Confidence 345544 34558888899999999998888777766777666655
No 406
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=23.11 E-value=1.9e+02 Score=24.25 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCcEEEEeeCCC-CHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 86 MLDILEDYCYWRGFKYCRLDGQT-AHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 86 ~~~~l~~~l~~~~~~~~~~~G~~-~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
.++-+..+|...+..++.+++.- +.+.|+.+++.|. . .+++|+++-
T Consensus 83 ~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~-~-~~~~vlFIE 129 (222)
T PF01591_consen 83 ALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFK-E-HGIKVLFIE 129 (222)
T ss_dssp HHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHH-H-TT-EEEEEE
T ss_pred HHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHH-H-cCCcEEEEE
Confidence 45556667777777889999874 5567777888886 2 335555444
No 407
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=23.03 E-value=1.3e+02 Score=22.54 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=27.1
Q ss_pred CCCeEEEEecchHH---------HHHHHHHHhh---cCcEEEEeeCCC
Q psy10684 73 QESRVLIFSQMTRM---------LDILEDYCYW---RGFKYCRLDGQT 108 (288)
Q Consensus 73 ~~~kviIFs~~~~~---------~~~l~~~l~~---~~~~~~~~~G~~ 108 (288)
....||||++.... +..+...|.+ .+.++..+.|+.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~ 121 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGF 121 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchH
Confidence 45789999987764 6667777776 456788889986
No 408
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=22.76 E-value=2.4e+02 Score=18.64 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=30.7
Q ss_pred EEEe-cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHh
Q psy10684 78 LIFS-QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQIND 119 (288)
Q Consensus 78 iIFs-~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~ 119 (288)
.||+ .+...+......|+..|+++..++-....+.+++..+.
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~ 44 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQR 44 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHH
Confidence 3444 55667888889999999998888877776666665443
No 409
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=22.72 E-value=4.9e+02 Score=24.43 Aligned_cols=85 Identities=20% Similarity=0.238 Sum_probs=56.1
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecch---HHHHHHHHHHhhcCcEEEEeeCCC-CHHHHHHHHHhhcCCCCCeeE
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMT---RMLDILEDYCYWRGFKYCRLDGQT-AHEDRQRQINDFNMEGSDIFI 129 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~---~~~~~l~~~l~~~~~~~~~~~G~~-~~~~R~~~i~~F~~~~~~~~v 129 (288)
+..|+|....-++-..+...+.|+++-+.-+ ...+.|...-...++++....... +.+--.+.++.|+. ....|
T Consensus 108 LQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~--~~~Dv 185 (451)
T COG0541 108 LQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKE--EGYDV 185 (451)
T ss_pred ccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHH--cCCCE
Confidence 4589999988888877777888988886533 346777777777788887774344 44445677888873 33344
Q ss_pred EEEecccccccc
Q psy10684 130 FMLSTRAGGLGI 141 (288)
Q Consensus 130 ll~s~~~~~~Gl 141 (288)
+++. .+|...+
T Consensus 186 vIvD-TAGRl~i 196 (451)
T COG0541 186 VIVD-TAGRLHI 196 (451)
T ss_pred EEEe-CCCcccc
Confidence 4443 2344443
No 410
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=22.66 E-value=88 Score=32.05 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=52.8
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcc-------------------------------
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA------------------------------- 259 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~------------------------------- 259 (288)
+.|+.+..+.++....+|+.+...|+ . .. .++++.-+|=|+++.
