Query psy10684
Match_columns 288
No_of_seqs 300 out of 2885
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 15:59:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z5z_A Helicase of the SNF2/RA 100.0 1.1E-35 3.8E-40 257.0 11.4 169 17-195 64-240 (271)
2 3mwy_W Chromo domain-containin 100.0 8.1E-33 2.8E-37 272.1 4.6 188 3-190 491-695 (800)
3 1z3i_X Similar to RAD54-like; 100.0 5.7E-30 1.9E-34 246.4 10.3 179 17-195 345-544 (644)
4 1z63_A Helicase of the SNF2/RA 99.9 3.7E-28 1.3E-32 227.3 10.5 170 16-195 292-469 (500)
5 3hgt_A HDA1 complex subunit 3; 99.9 1.7E-27 5.8E-32 207.0 10.8 163 18-188 66-246 (328)
6 1t5i_A C_terminal domain of A 99.9 1.4E-21 4.7E-26 157.6 12.2 117 56-177 15-131 (172)
7 2hjv_A ATP-dependent RNA helic 99.9 1.5E-21 5.2E-26 155.9 9.9 118 55-177 18-135 (163)
8 2p6n_A ATP-dependent RNA helic 99.8 1.1E-21 3.7E-26 160.8 8.0 141 31-177 11-154 (191)
9 2jgn_A DBX, DDX3, ATP-dependen 99.8 1.5E-21 5.1E-26 159.2 6.0 119 55-177 28-146 (185)
10 1fuk_A Eukaryotic initiation f 99.8 1.2E-20 4.2E-25 150.9 10.4 115 58-177 16-130 (165)
11 1wp9_A ATP-dependent RNA helic 99.8 1.8E-20 6.1E-25 172.9 7.0 134 55-192 340-488 (494)
12 3eaq_A Heat resistant RNA depe 99.8 7.5E-20 2.6E-24 152.3 9.9 118 55-177 14-131 (212)
13 2rb4_A ATP-dependent RNA helic 99.8 8.5E-20 2.9E-24 147.4 8.7 115 58-177 20-140 (175)
14 2yjt_D ATP-dependent RNA helic 99.7 3E-21 1E-25 155.3 0.0 120 57-181 15-134 (170)
15 3dmq_A RNA polymerase-associat 99.8 2.6E-19 8.8E-24 179.1 8.0 122 53-177 484-606 (968)
16 3i32_A Heat resistant RNA depe 99.8 2.1E-18 7E-23 150.7 10.4 117 56-177 12-128 (300)
17 4a2p_A RIG-I, retinoic acid in 99.7 4E-18 1.4E-22 160.6 7.8 113 56-171 370-496 (556)
18 2db3_A ATP-dependent RNA helic 99.7 8.9E-18 3E-22 154.4 9.4 116 56-177 285-400 (434)
19 1z5z_A Helicase of the SNF2/RA 99.7 2.2E-18 7.4E-23 148.6 2.0 100 183-283 103-206 (271)
20 3tbk_A RIG-I helicase domain; 99.7 1E-17 3.4E-22 157.7 5.8 113 56-171 369-495 (555)
21 1xti_A Probable ATP-dependent 99.7 5.5E-17 1.9E-21 146.3 8.9 117 56-177 234-350 (391)
22 2j0s_A ATP-dependent RNA helic 99.7 6.4E-17 2.2E-21 147.0 9.3 115 58-177 262-376 (410)
23 4a2q_A RIG-I, retinoic acid in 99.7 3.4E-17 1.2E-21 161.1 8.0 117 56-176 611-741 (797)
24 4a2w_A RIG-I, retinoic acid in 99.7 5.4E-17 1.8E-21 162.0 7.9 113 56-171 611-737 (936)
25 3eiq_A Eukaryotic initiation f 99.7 1.5E-16 5.1E-21 144.5 9.2 116 57-177 265-380 (414)
26 1s2m_A Putative ATP-dependent 99.7 1.5E-16 5.1E-21 144.0 9.0 117 56-177 242-358 (400)
27 2i4i_A ATP-dependent RNA helic 99.6 1.4E-16 4.7E-21 145.0 7.5 118 56-177 259-376 (417)
28 1hv8_A Putative ATP-dependent 99.6 1.4E-16 4.8E-21 142.1 7.2 116 56-177 223-338 (367)
29 3pey_A ATP-dependent RNA helic 99.6 9.5E-16 3.2E-20 138.0 10.3 115 58-177 229-349 (395)
30 2fwr_A DNA repair protein RAD2 99.6 5.1E-17 1.7E-21 150.6 1.9 112 56-177 333-445 (472)
31 4gl2_A Interferon-induced heli 99.6 1.2E-16 4.2E-21 154.9 4.6 114 56-172 379-509 (699)
32 3mwy_W Chromo domain-containin 99.6 6.1E-17 2.1E-21 159.3 2.2 103 181-283 561-666 (800)
33 3fht_A ATP-dependent RNA helic 99.6 1.8E-15 6E-20 137.2 10.4 115 58-177 252-372 (412)
34 2ykg_A Probable ATP-dependent 99.6 1.4E-15 4.7E-20 147.5 7.4 113 56-171 378-504 (696)
35 1oyw_A RECQ helicase, ATP-depe 99.6 3.8E-15 1.3E-19 139.9 10.1 117 56-177 220-336 (523)
36 3sqw_A ATP-dependent RNA helic 99.6 5.1E-15 1.7E-19 140.7 10.2 103 72-177 286-391 (579)
37 1fuu_A Yeast initiation factor 99.6 2.2E-16 7.6E-21 142.3 0.0 118 59-181 246-363 (394)
38 1z3i_X Similar to RAD54-like; 99.6 5.1E-16 1.7E-20 149.3 2.4 92 192-283 416-510 (644)
39 3i5x_A ATP-dependent RNA helic 99.6 8E-15 2.7E-19 138.8 10.2 103 72-177 337-442 (563)
40 2v1x_A ATP-dependent DNA helic 99.5 1.4E-14 4.7E-19 137.8 10.2 116 59-177 250-367 (591)
41 2z0m_A 337AA long hypothetical 99.5 4.3E-15 1.5E-19 130.9 5.8 99 72-177 218-316 (337)
42 2oca_A DAR protein, ATP-depend 99.5 3.9E-14 1.3E-18 132.5 10.9 114 58-175 331-446 (510)
43 1tf5_A Preprotein translocase 99.5 2E-14 6.7E-19 138.8 8.0 117 56-177 414-538 (844)
44 3h1t_A Type I site-specific re 99.5 4.9E-14 1.7E-18 134.2 8.0 100 73-173 438-545 (590)
45 3fmp_B ATP-dependent RNA helic 99.5 4.6E-15 1.6E-19 137.8 0.0 120 57-181 318-443 (479)
46 3jux_A Protein translocase sub 99.5 7.8E-14 2.7E-18 132.3 7.6 117 56-177 456-580 (822)
47 3oiy_A Reverse gyrase helicase 99.5 1E-13 3.6E-18 126.2 8.2 108 54-173 235-350 (414)
48 2fsf_A Preprotein translocase 99.4 2.4E-13 8.1E-18 131.1 9.1 117 56-177 423-576 (853)
49 1c4o_A DNA nucleotide excision 99.4 5.3E-13 1.8E-17 128.5 10.6 113 57-172 422-539 (664)
50 2d7d_A Uvrabc system protein B 99.4 6.7E-13 2.3E-17 127.7 10.5 116 57-176 428-548 (661)
51 1z63_A Helicase of the SNF2/RA 99.4 4.5E-14 1.5E-18 131.7 1.1 98 185-283 334-435 (500)
52 1nkt_A Preprotein translocase 99.4 8E-13 2.7E-17 127.8 9.7 117 56-177 442-610 (922)
53 3fho_A ATP-dependent RNA helic 99.4 4.2E-14 1.5E-18 132.3 0.1 116 57-177 342-463 (508)
54 3hgt_A HDA1 complex subunit 3; 99.3 1.4E-12 4.9E-17 113.4 4.5 96 180-283 113-217 (328)
55 2eyq_A TRCF, transcription-rep 99.3 3.8E-12 1.3E-16 129.2 7.8 116 57-176 796-914 (1151)
56 3rc3_A ATP-dependent RNA helic 99.3 5.7E-12 2E-16 121.0 7.9 98 75-174 321-432 (677)
57 1wp9_A ATP-dependent RNA helic 99.3 1.7E-11 5.8E-16 112.6 10.2 69 212-283 384-460 (494)
58 2xgj_A ATP-dependent RNA helic 99.2 7.1E-12 2.4E-16 125.6 7.1 109 63-174 331-487 (1010)
59 1yks_A Genome polyprotein [con 99.2 4.6E-12 1.6E-16 116.4 3.7 98 71-176 174-291 (440)
60 2va8_A SSO2462, SKI2-type heli 99.2 3E-11 1E-15 117.5 8.8 108 64-174 242-396 (715)
61 1gm5_A RECG; helicase, replica 99.2 4.9E-12 1.7E-16 123.3 2.8 119 56-177 560-690 (780)
62 2jlq_A Serine protease subunit 99.2 2.3E-11 7.9E-16 112.1 7.1 94 72-173 186-299 (451)
63 2xau_A PRE-mRNA-splicing facto 99.2 2.9E-11 1E-15 118.2 7.9 102 73-176 302-435 (773)
64 2z83_A Helicase/nucleoside tri 99.2 6.6E-12 2.3E-16 116.0 2.6 97 72-176 188-305 (459)
65 2wv9_A Flavivirin protease NS2 99.2 1.8E-11 6.2E-16 117.7 5.4 98 71-176 407-525 (673)
66 2p6r_A Afuhel308 helicase; pro 99.1 2.9E-11 1E-15 117.3 6.2 106 66-174 234-376 (702)
67 3l9o_A ATP-dependent RNA helic 99.1 2.6E-11 8.9E-16 122.6 5.9 112 60-174 426-585 (1108)
68 2zj8_A DNA helicase, putative 99.1 4.7E-11 1.6E-15 116.2 6.6 105 67-174 230-375 (720)
69 2whx_A Serine protease/ntpase/ 99.1 3E-11 1E-15 115.3 5.0 94 72-173 353-466 (618)
70 1gku_B Reverse gyrase, TOP-RG; 99.1 1.7E-11 5.9E-16 123.6 1.1 89 56-155 260-352 (1054)
71 4ddu_A Reverse gyrase; topoiso 99.1 1.1E-10 3.8E-15 118.0 6.9 89 56-156 294-388 (1104)
72 2v6i_A RNA helicase; membrane, 99.1 1E-10 3.5E-15 107.1 5.5 95 72-174 169-280 (431)
73 4a4z_A Antiviral helicase SKI2 99.0 4E-10 1.4E-14 112.9 7.8 111 58-174 322-480 (997)
74 3o8b_A HCV NS3 protease/helica 99.0 1.8E-10 6.2E-15 109.8 4.6 92 73-176 395-507 (666)
75 4a2p_A RIG-I, retinoic acid in 99.0 9.1E-10 3.1E-14 103.4 8.0 69 213-283 426-494 (556)
76 4a2q_A RIG-I, retinoic acid in 98.9 2.7E-09 9.2E-14 105.0 9.2 69 213-283 667-735 (797)
77 2fwr_A DNA repair protein RAD2 98.8 8.9E-09 3.1E-13 95.1 7.2 66 215-283 370-435 (472)
78 1t5i_A C_terminal domain of A 98.7 6.9E-09 2.4E-13 82.9 4.8 68 213-283 55-122 (172)
79 2hjv_A ATP-dependent RNA helic 98.7 7.9E-09 2.7E-13 81.7 5.1 68 213-283 59-126 (163)
80 3dmq_A RNA polymerase-associat 98.7 7.3E-09 2.5E-13 103.7 4.9 70 212-283 527-597 (968)
81 2jgn_A DBX, DDX3, ATP-dependen 98.7 7.9E-09 2.7E-13 83.6 3.4 68 213-283 70-137 (185)
82 1fuk_A Eukaryotic initiation f 98.7 2E-08 6.9E-13 79.5 5.4 68 213-283 54-121 (165)
83 2p6n_A ATP-dependent RNA helic 98.7 9.8E-09 3.4E-13 83.5 3.2 68 213-283 78-145 (191)
84 3tbk_A RIG-I helicase domain; 98.6 7.8E-09 2.7E-13 96.8 2.2 69 213-283 425-493 (555)
85 1xti_A Probable ATP-dependent 98.6 4E-07 1.4E-11 81.4 12.4 68 213-283 274-341 (391)
86 2yjt_D ATP-dependent RNA helic 98.0 5.7E-09 2E-13 83.1 0.0 69 212-283 53-121 (170)
87 2ykg_A Probable ATP-dependent 98.5 1.7E-07 5.8E-12 90.6 9.0 68 214-283 427-502 (696)
88 4a2w_A RIG-I, retinoic acid in 98.5 2.8E-08 9.4E-13 99.3 3.4 69 213-283 667-735 (936)
89 2eyq_A TRCF, transcription-rep 98.5 1.7E-06 5.7E-11 88.1 16.1 220 56-283 634-906 (1151)
90 1gm5_A RECG; helicase, replica 98.5 1.1E-06 3.8E-11 85.7 13.8 218 56-283 399-681 (780)
91 1hv8_A Putative ATP-dependent 98.5 6.4E-07 2.2E-11 79.1 10.9 68 213-283 262-329 (367)
92 3eaq_A Heat resistant RNA depe 98.4 1.6E-07 5.6E-12 77.4 5.2 68 213-283 55-122 (212)
93 2rb4_A ATP-dependent RNA helic 98.4 1.4E-07 4.7E-12 75.3 4.4 68 213-283 58-131 (175)
94 2db3_A ATP-dependent RNA helic 98.4 2.2E-06 7.6E-11 78.3 12.1 69 212-283 323-391 (434)
95 4gl2_A Interferon-induced heli 98.4 1.4E-07 4.9E-12 91.2 4.2 68 213-283 430-505 (699)
96 1fuu_A Yeast initiation factor 98.4 6.7E-07 2.3E-11 80.0 8.0 70 211-283 281-350 (394)
97 2v1x_A ATP-dependent DNA helic 98.3 5.6E-06 1.9E-10 78.6 13.0 222 54-283 67-358 (591)
98 3oiy_A Reverse gyrase helicase 98.3 1E-05 3.6E-10 73.0 13.9 219 55-283 45-345 (414)
99 4f92_B U5 small nuclear ribonu 98.3 7E-07 2.4E-11 93.9 6.2 98 74-174 317-461 (1724)
100 4f92_B U5 small nuclear ribonu 98.3 9E-07 3.1E-11 93.0 6.6 100 72-174 1153-1296(1724)
101 2w00_A HSDR, R.ECOR124I; ATP-b 98.3 2.2E-06 7.4E-11 86.0 9.0 97 74-174 537-695 (1038)
102 1oyw_A RECQ helicase, ATP-depe 98.2 6.8E-06 2.3E-10 76.9 11.0 221 55-283 49-327 (523)
103 2oca_A DAR protein, ATP-depend 98.2 3.6E-07 1.2E-11 85.1 2.1 69 213-283 371-439 (510)
104 2j0s_A ATP-dependent RNA helic 98.1 1.6E-06 5.5E-11 78.1 4.0 69 212-283 299-367 (410)
105 3eiq_A Eukaryotic initiation f 98.1 1.5E-06 5.3E-11 78.2 3.6 69 212-283 303-371 (414)
106 1s2m_A Putative ATP-dependent 98.1 2.2E-06 7.5E-11 76.9 4.3 68 213-283 282-349 (400)
107 3i32_A Heat resistant RNA depe 98.1 2.6E-06 9E-11 73.9 4.4 68 213-283 52-119 (300)
108 3pey_A ATP-dependent RNA helic 98.1 2.9E-06 9.9E-11 75.7 4.8 69 212-283 266-340 (395)
109 2z0m_A 337AA long hypothetical 98.1 2.3E-06 7.8E-11 74.7 4.0 65 216-283 243-307 (337)
110 3h1t_A Type I site-specific re 98.0 4.3E-06 1.5E-10 79.3 4.9 68 216-284 474-541 (590)
111 2i4i_A ATP-dependent RNA helic 97.8 8.3E-06 2.8E-10 73.5 2.8 69 212-283 299-367 (417)
112 3fht_A ATP-dependent RNA helic 97.7 1.9E-05 6.6E-10 70.8 4.5 68 213-283 290-363 (412)
113 3sqw_A ATP-dependent RNA helic 97.6 3.8E-05 1.3E-09 72.6 5.0 68 213-283 315-382 (579)
114 3i5x_A ATP-dependent RNA helic 97.6 4.2E-05 1.4E-09 71.9 5.0 68 213-283 366-433 (563)
115 3fmp_B ATP-dependent RNA helic 97.2 6E-05 2.1E-09 69.4 0.0 69 212-283 356-430 (479)
116 4ddu_A Reverse gyrase; topoiso 97.1 0.0044 1.5E-07 62.8 13.3 98 54-153 101-204 (1104)
117 3fho_A ATP-dependent RNA helic 97.1 0.00016 5.5E-09 67.2 2.1 69 212-283 380-454 (508)
118 2ipc_A Preprotein translocase 97.0 0.0011 3.7E-08 64.8 7.0 117 56-177 425-691 (997)
119 3rc3_A ATP-dependent RNA helic 97.0 0.0005 1.7E-08 66.1 4.7 69 213-283 344-426 (677)
120 1gku_B Reverse gyrase, TOP-RG; 96.9 0.0097 3.3E-07 60.1 13.1 78 55-136 80-165 (1054)
121 2xgj_A ATP-dependent RNA helic 96.7 0.001 3.5E-08 66.8 4.2 65 216-283 409-481 (1010)
122 1c4o_A DNA nucleotide excision 96.5 0.00088 3E-08 64.4 2.3 69 212-283 462-535 (664)
123 2vl7_A XPD; helicase, unknown 96.4 0.012 4.1E-07 55.0 9.2 101 61-169 370-476 (540)
124 2p6r_A Afuhel308 helicase; pro 96.2 0.0029 9.8E-08 61.1 4.0 67 214-283 297-370 (702)
125 2va8_A SSO2462, SKI2-type heli 96.2 0.003 1E-07 61.1 4.1 66 215-283 314-390 (715)
126 2d7d_A Uvrabc system protein B 96.2 0.0016 5.6E-08 62.4 2.1 69 212-283 468-541 (661)
127 2wv9_A Flavivirin protease NS2 96.0 0.14 4.7E-06 49.1 14.5 63 213-283 434-516 (673)
128 2z83_A Helicase/nucleoside tri 96.0 0.073 2.5E-06 48.5 12.1 63 213-283 214-296 (459)
129 2zj8_A DNA helicase, putative 95.9 0.0039 1.3E-07 60.4 3.5 66 215-283 296-369 (720)
130 3l9o_A ATP-dependent RNA helic 95.3 0.0058 2E-07 62.0 2.0 65 216-283 507-579 (1108)
131 2v6i_A RNA helicase; membrane, 94.9 0.33 1.1E-05 43.8 12.5 63 213-283 195-274 (431)
132 2xau_A PRE-mRNA-splicing facto 94.2 0.018 6.3E-07 56.1 2.4 70 212-283 337-428 (773)
133 1yks_A Genome polyprotein [con 94.1 0.023 8E-07 51.6 2.9 63 213-283 201-282 (440)
134 4a4z_A Antiviral helicase SKI2 93.0 0.05 1.7E-06 54.6 3.2 65 215-283 401-474 (997)
135 2jlq_A Serine protease subunit 92.4 0.1 3.4E-06 47.5 4.2 63 213-283 212-294 (451)
136 1tf5_A Preprotein translocase 90.0 0.27 9.2E-06 48.0 4.6 68 211-283 454-529 (844)
137 4a15_A XPD helicase, ATP-depen 89.1 1.4 4.7E-05 41.8 8.8 91 62-159 435-530 (620)
138 3jux_A Protein translocase sub 87.5 0.56 1.9E-05 45.2 4.8 68 211-283 496-571 (822)
139 2whx_A Serine protease/ntpase/ 86.7 0.3 1E-05 46.3 2.6 63 213-283 379-461 (618)
140 2fsf_A Preprotein translocase 84.7 0.63 2.1E-05 45.4 3.7 68 211-283 463-567 (853)
141 2l82_A Designed protein OR32; 83.7 4.9 0.00017 28.5 7.0 45 77-121 5-49 (162)
142 3crv_A XPD/RAD3 related DNA he 78.8 21 0.00072 32.9 11.8 97 61-168 379-484 (551)
143 3ipz_A Monothiol glutaredoxin- 78.6 14 0.00046 25.9 8.2 66 64-132 8-79 (109)
144 2yan_A Glutaredoxin-3; oxidore 78.2 12 0.00041 25.9 7.8 65 64-131 7-77 (105)
145 3g5j_A Putative ATP/GTP bindin 77.7 3.5 0.00012 29.9 5.0 48 61-109 76-125 (134)
146 1nkt_A Preprotein translocase 77.0 1.4 4.9E-05 43.2 3.2 68 211-283 482-601 (922)
147 3zyw_A Glutaredoxin-3; metal b 76.3 15 0.00051 25.9 7.9 66 64-132 6-77 (111)
148 3gx8_A Monothiol glutaredoxin- 74.1 22 0.00074 25.5 9.5 66 64-132 6-80 (121)
149 3i42_A Response regulator rece 72.8 17 0.00057 25.3 7.6 98 72-173 25-124 (127)
150 2lqo_A Putative glutaredoxin R 72.6 12 0.00041 25.5 6.3 57 75-132 4-61 (92)
151 3o8b_A HCV NS3 protease/helica 69.0 2.5 8.5E-05 40.3 2.7 61 212-283 419-500 (666)
152 2wci_A Glutaredoxin-4; redox-a 68.4 20 0.00069 26.4 7.2 66 64-132 25-96 (135)
153 3gk5_A Uncharacterized rhodane 68.3 4.1 0.00014 28.6 3.2 38 72-109 53-90 (108)
154 2w00_A HSDR, R.ECOR124I; ATP-b 67.6 4.3 0.00015 40.9 4.2 54 227-284 637-690 (1038)
155 1wik_A Thioredoxin-like protei 67.1 20 0.0007 24.9 6.8 47 74-120 14-66 (109)
156 2wem_A Glutaredoxin-related pr 65.9 33 0.0011 24.4 8.7 56 75-132 20-82 (118)
157 2oxc_A Probable ATP-dependent 64.6 43 0.0015 26.4 9.2 74 55-135 70-151 (230)
158 3iwh_A Rhodanese-like domain p 64.6 5.5 0.00019 27.9 3.2 37 72-108 54-90 (103)
159 3sxu_A DNA polymerase III subu 64.2 43 0.0015 25.1 9.4 41 57-97 22-62 (150)
160 3foj_A Uncharacterized protein 63.5 7.3 0.00025 26.7 3.7 37 72-108 54-90 (100)
161 2jtq_A Phage shock protein E; 62.6 13 0.00045 24.4 4.8 46 63-108 29-75 (85)
162 3nhm_A Response regulator; pro 61.8 37 0.0013 23.6 10.1 97 72-172 25-123 (133)
163 3eme_A Rhodanese-like domain p 60.7 7.4 0.00025 26.8 3.3 37 72-108 54-90 (103)
164 1t6n_A Probable ATP-dependent 60.6 57 0.002 25.3 10.3 91 56-151 61-164 (220)
165 3eqz_A Response regulator; str 60.5 38 0.0013 23.5 7.5 93 74-171 27-125 (135)
166 3kto_A Response regulator rece 59.9 42 0.0014 23.6 7.6 95 74-172 30-127 (136)
167 2wul_A Glutaredoxin related pr 58.7 47 0.0016 23.8 8.6 46 75-121 20-72 (118)
168 3hix_A ALR3790 protein; rhodan 57.6 11 0.00039 26.1 3.9 37 72-108 50-87 (106)
169 1qkk_A DCTD, C4-dicarboxylate 56.9 52 0.0018 23.7 8.6 98 72-173 25-123 (155)
170 1t1v_A SH3BGRL3, SH3 domain-bi 56.3 41 0.0014 22.4 6.6 46 76-121 3-55 (93)
171 3fe2_A Probable ATP-dependent 55.9 75 0.0026 25.2 10.4 64 55-118 75-150 (242)
172 1wv9_A Rhodanese homolog TT165 55.9 9.7 0.00033 25.7 3.2 35 75-109 54-88 (94)
173 3ber_A Probable ATP-dependent 55.6 79 0.0027 25.4 10.7 91 55-151 89-192 (249)
174 3iuy_A Probable ATP-dependent 55.2 55 0.0019 25.7 8.2 91 55-151 66-173 (228)
175 2pl3_A Probable ATP-dependent 54.6 77 0.0026 24.9 9.3 73 56-135 72-155 (236)
176 3a10_A Response regulator; pho 53.7 48 0.0016 22.3 9.2 91 73-168 24-114 (116)
177 2fsx_A RV0390, COG0607: rhodan 52.7 18 0.00063 26.7 4.6 38 72-109 78-116 (148)
178 1u6t_A SH3 domain-binding glut 51.7 32 0.0011 24.9 5.5 35 87-121 19-53 (121)
179 2rdm_A Response regulator rece 50.3 59 0.002 22.4 7.8 93 72-173 27-125 (132)
180 4b3f_X DNA-binding protein smu 50.3 32 0.0011 32.4 6.9 50 56-105 215-264 (646)
181 3flh_A Uncharacterized protein 49.9 10 0.00034 27.2 2.6 36 73-108 70-107 (124)
182 3hdg_A Uncharacterized protein 49.5 63 0.0022 22.5 7.5 98 73-174 30-128 (137)
183 1gmx_A GLPE protein; transfera 49.3 22 0.00075 24.5 4.3 46 63-109 48-94 (108)
184 3nhv_A BH2092 protein; alpha-b 49.3 16 0.00054 27.1 3.7 36 73-108 71-108 (144)
185 2hhg_A Hypothetical protein RP 47.0 15 0.0005 26.8 3.2 37 72-108 84-121 (139)
186 2ct6_A SH3 domain-binding glut 47.0 64 0.0022 22.4 6.6 46 75-120 8-60 (111)
187 3qmx_A Glutaredoxin A, glutare 46.1 67 0.0023 21.8 7.3 47 74-120 15-62 (99)
188 2k0z_A Uncharacterized protein 45.9 21 0.00071 24.9 3.7 38 72-109 54-91 (110)
189 2j48_A Two-component sensor ki 44.8 65 0.0022 21.3 7.0 59 73-135 24-84 (119)
190 3heb_A Response regulator rece 44.3 84 0.0029 22.4 7.5 97 76-172 32-136 (152)
191 3jte_A Response regulator rece 44.2 80 0.0027 22.1 8.6 97 72-170 25-122 (143)
192 3grc_A Sensor protein, kinase; 43.8 80 0.0027 22.0 9.0 97 72-172 28-128 (140)
193 1vee_A Proline-rich protein fa 43.5 29 0.001 25.1 4.4 38 72-109 72-110 (134)
194 3ilm_A ALR3790 protein; rhodan 42.8 22 0.00074 26.2 3.5 37 72-108 54-91 (141)
195 1tq1_A AT5G66040, senescence-a 42.5 17 0.00057 26.3 2.8 38 72-109 80-118 (129)
196 2gk6_A Regulator of nonsense t 42.4 64 0.0022 30.2 7.5 51 56-106 205-256 (624)
197 2qxy_A Response regulator; reg 41.8 78 0.0027 22.1 6.6 91 73-170 27-120 (142)
198 1qxn_A SUD, sulfide dehydrogen 41.6 17 0.00058 26.6 2.8 37 72-108 80-117 (137)
199 1qde_A EIF4A, translation init 40.6 80 0.0027 24.5 7.0 58 56-113 61-125 (224)
200 3lte_A Response regulator; str 40.4 87 0.003 21.5 8.0 45 73-121 29-73 (132)
201 2zay_A Response regulator rece 39.7 96 0.0033 21.8 7.1 100 62-170 23-127 (147)
202 3eul_A Possible nitrate/nitrit 39.2 98 0.0033 22.0 6.8 75 95-169 58-133 (152)
203 1j0a_A 1-aminocyclopropane-1-c 38.8 1.2E+02 0.0042 25.5 8.2 66 56-121 51-119 (325)
204 3cg4_A Response regulator rece 38.8 97 0.0033 21.5 12.3 99 73-175 30-131 (142)
205 3d1p_A Putative thiosulfate su 38.4 21 0.00073 25.9 2.9 36 73-108 90-126 (139)
206 3kcn_A Adenylate cyclase homol 38.1 1.1E+02 0.0036 21.8 9.0 96 72-172 25-124 (151)
207 2qr3_A Two-component system re 38.1 98 0.0034 21.4 7.7 94 73-170 26-125 (140)
208 3dwg_A Cysteine synthase B; su 37.7 1.3E+02 0.0043 25.5 8.1 66 56-121 50-119 (325)
209 2rkb_A Serine dehydratase-like 37.5 1.3E+02 0.0044 25.2 8.1 66 56-121 35-100 (318)
210 3ly5_A ATP-dependent RNA helic 37.5 1.6E+02 0.0055 23.7 10.4 61 56-116 101-172 (262)
211 4dad_A Putative pilus assembly 37.0 1.1E+02 0.0037 21.5 8.0 94 75-171 46-141 (146)
212 3tg1_B Dual specificity protei 36.6 20 0.00069 26.8 2.5 35 74-108 93-136 (158)
213 3snk_A Response regulator CHEY 35.9 39 0.0013 23.7 4.0 29 75-103 15-44 (135)
214 3lua_A Response regulator rece 35.3 89 0.003 21.8 5.9 95 73-171 28-127 (140)
215 2egu_A Cysteine synthase; O-ac 34.8 1.7E+02 0.0059 24.2 8.5 66 56-121 42-111 (308)
216 1ego_A Glutaredoxin; electron 34.7 37 0.0013 21.7 3.4 46 76-121 2-53 (85)
217 2d1f_A Threonine synthase; ami 34.0 1.8E+02 0.006 24.9 8.5 66 56-121 66-132 (360)
218 2q3b_A Cysteine synthase A; py 33.9 1.6E+02 0.0056 24.5 8.2 66 56-121 44-113 (313)
219 3hv2_A Response regulator/HD d 33.6 1.3E+02 0.0044 21.4 7.6 96 72-171 36-133 (153)
220 3aey_A Threonine synthase; PLP 33.2 1.5E+02 0.0052 25.2 8.0 67 55-121 57-124 (351)
221 2v03_A Cysteine synthase B; py 32.9 1.8E+02 0.0061 24.2 8.2 66 56-121 38-107 (303)
222 3dmn_A Putative DNA helicase; 32.7 1.6E+02 0.0054 22.1 9.7 77 62-156 49-125 (174)
223 2qv0_A Protein MRKE; structura 32.6 1.3E+02 0.0043 21.0 7.1 77 95-172 52-128 (143)
224 2wjy_A Regulator of nonsense t 32.5 1E+02 0.0035 29.9 7.4 51 56-106 381-432 (800)
225 3hdv_A Response regulator; PSI 32.5 1.2E+02 0.0042 20.8 8.8 95 73-171 30-127 (136)
226 3nzn_A Glutaredoxin; structura 32.3 1.1E+02 0.0039 20.4 6.3 59 74-132 21-83 (103)
227 1ve1_A O-acetylserine sulfhydr 32.3 1.6E+02 0.0056 24.4 7.9 67 55-121 36-108 (304)
228 2xzl_A ATP-dependent helicase 32.1 96 0.0033 30.1 7.1 51 56-106 385-436 (802)
229 2klx_A Glutaredoxin; thioredox 31.9 1E+02 0.0035 19.8 5.8 53 76-131 7-60 (89)
230 1urh_A 3-mercaptopyruvate sulf 31.1 47 0.0016 27.3 4.2 48 61-108 72-122 (280)
231 1rif_A DAR protein, DNA helica 30.7 1.7E+02 0.0059 23.7 7.7 73 56-137 138-215 (282)
232 2zsj_A Threonine synthase; PLP 30.2 1.6E+02 0.0053 25.1 7.5 67 55-121 59-126 (352)
233 3f6c_A Positive transcription 30.2 1.3E+02 0.0045 20.5 7.7 59 73-135 24-83 (134)
234 2gxq_A Heat resistant RNA depe 30.1 1.8E+02 0.0061 21.9 7.5 61 56-116 48-116 (207)
235 1p5j_A L-serine dehydratase; l 30.0 1.9E+02 0.0066 24.9 8.1 67 55-121 73-139 (372)
236 1v5x_A PRA isomerase, phosphor 29.8 1.3E+02 0.0044 23.7 6.3 50 62-113 41-90 (203)
237 1k66_A Phytochrome response re 29.7 1.4E+02 0.0048 20.7 6.4 95 76-170 34-137 (149)
238 1y7l_A O-acetylserine sulfhydr 29.4 1.7E+02 0.0058 24.4 7.5 67 55-121 38-108 (316)
239 1e0c_A Rhodanese, sulfurtransf 29.4 69 0.0024 26.0 4.9 48 61-108 67-117 (271)
240 1q0u_A Bstdead; DEAD protein, 29.2 1.8E+02 0.0062 22.3 7.3 55 56-110 51-116 (219)
241 1srr_A SPO0F, sporulation resp 29.1 1.3E+02 0.0045 20.2 5.9 92 73-168 26-118 (124)
242 4h27_A L-serine dehydratase/L- 28.7 1.7E+02 0.0058 25.1 7.5 66 56-121 74-139 (364)
243 3n53_A Response regulator rece 28.4 1.5E+02 0.0051 20.5 11.0 93 75-171 27-122 (140)
244 3cg0_A Response regulator rece 28.4 1.5E+02 0.005 20.4 7.1 93 74-174 33-131 (140)
245 3eod_A Protein HNR; response r 28.4 1.4E+02 0.0048 20.3 7.5 40 95-134 48-87 (130)
246 2gkg_A Response regulator homo 28.3 1.3E+02 0.0046 20.0 7.1 93 73-169 28-123 (127)
247 3cz5_A Two-component response 28.1 1.6E+02 0.0055 20.8 6.6 77 94-170 47-124 (153)
248 3hzu_A Thiosulfate sulfurtrans 27.9 81 0.0028 26.6 5.2 48 61-108 97-147 (318)
249 2khp_A Glutaredoxin; thioredox 27.5 1.3E+02 0.0043 19.4 7.1 46 76-121 7-53 (92)
250 1fov_A Glutaredoxin 3, GRX3; a 26.7 1.2E+02 0.0041 18.9 6.7 54 76-131 2-56 (82)
251 3cnb_A DNA-binding response re 26.7 1.6E+02 0.0054 20.3 8.7 95 73-171 32-130 (143)
252 1uar_A Rhodanese; sulfurtransf 26.6 59 0.002 26.7 4.0 37 72-108 231-269 (285)
253 2rjn_A Response regulator rece 26.3 1.7E+02 0.0059 20.6 8.0 93 73-171 30-126 (154)
254 3crn_A Response regulator rece 26.1 1.6E+02 0.0055 20.2 8.0 95 73-171 26-121 (132)
255 3b6e_A Interferon-induced heli 26.1 1E+02 0.0035 23.5 5.2 57 56-112 58-124 (216)
256 3klo_A Transcriptional regulat 26.0 1.1E+02 0.0038 23.7 5.4 84 89-172 45-130 (225)
257 1z7w_A Cysteine synthase; tran 25.6 2.7E+02 0.0093 23.2 8.2 66 56-121 43-113 (322)
258 3h5i_A Response regulator/sens 25.5 1.7E+02 0.0058 20.3 10.1 97 72-172 27-125 (140)
259 3aay_A Putative thiosulfate su 25.3 78 0.0027 25.8 4.5 47 62-108 213-262 (277)
260 1nsj_A PRAI, phosphoribosyl an 25.1 1.4E+02 0.0049 23.4 5.8 49 62-112 42-90 (205)
261 1urh_A 3-mercaptopyruvate sulf 24.8 51 0.0017 27.0 3.3 38 72-109 228-266 (280)
262 1wrb_A DJVLGB; RNA helicase, D 24.8 2.5E+02 0.0087 22.0 10.2 75 56-136 70-160 (253)
263 3cu5_A Two component transcrip 24.7 1.8E+02 0.0062 20.2 6.8 95 74-172 28-124 (141)
264 3to5_A CHEY homolog; alpha(5)b 24.5 1.8E+02 0.0061 20.9 5.9 71 95-168 54-130 (134)
265 2fz4_A DNA repair protein RAD2 24.4 1.8E+02 0.006 23.1 6.4 50 56-108 118-168 (237)
266 3dkp_A Probable ATP-dependent 24.2 88 0.003 24.7 4.6 91 55-151 75-181 (245)
267 2eg4_A Probable thiosulfate su 24.2 63 0.0021 25.6 3.6 38 72-109 182-219 (230)
268 3hzh_A Chemotaxis response reg 24.1 1.9E+02 0.0066 20.6 6.2 62 72-135 58-120 (157)
269 3h7a_A Short chain dehydrogena 23.8 2.7E+02 0.0093 22.0 9.3 67 66-133 23-90 (252)
270 3fmo_B ATP-dependent RNA helic 23.4 2.7E+02 0.0091 22.9 7.6 88 55-151 140-241 (300)
271 3lyl_A 3-oxoacyl-(acyl-carrier 23.3 2.7E+02 0.0092 21.7 9.8 68 66-133 21-89 (247)
272 3b2n_A Uncharacterized protein 23.2 1.8E+02 0.006 19.9 5.7 76 95-170 46-122 (133)
273 3tbh_A O-acetyl serine sulfhyd 23.0 2.4E+02 0.0084 23.8 7.4 66 56-121 48-118 (334)
274 1uar_A Rhodanese; sulfurtransf 23.0 91 0.0031 25.5 4.5 48 62-109 66-116 (285)
275 3kht_A Response regulator; PSI 22.2 2E+02 0.0069 19.9 9.2 79 94-172 47-129 (144)
276 1o58_A O-acetylserine sulfhydr 22.2 2.3E+02 0.0078 23.5 6.9 67 55-121 43-111 (303)
277 2j6p_A SB(V)-AS(V) reductase; 21.9 1.5E+02 0.005 21.7 5.1 21 89-109 88-111 (152)
278 4f67_A UPF0176 protein LPG2838 21.8 56 0.0019 27.1 2.9 38 72-109 179-217 (265)
279 3r1i_A Short-chain type dehydr 21.8 2.7E+02 0.0094 22.4 7.3 68 66-133 48-116 (276)
280 1e0c_A Rhodanese, sulfurtransf 21.6 71 0.0024 26.0 3.5 37 72-108 221-258 (271)
281 2pqm_A Cysteine synthase; OASS 20.9 2.5E+02 0.0085 23.8 7.0 66 56-121 55-124 (343)
282 2obb_A Hypothetical protein; s 20.7 1.3E+02 0.0044 22.2 4.4 45 62-106 28-73 (142)
283 2q5c_A NTRC family transcripti 20.4 2.9E+02 0.0098 21.3 6.7 92 74-173 4-95 (196)
284 4e7p_A Response regulator; DNA 20.4 2.3E+02 0.0078 19.8 8.4 78 93-170 61-139 (150)
285 4g81_D Putative hexonate dehyd 20.1 3.5E+02 0.012 21.9 8.8 67 67-133 26-93 (255)
286 2wlr_A Putative thiosulfate su 20.1 1.6E+02 0.0053 25.9 5.7 48 62-109 190-239 (423)
No 1
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=1.1e-35 Score=257.02 Aligned_cols=169 Identities=28% Similarity=0.432 Sum_probs=135.7
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCccccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh
Q psy10684 17 EKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW 96 (288)
Q Consensus 17 ~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~ 96 (288)
....+++.+++|||+|+||.++.... .....|+|+..|.++|..+...++|+||||+++.+++.|+..|..
