Query psy10686
Match_columns 147
No_of_seqs 179 out of 1035
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 16:01:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05381 SCP_PR-1_like SCP_PR-1 100.0 1.2E-33 2.6E-38 191.0 9.1 116 1-130 21-136 (136)
2 cd05384 SCP_PRY1_like SCP_PRY1 100.0 4.4E-31 9.5E-36 177.0 10.5 107 1-126 23-129 (129)
3 cd05382 SCP_GAPR-1_like SCP_GA 100.0 8.6E-31 1.9E-35 176.0 11.2 110 1-124 23-132 (132)
4 KOG3017|consensus 100.0 2E-30 4.3E-35 188.6 11.7 130 1-141 67-209 (225)
5 smart00198 SCP SCP / Tpx-1 / A 100.0 1.1E-29 2.3E-34 173.0 8.8 110 1-121 34-144 (144)
6 cd05385 SCP_GLIPR-1_like SCP_G 100.0 8.2E-30 1.8E-34 173.9 8.0 104 1-121 28-144 (144)
7 cd05383 SCP_CRISP SCP_CRISP: S 100.0 1.3E-29 2.8E-34 171.8 6.9 104 1-121 28-138 (138)
8 cd05559 SCP_HrTT-1 SCP_HrTT-1: 100.0 6.8E-29 1.5E-33 167.9 8.1 104 1-119 26-136 (136)
9 cd05380 SCP_euk SCP_euk: SCP-l 99.9 8.5E-27 1.8E-31 158.1 8.2 109 1-119 33-144 (144)
10 cd00168 SCP SCP: SCP-like extr 99.9 9.2E-26 2E-30 149.7 9.2 98 1-119 22-122 (122)
11 PF00188 CAP: Cysteine-rich se 99.6 5.7E-16 1.2E-20 100.4 7.3 107 1-118 18-124 (124)
12 TIGR02909 spore_YkwD uncharact 99.0 4.6E-09 9.9E-14 70.1 8.1 74 1-104 25-114 (127)
13 cd05379 SCP_bacterial SCP_bact 98.8 4.6E-08 1E-12 63.9 7.6 85 1-118 21-121 (122)
14 COG2340 Uncharacterized protei 95.5 0.007 1.5E-07 43.6 1.5 51 1-58 101-167 (207)
15 KOG0286|consensus 74.2 5.1 0.00011 30.6 3.7 35 87-125 78-112 (343)
16 PF06072 Herpes_US9: Alphaherp 38.1 1.4 3.1E-05 25.1 -3.5 27 116-146 1-28 (60)
17 KOG2943|consensus 20.2 1.9E+02 0.0042 21.7 3.8 40 76-115 91-141 (299)
No 1
>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=100.00 E-value=1.2e-33 Score=191.04 Aligned_cols=116 Identities=32% Similarity=0.546 Sum_probs=96.7
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCCCCccceeecccccCCCCchHHHHHHHHHHHHHhhcccccccCCCCccCCCCC
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTG 80 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ 80 (147)
.||++||..||.||++|+..|.+.|+.. .+||||+ +... ....+..+|+.|++|...|+ | ..+ .+..+
T Consensus 21 ~Wd~~La~~A~~~a~~~~~~c~~~~~~~-~~GeNi~-~~~~----~~~~~~~~v~~W~~e~~~y~--~--~~~--~~~~~ 88 (136)
T cd05381 21 KWDDTLAAYAQRYANQRRGDCALVHSNG-PYGENLF-WGSG----GNWSAADAVASWVSEKKYYD--Y--DSN--TCAAG 88 (136)
T ss_pred eECHHHHHHHHHHHHHhcCCCCcccCCC-CCCceEE-EecC----CCCCHHHHHHHHHhccccCC--C--CCC--CcCCC
Confidence 5999999999999999887788888764 4899998 5433 12356789999999999999 8 655 55545
Q ss_pred CCCccceeeeeccCceeeEEEEEecCCCCceEEEEEeecCCCCccccccc
Q psy10686 81 NPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGRFKE 130 (147)
Q Consensus 81 ~~~~hftqmvW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~p~GN~~g~~~~ 130 (147)
..++|||||||++|++||||++.|.... ..+|||+|+|+||+.|+.+|
T Consensus 89 ~~~~hftq~vw~~t~~vGCa~~~c~~~~--~~~vvC~Y~p~gn~~g~~~Y 136 (136)
T cd05381 89 KMCGHYTQVVWRNTTRVGCARVTCDNGG--GVFIICNYDPPGNYIGQRPY 136 (136)
T ss_pred ccchHHHHHHHHhcCEeceEEEEeCCCC--cEEEEEEeeCCCCCCCCCCC
Confidence 7899999999999999999999986522 47899999999999998654
No 2
>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.
