RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10684
(288 letters)
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 303 bits (778), Expect = 6e-96
Identities = 122/170 (71%), Positives = 141/170 (82%), Gaps = 2/170 (1%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFNSGKMV 61
+L KD+DVVN G E+ RL NI MQLRKC NHPYLF GAEPGPPYTT EHLV NSGKMV
Sbjct: 417 LLQKDLDVVNAGG--ERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
+LDKLLPKLK ++SRVLIFSQMTR+LDILEDY +RG++YCR+DG T EDR I+ FN
Sbjct: 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFN 534
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKI 171
GS+ F+F+LSTRAGGLGINLATAD+V+LYDSDWNPQ+DLQA R +I
Sbjct: 535 KPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRI 584
Score = 128 bits (324), Expect = 2e-33
Identities = 48/70 (68%), Positives = 56/70 (80%)
Query: 213 RYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWN 272
Y YCR+DG T EDR I+ FN GS+ F+F+LSTRAGGLGINLATAD+V+LYDSDWN
Sbjct: 511 GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWN 570
Query: 273 PQMDLQAMVR 282
PQ+DLQA R
Sbjct: 571 PQVDLQAQDR 580
Score = 69.4 bits (170), Expect = 3e-13
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 168 EAKILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKGKNYTEEEDRYLYC 217
EA+I R+ I KA+ K+ RY+ P+ +L+I YG NKGK Y EE DR++ C
Sbjct: 890 EARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLC 939
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family
[Transcription / DNA replication, recombination, and
repair].
Length = 866
Score = 134 bits (337), Expect = 3e-35
Identities = 69/183 (37%), Positives = 99/183 (54%), Gaps = 18/183 (9%)
Query: 13 AGKLEKMRLQNILMQLRKCSNHPYLFDG-------------AEPGPPYTTDEHLVFNS-G 58
++ + +L +LR+ NHP L D E + L+ S G
Sbjct: 633 RIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKG 692
Query: 59 KMVVLDKLL-PKLKAQ--ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQR 115
K+ LD+LL KL + +VLIFSQ T +LD+LEDY G KY RLDG T + RQ
Sbjct: 693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQE 752
Query: 116 QINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175
I+ FN + +F+LS +AGGLG+NL AD V+L+D WNP ++LQA+ R +I ++
Sbjct: 753 LIDRFN-ADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKR 811
Query: 176 SIK 178
+K
Sbjct: 812 PVK 814
Score = 74.8 bits (183), Expect = 5e-15
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNP 273
Y RLDG T + RQ I+ FN + +F+LS +AGGLG+NL AD V+L+D WNP
Sbjct: 736 IKYVRLDGSTPAKRRQELIDRFN-ADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNP 794
Query: 274 QMDLQAMVR 282
++LQA+ R
Sbjct: 795 AVELQAIDR 803
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may not be an
autonomously folding unit, but an integral part of the
helicase; 4 helicase superfamilies at present according
to the organization of their signature motifs; all
helicases share the ability to unwind nucleic acid
duplexes with a distinct directional polarity; they
utilize the free energy from nucleoside triphosphate
hydrolysis to fuel their translocation along DNA,
unwinding the duplex in the process.
Length = 131
Score = 97.7 bits (244), Expect = 2e-25
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 3/127 (2%)
Query: 49 TDEHLVFNSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT 108
L K+ L +LL + + +VLIF +MLD L + G K L G
Sbjct: 3 KQYVLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDG 62
Query: 109 AHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVRE 168
+ E+R+ + DF + +++T GI+L VV+ YD W+P LQ + R
Sbjct: 63 SQEEREEVLKDFR---EGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRA 119
Query: 169 AKILRRG 175
+ ++G
Sbjct: 120 GRAGQKG 126
Score = 65.0 bits (159), Expect = 3e-13
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 208 TEEEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLY 267
+ + DG E+R+ + DF + +++T GI+L VV+ Y
Sbjct: 49 RKPGIKVAALHGDGSQ--EEREEVLKDFR---EGEIVVLVATDVIARGIDLPNVSVVINY 103
Query: 268 DSDWNPQMDLQAMVRT 283
D W+P LQ + R
Sbjct: 104 DLPWSPSSYLQRIGRA 119
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain.
Length = 82
Score = 76.5 bits (189), Expect = 6e-18
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 88 DILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATAD 147
+ L + G K RL G + E+R+ ++ FN + +++T G++L D
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFN---NGKIKVLVATDVAERGLDLPGVD 57
Query: 148 VVVLYDSDWNPQMDLQAM 165
+V++YD W+P +Q +
Sbjct: 58 LVIIYDLPWSPASYIQRI 75
Score = 67.6 bits (166), Expect = 8e-15
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 210 EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDS 269
+E RL G + E+R+ ++ FN + +++T G++L D+V++YD
Sbjct: 8 KELGIKVARLHGGLSQEEREEILDKFN---NGKIKVLVATDVAERGLDLPGVDLVIIYDL 64
Query: 270 DWNPQMDLQAMVRT 283
W+P +Q + R
Sbjct: 65 PWSPASYIQRIGRA 78
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain. The
Prosite family is restricted to DEAD/H helicases,
whereas this domain family is found in a wide variety of
helicases and helicase related proteins. It may be that
this is not an autonomously folding unit, but an
integral part of the helicase.