T Consensus 64 ~~~~~l~~l~~Lrq~~~hP~l~~~~~---------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~ 134 (271)
T 1z5z_A 64 RKGMILSTLLKLKQIVDHPALLKGGE---------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEK 134 (271)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHCSC---------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHhcCCc---------cccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHH
Confidence 45679999999999999999987321 234579999999999999888899999999999999999999998
Q ss_pred c-CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 97 R-GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 97 ~-~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
. |+++..+||+++.++|+++++.|+ ..+.+.|+|++|++|++|+||+.|++||+||+||||..+.||+||+||+||++
T Consensus 135 ~~g~~~~~l~G~~~~~~R~~~i~~F~-~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~ 213 (271)
T 1z5z_A 135 ELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTR 213 (271)
T ss_dssp HHCSCCCEECTTSCHHHHHHHHHHHH-HCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------
T ss_pred hcCCcEEEEECCCCHHHHHHHHHHhc-CCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCC
Confidence 5 999999999999999999999999 44467789999999999999999999999999999999999999999999999
Q ss_pred ch-------HHHHHHHhhhhccccchh
Q psy10684 176 SI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 176 ~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
+| +.++++++.++...+..+
T Consensus 214 ~v~v~~li~~~TiEe~i~~~~~~K~~l 240 (271)
T 1z5z_A 214 NVIVHKLISVGTLEEKIDQLLAFKRSL 240 (271)
T ss_dssp CCEEEEEEETTSHHHHHHHHHHHCHHH
T ss_pred ceEEEEEeeCCCHHHHHHHHHHHHHHH
Confidence 86 467777776666555444
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.1e-33 Score=272.15 Aligned_cols=188 Identities=48% Similarity=0.758 Sum_probs=151.1
Q ss_pred cccchHHhcCCCccchHHHHHHHHHHHhhcCCCCCCCCCCCC----------CCCCCCccccccCchHHHHHHHHHHHHh
Q psy10684 3 LMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPG----------PPYTTDEHLVFNSGKMVVLDKLLPKLKA 72 (288)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~----------~~~~~~~~~~~~s~K~~~l~~ll~~~~~ 72 (288)
+.+++..+..+.+....++++.+++||++|+||+++...... .........+..|+|+..|.++|..+..
T Consensus 491 ~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~ 570 (800)
T 3mwy_W 491 LTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKK 570 (800)
T ss_dssp HHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhh
Confidence 344455566666667778999999999999999998653211 0000112235579999999999999988
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEe
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLY 152 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~ 152 (288)
.++|+||||+++.+++.|+..|...|+++++++|+++.++|++++++|+.++.+..++|+||++|++||||+.|++||+|
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~ 650 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIF 650 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEES
T ss_pred CCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEe
Confidence 99999999999999999999999999999999999999999999999997666777899999999999999999999999
Q ss_pred cCCCCcchhhhhhHHHHHHhhhcch-------HHHHHHHhhhhcc
Q psy10684 153 DSDWNPQMDLQAMVREAKILRRGSI-------KKALEAKMSRYRA 190 (288)
Q Consensus 153 d~~wnp~~~~Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~ 190 (288)
|+||||..+.||+||+||+||+++| +.++++++.+.+.
T Consensus 651 D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~ 695 (800)
T 3mwy_W 651 DSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERAR 695 (800)
T ss_dssp SCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHH
T ss_pred cCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHH
Confidence 9999999999999999999999876 3566666554433
No 3
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=5.7e-30 Score=246.35 Aligned_cols=179 Identities=35% Similarity=0.524 Sum_probs=147.3
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCC-----CC--------CCCCCCCccccccCchHHHHHHHHHHHHh-CCCeEEEEec
Q psy10684 17 EKMRLQNILMQLRKCSNHPYLFDGA-----EP--------GPPYTTDEHLVFNSGKMVVLDKLLPKLKA-QESRVLIFSQ 82 (288)
Q Consensus 17 ~~~~~~~~l~~Lrq~~~hP~l~~~~-----~~--------~~~~~~~~~~~~~s~K~~~l~~ll~~~~~-~~~kviIFs~ 82 (288)
...+++..+++|||+|+||.++... +. .............|+|+..+..++..+.. .++|+||||+
T Consensus 345 ~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~ 424 (644)
T 1z3i_X 345 ISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSN 424 (644)
T ss_dssp CCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred cchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence 4567899999999999999987321 00 00111112223468999999999988754 5799999999
Q ss_pred chHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhh
Q psy10684 83 MTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDL 162 (288)
Q Consensus 83 ~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~ 162 (288)
++.+++.|+..|...|++++.+||+++.++|++++++|+++.....++|+++++|++||||+.|++||+||+||||..+.
T Consensus 425 ~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~ 504 (644)
T 1z3i_X 425 YTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDE 504 (644)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHH
T ss_pred cHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHH
Confidence 99999999999999999999999999999999999999965555568999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhcch-------HHHHHHHhhhhccccchh
Q psy10684 163 QAMVREAKILRRGSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 163 Qa~~R~~R~Gq~~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
||+||+||+||+++| +.++++++.+.+..+..+
T Consensus 505 Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l 544 (644)
T 1z3i_X 505 QAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKAL 544 (644)
T ss_dssp HHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHT
T ss_pred HHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999876 467777776665544443
No 4
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.95 E-value=3.7e-28 Score=227.30 Aligned_cols=170 Identities=28% Similarity=0.425 Sum_probs=144.7
Q ss_pred cchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCccccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHh
Q psy10684 16 LEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCY 95 (288)
Q Consensus 16 ~~~~~~~~~l~~Lrq~~~hP~l~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~ 95 (288)
..+..++..+++|||+|+||.++.... .....|+|+..+.+++.+....++|+||||++..+++.+...|.
T Consensus 292 ~~~~~~~~~l~~lr~~~~~p~l~~~~~---------~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~ 362 (500)
T 1z63_A 292 KRKGMILSTLLKLKQIVDHPALLKGGE---------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIE 362 (500)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHCSC---------CCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCHHHhcCcc---------chhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHH
Confidence 455679999999999999999886432 23456899999999999988889999999999999999999998
Q ss_pred hc-CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 96 WR-GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 96 ~~-~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
.. |+++..+||+++.++|++++++|+ ..+.++++|++++++++|+|++.+++||++|+||||..+.||+||+||+||+
T Consensus 363 ~~~~~~~~~~~g~~~~~~R~~~~~~F~-~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~ 441 (500)
T 1z63_A 363 KELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 441 (500)
T ss_dssp HHHTCCCCEEETTSCHHHHHHHHHHHH-HCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTT
T ss_pred HhhCCCeEEEECCCCHHHHHHHHHHhc-CCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCC
Confidence 86 999999999999999999999999 4445677899999999999999999999999999999999999999999999
Q ss_pred cch-------HHHHHHHhhhhccccchh
Q psy10684 175 GSI-------KKALEAKMSRYRAPFHQL 195 (288)
Q Consensus 175 ~~v-------~~~i~~~~~~~~~~~~~~ 195 (288)
++| +.++++++.+.+..+..+
T Consensus 442 ~~v~v~~lv~~~tiee~i~~~~~~K~~l 469 (500)
T 1z63_A 442 RNVIVHKLISVGTLEEKIDQLLAFKRSL 469 (500)
T ss_dssp SCEEEEEEEETTSHHHHTHHHHTTCSSS
T ss_pred CeeEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 886 467777776665554443
No 5
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.94 E-value=1.7e-27 Score=207.01 Aligned_cols=163 Identities=17% Similarity=0.212 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCC-CCCCC--CCCCccccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHH
Q psy10684 18 KMRLQNILMQLRKCSNHPYLFDGA-EPGPP--YTTDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYC 94 (288)
Q Consensus 18 ~~~~~~~l~~Lrq~~~hP~l~~~~-~~~~~--~~~~~~~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l 94 (288)
..++.+++++||+|||||+|+... .+... ....++.+..|+|+..|.++|..+.+.++||+||||++.++|+++.+|
T Consensus 66 ~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l 145 (328)
T 3hgt_A 66 LESMKTMCLNGSLVATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALL 145 (328)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhhccccCCccccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHH
Confidence 457899999999999999998432 22111 122445677999999999999999999999999999999999999999
Q ss_pred hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccc-----ccccceeEEecCCCCcchh-hhhhHHH
Q psy10684 95 YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGIN-----LATADVVVLYDSDWNPQMD-LQAMVRE 168 (288)
Q Consensus 95 ~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Gln-----l~~a~~vi~~d~~wnp~~~-~Qa~~R~ 168 (288)
..+++++++++|+...+ +++. ....+.++|+ +.+|+.|+| ++.|+.||.||++|||... .||+.|+
T Consensus 146 ~~~~~~y~RlDG~~~~~-~~k~------~~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~ 217 (328)
T 3hgt_A 146 LGNKVHIKRYDGHSIKS-AAAA------NDFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQY 217 (328)
T ss_dssp TTSSCEEEESSSCCC--------------CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCC
T ss_pred hcCCCceEeCCCCchhh-hhhc------ccCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHH
Confidence 99999999999996543 2221 2345677776 567887775 8999999999999999998 8999999
Q ss_pred HHH--hhhcch-------HHHHHHHhhhh
Q psy10684 169 AKI--LRRGSI-------KKALEAKMSRY 188 (288)
Q Consensus 169 ~R~--Gq~~~v-------~~~i~~~~~~~ 188 (288)
||+ ||+++| ..+||+.+..+
T Consensus 218 ~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 218 KRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp C---------CCEEEEEETTSHHHHHHHH
T ss_pred hhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 999 677765 46777766555
No 6
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.86 E-value=1.4e-21 Score=157.59 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=107.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+.|+..|.++++.. .+.++||||++...++.+...|...|+++..+||++++.+|..+++.|++ +.+.| |++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~--g~~~v-LvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD--FQRRI-LVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCSE-EEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC--CCCcE-EEECC
Confidence 567999999998863 56799999999999999999999999999999999999999999999984 44455 78999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||+||+|||+..|.|++||++|.|+.+.+
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~ 131 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 131 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEE
Confidence 999999999999999999999999999999999999998764
No 7
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.85 E-value=1.5e-21 Score=155.90 Aligned_cols=118 Identities=19% Similarity=0.309 Sum_probs=108.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..+.|+..|.+++.. ..+.++||||++...++.+...|...|+++..+||++++.+|..+++.|++ +.+.| |++|
T Consensus 18 ~~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~--g~~~v-lv~T 92 (163)
T 2hjv_A 18 REENKFSLLKDVLMT--ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR--GEYRY-LVAT 92 (163)
T ss_dssp CGGGHHHHHHHHHHH--HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCSE-EEEC
T ss_pred ChHHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc--CCCeE-EEEC
Confidence 357899999999886 456799999999999999999999999999999999999999999999984 34455 7899
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|+|++.+++||+||+||++..+.|++||++|.|+.+.+
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~ 135 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA 135 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE
Confidence 9999999999999999999999999999999999999998865
No 8
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=160.85 Aligned_cols=141 Identities=19% Similarity=0.224 Sum_probs=104.6
Q ss_pred hcCCCCCCCCCCCCCCCCCCccc---cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCC
Q psy10684 31 CSNHPYLFDGAEPGPPYTTDEHL---VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQ 107 (288)
Q Consensus 31 ~~~hP~l~~~~~~~~~~~~~~~~---~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~ 107 (288)
..+.|..+.............+. ...+.|+..|.+++.. .+.++||||++...++.+...|...|+++..+||+
T Consensus 11 ~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 11 VDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp -----------------CCSEEEEEECCGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred ccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 34456555443332222233332 2356788888877753 45799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 108 TAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 108 ~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|.++++.|++ +.+.| |++|+++++|+|++.+++||+||+||++..|.|++||++|.|+++.+
T Consensus 88 ~~~~~R~~~l~~F~~--g~~~v-LvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~ 154 (191)
T 2p6n_A 88 KDQEERTKAIEAFRE--GKKDV-LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA 154 (191)
T ss_dssp SCHHHHHHHHHHHHH--TSCSE-EEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE
T ss_pred CCHHHHHHHHHHHhc--CCCEE-EEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE
Confidence 999999999999984 34444 78999999999999999999999999999999999999999998764
No 9
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=159.25 Aligned_cols=119 Identities=21% Similarity=0.361 Sum_probs=94.2
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..+.|+..|.++++.. ..+.|+||||++...++.+...|...|+++..+||+++..+|.++++.|++ +.+.| |++|
T Consensus 28 ~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~--g~~~v-LvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPI-LVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH--TSSSE-EEEE
T ss_pred CcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc--CCCeE-EEEc
Confidence 4678999999999873 256899999999999999999999999999999999999999999999984 34444 7899
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|+|++.++.||+||+||++..+.|++||++|.|+++.+
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~ 146 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 146 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEE
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEE
Confidence 9999999999999999999999999999999999999988765
No 10
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.83 E-value=1.2e-20 Score=150.87 Aligned_cols=115 Identities=19% Similarity=0.276 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|+..|.++++.. .+.++||||++...++.+...|...++.+..+||+++..+|.++++.|++ +.+.| |++|+++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~v-lv~T~~~ 90 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS--GSSRI-LISTDLL 90 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCSE-EEEEGGG
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc--CCCEE-EEEcChh
Confidence 3999999998863 56799999999999999999999999999999999999999999999984 44455 7899999
Q ss_pred cccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||++|+||++..+.|++||++|.|+.+.+
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~ 130 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA 130 (165)
T ss_dssp TTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE
Confidence 9999999999999999999999999999999999998865
No 11
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.81 E-value=1.8e-20 Score=172.89 Aligned_cols=134 Identities=16% Similarity=0.287 Sum_probs=113.0
Q ss_pred ccCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeC--------CCCHHHHHHHHHhhcCCC
Q psy10684 55 FNSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDG--------QTAHEDRQRQINDFNMEG 124 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G--------~~~~~~R~~~i~~F~~~~ 124 (288)
..++|+..+.++|.... ..+.|+||||++...++.+...|...|+++..+|| +++.++|+++++.|+++
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~- 418 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG- 418 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHT-
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcC-
Confidence 46889999999999865 46889999999999999999999999999999999 99999999999999843
Q ss_pred CCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch-----HHHHHHHhhhhcccc
Q psy10684 125 SDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI-----KKALEAKMSRYRAPF 192 (288)
Q Consensus 125 ~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v-----~~~i~~~~~~~~~~~ 192 (288)
.+.| |++|+++++|+|++.+++||++|+||||..+.|++||+||.|+ +.+ +.++++++...+..+
T Consensus 419 -~~~v-Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee~~~~~~~~k 488 (494)
T 1wp9_A 419 -EFNV-LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDEAYYWSSRQK 488 (494)
T ss_dssp -SCSE-EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHHHHHHHCC--
T ss_pred -CceE-EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHHHHHHHHHHH
Confidence 3455 8899999999999999999999999999999999999999999 543 455666655554433
No 12
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.81 E-value=7.5e-20 Score=152.31 Aligned_cols=118 Identities=19% Similarity=0.314 Sum_probs=106.1
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..+.|+..|.++++. ..+.++||||++...++.+...|...|+.+..+||++++++|.++++.|++ +..+| |++|
T Consensus 14 ~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~--g~~~v-lvaT 88 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ--GEVRV-LVAT 88 (212)
T ss_dssp CTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS--SSCCE-EEEC
T ss_pred CHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC--CCCeE-EEec
Confidence 357899999999975 457799999999999999999999999999999999999999999999984 34455 8899
Q ss_pred ccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 135 RAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++++|+|++.+++||++|+||++..|.|++||++|.|+.+.+
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~ 131 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRV 131 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEE
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeE
Confidence 9999999999999999999999999999999999999988764
No 13
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=8.5e-20 Score=147.41 Aligned_cols=115 Identities=20% Similarity=0.259 Sum_probs=98.6
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|+..|.++++.. .+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|++ +.+.| |++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~--g~~~v-LvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD--GKEKV-LITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT--TSCSE-EEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc--CCCeE-EEEecch
Confidence 3888888887653 46799999999999999999999999999999999999999999999984 34454 8899999
Q ss_pred cccccccccceeEEecCC------CCcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSD------WNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~------wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||+||+| +++..+.|++||++|.|+.+.+
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~ 140 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLA 140 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEE
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceE
Confidence 999999999999999999 6668899999999999988764
No 14
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.68 E-value=3e-21 Score=155.26 Aligned_cols=120 Identities=19% Similarity=0.350 Sum_probs=107.4
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
+.|+..|.++++. ..+.++||||++...++.+...|...|+.+..+||+++..+|.++++.|++ +.+.| |++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~--g~~~v-LvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE--GRVNV-LVATDV 89 (170)
Confidence 5688888888875 346799999999999999999999999999999999999999999999983 34444 889999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchHHHH
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKAL 181 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i 181 (288)
+++|+|++.+++||++|+||++..+.|++||++|.|+.+.+-..+
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 999999999999999999999999999999999999998775333
No 15
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.77 E-value=2.6e-19 Score=179.07 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=110.3
Q ss_pred ccccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh-cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 53 LVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW-RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 53 ~~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~-~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
....++|+..+.++++. ..+.|+||||++...++.+...|.. .|+++..+||+++..+|.++++.|+++.+.+.| |
T Consensus 484 ~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~v-L 560 (968)
T 3dmq_A 484 WWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQV-L 560 (968)
T ss_dssp TTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEE-E
T ss_pred ccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccE-E
Confidence 44568899999999986 5678999999999999999999995 599999999999999999999999954434666 6
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+++++|+|++.+++||+||+||||..+.|++||+||.||++.+
T Consensus 561 vaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v 606 (968)
T 3dmq_A 561 LCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDI 606 (968)
T ss_dssp ECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCC
T ss_pred EecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceE
Confidence 7889999999999999999999999999999999999999999854
No 16
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.76 E-value=2.1e-18 Score=150.68 Aligned_cols=117 Identities=19% Similarity=0.321 Sum_probs=102.4
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+.|+.+|.++++.. .+.++||||+....++.+...|...|+.+..+||++++.+|..+++.|+. +..+| |++|+
T Consensus 12 ~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~--g~~~v-LVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQ--GEVRV-LVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHH--TSCCE-EEECS
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc--CCceE-EEEec
Confidence 467999999999763 47899999999999999999999999999999999999999999999984 34445 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||+||+||++..|.|++||++|.|+.+.+
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~ 128 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRV 128 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEE
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceE
Confidence 999999999999999999999999999999999999988754
No 17
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.72 E-value=4e-18 Score=160.64 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=61.4
Q ss_pred cCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhc------------CcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWR------------GFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~------------~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.++|+..|.++|.... ..+.|+||||++..+++.|...|... |..+..+||+++.++|.++++.|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 4889999999998754 55789999999999999999999876 556667778899999999999998
Q ss_pred CCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 122 ~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
+ ++.++| |++|+++++|+|++.+++||+||+||||..|.||+|| +|.
T Consensus 450 ~-~g~~~v-LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~ 496 (556)
T 4a2p_A 450 T-SKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 496 (556)
T ss_dssp -----CCE-EEEEC-----------CEEEEETCCSCHHHHHHC-------
T ss_pred c-cCceEE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 3 245555 8999999999999999999999999999999999999 777
No 18
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.72 E-value=8.9e-18 Score=154.38 Aligned_cols=116 Identities=17% Similarity=0.316 Sum_probs=104.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|...|.+++.. .+.++||||++...++.+...|...|+++..+||++++++|.++++.|+++ ...| |++|+
T Consensus 285 ~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g--~~~v-LvaT~ 358 (434)
T 2db3_A 285 KYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG--SMKV-LIATS 358 (434)
T ss_dssp GGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS--SCSE-EEECG
T ss_pred cHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC--CCcE-EEEch
Confidence 45677777777764 345699999999999999999999999999999999999999999999843 4444 89999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+
T Consensus 359 v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a 400 (434)
T 2db3_A 359 VASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA 400 (434)
T ss_dssp GGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEE
T ss_pred hhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEE
Confidence 999999999999999999999999999999999999998765
No 19
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.70 E-value=2.2e-18 Score=148.65 Aligned_cols=100 Identities=24% Similarity=0.327 Sum_probs=77.2
Q ss_pred HHhhhhccccchhhhhhccCCCcccccc---c-chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCc
Q psy10684 183 AKMSRYRAPFHQLRIAYGANKGKNYTEE---E-DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINL 258 (288)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~-~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl 258 (288)
+.+.+.....++++++.+.....+..++ . .|+.+..++|+++.++|++++++|+ +++++.|+|+|+++||.||||
T Consensus 103 ~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~-~~~~~~v~L~st~~~g~Glnl 181 (271)
T 1z5z_A 103 EIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINL 181 (271)
T ss_dssp HHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHH-HCTTCCEEEEECCTTCCCCCC
T ss_pred HHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhc-CCCCCCEEEEehhhhcCCcCc
Confidence 3344444456777888777665554443 2 3788999999999999999999999 676788999999999999999
Q ss_pred cccceEEEeCCCCChhhhhhhhhhh
Q psy10684 259 ATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 259 ~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++|++||++||||||..+.||++|+
T Consensus 182 ~~a~~VI~~d~~wnp~~~~Q~~gR~ 206 (271)
T 1z5z_A 182 TSANRVIHFDRWWNPAVEDQATDRV 206 (271)
T ss_dssp TTCSEEEECSCCSCTTTC-------
T ss_pred ccCCEEEEECCCCChhHHHHHHHhc
Confidence 9999999999999999999999998
No 20
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.69 E-value=1e-17 Score=157.69 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=77.8
Q ss_pred cCchHHHHHHHHHHHHh--CCCeEEEEecchHHHHHHHHHHhhcC------------cEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKA--QESRVLIFSQMTRMLDILEDYCYWRG------------FKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~--~~~kviIFs~~~~~~~~l~~~l~~~~------------~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.++|+..|.++|..... .+.|+||||++..+++.|...|...+ ..+..+||+++.++|.+++++|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 48899999999987643 35899999999999999999998764 35555667999999999999998
Q ss_pred CCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 122 ~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
+ ++.+.| |++|+++++|+|++.+++||+||+||||..|.||+|| +|.
T Consensus 449 ~-~g~~~v-LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~ 495 (555)
T 3tbk_A 449 A-SGDNNI-LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA 495 (555)
T ss_dssp ----CCSE-EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT
T ss_pred c-CCCeeE-EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC
Confidence 3 255565 7899999999999999999999999999999999999 665
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.68 E-value=5.5e-17 Score=146.29 Aligned_cols=117 Identities=19% Similarity=0.232 Sum_probs=106.1
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|...+.++++.. .+.++||||++...++.+...|...|+++..+||+++.++|.++++.|+++ ...| |++|+
T Consensus 234 ~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~v-lv~T~ 308 (391)
T 1xti_A 234 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF--QRRI-LVATN 308 (391)
T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--CCSE-EEESC
T ss_pred chhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC--CCcE-EEECC
Confidence 567888888888763 568999999999999999999999999999999999999999999999843 3444 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||++++||++..+.|++||++|.|+.+.+
T Consensus 309 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~ 350 (391)
T 1xti_A 309 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 350 (391)
T ss_dssp CCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEE
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEE
Confidence 999999999999999999999999999999999999988765
No 22
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.68 E-value=6.4e-17 Score=147.02 Aligned_cols=115 Identities=19% Similarity=0.327 Sum_probs=104.2
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|...+.+++... ...++||||++...++.+...|...|+.+..+||+++.++|.++++.|+++ ..+| |++|+++
T Consensus 262 ~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~v-lv~T~~~ 336 (410)
T 2j0s_A 262 WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG--ASRV-LISTDVW 336 (410)
T ss_dssp HHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT--SSCE-EEECGGG
T ss_pred hHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC--CCCE-EEECChh
Confidence 3888888888763 356999999999999999999999999999999999999999999999843 3444 8899999
Q ss_pred cccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||++|+||++..+.|++||++|.|+.+.+
T Consensus 337 ~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~ 376 (410)
T 2j0s_A 337 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA 376 (410)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred hCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEE
Confidence 9999999999999999999999999999999999998865
No 23
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.68 E-value=3.4e-17 Score=161.15 Aligned_cols=117 Identities=17% Similarity=0.236 Sum_probs=66.4
Q ss_pred cCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhc------------CcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWR------------GFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~------------~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.++|+..|.++|.... ..+.|+||||+++.+++.|...|... |..+..+||+++.++|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 5889999999998743 45689999999999999999999773 567777889999999999999998
Q ss_pred CCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcc
Q psy10684 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 122 ~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+ ++.+.| |++|+++++|+|++.+++||+||+||||..+.||+|| +|. +.+.
T Consensus 691 ~-~g~~~v-LVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~ 741 (797)
T 4a2q_A 691 T-SKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSK 741 (797)
T ss_dssp ----CCSE-EEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCC
T ss_pred c-cCCceE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCce
Confidence 3 245555 8999999999999999999999999999999999999 777 4443
No 24
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.67 E-value=5.4e-17 Score=161.99 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=66.9
Q ss_pred cCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhc------------CcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWR------------GFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~------------~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.++|+..|.++|.... ..+.|+||||+++.+++.|...|... |..+..+||+++..+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 4889999999998754 44689999999999999999999986 666777788899999999999998
Q ss_pred CCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 122 ~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
. ++.+.| |++|+++++|||++.+++||+||+||||..+.||+|| +|.
T Consensus 691 ~-~g~~~V-LVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~ 737 (936)
T 4a2w_A 691 T-SKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 737 (936)
T ss_dssp ----CCSE-EEEECC------CCCCSEEEEESCCSCSHHHHCC-------
T ss_pred c-cCCeeE-EEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 3 245555 8999999999999999999999999999999999999 777
No 25
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=144.53 Aligned_cols=116 Identities=21% Similarity=0.315 Sum_probs=91.2
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|+..+.++++.. .+.++|||++....++.+...|...++.+..+||+++.++|.++++.|++ +..+| |++|++
T Consensus 265 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~v-lv~T~~ 339 (414)
T 3eiq_A 265 EWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS--GSSRV-LITTDL 339 (414)
T ss_dssp TTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC--C---C-EEECSS
T ss_pred HhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc--CCCcE-EEECCc
Confidence 44777777777652 45799999999999999999999999999999999999999999999984 34444 899999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++|+|++.+++||++++||++..+.|++||++|.|+.+.+
T Consensus 340 ~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~ 380 (414)
T 3eiq_A 340 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVA 380 (414)
T ss_dssp CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CE
T ss_pred cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceE
Confidence 99999999999999999999999999999999999998765
No 26
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.66 E-value=1.5e-16 Score=144.01 Aligned_cols=117 Identities=17% Similarity=0.290 Sum_probs=105.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+.|...+..++.. ..+.++||||++...++.+...|...|+.+..+||+++.++|.++++.|++ +..+| |++|+
T Consensus 242 ~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~v-Lv~T~ 316 (400)
T 1s2m_A 242 ERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ--GKVRT-LVCSD 316 (400)
T ss_dssp GGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT--TSSSE-EEESS
T ss_pred hhhHHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc--CCCcE-EEEcC
Confidence 56788888888775 356799999999999999999999999999999999999999999999984 34444 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||++|+||++..+.|++||++|.|+.+.+
T Consensus 317 ~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~ 358 (400)
T 1s2m_A 317 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLA 358 (400)
T ss_dssp CSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEE
T ss_pred ccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceE
Confidence 999999999999999999999999999999999999998865
No 27
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=144.97 Aligned_cols=118 Identities=21% Similarity=0.372 Sum_probs=104.0
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|...+.++++.. ..+.++||||+....++.+...|...|+.+..+||+++.++|.++++.|+++ ...| |++|+
T Consensus 259 ~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~v-lvaT~ 334 (417)
T 2i4i_A 259 ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG--KSPI-LVATA 334 (417)
T ss_dssp GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT--SSCE-EEECH
T ss_pred cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcC--CCCE-EEECC
Confidence 467888888887753 3467999999999999999999999999999999999999999999999843 3444 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||++|+||++..+.|++||++|.|+.+.+
T Consensus 335 ~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~ 376 (417)
T 2i4i_A 335 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 376 (417)
T ss_dssp HHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEE
T ss_pred hhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceE
Confidence 999999999999999999999999999999999999998765
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.65 E-value=1.4e-16 Score=142.05 Aligned_cols=116 Identities=22% Similarity=0.331 Sum_probs=103.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|+..+.++++ ..+.++||||++...++.+...|...++.+..+||+++.++|.++++.|+++ ...| |++|+
T Consensus 223 ~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~v-lv~T~ 296 (367)
T 1hv8_A 223 ENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK--KIRI-LIATD 296 (367)
T ss_dssp GGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT--SSSE-EEECT
T ss_pred hHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC--CCeE-EEECC
Confidence 4567766666654 5678999999999999999999999999999999999999999999999843 4444 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
++++|+|++.+++||++++||++..+.|++||++|.|+.+.+
T Consensus 297 ~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~ 338 (367)
T 1hv8_A 297 VMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA 338 (367)
T ss_dssp THHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE
T ss_pred hhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE
Confidence 999999999999999999999999999999999999988765
No 29
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.62 E-value=9.5e-16 Score=138.02 Aligned_cols=115 Identities=23% Similarity=0.344 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|...+..++.. ..+.++|||++....++.+...|...++.+..+||+++.++|.++++.|+++ ..+| |++|+++
T Consensus 229 ~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~v-lv~T~~~ 303 (395)
T 3pey_A 229 DKFDVLTELYGL--MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG--RSKV-LITTNVL 303 (395)
T ss_dssp HHHHHHHHHHTT--TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT--SCCE-EEECGGG
T ss_pred HHHHHHHHHHHh--ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC--CCCE-EEECChh
Confidence 455555555543 2457999999999999999999999999999999999999999999999843 4444 8999999
Q ss_pred cccccccccceeEEecCCC------CcchhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDW------NPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~w------np~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||++|+|| ++..+.|++||++|.|+.+.+
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~ 349 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVA 349 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEE
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceE
Confidence 9999999999999999999 999999999999999988764
No 30
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.62 E-value=5.1e-17 Score=150.64 Aligned_cols=112 Identities=15% Similarity=0.272 Sum_probs=99.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+.|+..+.++++. ..+.|+||||++...++.+...|. +..+||+++..+|+++++.|++ +.++| |++|+
T Consensus 333 ~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~--g~~~v-Lv~T~ 402 (472)
T 2fwr_A 333 SKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT--GRFRA-IVSSQ 402 (472)
T ss_dssp CSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH--SSCSB-CBCSS
T ss_pred ChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC--CCCCE-EEEcC
Confidence 56788999998877 457899999999999999999884 4568999999999999999984 44455 78999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhh-cch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRR-GSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~-~~v 177 (288)
++++|+|++.++.||++|+||||..+.|++||++|.|+. +.+
T Consensus 403 ~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~ 445 (472)
T 2fwr_A 403 VLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEA 445 (472)
T ss_dssp CCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCE
T ss_pred chhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceE
Confidence 999999999999999999999999999999999999986 443
No 31
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.62 E-value=1.2e-16 Score=154.93 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=94.5
Q ss_pred cCchHHHHHHHHHHHHh--C-CCeEEEEecchHHHHHHHHHHhhc------CcEEEEeeCC--------CCHHHHHHHHH
Q psy10684 56 NSGKMVVLDKLLPKLKA--Q-ESRVLIFSQMTRMLDILEDYCYWR------GFKYCRLDGQ--------TAHEDRQRQIN 118 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~--~-~~kviIFs~~~~~~~~l~~~l~~~------~~~~~~~~G~--------~~~~~R~~~i~ 118 (288)
.++|+..|.++|..... . +.++||||++...++.|...|... |+++..+||+ ++.++|.++++
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~ 458 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVIS 458 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHH
Confidence 46788888888876433 2 689999999999999999999987 8999999999 99999999999
Q ss_pred hhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 119 DFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 119 ~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
.|++ +.+.| |++|+++++|+|++.++.||+||+||||..+.|++||++|-|
T Consensus 459 ~F~~--g~~~V-LVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 459 KFRT--GKINL-LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp HHCC-----CC-SEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred HHhc--CCCcE-EEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 9984 44444 789999999999999999999999999999999999976555
No 32
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.1e-17 Score=159.34 Aligned_cols=103 Identities=44% Similarity=0.669 Sum_probs=89.5
Q ss_pred HHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCC
Q psy10684 181 LEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGIN 257 (288)
Q Consensus 181 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~gln 257 (288)
+.+.+.+.....++++++++.....+..++ ..|+.+++++|+++..+|++++++|+..++..+++|+|+++||+|||
T Consensus 561 L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlN 640 (800)
T 3mwy_W 561 LDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGIN 640 (800)
T ss_dssp HHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCC
T ss_pred HHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCC
Confidence 444455666777888898888776666654 45899999999999999999999999446667799999999999999
Q ss_pred ccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 258 LATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 258 l~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|++|++||++||+|||..+.||++||
T Consensus 641 L~~a~~VI~~D~~wnp~~~~Qa~gR~ 666 (800)
T 3mwy_W 641 LMTADTVVIFDSDWNPQADLQAMARA 666 (800)
T ss_dssp CTTCCEEEESSCCSCSHHHHHHHTTT
T ss_pred ccccceEEEecCCCChhhHHHHHHHH
Confidence 99999999999999999999999999
No 33
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.61 E-value=1.8e-15 Score=137.23 Aligned_cols=115 Identities=20% Similarity=0.271 Sum_probs=101.2
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccc
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAG 137 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~ 137 (288)
.|...+.+++.. ..+.++||||+....++.+...|...++.+..+||+++.++|.++++.|+++ ..+| |++|+++
T Consensus 252 ~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~v-lv~T~~~ 326 (412)
T 3fht_A 252 EKFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG--KEKV-LVTTNVC 326 (412)
T ss_dssp HHHHHHHHHHHH--HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT--SCSE-EEECGGG
T ss_pred HHHHHHHHHHhh--cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC--CCcE-EEEcCcc
Confidence 466666666654 3467999999999999999999999999999999999999999999999843 4444 8999999
Q ss_pred cccccccccceeEEecCCCCc------chhhhhhHHHHHHhhhcch
Q psy10684 138 GLGINLATADVVVLYDSDWNP------QMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 138 ~~Glnl~~a~~vi~~d~~wnp------~~~~Qa~~R~~R~Gq~~~v 177 (288)
++|+|++.+++||++|+||++ ..+.|++||++|.|+.+.+
T Consensus 327 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~ 372 (412)
T 3fht_A 327 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 372 (412)
T ss_dssp TSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEE
T ss_pred ccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceE
Confidence 999999999999999999876 5899999999999988764
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.58 E-value=1.4e-15 Score=147.47 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=69.8
Q ss_pred cCchHHHHHHHHHHHH--hCCCeEEEEecchHHHHHHHHHHhhcC----cEEEEee--------CCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLK--AQESRVLIFSQMTRMLDILEDYCYWRG----FKYCRLD--------GQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~--~~~~kviIFs~~~~~~~~l~~~l~~~~----~~~~~~~--------G~~~~~~R~~~i~~F~ 121 (288)
.+.|+..|.+++.... ..+.++||||++...++.|...|...+ +++..++ |+++.++|.++++.|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 5789999999998753 246799999999999999999999988 8888885 4999999999999998
Q ss_pred CCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 122 ~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
. ++.++| |++|+++++|+|++.+++||+||+|||+..+.|++|| +|.
T Consensus 458 ~-~g~~~v-LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~ 504 (696)
T 2ykg_A 458 A-SGDHNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 504 (696)
T ss_dssp ----CCSC-SEEEESSCCC---CCCSEEEEESCC--CCCC----------
T ss_pred h-cCCccE-EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC
Confidence 3 244555 8999999999999999999999999999999999999 997
No 35
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.58 E-value=3.8e-15 Score=139.90 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=104.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|...+.+++.. ..+.++||||++...++.+...|...|+.+..+||+++.++|.++++.|.++ ...| |++|.