T Consensus 466 ~~gi~h~vLnak~~q~Ea~iia~Ag~-~-G~---VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (896)
T PRK13104 466 KENIKHQVLNAKFHEKEAQIIAEAGR-P-GA---VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKR 540 (896)
T ss_pred HcCCCeEeecCCCChHHHHHHHhCCC-C-Cc---EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhh
Confidence 46899999999999999999999998 3 22 455667777775443
Q ss_pred -------ccceEEEeCCCCChhhhhhhhhhh
Q psy10684 260 -------TADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 260 -------~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.=+||.-+.+=+--++.|.-+||
T Consensus 541 ~~~V~~~GGL~VIgTerhesrRID~QLrGRa 571 (896)
T PRK13104 541 HDEVIAAGGLRIIGSERHESRRIDNQLRGRA 571 (896)
T ss_pred hhHHHHcCCCEEEeeccCchHHHHHHhcccc
Confidence 334788888888888888999998
No 411
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=22.66 E-value=5.9e+02 Score=23.20 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=41.4
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecc----hHHHHHHHHHHhhcCcEEEEeeCC---CCHHHHHHHHHhhcC
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQM----TRMLDILEDYCYWRGFKYCRLDGQ---TAHEDRQRQINDFNM 122 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~----~~~~~~l~~~l~~~~~~~~~~~G~---~~~~~R~~~i~~F~~ 122 (288)
...+.+..+-+.++.+ ..+|++|.+.. ...++.+...|+..|+.+..++|- -+.+.-.+..+.++.
T Consensus 14 ~G~g~~~~l~~~~~~~--g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~ 86 (383)
T PRK09860 14 IGADSLTDAMNMMADY--GFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKE 86 (383)
T ss_pred ECcCHHHHHHHHHHhc--CCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHH
Confidence 3445566665655542 12577766542 224677888888888888888774 344556667777763
No 412
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=22.48 E-value=7.9e+02 Score=24.60 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=59.1
Q ss_pred HHHHHHhCCCeEEEEecc-------------hHHHHHHHHHHhhcCcEEEEeeCC--------------------CCHHH
Q psy10684 66 LLPKLKAQESRVLIFSQM-------------TRMLDILEDYCYWRGFKYCRLDGQ--------------------TAHED 112 (288)
Q Consensus 66 ll~~~~~~~~kviIFs~~-------------~~~~~~l~~~l~~~~~~~~~~~G~--------------------~~~~~ 112 (288)
.++++..++.+++.++.- +......-+.|+..|++...++|. .++++
T Consensus 416 ~~~~~a~~G~~~l~va~~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~Ped 495 (679)
T PRK01122 416 AVDEVARKGGTPLVVAEDNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPED 495 (679)
T ss_pred HHHHHHhCCCcEEEEEECCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHH
Confidence 344445566677666532 333444556788889988887766 66778
Q ss_pred HHHHHHhhcCCCCCeeEEEEec---------ccccc------ccccc-ccceeEEecCCCCcchhhhhhHHHHH
Q psy10684 113 RQRQINDFNMEGSDIFIFMLST---------RAGGL------GINLA-TADVVVLYDSDWNPQMDLQAMVREAK 170 (288)
Q Consensus 113 R~~~i~~F~~~~~~~~vll~s~---------~~~~~------Glnl~-~a~~vi~~d~~wnp~~~~Qa~~R~~R 170 (288)
+.+.+++++ ..+. .| .+.- ..+-. |-+.. .+..+|+.|.....-.+.-.+||.-.
T Consensus 496 K~~iV~~lQ-~~G~-~V-aMtGDGvNDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~~s~Iv~av~~GR~~~ 566 (679)
T PRK01122 496 KLALIRQEQ-AEGR-LV-AMTGDGTNDAPALAQADVGVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVEIGKQLL 566 (679)
T ss_pred HHHHHHHHH-HcCC-eE-EEECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHH
Confidence 899999998 3332 22 2221 12333 33333 67778888876444444444444433
No 413
>KOG4150|consensus
Probab=22.27 E-value=1.3e+02 Score=29.30 Aligned_cols=65 Identities=23% Similarity=0.199 Sum_probs=53.2
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
...+.|+-..++|+++-.+.- . +--.-++++.|-.+|+++-.-+.|+.+.-+..-++-.|-.+||
T Consensus 560 i~SYRGGY~A~DRRKIE~~~F--~-G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRA 624 (1034)
T KOG4150|consen 560 ITSYRGGYIAEDRRKIESDLF--G-GKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRA 624 (1034)
T ss_pred HHhhcCccchhhHHHHHHHhh--C-CeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccc
Confidence 445778888888877665543 1 2223578999999999999999999999999999999999999
No 414
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=21.70 E-value=41 Score=14.16 Aligned_cols=7 Identities=29% Similarity=0.909 Sum_probs=4.9
Q ss_pred CCCChhh
Q psy10684 269 SDWNPQM 275 (288)
Q Consensus 269 ~~wnp~~ 275 (288)
|.|.|.+
T Consensus 3 pfw~ppi 9 (12)
T PF08248_consen 3 PFWPPPI 9 (12)
T ss_pred ccCCCCc
Confidence 6787765
No 415
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=21.69 E-value=5.8e+02 Score=23.21 Aligned_cols=66 Identities=15% Similarity=0.058 Sum_probs=52.9
Q ss_pred cCchHHHHHHHHHHHHhCC-----CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQE-----SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~-----~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|.+....+|....+++ ...||-+..-.+.-.++-.....|+++..+-.......+...++.|.