Length = 78
Score = 74.5 bits (184), Expect = 2e-17
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 92 DYCYWRGFKYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVL 151
G K RL G + E+R+ + DF + +++T G GI+L ++V+
Sbjct: 1 KLLRKPGIKVARLHGGLSQEEREEILEDFR---NGKSKVLVATDVAGRGIDLPDVNLVIN 57
Query: 152 YDSDWNPQMDLQAM 165
YD WNP +Q +
Sbjct: 58 YDLPWNPASYIQRI 71
Score = 71.0 bits (175), Expect = 5e-16
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNP 273
RL G + E+R+ + DF + +++T G GI+L ++V+ YD WNP
Sbjct: 8 IKVARLHGGLSQEEREEILEDFR---NGKSKVLVATDVAGRGIDLPDVNLVINYDLPWNP 64
Query: 274 QMDLQAMVRT 283
+Q + R
Sbjct: 65 ASYIQRIGRA 74
>gnl|CDD|220113 pfam09111, SLIDE, SLIDE. The SLIDE domain adopts a secondary
structure comprising a main core of three alpha-helices.
It has a role in DNA binding, contacting DNA target
sites similar to c-Myb (pfam00249) repeats or
homeodomains.
Length = 118
Score = 63.8 bits (156), Expect = 5e-13
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 168 EAKILRRGSIKKALEAKMSRYRAPFHQLRIAYG-ANKGKNYTEEEDRYLYCRLD 220
E KI +R + +KAL K+ +Y+ P +L+I Y NK K Y+EEEDR+L L
Sbjct: 12 EEKIEKRKNQQKALRRKLEQYKNPLQELKIQYPPNNKKKTYSEEEDRFLLLMLY 65
>gnl|CDD|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2
and 3. This family of class II histone deacetylase
complex subunits HDA2 and HDA3 is found in fungi, The
member from S. pombe is referred to as Ccq1. These
proteins associate with HDA1 to generate the activity of
the HDA1 histone deacetylase complex. HDA1 interacts
with itself and with the HDA2-HDA3 subcomplex to form a
probable tetramer and these interactions are necessary
for catalytic activity. The HDA1 histone deacetylase
complex is responsible for the deacetylation of lysine
residues on the N-terminal part of the core histones
(H2A, H2B, H3 and H4). Histone deacetylation gives a tag
for epigenetic repression and plays an important role in
transcriptional regulation, cell cycle progression and
developmental events. HDA2 and HDA3 have a conserved
coiled-coil domain towards their C-terminus.
Length = 279
Score = 48.5 bits (116), Expect = 1e-06
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 17 EKMRLQNILMQLRKCSNHPYL---------FDGAEPGPPYTTDEHLVFNSGKMVVLDKLL 67
E ++L + L + HPYL EP EHL SGK +VL+ L+
Sbjct: 53 ESIKL--LFENLSLVATHPYLLIDHYMPKSLLLKEPP------EHLAETSGKFLVLNDLI 104
Query: 68 PKLKAQES--RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQT-AHEDRQRQINDFNMEG 124
L E VLI S+ + LD++E +G Y RL G++ E+ +
Sbjct: 105 NLLIRSERDLHVLIISRSVKTLDLVEALLLGKGLNYKRLSGESLYEENHKV---SDKKGS 161
Query: 125 SDIFIFMLSTR 135
++I + ++
Sbjct: 162 LSLWIHLTTSD 172
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis].
Length = 513
Score = 41.7 bits (98), Expect = 3e-04
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 5/119 (4%)
Query: 57 SGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQ 116
K+ +L KLL E RV++F + R+++ L + RGFK L G E+R R
Sbjct: 258 EEKLELLLKLL--KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRA 315
Query: 117 INDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRG 175
+ F + +++T G+++ V+ YD +P+ + + R + R+G
Sbjct: 316 LEKFKDGELRV---LVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG 371
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain. This domain is
found in proteins involved in a variety of processes
including transcription regulation (e.g., SNF2, STH1,
brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA
recombination (e.g. RAD54), and chromatin unwinding
(e.g. ISWI) as well as a variety of other proteins with
little functional information (e.g. lodestar, ETL1).