T Consensus 220 ~~~~~~~l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g--~~~v-lVaT~ 294 (523)
T 1oyw_A 220 KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD--DLQI-VVATV 294 (523)
T ss_dssp CSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SCSE-EEECT
T ss_pred CCCHHHHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC--CCeE-EEEec
Confidence 45677777777765 3567999999999999999999999999999999999999999999999843 3444 88999
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+.++|+|++.++.||++++|+++..|.|++||++|.|+.+.+
T Consensus 295 a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~ 336 (523)
T 1oyw_A 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 336 (523)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEE
T ss_pred hhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceE
Confidence 999999999999999999999999999999999999987754
No 36
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=5.1e-15 Score=140.73 Aligned_cols=103 Identities=15% Similarity=0.236 Sum_probs=94.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhc---CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccce
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWR---GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV 148 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~---~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~ 148 (288)
..+.++||||+....++.+...|... ++.+..+||++++++|.++++.|+. +...| |++|+++++|+|++.+++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~--g~~~v-LVaT~~~~~GiDip~v~~ 362 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGI-LVCTDVGARGMDFPNVHE 362 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEE-EEECGGGTSSCCCTTCCE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhc--CCCeE-EEEcchhhcCCCcccCCE
Confidence 34679999999999999999999887 9999999999999999999999983 44454 889999999999999999
Q ss_pred eEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 149 VVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 149 vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
||++++|+++..|.|++||++|.|+.+.+
T Consensus 363 VI~~~~p~s~~~y~Qr~GRagR~g~~g~~ 391 (579)
T 3sqw_A 363 VLQIGVPSELANYIHRIGRTARSGKEGSS 391 (579)
T ss_dssp EEEESCCSSTTHHHHHHTTSSCTTCCEEE
T ss_pred EEEcCCCCCHHHhhhhccccccCCCCceE
Confidence 99999999999999999999999988754
No 37
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.56 E-value=2.2e-16 Score=142.34 Aligned_cols=118 Identities=19% Similarity=0.276 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccc
Q psy10684 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG 138 (288)
Q Consensus 59 K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~ 138 (288)
|...+.++++.. .+.++||||++...++.+...|...++.+..+||+++.++|.++++.|++ +..+| |++|++++
T Consensus 246 ~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~v-lv~T~~~~ 320 (394)
T 1fuu_A 246 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS--GSSRI-LISTDLLA 320 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC--CCCcE-EEECChhh
Confidence 666666666542 35699999999999999999999999999999999999999999999983 34444 88999999
Q ss_pred ccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcchHHHH
Q psy10684 139 LGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKAL 181 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v~~~i 181 (288)
+|+|++.+++||++++||++..+.|++||++|.|+.+.+-..+
T Consensus 321 ~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 363 (394)
T 1fuu_A 321 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 363 (394)
T ss_dssp -------------------------------------------
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEE
Confidence 9999999999999999999999999999999999998775433
No 38
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.56 E-value=5.1e-16 Score=149.27 Aligned_cols=92 Identities=40% Similarity=0.688 Sum_probs=78.4
Q ss_pred cchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeC
Q psy10684 192 FHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD 268 (288)
Q Consensus 192 ~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d 268 (288)
.++++++.+.....+..++ ..|+.+.+++|+++.++|++++++|+..+...+++|+|+++||+||||++|++||++|
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d 495 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 495 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECS
T ss_pred CCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEEC
Confidence 4566777666655555543 4588999999999999999999999933334568999999999999999999999999
Q ss_pred CCCChhhhhhhhhhh
Q psy10684 269 SDWNPQMDLQAMVRT 283 (288)
Q Consensus 269 ~~wnp~~~~Qa~~Ra 283 (288)
|||||+.+.||++||
T Consensus 496 ~~wnp~~~~Qa~gR~ 510 (644)
T 1z3i_X 496 PDWNPANDEQAMARV 510 (644)
T ss_dssp CCSSHHHHHHHHTTS
T ss_pred CCCCccHHHHHHHhh
Confidence 999999999999999
No 39
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.56 E-value=8e-15 Score=138.78 Aligned_cols=103 Identities=15% Similarity=0.236 Sum_probs=94.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhc---CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccce
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWR---GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV 148 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~---~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~ 148 (288)
..+.++||||+....++.+...|... ++++..+||++++++|.++++.|++ +.+.| |++|+++++|+|++.+++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~v-LvaT~~~~~GiDip~v~~ 413 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK--DESGI-LVCTDVGARGMDFPNVHE 413 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH--CSSEE-EEECGGGTSSCCCTTCCE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc--CCCCE-EEEcchhhcCCCcccCCE
Confidence 34679999999999999999999887 9999999999999999999999983 44454 899999999999999999
Q ss_pred eEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 149 VVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 149 vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
||++|+|+++..|.|++||++|.|+.+.+
T Consensus 414 VI~~~~p~s~~~y~Qr~GRagR~g~~g~~ 442 (563)
T 3i5x_A 414 VLQIGVPSELANYIHRIGRTARSGKEGSS 442 (563)
T ss_dssp EEEESCCSSTTHHHHHHTTSSCTTCCEEE
T ss_pred EEEECCCCchhhhhhhcCccccCCCCceE
Confidence 99999999999999999999999988753
No 40
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.54 E-value=1.4e-14 Score=137.78 Aligned_cols=116 Identities=11% Similarity=0.107 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHh--CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 59 KMVVLDKLLPKLKA--QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 59 K~~~l~~ll~~~~~--~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
+...+..+++.+.. .+.++||||++...++.+...|...|+.+..+||+++.++|.++++.|.. +.+.| |++|.+
T Consensus 250 ~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~--g~~~V-lVAT~a 326 (591)
T 2v1x_A 250 TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA--NEIQV-VVATVA 326 (591)
T ss_dssp HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSSSE-EEECTT
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc--CCCeE-EEEech
Confidence 33344444443332 46899999999999999999999999999999999999999999999984 34444 899999
Q ss_pred ccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 137 GGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.++|+|++.++.||++++|+++..|.|++||++|.|+.+..
T Consensus 327 ~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~ 367 (591)
T 2v1x_A 327 FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADC 367 (591)
T ss_dssp SCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEE
T ss_pred hhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceE
Confidence 99999999999999999999999999999999999987653
No 41
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.54 E-value=4.3e-15 Score=130.95 Aligned_cols=99 Identities=16% Similarity=0.330 Sum_probs=89.7
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
..+.++|||+++.+.++.+...|. .+..+||+++.++|.++++.|++ +..+| |++|+++++|+|++.+++||+
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~--~~~~v-lv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFRE--GEYDM-LITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHT--TSCSE-EEECHHHHTTCCCCCBSEEEE
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHc--CCCcE-EEEcCccccCCCccCCCEEEE
Confidence 456899999999999999988886 56789999999999999999984 34444 889999999999999999999
Q ss_pred ecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 152 YDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 152 ~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++||++..+.|++||++|.|+.+.+
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~ 316 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEA 316 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEE
T ss_pred ecCCCCHHHhhHhcCccccCCCCceE
Confidence 99999999999999999999998875
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.52 E-value=3.9e-14 Score=132.46 Aligned_cols=114 Identities=18% Similarity=0.095 Sum_probs=97.3
Q ss_pred chHHHHHHHHHHHHhC-CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec-c
Q psy10684 58 GKMVVLDKLLPKLKAQ-ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST-R 135 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~-~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~-~ 135 (288)
.|...+.+++...... +.++|||++ ...++.+...|...+.++..+||+++.++|+++++.|++ +...| |++| +
T Consensus 331 ~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~--g~~~v-Lv~T~~ 406 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN--GKGII-IVASYG 406 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHH--CCSCE-EEEEHH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhC--CCCCE-EEEEcC
Confidence 4555666777665444 456777777 888888999999988899999999999999999999983 44555 5666 9
Q ss_pred cccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 136 AGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 136 ~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
++++|+|++.+++||+++++|++..+.|++||+||.|+.+
T Consensus 407 ~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~ 446 (510)
T 2oca_A 407 VFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSK 446 (510)
T ss_dssp HHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCC
T ss_pred hhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCC
Confidence 9999999999999999999999999999999999999876
No 43
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.51 E-value=2e-14 Score=138.82 Aligned_cols=117 Identities=14% Similarity=0.096 Sum_probs=102.1
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++.+.+......+.++||||.+....+.|...|...|+++..+||.++..+|..+...|+ .. . ++++|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~--~g--~-VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQ--KG--A-VTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTS--TT--C-EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCC--CC--e-EEEeCC
Confidence 456888888888876667789999999999999999999999999999999987777765555554 22 2 389999
Q ss_pred ccccccccc--------ccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLA--------TADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~--------~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||+|+. +..+||++|.|-++..|.|++||++|.|..|..
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999999 788999999999999999999999999999874
No 44
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.47 E-value=4.9e-14 Score=134.21 Aligned_cols=100 Identities=11% Similarity=0.080 Sum_probs=89.7
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcE--------EEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccc
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFK--------YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA 144 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~--------~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~ 144 (288)
.+.|+||||++...++.+...|...+.. +..+||.++ ++|++++++|++++.+..++|++++++++|+|++
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 3579999999999999999999876543 678999986 3699999999966566778899999999999999
Q ss_pred ccceeEEecCCCCcchhhhhhHHHHHHhh
Q psy10684 145 TADVVVLYDSDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 145 ~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq 173 (288)
.+++||+++++|++..+.|++||++|.|+
T Consensus 517 ~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 517 TCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred heeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 99999999999999999999999999986
No 45
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.46 E-value=4.6e-15 Score=137.79 Aligned_cols=120 Identities=19% Similarity=0.275 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|...+..++... ...++||||+....++.+...|...++.+..+||+++..+|..+++.|++ +...| |++|++
T Consensus 318 ~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~--g~~~i-Lv~T~~ 392 (479)
T 3fmp_B 318 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE--GKEKV-LVTTNV 392 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHc--CCCcE-EEEccc
Confidence 34555565555532 35699999999999999999999999999999999999999999999984 34444 899999
Q ss_pred ccccccccccceeEEecCCCCc------chhhhhhHHHHHHhhhcchHHHH
Q psy10684 137 GGLGINLATADVVVLYDSDWNP------QMDLQAMVREAKILRRGSIKKAL 181 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~wnp------~~~~Qa~~R~~R~Gq~~~v~~~i 181 (288)
+++|+|++.+++||+||+||++ ..|.|++||++|.|+.+.+-..+
T Consensus 393 ~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~ 443 (479)
T 3fmp_B 393 CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443 (479)
T ss_dssp ---------------------------------------------------
T ss_pred cccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999876 68999999999999988765444
No 46
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.45 E-value=7.8e-14 Score=132.31 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=100.9
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++.+.+......+.++||||++....+.|...|...|+++..+||+....+|.-+...|+ ... ++++|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~--~g~---VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQ--KGM---VTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHS--TTC---EEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCC--CCe---EEEEcc
Confidence 456889999998887677889999999999999999999999999999999965555554455564 232 499999
Q ss_pred ccccccccc--------ccceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLA--------TADVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~--------~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||+|+. +..+||++|.|-++..|.|++||++|.|+.|..
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 999999998 677999999999999999999999999999874
No 47
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.45 E-value=1e-13 Score=126.16 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=93.9
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEE-EeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYC-RLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~-~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
+....|...+.++++. .+.++||||+....++.+...|...|+++. .+||. +|. ++.|++ +.++| |+
T Consensus 235 ~~~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~--g~~~v-Lv 302 (414)
T 3oiy_A 235 RISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKV--GKINI-LI 302 (414)
T ss_dssp EESSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHT--TSCSE-EE
T ss_pred eeccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhC--CCCeE-EE
Confidence 3355788888888876 347999999999999999999999999998 89984 444 999983 45566 55
Q ss_pred e----cccccccccccc-cceeEEecCC--CCcchhhhhhHHHHHHhh
Q psy10684 133 S----TRAGGLGINLAT-ADVVVLYDSD--WNPQMDLQAMVREAKILR 173 (288)
Q Consensus 133 s----~~~~~~Glnl~~-a~~vi~~d~~--wnp~~~~Qa~~R~~R~Gq 173 (288)
+ |+++++|+|++. +++||+||+| +++..|.|++||++|.|+
T Consensus 303 at~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~ 350 (414)
T 3oiy_A 303 GVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILN 350 (414)
T ss_dssp EECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEET
T ss_pred EecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCC
Confidence 5 999999999999 9999999999 999999999999999985
No 48
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.43 E-value=2.4e-13 Score=131.11 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=103.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++.+.+......+.++||||.+....+.|...|...|+++..+||.....+|..+..+|+. +. ++++|+
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~--G~---VtIATn 497 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP--AA---VTIATN 497 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTST--TC---EEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEecc
Confidence 4568889999888777778899999999999999999999999999999999877777777778872 22 489999
Q ss_pred ccccccccccc-------------------------------------ceeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 136 AGGLGINLATA-------------------------------------DVVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 136 ~~~~Glnl~~a-------------------------------------~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
.+|||+|+... .|||++|.|-++..|.|++||++|.|..|..
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 99999999863 6999999999999999999999999999874
No 49
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.42 E-value=5.3e-13 Score=128.51 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=101.8
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..+...+...|......+.++||||+....++.|...|...|+++..+||++++.+|.++++.|.. +.+.| |++|++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~--g~~~V-LvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL--GHYDC-LVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT--TSCSE-EEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc--CCceE-EEccCh
Confidence 456777777777766778999999999999999999999999999999999999999999999983 44454 889999
Q ss_pred ccccccccccceeEEecC-----CCCcchhhhhhHHHHHHh
Q psy10684 137 GGLGINLATADVVVLYDS-----DWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~-----~wnp~~~~Qa~~R~~R~G 172 (288)
.++|+|++.++.||++|. |+++..+.|++||++|.|
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC
Confidence 999999999999999998 899999999999999986
No 50
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.40 E-value=6.7e-13 Score=127.75 Aligned_cols=116 Identities=19% Similarity=0.241 Sum_probs=102.3
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..+...++..|......+.++||||+....++.|...|...|+++..+||.+++.+|.++++.|+. +.+.| |++|++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~--g~~~V-LVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRL--GKYDV-LVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHH--TSCSE-EEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhc--CCeEE-EEecch
Confidence 356677777777666678899999999999999999999999999999999999999999999983 44444 889999
Q ss_pred ccccccccccceeEEecC-----CCCcchhhhhhHHHHHHhhhcc
Q psy10684 137 GGLGINLATADVVVLYDS-----DWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~-----~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
.++|+|++.++.||++|. |+++..+.|++||++|. ..|.
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~ 548 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGR 548 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCE
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCE
Confidence 999999999999999998 89999999999999997 4443
No 51
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.39 E-value=4.5e-14 Score=131.74 Aligned_cols=98 Identities=26% Similarity=0.349 Sum_probs=75.3
Q ss_pred hhhhccccchhhhhhccCCCcccccc----cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccc
Q psy10684 185 MSRYRAPFHQLRIAYGANKGKNYTEE----EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLAT 260 (288)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~e~----~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~ 260 (288)
+.+.....++++++.......+...+ ..|+.+..++|+++.++|++++++|+ +.++++++|+|++++|.|+|+++
T Consensus 334 l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~-~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 334 IEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQ-NNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHH-HCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhc-CCCCCCEEEEecccccCCCchhh
Confidence 33333445566666555443333332 23788899999999999999999999 66677889999999999999999
Q ss_pred cceEEEeCCCCChhhhhhhhhhh
Q psy10684 261 ADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 261 a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|++||++||+|||..+.||++|+
T Consensus 413 ~~~vi~~d~~~~~~~~~Q~~gR~ 435 (500)
T 1z63_A 413 ANRVIHFDRWWNPAVEDQATDRV 435 (500)
T ss_dssp CSEEEESSCCSCC---CHHHHTT
T ss_pred CCEEEEeCCCCCcchHHHHHHHH
Confidence 99999999999999999999999
No 52
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.39 E-value=8e-13 Score=127.82 Aligned_cols=117 Identities=14% Similarity=0.045 Sum_probs=102.4
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
...|..++.+.+......+.++||||.+....+.|...|...|+++..+||.....+|.-+...|+ .+ . ++++|+
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr--~G--~-VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGR--RG--G-VTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTS--TT--C-EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCC--CC--e-EEEecc
Confidence 346888999988877778889999999999999999999999999999999987666666667776 22 2 389999
Q ss_pred ccccccccccc----------------------------------------------------ceeEEecCCCCcchhhh
Q psy10684 136 AGGLGINLATA----------------------------------------------------DVVVLYDSDWNPQMDLQ 163 (288)
Q Consensus 136 ~~~~Glnl~~a----------------------------------------------------~~vi~~d~~wnp~~~~Q 163 (288)
.+|||+|+... .|||++|.|-++..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999954 59999999999999999
Q ss_pred hhHHHHHHhhhcch
Q psy10684 164 AMVREAKILRRGSI 177 (288)
Q Consensus 164 a~~R~~R~Gq~~~v 177 (288)
++||++|.|..|..
T Consensus 597 r~GRTGRqGdpG~s 610 (922)
T 1nkt_A 597 LRGRSGRQGDPGES 610 (922)
T ss_dssp HHHTSSGGGCCEEE
T ss_pred HhcccccCCCCeeE
Confidence 99999999999874
No 53
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.38 E-value=4.2e-14 Score=132.35 Aligned_cols=116 Identities=22% Similarity=0.277 Sum_probs=81.0
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~ 136 (288)
..|...+.+++... .+.++||||+....++.+...|...++.+..+||+++.++|.++++.|+++. .+| |++|++
T Consensus 342 ~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~--~~V-LVaT~~ 416 (508)
T 3fho_A 342 EHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGT--SKV-LVTTNV 416 (508)
T ss_dssp HHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSS--CCC-CEECC-
T ss_pred HHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCC--CeE-EEeCCh
Confidence 44666666666542 4579999999999999999999999999999999999999999999998443 344 889999
Q ss_pred ccccccccccceeEEecCC------CCcchhhhhhHHHHHHhhhcch
Q psy10684 137 GGLGINLATADVVVLYDSD------WNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 137 ~~~Glnl~~a~~vi~~d~~------wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
+++|+|++.++.||++|+| +++..+.|++||++|.|+.+.+
T Consensus 417 l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~ 463 (508)
T 3fho_A 417 IARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVS 463 (508)
T ss_dssp ----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEE
T ss_pred hhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEE
Confidence 9999999999999999999 7889999999999999988765
No 54
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.29 E-value=1.4e-12 Score=113.36 Aligned_cols=96 Identities=11% Similarity=0.135 Sum_probs=75.2
Q ss_pred HHHHHhhhhccccchhhhhhccCCCcccccc---cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCC
Q psy10684 180 ALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGI 256 (288)
Q Consensus 180 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~gl 256 (288)
.+...+..+.+..++++++++.+...++.|+ ..++.|+|+||++.. ++++. .+..++++|+ +++||.|+
T Consensus 113 ~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~-~~~k~------~~~~~~i~Ll-tsag~~gi 184 (328)
T 3hgt_A 113 VLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK-SAAAA------NDFSCTVHLF-SSEGINFT 184 (328)
T ss_dssp HHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------CCSEEEEEE-ESSCCCTT
T ss_pred HHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh-hhhhc------ccCCceEEEE-ECCCCCCc
Confidence 3445566777889999999999999998886 468999999999554 32221 2456788887 57888887
Q ss_pred C-----ccccceEEEeCCCCChhhh-hhhhhhh
Q psy10684 257 N-----LATADVVVLYDSDWNPQMD-LQAMVRT 283 (288)
Q Consensus 257 n-----l~~a~~v~~~d~~wnp~~~-~Qa~~Ra 283 (288)
| +++||.||++|++|||+.+ -||++||
T Consensus 185 n~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~ 217 (328)
T 3hgt_A 185 KYPIKSKARFDMLICLDTTVDTSQKDIQYLLQY 217 (328)
T ss_dssp TSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCC
T ss_pred CcccccCCCCCEEEEECCCCCCCChHHHHHHHH
Confidence 5 8999999999999999999 7999986
No 55
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.28 E-value=3.8e-12 Score=129.22 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=98.7
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..+......++.. ...+.+++|||+....++.+...|... ++.+..+||+++.++|.++++.|++ +.+.| |++|
T Consensus 796 ~~~~~i~~~il~~-l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~--g~~~V-LVaT 871 (1151)
T 2eyq_A 796 YDSMVVREAILRE-ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--QRFNV-LVCT 871 (1151)
T ss_dssp CCHHHHHHHHHHH-HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT--TSCCE-EEES
T ss_pred CCHHHHHHHHHHH-HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc--CCCcE-EEEC
Confidence 3344444444444 456789999999999999999999887 8899999999999999999999984 44455 8899
Q ss_pred ccccccccccccceeEEecC-CCCcchhhhhhHHHHHHhhhcc
Q psy10684 135 RAGGLGINLATADVVVLYDS-DWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 135 ~~~~~Glnl~~a~~vi~~d~-~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+++++|+|++.+++||++++ +|++..+.|++||+||.|+++.
T Consensus 872 ~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~ 914 (1151)
T 2eyq_A 872 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY 914 (1151)
T ss_dssp STTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEE
T ss_pred CcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceE
Confidence 99999999999999999998 6899999999999999997754
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.27 E-value=5.7e-12 Score=121.03 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=88.9
Q ss_pred CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecC
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS 154 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~ 154 (288)
...+||+.....++.+...|...++.+..+||++++++|.+.++.|+.+++..+| |++|+++++|+|+ .+++||+++.
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~V-LVATdi~e~GlDi-~v~~VI~~~~ 398 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI-LVATDAIGMGLNL-SIRRIIFYSL 398 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCE-EEECGGGGSSCCC-CBSEEEESCS
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEE-EEeCcHHHCCcCc-CccEEEECCc
Confidence 4558889999999999999999999999999999999999999999953355566 8999999999999 9999999999
Q ss_pred --------------CCCcchhhhhhHHHHHHhhh
Q psy10684 155 --------------DWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 155 --------------~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
|++++.+.|++||+||.|+.
T Consensus 399 ~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~ 432 (677)
T 3rc3_A 399 IKPSINEKGERELEPITTSQALQIAGRAGRFSSR 432 (677)
T ss_dssp BC-----------CBCCHHHHHHHHTTBTCTTSS
T ss_pred cccccccCCccccccCCHHHHHHHhcCCCCCCCC
Confidence 88999999999999999976
No 57
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.26 E-value=1.7e-11 Score=112.57 Aligned_cols=69 Identities=20% Similarity=0.366 Sum_probs=59.3
Q ss_pred chhhhcccCC--------CccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDG--------QTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G--------~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|+.+..++| +++.++|++.+++|+ + +.+.| |+++.++|.|+|++++++||++|++|||....|+++||
T Consensus 384 ~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~-~-~~~~v-Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~ 460 (494)
T 1wp9_A 384 DGIKAKRFVGQASKENDRGLSQREQKLILDEFA-R-GEFNV-LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRT 460 (494)
T ss_dssp TTCCEEEECCSSCC-------CCHHHHHHHHHH-H-TSCSE-EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTS
T ss_pred cCCCcEEEeccccccccccCCHHHHHHHHHHHh-c-CCceE-EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhc
Confidence 3778899999 999999999999999 3 33444 67889999999999999999999999999999999999
No 58
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.24 E-value=7.1e-12 Score=125.62 Aligned_cols=109 Identities=15% Similarity=0.053 Sum_probs=92.5
Q ss_pred HHHHHHHHHhC-CCeEEEEecchHHHHHHHHHHhhcCcE---------------------------------------EE
Q psy10684 63 LDKLLPKLKAQ-ESRVLIFSQMTRMLDILEDYCYWRGFK---------------------------------------YC 102 (288)
Q Consensus 63 l~~ll~~~~~~-~~kviIFs~~~~~~~~l~~~l~~~~~~---------------------------------------~~ 102 (288)
+..++..+... ..++|||+.+...++.+...|...++. +.
T Consensus 331 l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~ 410 (1010)
T 2xgj_A 331 IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG 410 (1010)
T ss_dssp HHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCee
Confidence 44455544433 459999999999999999988765442 67
Q ss_pred EeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE----ecC----CCCcchhhhhhHHHHHHhhh
Q psy10684 103 RLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YDS----DWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 103 ~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d~----~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
.+||+++..+|..+.+.|++ +.++| |++|+++++|+|++.++.||+ ||. ||++..|.|++||+||.|+.
T Consensus 411 ~~Hggl~~~eR~~ve~~F~~--G~ikV-LVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d 487 (1010)
T 2xgj_A 411 IHHSGLLPILKEVIEILFQE--GFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD 487 (1010)
T ss_dssp EESTTSCHHHHHHHHHHHHT--TCCSE-EEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTC
T ss_pred EECCCCCHHHHHHHHHHHhc--CCCcE-EEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCC
Confidence 89999999999999999984 45555 889999999999999999999 999 99999999999999999984
No 59
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.21 E-value=4.6e-12 Score=116.42 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=79.1
Q ss_pred HhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeE
Q psy10684 71 KAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVV 150 (288)
Q Consensus 71 ~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi 150 (288)
.+.+.++||||+....++.+...|...++++..+|| ++|.++++.|++ +.+.| |++|++.++|+|++ +++||
T Consensus 174 ~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~--g~~~v-LVaT~v~e~GiDip-v~~VI 245 (440)
T 1yks_A 174 LADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQ--KKPDF-ILATDIAEMGANLC-VERVL 245 (440)
T ss_dssp HHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC----------CCCSE-EEESSSTTCCTTCC-CSEEE
T ss_pred HhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcC--CCceE-EEECChhheeeccC-ceEEE
Confidence 345789999999999999999999999999999999 468889999984 34455 88999999999999 99998
Q ss_pred E-------------------ecCCCCcchhhhhhHHHHHH-hhhcc
Q psy10684 151 L-------------------YDSDWNPQMDLQAMVREAKI-LRRGS 176 (288)
Q Consensus 151 ~-------------------~d~~wnp~~~~Qa~~R~~R~-Gq~~~ 176 (288)
+ ++.|.+++.+.|++||++|. |+++.
T Consensus 246 ~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~ 291 (440)
T 1yks_A 246 DCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGD 291 (440)
T ss_dssp ECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE
T ss_pred eCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCce
Confidence 5 89999999999999999998 45543
No 60
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.19 E-value=3e-11 Score=117.46 Aligned_cols=108 Identities=13% Similarity=0.042 Sum_probs=87.3
Q ss_pred HHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcC------------------------------------cEEEEeeCC
Q psy10684 64 DKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRG------------------------------------FKYCRLDGQ 107 (288)
Q Consensus 64 ~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~------------------------------------~~~~~~~G~ 107 (288)
...+.+....+.++|||++....++.+...|.... ..+..+||+
T Consensus 242 ~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~ 321 (715)
T 2va8_A 242 IAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAG 321 (715)
T ss_dssp HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCC
Confidence 44444444567899999999999999998887542 237889999
Q ss_pred CCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE----ec-------CCCCcchhhhhhHHHHHHhhh
Q psy10684 108 TAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD-------SDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 108 ~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d-------~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
++.++|..+.+.|.+ +.++| |++|++++.|+|+++.+.||. || .|+++..+.|++||+||.|+.
T Consensus 322 l~~~~r~~v~~~f~~--g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~ 396 (715)
T 2va8_A 322 LSKALRDLIEEGFRQ--RKIKV-IVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD 396 (715)
T ss_dssp SCHHHHHHHHHHHHT--TCSCE-EEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTC
T ss_pred CCHHHHHHHHHHHHc--CCCeE-EEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 999999999999983 45555 899999999999999999999 99 799999999999999999964
No 61
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.19 E-value=4.9e-12 Score=123.31 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=96.5
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchH--------HHHHHHHHHhh---cCcEEEEeeCCCCHHHHHHHHHhhcCCC
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTR--------MLDILEDYCYW---RGFKYCRLDGQTAHEDRQRQINDFNMEG 124 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~--------~~~~l~~~l~~---~~~~~~~~~G~~~~~~R~~~i~~F~~~~ 124 (288)
...+...+.+.+......+.+++|||+..+ .++.+...|.. .++.+..+||+++.++|.++++.|+++
T Consensus 560 ~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G- 638 (780)
T 1gm5_A 560 PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG- 638 (780)
T ss_dssp CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT-
T ss_pred ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCC-
Confidence 445666677777766677889999998653 46677788877 478889999999999999999999843
Q ss_pred CCeeEEEEecccccccccccccceeEEecCCC-CcchhhhhhHHHHHHhhhcch
Q psy10684 125 SDIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 125 ~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~w-np~~~~Qa~~R~~R~Gq~~~v 177 (288)
.++| |++|++.++|+|+++++.||++++++ +.+.+.|++||++|.|+.+.+
T Consensus 639 -~~~I-LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ 690 (780)
T 1gm5_A 639 -RYDI-LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYC 690 (780)
T ss_dssp -SSSB-CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEE
T ss_pred -CCeE-EEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEE
Confidence 4444 88999999999999999999999985 678888999999999988754
No 62
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.18 E-value=2.3e-11 Score=112.11 Aligned_cols=94 Identities=13% Similarity=0.099 Sum_probs=84.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
..+.++|||++....++.+...|...|+.+..+||++ ++++++.|++ +..+| |++|+++++|+|++. ++||+
T Consensus 186 ~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~--g~~~v-LVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 186 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKL--TDWDF-VVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGS--SCCSE-EEECGGGGSSCCCCC-SEEEE
T ss_pred hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhcc--CCceE-EEECCHHHhCcCCCC-CEEEE
Confidence 3467999999999999999999999999999999965 4678999984 34444 899999999999999 99999
Q ss_pred ec--------------------CCCCcchhhhhhHHHHHHhh
Q psy10684 152 YD--------------------SDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 152 ~d--------------------~~wnp~~~~Qa~~R~~R~Gq 173 (288)
++ .|.++..+.|++||++|.|.
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 299 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCC
Confidence 98 88999999999999999997
No 63
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.18 E-value=2.9e-11 Score=118.19 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=88.1
Q ss_pred CCCeEEEEecchHHHHHHHHHHhh-----------cCcEEEEeeCCCCHHHHHHHHHhhcCC---CCCeeEEEEeccccc
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYW-----------RGFKYCRLDGQTAHEDRQRQINDFNME---GSDIFIFMLSTRAGG 138 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~-----------~~~~~~~~~G~~~~~~R~~~i~~F~~~---~~~~~vll~s~~~~~ 138 (288)
.+.++|||++....++.+...|.. .++.+..+||+++.++|.++++.|... .+..+| |++|++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kV-lVAT~iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKV-VISTNIAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEE-EEECTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEE-EEeCcHHH
Confidence 468999999999999999998875 588999999999999999999999611 345555 89999999
Q ss_pred ccccccccceeEEecC------------------CCCcchhhhhhHHHHHHhhhcc
Q psy10684 139 LGINLATADVVVLYDS------------------DWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 139 ~Glnl~~a~~vi~~d~------------------~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+|+|+.++++||+++. |.+...+.|++||+||. +.|.
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~ 435 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGK 435 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEE
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCE
Confidence 9999999999999766 78889999999999998 4444
No 64
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.17 E-value=6.6e-12 Score=116.00 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=82.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~ 151 (288)
..+.++|||++....++.+...|...++.+..+||. +|.++++.|++ +..+| |++|+++++|+|++. ++||+
T Consensus 188 ~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~--g~~~i-LVaT~v~~~GiDip~-~~VI~ 259 (459)
T 2z83_A 188 EYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKN--GDWDF-VITTDISEMGANFGA-SRVID 259 (459)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSS--CCCSE-EEESSCC---CCCSC-SEEEE
T ss_pred hcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccC--CCceE-EEECChHHhCeecCC-CEEEE
Confidence 346799999999999999999999999999999994 67788999984 34445 899999999999999 99998
Q ss_pred --------------------ecCCCCcchhhhhhHHHHHHhh-hcc
Q psy10684 152 --------------------YDSDWNPQMDLQAMVREAKILR-RGS 176 (288)
Q Consensus 152 --------------------~d~~wnp~~~~Qa~~R~~R~Gq-~~~ 176 (288)
||.|.++..+.|++||++|.|. .+.
T Consensus 260 ~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~ 305 (459)
T 2z83_A 260 CRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGD 305 (459)
T ss_dssp CCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCE
T ss_pred CCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCe
Confidence 7899999999999999999996 543
No 65
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.16 E-value=1.8e-11 Score=117.74 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=86.2
Q ss_pred HhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeE
Q psy10684 71 KAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVV 150 (288)
Q Consensus 71 ~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi 150 (288)
.+.+.++||||+....++.+...|...++++..+|| ++|.++++.|++ +..+| |++|++.++|+|++ +++||
T Consensus 407 ~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~--g~~~V-LVaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 407 TDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKN--GDWDF-VITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp HSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGT--CCCSE-EEECGGGGTTCCCC-CSEEE
T ss_pred HhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHC--CCceE-EEECchhhcceeeC-CcEEE
Confidence 346789999999999999999999999999999999 479999999984 34455 88999999999999 99999
Q ss_pred E--------------------ecCCCCcchhhhhhHHHHHH-hhhcc
Q psy10684 151 L--------------------YDSDWNPQMDLQAMVREAKI-LRRGS 176 (288)
Q Consensus 151 ~--------------------~d~~wnp~~~~Qa~~R~~R~-Gq~~~ 176 (288)
+ ||.|.+++.+.|++||++|. |+.+.
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ 525 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGD 525 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCE
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCE
Confidence 7 56888889999999999999 66643
No 66
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.14 E-value=2.9e-11 Score=117.32 Aligned_cols=106 Identities=17% Similarity=0.109 Sum_probs=88.5
Q ss_pred HHHHHHhCCCeEEEEecchHHHHHHHHHHhhc------------------------------CcEEEEeeCCCCHHHHHH
Q psy10684 66 LLPKLKAQESRVLIFSQMTRMLDILEDYCYWR------------------------------GFKYCRLDGQTAHEDRQR 115 (288)
Q Consensus 66 ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~------------------------------~~~~~~~~G~~~~~~R~~ 115 (288)
++.+....+.++|||++....++.+...|... +..+..+||+++.++|..
T Consensus 234 ~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 313 (702)
T 2p6r_A 234 LVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRV 313 (702)
T ss_dssp HHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHH
T ss_pred HHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHH
Confidence 33333456789999999999999888877643 124567999999999999
Q ss_pred HHHhhcCCCCCeeEEEEecccccccccccccceeEE----ec---CCCCcchhhhhhHHHHHHhhh
Q psy10684 116 QINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD---SDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 116 ~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d---~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
+.+.|.+ +.++| |++|++++.|+|+++.+.||. || .|+++..+.|++||+||.|+.
T Consensus 314 v~~~f~~--g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~ 376 (702)
T 2p6r_A 314 VEDAFRR--GNIKV-VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMD 376 (702)
T ss_dssp HHHHHHT--TSCCE-EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTC
T ss_pred HHHHHHC--CCCeE-EEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 9999983 45555 889999999999999999998 66 788999999999999999964
No 67
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.14 E-value=2.6e-11 Score=122.59 Aligned_cols=112 Identities=15% Similarity=0.071 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhC-CCeEEEEecchHHHHHHHHHHhhcCcE--------------------------------------
Q psy10684 60 MVVLDKLLPKLKAQ-ESRVLIFSQMTRMLDILEDYCYWRGFK-------------------------------------- 100 (288)
Q Consensus 60 ~~~l~~ll~~~~~~-~~kviIFs~~~~~~~~l~~~l~~~~~~-------------------------------------- 100 (288)
...+..++..+... ..++|||+.....++.+...|...++.
T Consensus 426 ~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 505 (1108)
T 3l9o_A 426 KGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 505 (1108)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhc
Confidence 34455555555444 469999999999999999888654433
Q ss_pred -EEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcch--------hhhhhHHHHHH
Q psy10684 101 -YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQM--------DLQAMVREAKI 171 (288)
Q Consensus 101 -~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~--------~~Qa~~R~~R~ 171 (288)
+..+||++++.+|..+++.|.. +.++| |++|+++++|+|++.++.||+++.+|++.. |.|++||++|.
T Consensus 506 gV~~~Hg~l~~~~R~~v~~~F~~--G~ikV-LVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~ 582 (1108)
T 3l9o_A 506 GIGIHHSGLLPILKEVIEILFQE--GFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRR 582 (1108)
T ss_dssp TEEEECSCSCHHHHHHHHHHHHH--TCCCE-EEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCS
T ss_pred CeeeecCCCCHHHHHHHHHHHhC--CCCeE-EEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCC
Confidence 6889999999999999999984 44555 899999999999999999999988887664 99999999999
Q ss_pred hhh
Q psy10684 172 LRR 174 (288)
Q Consensus 172 Gq~ 174 (288)
|+.
T Consensus 583 G~d 585 (1108)
T 3l9o_A 583 GLD 585 (1108)
T ss_dssp SSC
T ss_pred CCC
Confidence 953
No 68
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.13 E-value=4.7e-11 Score=116.23 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=88.4
Q ss_pred HHHHHhCCCeEEEEecchHHHHHHHHHHhhc------------------C---------------cEEEEeeCCCCHHHH
Q psy10684 67 LPKLKAQESRVLIFSQMTRMLDILEDYCYWR------------------G---------------FKYCRLDGQTAHEDR 113 (288)
Q Consensus 67 l~~~~~~~~kviIFs~~~~~~~~l~~~l~~~------------------~---------------~~~~~~~G~~~~~~R 113 (288)
+.+....+.++|||++....++.+...|... + ..+..+||+++.++|
T Consensus 230 ~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 309 (720)
T 2zj8_A 230 VYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDER 309 (720)
T ss_dssp HHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHH
Confidence 3333456789999999999999988887653 1 137889999999999
Q ss_pred HHHHHhhcCCCCCeeEEEEecccccccccccccceeEE----ec----CCCCcchhhhhhHHHHHHhhh
Q psy10684 114 QRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD----SDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 114 ~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d----~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
..+.+.|.+ +.++| |++|++.+.|+|++..+.||. || .|+++..+.|++||+||.|+.
T Consensus 310 ~~v~~~f~~--g~~~v-lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~ 375 (720)
T 2zj8_A 310 VLVEENFRK--GIIKA-VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD 375 (720)
T ss_dssp HHHHHHHHT--TSSCE-EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTC
T ss_pred HHHHHHHHC--CCCeE-EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCC
Confidence 999999983 45555 889999999999999999998 77 688999999999999999853
No 69
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.12 E-value=3e-11 Score=115.32 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=83.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccccccccccee--
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV-- 149 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~v-- 149 (288)
+.+.++|||++....++.+...|...++++..+||. +|.++++.|+++ ..+| |++|+++++|+|+. +++|
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g--~~~V-LVaTdv~~rGiDi~-v~~VId 424 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT--DWDF-VVTTDISEMGANFR-AGRVID 424 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS--CCSE-EEECGGGGTTCCCC-CSEEEE
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC--CcEE-EEECcHHHcCcccC-ceEEEE
Confidence 457799999999999999999999999999999984 788899999843 4444 89999999999996 8888
Q ss_pred ------------------EEecCCCCcchhhhhhHHHHHHhh
Q psy10684 150 ------------------VLYDSDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 150 ------------------i~~d~~wnp~~~~Qa~~R~~R~Gq 173 (288)
|++|.|-++..|.|++||++|.|.
