RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10684
(288 letters)
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 88.8 bits (219), Expect = 6e-21
Identities = 67/192 (34%), Positives = 95/192 (49%), Gaps = 17/192 (8%)
Query: 2 VLMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLF-----------DGAEPGPP--YT 48
L + V + + + + L+K NHP L DGA P Y+
Sbjct: 32 FLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYS 91
Query: 49 TDEHLVFNSGKMVVLDKLLPKLKAQES-RVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQ 107
T SGKM+VLD +L + S +V++ S T+ LD+ E C R + Y RLDG
Sbjct: 92 TKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGT 151
Query: 108 TAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVR 167
+ + R + + FN S FIFMLS++AGG G+NL A+ +V++D DWNP D QAM R
Sbjct: 152 MSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR 211
Query: 168 EAKILRRGSIKK 179
+ R G K
Sbjct: 212 ---VWRDGQKKT 220
Score = 35.3 bits (80), Expect = 0.006
Identities = 35/70 (50%), Positives = 46/70 (65%)
Query: 214 YLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNP 273
YLY RLDG + + R + + FN S FIFMLS++AGG G+NL A+ +V++D DWNP
Sbjct: 143 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNP 202
Query: 274 QMDLQAMVRT 283
D QAM R
Sbjct: 203 ANDEQAMARV 212
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 128
Score = 79.8 bits (197), Expect = 2e-19
Identities = 46/82 (56%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 168 EAKILRRGSIKKALEAKMSRYRAPFHQLRIAYGANKGKNYTEEEDRYLYCRL-----DGQ 222
E KI RR SIKKAL+ KMSRYRAPFHQLR+ YG NKGKNYTE EDR+L C L D +
Sbjct: 13 EGKIQRRLSIKKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKE 72
Query: 223 TAHEDRQRQINDFNMEGSDIFI 244
+E+ + I D FI
Sbjct: 73 NVYEELRAAIRASPQFRFDWFI 94
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 60.3 bits (145), Expect = 3e-11
Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 59 KMVVLDKLLPKL--KAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQ 116
KM L +++ + + Q S++++F+ + + G K R GQ + E+ +
Sbjct: 144 KMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGL 203
Query: 117 INDFNMEGSDIFI-----FMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVR 167
D F +++T G G+++ D+VV Y+ + +Q R
Sbjct: 204 SQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGR 259
Score = 41.8 bits (97), Expect = 5e-05
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 210 EEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFI-----FMLSTRAGGLGINLATADVV 264
+D R GQ + E+ + D F +++T G G+++ D+V
Sbjct: 182 VKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLV 241
Query: 265 VLYDSDWNPQMDLQAMVRT 283
V Y+ + +Q RT
Sbjct: 242 VFYEPVPSAIRSIQRRGRT 260
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 48.4 bits (114), Expect = 2e-07
Identities = 30/179 (16%), Positives = 68/179 (37%), Gaps = 17/179 (9%)
Query: 3 LMKDIDVVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEHLVFN-SGKMV 61
K A + R ++ + E + + FN K+
Sbjct: 26 REKVYKQFLRARGITLRRAEDFNKIVMASGYDE---RAYEALRAWEEARRIAFNSKNKIR 82
Query: 62 VLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQRQINDFN 121
L ++L + + + +++IF++ ++ + F + +T+ E+R+ + F
Sbjct: 83 KLREILERHR--KDKIIIFTRHNELVY-----RISKVFLIPAITHRTSREEREEILEGFR 135
Query: 122 MEGSDIFIFMLSTRAGGLGINLATADVVVLYDSDWNPQMDLQAMVREAKILRRGSIKKA 180
F ++S++ GI++ A+V V+ + + +Q + R ILR KK
Sbjct: 136 T---GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGR---ILRPSKGKKE 188
Score = 34.1 bits (77), Expect = 0.010
Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 196 RIAYGANKGKNYTEEEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFIFMLSTRAGGLG 255
+I + +L + +T+ E+R+ + F F ++S++ G
Sbjct: 95 KIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRT---GRFRAIVSSQVLDEG 151
Query: 256 INLATADVVVLYDSDWNPQMDLQAMVRT 283
I++ A+V V+ + + +Q + R
Sbjct: 152 IDVPDANVGVIMSGSGSAREYIQRLGRI 179
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 34.9 bits (80), Expect = 0.008
Identities = 13/108 (12%), Positives = 24/108 (22%), Gaps = 10/108 (9%)
Query: 56 NSGKMVVLDKLLPKLKAQESRVLIFSQMTRMLDILEDYCYWRGFKYCRLDGQTAHEDRQR 115
+G++ K +P + R LIF + D L G
Sbjct: 18 TTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPT 77
Query: 116 Q----------INDFNMEGSDIFIFMLSTRAGGLGINLATADVVVLYD 153