T Consensus 87 GS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~G 157 (368)
T PLN02556 87 SSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAFG 157 (368)
T ss_pred cchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcC
Confidence 6889999888888766654 35677777888888899999999999888876666677788888885
No 416
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=21.61 E-value=3.5e+02 Score=25.05 Aligned_cols=86 Identities=14% Similarity=0.044 Sum_probs=53.7
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCccccccCchHHHHHHHHHHH--HhCCCeEEEEecchHHHHHHHHHHhhcCcEEE
Q psy10684 25 LMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKL--KAQESRVLIFSQMTRMLDILEDYCYWRGFKYC 102 (288)
Q Consensus 25 l~~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~--~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~ 102 (288)
|.-|+|+.|.-||+-..... + ..+...+...|... ...+.+|+|........-.+.-.+...|..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~e--------l---~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~v 73 (452)
T PRK07445 5 LELLKQLSNQDWLIGYNSQR--------F---YQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVF 73 (452)
T ss_pred HHHHHHhccCceeeecChHH--------H---HHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEE
Confidence 44578888888877432111 1 12334444455443 13467888887655443344445556799999
Q ss_pred EeeCCCCHHHHHHHHHhhc
Q psy10684 103 RLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 103 ~~~G~~~~~~R~~~i~~F~ 121 (288)
.++...+.++...+++...
T Consensus 74 pl~~~~~~~~~~~~~~~~~ 92 (452)
T PRK07445 74 LANPHWGQQEWQQVLNLVQ 92 (452)
T ss_pred eeccCCCHHHHHHHHHhcC
Confidence 9999999888888887654
No 417
>PRK06756 flavodoxin; Provisional
Probab=21.53 E-value=3.7e+02 Score=20.41 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEEec----c---hHHHHHHHHHHhhcCcEE----EEeeCCCCHHHHH
Q psy10684 60 MVVLDKLLPKLKAQESRVLIFSQ----M---TRMLDILEDYCYWRGFKY----CRLDGQTAHEDRQ 114 (288)
Q Consensus 60 ~~~l~~ll~~~~~~~~kviIFs~----~---~~~~~~l~~~l~~~~~~~----~~~~G~~~~~~R~ 114 (288)
+..+++.+....-++.++.+|.. + ...++.+.+.|...|+.. +.+++..+.++..