T Consensus 425 ~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~ 466 (618)
T 2whx_A 425 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 466 (618)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC
Confidence 788888999999999999999975
No 70
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.07 E-value=1.7e-11 Score=123.59 Aligned_cols=89 Identities=13% Similarity=0.176 Sum_probs=69.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe--
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS-- 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s-- 133 (288)
...|...|.++++.. +.++||||+....++.+...|... +++..+||++ .++++.|++ +..+|++.+
T Consensus 260 ~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~--G~~~VLVaTas 328 (1054)
T 1gku_B 260 NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVE--GEIDHLIGTAH 328 (1054)
T ss_dssp SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHH--TSCSEEEEECC
T ss_pred chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHc--CCCcEEEEecC
Confidence 566777777777542 679999999999999999999988 9999999988 367899983 455664443
Q ss_pred -ccccccccccccc-ceeEEecCC
Q psy10684 134 -TRAGGLGINLATA-DVVVLYDSD 155 (288)
Q Consensus 134 -~~~~~~Glnl~~a-~~vi~~d~~ 155 (288)
|+++++|+|++.+ ++||++|+|
T Consensus 329 ~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 329 YYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp ------CCSCCTTTCCEEEEESCC
T ss_pred CCCeeEeccccCCcccEEEEeCCC
Confidence 9999999999995 999999999
No 71
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.07 E-value=1.1e-10 Score=117.96 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=76.5
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEE-EeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe-
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYC-RLDGQTAHEDRQRQINDFNMEGSDIFIFMLS- 133 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~-~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s- 133 (288)
...|...|.++++. .+.++|||++....++.+...|...|+++. .+|| +|.+ ++.|++ +..+| |++
T Consensus 294 ~~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~--G~~~V-LVat 361 (1104)
T 4ddu_A 294 SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKV--GKINI-LIGV 361 (1104)
T ss_dssp SCCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHH--TSCSE-EEEE
T ss_pred ecCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHC--CCCCE-EEEe
Confidence 44688888888876 347999999999999999999999999998 9999 3555 999984 45566 556
Q ss_pred ---cccccccccccc-cceeEEecCCC
Q psy10684 134 ---TRAGGLGINLAT-ADVVVLYDSDW 156 (288)
Q Consensus 134 ---~~~~~~Glnl~~-a~~vi~~d~~w 156 (288)
|+++++|+|++. +++||+||+|-
T Consensus 362 as~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 362 QAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred cCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999997
No 72
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.06 E-value=1e-10 Score=107.12 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=83.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccce---
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV--- 148 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~--- 148 (288)
+.+.++||||+....++.+...|...++++..+||+ +|.++++.|+++ ...| |++|++.++|+|++ ..+
T Consensus 169 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g--~~~v-LVaT~v~e~GiDip-~~~VI~ 240 (431)
T 2v6i_A 169 EFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE--KWDF-VITTDISEMGANFK-ADRVID 240 (431)
T ss_dssp SCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS--CCSE-EEECGGGGTSCCCC-CSEEEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC--CCeE-EEECchHHcCcccC-CcEEEe
Confidence 446799999999999999999999999999999996 578899999843 4444 89999999999998 544
Q ss_pred --------------eEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 149 --------------VVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 149 --------------vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
||+++.|.++..+.|++||++|.|..
T Consensus 241 ~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~ 280 (431)
T 2v6i_A 241 PRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEK 280 (431)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred cCccccceecccceeecccccCCHHHHHHhhhccCCCCCC
Confidence 67889999999999999999999853
No 73
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.01 E-value=4e-10 Score=112.92 Aligned_cols=111 Identities=15% Similarity=0.073 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCc--------------------------------------
Q psy10684 58 GKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGF-------------------------------------- 99 (288)
Q Consensus 58 ~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~-------------------------------------- 99 (288)
.++..+.+.+.. ....++|||+.+...++.+...|...++
T Consensus 322 ~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 322 KTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp THHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 455566666554 3457999999999999999999977655
Q ss_pred -EEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCC---------CcchhhhhhHHHH
Q psy10684 100 -KYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW---------NPQMDLQAMVREA 169 (288)
Q Consensus 100 -~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~w---------np~~~~Qa~~R~~ 169 (288)
.+..+||++++.+|..+++.|.. +.++| |++|++.++|+|++. ..||+++.+. ++..|.|++||++
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~--G~~kV-LvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAG 475 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSK--GFIKV-LFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAG 475 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHT--TCCSE-EEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGC
T ss_pred cCeeeecCCCCHHHHHHHHHHHHC--CCCcE-EEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccc
Confidence 36889999999999999999984 44555 899999999999999 6666644444 8999999999999
Q ss_pred HHhhh
Q psy10684 170 KILRR 174 (288)
Q Consensus 170 R~Gq~ 174 (288)
|.|+.
T Consensus 476 R~G~~ 480 (997)
T 4a4z_A 476 RRGLD 480 (997)
T ss_dssp CTTTC
T ss_pred cCCCC
Confidence 99854
No 74
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.00 E-value=1.8e-10 Score=109.84 Aligned_cols=92 Identities=18% Similarity=0.085 Sum_probs=79.3
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeE--
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVV-- 150 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi-- 150 (288)
++.++|||++..+.++.+.+.|...++++..+||++++++ |.. .+.+| |++|+++++|+|+. ++.||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~--~~~~V-LVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPT--IGDVV-VVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCS--SSCEE-EEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHh--CCCcE-EEECChHHccCCCC-CcEEEec
Confidence 4679999999999999999999999999999999998775 331 22244 89999999999986 99888
Q ss_pred --------Eec-----------CCCCcchhhhhhHHHHHHhhhcc
Q psy10684 151 --------LYD-----------SDWNPQMDLQAMVREAKILRRGS 176 (288)
Q Consensus 151 --------~~d-----------~~wnp~~~~Qa~~R~~R~Gq~~~ 176 (288)
+|| .|-++..|.||+||++| |+.+.
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE
Confidence 677 78888999999999999 88764
No 75
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.97 E-value=9.1e-10 Score=103.39 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=23.6
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|.....++|+++.++|.+++++|+ .++.+.| |+++.++|.|+|++.++.||+||++|||....|+++|+
T Consensus 426 g~~~~~~~~~~~~~~R~~~~~~F~-~~g~~~v-LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GRg 494 (556)
T 4a2p_A 426 GRGRRDQTTGMTLPSQKGVLDAFK-TSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRG 494 (556)
T ss_dssp -----------------------------CCE-EEEEC-----------CEEEEETCCSCHHHHHHC----
T ss_pred ccCCcccccccCHHHHHHHHHHhc-ccCceEE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCCC
Confidence 445556678899999999999999 4466665 57789999999999999999999999999999999994
No 76
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.91 E-value=2.7e-09 Score=104.99 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=28.1
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|.....++|+++.++|.+++++|+ .++.+. +|+++.++|.|+|++.++.||+||++|||....|+++|+
T Consensus 667 G~~~~~~hg~~~~~eR~~~l~~F~-~~g~~~-vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GRG 735 (797)
T 4a2q_A 667 GRGRRDQTTGMTLPSQKGVLDAFK-TSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRG 735 (797)
T ss_dssp ----------------------------CCS-EEEEECC-------CCCSEEEEESCCSCHHHHHTC----
T ss_pred ecCCcccCCCCCHHHHHHHHHHhh-ccCCce-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCCC
Confidence 455667788899999999999999 435555 567889999999999999999999999999999999994
No 77
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.77 E-value=8.9e-09 Score=95.06 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=59.3
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
....++|+++..+|++++++|+ +..+.| |+++.+++.|+|++.++.||++|++|||....|+++||
T Consensus 370 ~~~~~~g~~~~~~R~~~~~~F~--~g~~~v-Lv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~ 435 (472)
T 2fwr_A 370 LIPAITHRTSREEREEILEGFR--TGRFRA-IVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRI 435 (472)
T ss_dssp TCCBCCSSSCSHHHHTHHHHHH--HSSCSB-CBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHS
T ss_pred CcceeeCCCCHHHHHHHHHHHh--CCCCCE-EEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhc
Confidence 4567899999999999999998 345555 56779999999999999999999999999999999998
No 78
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.74 E-value=6.9e-09 Score=82.87 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=61.0
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++..+|.+.+++|+ +....| |+++.+++.|+|+..+++||++|++|||....|+++||
T Consensus 55 ~~~~~~~hg~~~~~~r~~~~~~f~--~g~~~v-LvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~ 122 (172)
T 1t5i_A 55 NFPAIAIHRGMPQEERLSRYQQFK--DFQRRI-LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA 122 (172)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHH--TTSCSE-EEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH--CCCCcE-EEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhccc
Confidence 566788999999999999999998 445555 45669999999999999999999999999999999998
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.74 E-value=7.9e-09 Score=81.72 Aligned_cols=68 Identities=22% Similarity=0.371 Sum_probs=61.1
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|+....++|+++..+|.+.+++|+ +..+.| |+++.+++.|+|+..+++||++|++|+|....|+++||
T Consensus 59 ~~~~~~~hg~~~~~~r~~~~~~f~--~g~~~v-lv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~ 126 (163)
T 2hjv_A 59 GYPCDKIHGGMIQEDRFDVMNEFK--RGEYRY-LVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRT 126 (163)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHH--TTSCSE-EEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTS
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHH--cCCCeE-EEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhcccc
Confidence 567888999999999999999998 445554 46779999999999999999999999999999999998
No 80
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.71 E-value=7.3e-09 Score=103.73 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=62.9
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCC-CeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGS-DIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~-~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.|+.+..++|+++..+|.+++++|+ +.. .+.| |+++.++|.|+|++.+++||++|++|||....|+++|+
T Consensus 527 ~g~~~~~lhG~~~~~~R~~~l~~F~-~g~~~~~v-LvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~ 597 (968)
T 3dmq_A 527 EGIRAAVFHEGMSIIERDRAAAWFA-EEDTGAQV-LLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRL 597 (968)
T ss_dssp TCCCEEEECTTSCTTHHHHHHHHHH-STTSSCEE-EECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTT
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHh-CCCCcccE-EEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhcc
Confidence 3788899999999999999999999 443 3554 55779999999999999999999999999999999998
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.68 E-value=7.9e-09 Score=83.57 Aligned_cols=68 Identities=18% Similarity=0.366 Sum_probs=47.1
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|+....++|+++..+|.+.+++|+ +..+.| |+++.+++.|+|+..++.||.+|++|+|....|+++||
T Consensus 70 g~~~~~lhg~~~~~~r~~~~~~f~--~g~~~v-LvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~ 137 (185)
T 2jgn_A 70 GYACTSIHGDRSQRDREEALHQFR--SGKSPI-LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 137 (185)
T ss_dssp TCCEEEEC--------CHHHHHHH--HTSSSE-EEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTB
T ss_pred CCceEEEeCCCCHHHHHHHHHHHH--cCCCeE-EEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHcccc
Confidence 567788999999999999999998 344454 56779999999999999999999999999999999998
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.67 E-value=2e-08 Score=79.49 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=60.8
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++..+|.+.+++|+ +....| |+++.+++.|+|+..++.||.+|++|+|....|+++||
T Consensus 54 ~~~~~~~~~~~~~~~r~~~~~~f~--~g~~~v-lv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~ 121 (165)
T 1fuk_A 54 KFTVSAIYSDLPQQERDTIMKEFR--SGSSRI-LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 121 (165)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHH--TTSCSE-EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH--cCCCEE-EEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhccc
Confidence 566788999999999999999998 445555 45679999999999999999999999999999999998
No 83
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=98.65 E-value=9.8e-09 Score=83.45 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=60.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|+....++|+++.++|.+.+++|+ +..+.| |+++.+++.|+|++.++.||++|++|+|....|+++||
T Consensus 78 g~~~~~lhg~~~~~~R~~~l~~F~--~g~~~v-LvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~ 145 (191)
T 2p6n_A 78 GVEAVAIHGGKDQEERTKAIEAFR--EGKKDV-LVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRT 145 (191)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHH--HTSCSE-EEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTS
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHh--cCCCEE-EEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCcc
Confidence 567788999999999999999998 334454 56779999999999999999999999999999999998
No 84
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.63 E-value=7.8e-09 Score=96.81 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=39.0
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|..+..++|+++.++|++++++|+ +++.+.| |+++.++|.|+|++.+++||+||++|||....|+++|+
T Consensus 425 g~~~~~~~~~~~~~~R~~~~~~F~-~~g~~~v-LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GRg 493 (555)
T 3tbk_A 425 GRGRTNRATGMTLPAQKCVLEAFR-ASGDNNI-LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRG 493 (555)
T ss_dssp C---------------------------CCSE-EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCCC
T ss_pred ecCCcccccccCHHHHHHHHHHHh-cCCCeeE-EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCcC
Confidence 345556677999999999999999 4466665 56889999999999999999999999999999999994
No 85
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.59 E-value=4e-07 Score=81.38 Aligned_cols=68 Identities=15% Similarity=0.272 Sum_probs=60.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++.++|.+.++.|+ +.... +|+++.+.+.|+|+..++.||++|++|++....|+++||
T Consensus 274 ~~~~~~~~~~~~~~~r~~~~~~f~--~~~~~-vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~ 341 (391)
T 1xti_A 274 NFPAIAIHRGMPQEERLSRYQQFK--DFQRR-ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA 341 (391)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHH--TTCCS-EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBC
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHh--cCCCc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccc
Confidence 566788999999999999999998 34444 456779999999999999999999999999999999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.01 E-value=5.7e-09 Score=83.12 Aligned_cols=69 Identities=19% Similarity=0.322 Sum_probs=61.9
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++..+|.+.+++|+ +..+. +|+++.+++.|+|+..+++||++|++|+|....|+++||
T Consensus 53 ~~~~~~~~~g~~~~~~r~~~~~~f~--~g~~~-vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~ 121 (170)
T 2yjt_D 53 AGINNCYLEGEMVQGKRNEAIKRLT--EGRVN-VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRT 121 (170)
Confidence 3678889999999999999999998 44445 556779999999999999999999999999999999998
No 87
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.54 E-value=1.7e-07 Score=90.58 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=30.5
Q ss_pred hhhcccC--------CCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 214 YLYCRLD--------GQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 214 i~~~~l~--------G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+....+. |+++.++|++++++|+ .++.+.| |+++.++|.|+|++.++.||.+|++|||....|+++|+
T Consensus 427 ~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~-~~g~~~v-LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GRG 502 (696)
T 2ykg_A 427 LKPGILTGRGKTNQNTGMTLPAQKCILDAFK-ASGDHNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRG 502 (696)
T ss_dssp CCEEC------------------------------CCSC-SEEEESSCCC---CCCSEEEEESCC--CCCC-------
T ss_pred cceeEEEccCCCccccCCCHHHHHHHHHHHH-hcCCccE-EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhccC
Confidence 5666664 5999999999999998 4355665 67889999999999999999999999999999999993
No 88
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.54 E-value=2.8e-08 Score=99.31 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=29.3
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|..+..++|+++..+|.+++++|+ .++.+. +|+++.++|.|+|++.++.||+||++|||....|+++|+
T Consensus 667 G~~~~~~hg~m~~~eR~~il~~Fr-~~g~~~-VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GRG 735 (936)
T 4a2w_A 667 GRGRRDQTTGMTLPSQKGVLDAFK-TSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRG 735 (936)
T ss_dssp ----------------------------CCS-EEEEECC------CCCCSEEEEESCCSCSHHHHCC----
T ss_pred cCCCcccCCCCCHHHHHHHHHHhh-ccCCee-EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCCC
Confidence 455666788899999999999999 435555 567889999999999999999999999999999999995
No 89
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.53 E-value=1.7e-06 Score=88.08 Aligned_cols=220 Identities=12% Similarity=0.084 Sum_probs=137.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.++|....+..+-.....+.+++|.+..+..+......+.. .++.+..++|..+..++...+.... .+.+.|++
T Consensus 634 GsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~--~g~~dIvV 711 (1151)
T 2eyq_A 634 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA--EGKIDILI 711 (1151)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHH--TTCCSEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHh--cCCCCEEE
Confidence 68999776544444456678999999998877766665543 3678899999999999988888886 34456666
Q ss_pred EecccccccccccccceeEEecCCCCcchhhhhhHHHHHHhhhc-------c----------------------------
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG-------S---------------------------- 176 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~-------~---------------------------- 176 (288)
.+.......+.+.....||+=+-.-=.... ........... +
T Consensus 712 ~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~---~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~ 788 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRH---KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 788 (1151)
T ss_dssp ECTHHHHSCCCCSSEEEEEEESGGGSCHHH---HHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBC
T ss_pred ECHHHHhCCccccccceEEEechHhcChHH---HHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccc
Confidence 665655555666666555543322100000 00111111100 0
Q ss_pred h--------HHHHHHHhhhhccccchhhhhhccCCCcccccc---c--chhhhcccCCCccccchhHHHhhcccCCCCee
Q psy10684 177 I--------KKALEAKMSRYRAPFHQLRIAYGANKGKNYTEE---E--DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIF 243 (288)
Q Consensus 177 v--------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~--~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~ 243 (288)
+ +..+.+.+.+......+++++...........+ + .++....++|+++..+|.+++++|. +..+.
T Consensus 789 i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~--~g~~~ 866 (1151)
T 2eyq_A 789 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH--HQRFN 866 (1151)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHH--TTSCC
T ss_pred cEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHH--cCCCc
Confidence 0 011111111111122333333222221111111 1 1567888999999999999999998 44555
Q ss_pred EEEEeecccccCCCccccceEEEeCC-CCChhhhhhhhhhh
Q psy10684 244 IFMLSTRAGGLGINLATADVVVLYDS-DWNPQMDLQAMVRT 283 (288)
Q Consensus 244 v~l~s~~agg~glnl~~a~~v~~~d~-~wnp~~~~Qa~~Ra 283 (288)
| |+++...+.|+|+..+++||++++ .|+++...|.++|+
T Consensus 867 V-LVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRv 906 (1151)
T 2eyq_A 867 V-LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 906 (1151)
T ss_dssp E-EEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTC
T ss_pred E-EEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhcc
Confidence 4 567789999999999999999998 59999999999998
No 90
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.51 E-value=1.1e-06 Score=85.69 Aligned_cols=218 Identities=14% Similarity=0.085 Sum_probs=131.8
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHh----hcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCY----WRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~----~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.|+|..+....+......+.+++|.+.....+......+. ..++++..++|+++..+|...++.... +.+.|++
T Consensus 399 GSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~--g~~~IvV 476 (780)
T 1gm5_A 399 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN--GQIDVVI 476 (780)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS--SCCCEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc--CCCCEEE
Confidence 6899887655554444567899999998887666555444 348999999999999999988888863 3345555
Q ss_pred EecccccccccccccceeEEecCC-------------------------CCcchhhhhhHHHHHHhh------------h
Q psy10684 132 LSTRAGGLGINLATADVVVLYDSD-------------------------WNPQMDLQAMVREAKILR------------R 174 (288)
Q Consensus 132 ~s~~~~~~Glnl~~a~~vi~~d~~-------------------------wnp~~~~Qa~~R~~R~Gq------------~ 174 (288)
.+.......+.+.....||+=+-+ ..|...... ..|. .
T Consensus 477 gT~~ll~~~~~~~~l~lVVIDEaHr~g~~qr~~l~~~~~~~~vL~mSATp~p~tl~~~-----~~g~~~~s~i~~~p~~r 551 (780)
T 1gm5_A 477 GTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALA-----FYGDLDVTVIDEMPPGR 551 (780)
T ss_dssp ECTTHHHHCCCCSCCCEEEEESCCCC-----CCCCSSSSCCCEEEEESSCCCHHHHHH-----HTCCSSCEEECCCCSSC
T ss_pred ECHHHHhhhhhccCCceEEecccchhhHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHH-----HhCCcceeeeeccCCCC
Confidence 544333333444444444443322 122111100 0000 0
Q ss_pred cch---------HHHHHHHhhhhccccchhhhhhccCCC---------cc----ccc-ccchhhhcccCCCccccchhHH
Q psy10684 175 GSI---------KKALEAKMSRYRAPFHQLRIAYGANKG---------KN----YTE-EEDRYLYCRLDGQTAHEDRQRQ 231 (288)
Q Consensus 175 ~~v---------~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~e-~~~gi~~~~l~G~~~~~~R~~~ 231 (288)
.++ ...+.+.+.+......++++....... .. +.+ .-.++....++|+++.++|+++
T Consensus 552 ~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v 631 (780)
T 1gm5_A 552 KEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRV 631 (780)
T ss_dssp CCCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHH
T ss_pred cceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHH
Confidence 011 122222222222223333333221100 00 111 1135678899999999999999
Q ss_pred HhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC-Chhhhhhhhhhh
Q psy10684 232 INDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW-NPQMDLQAMVRT 283 (288)
Q Consensus 232 i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w-np~~~~Qa~~Ra 283 (288)
+++|. +..+.| |+++.+.+.|+|+..++.||++|+++ +.+.-.|.++||
T Consensus 632 ~~~F~--~G~~~I-LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRa 681 (780)
T 1gm5_A 632 MLEFA--EGRYDI-LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRV 681 (780)
T ss_dssp HHHHT--TTSSSB-CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTS
T ss_pred HHHHH--CCCCeE-EEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhccc
Confidence 99998 445554 56889999999999999999999984 677778999998
No 91
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.50 E-value=6.4e-07 Score=79.14 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=60.8
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++.++|.+.+++|+ +.... +|+++.+.+.|+|+..++.||+++++|+|....|+++||
T Consensus 262 ~~~~~~~~~~~~~~~r~~~~~~f~--~~~~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~ 329 (367)
T 1hv8_A 262 GFKAGAIHGDLSQSQREKVIRLFK--QKKIR-ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRT 329 (367)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHH--TTSSS-EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTT
T ss_pred CCCeEEeeCCCCHHHHHHHHHHHH--cCCCe-EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhccccc
Confidence 567788999999999999999998 34444 455779999999999999999999999999999999998
No 92
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.44 E-value=1.6e-07 Score=77.44 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=61.3
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|+....++|+++.++|.+.++.|+ +...+| |+++.+.+.|+|+...++||.+|++|+|....|.++||
T Consensus 55 ~~~~~~lhg~~~~~~r~~~~~~f~--~g~~~v-lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~ 122 (212)
T 3eaq_A 55 GHPAQALHGDLSQGERERVLGAFR--QGEVRV-LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRT 122 (212)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHH--SSSCCE-EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTB
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH--CCCCeE-EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhccc
Confidence 567788999999999999999998 445555 56779999999999999999999999999999999998
No 93
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.43 E-value=1.4e-07 Score=75.34 Aligned_cols=68 Identities=22% Similarity=0.299 Sum_probs=56.7
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCCh------hhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNP------QMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp------~~~~Qa~~Ra 283 (288)
|+....++|+++..+|.+.+++|+ +..+.| |+++.+++.|+|++.+++||.+|++||| ....|.++||
T Consensus 58 ~~~~~~~~g~~~~~~R~~~~~~f~--~g~~~v-LvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~ 131 (175)
T 2rb4_A 58 GHQVSLLSGELTVEQRASIIQRFR--DGKEKV-LITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRT 131 (175)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHH--TTSCSE-EEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHH--cCCCeE-EEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhccc
Confidence 567788999999999999999998 445554 5677999999999999999999999655 5556999998
No 94
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.40 E-value=2.2e-06 Score=78.25 Aligned_cols=69 Identities=16% Similarity=0.336 Sum_probs=61.7
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+++++|. +.... +|+++.+.+.|+|+...++||.+|++|++....|.++|+
T Consensus 323 ~~~~~~~lhg~~~~~~R~~~l~~F~--~g~~~-vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~ 391 (434)
T 2db3_A 323 KEFPTTSIHGDRLQSQREQALRDFK--NGSMK-VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRT 391 (434)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHH--TSSCS-EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHH--cCCCc-EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhccc
Confidence 3677889999999999999999998 44445 456779999999999999999999999999999999998
No 95
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.40 E-value=1.4e-07 Score=91.18 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=58.3
Q ss_pred hhhhcccCCC--------ccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQ--------TAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~--------~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
|+....++|. ++.++|.+++++|+ ++.+.| |+++.++|.|+|++.++.||++|++|||....|+++||
T Consensus 430 g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~--~g~~~V-LVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRA 505 (699)
T 4gl2_A 430 GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFR--TGKINL-LIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRA 505 (699)
T ss_dssp ---CEECCCSCCCTTCCCCCHHHHHHHHHHHC--C---CC-SEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTS
T ss_pred CcceEEEECCCCccCCCCCCHHHHHHHHHHHh--cCCCcE-EEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCC
Confidence 6888899999 99999999999998 455554 56889999999999999999999999999999999998
No 96
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.38 E-value=6.7e-07 Score=79.96 Aligned_cols=70 Identities=17% Similarity=0.314 Sum_probs=0.0
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
..++....++|+++.++|.+.++.|+ +.... +|+++.+.+.|+|+..++.||++|++|++....|+++||
T Consensus 281 ~~~~~~~~~~~~~~~~~r~~~~~~f~--~~~~~-vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~ 350 (394)
T 1fuu_A 281 NDKFTVSAIYSDLPQQERDTIMKEFR--SGSSR-ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRG 350 (394)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HcCCeEEEeeCCCCHHHHHHHHHHHH--CCCCc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcc
Confidence 34778899999999999999999998 44444 556889999999999999999999999999999999998
No 97
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.31 E-value=5.6e-06 Score=78.57 Aligned_cols=222 Identities=11% Similarity=0.100 Sum_probs=134.9
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s 133 (288)
...++|-.+..--+ + ..+.++||.+.....+......|...|+++..++|+.+..++...........+...+++++
T Consensus 67 pTGsGKTl~~~lpa--l-~~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~T 143 (591)
T 2v1x_A 67 PTGGGKSLCYQLPA--L-CSDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVT 143 (591)
T ss_dssp CTTSCTTHHHHHHH--H-TSSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEEC
T ss_pred CCCChHHHHHHHHH--H-HcCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEC
Confidence 34688876432221 2 23568999999999988888888888999999999999998888888774345667777777
Q ss_pred cccccc----------cccccccceeEEecC----CCC----cchhhhhhHHHHHHhh-------hcchHHHHHHHhhhh
Q psy10684 134 TRAGGL----------GINLATADVVVLYDS----DWN----PQMDLQAMVREAKILR-------RGSIKKALEAKMSRY 188 (288)
Q Consensus 134 ~~~~~~----------Glnl~~a~~vi~~d~----~wn----p~~~~Qa~~R~~R~Gq-------~~~v~~~i~~~~~~~ 188 (288)
+..... ...+...+.+|+=|. .|. |.. ..++...+.-. +.+....+.+.+.+.
T Consensus 144 pe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~--~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~ 221 (591)
T 2v1x_A 144 PEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDY--KALGILKRQFPNASLIGLTATATNHVLTDAQKI 221 (591)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGG--GGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHH
T ss_pred hhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHH--HHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHH
Confidence 653321 111223333333222 232 221 12222222111 111111111111100
Q ss_pred ----------------------------------------cc--ccchhhhhhccCCCc-cccc--ccchhhhcccCCCc
Q psy10684 189 ----------------------------------------RA--PFHQLRIAYGANKGK-NYTE--EEDRYLYCRLDGQT 223 (288)
Q Consensus 189 ----------------------------------------~~--~~~~~~~~~~~~~~~-~~~e--~~~gi~~~~l~G~~ 223 (288)
.. .....+++....... .+.+ ...|+....++|++
T Consensus 222 l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l 301 (591)
T 2v1x_A 222 LCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANL 301 (591)
T ss_dssp TTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred hCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 00 011111111100000 0000 12367788999999
Q ss_pred cccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 224 AHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 224 ~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.++|.+.+++|. +..+. +|+++.+.|.|+|+...+.||++++++++....|.++||
T Consensus 302 ~~~~R~~~~~~F~--~g~~~-VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRa 358 (591)
T 2v1x_A 302 EPEDKTTVHRKWS--ANEIQ-VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRA 358 (591)
T ss_dssp CHHHHHHHHHHHH--TTSSS-EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHH--cCCCe-EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccC
Confidence 9999999999998 44445 456779999999999999999999999999999999998
No 98
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.30 E-value=1e-05 Score=73.05 Aligned_cols=219 Identities=12% Similarity=0.101 Sum_probs=127.0
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh---cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW---RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~---~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
..|+|..+.+-.+......+.++||.+.....+..+...+.. .++++..++|+.+..+|....+.... +...|++
T Consensus 45 TGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~--~~~~Iiv 122 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDYHILV 122 (414)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHH--TCCSEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhc--CCCCEEE
Confidence 358999865555444456678999999999998888888877 58899999999999888777777762 2345666
Q ss_pred Eeccccccc---ccccccceeEEecCC----CC---------cchhhhhhHHHHHHhh-----------h--------cc
Q psy10684 132 LSTRAGGLG---INLATADVVVLYDSD----WN---------PQMDLQAMVREAKILR-----------R--------GS 176 (288)
Q Consensus 132 ~s~~~~~~G---lnl~~a~~vi~~d~~----wn---------p~~~~Qa~~R~~R~Gq-----------~--------~~ 176 (288)
.++.....- +++...+.||+=|.+ |. .....+.+.++.+.-. . -+
T Consensus 123 ~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT 202 (414)
T 3oiy_A 123 FSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSAT 202 (414)
T ss_dssp EEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCC
T ss_pred ECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecC
Confidence 665543111 233344444443321 00 0000010111111100 0 00
Q ss_pred -----hHHHHHHHhhhh-----------------------------ccccchhhhhhccCCCccccc---ccchhhhc-c
Q psy10684 177 -----IKKALEAKMSRY-----------------------------RAPFHQLRIAYGANKGKNYTE---EEDRYLYC-R 218 (288)
Q Consensus 177 -----v~~~i~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~e---~~~gi~~~-~ 218 (288)
+...+....... .....+++++........... ...|+... .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 282 (414)
T 3oiy_A 203 AKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRSKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGET 282 (414)
T ss_dssp SSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEESSCCHHHHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEES
T ss_pred CCcchhHHHHHHHhhccCcCccccccccchheeeccCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehh
Confidence 011111111000 000112222211111000000 12355665 7
Q ss_pred cCCCccccchhHHHhhcccCCCCeeEEEEe---ecccccCCCccc-cceEEEeCCC--CChhhhhhhhhhh
Q psy10684 219 LDGQTAHEDRQRQINDFNMEGSDIFIFMLS---TRAGGLGINLAT-ADVVVLYDSD--WNPQMDLQAMVRT 283 (288)
Q Consensus 219 l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s---~~agg~glnl~~-a~~v~~~d~~--wnp~~~~Qa~~Ra 283 (288)
++|. +|+ +++|. +..+.|++.+ +.+.+.|+|+.. .++||.+|++ |++....|.++||
T Consensus 283 ~h~~----~r~--~~~f~--~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~ 345 (414)
T 3oiy_A 283 WSEF----EKN--FEDFK--VGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRS 345 (414)
T ss_dssp SSCH----HHH--HHHHH--TTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGG
T ss_pred hcCc----chH--HHHHh--CCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCcc
Confidence 7774 343 99998 5667777765 899999999999 9999999999 9999999999998
No 99
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.27 E-value=7e-07 Score=93.87 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=77.3
Q ss_pred CCeEEEEecchHHHHHHHHHHhhc-------------------------------------CcEEEEeeCCCCHHHHHHH
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWR-------------------------------------GFKYCRLDGQTAHEDRQRQ 116 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~G~~~~~~R~~~ 116 (288)
+.++|||++++..++.++..|... ...+...||+++.++|..+
T Consensus 317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~v 396 (1724)
T 4f92_B 317 KNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLV 396 (1724)
T ss_dssp SCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHH
Confidence 568999999988776666555321 1236678999999999999
Q ss_pred HHhhcCCCCCeeEEEEecccccccccccccceeEE----ecC------CCCcchhhhhhHHHHHHhhh
Q psy10684 117 INDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YDS------DWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 117 i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d~------~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
-+.|+ ++.++| |++|.+.+.|+|++..+.||. |++ +.++..+.|++||+||.|..
T Consensus 397 E~~F~--~G~i~v-lvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d 461 (1724)
T 4f92_B 397 EDLFA--DKHIQV-LVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYD 461 (1724)
T ss_dssp HHHHH--TTCCCE-EEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTC
T ss_pred HHHHH--CCCCeE-EEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCC
Confidence 99998 455666 889999999999998777763 554 34678999999999998853
No 100
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.25 E-value=9e-07 Score=93.02 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=77.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhc----------------------------------CcEEEEeeCCCCHHHHHHHH
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWR----------------------------------GFKYCRLDGQTAHEDRQRQI 117 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~----------------------------------~~~~~~~~G~~~~~~R~~~i 117 (288)
..+.++|||+..+..++.++..|... ...+..+||+++.++|..+.
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 44678999999998877766544211 12367799999999999999
Q ss_pred HhhcCCCCCeeEEEEecccccccccccccceeEE----ec------CCCCcchhhhhhHHHHHHhhh
Q psy10684 118 NDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD------SDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 118 ~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~----~d------~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
+.|. .+.++| |++|.+.+.|+|++....||. || .|.++..+.|++||+||.|..
T Consensus 1233 ~lF~--~G~i~V-LvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d 1296 (1724)
T 4f92_B 1233 QLFS--SGAIQV-VVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD 1296 (1724)
T ss_dssp HHHH--HTSBCE-EEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTC
T ss_pred HHHH--CCCCeE-EEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCC
Confidence 9998 456666 789999999999997666662 22 245678899999999999974
No 101
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.25 E-value=2.2e-06 Score=86.03 Aligned_cols=97 Identities=9% Similarity=0.002 Sum_probs=78.4
Q ss_pred CCeEEEEecchHHHHHHHHHHhhcC------------cEE-EEeeCC----------C----------CH----------
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWRG------------FKY-CRLDGQ----------T----------AH---------- 110 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~~------------~~~-~~~~G~----------~----------~~---------- 110 (288)
+.+++|||.+...+..+...|...+ +++ +.++|. + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4689999999999999998887654 444 556653 2 11
Q ss_pred -------------------HHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHH
Q psy10684 111 -------------------EDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 111 -------------------~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
..|..++++|++ +.+++ |+.++...+|+|.+.+ +++++|.|..+..+.||+||+.|.
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~--g~i~I-LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~ 692 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKN--QDIDL-LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRI 692 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT--TSSSE-EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHc--CCCeE-EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcC
Confidence 137889999984 45555 7888999999999999 788999999999999999999999
Q ss_pred hhh
Q psy10684 172 LRR 174 (288)
Q Consensus 172 Gq~ 174 (288)
+..
T Consensus 693 ~~~ 695 (1038)
T 2w00_A 693 YDA 695 (1038)
T ss_dssp CCT
T ss_pred CCC
Confidence 864
No 102
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.21 E-value=6.8e-06 Score=76.90 Aligned_cols=221 Identities=14% Similarity=0.162 Sum_probs=129.7
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
..++|..+.. +..+ ..+.++||.+.....+......|...|+++..++|..+..++......... +...++++++
T Consensus 49 TGsGKTl~~~--lp~l-~~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~--~~~~ilv~Tp 123 (523)
T 1oyw_A 49 TGGGKSLCYQ--IPAL-LLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRT--GQIRLLYIAP 123 (523)
T ss_dssp CHHHHHHHHH--HHHH-HSSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH--TCCSEEEECH
T ss_pred CCcHHHHHHH--HHHH-HhCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECH
Confidence 3678876432 2222 234689999999999888888899999999999999998888877777752 3456666665
Q ss_pred ccccc-----cccccccceeEEec----CCCCcch--hhhhhHHHHHHh-------hhcchH----HHHHHHhh------
Q psy10684 135 RAGGL-----GINLATADVVVLYD----SDWNPQM--DLQAMVREAKIL-------RRGSIK----KALEAKMS------ 186 (288)
Q Consensus 135 ~~~~~-----Glnl~~a~~vi~~d----~~wnp~~--~~Qa~~R~~R~G-------q~~~v~----~~i~~~~~------ 186 (288)
..... .+.....+.||+=| ..|.... ....+++..+.- =+.+.. ..+...+.
T Consensus 124 e~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~ 203 (523)
T 1oyw_A 124 ERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLI 203 (523)
T ss_dssp HHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEE
T ss_pred HHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeE
Confidence 53321 11112222222221 1232110 111222221110 011111 11111110
Q ss_pred --------------------------hhc-cccchhhhhhccCCCcc-ccc--ccchhhhcccCCCccccchhHHHhhcc
Q psy10684 187 --------------------------RYR-APFHQLRIAYGANKGKN-YTE--EEDRYLYCRLDGQTAHEDRQRQINDFN 236 (288)
Q Consensus 187 --------------------------~~~-~~~~~~~~~~~~~~~~~-~~e--~~~gi~~~~l~G~~~~~~R~~~i~~f~ 236 (288)
-+. ......+++.......+ +.+ ...|+....++|+++.++|.+..++|.