Length = 301
Score = 40.8 bits (96), Expect = 4e-04
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 2 VLMKDIDVVNGAGKLEK-----MRLQNILMQLRKCSNHPYLF 38
+L K ++ A + + L N++MQLRK NHPYLF
Sbjct: 260 LLTKRRLALSFAVEGGEKNVGIASLLNLIMQLRKICNHPYLF 301
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional.
Length = 545
Score = 34.4 bits (79), Expect = 0.063
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 59 KMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTA--------H 110
K L LL ++ ++LIF + + D L K RLDG A
Sbjct: 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLT--------KELRLDGWPALCIHGDKKQ 413
Query: 111 EDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD 153
E+R +N+F S I M++T G+++ V+ +D
Sbjct: 414 EERTWVLNEFKTGKSPI---MIATDVASRGLDVKDVKYVINFD 453
>gnl|CDD|131806 TIGR02759, TraD_Ftype, type IV conjugative transfer system coupling
protein TraD. The TraD protein performs an essential
coupling function in conjugative type IV secretion
systems. This protein sits at the inner membrane in
contact with the assembled pilus and its scaffold as
well as the relaxosome-plasmid DNA complex (through
TraM).
Length = 566
Score = 31.6 bits (72), Expect = 0.44
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 8 DVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFN----SGKMVVL 63
+ G+ L L + R+ S G + +H++ + SGK V +
Sbjct: 136 HFIRGSQLSSPKELIKKLKKSRRAS--DIKIGGLPLIKFGSETQHILIHGTTGSGKSVAI 193
Query: 64 DKLLPKLKAQESRVLIF 80
KLL ++ + R +I+
Sbjct: 194 RKLLRWIRQRGDRAIIY 210
>gnl|CDD|236773 PRK10838, spr, outer membrane lipoprotein; Provisional.
Length = 190
Score = 29.0 bits (65), Expect = 1.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 80 FSQMTRMLD----ILEDYCYWRGFKYCRLDGQT 108
F M R +D I++ Y W+G +Y RL G T
Sbjct: 57 FENMVRNVDVKSRIMDQYADWKGVRY-RLGGST 88
>gnl|CDD|182093 PRK09819, PRK09819, alpha-mannosidase; Provisional.
Length = 875
Score = 29.6 bits (67), Expect = 2.1
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 74 ESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTA 109
SR+L+ + M +LD LE +KY LDGQT+
Sbjct: 24 RSRILLVNNMEEILDRLEQD---NDYKYYVLDGQTS 56
>gnl|CDD|232857 TIGR00176, mobB, molybdopterin-guanine dinucleotide biosynthesis
protein MobB. This molybdenum cofactor biosynthesis
enzyme is similar to the urease accessory protein UreG
and to the hydrogenase accessory protein HypB, both GTP
hydrolases involved in loading nickel into the
metallocenters of their respective target enzymes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 155
Score = 28.5 bits (64), Expect = 2.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDI 89
NSGK ++++L+ LKA+ RV DI
Sbjct: 9 NSGKTTLIERLVKALKARGYRVATIKHDHHDFDI 42
>gnl|CDD|205130 pfam12894, Apc4_WD40, Anaphase-promoting complex subunit 4 WD40
domain. Apc4 contains an N-terminal propeller-shaped
WD40 domain.The N-terminus of Afi1 serves to stabilise
the union between Apc4 and Apc5, both of which lie
towards the bottom-front of the APC,.
Length = 47
Score = 26.5 bits (59), Expect = 2.6
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 155 DWNPQMDLQAMVRE 168
W P MDL A+ E
Sbjct: 18 SWCPTMDLIALATE 31
Score = 26.5 bits (59), Expect = 2.7
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 270 DWNPQMDLQAMV 281
W P MDL A+
Sbjct: 18 SWCPTMDLIALA 29
>gnl|CDD|201174 pfam00352, TBP, Transcription factor TFIID (or TATA-binding
protein, TBP).
Length = 86
Score = 27.4 bits (62), Expect = 2.6
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 23/85 (27%)
Query: 6 DIDVVN--GAGKL-EKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEH----LVFNSG 58
DI + N + L + L+ I ++LR P F PG Y E L+F+SG
Sbjct: 3 DIKIQNIVASADLGFPIDLEKIALKLRNAEYEPEQF----PGLVYRLREPKATALIFSSG 58
Query: 59 KMVV------------LDKLLPKLK 71
K+V+ + K+ P LK
Sbjct: 59 KVVITGAKSEEDAKKAVRKIAPILK 83
>gnl|CDD|239954 cd04518, TBP_archaea, archaeal TATA box binding protein (TBP):
TBPs are transcription factors present in archaea and
eukaryotes, that recognize promoters and initiate
transcription. TBP has been shown to be an essential
component of three different transcription initiation
complexes: SL1, TFIID and TFIIIB, directing
transcription by RNA polymerases I, II and III,
respectively. TBP binds directly to the TATA box
promoter element, where it nucleates polymerase
assembly, thus defining the transcription start site.