T Consensus 69 ~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p~~~d~~ 134 (148)
T PRK06756 69 FLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELTPEDEDVE 134 (148)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecCCCHHHHH
Confidence 44444444333335789999976 3 366888888998888654 4567777655543
No 418
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=21.35 E-value=2.7e+02 Score=21.62 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=43.7
Q ss_pred eEEEEecchHHHHHHHHHHhhc-----CcEEEEeeCC-CCHHHHHHHHHhhcC-------------------CCCCeeEE
Q psy10684 76 RVLIFSQMTRMLDILEDYCYWR-----GFKYCRLDGQ-TAHEDRQRQINDFNM-------------------EGSDIFIF 130 (288)
Q Consensus 76 kviIFs~~~~~~~~l~~~l~~~-----~~~~~~~~G~-~~~~~R~~~i~~F~~-------------------~~~~~~vl 130 (288)
|++|-|--+...++|-..++-+ .-..+.++|. ...+++.+.++.||+ +..+..-+
T Consensus 16 Kilvt~lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPl 95 (149)
T PF10787_consen 16 KILVTSLPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPL 95 (149)
T ss_pred HHheecCcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCE
Confidence 6667775667777777776554 2245566665 466889999999981 11112345
Q ss_pred EEecccccccccc
Q psy10684 131 MLSTRAGGLGINL 143 (288)
Q Consensus 131 l~s~~~~~~Glnl 143 (288)
++.++.|.+-+.+
T Consensus 96 vI~tKkGK~dv~f 108 (149)
T PF10787_consen 96 VIDTKKGKKDVTF 108 (149)
T ss_pred EEEeccCcceeEE
Confidence 7777777666554
No 419
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=21.29 E-value=2.9e+02 Score=19.12 Aligned_cols=60 Identities=12% Similarity=0.029 Sum_probs=37.1
Q ss_pred hCCC-eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 72 AQES-RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 72 ~~~~-kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
..+- .+..+++..+.+ ..+....+..+.++..++...-.+.++..+...+.+.+++++..
T Consensus 20 ~~~~~~v~~~~~~~~~~----~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 20 RAGYEEVTTASSGEEAL----ELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp HTTEEEEEEESSHHHHH----HHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESS
T ss_pred hCCCCEEEEECCHHHHH----HHhcccCceEEEEEeeeccccccccccccccccccccEEEecCC
Confidence 3444 555555544433 34456668888888888776666666666644466777777643
No 420
>PF13514 AAA_27: AAA domain
Probab=21.18 E-value=1.9e+02 Score=30.64 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=31.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHH
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYC 94 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l 94 (288)
+..+....+++|..+.. ...||+|+.+..++++....+
T Consensus 1065 Dd~R~~~~l~~L~~ls~-~~QVI~FTch~~l~~~a~~~~ 1102 (1111)
T PF13514_consen 1065 DDERARAALELLAELSR-RRQVIYFTCHEHLVELAREVF 1102 (1111)
T ss_pred CHHHHHHHHHHHHHhcc-CCeEEEEeccHHHHHHHHHhc
Confidence 46688889999988654 479999999999999988774
No 421
>PLN02363 phosphoribosylanthranilate isomerase
Probab=21.17 E-value=3.9e+02 Score=23.00 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhC-CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHH
Q psy10684 62 VLDKLLPKLKAQ-ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDR 113 (288)
Q Consensus 62 ~l~~ll~~~~~~-~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R 113 (288)
...++.+.+... -.+|-||.+. ..+.+.+.++..++.++++||..+.+..
T Consensus 87 ~a~~I~~~l~~~~~~~VgVfv~~--~~~~I~~~~~~~~ld~VQLHG~e~~~~~ 137 (256)
T PLN02363 87 VAKEISQVAREGGAKPVGVFVDD--DANTILRAADSSDLELVQLHGNGSRAAF 137 (256)
T ss_pred HHHHHHHhccccCccEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 344444433222 3469999764 4567777888889999999998875543
No 422
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=20.87 E-value=2.8e+02 Score=23.12 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEE---eeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCR---LDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~---~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
--+.|.+++......+.++++++.-.. -+.|.+.|...|+.+.. |.-...........+.+. ..++.++++.+.
T Consensus 103 ~~e~L~~~~~~~~~~~~~vL~~rg~~~-r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~--~~~~d~i~f~S~ 179 (240)
T PRK09189 103 DGVRLAETVAAALAPTARLLYLAGRPR-APVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILG--GAPFDAVLLYSR 179 (240)
T ss_pred CHHHHHHHHHHhcCCCCcEEEeccCcc-cchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHh--cCCCCEEEEeCH
Confidence 344555665543345678888886544 48899999998865322 222112222334556665 233444444444
Q ss_pred cc
Q psy10684 136 AG 137 (288)
Q Consensus 136 ~~ 137 (288)
.+
T Consensus 180 ~~ 181 (240)
T PRK09189 180 VA 181 (240)
T ss_pred HH
Confidence 33
No 423
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.85 E-value=3.4e+02 Score=19.76 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=18.1
Q ss_pred CCCeEEEEecchHHHHHHH--HHHhhcCcEEEEeeCC
Q psy10684 73 QESRVLIFSQMTRMLDILE--DYCYWRGFKYCRLDGQ 107 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~--~~l~~~~~~~~~~~G~ 107 (288)
+++=+|++|++...-+.++ +.++.+|.+.+.+++.