T Consensus 204 ~~~~~~r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 283 (523)
T 1oyw_A 204 QISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQ 283 (523)
T ss_dssp EECCCCCTTEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred EeCCCCCCceEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHH
Confidence 000 00011111111100000 000 123677788999999999999999998
Q ss_pred cCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 237 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 237 ~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.+..| |+++.+.|.|+|+...+.||.++++|++....|.++||
T Consensus 284 --~g~~~v-lVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRa 327 (523)
T 1oyw_A 284 --RDDLQI-VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRA 327 (523)
T ss_dssp --TTSCSE-EEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTS
T ss_pred --cCCCeE-EEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccc
Confidence 344554 55779999999999999999999999999999999999
No 103
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.21 E-value=3.6e-07 Score=85.08 Aligned_cols=69 Identities=19% Similarity=0.088 Sum_probs=61.2
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
+.....++|+++.++|++++++|+ +....|++.+..+.+.|+|+..++.||+++++|+|....|+++||
T Consensus 371 ~~~v~~~~g~~~~~~r~~i~~~f~--~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~ 439 (510)
T 2oca_A 371 YDKVYYVSGEVDTETRNIMKTLAE--NGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRV 439 (510)
T ss_dssp CSSEEEESSSTTHHHHHHHHHHHH--HCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHh--CCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcc
Confidence 347789999999999999999998 445556655559999999999999999999999999999999998
No 104
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.10 E-value=1.6e-06 Score=78.10 Aligned_cols=69 Identities=14% Similarity=0.361 Sum_probs=61.6
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+.+++|+ +.... +|+++.+.+.|+|+..+++||.+|++|++....|+++||
T Consensus 299 ~~~~~~~~h~~~~~~~r~~~~~~f~--~g~~~-vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~ 367 (410)
T 2j0s_A 299 ANFTVSSMHGDMPQKERESIMKEFR--SGASR-VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRS 367 (410)
T ss_dssp TTCCCEEECTTSCHHHHHHHHHHHH--HTSSC-EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTS
T ss_pred CCCceEEeeCCCCHHHHHHHHHHHH--CCCCC-EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccc
Confidence 3677888999999999999999998 33444 456889999999999999999999999999999999998
No 105
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.08 E-value=1.5e-06 Score=78.16 Aligned_cols=69 Identities=16% Similarity=0.300 Sum_probs=55.6
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+.++.|+ +.... +|+++.+.+.|+|+..++.||.+|++|++....|.++||
T Consensus 303 ~~~~~~~~h~~~~~~~r~~~~~~f~--~g~~~-vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~ 371 (414)
T 3eiq_A 303 RDFTVSAMHGDMDQKERDVIMREFR--SGSSR-VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRG 371 (414)
T ss_dssp TTCCCEEC---CHHHHHHHHHHHHS--CC----CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC
T ss_pred cCCeEEEecCCCCHHHHHHHHHHHH--cCCCc-EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcc
Confidence 3677889999999999999999998 44445 467889999999999999999999999999999999998
No 106
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.07 E-value=2.2e-06 Score=76.92 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=60.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++.++|.+.++.|+ +.... +|+++.+.+.|+|+..++.||++|++|++....|+++||
T Consensus 282 ~~~~~~~~~~~~~~~r~~~~~~f~--~g~~~-vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~ 349 (400)
T 1s2m_A 282 GYSCYYSHARMKQQERNKVFHEFR--QGKVR-TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 349 (400)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHH--TTSSS-EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBS
T ss_pred CCCeEEecCCCCHHHHHHHHHHHh--cCCCc-EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchh
Confidence 567778999999999999999998 44444 456779999999999999999999999999999999998
No 107
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.06 E-value=2.6e-06 Score=73.94 Aligned_cols=68 Identities=19% Similarity=0.310 Sum_probs=60.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++..+|.++++.|. +...+| |+++...+.|+|+...++||.+|++|++....|.++||
T Consensus 52 g~~~~~lhg~l~~~~r~~~~~~f~--~g~~~v-LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRa 119 (300)
T 3i32_A 52 GHPAQALHGDMSQGERERVMGAFR--QGEVRV-LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRT 119 (300)
T ss_dssp TCCEEEECSCCCTHHHHHHHHHHH--HTSCCE-EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhh--cCCceE-EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCc
Confidence 567788999999999999999998 344554 56679999999999999999999999999999999998
No 108
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.05 E-value=2.9e-06 Score=75.67 Aligned_cols=69 Identities=26% Similarity=0.385 Sum_probs=61.9
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC------Chhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW------NPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w------np~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+.+++|+ +.... +|+++.+.+.|+|+..++.||.+|++| ++....|.++||
T Consensus 266 ~~~~~~~~~~~~~~~~r~~~~~~f~--~g~~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~ 340 (395)
T 3pey_A 266 EGHEVSILHGDLQTQERDRLIDDFR--EGRSK-VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRT 340 (395)
T ss_dssp TTCCCEEECTTSCHHHHHHHHHHHH--TTSCC-EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTS
T ss_pred cCCcEEEeCCCCCHHHHHHHHHHHH--CCCCC-EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhcccc
Confidence 3677889999999999999999998 44445 467889999999999999999999999 999999999998
No 109
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.05 E-value=2.3e-06 Score=74.71 Aligned_cols=65 Identities=18% Similarity=0.360 Sum_probs=58.2
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
...++|+++.++|.+.+++|+ +.... +|+++.+.+.|+|+..++.||+++++|++....|+++||
T Consensus 243 ~~~~~~~~~~~~r~~~~~~f~--~~~~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~ 307 (337)
T 2z0m_A 243 AIELRGDLPQSVRNRNIDAFR--EGEYD-MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRT 307 (337)
T ss_dssp EEEECTTSCHHHHHHHHHHHH--TTSCS-EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTB
T ss_pred hhhhcCCCCHHHHHHHHHHHH--cCCCc-EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCcc
Confidence 467899999999999999998 34444 466789999999999999999999999999999999998
No 110
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.99 E-value=4.3e-06 Score=79.28 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=59.6
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
...++|+++. +|++.+++|+..+....++++++.+.+.|+|+..++.||+++++|+|....|+++||-
T Consensus 474 ~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~ 541 (590)
T 3h1t_A 474 VARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGT 541 (590)
T ss_dssp EEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSC
T ss_pred EEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhc
Confidence 4568999874 6999999998333457789999999999999999999999999999999999999983
No 111
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=97.79 E-value=8.3e-06 Score=73.48 Aligned_cols=69 Identities=16% Similarity=0.359 Sum_probs=61.5
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.++....++|+++.++|.+.+++|+ +.... +|+++.+.+.|+|+...+.||.+|++|++....|.++||
T Consensus 299 ~~~~~~~~h~~~~~~~r~~~~~~f~--~g~~~-vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~ 367 (417)
T 2i4i_A 299 EGYACTSIHGDRSQRDREEALHQFR--SGKSP-ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRT 367 (417)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHH--HTSSC-EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTB
T ss_pred CCCCeeEecCCCCHHHHHHHHHHHH--cCCCC-EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCcc
Confidence 3677888999999999999999998 33444 466779999999999999999999999999999999998
No 112
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=97.74 E-value=1.9e-05 Score=70.77 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=59.4
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCCh------hhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNP------QMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp------~~~~Qa~~Ra 283 (288)
++....++|+++.++|.+.++.|+ +.... +|+++.+.+.|+|+..++.||.+|++|+| ....|.++||
T Consensus 290 ~~~~~~~~~~~~~~~r~~~~~~f~--~g~~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~ 363 (412)
T 3fht_A 290 GHQVALLSGEMMVEQRAAVIERFR--EGKEK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRT 363 (412)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHH--TTSCS-EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTS
T ss_pred CCeEEEecCCCCHHHHHHHHHHHH--CCCCc-EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcc
Confidence 677889999999999999999998 34444 46778999999999999999999999987 4667999998
No 113
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.64 E-value=3.8e-05 Score=72.64 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=60.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++.++|.+++++|. +.... +|+++.+.+.|+++...++||.+|++|++....|.++||
T Consensus 315 ~~~v~~~hg~~~~~~R~~~~~~F~--~g~~~-vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRa 382 (579)
T 3sqw_A 315 DLPILEFHGKITQNKRTSLVKRFK--KDESG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRT 382 (579)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHH--HCSSE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTS
T ss_pred CCcEEEecCCCCHHHHHHHHHHhh--cCCCe-EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhcccc
Confidence 667788999999999999999998 34445 456779999999999999999999999999999999998
No 114
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.62 E-value=4.2e-05 Score=71.91 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=60.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
++....++|+++.++|.++++.|. +.... +|+++.+.+.|+|+...++||.+|+++++....|.++||
T Consensus 366 ~~~v~~~h~~~~~~~R~~~~~~f~--~g~~~-vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRa 433 (563)
T 3i5x_A 366 DLPILEFHGKITQNKRTSLVKRFK--KDESG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRT 433 (563)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHH--HCSSE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTS
T ss_pred CceEEEecCCCCHHHHHHHHHHHh--cCCCC-EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCcc
Confidence 667788999999999999999998 34445 556779999999999999999999999999999999998
No 115
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.16 E-value=6e-05 Score=69.40 Aligned_cols=69 Identities=22% Similarity=0.289 Sum_probs=0.0
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChh------hhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQ------MDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~------~~~Qa~~Ra 283 (288)
.++....++|+++..+|.++++.|. +.... +|+++.+.+.|+|+...+.||.+|++|++. ...|.++||
T Consensus 356 ~~~~v~~lh~~~~~~~R~~~~~~f~--~g~~~-iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRa 430 (479)
T 3fmp_B 356 EGHQVALLSGEMMVEQRAAVIERFR--EGKEK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRT 430 (479)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCccEEEecCCCCHHHHHHHHHHHH--cCCCc-EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhccc
Confidence 4678889999999999999999998 44445 466779999999999999999999999874 566999998
No 116
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.15 E-value=0.0044 Score=62.84 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=70.7
Q ss_pred cccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh---cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEE
Q psy10684 54 VFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW---RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIF 130 (288)
Q Consensus 54 ~~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~---~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vl 130 (288)
...|+|..+.+-.+......+.++||.+.....+..+...+.. .++.+..++|+.+..+|...++.+.. +...|+
T Consensus 101 pTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~--g~~~Il 178 (1104)
T 4ddu_A 101 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDYHIL 178 (1104)
T ss_dssp STTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT--SCCSEE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC--CCCCEE
Confidence 3479999977666665556788999999999999999888887 57899999999999888888888873 335566
Q ss_pred EEeccccccc---ccccccceeEEec
Q psy10684 131 MLSTRAGGLG---INLATADVVVLYD 153 (288)
Q Consensus 131 l~s~~~~~~G---lnl~~a~~vi~~d 153 (288)
+.++.....- +++...+.||+=|
T Consensus 179 V~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 179 VFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp EEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred EECHHHHHHHHHhhcccCcCEEEEeC
Confidence 6665443211 3344555555543
No 117
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.08 E-value=0.00016 Score=67.22 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=46.0
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCC------CChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSD------WNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~------wnp~~~~Qa~~Ra 283 (288)
.++....++|+++..+|++.++.|+ +.... +|+++.+.+.|+|+..++.||++|++ +++....|.++||
T Consensus 380 ~~~~v~~~hg~~~~~~R~~il~~f~--~g~~~-VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRa 454 (508)
T 3fho_A 380 DGHTVACLTGNLEGAQRDAIMDSFR--VGTSK-VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRT 454 (508)
T ss_dssp TTCCCCEEC-----CTTGGGTHHHH--SSSCC-CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCC
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHH--CCCCe-EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhc
Confidence 4677889999999999999999998 44444 46677999999999999999999999 6788888999998
No 118
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.01 E-value=0.0011 Score=64.84 Aligned_cols=117 Identities=12% Similarity=0.139 Sum_probs=94.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHh----------------------------------------
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCY---------------------------------------- 95 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~---------------------------------------- 95 (288)
...|+.++.+-+.+....+..|||+|.+.+.-+.|...|.
T Consensus 425 ~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (997)
T 2ipc_A 425 EKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQ 504 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhcccc
Confidence 4578999998888888889999999999999999999998
Q ss_pred ------------------------------------hcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc
Q psy10684 96 ------------------------------------WRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL 139 (288)
Q Consensus 96 ------------------------------------~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~ 139 (288)
..||++-.++.... ++-.+++.+=- ..+. +-++|.-+||
T Consensus 505 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~h-e~EAeIIAqAG-~~Ga---VTIATNMAGR 579 (997)
T 2ipc_A 505 LKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHH-AREAEIVAQAG-RSKT---VTIATNMAGR 579 (997)
T ss_dssp CSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSH-HHHHHHHHTTT-STTC---EEEECSSTTT
T ss_pred ccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccch-HHHHHHHHhcC-CCCe---EEEEecccCC
Confidence 67888888887753 22234555443 2222 4789999999
Q ss_pred ccccccc-------------------c-----------------------------------------------------
Q psy10684 140 GINLATA-------------------D----------------------------------------------------- 147 (288)
Q Consensus 140 Glnl~~a-------------------~----------------------------------------------------- 147 (288)
|-|+.-. .
T Consensus 580 GTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~G 659 (997)
T 2ipc_A 580 GTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALG 659 (997)
T ss_dssp TSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcC
Confidence 9998743 1
Q ss_pred --eeEEecCCCCcchhhhhhHHHHHHhhhcch
Q psy10684 148 --VVVLYDSDWNPQMDLQAMVREAKILRRGSI 177 (288)
Q Consensus 148 --~vi~~d~~wnp~~~~Qa~~R~~R~Gq~~~v 177 (288)
|||--+.+-+...+.|.-||++|-|..|+.
T Consensus 660 GLhVIGTeRhESrRIDnQLRGRaGRQGDPGsS 691 (997)
T 2ipc_A 660 GLFIIGTERHESRRIDNQLRGRAGRQGDPGGS 691 (997)
T ss_dssp CCCEEESSCCSSHHHHHHHHHTSSCSSCCCEE
T ss_pred CeEEEeccCCchHHHHHHHhcccccCCCCCCe
Confidence 899999999999999999999999999874
No 119
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.00 E-value=0.0005 Score=66.08 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=58.4
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCC--------------CCChhhhhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS--------------DWNPQMDLQ 278 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~--------------~wnp~~~~Q 278 (288)
++....++|+++.++|.++++.|+..+...+ +|+++.+.+.|+|+ .+++||+++. +++++.-.|
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~-VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~Q 421 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDPCK-ILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQ 421 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSSCC-EEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHH
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCCeE-EEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHH
Confidence 6778899999999999999999992124455 45677999999999 9999999998 777888889
Q ss_pred hhhhh
Q psy10684 279 AMVRT 283 (288)
Q Consensus 279 a~~Ra 283 (288)
.++||
T Consensus 422 R~GRA 426 (677)
T 3rc3_A 422 IAGRA 426 (677)
T ss_dssp HHTTB
T ss_pred HhcCC
Confidence 99998
No 120
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=96.89 E-value=0.0097 Score=60.15 Aligned_cols=78 Identities=10% Similarity=0.087 Sum_probs=58.9
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhh----cCc----EEEEeeCCCCHHHHHHHHHhhcCCCCC
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYW----RGF----KYCRLDGQTAHEDRQRQINDFNMEGSD 126 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~----~~~----~~~~~~G~~~~~~R~~~i~~F~~~~~~ 126 (288)
..|+|..+.+-++..+...+.++||.+.....+..+...+.. .++ .+..++|+.+..++.+..+.+. .
T Consensus 80 TGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~-~--- 155 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLR-N--- 155 (1054)
T ss_dssp BTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGG-G---
T ss_pred CCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhcc-C---
Confidence 368999777777777667788999999999987776666553 366 8899999999888877777776 2
Q ss_pred eeEEEEeccc
Q psy10684 127 IFIFMLSTRA 136 (288)
Q Consensus 127 ~~vll~s~~~ 136 (288)
+.|++.++..
T Consensus 156 ~~IlV~TP~~ 165 (1054)
T 1gku_B 156 FKIVITTTQF 165 (1054)
T ss_dssp CSEEEEEHHH
T ss_pred CCEEEEcHHH
Confidence 5566666543
No 121
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.001 Score=66.84 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=57.9
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE----eCC----CCChhhhhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YDS----DWNPQMDLQAMVRT 283 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~----~d~----~wnp~~~~Qa~~Ra 283 (288)
...++|++++.+|..+.+.|+ +..++| |+++.+.+.|+|+.+.+.||. ||. +|+|....|.++||
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~--~G~ikV-LVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRA 481 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQ--EGFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRA 481 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHH--TTCCSE-EEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTB
T ss_pred eeEECCCCCHHHHHHHHHHHh--cCCCcE-EEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhc
Confidence 567899999999999999998 455564 556699999999999999999 998 89999999999998
No 122
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.51 E-value=0.00088 Score=64.36 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=60.0
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCC-----CCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS-----DWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~-----~wnp~~~~Qa~~Ra 283 (288)
.|+....++|+++..+|.+++++|. ...+. +|+++...+.|+++...+.||++|. +|++..-.|.++||
T Consensus 462 ~gi~~~~lh~~~~~~~R~~~~~~f~--~g~~~-VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRa 535 (664)
T 1c4o_A 462 HGIRARYLHHELDAFKRQALIRDLR--LGHYD-CLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 535 (664)
T ss_dssp TTCCEEEECTTCCHHHHHHHHHHHH--TTSCS-EEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGG
T ss_pred cCCCceeecCCCCHHHHHHHHHHhh--cCCce-EEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCcc
Confidence 4667778899999999999999998 44445 5567799999999999999999998 78999999999998
No 123
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=96.39 E-value=0.012 Score=55.03 Aligned_cols=101 Identities=13% Similarity=0.166 Sum_probs=60.3
Q ss_pred HHHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEE-EEeccccc
Q psy10684 61 VVLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIF-MLSTRAGG 138 (288)
Q Consensus 61 ~~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vl-l~s~~~~~ 138 (288)
..+.+.|..+. ..+.+++||+.+...++.+...+.. ++ +..+|.. .+|.++++.|+. . + .|+ .+.+...+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~-~-~-~il~~V~~~~~~ 441 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKT-G-K-YLVMLVMRAKES 441 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHT-S-C-CEEEEEC-----
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhc-C-C-eEEEEEecCcee
Confidence 34555555543 3467999999999999999888764 33 4556654 578899999984 2 2 333 33789999
Q ss_pred ccccccc----cceeEEecCCCCcchhhhhhHHHH
Q psy10684 139 LGINLAT----ADVVVLYDSDWNPQMDLQAMVREA 169 (288)
Q Consensus 139 ~Glnl~~----a~~vi~~d~~wnp~~~~Qa~~R~~ 169 (288)
+|+|+.+ ++.||++..|+.+.....-..|..
T Consensus 442 EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~ 476 (540)
T 2vl7_A 442 EGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIE 476 (540)
T ss_dssp ----------CEEEEEEESCCCCCTTSHHHHHHHH
T ss_pred cceecCCCcccccEEEEECCCCCCCCCHHHHHHHH
Confidence 9999996 899999999986664443334443
No 124
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.21 E-value=0.0029 Score=61.12 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=57.3
Q ss_pred hhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE----eC---CCCChhhhhhhhhhh
Q psy10684 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD---SDWNPQMDLQAMVRT 283 (288)
Q Consensus 214 i~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~----~d---~~wnp~~~~Qa~~Ra 283 (288)
.....++|+++.++|..+.+.|. +..++| |+++.+.+.|+|+.+.+.||. || .++++..-.|.++||
T Consensus 297 ~~v~~~h~~l~~~~R~~v~~~f~--~g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRa 370 (702)
T 2p6r_A 297 KGAAFHHAGLLNGQRRVVEDAFR--RGNIKV-VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRA 370 (702)
T ss_dssp TTCCEECTTSCHHHHHHHHHHHH--TTSCCE-EEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTB
T ss_pred cCeEEecCCCCHHHHHHHHHHHH--CCCCeE-EEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhc
Confidence 34677899999999999999998 445554 557799999999999999888 66 678999999999998
No 125
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.20 E-value=0.003 Score=61.05 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=53.4
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE----eC-------CCCChhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD-------SDWNPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~----~d-------~~wnp~~~~Qa~~Ra 283 (288)
....++|+++.++|..+.+.|. +..++| |+++.+.+.|+|+.+.+.||. || .+++++.-.|.++||
T Consensus 314 ~v~~~h~~l~~~~r~~v~~~f~--~g~~~v-lvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 314 GVAYHHAGLSKALRDLIEEGFR--QRKIKV-IVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp TEEEECTTSCHHHHHHHHHHHH--TTCSCE-EEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred CEEEECCCCCHHHHHHHHHHHH--cCCCeE-EEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 4677899999999999999998 445555 557799999999999999998 88 789999999999998
No 126
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.18 E-value=0.0016 Score=62.43 Aligned_cols=69 Identities=13% Similarity=0.112 Sum_probs=59.6
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCC-----CCChhhhhhhhhhh
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS-----DWNPQMDLQAMVRT 283 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~-----~wnp~~~~Qa~~Ra 283 (288)
.|+....++|+++..+|.+++++|. +..+. +|+++...+.|+++...+.||++|. ++++..-.|.++||
T Consensus 468 ~gi~~~~lh~~~~~~~R~~~l~~f~--~g~~~-VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRa 541 (661)
T 2d7d_A 468 IGIKVNYLHSEIKTLERIEIIRDLR--LGKYD-VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 (661)
T ss_dssp TTCCEEEECTTCCHHHHHHHHHHHH--HTSCS-EEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTT
T ss_pred cCCCeEEEeCCCCHHHHHHHHHHHh--cCCeE-EEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcc
Confidence 4677778899999999999999998 34444 5567789999999999999999998 78999999999998
No 127
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=96.00 E-value=0.14 Score=49.14 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=50.3
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE--------------------eCCCCC
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL--------------------YDSDWN 272 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~--------------------~d~~wn 272 (288)
++....++| ++|.+++++|. +....| |+++.+.+.|+|+. .++||. +|.+.+
T Consensus 434 g~~v~~lHg----~eR~~v~~~F~--~g~~~V-LVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s 505 (673)
T 2wv9_A 434 GKRVIQLNR----KSYDTEYPKCK--NGDWDF-VITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAIT 505 (673)
T ss_dssp TCCEEEECS----SSHHHHGGGGG--TCCCSE-EEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECC
T ss_pred CCeEEEeCh----HHHHHHHHHHH--CCCceE-EEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCC
Confidence 556677788 48999999998 445454 56779999999999 999987 456777
Q ss_pred hhhhhhhhhhh
Q psy10684 273 PQMDLQAMVRT 283 (288)
Q Consensus 273 p~~~~Qa~~Ra 283 (288)
+..-.|.++||
T Consensus 506 ~~~y~Qr~GRa 516 (673)
T 2wv9_A 506 SASAAQRRGRV 516 (673)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhhcc
Confidence 78888999997
No 128
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.97 E-value=0.073 Score=48.54 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=48.5
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE--------------------eCCCCC
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL--------------------YDSDWN 272 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~--------------------~d~~wn 272 (288)
++....++| ++|.+.++.|. +....| |+++...+.|+|+.. +.||. +|+|.+
T Consensus 214 g~~v~~lh~----~~R~~~~~~f~--~g~~~i-LVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s 285 (459)
T 2z83_A 214 GKKVIQLNR----KSYDTEYPKCK--NGDWDF-VITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPIT 285 (459)
T ss_dssp TCCEEEEST----TCCCCCGGGSS--SCCCSE-EEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECC
T ss_pred CCcEEecCH----HHHHHHHhhcc--CCCceE-EEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCC
Confidence 556666776 37888999997 444454 567799999999998 99987 779999
Q ss_pred hhhhhhhhhhh
Q psy10684 273 PQMDLQAMVRT 283 (288)
Q Consensus 273 p~~~~Qa~~Ra 283 (288)
+..-.|.++||
T Consensus 286 ~~~~~QR~GRa 296 (459)
T 2z83_A 286 SASAAQRRGRV 296 (459)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHhcccc
Confidence 99999999998
No 129
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.93 E-value=0.0039 Score=60.38 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=56.7
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE----eC----CCCChhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----YD----SDWNPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~----~d----~~wnp~~~~Qa~~Ra 283 (288)
.+..++|+++.++|..+.+.|. +..++| |+++.+.+.|+|+.+.+.||. || .++++..-.|.++||
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~--~g~~~v-lvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRa 369 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFR--KGIIKA-VVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRA 369 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHH--TTSSCE-EEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTB
T ss_pred CeeeecCCCCHHHHHHHHHHHH--CCCCeE-EEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhc
Confidence 4677899999999999999998 455555 557799999999999999887 76 578999999999998
No 130
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.0058 Score=62.02 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=53.8
Q ss_pred hcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhh--------hhhhhhhh
Q psy10684 216 YCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQM--------DLQAMVRT 283 (288)
Q Consensus 216 ~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~--------~~Qa~~Ra 283 (288)
...++|++++.+|..+.+.|. +..++| |+++.+.+.|+|+.+.+.||.++..|++.. ..|.++||
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~--~G~ikV-LVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRA 579 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQ--EGFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRA 579 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHH--HTCCCE-EEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHS
T ss_pred eeeecCCCCHHHHHHHHHHHh--CCCCeE-EEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhccc
Confidence 577899999999999999998 455555 556799999999999999999998888765 66999998
No 131
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.91 E-value=0.33 Score=43.76 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=49.0
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccce-----------------EEEeCCCCChhh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADV-----------------VVLYDSDWNPQM 275 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~-----------------v~~~d~~wnp~~ 275 (288)
++....++|+ +|++.+++|. +.... +|+++...+.|+|+. ..+ +|.++.+.++..
T Consensus 195 ~~~v~~lhg~----~r~~~~~~f~--~g~~~-vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~ 266 (431)
T 2v6i_A 195 GKKVLYLNRK----TFESEYPKCK--SEKWD-FVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPAS 266 (431)
T ss_dssp TCCEEEESTT----THHHHTTHHH--HSCCS-EEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHH
T ss_pred CCeEEEeCCc----cHHHHHHhhc--CCCCe-EEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHH
Confidence 5566777876 6888999998 33444 456789999999998 555 566778889999
Q ss_pred hhhhhhhh
Q psy10684 276 DLQAMVRT 283 (288)
Q Consensus 276 ~~Qa~~Ra 283 (288)
-.|.++||
T Consensus 267 ~~Qr~GR~ 274 (431)
T 2v6i_A 267 AAQRRGRI 274 (431)
T ss_dssp HHHHHTTS
T ss_pred HHHhhhcc
Confidence 99999998
No 132
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.19 E-value=0.018 Score=56.15 Aligned_cols=70 Identities=16% Similarity=0.032 Sum_probs=58.0
Q ss_pred chhhhcccCCCccccchhHHHhhcccC----CCCeeEEEEeecccccCCCccccceEEEeCC------------------
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNME----GSDIFIFMLSTRAGGLGINLATADVVVLYDS------------------ 269 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~----~~~~~v~l~s~~agg~glnl~~a~~v~~~d~------------------ 269 (288)
.++....++|+++.++|+++++.|. . +...+ +|+++...+.|+|+.+.+.||.++.
T Consensus 337 ~~~~v~~lhg~l~~~eR~~v~~~f~-~~~~~~g~~k-VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~ 414 (773)
T 2xau_A 337 GPLSVYPLYGSLPPHQQQRIFEPAP-ESHNGRPGRK-VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVS 414 (773)
T ss_dssp CCEEEEEECTTCCHHHHGGGGSCCC-CCSSSSCCEE-EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHhhcc-cccCCCCceE-EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccc
Confidence 3566788999999999999999996 2 33444 5667799999999999999999666
Q ss_pred CCChhhhhhhhhhh
Q psy10684 270 DWNPQMDLQAMVRT 283 (288)
Q Consensus 270 ~wnp~~~~Qa~~Ra 283 (288)
|.+++.-.|.++||
T Consensus 415 p~S~~s~~QR~GRa 428 (773)
T 2xau_A 415 PISKASAQQRAGRA 428 (773)
T ss_dssp ECCHHHHHHHHHGG
T ss_pred cCCHHHHHhhcccc
Confidence 77788888999998
No 133
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.14 E-value=0.023 Score=51.61 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=44.9
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE-------------------eCCCCCh
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL-------------------YDSDWNP 273 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~-------------------~d~~wnp 273 (288)
++....++| ++|++.+++|. +..+. +|+++.+.+.|+|+. ++.||. +|.+.++
T Consensus 201 ~~~v~~lhg----~~R~~~~~~F~--~g~~~-vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~ 272 (440)
T 1yks_A 201 GKSVVVLNR----KTFEREYPTIK--QKKPD-FILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISA 272 (440)
T ss_dssp TCCEEECCS----SSCC----------CCCS-EEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCH
T ss_pred CCCEEEecc----hhHHHHHhhhc--CCCce-EEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCH
Confidence 556677788 57899999998 44445 456779999999999 999985 7888899
Q ss_pred hhhhhhhhhh
Q psy10684 274 QMDLQAMVRT 283 (288)
Q Consensus 274 ~~~~Qa~~Ra 283 (288)
..-.|.++||
T Consensus 273 ~~~~Qr~GR~ 282 (440)
T 1yks_A 273 SSAAQRRGRI 282 (440)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHhcccc
Confidence 9999999997
No 134
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=92.98 E-value=0.05 Score=54.60 Aligned_cols=65 Identities=18% Similarity=0.089 Sum_probs=52.8
Q ss_pred hhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCC---------Chhhhhhhhhhh
Q psy10684 215 LYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDW---------NPQMDLQAMVRT 283 (288)
Q Consensus 215 ~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~w---------np~~~~Qa~~Ra 283 (288)
....++|++++.+|..+.+.|. ...++| |+++.+.+.|+|+.+ ..||+.+..+ +|....|.++||
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~--~G~~kV-LvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRA 474 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFS--KGFIKV-LFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRA 474 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHH--TTCCSE-EEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGG
T ss_pred CeeeecCCCCHHHHHHHHHHHH--CCCCcE-EEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhccc
Confidence 3567899999999999999998 455565 557799999999999 6666655543 788888999998
No 135
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=92.40 E-value=0.1 Score=47.51 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=49.8
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeC--------------------CCCC
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD--------------------SDWN 272 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d--------------------~~wn 272 (288)
++....++|++ +++.++.|. +.... +|+++...+.|+|+.. +.||.+| ++.+
T Consensus 212 g~~~~~lh~~~----~~~~~~~f~--~g~~~-vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s 283 (451)
T 2jlq_A 212 GKRVIQLSRKT----FDTEYPKTK--LTDWD-FVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVT 283 (451)
T ss_dssp TCCEEEECTTT----HHHHGGGGG--SSCCS-EEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECC
T ss_pred CCeEEECCHHH----HHHHHHhhc--cCCce-EEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCC
Confidence 45566667654 467889997 44444 4567799999999999 9999888 7788
Q ss_pred hhhhhhhhhhh
Q psy10684 273 PQMDLQAMVRT 283 (288)
Q Consensus 273 p~~~~Qa~~Ra 283 (288)
+..-.|.++||
T Consensus 284 ~~~y~Qr~GRa 294 (451)
T 2jlq_A 284 PASAAQRRGRI 294 (451)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHhcccc
Confidence 88899999998
No 136
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=89.99 E-value=0.27 Score=47.98 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=55.4
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcc--------ccceEEEeCCCCChhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA--------TADVVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~--------~a~~v~~~d~~wnp~~~~Qa~~R 282 (288)
..|+.+..++|+....+|..+..+|+ .. . .++++..+|=|++.. +-.+||.+|.+-++-.+.|.++|
T Consensus 454 ~~gi~~~vLhg~~~~rEr~ii~~ag~--~g--~-VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GR 528 (844)
T 1tf5_A 454 NKGIPHQVLNAKNHEREAQIIEEAGQ--KG--A-VTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGR 528 (844)
T ss_dssp TTTCCCEEECSSCHHHHHHHHTTTTS--TT--C-EEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTT
T ss_pred HCCCCEEEeeCCccHHHHHHHHHcCC--CC--e-EEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCc
Confidence 45888999999987777765555554 22 3 466779999999998 78899999999999999999999
Q ss_pred h
Q psy10684 283 T 283 (288)
Q Consensus 283 a 283 (288)
+
T Consensus 529 T 529 (844)
T 1tf5_A 529 S 529 (844)
T ss_dssp S
T ss_pred c
Confidence 8
No 137
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=89.13 E-value=1.4 Score=41.76 Aligned_cols=91 Identities=8% Similarity=0.150 Sum_probs=55.6
Q ss_pred HHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec--cccc
Q psy10684 62 VLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST--RAGG 138 (288)
Q Consensus 62 ~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~--~~~~ 138 (288)
.+.+.|..+. ..+..++||..+-..++.+...+.. +..- ...+++..+|..++++|+ ..+ .| |+++ ..-+
T Consensus 435 ~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~--~v-L~~v~~gsf~ 507 (620)
T 4a15_A 435 RMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDH--GT-IFAVSGGRLS 507 (620)
T ss_dssp HHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSC--CE-EEEETTSCC-
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCC--cE-EEEEecCcee
Confidence 3444444433 3356788888888888888887762 2222 444455678999999998 333 33 5554 5899
Q ss_pred cccccc--ccceeEEecCCCCcc
Q psy10684 139 LGINLA--TADVVVLYDSDWNPQ 159 (288)
Q Consensus 139 ~Glnl~--~a~~vi~~d~~wnp~ 159 (288)
+|+|+. ....||+...|+-+.
T Consensus 508 EGiD~~g~~l~~viI~~lPfp~~ 530 (620)
T 4a15_A 508 EGINFPGNELEMIILAGLPFPRP 530 (620)
T ss_dssp -------CCCCEEEESSCCCCCC
T ss_pred ccccCCCCceEEEEEEcCCCCCC
Confidence 999999 578999999887543
No 138
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=87.51 E-value=0.56 Score=45.25 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=52.1
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcc--------ccceEEEeCCCCChhhhhhhhhh
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLA--------TADVVVLYDSDWNPQMDLQAMVR 282 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~--------~a~~v~~~d~~wnp~~~~Qa~~R 282 (288)
..|+.+..+.|+....+|.....+|+ .. . .++++..+|=|++.. +-.+||.++++-++-.+.|.++|
T Consensus 496 ~~Gi~~~vLhgkq~~rE~~ii~~ag~--~g--~-VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGR 570 (822)
T 3jux_A 496 KKGIPHQVLNAKYHEKEAEIVAKAGQ--KG--M-VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGR 570 (822)
T ss_dssp TTTCCCEEECSCHHHHHHHHHHHHHS--TT--C-EEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTT
T ss_pred HCCCCEEEeeCCchHHHHHHHHhCCC--CC--e-EEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCc
Confidence 34788888999865444444444554 22 2 566778899999887 67799999999999999999999
Q ss_pred h
Q psy10684 283 T 283 (288)
Q Consensus 283 a 283 (288)
+
T Consensus 571 T 571 (822)
T 3jux_A 571 A 571 (822)
T ss_dssp S
T ss_pred c
Confidence 7
No 139
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=86.68 E-value=0.3 Score=46.29 Aligned_cols=63 Identities=17% Similarity=0.100 Sum_probs=46.7
Q ss_pred hhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceE--------------------EEeCCCCC
Q psy10684 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVV--------------------VLYDSDWN 272 (288)
Q Consensus 213 gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v--------------------~~~d~~wn 272 (288)
++....++| ++|.+.+++|. +.... +|+++.+.+.|+|+. .++| +.+|++-+
T Consensus 379 g~~v~~lhg----~~R~~~l~~F~--~g~~~-VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s 450 (618)
T 2whx_A 379 GKRVIQLSR----KTFDTEYPKTK--LTDWD-FVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVT 450 (618)
T ss_dssp TCCEEEECT----TTHHHHTTHHH--HSCCS-EEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECC
T ss_pred CCcEEEECh----HHHHHHHHhhc--CCCcE-EEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCC
Confidence 556666776 47888999997 33444 456779999999995 8888 44555556
Q ss_pred hhhhhhhhhhh
Q psy10684 273 PQMDLQAMVRT 283 (288)
Q Consensus 273 p~~~~Qa~~Ra 283 (288)
+..-.|.++||
T Consensus 451 ~~~yiQR~GRa 461 (618)
T 2whx_A 451 PASAAQRRGRI 461 (618)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHhcccc
Confidence 66677999997
No 140
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=84.67 E-value=0.63 Score=45.43 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=55.0
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcccc-----------------------------
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATA----------------------------- 261 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a----------------------------- 261 (288)
..|+.+..+.|+....+|..+..+|+ . . . .++++..+|=|++....
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr-~-G--~-VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGY-P-A--A-VTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRH 537 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTS-T-T--C-EEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCC-C-C--e-EEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhh
Confidence 45899999999987666766667776 2 2 3 55677888899888753
Q ss_pred --------ceEEEeCCCCChhhhhhhhhhh
Q psy10684 262 --------DVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 262 --------~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.+||.+|.+-++-.+.|.++|+
T Consensus 538 ~~V~~~GGl~VI~te~pes~riy~qr~GRT 567 (853)
T 2fsf_A 538 DAVLEAGGLHIIGTERHESRRIDNQLRGRS 567 (853)
T ss_dssp HHHHHTTSEEEEESSCCSSHHHHHHHHTTS
T ss_pred hHHHhcCCcEEEEccCCCCHHHHHhhcccc
Confidence 6999999999999999999998
No 141
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=83.73 E-value=4.9 Score=28.46 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=41.9
Q ss_pred EEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 77 VLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 77 viIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.++||+-+..+..+....+..|+..+.+.+....+.|.+.++.|.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefe 49 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFE 49 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999997
No 142
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=78.81 E-value=21 Score=32.91 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=61.3
Q ss_pred HHHHHHHHHHH-hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCC-CCHHHHHHHHHhhcCCCCCeeEEEEec--cc
Q psy10684 61 VVLDKLLPKLK-AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQ-TAHEDRQRQINDFNMEGSDIFIFMLST--RA 136 (288)
Q Consensus 61 ~~l~~ll~~~~-~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~-~~~~~R~~~i~~F~~~~~~~~vll~s~--~~ 136 (288)
..+.+.|.++. ..+..++||..+-..++.+... .+.+ +...|. ++ +.+.++.|+.. ++ .| |+++ ..
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~-v~~q~~~~~---~~~~~~~~~~~-~~-~v-l~~v~gg~ 448 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLP-KYVESEDSS---VEDLYSAISAN-NK-VL-IGSVGKGK 448 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSS-EEECCSSCC---HHHHHHHTTSS-SS-CE-EEEESSCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCc-EEEcCCCCC---HHHHHHHHHhc-CC-eE-EEEEecce
Confidence 45555555433 3456888888888888877752 3433 333443 33 45678888622 33 34 5554 78
Q ss_pred cccccccc-----ccceeEEecCCCCcchhhhhhHHH
Q psy10684 137 GGLGINLA-----TADVVVLYDSDWNPQMDLQAMVRE 168 (288)
Q Consensus 137 ~~~Glnl~-----~a~~vi~~d~~wnp~~~~Qa~~R~ 168 (288)
-++|+|++ .+..||+...|+-+. ......|.
T Consensus 449 ~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~ 484 (551)
T 3crv_A 449 LAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILA 484 (551)
T ss_dssp SCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHH
T ss_pred ecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHH
Confidence 99999999 478999999888555 33333343
No 143
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=78.57 E-value=14 Score=25.94 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=43.4
Q ss_pred HHHHHHHHhCCCeEEEEec------chHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 64 DKLLPKLKAQESRVLIFSQ------MTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 64 ~~ll~~~~~~~~kviIFs~------~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
.+.++.+.. ..+|+||+. +...+......|...|+++..++=....+.+..+.+.. +...+.++++
T Consensus 8 ~~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~--g~~tvP~ifi 79 (109)
T 3ipz_A 8 KDTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYS--NWPTFPQLYI 79 (109)
T ss_dssp HHHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH--TCSSSCEEEE
T ss_pred HHHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHH--CCCCCCeEEE
Confidence 445555443 468999998 68889999999999999888776544545555444433 2344444443
No 144
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=78.22 E-value=12 Score=25.87 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCeEEEEe------cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 64 DKLLPKLKAQESRVLIFS------QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 64 ~~ll~~~~~~~~kviIFs------~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
.+.++.+.. ..+++||+ .+...+..+...|...++++..++=......+..+...+. ...+.+++
T Consensus 7 ~~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g--~~~vP~v~ 77 (105)
T 2yan_A 7 EERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSN--WPTYPQLY 77 (105)
T ss_dssp HHHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHT--CCSSCEEE
T ss_pred HHHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHC--CCCCCeEE
Confidence 344444444 34799998 5778899999999999999888877666666666655553 34444433
No 145
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=77.66 E-value=3.5 Score=29.89 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCC-CeEEEEe-cchHHHHHHHHHHhhcCcEEEEeeCCCC
Q psy10684 61 VVLDKLLPKLKAQE-SRVLIFS-QMTRMLDILEDYCYWRGFKYCRLDGQTA 109 (288)
Q Consensus 61 ~~l~~ll~~~~~~~-~kviIFs-~~~~~~~~l~~~l~~~~~~~~~~~G~~~ 109 (288)
..+...+..+ ..+ .++|++| ............|...|+++..+.|++.
T Consensus 76 ~~~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 76 KDIYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 4444455444 345 7999999 4666667788889999998888999874
No 146
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=76.99 E-value=1.4 Score=43.23 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=53.6
Q ss_pred cchhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCcccc-----------------------------
Q psy10684 211 EDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATA----------------------------- 261 (288)
Q Consensus 211 ~~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a----------------------------- 261 (288)
..|+.+..+.|+....++..+..+|+ .. .| ++++.-+|=|++....