+ D I + + +L +
Sbjct: 78 SGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTT 125
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
2262]}
Length = 92
Score = 28.1 bits (63), Expect = 0.36
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 1 MVLMKDIDV----VNGAGKL-EKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEH--- 52
MV M + + + + L ++ L+ +L +P F PG D+
Sbjct: 1 MVDMSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEF----PGIICHLDDPKVA 56
Query: 53 -LVFNSGKMVV 62
L+F+SGK+VV
Sbjct: 57 LLIFSSGKLVV 67
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 101
Score = 28.2 bits (63), Expect = 0.45
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 11/65 (16%)
Query: 6 DIDVVN--GAGKL-EKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEH----LVFNSG 58
I + N + L + L L P F PG Y DE L+F+SG
Sbjct: 7 KIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQF----PGLIYRMDEPRVVLLIFSSG 62
Query: 59 KMVVL 63
KMV+
Sbjct: 63 KMVIT 67
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Sulfolobus acidocaldarius
[TaxId: 2285]}
Length = 92
Score = 27.8 bits (62), Expect = 0.51
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 18 KMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEH----LVFNSGKMVVL 63
+ L + + P F PG + + L+F SGKMVV
Sbjct: 23 TLDLYAMERSVPNVEYDPDQF----PGLIFRLESPKITSLIFKSGKMVVT 68
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP),
C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
2262]}
Length = 89
Score = 27.4 bits (61), Expect = 0.70
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 6 DIDVVN--GAGKL-EKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEH----LVFNSG 58
IDV N +G + + L + + L C P F PG Y E L+F+SG
Sbjct: 7 QIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQF----PGVIYRVKEPKSVILLFSSG 62
Query: 59 KMVVL 63
K+V
Sbjct: 63 KIVCS 67
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 26.5 bits (58), Expect = 1.1
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 15/82 (18%)
Query: 9 VVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTD---EHLVFNSGK------ 59
V+N GK E L + ++ K F+ P P+ + + + SG
Sbjct: 3 VINPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKL 62
Query: 60 ------MVVLDKLLPKLKAQES 75
L+ L+P Q S
Sbjct: 63 AKNKAARATLEILIPDFVKQTS 84
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP),
C-terminal domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 99
Score = 26.6 bits (59), Expect = 1.5
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 18 KMRLQNILMQLRKCSNHPYLFDGAEPGPPYTTDEH----LVFNSGKMVV 62
K+ L+ I +Q R +P F E L+F SGKMV
Sbjct: 21 KLDLKAIALQARNAEYNPKRF----AAVIMRIREPKTTALIFASGKMVC 65
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP),
C-terminal domain {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 83
Score = 25.8 bits (57), Expect = 2.1
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 18 KMRLQNILMQLRKCSN-HPYLFDGAEPGPPYTTDEH----LVFNSGKMVVL 63
+RL+ + S+ P LF PG Y L+F SGK+V+
Sbjct: 12 PIRLEGLAYSHAAFSSYEPELF----PGLIYRMKVPKIVLLIFVSGKIVIT 58
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 72
Score = 24.7 bits (54), Expect = 4.1
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 141 INLATADVVVLYDSDWNPQMDLQAMVREA 169
I+L T + V YD++ ++ ++ +
Sbjct: 35 ISLVTNECQVTYDNEVTAD-SIKEIIEDC 62
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 25.4 bits (56), Expect = 6.8
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 209 EEEDRYLYCRLDGQTAHEDRQRQINDFNMEGSDIFI 244
+ Y +C +D + +I +F +E +F
Sbjct: 133 KLLKEYGFCIMDN------HKERIANFKIEPPGLFR 162
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1207
Score = 25.6 bits (55), Expect = 9.8
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Query: 9 VVNGAGKLEKMRLQNILMQLRKCSNHPYLFDGAEPGP 45
++NG+ EK+ ++ Q R N +F A P P
Sbjct: 187 IINGS---EKV----LIAQERSAGNIVQVFKKAAPSP 216
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.412
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,094,204
Number of extensions: 50290
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 23
Length of query: 288
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,254,276
Effective search space: 255872304
Effective search space used: 255872304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.9 bits)