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~ 79 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSG 79 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3445666665544333322 3445566666666653
No 424
>KOG0701|consensus
Probab=20.81 E-value=54 Score=35.70 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=66.9
Q ss_pred eEEEEecchHHHHHHHHHHhhc-CcEEEEeeCCCCH-----------HHHHHHHHhhcCCCCCeeEEEEecccccccccc
Q psy10684 76 RVLIFSQMTRMLDILEDYCYWR-GFKYCRLDGQTAH-----------EDRQRQINDFNMEGSDIFIFMLSTRAGGLGINL 143 (288)
Q Consensus 76 kviIFs~~~~~~~~l~~~l~~~-~~~~~~~~G~~~~-----------~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl 143 (288)
..++|+......-.+.+.+... -.....+.|.+.. -.+.+.+..|..+ .+.+ |+.+.+.-.|++.
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~--~ln~-L~~~~~~~e~~d~ 370 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFH--ELNL-LIATSVLEEGVDV 370 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhh--hhhH-HHHHHHHHhhcch
Confidence 4578888777765555555443 1222336665433 1356778888743 3333 7888899999999
Q ss_pred cccceeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 144 ATADVVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 144 ~~a~~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
..|+-|+.++.+-+-..+.|+.+|+.+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 371 PKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999999887665
No 425
>PLN02565 cysteine synthase
Probab=20.59 E-value=6e+02 Score=22.52 Aligned_cols=67 Identities=15% Similarity=0.021 Sum_probs=52.7
Q ss_pred ccCchHHHHHHHHHHHHhCC-----CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQE-----SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~-----~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|.+....++....+++ .+.||-++.-.+.-.++...+..|+++..+-.......+...++.|.
T Consensus 42 tGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~G 113 (322)
T PLN02565 42 CSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFG 113 (322)
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcC
Confidence 36789987777777665543 35678788888888899999999999998877777778888888885
No 426
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=20.58 E-value=6.6e+02 Score=23.01 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=49.3
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec-c
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST-R 135 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~-~ 135 (288)
++-...|.+.|..+ +.++.+++|+.--..+...-..|-+.|-..+....-. ..-...++.+. ...++.+-.+.. +
T Consensus 54 nPt~~~le~~la~L-e~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y--~~t~~~~~~~l-~~~gv~v~~~d~~d 129 (386)
T PF01053_consen 54 NPTVRALEQRLAAL-EGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLY--GGTYRLLEELL-PRFGVEVTFVDPTD 129 (386)
T ss_dssp -HHHHHHHHHHHHH-HT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSS--HHHHHHHHHCH-HHTTSEEEEESTTS
T ss_pred cccHHHHHHHHHHh-hcccceeeccchHHHHHHHHHhhcccCCceEecCCcc--Ccchhhhhhhh-cccCcEEEEeCchh
Confidence 44555555555543 3445666666544444333333333343333322221 11122233222 123333333322 1
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
....---+..-..+|+++.|-||..+..=+.++.++-++.
T Consensus 130 ~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~ 169 (386)
T PF01053_consen 130 LEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEH 169 (386)
T ss_dssp HHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHT
T ss_pred HHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHh
Confidence 1111111223457889999999987776666666655554
No 427
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=20.46 E-value=2e+02 Score=25.48 Aligned_cols=47 Identities=17% Similarity=-0.018 Sum_probs=33.0
Q ss_pred HHHHHHHH-HhCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 63 LDKLLPKL-KAQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 63 l~~ll~~~-~~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
|.+++... ...+..+|+||+.....-.+.-.|+..|++ ...|+|++.
T Consensus 257 l~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 257 LKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred HHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 44444432 234678999999877777777788888885 567899873
Done!