T Consensus 482 ~~Gi~~~vLnak~~~rEa~iia~agr--~G--~V-tIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (922)
T 1nkt_A 482 KRRIPHNVLNAKYHEQEATIIAVAGR--RG--GV-TVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAW 556 (922)
T ss_dssp HTTCCCEEECSSCHHHHHHHHHTTTS--TT--CE-EEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCC--CC--eE-EEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHH
Confidence 45899999999987666655556666 22 34 6677888899877753
Q ss_pred -----------------------ceEEEeCCCCChhhhhhhhhhh
Q psy10684 262 -----------------------DVVVLYDSDWNPQMDLQAMVRT 283 (288)
Q Consensus 262 -----------------------~~v~~~d~~wnp~~~~Qa~~Ra 283 (288)
.+||.+|.+-++-.+.|.++|+
T Consensus 557 ~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRT 601 (922)
T 1nkt_A 557 HSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRS 601 (922)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhccc
Confidence 5999999999999999999998
No 147
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=76.32 E-value=15 Score=25.91 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCeEEEEe------cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 64 DKLLPKLKAQESRVLIFS------QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 64 ~~ll~~~~~~~~kviIFs------~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
.+.++.+.. ..+|+||+ .+...+......|...|+++..++=....+.|..+.+ +. +...+.++.+
T Consensus 6 ~~~v~~~i~-~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~-~~-g~~tvP~ifi 77 (111)
T 3zyw_A 6 NLRLKKLTH-AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA-YS-SWPTYPQLYV 77 (111)
T ss_dssp HHHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH-HH-TCCSSCEEEE
T ss_pred HHHHHHHHh-cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH-HH-CCCCCCEEEE
Confidence 344444433 46999999 5778899999999999998888765555555555443 43 2344444343
No 148
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=74.11 E-value=22 Score=25.52 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCeEEEEec------chHHHHHHHHHHhhcCcE---EEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 64 DKLLPKLKAQESRVLIFSQ------MTRMLDILEDYCYWRGFK---YCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 64 ~~ll~~~~~~~~kviIFs~------~~~~~~~l~~~l~~~~~~---~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
.+.++.+.. ..+|+||+. +...+......|...|++ +..++=....+.|..+.. +. +...+..+.+
T Consensus 6 ~~~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~-~s-g~~tvP~vfI 80 (121)
T 3gx8_A 6 RKAIEDAIE-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE-FS-EWPTIPQLYV 80 (121)
T ss_dssp HHHHHHHHH-SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHH-HH-TCCSSCEEEE
T ss_pred HHHHHHHhc-cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHH-Hh-CCCCCCeEEE
Confidence 344444443 368999998 678899999999999998 777776555555555444 33 3344444333
No 149
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=72.83 E-value=17 Score=25.34 Aligned_cols=98 Identities=8% Similarity=-0.121 Sum_probs=53.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCC--CCCeeEEEEeccccccccccccccee
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNME--GSDIFIFMLSTRAGGLGINLATADVV 149 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~--~~~~~vll~s~~~~~~Glnl~~a~~v 149 (288)
..+..+..+.+..+.++.+ ....+..+.++-.++...-.+.++..+.. .+.+.+++++......-.....+.-.
T Consensus 25 ~~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~ 100 (127)
T 3i42_A 25 MLGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFD 100 (127)
T ss_dssp HTTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCS
T ss_pred HcCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhH
Confidence 3455666666554444443 44567788888777665566666666533 45667777765443222111111122
Q ss_pred EEecCCCCcchhhhhhHHHHHHhh
Q psy10684 150 VLYDSDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 150 i~~d~~wnp~~~~Qa~~R~~R~Gq 173 (288)
-++.-|.++....+++.+..+-+.
T Consensus 101 ~~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 101 FYLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp EEEESSCCHHHHHHHHHHHC----
T ss_pred HheeCCCCHHHHHHHHHHhhccCC
Confidence 245567788777777776655443
No 150
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=72.58 E-value=12 Score=25.53 Aligned_cols=57 Identities=7% Similarity=-0.068 Sum_probs=41.3
Q ss_pred CeEEEEecch-HHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 75 SRVLIFSQMT-RMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 75 ~kviIFs~~~-~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
.+|.||+... ..+......|...|++|..++=....+.++...+.-. +...+.++++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~-G~~tVP~I~i 61 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNG-GNRTVPTVKF 61 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSS-SSSCSCEEEE
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcC-CCCEeCEEEE
Confidence 4688886543 4688999999999999999988888887877666543 3444554443
No 151
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=69.02 E-value=2.5 Score=40.34 Aligned_cols=61 Identities=13% Similarity=-0.122 Sum_probs=44.6
Q ss_pred chhhhcccCCCccccchhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEE----------eC-----------CC
Q psy10684 212 DRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL----------YD-----------SD 270 (288)
Q Consensus 212 ~gi~~~~l~G~~~~~~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~----------~d-----------~~ 270 (288)
.++....++|+++.++| . .. .. -+|+++.+.+.|+|+. .+.||. || .+
T Consensus 419 ~g~~v~~lHG~l~q~er-------~-~~-~~-~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P 487 (666)
T 3o8b_A 419 LGINAVAYYRGLDVSVI-------P-TI-GD-VVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVP 487 (666)
T ss_dssp TTCCEEEECTTSCGGGS-------C-SS-SC-EEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEE
T ss_pred CCCcEEEecCCCCHHHH-------H-hC-CC-cEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCc
Confidence 36777889999987753 2 22 22 4667889999999985 898883 44 45
Q ss_pred CChhhhhhhhhhh
Q psy10684 271 WNPQMDLQAMVRT 283 (288)
Q Consensus 271 wnp~~~~Qa~~Ra 283 (288)
-++..-.|.++||
T Consensus 488 ~s~~syiQRiGRt 500 (666)
T 3o8b_A 488 QDAVSRSQRRGRT 500 (666)
T ss_dssp CBHHHHHHHHTTB
T ss_pred CCHHHHHHHhccC
Confidence 5667778999997
No 152
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=68.35 E-value=20 Score=26.35 Aligned_cols=66 Identities=9% Similarity=-0.005 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCeEEEEec------chHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 64 DKLLPKLKAQESRVLIFSQ------MTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 64 ~~ll~~~~~~~~kviIFs~------~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
.+.++.+... .+++||+. +...+..+...|...++++..++=....+.+..+..... ...+.++++
T Consensus 25 ~~~v~~~i~~-~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G--~~tvP~VfI 96 (135)
T 2wci_A 25 IEKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYAN--WPTFPQLWV 96 (135)
T ss_dssp HHHHHHHHHH-CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHT--CCSSCEEEE
T ss_pred HHHHHHHhcc-CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHC--CCCcCEEEE
Confidence 3344443332 48999977 677899999999999999888876666666665554443 344444333
No 153
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=68.31 E-value=4.1 Score=28.64 Aligned_cols=38 Identities=5% Similarity=0.141 Sum_probs=32.5
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~ 109 (288)
..+.++|+||............|...|+++..+.|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 34678999999988888888999999998889999873
No 154
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=67.57 E-value=4.3 Score=40.87 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=43.8
Q ss_pred chhHHHhhcccCCCCeeEEEEeecccccCCCccccceEEEeCCCCChhhhhhhhhhhh
Q psy10684 227 DRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRTV 284 (288)
Q Consensus 227 ~R~~~i~~f~~~~~~~~v~l~s~~agg~glnl~~a~~v~~~d~~wnp~~~~Qa~~Ra~ 284 (288)
+|..++++|. +..+.++++ +..-..|.+.... +++.+|.+-.+..--||++|+-
T Consensus 637 ~R~~i~~~Fk--~g~i~ILIv-vd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtn 690 (1038)
T 2w00_A 637 YYRDLAQRVK--NQDIDLLIV-VGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTN 690 (1038)
T ss_dssp HHHHHHHHHH--TTSSSEEEE-SSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHH--cCCCeEEEE-cchHHhCcCcccc-cEEEEccCCCccceeehhhccC
Confidence 5888899998 455666554 4666799999999 6778889999999999999973
No 155
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=67.05 E-value=20 Score=24.85 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=36.6
Q ss_pred CCeEEEEec------chHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhh
Q psy10684 74 ESRVLIFSQ------MTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDF 120 (288)
Q Consensus 74 ~~kviIFs~------~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F 120 (288)
..+++||+. +...+..+...|...++++..++=....+.+..+....
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 457999987 55678899999999999999998777666666665544
No 156
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=65.92 E-value=33 Score=24.43 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=39.2
Q ss_pred CeEEEEec------chHHHHHHHHHHhhcCcE-EEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEE
Q psy10684 75 SRVLIFSQ------MTRMLDILEDYCYWRGFK-YCRLDGQTAHEDRQRQINDFNMEGSDIFIFML 132 (288)
Q Consensus 75 ~kviIFs~------~~~~~~~l~~~l~~~~~~-~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~ 132 (288)
.+|+||+. +...+....+.|...+++ +..++=....+.|+.+. .+. +...+.++++
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~-~~t-g~~tvP~vfI 82 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIK-DYS-NWPTIPQVYL 82 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHH-HHH-TCCSSCEEEE
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHH-HHh-CCCCcCeEEE
Confidence 58999998 688899999999999995 87777655555555543 443 3344444443
No 157
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=64.63 E-value=43 Score=26.43 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=50.1
Q ss_pred ccCchHHH-HHHHHHHHHh--CCCeEEEEecchHHHHHHHHHHhhc-----CcEEEEeeCCCCHHHHHHHHHhhcCCCCC
Q psy10684 55 FNSGKMVV-LDKLLPKLKA--QESRVLIFSQMTRMLDILEDYCYWR-----GFKYCRLDGQTAHEDRQRQINDFNMEGSD 126 (288)
Q Consensus 55 ~~s~K~~~-l~~ll~~~~~--~~~kviIFs~~~~~~~~l~~~l~~~-----~~~~~~~~G~~~~~~R~~~i~~F~~~~~~ 126 (288)
..|+|... ++.++..+.. .+.++||.+.....+..+.+.+... ++.+..++|+.+..++...+ . +
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~----~ 142 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K----K 142 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T----S
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c----C
Confidence 36899876 5555655433 3468999999988888777766653 67888999998876654432 2 3
Q ss_pred eeEEEEecc
Q psy10684 127 IFIFMLSTR 135 (288)
Q Consensus 127 ~~vll~s~~ 135 (288)
..|++.+..
T Consensus 143 ~~Iiv~Tp~ 151 (230)
T 2oxc_A 143 CHIAVGSPG 151 (230)
T ss_dssp CSEEEECHH
T ss_pred CCEEEECHH
Confidence 455555544
No 158
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=64.56 E-value=5.5 Score=27.85 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=31.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~ 108 (288)
..+.+++++|............|...|++.+.+.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 3467899999988777788899999999998888876
No 159
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=64.18 E-value=43 Score=25.11 Aligned_cols=41 Identities=17% Similarity=0.117 Sum_probs=36.6
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhc
Q psy10684 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWR 97 (288)
Q Consensus 57 s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~ 97 (288)
..+.....+++.+....|.+++|.|...+.++.|-+.|...
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~ 62 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWAR 62 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCC
Confidence 34778888999998899999999999999999999999875
No 160
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=63.50 E-value=7.3 Score=26.74 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=31.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~ 108 (288)
..+.++|++|............|...|+++..+.|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 3467899999998888888899999999888899876
No 161
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=62.58 E-value=13 Score=24.41 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=31.5
Q ss_pred HHHHHHHH-HhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC
Q psy10684 63 LDKLLPKL-KAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT 108 (288)
Q Consensus 63 l~~ll~~~-~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~ 108 (288)
+.+.+..+ ...+.+++++|............|...|++.+.+-|++
T Consensus 29 l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~ 75 (85)
T 2jtq_A 29 VKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGL 75 (85)
T ss_dssp HHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEET
T ss_pred HHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCH
Confidence 33444444 24467899999988777888889999898633333665
No 162
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=61.78 E-value=37 Score=23.57 Aligned_cols=97 Identities=10% Similarity=-0.113 Sum_probs=55.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCC--CCCeeEEEEeccccccccccccccee
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNME--GSDIFIFMLSTRAGGLGINLATADVV 149 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~--~~~~~vll~s~~~~~~Glnl~~a~~v 149 (288)
..+..+..+....+.+..+ ....+..+.++-.++...-.+.++..+.. .+.+.+++++......-.....+.-.
T Consensus 25 ~~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~ 100 (133)
T 3nhm_A 25 SGEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPD 100 (133)
T ss_dssp TTTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCS
T ss_pred hCCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCc
Confidence 3566777666655554443 44567888888777666666666666532 34667777776432221222222222
Q ss_pred EEecCCCCcchhhhhhHHHHHHh
Q psy10684 150 VLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 150 i~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
-++.-|+++....+++.++-+-.
T Consensus 101 ~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 101 AYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHH
T ss_pred eEEeccCCHHHHHHHHHHHHhhh
Confidence 24456788888887777765443
No 163
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=60.70 E-value=7.4 Score=26.84 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=31.5
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~ 108 (288)
..+.++|++|............|...|++...+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 3467899999988778888899999999988898876
No 164
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=60.65 E-value=57 Score=25.33 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=55.7
Q ss_pred cCchHHHHHHHH-HHHHhC--CCeEEEEecchHHHHHHHHHHhhc-----CcEEEEeeCCCCHHHHHHHHHhhcCCCCCe
Q psy10684 56 NSGKMVVLDKLL-PKLKAQ--ESRVLIFSQMTRMLDILEDYCYWR-----GFKYCRLDGQTAHEDRQRQINDFNMEGSDI 127 (288)
Q Consensus 56 ~s~K~~~l~~ll-~~~~~~--~~kviIFs~~~~~~~~l~~~l~~~-----~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~ 127 (288)
.++|.....-.+ ..+... +.++||.+.....+..+.+.++.. ++.+..++|+.+..++.+.+.. ...
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-----~~~ 135 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK-----NCP 135 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH-----SCC
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc-----CCC
Confidence 588987544443 333222 348999999988888777666553 7889999999887666554432 223
Q ss_pred eEEEEecccc-----cccccccccceeEE
Q psy10684 128 FIFMLSTRAG-----GLGINLATADVVVL 151 (288)
Q Consensus 128 ~vll~s~~~~-----~~Glnl~~a~~vi~ 151 (288)
.|++.+.... ...+++...+.+|+
T Consensus 136 ~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 136 HIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 4555554322 12344555555554
No 165
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=60.50 E-value=38 Score=23.48 Aligned_cols=93 Identities=13% Similarity=0.059 Sum_probs=52.1
Q ss_pred CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccc-----ccc-cccccc
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGG-----LGI-NLATAD 147 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~-----~Gl-nl~~a~ 147 (288)
+..+..+......+ ..+... +..+.++-.++...-.+.++..+...+.+.+++++..... ..+ ....+.
T Consensus 27 ~~~v~~~~~~~~~~----~~~~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 27 FGNVEAFQHPRAFL----TLSLNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp CSCEEEESCHHHHT----TSCCCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred cceeeeecCHHHHH----HhhccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCC
Confidence 44555555433322 233344 7888888888777777777777655566777777654331 110 111222
Q ss_pred eeEEecCCCCcchhhhhhHHHHHH
Q psy10684 148 VVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 148 ~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
-.-++.-|.++....+++.++..-
T Consensus 102 ~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 102 VINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp EEEEEESSCCHHHHHHHHHHHSCC
T ss_pred cceeeCCCCCHHHHHHHHHHHHhh
Confidence 233445677777777777665443
No 166
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=59.85 E-value=42 Score=23.61 Aligned_cols=95 Identities=3% Similarity=0.019 Sum_probs=45.8
Q ss_pred CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCH--HHHHHHHHhhcCCCCCeeEEEEeccccccc-ccccccceeE
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAH--EDRQRQINDFNMEGSDIFIFMLSTRAGGLG-INLATADVVV 150 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~--~~R~~~i~~F~~~~~~~~vll~s~~~~~~G-lnl~~a~~vi 150 (288)
+..+..+....+.++ .+....+..+.++-.++. ..-.+.++..+...+.+.+++++......- .....+.-.-
T Consensus 30 g~~v~~~~~~~~a~~----~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 105 (136)
T 3kto_A 30 DVTIQCFASAESFMR----QQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAAD 105 (136)
T ss_dssp SSEEEEESSHHHHTT----SCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHTTCSE
T ss_pred CcEEEEeCCHHHHHH----HHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHcChHH
Confidence 455554443333222 233345666677766665 555556666654445566666664332110 0011111112
Q ss_pred EecCCCCcchhhhhhHHHHHHh
Q psy10684 151 LYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 151 ~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
++.-|+++....+++.++.+-+
T Consensus 106 ~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 106 FIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp EEESSBCHHHHHHHHHHHHHHH
T ss_pred heeCCCCHHHHHHHHHHHHhcc
Confidence 3345566766666666665544
No 167
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=58.65 E-value=47 Score=23.77 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=32.5
Q ss_pred CeEEEEec------chHHHHHHHHHHhhcCc-EEEEeeCCCCHHHHHHHHHhhc
Q psy10684 75 SRVLIFSQ------MTRMLDILEDYCYWRGF-KYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 75 ~kviIFs~------~~~~~~~l~~~l~~~~~-~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.+|+||+. +..++....+.|...|+ ++..++=....+-|+.+ ..+.
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l-~~~s 72 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGI-KDYS 72 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHH-HHHH
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHH-HHhc
Confidence 69999976 35678888888988887 46777655555555544 4554
No 168
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=57.60 E-value=11 Score=26.08 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=30.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~ 108 (288)
..+..+|++|............|...|+. +..+.|++
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 45678999999888888888999999995 77788876
No 169
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=56.93 E-value=52 Score=23.67 Aligned_cols=98 Identities=10% Similarity=-0.029 Sum_probs=50.0
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc-cccccccceeE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL-GINLATADVVV 150 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~-Glnl~~a~~vi 150 (288)
..+..+..++...+.+ ..+....+..+.++-.++...-.+.+...+...+.+.+++++...... -.....+.-.-
T Consensus 25 ~~g~~v~~~~~~~~a~----~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~ 100 (155)
T 1qkk_A 25 LAGFTVSSFASATEAL----AGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYD 100 (155)
T ss_dssp HTTCEEEEESCHHHHH----HTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCE
T ss_pred HcCcEEEEECCHHHHH----HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCe
Confidence 3456666555433333 333445667777776665434444444444233456666666443211 11111112222
Q ss_pred EecCCCCcchhhhhhHHHHHHhh
Q psy10684 151 LYDSDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 151 ~~d~~wnp~~~~Qa~~R~~R~Gq 173 (288)
++..|.++....+++.++.+..+
T Consensus 101 ~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 101 FIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHH
Confidence 34557788888887777765433
No 170
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=56.27 E-value=41 Score=22.38 Aligned_cols=46 Identities=11% Similarity=-0.002 Sum_probs=34.3
Q ss_pred eEEEEecc-hHHH------HHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 76 RVLIFSQM-TRML------DILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 76 kviIFs~~-~~~~------~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
+++||+.. ...+ ......|...|+++..++=....+.|..+.+...
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 67777653 3446 6888899999999988888777777777666653
No 171
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=55.93 E-value=75 Score=25.20 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=44.2
Q ss_pred ccCchHHH-HHHHHHHHHh-------CCCeEEEEecchHHHHHHHHHHh----hcCcEEEEeeCCCCHHHHHHHHH
Q psy10684 55 FNSGKMVV-LDKLLPKLKA-------QESRVLIFSQMTRMLDILEDYCY----WRGFKYCRLDGQTAHEDRQRQIN 118 (288)
Q Consensus 55 ~~s~K~~~-l~~ll~~~~~-------~~~kviIFs~~~~~~~~l~~~l~----~~~~~~~~~~G~~~~~~R~~~i~ 118 (288)
..|+|..+ ++-++..+.. .+.++||.+.....+..+...+. ..++....++|+.+.......+.
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 150 (242)
T 3fe2_A 75 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE 150 (242)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc
Confidence 36899865 4555555442 35679999999887776655544 34889999999998776655443
No 172
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=55.87 E-value=9.7 Score=25.72 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=29.9
Q ss_pred CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCC
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTA 109 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~ 109 (288)
.+++++|+...........|...|+++..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888888899999998777888763
No 173
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=55.55 E-value=79 Score=25.36 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=54.7
Q ss_pred ccCchHHH-HHHHHHHHHhC--CCeEEEEecchHHHHHHHHHHhhc----CcEEEEeeCCCCHHHHHHHHHhhcCCCCCe
Q psy10684 55 FNSGKMVV-LDKLLPKLKAQ--ESRVLIFSQMTRMLDILEDYCYWR----GFKYCRLDGQTAHEDRQRQINDFNMEGSDI 127 (288)
Q Consensus 55 ~~s~K~~~-l~~ll~~~~~~--~~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~ 127 (288)
..|+|..+ ++-++..+... +.++||.+.....+..+...+... ++.+..++|+.+..++...+. .+.
T Consensus 89 TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~ 162 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA------KKP 162 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH------TCC
T ss_pred CCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc------CCC
Confidence 36899875 44444444443 357999999988877666555443 788999999987655443332 234
Q ss_pred eEEEEecccc------cccccccccceeEE
Q psy10684 128 FIFMLSTRAG------GLGINLATADVVVL 151 (288)
Q Consensus 128 ~vll~s~~~~------~~Glnl~~a~~vi~ 151 (288)
.|++.+.... ..++++...+.+|+
T Consensus 163 ~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 163 HIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp SEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 5555554322 12345555555544
No 174
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=55.21 E-value=55 Score=25.66 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=51.1
Q ss_pred ccCchHHH-HHHHHHHHH--------hCCCeEEEEecchHHHHHHHHHHhh---cCcEEEEeeCCCCHHHHHHHHHhhcC
Q psy10684 55 FNSGKMVV-LDKLLPKLK--------AQESRVLIFSQMTRMLDILEDYCYW---RGFKYCRLDGQTAHEDRQRQINDFNM 122 (288)
Q Consensus 55 ~~s~K~~~-l~~ll~~~~--------~~~~kviIFs~~~~~~~~l~~~l~~---~~~~~~~~~G~~~~~~R~~~i~~F~~ 122 (288)
..|+|..+ ++-++..+. ..+.++||.+.....+..+...+.. .++....++|+.+...+...+ .
T Consensus 66 TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~- 141 (228)
T 3iuy_A 66 TGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S- 141 (228)
T ss_dssp TTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-
T ss_pred CCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-
Confidence 36899865 444444332 2467899999999988888877766 377888888887655443332 2
Q ss_pred CCCCeeEEEEeccccc-----ccccccccceeEE
Q psy10684 123 EGSDIFIFMLSTRAGG-----LGINLATADVVVL 151 (288)
Q Consensus 123 ~~~~~~vll~s~~~~~-----~Glnl~~a~~vi~ 151 (288)
.+..|++.+..... ..+++...+.||+
T Consensus 142 --~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 142 --KGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp --SCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred --CCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 22455555543221 2344555555544
No 175
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=54.56 E-value=77 Score=24.92 Aligned_cols=73 Identities=21% Similarity=0.178 Sum_probs=45.4
Q ss_pred cCchHHHHH-HHHHHHH------hCCCeEEEEecchHHHHHHHHHHhhc----CcEEEEeeCCCCHHHHHHHHHhhcCCC
Q psy10684 56 NSGKMVVLD-KLLPKLK------AQESRVLIFSQMTRMLDILEDYCYWR----GFKYCRLDGQTAHEDRQRQINDFNMEG 124 (288)
Q Consensus 56 ~s~K~~~l~-~ll~~~~------~~~~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~~G~~~~~~R~~~i~~F~~~~ 124 (288)
.|+|..+.. -++..+. ..+.++||.+.....+..+...+... ++.+..++|+.+.......+ .
T Consensus 72 GsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--- 145 (236)
T 2pl3_A 72 GSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---N--- 145 (236)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---T---
T ss_pred CCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---C---
Confidence 688987533 3444332 23578999999988877777666553 47888899988765543333 2
Q ss_pred CCeeEEEEecc
Q psy10684 125 SDIFIFMLSTR 135 (288)
Q Consensus 125 ~~~~vll~s~~ 135 (288)
+..|++.++.
T Consensus 146 -~~~iiv~Tp~ 155 (236)
T 2pl3_A 146 -NINILVCTPG 155 (236)
T ss_dssp -TCSEEEECHH
T ss_pred -CCCEEEECHH
Confidence 3355555544
No 176
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=53.75 E-value=48 Score=22.29 Aligned_cols=91 Identities=8% Similarity=-0.009 Sum_probs=47.4
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEe
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLY 152 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~ 152 (288)
.+..+..+.+..+.+.. +.......+.++-.++...-.+.++..+...+...+++++...... .....+...-++
T Consensus 24 ~~~~v~~~~~~~~a~~~----~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~l 98 (116)
T 3a10_A 24 EGYEIDTAENGEEALKK----FFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEYV 98 (116)
T ss_dssp TTCEEEEESSHHHHHHH----HHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEEE
T ss_pred CCCEEEEeCCHHHHHHH----HhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccceE
Confidence 45666655544444433 3445667777777665444444555554333456666666543222 222222222334
Q ss_pred cCCCCcchhhhhhHHH
Q psy10684 153 DSDWNPQMDLQAMVRE 168 (288)
Q Consensus 153 d~~wnp~~~~Qa~~R~ 168 (288)
.-|+++....+++.++
T Consensus 99 ~Kp~~~~~l~~~i~~~ 114 (116)
T 3a10_A 99 VKSFNFDELKEKVKKL 114 (116)
T ss_dssp ECCSSTHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHH
Confidence 5677777766666554
No 177
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=52.65 E-value=18 Score=26.70 Aligned_cols=38 Identities=8% Similarity=-0.049 Sum_probs=29.7
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
..+.++||||+...........|...|++ +..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 44678999999877777888899999994 888999873
No 178
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=51.75 E-value=32 Score=24.86 Aligned_cols=35 Identities=9% Similarity=0.016 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 87 LDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 87 ~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
+..+...|...|++|..++=++..+.|.+..+...
T Consensus 19 c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 19 QQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 36888999999999999999999999999998883
No 179
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=50.29 E-value=59 Score=22.36 Aligned_cols=93 Identities=11% Similarity=0.031 Sum_probs=50.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhc-CcEEEEeeCCCCH-HHHHHHHHhhcCCCCCeeEEEEeccccc----ccccccc
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWR-GFKYCRLDGQTAH-EDRQRQINDFNMEGSDIFIFMLSTRAGG----LGINLAT 145 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~-~~~~~~~~G~~~~-~~R~~~i~~F~~~~~~~~vll~s~~~~~----~Glnl~~ 145 (288)
..+..+..+.+..+.+..+ ... ....+.++-.++. ..-.+.++..+...+.+.+++++..... .++..
T Consensus 27 ~~g~~v~~~~~~~~a~~~l----~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~-- 100 (132)
T 2rdm_A 27 DAGFLVTAVSSGAKAIEML----KSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPD-- 100 (132)
T ss_dssp HTTCEEEEESSHHHHHHHH----HTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTT--
T ss_pred HcCCEEEEECCHHHHHHHH----HcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCC--
Confidence 3466776655544444333 344 5677777766653 3334445554433345667677654322 12221
Q ss_pred cceeEEecCCCCcchhhhhhHHHHHHhh
Q psy10684 146 ADVVVLYDSDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 146 a~~vi~~d~~wnp~~~~Qa~~R~~R~Gq 173 (288)
. -++..|.++....+++.++.+.+.
T Consensus 101 -~--~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 101 -S--IILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp -C--EEEESSCCHHHHHHHHHHHHHTTC
T ss_pred -c--ceEeCCCCHHHHHHHHHHHHhcCC
Confidence 1 245567788887787777765443
No 180
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=50.28 E-value=32 Score=32.36 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=45.6
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEee
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLD 105 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~ 105 (288)
.++|...+.+++..+...+.+|+|-+.+...+|.+.+.|...+.+.+++.
T Consensus 215 GTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 215 GTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 68999999999999889999999999999999999999988888888774
No 181
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=49.86 E-value=10 Score=27.24 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=30.2
Q ss_pred CCCeEEEEecchHH--HHHHHHHHhhcCcEEEEeeCCC
Q psy10684 73 QESRVLIFSQMTRM--LDILEDYCYWRGFKYCRLDGQT 108 (288)
Q Consensus 73 ~~~kviIFs~~~~~--~~~l~~~l~~~~~~~~~~~G~~ 108 (288)
.+.++|++|..... .......|...|+++..+.|++
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 46789999998766 6788889999999988888876
No 182
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=49.53 E-value=63 Score=22.48 Aligned_cols=98 Identities=8% Similarity=-0.007 Sum_probs=55.1
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccc-ccccccceeEE
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG-INLATADVVVL 151 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~G-lnl~~a~~vi~ 151 (288)
.+..+..+....+.++.+ ....+..+.++-.++...-.+.++..+...+.+.+++++......- .....+.-.-+
T Consensus 30 ~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 105 (137)
T 3hdg_A 30 HFPEVWSAGDGEEGERLF----GLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLF 105 (137)
T ss_dssp TCSCEEEESSHHHHHHHH----HHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEE
T ss_pred cCcEEEEECCHHHHHHHH----hccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCccee
Confidence 455666666655555444 3346677888877766555666666664455666766664432111 11111222234
Q ss_pred ecCCCCcchhhhhhHHHHHHhhh
Q psy10684 152 YDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 152 ~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
+.-|.++....+++.++.+-...
T Consensus 106 l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 106 LPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHHHhc
Confidence 55677787777777777665433
No 183
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=49.32 E-value=22 Score=24.53 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 63 LDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 63 l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
+...+..+ ..+.++|++|............|...|++ +..+.|++.
T Consensus 48 l~~~~~~l-~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 48 LGAFMRDN-DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHHS-CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHHhc-CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 34444442 45678999999887788888899999985 778888763
No 184
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=49.26 E-value=16 Score=27.07 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=30.2
Q ss_pred CCCeEEEEecch--HHHHHHHHHHhhcCcEEEEeeCCC
Q psy10684 73 QESRVLIFSQMT--RMLDILEDYCYWRGFKYCRLDGQT 108 (288)
Q Consensus 73 ~~~kviIFs~~~--~~~~~l~~~l~~~~~~~~~~~G~~ 108 (288)
.+.++||||... .........|...|+++..+.|++
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~ 108 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGI 108 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcH
Confidence 467899999987 466778889999999988899987
No 185
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=47.02 E-value=15 Score=26.78 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=31.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~ 108 (288)
..+.++||||+...........|...|+. +..+.|++
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 45678999999988777888899999996 88888986
No 186
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.97 E-value=64 Score=22.37 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=35.1
Q ss_pred CeEEEEecc-hHHHH------HHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhh
Q psy10684 75 SRVLIFSQM-TRMLD------ILEDYCYWRGFKYCRLDGQTAHEDRQRQINDF 120 (288)
Q Consensus 75 ~kviIFs~~-~~~~~------~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F 120 (288)
.+++||+.. ...+. .+...|...++++..++=....+.|+.+.+.+
T Consensus 8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 468888643 34466 68889999999999998888777787777765
No 187
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=46.06 E-value=67 Score=21.76 Aligned_cols=47 Identities=9% Similarity=0.069 Sum_probs=35.4
Q ss_pred CCeEEEEe-cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhh
Q psy10684 74 ESRVLIFS-QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDF 120 (288)
Q Consensus 74 ~~kviIFs-~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F 120 (288)
..+++||+ .+...+..+...|...++++..++=....+.++...+..
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~ 62 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARA 62 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHh
Confidence 45788885 566678999999999999998888777766666554443
No 188
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=45.90 E-value=21 Score=24.85 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=31.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~ 109 (288)
..+.++|++|............|...|+....+.|++.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999999988888888899999986578889873
No 189
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=44.78 E-value=65 Score=21.29 Aligned_cols=59 Identities=7% Similarity=-0.039 Sum_probs=28.4
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCC--CCeeEEEEecc
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEG--SDIFIFMLSTR 135 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~--~~~~vll~s~~ 135 (288)
.+..+..+....+.+..+ .......+.++-.++...-.+.++..+... +.+.+++++..
T Consensus 24 ~g~~v~~~~~~~~~~~~l----~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 24 AGFKVIWLVDGSTALDQL----DLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp TTCEEEEESCHHHHHHHH----HHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS
T ss_pred CCcEEEEecCHHHHHHHH----HhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC
Confidence 455666555444444433 333456666666554433344444444221 34455555543
No 190
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=44.30 E-value=84 Score=22.38 Aligned_cols=97 Identities=12% Similarity=-0.002 Sum_probs=51.8
Q ss_pred eEEEEecchHHHHHHHHH-----HhhcCcEEEEeeCCCCHHHHHHHHHhhcC--CCCCeeEEEEecccccccc-cccccc
Q psy10684 76 RVLIFSQMTRMLDILEDY-----CYWRGFKYCRLDGQTAHEDRQRQINDFNM--EGSDIFIFMLSTRAGGLGI-NLATAD 147 (288)
Q Consensus 76 kviIFs~~~~~~~~l~~~-----l~~~~~~~~~~~G~~~~~~R~~~i~~F~~--~~~~~~vll~s~~~~~~Gl-nl~~a~ 147 (288)
.+..+....+.++.+... .....+..+.++-.++...-.+.++..+. ..+.+.+++++......-. ....+.
T Consensus 32 ~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g 111 (152)
T 3heb_A 32 EIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLG 111 (152)
T ss_dssp CEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTT
T ss_pred eEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCC
Confidence 566666655555544311 12446777888877766555566666653 3355667676654322111 111111
Q ss_pred eeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 148 VVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 148 ~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
-.-++.-|.++....+++.++.+.-
T Consensus 112 ~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 112 ANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp CSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 2223445777777777777765543
No 191
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=44.20 E-value=80 Score=22.11 Aligned_cols=97 Identities=11% Similarity=0.025 Sum_probs=49.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccc-ccccccceeE
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG-INLATADVVV 150 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~G-lnl~~a~~vi 150 (288)
..+..+..++...+.++.+.. ....+..+.++-.++...-.+.++..+...+.+.+++++......- .....+.-.-
T Consensus 25 ~~g~~v~~~~~~~~a~~~~~~--~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~ 102 (143)
T 3jte_A 25 IDGNEVLTASSSTEGLRIFTE--NCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFE 102 (143)
T ss_dssp HTTCEEEEESSHHHHHHHHHH--TTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSE
T ss_pred hCCceEEEeCCHHHHHHHHHh--CCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcce
Confidence 345666666655555444432 1345677777776665444455555543345666766665432110 0111111122
Q ss_pred EecCCCCcchhhhhhHHHHH
Q psy10684 151 LYDSDWNPQMDLQAMVREAK 170 (288)
Q Consensus 151 ~~d~~wnp~~~~Qa~~R~~R 170 (288)
++.-|.++....+++.++.+
T Consensus 103 ~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 103 YLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp EEESSCCHHHHHHHHHHHHH
T ss_pred eEeCCCCHHHHHHHHHHHHH
Confidence 33456677666666666544
No 192
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=43.82 E-value=80 Score=22.01 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=57.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcC--CCCCeeEEEEecccccccc--cccccc
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNM--EGSDIFIFMLSTRAGGLGI--NLATAD 147 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~--~~~~~~vll~s~~~~~~Gl--nl~~a~ 147 (288)
..+..+..+....+.++.+ ....+..+.++-.++...-.+.++..+. ..+.+.+++++......-. ....+.
T Consensus 28 ~~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g 103 (140)
T 3grc_A 28 KGGFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLA 103 (140)
T ss_dssp HTTCEEEEECSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTC
T ss_pred HCCCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcC
Confidence 3466776666555444443 4566788888877776666667777764 3456777777754322111 122222
Q ss_pred eeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 148 VVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 148 ~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
-.-++.-|.++....+++.++.+-+
T Consensus 104 ~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 104 VSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp CCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 2334456778888777777765544
No 193
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=43.45 E-value=29 Score=25.06 Aligned_cols=38 Identities=8% Similarity=0.274 Sum_probs=30.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCc-EEEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGF-KYCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~-~~~~~~G~~~ 109 (288)
..+..+|++|+.-..-......|...|+ ++..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3467899999988777778888998999 4778889883
No 194
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=42.80 E-value=22 Score=26.22 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=30.5
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~ 108 (288)
..+..+|+||............|...|+. +..+.|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 45678999999888788888999999985 67788876
No 195
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=42.48 E-value=17 Score=26.26 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=31.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
..+.++|++|............|...|++ +..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 45678999999887777888889888985 778899874
No 196
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=42.42 E-value=64 Score=30.20 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=43.9
Q ss_pred cCchHHHHHHHHHHHHh-CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeC
Q psy10684 56 NSGKMVVLDKLLPKLKA-QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDG 106 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~-~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G 106 (288)
.++|...+..++..+.. .+.++++.+.....++.+...+...|++.+++.+
T Consensus 205 GTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~ 256 (624)
T 2gk6_A 205 GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA 256 (624)
T ss_dssp TSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeecc
Confidence 68999999999888765 6789999999999999999999888888777754
No 197
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=41.78 E-value=78 Score=22.13 Aligned_cols=91 Identities=14% Similarity=0.012 Sum_probs=43.2
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccc-cc--ccccee
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGI-NL--ATADVV 149 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Gl-nl--~~a~~v 149 (288)
.+..+..+.+..+.++ .+....+..+.++- ++...-.+.+...+...+.+.+++++......-. .. .++..
T Consensus 27 ~g~~v~~~~~~~~a~~----~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~- 100 (142)
T 2qxy_A 27 DGFNVIWAKNEQEAFT----FLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVD- 100 (142)
T ss_dssp GTCEEEEESSHHHHHH----HHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSC-
T ss_pred CCCEEEEECCHHHHHH----HHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcce-
Confidence 3556665544433333 33445667777776 6554545555555433345666666543221100 00 01222
Q ss_pred EEecCCCCcchhhhhhHHHHH
Q psy10684 150 VLYDSDWNPQMDLQAMVREAK 170 (288)
Q Consensus 150 i~~d~~wnp~~~~Qa~~R~~R 170 (288)
++..|.++....+++.++.+
T Consensus 101 -~l~kP~~~~~l~~~i~~~~~ 120 (142)
T 2qxy_A 101 -YILKPFRLDYLLERVKKIIS 120 (142)
T ss_dssp -EEESSCCHHHHHHHHHHHHH
T ss_pred -eEeCCCCHHHHHHHHHHHHh
Confidence 23345566665565555543
No 198
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=41.56 E-value=17 Score=26.61 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=31.0
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCc-EEEEeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGF-KYCRLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~-~~~~~~G~~ 108 (288)
..+.++||+|............|...|+ ++..+.|++
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 3467899999988877788889999999 577889987
No 199
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=40.57 E-value=80 Score=24.47 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=36.8
Q ss_pred cCchHHH-HHHHHHHHHh--CCCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHH
Q psy10684 56 NSGKMVV-LDKLLPKLKA--QESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDR 113 (288)
Q Consensus 56 ~s~K~~~-l~~ll~~~~~--~~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R 113 (288)
.|+|... ++.++..+.. .+.++||.+.....+..+...+.. .++....++|+.+..+.