TBP's binding in the minor groove induces a dramatic
DNA bending while its own structure barely changes. The
conserved core domain of TBP, which binds to the TATA
box, has a bipartite structure, with intramolecular
symmetry generating a saddle-shaped structure that sits
astride the DNA.
Length = 174
Score = 28.0 bits (63), Expect = 4.5
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 21 LQNILMQLRKCSNHPYLFDGAEPGPPYTTDEH----LVFNSGKMVV 62
L+ + +L +P F PG Y ++ L+F SGKMV
Sbjct: 19 LEKVAAELPNAEYNPDQF----PGLVYRLEDPKIAALIFRSGKMVC 60
>gnl|CDD|213742 TIGR02827, RNR_anaer_Bdell, anaerobic ribonucleoside-triphosphate
reductase. Members of this family belong to the class
III anaerobic ribonucleoside-triphosphate reductases
(RNR). These glycine-radical-containing enzymes are
oxygen-sensitive and operate under anaerobic conditions.
The genes for this family are pair with genes for an
acitivating protein that creates a glycine radical.
Members of this family, though related, fall outside the
scope of TIGR02487, a functionally equivalent protein
set; no genome has members in both familes.
Identification as RNR is supported by gene pairing with
the activating protein, lack of other anaerobic RNR, and
presence of an upstream regulatory element strongly
conserved upstream of most RNR operons [Purines,
pyrimidines, nucleosides, and nucleotides,
2'-Deoxyribonucleotide metabolism].
Length = 586
Score = 28.6 bits (64), Expect = 4.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 105 DGQTAHEDRQRQINDFNMEGSDIFIFM 131
DGQ D R I +G+ FI+M
Sbjct: 262 DGQCRDLDFARFIAQELAKGNSFFIYM 288
Score = 28.6 bits (64), Expect = 4.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 220 DGQTAHEDRQRQINDFNMEGSDIFIFM 246
DGQ D R I +G+ FI+M
Sbjct: 262 DGQCRDLDFARFIAQELAKGNSFFIYM 288
>gnl|CDD|227552 COG5227, SMT3, Ubiquitin-like protein (sentrin) [Posttranslational
modification, protein turnover, chaperones].
Length = 103
Score = 26.8 bits (59), Expect = 5.9
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 191 PFHQLRIAYGANKGKNYTEEEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDI 242
F +L A+ +GKN + R+L+ DG+ D+ D +ME +D
Sbjct: 46 TFKKLMDAFSRRQGKNMSSL--RFLF---DGKRIDLDQTPG--DLDMEDNDE 90
>gnl|CDD|212126 cd10815, GH38N_AMII_EcMngB_like, N-terminal catalytic domain of
Escherichia coli alpha-mannosidase MngB and its
bacterial homologs; glycoside hydrolase family 38
(GH38). The bacterial subfamily is represented by
Escherichia coli alpha-mannosidase MngB, which is
encoded by the mngB gene (previously called ybgG). MngB
exhibits alpha-mannosidase activity that converts
2-O-(6-phospho-alpha-mannosyl)-D-glycerate to
mannose-6-phosphate and glycerate in the pathway which
enables use of mannosyl-D-glycerate as a sole carbon
source. A divalent metal ion is required for its
activity.
Length = 270
Score = 27.5 bits (62), Expect = 7.3
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 72 AQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTA 109
++SR+L+ + M +LD LE+ F Y LDGQ++
Sbjct: 18 TEDSRILLVNHMDEVLDELENN---PDFPYYVLDGQSS 52
>gnl|CDD|184956 PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose
2'-O-methyltransferase; Provisional.
Length = 287
Score = 27.5 bits (61), Expect = 8.1
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 72 AQESRVLIFSQMT-RMLDILEDYC 94
E R LIF + T R+LD LED
Sbjct: 160 EAEPRTLIFYESTHRLLDSLEDIV 183
>gnl|CDD|181342 PRK08271, PRK08271, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 623
Score = 27.7 bits (62), Expect = 9.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 105 DGQTAHEDRQRQINDFNMEGSDIFIFM 131
DG+ ED I N +G+ FI++
Sbjct: 289 DGKCKDEDFADFIAKENSKGNSFFIYI 315
Score = 27.7 bits (62), Expect = 9.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 220 DGQTAHEDRQRQINDFNMEGSDIFIFM 246
DG+ ED I N +G+ FI++
Sbjct: 289 DGKCKDEDFADFIAKENSKGNSFFIYI 315
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.412
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,993,361
Number of extensions: 1439634
Number of successful extensions: 1294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1279
Number of HSP's successfully gapped: 47
Length of query: 288
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 192
Effective length of database: 6,679,618
Effective search space: 1282486656
Effective search space used: 1282486656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.0 bits)