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 125 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHH
Confidence 6899976 5566655433 346899999998887777665544 37888889998765443
No 200
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=40.42 E-value=87 Score=21.47 Aligned_cols=45 Identities=16% Similarity=-0.121 Sum_probs=22.6
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.+..+..+....+.+..+ .......+.++-.++...-.+.++..+
T Consensus 29 ~g~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~ 73 (132)
T 3lte_A 29 DHWQVEIAHNGFDAGIKL----STFEPAIMTLDLSMPKLDGLDVIRSLR 73 (132)
T ss_dssp TTCEEEEESSHHHHHHHH----HHTCCSEEEEESCBTTBCHHHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHH----HhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 345555554443333332 334556666666655544455555554
No 201
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=39.74 E-value=96 Score=21.78 Aligned_cols=100 Identities=11% Similarity=-0.017 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcC--CCCCeeEEEEecccccc
Q psy10684 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNM--EGSDIFIFMLSTRAGGL 139 (288)
Q Consensus 62 ~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~--~~~~~~vll~s~~~~~~ 139 (288)
.+...|.. .+..+..+....+.+..+. ...+..+.++-.++...-.+.++..+. ..+.+.|++++......
T Consensus 23 ~l~~~L~~---~g~~v~~~~~~~~a~~~l~----~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~ 95 (147)
T 2zay_A 23 ASISALSQ---EGFDIIQCGNAIEAVPVAV----KTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAK 95 (147)
T ss_dssp HHHHHHHH---HTEEEEEESSHHHHHHHHH----HHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHH
T ss_pred HHHHHHHH---cCCeEEEeCCHHHHHHHHH----cCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHH
Confidence 34444443 3456666555554444443 345677777766655455556666653 24556676666442211
Q ss_pred ccc--c-cccceeEEecCCCCcchhhhhhHHHHH
Q psy10684 140 GIN--L-ATADVVVLYDSDWNPQMDLQAMVREAK 170 (288)
Q Consensus 140 Gln--l-~~a~~vi~~d~~wnp~~~~Qa~~R~~R 170 (288)
-.. + .++.. ++..|.++....+++.++.+
T Consensus 96 ~~~~~~~~g~~~--~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 96 EEAQLLDMGFID--FIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp HHHHHHHHTCSE--EEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCE--EEeCCCCHHHHHHHHHHHHH
Confidence 100 0 12222 23446677666666666544
No 202
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=39.17 E-value=98 Score=21.98 Aligned_cols=75 Identities=9% Similarity=-0.088 Sum_probs=39.5
Q ss_pred hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccc-ccccccceeEEecCCCCcchhhhhhHHHH
Q psy10684 95 YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG-INLATADVVVLYDSDWNPQMDLQAMVREA 169 (288)
Q Consensus 95 ~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~G-lnl~~a~~vi~~d~~wnp~~~~Qa~~R~~ 169 (288)
....+..+.++-.++...-.+.++..+...+.+.|++++......- .....+.-.-++..|.++....+++.++.
T Consensus 58 ~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 133 (152)
T 3eul_A 58 KAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCA 133 (152)
T ss_dssp HHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHH
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHH
Confidence 3456677788777665555566666654455667767665432111 11111111223335666666666665554
No 203
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=38.78 E-value=1.2e+02 Score=25.47 Aligned_cols=66 Identities=11% Similarity=-0.056 Sum_probs=49.3
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEe--cchHHHHHHHHHHhhcCcEEEEeeCCCC-HHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFS--QMTRMLDILEDYCYWRGFKYCRLDGQTA-HEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs--~~~~~~~~l~~~l~~~~~~~~~~~G~~~-~~~R~~~i~~F~ 121 (288)
.|-|...+..++....+++.+.||-+ ..-...-.++......|+++..+-.... ...+...++.|-
T Consensus 51 gs~K~R~~~~~i~~a~~~G~~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~G 119 (325)
T 1j0a_A 51 GGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMG 119 (325)
T ss_dssp CSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHCC
Confidence 57899999888888777776665543 6777888888889999999877654433 466677777774
No 204
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=38.75 E-value=97 Score=21.54 Aligned_cols=99 Identities=12% Similarity=-0.031 Sum_probs=56.7
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcC--CCCCeeEEEEeccccccc-cccccccee
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNM--EGSDIFIFMLSTRAGGLG-INLATADVV 149 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~--~~~~~~vll~s~~~~~~G-lnl~~a~~v 149 (288)
.+..+..+....+.++. +....+..+.++-.++...-.+.++..+. ..+.+.|++++......- .....+.-.
T Consensus 30 ~g~~v~~~~~~~~a~~~----l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~ 105 (142)
T 3cg4_A 30 AGFHIISADSGGQCIDL----LKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVV 105 (142)
T ss_dssp TTCEEEEESSHHHHHHH----HHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEE
T ss_pred CCeEEEEeCCHHHHHHH----HHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCcc
Confidence 35666655554444433 34556788888877665445555666553 346677877775532221 112222333
Q ss_pred EEecCCCCcchhhhhhHHHHHHhhhc
Q psy10684 150 VLYDSDWNPQMDLQAMVREAKILRRG 175 (288)
Q Consensus 150 i~~d~~wnp~~~~Qa~~R~~R~Gq~~ 175 (288)
-++..|.++....+++.++.+..+..
T Consensus 106 ~~l~kp~~~~~l~~~i~~~~~~~~~~ 131 (142)
T 3cg4_A 106 DYITKPFDNEDLIEKTTFFMGFVRNQ 131 (142)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 34456788888888887776655443
No 205
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=38.38 E-value=21 Score=25.89 Aligned_cols=36 Identities=6% Similarity=0.112 Sum_probs=30.1
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCC
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQT 108 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~ 108 (288)
.+.++|++|............|...|++ +..+.|++
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 126 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSM 126 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcH
Confidence 4578999999988788888899999995 77788876
No 206
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=38.08 E-value=1.1e+02 Score=21.79 Aligned_cols=96 Identities=10% Similarity=0.017 Sum_probs=53.0
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc----cccccccc
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL----GINLATAD 147 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~----Glnl~~a~ 147 (288)
..+..+..+.+..+.++.+.. ...+..+.++-.++...-.+.++..+...+.+.+++++...... .+....++
T Consensus 25 ~~~~~v~~~~~~~~a~~~l~~---~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 101 (151)
T 3kcn_A 25 SFDFEVTTCESGPEALACIKK---SDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQVF 101 (151)
T ss_dssp TTTSEEEEESSHHHHHHHHHH---SCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCCS
T ss_pred ccCceEEEeCCHHHHHHHHHc---CCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCee
Confidence 346677766665555544432 22357888887776555555555555334566776766543211 11111122
Q ss_pred eeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 148 VVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 148 ~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
. ++.-|.++....+++.++.+..
T Consensus 102 ~--~l~KP~~~~~L~~~i~~~l~~~ 124 (151)
T 3kcn_A 102 R--FLNKPCQMSDIKAAINAGIKQY 124 (151)
T ss_dssp E--EEESSCCHHHHHHHHHHHHHHH
T ss_pred E--EEcCCCCHHHHHHHHHHHHHHH
Confidence 2 3445778877777777765543
No 207
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=38.08 E-value=98 Score=21.40 Aligned_cols=94 Identities=12% Similarity=0.084 Sum_probs=44.9
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCC-----HHHHHHHHHhhcCCCCCeeEEEEeccccccc-cccccc
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTA-----HEDRQRQINDFNMEGSDIFIFMLSTRAGGLG-INLATA 146 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~-----~~~R~~~i~~F~~~~~~~~vll~s~~~~~~G-lnl~~a 146 (288)
.+..+..+....+.++. +.......+.++-.++ ...-.+.++..+...+.+.+++++......- .....+
T Consensus 26 ~g~~v~~~~~~~~a~~~----l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ 101 (140)
T 2qr3_A 26 HFSKVITLSSPVSLSTV----LREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKE 101 (140)
T ss_dssp TSSEEEEECCHHHHHHH----HHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHT
T ss_pred CCcEEEEeCCHHHHHHH----HHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHc
Confidence 35666665554444443 3445677777776665 3333444444443334566666664332110 111111
Q ss_pred ceeEEecCCCCcchhhhhhHHHHH
Q psy10684 147 DVVVLYDSDWNPQMDLQAMVREAK 170 (288)
Q Consensus 147 ~~vi~~d~~wnp~~~~Qa~~R~~R 170 (288)
.-.-++..|.++....+++.++.+
T Consensus 102 g~~~~l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 102 GASDFVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp TCCEEEEESCCHHHHHHHHHHHHT
T ss_pred CchheeeCCCCHHHHHHHHHHHHH
Confidence 111223346666666666655543
No 208
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=37.69 E-value=1.3e+02 Score=25.47 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=49.8
Q ss_pred cCchHHHHHHHHHHHHhCCC----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQES----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|...+..++....+.+. +.||-+..-.....++......|+++..+-.......+...++.|.
T Consensus 50 GSfK~R~a~~~l~~a~~~g~l~~~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~G 119 (325)
T 3dwg_A 50 GSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYG 119 (325)
T ss_dssp SBTTHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCC
Confidence 57899888888887666654 5556566678888888888889999887765555566777778774
No 209
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=37.54 E-value=1.3e+02 Score=25.21 Aligned_cols=66 Identities=9% Similarity=-0.052 Sum_probs=49.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|...+..++....+.+.+.||-+..-...-.++......|+++..+-.......+.+.+..|.
T Consensus 35 gS~K~R~a~~~l~~a~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~G 100 (318)
T 2rkb_A 35 GSFKIRGIGHFCQEMAKKGCRHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEG 100 (318)
T ss_dssp SBTTHHHHHHHHHHHHHTTCCEEEECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcC
Confidence 578999888888876666666666666678888888888889999887765544466777777774
No 210
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=37.47 E-value=1.6e+02 Score=23.66 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=42.0
Q ss_pred cCchHHH-HHHHHHHHHh------CCCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHHH
Q psy10684 56 NSGKMVV-LDKLLPKLKA------QESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQRQ 116 (288)
Q Consensus 56 ~s~K~~~-l~~ll~~~~~------~~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~~ 116 (288)
.|+|..+ ++-++..+.. .+.++||.+.....+..+...++. .++.+..+.|+.+.......
T Consensus 101 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 172 (262)
T 3ly5_A 101 GSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK 172 (262)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH
Confidence 5889875 4455554433 467899999998887776666554 46788888898876554433
No 211
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=37.02 E-value=1.1e+02 Score=21.52 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=54.7
Q ss_pred CeEEEEecchHHHHHHHHHHhh-cCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccc-ccccccceeEEe
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYW-RGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG-INLATADVVVLY 152 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~-~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~G-lnl~~a~~vi~~ 152 (288)
..++.+....+.+..+. .. ..+..+.++-.++...-.+.++..+...+.+.|++++....... .....+.-.-++
T Consensus 46 ~~v~~~~~~~~~~~~~~---~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l 122 (146)
T 4dad_A 46 YRVTRTVGRAAQIVQRT---DGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVL 122 (146)
T ss_dssp CEEEEECCCHHHHTTCH---HHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEE
T ss_pred eEEEEeCCHHHHHHHHH---hcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeE
Confidence 67777776655544432 33 56778888888877666667766664456677777765432111 111122222334
Q ss_pred cCCCCcchhhhhhHHHHHH
Q psy10684 153 DSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 153 d~~wnp~~~~Qa~~R~~R~ 171 (288)
..|.++.....++.++.+-
T Consensus 123 ~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 123 RWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp ESSCCHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHhh
Confidence 5577777777777766543
No 212
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=36.56 E-value=20 Score=26.84 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=29.3
Q ss_pred CCeEEEEecch---------HHHHHHHHHHhhcCcEEEEeeCCC
Q psy10684 74 ESRVLIFSQMT---------RMLDILEDYCYWRGFKYCRLDGQT 108 (288)
Q Consensus 74 ~~kviIFs~~~---------~~~~~l~~~l~~~~~~~~~~~G~~ 108 (288)
+..+||||... .....+...|...|++...+.|++
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 56899999987 346778888999999999999986
No 213
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=35.86 E-value=39 Score=23.67 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=19.5
Q ss_pred CeEEEEecchHHHHHHHHHHhhcC-cEEEE
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWRG-FKYCR 103 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~~-~~~~~ 103 (288)
.+++|..........+...|...| +.+..
T Consensus 15 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~ 44 (135)
T 3snk_A 15 KQVALFSSDPNFKRDVATRLDALAIYDVRV 44 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTSSEEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhhcCCeEEEE
Confidence 367777777777777777777766 65543
No 214
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=35.29 E-value=89 Score=21.80 Aligned_cols=95 Identities=5% Similarity=-0.045 Sum_probs=51.8
Q ss_pred CCCeEEEEecchHHHHHHHHHHhh-cCcEEEEeeCCCC-HHHHHHHHHhhcC--CCCCeeEEEEeccccccc-ccccccc
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYW-RGFKYCRLDGQTA-HEDRQRQINDFNM--EGSDIFIFMLSTRAGGLG-INLATAD 147 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~-~~~~~~~~~G~~~-~~~R~~~i~~F~~--~~~~~~vll~s~~~~~~G-lnl~~a~ 147 (288)
.+..++.+....+.++ .+.. ..+..+.++-.++ ...-.+.++..+. ..+.+.|++++......- .....+.
T Consensus 28 ~~~~v~~~~~~~~a~~----~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g 103 (140)
T 3lua_A 28 GEYDFIEVENLKKFYS----IFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFK 103 (140)
T ss_dssp CCCEEEEECSHHHHHT----TTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSC
T ss_pred cCccEEEECCHHHHHH----HHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcC
Confidence 4667776655444333 3344 5677888888887 6666666666653 345666767764432110 0111111
Q ss_pred eeEEecCCCCcchhhhhhHHHHHH
Q psy10684 148 VVVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 148 ~vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
-.-++.-|.++....+++.++.+-
T Consensus 104 ~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 104 VSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp CSEEEESSCCTTHHHHHHHHHHCC
T ss_pred CCEEEECCCCHHHHHHHHHHHHHh
Confidence 122334566777776666665443
No 215
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=34.81 E-value=1.7e+02 Score=24.23 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=49.2
Q ss_pred cCchHHHHHHHHHHHHhCCC----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQES----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|...+..++....+.+. +.||-+.+-.....++......|+++..+-.......+...+..|.
T Consensus 42 gSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~G 111 (308)
T 2egu_A 42 SSVKDRIALAMIEAAEKAGKLKPGDTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYG 111 (308)
T ss_dssp SBTHHHHHHHHHHHHHHTTCCCTTCEEEEECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcC
Confidence 67799988888887766554 5666677888888899999989999877654434455666777774
No 216
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=34.73 E-value=37 Score=21.71 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=27.6
Q ss_pred eEEEEe-cchHHHHHHHHHHhh-----cCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 76 RVLIFS-QMTRMLDILEDYCYW-----RGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 76 kviIFs-~~~~~~~~l~~~l~~-----~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
++++|+ .+...+..+...|.. .++.+..++-......+.+..+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~ 53 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAG 53 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhC
Confidence 567776 555667777777766 6788877754322222345555664
No 217
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=33.95 E-value=1.8e+02 Score=24.94 Aligned_cols=66 Identities=14% Similarity=0.006 Sum_probs=50.4
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC-CHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT-AHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~-~~~~R~~~i~~F~ 121 (288)
.|-|...+..++....+.+.+.||-+.+-...-.++......|+++..+-... ....+...+..|.
T Consensus 66 gSfKdR~a~~~l~~a~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~G 132 (360)
T 2d1f_A 66 GSFKDRGMTMAVTDALAHGQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHG 132 (360)
T ss_dssp SBTTHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcC
Confidence 67899999888888777777777777777888888888888899988876543 3455666777774
No 218
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=33.90 E-value=1.6e+02 Score=24.45 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=48.9
Q ss_pred cCchHHHHHHHHHHHHhCCC----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQES----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|...+..++....+.+. +.||-+.+-.....++......|+++..+-.......+...+..|-
T Consensus 44 gSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~G 113 (313)
T 2q3b_A 44 NSVKDRIGVAMLQAAEQAGLIKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYG 113 (313)
T ss_dssp SBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCC
Confidence 67799998888887766554 4566677788888899999989999887654444455666777774
No 219
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=33.55 E-value=1.3e+02 Score=21.38 Aligned_cols=96 Identities=10% Similarity=0.056 Sum_probs=50.7
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccc-ccccccc-ee
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG-INLATAD-VV 149 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~G-lnl~~a~-~v 149 (288)
..+..+..+....+.++.+ ....+..+.++-.++...-.+.++..+...+.+.+++++......- .....+. -.
T Consensus 36 ~~g~~v~~~~~~~~a~~~l----~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 111 (153)
T 3hv2_A 36 PLPYTLHFARDATQALQLL----ASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIY 111 (153)
T ss_dssp TSSCEEEEESSHHHHHHHH----HHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCS
T ss_pred ccCcEEEEECCHHHHHHHH----HcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcc
Confidence 3456666555554444443 4456778888877765555555555553345666766664322111 0111111 12
Q ss_pred EEecCCCCcchhhhhhHHHHHH
Q psy10684 150 VLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 150 i~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
-++.-|+++....+++.++.+.
T Consensus 112 ~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 112 RYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp EEECSSCCHHHHHHHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHH
Confidence 2344577777777776665543
No 220
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=33.16 E-value=1.5e+02 Score=25.20 Aligned_cols=67 Identities=9% Similarity=-0.101 Sum_probs=50.3
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC-CHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT-AHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~-~~~~R~~~i~~F~ 121 (288)
..|-|...+..++....+.+.+.||-+.+-...-.++......|+++..+-... ....+...+..|.
T Consensus 57 tgS~KdR~a~~~l~~a~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~G 124 (351)
T 3aey_A 57 TGSFKDRGMTLAVSKAVEGGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHG 124 (351)
T ss_dssp TSBTTHHHHHHHHHHHHHTTCSEEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 367899999888888777777777777778888888888888899987765432 3355666777774
No 221
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=32.88 E-value=1.8e+02 Score=24.16 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=46.9
Q ss_pred cCchHHHHHHHHHHHHhCCC----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQES----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|...+..++....+.+. +.||-+..-.....++......|+++..+........+.+.+..|.
T Consensus 38 GSfK~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~G 107 (303)
T 2v03_A 38 GSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYG 107 (303)
T ss_dssp SBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcC
Confidence 56799988888887665543 4455555677777888888889999887755444455666777774
No 222
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=32.68 E-value=1.6e+02 Score=22.15 Aligned_cols=77 Identities=10% Similarity=0.148 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccc
Q psy10684 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGI 141 (288)
Q Consensus 62 ~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Gl 141 (288)
.+.+.+.........+.|.+........++..|...|+++..+++... .|. .+ | .+.|--.+.|+
T Consensus 49 ~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~---~~--v-~v~t~~~~KGl 113 (174)
T 3dmn_A 49 QVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA---PG--V-IVVPSFLAKGL 113 (174)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC---SS--E-EEEEGGGCTTC
T ss_pred HHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC---CC--e-EEEEccccCCc
Confidence 455555543233467888888888899999999999999877766441 122 33 3 45566677887
Q ss_pred cccccceeEEecCCC
Q psy10684 142 NLATADVVVLYDSDW 156 (288)
Q Consensus 142 nl~~a~~vi~~d~~w 156 (288)
. .+.||++++..
T Consensus 114 E---f~~V~~~~~~~ 125 (174)
T 3dmn_A 114 E---FDAVIVWNANQ 125 (174)
T ss_dssp C---EEEEEEETCBT
T ss_pred C---CCEEEEecCCc
Confidence 6 66889988653
No 223
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=32.56 E-value=1.3e+02 Score=20.99 Aligned_cols=77 Identities=6% Similarity=-0.008 Sum_probs=40.5
Q ss_pred hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEecCCCCcchhhhhhHHHHHHh
Q psy10684 95 YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 95 ~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
....+..+.++-.++...-.+.++..+...+.+.+++++... ..-.....+.-.-++..|.++....+++.++.+.-
T Consensus 52 ~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~-~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (143)
T 2qv0_A 52 QHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWK-EHAVEAFELEAFDYILKPYQESRIINMLQKLTTAW 128 (143)
T ss_dssp HHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEESCC-TTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEEEeCCH-HHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHH
Confidence 445567777776665544555666666434445565665431 11111111222233445777777777777665443
No 224
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=32.54 E-value=1e+02 Score=29.89 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=43.8
Q ss_pred cCchHHHHHHHHHHHHh-CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeC
Q psy10684 56 NSGKMVVLDKLLPKLKA-QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDG 106 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~-~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G 106 (288)
.++|...+..++..+.. .+.++++-+.....++.|.+.+...|++.+++.+
T Consensus 381 GTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~ 432 (800)
T 2wjy_A 381 GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA 432 (800)
T ss_dssp TSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEeecc
Confidence 57999999999988766 5789999999999999999999888888777754
No 225
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=32.46 E-value=1.2e+02 Score=20.82 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=51.6
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcC-cEEEEeeCCCCHHHHHHHHHhhcCC-CCCeeEEEEeccccccc-cccccccee
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRG-FKYCRLDGQTAHEDRQRQINDFNME-GSDIFIFMLSTRAGGLG-INLATADVV 149 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~-~~~~~~~G~~~~~~R~~~i~~F~~~-~~~~~vll~s~~~~~~G-lnl~~a~~v 149 (288)
.+..+..++...+.+..+ .... +..+.++-.++...-.+.++..+.. .+.+.+++++......- .....+.-.
T Consensus 30 ~g~~v~~~~~~~~a~~~~----~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~ 105 (136)
T 3hdv_A 30 RGIDAVGADGAEEARLYL----HYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVV 105 (136)
T ss_dssp TTCCEEEESSHHHHHHHH----HHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCS
T ss_pred cCceEEEeCCHHHHHHHH----HhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcc
Confidence 466776666555444443 2233 7778888777666666677776643 35667767665432211 111112222
Q ss_pred EEecCCCCcchhhhhhHHHHHH
Q psy10684 150 VLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 150 i~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
-++.-|+++....+++.|+.+-
T Consensus 106 ~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 106 DFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEEESSCCHHHHHHHHHHHHC-
T ss_pred eEEeCCCCHHHHHHHHHHHhcC
Confidence 2344567777777766665443
No 226
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=32.30 E-value=1.1e+02 Score=20.45 Aligned_cols=59 Identities=3% Similarity=0.077 Sum_probs=38.6
Q ss_pred CCeEEEEe-cchHHHHHHHHHHhhcCcEEEEeeCCC-CHHHHHHHHHhhcC--CCCCeeEEEE
Q psy10684 74 ESRVLIFS-QMTRMLDILEDYCYWRGFKYCRLDGQT-AHEDRQRQINDFNM--EGSDIFIFML 132 (288)
Q Consensus 74 ~~kviIFs-~~~~~~~~l~~~l~~~~~~~~~~~G~~-~~~~R~~~i~~F~~--~~~~~~vll~ 132 (288)
..++++|+ .+...+..+...|...++++..++=.. +..++.+..+.+.. +...+.++++
T Consensus 21 ~~~v~ly~~~~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i 83 (103)
T 3nzn_A 21 RGKVIMYGLSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII 83 (103)
T ss_dssp CSCEEEEECSSCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE
Confidence 35688875 566779999999999998887665443 34556566554321 4455666555
No 227
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=32.28 E-value=1.6e+02 Score=24.36 Aligned_cols=67 Identities=15% Similarity=0.031 Sum_probs=49.1
Q ss_pred ccCchHHHHHHHHHHHHhCCC----e--EEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQES----R--VLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~----k--viIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|...+..++....+.+. + .||-+.+-.....++......|+++..+........+...+..|.
T Consensus 36 tGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~G 108 (304)
T 1ve1_A 36 GGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFG 108 (304)
T ss_dssp TSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcC
Confidence 357799988888887666554 4 666677778888888888889999887654444456666777774
No 228
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=32.10 E-value=96 Score=30.12 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=43.2
Q ss_pred cCchHHHHHHHHHHHHh-CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeC
Q psy10684 56 NSGKMVVLDKLLPKLKA-QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDG 106 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~-~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G 106 (288)
.++|...+..++..+.. .+.++++.+.....++.+.+.|...+++.+++.+
T Consensus 385 GTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~ 436 (802)
T 2xzl_A 385 GTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTA 436 (802)
T ss_dssp TSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEeecc
Confidence 68999999888887655 5789999999999999999999888888777654
No 229
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=31.89 E-value=1e+02 Score=19.82 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=35.3
Q ss_pred eEEEEe-cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 76 RVLIFS-QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 76 kviIFs-~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
++++|+ .+...+..+...|...++++..++=. .+.+.+..+.++ +...+.+++
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~~-~~~~vP~l~ 60 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRAN-GRNTFPQIF 60 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHHH-SSCCSCEEE
T ss_pred eEEEEECCCChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHhC-CCCCcCEEE
Confidence 677886 45566888888998889988877665 455666666662 233444433
No 230
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=31.09 E-value=47 Score=27.28 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=35.4
Q ss_pred HHHHHHHHHH-HhCCCeEEEEecchHH-HHHHHHHHhhcCc-EEEEeeCCC
Q psy10684 61 VVLDKLLPKL-KAQESRVLIFSQMTRM-LDILEDYCYWRGF-KYCRLDGQT 108 (288)
Q Consensus 61 ~~l~~ll~~~-~~~~~kviIFs~~~~~-~~~l~~~l~~~~~-~~~~~~G~~ 108 (288)
..+.+.+..+ ...+..+||||+.... ...+...|...|+ ++..++|++
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 4555566654 3456789999987655 6777888888998 578889976
No 231
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=30.74 E-value=1.7e+02 Score=23.65 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=45.5
Q ss_pred cCchHHHHHHHHHHHHhCC-CeEEEEecchHHHHHHHHHHhhcC----cEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEE
Q psy10684 56 NSGKMVVLDKLLPKLKAQE-SRVLIFSQMTRMLDILEDYCYWRG----FKYCRLDGQTAHEDRQRQINDFNMEGSDIFIF 130 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~-~kviIFs~~~~~~~~l~~~l~~~~----~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vl 130 (288)
.++|......++......+ .++||.+.....+....+.+...+ ..+..+.|+.+..+ . ......|+
T Consensus 138 GsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~I~ 208 (282)
T 1rif_A 138 SAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD--------K-YKNDAPVV 208 (282)
T ss_dssp TSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT--------C-CCTTCSEE
T ss_pred CCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh--------h-hccCCcEE
Confidence 5889988776666544333 499999998888777777666543 34566666654322 1 12345566
Q ss_pred EEecccc
Q psy10684 131 MLSTRAG 137 (288)
Q Consensus 131 l~s~~~~ 137 (288)
+.+.+..
T Consensus 209 v~T~~~l 215 (282)
T 1rif_A 209 VGTWQTV 215 (282)
T ss_dssp EECHHHH
T ss_pred EEchHHH
Confidence 6665543
No 232
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=30.20 E-value=1.6e+02 Score=25.14 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=49.8
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCC-CHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT-AHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~-~~~~R~~~i~~F~ 121 (288)
..|-|...+..++....+.+.+.||-+.+-...-.++......|+++..+-... ....+...+..|.
T Consensus 59 tGS~KdR~a~~~l~~a~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~G 126 (352)
T 2zsj_A 59 TGSFKDRGMTLAISKAVEAGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYG 126 (352)
T ss_dssp TSBTTHHHHHHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcC
Confidence 367899998888888777777777777777888888888888899987765442 3345556777774
No 233
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=30.18 E-value=1.3e+02 Score=20.51 Aligned_cols=59 Identities=8% Similarity=0.077 Sum_probs=32.3
Q ss_pred CCCeEE-EEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 73 QESRVL-IFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 73 ~~~kvi-IFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
.+..++ .+.+..+.+..+. ......+.++-.++...-.+.++..+...+.+.+++++..
T Consensus 24 ~g~~v~~~~~~~~~a~~~~~----~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 24 NDIEILAELTEGGSAVQRVE----TLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp TTEEEEEEESSSTTHHHHHH----HHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC
T ss_pred CCcEEEEEcCCHHHHHHHHH----hcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCC
Confidence 345555 4555555444443 3456667777666555555555555544455666666543
No 234
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=30.08 E-value=1.8e+02 Score=21.95 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=43.0
Q ss_pred cCchHHH-HHHHHHHHH-----hCCCeEEEEecchHHHHHHHHHHhhc--CcEEEEeeCCCCHHHHHHH
Q psy10684 56 NSGKMVV-LDKLLPKLK-----AQESRVLIFSQMTRMLDILEDYCYWR--GFKYCRLDGQTAHEDRQRQ 116 (288)
Q Consensus 56 ~s~K~~~-l~~ll~~~~-----~~~~kviIFs~~~~~~~~l~~~l~~~--~~~~~~~~G~~~~~~R~~~ 116 (288)
.|+|... +..++..+. ..+.++||.+.....+..+.+.+... ++++..++|+.+.......
T Consensus 48 GsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (207)
T 2gxq_A 48 GTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEA 116 (207)
T ss_dssp TSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHH
Confidence 5889976 444555443 24568999999988888888777665 4678888888876554433
No 235
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=30.00 E-value=1.9e+02 Score=24.89 Aligned_cols=67 Identities=9% Similarity=-0.095 Sum_probs=51.0
Q ss_pred ccCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|...+..++....+.+.+.||-+..-...-.++......|+++..+-.......+...+..|.
T Consensus 73 tGSfKdRga~~~l~~a~~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~G 139 (372)
T 1p5j_A 73 SGSFKIRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEG 139 (372)
T ss_dssp GGBTTHHHHHHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcC
Confidence 4688999888888876666666666666688888888888888999888765555566777777774
No 236
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=29.80 E-value=1.3e+02 Score=23.70 Aligned_cols=50 Identities=14% Similarity=0.055 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHH
Q psy10684 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDR 113 (288)
Q Consensus 62 ~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R 113 (288)
...++...+...-.+|-||.+.. .+.+...+...++.++++||..+.+.-
T Consensus 41 ~a~~i~~~~~~~~~~VgVfvn~~--~~~i~~~~~~~~ld~vQLHG~e~~~~~ 90 (203)
T 1v5x_A 41 AARAIGEALGPFVVRVGVFRDQP--PEEVLRLMEEARLQVAQLHGEEPPEWA 90 (203)
T ss_dssp HHHHHHHHSCSSSEEEEEESSCC--HHHHHHHHHHTTCSEEEECSCCCHHHH
T ss_pred HHHHHHHhCCCCCCEEEEEeCCC--HHHHHHHHHhhCCCEEEECCCCCHHHH
Confidence 33344444333456899998763 567777888889999999999877543
No 237
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=29.68 E-value=1.4e+02 Score=20.69 Aligned_cols=95 Identities=9% Similarity=-0.029 Sum_probs=46.6
Q ss_pred eEEEEecchHHHHHHHHHHh----h--cCcEEEEeeCCCCHHHHHHHHHhhcCCC--CCeeEEEEeccccccc-cccccc
Q psy10684 76 RVLIFSQMTRMLDILEDYCY----W--RGFKYCRLDGQTAHEDRQRQINDFNMEG--SDIFIFMLSTRAGGLG-INLATA 146 (288)
Q Consensus 76 kviIFs~~~~~~~~l~~~l~----~--~~~~~~~~~G~~~~~~R~~~i~~F~~~~--~~~~vll~s~~~~~~G-lnl~~a 146 (288)
.+..+.+..+.++.+...-. . ..+..+.++-.++...-.+.++..+... +.+.+++++....... .....+
T Consensus 34 ~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~ 113 (149)
T 1k66_A 34 PIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSY 113 (149)
T ss_dssp CEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHT
T ss_pred eEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHC
Confidence 56555555554444432100 0 4566777777766555556666666332 4556666654332111 011111
Q ss_pred ceeEEecCCCCcchhhhhhHHHHH
Q psy10684 147 DVVVLYDSDWNPQMDLQAMVREAK 170 (288)
Q Consensus 147 ~~vi~~d~~wnp~~~~Qa~~R~~R 170 (288)
.-.-++.-|.++....+++.++.+
T Consensus 114 g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 114 SISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp TCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCHHHHHHHHHHHHH
Confidence 112233446677666666666543
No 238
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=29.40 E-value=1.7e+02 Score=24.40 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=49.2
Q ss_pred ccCchHHHHHHHHHHHHhCCC----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQES----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|...+..++....+.+. +.||-+..-.....++......|+++..+-.......+...+..|.
T Consensus 38 tGSfK~R~a~~~i~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~G 108 (316)
T 1y7l_A 38 SYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLG 108 (316)
T ss_dssp GGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcC
Confidence 357799988888887766554 5666666778888888888889998877655444456667777774
No 239
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=29.40 E-value=69 Score=26.03 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=34.4
Q ss_pred HHHHHHHHHH-HhCCCeEEEEecchH-HHHHHHHHHhhcCcE-EEEeeCCC
Q psy10684 61 VVLDKLLPKL-KAQESRVLIFSQMTR-MLDILEDYCYWRGFK-YCRLDGQT 108 (288)
Q Consensus 61 ~~l~~ll~~~-~~~~~kviIFs~~~~-~~~~l~~~l~~~~~~-~~~~~G~~ 108 (288)
..+.+.+..+ ...+..+||+|.... ....+...|...|+. +..++|++
T Consensus 67 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 4555556654 345678999998765 566777788888985 66788876
No 240
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=29.16 E-value=1.8e+02 Score=22.34 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=37.6
Q ss_pred cCchHHH-HHHHHHHHHh--CCCeEEEEecchHHHHHHHHHHhhc--------CcEEEEeeCCCCH
Q psy10684 56 NSGKMVV-LDKLLPKLKA--QESRVLIFSQMTRMLDILEDYCYWR--------GFKYCRLDGQTAH 110 (288)
Q Consensus 56 ~s~K~~~-l~~ll~~~~~--~~~kviIFs~~~~~~~~l~~~l~~~--------~~~~~~~~G~~~~ 110 (288)
.|+|..+ +.-++..+.. .+.++||.+.....+..+.+.+... ++.+..+.|+.+.
T Consensus 51 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 116 (219)
T 1q0u_A 51 GTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDK 116 (219)
T ss_dssp SHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHH
T ss_pred CChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCH
Confidence 5889876 4445554433 2468999999988877766655432 6788888888753
No 241
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=29.15 E-value=1.3e+02 Score=20.19 Aligned_cols=92 Identities=9% Similarity=0.026 Sum_probs=41.9
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccc-ccccccceeEE
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG-INLATADVVVL 151 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~G-lnl~~a~~vi~ 151 (288)
.+..+..+.+..+.++.+ .......+.++-.++...-.+.+...+...+.+.+++++......- .....+...-+
T Consensus 26 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 101 (124)
T 1srr_A 26 EGYQTFQAANGLQALDIV----TKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTH 101 (124)
T ss_dssp TTCEEEEESSHHHHHHHH----HHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCCCE
T ss_pred CCcEEEEeCCHHHHHHHH----hccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccCchHHHHHHHhcChHhh
Confidence 355665555444444443 2345566777766554333344444432234566666654321110 00111111222
Q ss_pred ecCCCCcchhhhhhHHH
Q psy10684 152 YDSDWNPQMDLQAMVRE 168 (288)
Q Consensus 152 ~d~~wnp~~~~Qa~~R~ 168 (288)
+.-|+++....+++.++
T Consensus 102 l~KP~~~~~l~~~i~~~ 118 (124)
T 1srr_A 102 FAKPFDIDEIRDAVKKY 118 (124)
T ss_dssp EESSCCHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHH
Confidence 34566666666655554
No 242
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=28.72 E-value=1.7e+02 Score=25.14 Aligned_cols=66 Identities=9% Similarity=-0.086 Sum_probs=48.7
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|...+..++....+.+.+.||-+..-.....++......|+++..+-.......+.+.++.|.
T Consensus 74 GSfK~Rga~~~i~~a~~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~G 139 (364)
T 4h27_A 74 GSFKIRGIGHFCKRWAKQGCAHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEG 139 (364)
T ss_dssp SBTHHHHHHHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcC
Confidence 678999887788777777766666666677888888888888998877655444556666777664
No 243
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=28.38 E-value=1.5e+02 Score=20.52 Aligned_cols=93 Identities=10% Similarity=0.009 Sum_probs=48.5
Q ss_pred CeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCC--CCeeEEEEeccccccc-ccccccceeEE
Q psy10684 75 SRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEG--SDIFIFMLSTRAGGLG-INLATADVVVL 151 (288)
Q Consensus 75 ~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~--~~~~vll~s~~~~~~G-lnl~~a~~vi~ 151 (288)
..+..+.+..+.++.+ ....+..+.++-.++...-.+.+...+... +.+.+++++......- .....+.-.-+
T Consensus 27 ~~v~~~~~~~~a~~~~----~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 102 (140)
T 3n53_A 27 YLVIESKNEKEALEQI----DHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDY 102 (140)
T ss_dssp SEEEEESSHHHHHHHH----HHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEE
T ss_pred ceEEEeCCHHHHHHHH----hcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCee
Confidence 5666665555545444 344677888888777666666666666433 5677777775432211 11112222233
Q ss_pred ecCCCCcchhhhhhHHHHHH
Q psy10684 152 YDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 152 ~d~~wnp~~~~Qa~~R~~R~ 171 (288)
+.-|+++....+++.++.+-
T Consensus 103 l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 103 LTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp EESSCCHHHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHhh
Confidence 44577888777777766543
No 244
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=28.38 E-value=1.5e+02 Score=20.43 Aligned_cols=93 Identities=6% Similarity=-0.062 Sum_probs=46.8
Q ss_pred CCeEE-EEecchHHHHHHHHHHhhcCcEEEEeeCCCC-HHHHHHHHHhhcCCCCCeeEEEEecccccc----cccccccc
Q psy10684 74 ESRVL-IFSQMTRMLDILEDYCYWRGFKYCRLDGQTA-HEDRQRQINDFNMEGSDIFIFMLSTRAGGL----GINLATAD 147 (288)
Q Consensus 74 ~~kvi-IFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~-~~~R~~~i~~F~~~~~~~~vll~s~~~~~~----Glnl~~a~ 147 (288)
+..++ ++....+.+..+. ...+..+.++-.++ ...-.+.+...+.. +.+.+++++...... .+. .++.
T Consensus 33 g~~v~~~~~~~~~a~~~~~----~~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~ii~ls~~~~~~~~~~~~~-~g~~ 106 (140)
T 3cg0_A 33 GYDVLGVFDNGEEAVRCAP----DLRPDIALVDIMLCGALDGVETAARLAAG-CNLPIIFITSSQDVETFQRAKR-VNPF 106 (140)
T ss_dssp TCEEEEEESSHHHHHHHHH----HHCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCEEEEECCCCHHHHHHHHT-TCCS
T ss_pred CCeeEEEECCHHHHHHHHH----hCCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCEEEEecCCCHHHHHHHHh-cCCC
Confidence 56666 4555555444443 34567777775554 23333444444422 455666666443211 111 1222
Q ss_pred eeEEecCCCCcchhhhhhHHHHHHhhh
Q psy10684 148 VVVLYDSDWNPQMDLQAMVREAKILRR 174 (288)
Q Consensus 148 ~vi~~d~~wnp~~~~Qa~~R~~R~Gq~ 174 (288)
. ++..|.++....+++.++.+....
T Consensus 107 ~--~l~kp~~~~~l~~~i~~~~~~~~~ 131 (140)
T 3cg0_A 107 G--YLAKPVAADTLHRSIEMAIHKKKL 131 (140)
T ss_dssp E--EEEESCCHHHHHHHHHHHHHHHHH
T ss_pred E--EEeCCCCHHHHHHHHHHHHhcccc
Confidence 2 233467777777777776655433
No 245
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=28.36 E-value=1.4e+02 Score=20.26 Aligned_cols=40 Identities=8% Similarity=-0.013 Sum_probs=16.0
Q ss_pred hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEec
Q psy10684 95 YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLST 134 (288)
Q Consensus 95 ~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~ 134 (288)
....+..+.++-.++...-.+.++..+...+.+.+++++.
T Consensus 48 ~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~ 87 (130)
T 3eod_A 48 GGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISA 87 (130)
T ss_dssp TTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEEC
T ss_pred hcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 3444555555555444333344444433333445545543
No 246
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=28.34 E-value=1.3e+02 Score=20.02 Aligned_cols=93 Identities=5% Similarity=-0.098 Sum_probs=41.9
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCC-HHHHHHHHHhhcCC--CCCeeEEEEeccccccccccccccee
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTA-HEDRQRQINDFNME--GSDIFIFMLSTRAGGLGINLATADVV 149 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~-~~~R~~~i~~F~~~--~~~~~vll~s~~~~~~Glnl~~a~~v 149 (288)
.+..+..+....+.+..+ ....+..+.++-.++ ...-.+.++..+.. .+.+.+++++......-.....+.-.
T Consensus 28 ~g~~v~~~~~~~~a~~~~----~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~ 103 (127)
T 2gkg_A 28 RGFTVDETTDGKGSVEQI----RRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQHRKLKAHAD 103 (127)
T ss_dssp HTCEEEEECCHHHHHHHH----HHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEEECGGGHHHHHHSTTCCS
T ss_pred cCceEEEecCHHHHHHHH----HhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEEecCCchhHHHHHHhCcc
Confidence 355666655554444444 334566677776655 33334444444422 24555555522111111111111111
Q ss_pred EEecCCCCcchhhhhhHHHH
Q psy10684 150 VLYDSDWNPQMDLQAMVREA 169 (288)
Q Consensus 150 i~~d~~wnp~~~~Qa~~R~~ 169 (288)
-++..|.++....+++.++.
T Consensus 104 ~~l~kp~~~~~l~~~i~~~~ 123 (127)
T 2gkg_A 104 EYVAKPVDADQLVERAGALI 123 (127)
T ss_dssp EEEESSCCHHHHHHHHHHHH
T ss_pred hheeCCCCHHHHHHHHHHHH
Confidence 23345666666666555543
No 247
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=28.10 E-value=1.6e+02 Score=20.79 Aligned_cols=77 Identities=9% Similarity=-0.044 Sum_probs=36.7
Q ss_pred HhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccc-ccccccceeEEecCCCCcchhhhhhHHHHH
Q psy10684 94 CYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG-INLATADVVVLYDSDWNPQMDLQAMVREAK 170 (288)
Q Consensus 94 l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~G-lnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R 170 (288)
+.......+.++-.++...-.+.+...+...+.+.+++++......- .....+.-.-++..|.++....+++.++.+
T Consensus 47 l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 47 YRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp HHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred HhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 34455677777766654444444554443334556666664322111 111111111233456677666666665543
No 248
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=27.87 E-value=81 Score=26.60 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=34.9
Q ss_pred HHHHHHHHHH-HhCCCeEEEEecchH-HHHHHHHHHhhcCcE-EEEeeCCC
Q psy10684 61 VVLDKLLPKL-KAQESRVLIFSQMTR-MLDILEDYCYWRGFK-YCRLDGQT 108 (288)
Q Consensus 61 ~~l~~ll~~~-~~~~~kviIFs~~~~-~~~~l~~~l~~~~~~-~~~~~G~~ 108 (288)
..+.+.+..+ ...+..+||||.... ........|+..|+. +..++|++
T Consensus 97 ~~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 97 EQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 3555566554 345688999998766 566777888888984 77888876
No 249
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=27.54 E-value=1.3e+02 Score=19.44 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=33.4
Q ss_pred eEEEEe-cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 76 RVLIFS-QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 76 kviIFs-~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
++++|+ .+...+..+...|...++++..++=......+.+..+.+.
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~ 53 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSG 53 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHT
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhC
Confidence 677776 4556788999999999998888876655555555555553
No 250
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=26.75 E-value=1.2e+02 Score=18.87 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=35.0
Q ss_pred eEEEEe-cchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEE
Q psy10684 76 RVLIFS-QMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFM 131 (288)
Q Consensus 76 kviIFs-~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll 131 (288)
++++|+ .+...+..+...|...++++..++=......+.+..+.+. ...+.+++
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~--~~~vP~l~ 56 (82)
T 1fov_A 2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG--RTTVPQIF 56 (82)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHS--SCCSCEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhC--CCCcCEEE
Confidence 567775 4567788888999988888877776554445555544443 34444443
No 251
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=26.69 E-value=1.6e+02 Score=20.28 Aligned_cols=95 Identities=8% Similarity=-0.043 Sum_probs=49.9
Q ss_pred CCCe-EEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcC--CCCCeeEEEEeccccccc-ccccccce
Q psy10684 73 QESR-VLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNM--EGSDIFIFMLSTRAGGLG-INLATADV 148 (288)
Q Consensus 73 ~~~k-viIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~--~~~~~~vll~s~~~~~~G-lnl~~a~~ 148 (288)
.+.. +..+.+..+.++.+ .......+.++-.++...-.+.++..+. ..+.+.+++++......- .....+.-
T Consensus 32 ~~~~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~ 107 (143)
T 3cnb_A 32 FPYAKIKIAYNPFDAGDLL----HTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGA 107 (143)
T ss_dssp CTTCEEEEECSHHHHHHHH----HHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTC
T ss_pred cCccEEEEECCHHHHHHHH----HhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCC
Confidence 4556 55555544444433 3455677888877665555556666653 345667766664432111 11111112
Q ss_pred eEEecCCCCcchhhhhhHHHHHH
Q psy10684 149 VVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 149 vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
.-++..|.++....+++.++.+-
T Consensus 108 ~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 108 ETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp SEEEESSCCHHHHHHHHHHHHHT
T ss_pred cEEEeCCCCHHHHHHHHHHHHHh
Confidence 22334567777777777666543
No 252
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=26.58 E-value=59 Score=26.73 Aligned_cols=37 Identities=8% Similarity=0.142 Sum_probs=30.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHh-hcCc-EEEEeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCY-WRGF-KYCRLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~-~~~~-~~~~~~G~~ 108 (288)
..+..+|+||+...........|. ..|+ ++..++|++
T Consensus 231 ~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 231 TKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 346789999998877777888888 8898 578889976
No 253
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=26.34 E-value=1.7e+02 Score=20.61 Aligned_cols=93 Identities=10% Similarity=0.092 Sum_probs=48.5
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccc----cccccccce
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGL----GINLATADV 148 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~----Glnl~~a~~ 148 (288)
.+..+..+....+.+. .+....+..+.++-.++...-.+.+...+...+.+.+++++...... .+...++..
T Consensus 30 ~g~~v~~~~~~~~a~~----~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~ 105 (154)
T 2rjn_A 30 LGCNIITFTSPLDALE----ALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISR 105 (154)
T ss_dssp TTCEEEEESCHHHHHH----HHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSE
T ss_pred cCCeEEEeCCHHHHHH----HHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchhe
Confidence 4566665555444333 33445677777776665444444555544333566676666543211 111111222
Q ss_pred eEEecCCCCcchhhhhhHHHHHH
Q psy10684 149 VVLYDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 149 vi~~d~~wnp~~~~Qa~~R~~R~ 171 (288)
++..|.++....+++.++.+.
T Consensus 106 --~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 106 --FLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp --EEESSCCHHHHHHHHHHHHHH
T ss_pred --eeeCCCCHHHHHHHHHHHHHH
Confidence 334567777777777666543
No 254
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=26.12 E-value=1.6e+02 Score=20.15 Aligned_cols=95 Identities=11% Similarity=-0.025 Sum_probs=48.2
Q ss_pred CCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccc-ccccccceeEE
Q psy10684 73 QESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG-INLATADVVVL 151 (288)
Q Consensus 73 ~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~G-lnl~~a~~vi~ 151 (288)
.+..+..+.+..+.+..+ .......+.++-.++...-.+.++..+...+.+.+++++....... .....+.-.-+
T Consensus 26 ~g~~v~~~~~~~~al~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~ 101 (132)
T 3crn_A 26 EGYEVEIAATAGEGLAKI----ENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAY 101 (132)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred CCceEEEeCCHHHHHHHH----hcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccccHHHHHHHHhccchhh
Confidence 456666555544444333 3455677777766654333444444432234566766665432111 11111222233
Q ss_pred ecCCCCcchhhhhhHHHHHH
Q psy10684 152 YDSDWNPQMDLQAMVREAKI 171 (288)
Q Consensus 152 ~d~~wnp~~~~Qa~~R~~R~ 171 (288)
+.-|+++....+++.++.+.
T Consensus 102 l~KP~~~~~L~~~i~~~~~~ 121 (132)
T 3crn_A 102 IMKPVNPRDLLEKIKEKLDE 121 (132)
T ss_dssp EESSCCHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHhc
Confidence 45577787777777666543
No 255
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=26.11 E-value=1e+02 Score=23.49 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=34.9
Q ss_pred cCchHHHHHHHHHHHHh------CCCeEEEEecchHHHHH-HHHHHhh---cCcEEEEeeCCCCHHH
Q psy10684 56 NSGKMVVLDKLLPKLKA------QESRVLIFSQMTRMLDI-LEDYCYW---RGFKYCRLDGQTAHED 112 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~------~~~kviIFs~~~~~~~~-l~~~l~~---~~~~~~~~~G~~~~~~ 112 (288)
.++|.......+..... .+.++||.+.....++. +.+.+.. .++.+..++|+.....
T Consensus 58 GsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~ 124 (216)
T 3b6e_A 58 GSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKI 124 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCC
T ss_pred CCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccch
Confidence 57888766555543221 25789999998877665 4444333 3678888888775443
No 256
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=25.99 E-value=1.1e+02 Score=23.69 Aligned_cols=84 Identities=10% Similarity=-0.003 Sum_probs=50.3
Q ss_pred HHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcC-CCCCeeEEEEecccccccc-cccccceeEEecCCCCcchhhhhhH
Q psy10684 89 ILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNM-EGSDIFIFMLSTRAGGLGI-NLATADVVVLYDSDWNPQMDLQAMV 166 (288)
Q Consensus 89 ~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~-~~~~~~vll~s~~~~~~Gl-nl~~a~~vi~~d~~wnp~~~~Qa~~ 166 (288)
.+...+....+..+.++-.++...-.+.+...+. ..+.+.|++++......-. ....+.-.-++.-|+++.....++.
T Consensus 45 ~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~ 124 (225)
T 3klo_A 45 LEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMS 124 (225)
T ss_dssp HHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHH
T ss_pred HHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHH
Confidence 3333345566788889988887777777777764 3567778777754322110 1111112223456778888888777
Q ss_pred HHHHHh
Q psy10684 167 REAKIL 172 (288)
Q Consensus 167 R~~R~G 172 (288)
++.+-+
T Consensus 125 ~~~~~~ 130 (225)
T 3klo_A 125 KILQDE 130 (225)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 776543
No 257
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=25.61 E-value=2.7e+02 Score=23.20 Aligned_cols=66 Identities=15% Similarity=0.015 Sum_probs=47.5
Q ss_pred cCchHHHHHHHHHHHHhCCC-----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQES-----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~-----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|......++....+.+. +.||-+.+-...-.++......|+++..+-.......+...+..|.
T Consensus 43 GSfK~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~G 113 (322)
T 1z7w_A 43 SSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFG 113 (322)
T ss_dssp SBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcC
Confidence 56799988888877666654 4555566777888888888889999887654444456666777774
No 258
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=25.47 E-value=1.7e+02 Score=20.26 Aligned_cols=97 Identities=7% Similarity=-0.057 Sum_probs=51.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCH-HHHHHHHHhhcCCCCCeeEEEEecccccccc-ccccccee
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAH-EDRQRQINDFNMEGSDIFIFMLSTRAGGLGI-NLATADVV 149 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~-~~R~~~i~~F~~~~~~~~vll~s~~~~~~Gl-nl~~a~~v 149 (288)
..+..+..+....+.+..+. ....+..+.++-.++. ..-.+.++..+. .+.+.+++++......-. ....+.-.
T Consensus 27 ~~g~~v~~~~~~~~a~~~l~---~~~~~dlvi~D~~l~~~~~g~~~~~~l~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~ 102 (140)
T 3h5i_A 27 KYGYTVEIALTGEAAVEKVS---GGWYPDLILMDIELGEGMDGVQTALAIQQ-ISELPVVFLTAHTEPAVVEKIRSVTAY 102 (140)
T ss_dssp HTTCEEEEESSHHHHHHHHH---TTCCCSEEEEESSCSSSCCHHHHHHHHHH-HCCCCEEEEESSSSCCCCGGGGGSCEE
T ss_pred HcCCEEEEecChHHHHHHHh---cCCCCCEEEEeccCCCCCCHHHHHHHHHh-CCCCCEEEEECCCCHHHHHHHHhCCCc
Confidence 34667777666555544442 1245677777766642 333344444442 245667677655432211 12222333
Q ss_pred EEecCCCCcchhhhhhHHHHHHh
Q psy10684 150 VLYDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 150 i~~d~~wnp~~~~Qa~~R~~R~G 172 (288)
-++.-|.++....+++.++.+.-
T Consensus 103 ~~l~KP~~~~~l~~~i~~~l~~~ 125 (140)
T 3h5i_A 103 GYVMKSATEQVLITIVEMALRLY 125 (140)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHH
Confidence 34556788888777777765543
No 259
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=25.29 E-value=78 Score=25.80 Aligned_cols=47 Identities=13% Similarity=0.031 Sum_probs=33.9
Q ss_pred HHHHHHHHH-HhCCCeEEEEecchHHHHHHHHHHhh-cCcE-EEEeeCCC
Q psy10684 62 VLDKLLPKL-KAQESRVLIFSQMTRMLDILEDYCYW-RGFK-YCRLDGQT 108 (288)
Q Consensus 62 ~l~~ll~~~-~~~~~kviIFs~~~~~~~~l~~~l~~-~~~~-~~~~~G~~ 108 (288)
.|.+.+... ...+.++|+||............|.. .|++ +..++|++
T Consensus 213 ~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 213 ELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp HHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 344455443 24567899999998877777888885 8985 77888976
No 260
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=25.08 E-value=1.4e+02 Score=23.44 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHH
Q psy10684 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHED 112 (288)
Q Consensus 62 ~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~ 112 (288)
...++...+...-.+|-||.+.. .+.+...+...++.++++||..+.+.
T Consensus 42 ~a~~i~~~~~~~~~~VgVfvn~~--~~~i~~~~~~~~ld~vQLHG~e~~~~ 90 (205)
T 1nsj_A 42 DARRISVELPPFVFRVGVFVNEE--PEKILDVASYVQLNAVQLHGEEPIEL 90 (205)
T ss_dssp HHHHHHHHSCSSSEEEEEESSCC--HHHHHHHHHHHTCSEEEECSCCCHHH
T ss_pred HHHHHHHhCCCCCCEEEEEeCCC--HHHHHHHHHhhCCCEEEECCCCCHHH
Confidence 33444444333456899998764 46777777778999999999987653
No 261
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=24.79 E-value=51 Score=27.05 Aligned_cols=38 Identities=5% Similarity=-0.096 Sum_probs=31.5
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
..+.++|++|............|...|++ +..+.|++.
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~ 266 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 266 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHH
Confidence 34678999999888788888889999994 788999985
No 262
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=24.77 E-value=2.5e+02 Score=22.02 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=46.8
Q ss_pred cCchHHH-HHHHHHHHHhC-----------CCeEEEEecchHHHHHHHHHHhh----cCcEEEEeeCCCCHHHHHHHHHh
Q psy10684 56 NSGKMVV-LDKLLPKLKAQ-----------ESRVLIFSQMTRMLDILEDYCYW----RGFKYCRLDGQTAHEDRQRQIND 119 (288)
Q Consensus 56 ~s~K~~~-l~~ll~~~~~~-----------~~kviIFs~~~~~~~~l~~~l~~----~~~~~~~~~G~~~~~~R~~~i~~ 119 (288)
.|+|..+ +.-++..+... +.++||.+.....+..+...+.. .++.++.++|+.+..+....+
T Consensus 70 GsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-- 147 (253)
T 1wrb_A 70 GSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV-- 147 (253)
T ss_dssp TSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH--
T ss_pred CChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh--
Confidence 6899875 44444444322 25899999998887776665544 367888888888655443332
Q ss_pred hcCCCCCeeEEEEeccc
Q psy10684 120 FNMEGSDIFIFMLSTRA 136 (288)
Q Consensus 120 F~~~~~~~~vll~s~~~ 136 (288)
. .++.|++.+...
T Consensus 148 -~---~~~~Ivv~Tp~~ 160 (253)
T 1wrb_A 148 -Q---MGCHLLVATPGR 160 (253)
T ss_dssp -S---SCCSEEEECHHH
T ss_pred -C---CCCCEEEECHHH
Confidence 2 234565655543
No 263
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=24.65 E-value=1.8e+02 Score=20.24 Aligned_cols=95 Identities=6% Similarity=-0.029 Sum_probs=48.7
Q ss_pred CCeEE-EEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccc-ccccccceeEE
Q psy10684 74 ESRVL-IFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG-INLATADVVVL 151 (288)
Q Consensus 74 ~~kvi-IFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~G-lnl~~a~~vi~ 151 (288)
+..++ .+.+..+.+. .+.......+.++-.++...-.+.++..+...+.+.+++++......- .....+.-.-+
T Consensus 28 ~~~~~~~~~~~~~al~----~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~ 103 (141)
T 3cu5_A 28 SFDQIDQADDGINAIQ----IALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRY 103 (141)
T ss_dssp CCSEEEEESSHHHHHH----HHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCEE
T ss_pred CcEEeeecccHHHHHH----HHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccEE
Confidence 44555 4444333333 334456677787777665444445555443335667767765432211 11112222334
Q ss_pred ecCCCCcchhhhhhHHHHHHh
Q psy10684 152 YDSDWNPQMDLQAMVREAKIL 172 (288)
Q Consensus 152 ~d~~wnp~~~~Qa~~R~~R~G 172 (288)
+.-|+++....+++.++.+..
T Consensus 104 l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 104 VEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp ECSSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHH
Confidence 566788888888777765543
No 264
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=24.53 E-value=1.8e+02 Score=20.87 Aligned_cols=71 Identities=7% Similarity=0.028 Sum_probs=39.6
Q ss_pred hhcCcEEEEeeCCCCHHHHHHHHHhhcC--CCCCeeEEEEecccccc----cccccccceeEEecCCCCcchhhhhhHHH
Q psy10684 95 YWRGFKYCRLDGQTAHEDRQRQINDFNM--EGSDIFIFMLSTRAGGL----GINLATADVVVLYDSDWNPQMDLQAMVRE 168 (288)
Q Consensus 95 ~~~~~~~~~~~G~~~~~~R~~~i~~F~~--~~~~~~vll~s~~~~~~----Glnl~~a~~vi~~d~~wnp~~~~Qa~~R~ 168 (288)
+...+..+.++-.||.-+-.+.++..+. ..+.+.|+++|...... ++.. +++ -++--|+++....+++.++
T Consensus 54 ~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~-Ga~--~yl~KP~~~~~L~~~i~~~ 130 (134)
T 3to5_A 54 KKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQA-GVN--GYIVKPFTAATLKEKLDKI 130 (134)
T ss_dssp HHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHT-TCC--EEEESSCCHHHHHHHHHHH
T ss_pred HhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHC-CCC--EEEECCCCHHHHHHHHHHH
Confidence 4456788888888887666666666652 23456677777543221 2221 122 2233566776666655544
No 265
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=24.43 E-value=1.8e+02 Score=23.10 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=37.1
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCC
Q psy10684 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQT 108 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~ 108 (288)
.++|......++... +.+++|++.....+..+...+...++. +..++|..
T Consensus 118 G~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~ 168 (237)
T 2fz4_A 118 GSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRI 168 (237)
T ss_dssp STTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSC
T ss_pred CCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 678888776666543 678999998888877777777766776 77777765
No 266
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=24.19 E-value=88 Score=24.73 Aligned_cols=91 Identities=21% Similarity=0.258 Sum_probs=52.7
Q ss_pred ccCchHHH-HHHHHHHHHh---CCCeEEEEecchHHHHHHHHHHhhc----CcEEEEeeCCCCHHHHHHHHHhhc-CCCC
Q psy10684 55 FNSGKMVV-LDKLLPKLKA---QESRVLIFSQMTRMLDILEDYCYWR----GFKYCRLDGQTAHEDRQRQINDFN-MEGS 125 (288)
Q Consensus 55 ~~s~K~~~-l~~ll~~~~~---~~~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~~G~~~~~~R~~~i~~F~-~~~~ 125 (288)
..|+|..+ ++-++..+.. .+.++||.+.....+..+...+... ++.+..++|..... ..+. ....
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 148 (245)
T 3dkp_A 75 TGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA------KKFGPKSSK 148 (245)
T ss_dssp TTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH------TTTSTTSCC
T ss_pred CCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH------HHhhhhhcC
Confidence 36899875 5555555443 3558999999998888777766654 66666666543211 1221 1233
Q ss_pred CeeEEEEecccc-------cccccccccceeEE
Q psy10684 126 DIFIFMLSTRAG-------GLGINLATADVVVL 151 (288)
Q Consensus 126 ~~~vll~s~~~~-------~~Glnl~~a~~vi~ 151 (288)
++.|++.++... ...+++.....+|+
T Consensus 149 ~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 149 KFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp CCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 456655554322 22456666665554
No 267
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=24.16 E-value=63 Score=25.64 Aligned_cols=38 Identities=8% Similarity=-0.076 Sum_probs=31.5
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~ 109 (288)
..+.++|+||+...........|...|.++..++|++.
T Consensus 182 ~~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 182 QPGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp CTTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 44678999999988888888899988977788888763
No 268
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=24.08 E-value=1.9e+02 Score=20.56 Aligned_cols=62 Identities=6% Similarity=0.023 Sum_probs=32.9
Q ss_pred hCCCeEE-EEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecc
Q psy10684 72 AQESRVL-IFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTR 135 (288)
Q Consensus 72 ~~~~kvi-IFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~ 135 (288)
..+..++ .+....+.++.+...- ..+..+.++-.++...-.+.++..+...+.+.|++++..
T Consensus 58 ~~g~~v~~~~~~~~~al~~l~~~~--~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 58 SEGFNIIDTAADGEEAVIKYKNHY--PNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp HTTCEEEEEESSHHHHHHHHHHHG--GGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred hCCCeEEEEECCHHHHHHHHHhcC--CCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEecc
Confidence 3456666 5555555555443320 145667777666554444555555433455566666643
No 269
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=23.78 E-value=2.7e+02 Score=22.01 Aligned_cols=67 Identities=12% Similarity=0.033 Sum_probs=46.2
Q ss_pred HHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHH-HHHHHHHhhcCCCCCeeEEEEe
Q psy10684 66 LLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHE-DRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 66 ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~-~R~~~i~~F~~~~~~~~vll~s 133 (288)
+.+.+.+.+.+|++.....+.++.+...+...+-.+..+.+..+.. .-.+.++...+. +.+.+++-+
T Consensus 23 ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-g~id~lv~n 90 (252)
T 3h7a_A 23 IAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH-APLEVTIFN 90 (252)
T ss_dssp HHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-SCEEEEEEC
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh-CCceEEEEC
Confidence 3444556788999999888888888888887777777787777543 344555555533 566665544
No 270
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=23.43 E-value=2.7e+02 Score=22.94 Aligned_cols=88 Identities=15% Similarity=0.009 Sum_probs=52.7
Q ss_pred ccCchHHH-HHHHHHHHHhC--CCeEEEEecchHHHHHHHHHHhhc-----CcEEEEeeCCCCHHHHHHHHHhhcCCCCC
Q psy10684 55 FNSGKMVV-LDKLLPKLKAQ--ESRVLIFSQMTRMLDILEDYCYWR-----GFKYCRLDGQTAHEDRQRQINDFNMEGSD 126 (288)
Q Consensus 55 ~~s~K~~~-l~~ll~~~~~~--~~kviIFs~~~~~~~~l~~~l~~~-----~~~~~~~~G~~~~~~R~~~i~~F~~~~~~ 126 (288)
..|+|..+ ++.++..+... +.++||.+.....+..+...+... ++....+.|+.+...+. ..+
T Consensus 140 TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~ 210 (300)
T 3fmo_B 140 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---------KIS 210 (300)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---------CCC
T ss_pred CCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---------cCC
Confidence 46889865 55677665443 347999999998877766655442 56777777776533221 233
Q ss_pred eeEEEEecccc------cccccccccceeEE
Q psy10684 127 IFIFMLSTRAG------GLGINLATADVVVL 151 (288)
Q Consensus 127 ~~vll~s~~~~------~~Glnl~~a~~vi~ 151 (288)
..|++.++... ...+++.....+|+
T Consensus 211 ~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 211 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp CSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred CCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 45655554432 12455666666654
No 271
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=23.27 E-value=2.7e+02 Score=21.74 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=45.0
Q ss_pred HHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCH-HHHHHHHHhhcCCCCCeeEEEEe
Q psy10684 66 LLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAH-EDRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 66 ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~-~~R~~~i~~F~~~~~~~~vll~s 133 (288)
+.+.+.+.+.++++.......++.+...+...+..+..+.+..+. +.-.+.++...+..+.+.+++-+
T Consensus 21 ~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ 89 (247)
T 3lyl_A 21 VAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNN 89 (247)
T ss_dssp HHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCCSEEEEC
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 344455678899999998888888888888777777777777644 33444555544333455665444
No 272
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=23.23 E-value=1.8e+02 Score=19.95 Aligned_cols=76 Identities=8% Similarity=-0.063 Sum_probs=39.2
Q ss_pred hhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEeccccccc-ccccccceeEEecCCCCcchhhhhhHHHHH
Q psy10684 95 YWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG-INLATADVVVLYDSDWNPQMDLQAMVREAK 170 (288)
Q Consensus 95 ~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~G-lnl~~a~~vi~~d~~wnp~~~~Qa~~R~~R 170 (288)
.......+.++-.++...-.+.++..+...+.+.+++++......- .....+.-.-++.-|+++....+++.++.+
T Consensus 46 ~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 46 EEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp HHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC
T ss_pred hhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 3345677777776655444445555543345667777765432111 111111222234456777777776666544
No 273
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=22.97 E-value=2.4e+02 Score=23.76 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=47.9
Q ss_pred cCchHHHHHHHHHHHHhCCC-----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQES-----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~-----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|...+..++....+.+. .+||-+..-.....++......|+++..+-.......+...++.|.
T Consensus 48 GSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~G 118 (334)
T 3tbh_A 48 ASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFG 118 (334)
T ss_dssp SBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCC
Confidence 67899888888877666543 3345555677888888888888999887766555566777777774
No 274
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=22.96 E-value=91 Score=25.52 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=33.5
Q ss_pred HHHHHHHHH-HhCCCeEEEEecchH-HHHHHHHHHhhcCcE-EEEeeCCCC
Q psy10684 62 VLDKLLPKL-KAQESRVLIFSQMTR-MLDILEDYCYWRGFK-YCRLDGQTA 109 (288)
Q Consensus 62 ~l~~ll~~~-~~~~~kviIFs~~~~-~~~~l~~~l~~~~~~-~~~~~G~~~ 109 (288)
.+.+.+..+ ...+.++|+||.... ........|...|+. +..++|++.
T Consensus 66 ~~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 116 (285)
T 1uar_A 66 EFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQ 116 (285)
T ss_dssp HHHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 345555544 345678999998765 456677788888984 778899763
No 275
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=22.19 E-value=2e+02 Score=19.89 Aligned_cols=79 Identities=9% Similarity=-0.043 Sum_probs=45.1
Q ss_pred HhhcCcEEEEeeCCCCHHHHHHHHHhhcC--CCCCeeEEEEecccccccc-cccccceeEEecCCC-CcchhhhhhHHHH
Q psy10684 94 CYWRGFKYCRLDGQTAHEDRQRQINDFNM--EGSDIFIFMLSTRAGGLGI-NLATADVVVLYDSDW-NPQMDLQAMVREA 169 (288)
Q Consensus 94 l~~~~~~~~~~~G~~~~~~R~~~i~~F~~--~~~~~~vll~s~~~~~~Gl-nl~~a~~vi~~d~~w-np~~~~Qa~~R~~ 169 (288)
+....+..+.++-.++...-.+.++..+. ..+.+.+++++......-. ....+.-.-++.-|+ ++....+++.++.
T Consensus 47 l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l 126 (144)
T 3kht_A 47 VQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIF 126 (144)
T ss_dssp HTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHH
T ss_pred hhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH
Confidence 35566778888877776666677777764 3456677777654221111 111122222344566 7777777776665
Q ss_pred HHh
Q psy10684 170 KIL 172 (288)
Q Consensus 170 R~G 172 (288)
+.-
T Consensus 127 ~~~ 129 (144)
T 3kht_A 127 SYW 129 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 276
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=22.16 E-value=2.3e+02 Score=23.47 Aligned_cols=67 Identities=10% Similarity=-0.067 Sum_probs=46.6
Q ss_pred ccCchHHHHHHHHHHHHhCCC--eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 55 FNSGKMVVLDKLLPKLKAQES--RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 55 ~~s~K~~~l~~ll~~~~~~~~--kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
..|-|...+..++....+.+. +.||-+.+-.....++......|+++..+-.......+...+..|.
T Consensus 43 tGSfK~R~a~~~l~~a~~~g~~~~~vv~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~G 111 (303)
T 1o58_A 43 GGSVKDRPALFMILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLG 111 (303)
T ss_dssp TSBTTHHHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTT
T ss_pred CCChHHHHHHHHHHHHHHcCCCCCCEEEECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcC
Confidence 357799988888887655553 3345555667777888888888998877654434456666777774
No 277
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=21.85 E-value=1.5e+02 Score=21.72 Aligned_cols=21 Identities=14% Similarity=-0.050 Sum_probs=15.3
Q ss_pred HHHHHHhhcCc---EEEEeeCCCC
Q psy10684 89 ILEDYCYWRGF---KYCRLDGQTA 109 (288)
Q Consensus 89 ~l~~~l~~~~~---~~~~~~G~~~ 109 (288)
++...|...|+ ++..+.|++.
T Consensus 88 ~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 88 RFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp HHHHHHHHHTCCCSEEEEETTHHH
T ss_pred HHHHHHHHcCCCCCCEEEEcCcHH
Confidence 44467777886 6778999874
No 278
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=21.82 E-value=56 Score=27.07 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=32.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCc-EEEEeeCCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGF-KYCRLDGQTA 109 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~-~~~~~~G~~~ 109 (288)
..+.++++||............|...|+ ++..+.|++.
T Consensus 179 ~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 179 KKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp GTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4567999999998888889999999998 5778899874
No 279
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=21.81 E-value=2.7e+02 Score=22.44 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=42.0
Q ss_pred HHHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHH-HHHHHHHhhcCCCCCeeEEEEe
Q psy10684 66 LLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHE-DRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 66 ll~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~-~R~~~i~~F~~~~~~~~vll~s 133 (288)
+.+.+.+.+.+|++.+...+.++.+...+...+-....+.+..+.. +-.+.++...+.-+.+.+++-+
T Consensus 48 ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnn 116 (276)
T 3r1i_A 48 VALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCN 116 (276)
T ss_dssp HHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3444556788999999888888888888877666666667776543 3334444333222345554433
No 280
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=21.62 E-value=71 Score=25.98 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=30.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHhhcCcE-EEEeeCCC
Q psy10684 72 AQESRVLIFSQMTRMLDILEDYCYWRGFK-YCRLDGQT 108 (288)
Q Consensus 72 ~~~~kviIFs~~~~~~~~l~~~l~~~~~~-~~~~~G~~ 108 (288)
..+.++|+||+...........|...|++ +..+.|++
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 45678999999987777888889989984 77888876
No 281
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=20.94 E-value=2.5e+02 Score=23.79 Aligned_cols=66 Identities=17% Similarity=-0.038 Sum_probs=45.6
Q ss_pred cCchHHHHHHHHHHHHhCCC----eEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhc
Q psy10684 56 NSGKMVVLDKLLPKLKAQES----RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121 (288)
Q Consensus 56 ~s~K~~~l~~ll~~~~~~~~----kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~ 121 (288)
.|-|...+..++....+.+. +.||-+..-.....++......|+++..+-.......+.+.+..+.
T Consensus 55 GSfKdR~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~G 124 (343)
T 2pqm_A 55 SSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFG 124 (343)
T ss_dssp SBTHHHHHHHHHHHHHHHTSSCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCC
Confidence 56699887777776554443 3455555577777888888889998877655444456667777774
No 282
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=20.71 E-value=1.3e+02 Score=22.19 Aligned_cols=45 Identities=20% Similarity=0.419 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCeEEEEecch-HHHHHHHHHHhhcCcEEEEeeC
Q psy10684 62 VLDKLLPKLKAQESRVLIFSQMT-RMLDILEDYCYWRGFKYCRLDG 106 (288)
Q Consensus 62 ~l~~ll~~~~~~~~kviIFs~~~-~~~~~l~~~l~~~~~~~~~~~G 106 (288)
...+.|+.+.+.|.+++|.|.-. ..+..+...|...|+++..+..
T Consensus 28 ~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~~~I~~ 73 (142)
T 2obb_A 28 FAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANK 73 (142)
T ss_dssp THHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEESS
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCeEEEEc
Confidence 34566777778899998888653 4566777788888887655543
No 283
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=20.43 E-value=2.9e+02 Score=21.32 Aligned_cols=92 Identities=7% Similarity=0.058 Sum_probs=58.5
Q ss_pred CCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccccccccceeEEec
Q psy10684 74 ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD 153 (288)
Q Consensus 74 ~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Glnl~~a~~vi~~d 153 (288)
..++++.+.+..+.+.+.+.+...+.....+.|... +-....... . .++.| ++|-. +.+--|...-.+=..+
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~--~~v~~a~~~-~--~~~dV-IISRG--gta~~lr~~~~iPVV~ 75 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLT--RASKIAFGL-Q--DEVDA-IISRG--ATSDYIKKSVSIPSIS 75 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHH--HHHHHHHHH-T--TTCSE-EEEEH--HHHHHHHTTCSSCEEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHH--HHHHHHHHh-c--CCCeE-EEECC--hHHHHHHHhCCCCEEE
Confidence 468999999999999888888877777777888763 333334444 2 33445 44432 2222233222344556
Q ss_pred CCCCcchhhhhhHHHHHHhh
Q psy10684 154 SDWNPQMDLQAMVREAKILR 173 (288)
Q Consensus 154 ~~wnp~~~~Qa~~R~~R~Gq 173 (288)
.+.+.....+++-++.+.+.
T Consensus 76 I~~s~~Dil~al~~a~~~~~ 95 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGN 95 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCS
T ss_pred EcCCHhHHHHHHHHHHhhCC
Confidence 66677888888888877654
No 284
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=20.42 E-value=2.3e+02 Score=19.85 Aligned_cols=78 Identities=9% Similarity=-0.063 Sum_probs=41.1
Q ss_pred HHhhcCcEEEEeeCCCCHHHHHHHHHhhcCCCCCeeEEEEecccccccc-cccccceeEEecCCCCcchhhhhhHHHHH
Q psy10684 93 YCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGI-NLATADVVVLYDSDWNPQMDLQAMVREAK 170 (288)
Q Consensus 93 ~l~~~~~~~~~~~G~~~~~~R~~~i~~F~~~~~~~~vll~s~~~~~~Gl-nl~~a~~vi~~d~~wnp~~~~Qa~~R~~R 170 (288)
.+....+..+.++-.++...-.+.++..+...+.+.+++++........ ....+.-.-++..|.++....+++.++.+
T Consensus 61 ~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 61 LLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLE 139 (150)
T ss_dssp HHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHT
T ss_pred HhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHc
Confidence 3455667788888777665555666666544556677777654321111 01111112233346666666666655543
No 285
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=20.13 E-value=3.5e+02 Score=21.86 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=45.8
Q ss_pred HHHHHhCCCeEEEEecchHHHHHHHHHHhhcCcEEEEeeCCCCHH-HHHHHHHhhcCCCCCeeEEEEe
Q psy10684 67 LPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHE-DRQRQINDFNMEGSDIFIFMLS 133 (288)
Q Consensus 67 l~~~~~~~~kviIFs~~~~~~~~l~~~l~~~~~~~~~~~G~~~~~-~R~~~i~~F~~~~~~~~vll~s 133 (288)
.+.+.++|-+|++.....+.++...+.+...|.++..+.+..+.+ +-++.++...+.-+.+.+|+-+
T Consensus 26 a~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNN 93 (255)
T 4g81_D 26 AEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINN 93 (255)
T ss_dssp HHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEEC
Confidence 344557889999988888888888888888888888888887554 3344444443333466665544
No 286
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=20.05 E-value=1.6e+02 Score=25.88 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=35.1
Q ss_pred HHHHHHHHH-HhCCCeEEEEecchHHHHHHHHHHhhcCc-EEEEeeCCCC
Q psy10684 62 VLDKLLPKL-KAQESRVLIFSQMTRMLDILEDYCYWRGF-KYCRLDGQTA 109 (288)
Q Consensus 62 ~l~~ll~~~-~~~~~kviIFs~~~~~~~~l~~~l~~~~~-~~~~~~G~~~ 109 (288)
.+.+.+... ...+..+|+||............|...|+ ++..++|+++
T Consensus 190 ~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 190 QLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp HHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 344444432 23467899999987777788888988898 5788999874
Done!