Probab=99.97 E-value=4.4e-31 Score=176.96 Aligned_cols=107 Identities=36% Similarity=0.639 Sum_probs=90.3
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCCCCccceeecccccCCCCchHHHHHHHHHHHHHhhcccccccCCCCccCCCCC
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTG 80 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ 80 (147)
+||++||..|+.||++|+..+.+.|+.. .+|||++ .+.. .+..+|+.|++|..+|+ | ..+ .+.
T Consensus 23 ~w~~~La~~A~~~a~~c~~~~~~~~~~~-~~geNi~-~~~~-------~~~~~v~~W~~e~~~y~--~--~~~--~~~-- 85 (129)
T cd05384 23 TWNNTLAEYAQDYANSYDCSGNLAHSGG-PYGENLA-AGYP-------SGTSAVDAWYDEIEDYD--Y--SNP--GFS-- 85 (129)
T ss_pred ccCHHHHHHHHHHHHHhccCCceecCCC-CCCcEEE-EecC-------CHHHHHHHHHhhhhhCC--C--CCC--CCC--
Confidence 5999999999999999987777888765 5899997 4321 46789999999999999 8 555 443
Q ss_pred CCCccceeeeeccCceeeEEEEEecCCCCceEEEEEeecCCCCccc
Q psy10686 81 NPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILG 126 (147)
Q Consensus 81 ~~~~hftqmvW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~p~GN~~g 126 (147)
..++|||||||++|++||||++.|.. ....++||+|+|+||+.|
T Consensus 86 ~~~~h~tqmvw~~t~~vGCa~~~c~~--~~~~~~vC~Y~p~Gn~~g 129 (129)
T cd05384 86 EATGHFTQLVWKSTTQVGCAYKDCGG--AWGWYIVCEYDPAGNVIG 129 (129)
T ss_pred CcccchhhhhhhccceeeeEEEEeCC--CCeEEEEEEEECCCCCCc
Confidence 78999999999999999999999864 225789999999999875
No 3
>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.
Probab=99.97 E-value=8.6e-31 Score=175.95 Aligned_cols=110 Identities=40% Similarity=0.751 Sum_probs=92.6
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCCCCccceeecccccCCCCchHHHHHHHHHHHHHhhcccccccCCCCccCCCCC
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTG 80 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ 80 (147)
+||++|+..||.||++|+..+.+.|++...+||||+ +.... .....+..+|+.|++|..+|+ | ..+ ...
T Consensus 23 ~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~-~~~~~--~~~~~~~~~v~~W~~e~~~y~--~--~~~--~~~-- 91 (132)
T cd05382 23 KLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLA-YASGS--GPDLTGEEAVDSWYNEIKKYD--F--NKP--GFS-- 91 (132)
T ss_pred eeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeE-EecCC--CCCCCHHHHHHHHHhccccCC--C--CCC--CCC--
Confidence 599999999999999998877889988667999998 44321 234578899999999999999 8 544 433
Q ss_pred CCCccceeeeeccCceeeEEEEEecCCCCceEEEEEeecCCCCc
Q psy10686 81 NPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNI 124 (147)
Q Consensus 81 ~~~~hftqmvW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~p~GN~ 124 (147)
..++|||||||+++++||||++.|.. ..+++||+|+|+||+
T Consensus 92 ~~~gh~tqmvw~~t~~vGCa~~~~~~---~~~~~vC~Y~p~Gn~ 132 (132)
T cd05382 92 SKTGHFTQVVWKSSTELGVGVAKSKK---GCVYVVARYRPAGNV 132 (132)
T ss_pred CCCCCeEEeEecCCCceeeEEEEcCC---CCEEEEEEEeCCCCC
Confidence 78999999999999999999999754 248899999999996
No 4
>KOG3017|consensus
Probab=99.97 E-value=2e-30 Score=188.62 Aligned_cols=130 Identities=32% Similarity=0.529 Sum_probs=102.6
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCC-----CCCccceeecccccC--CCCchHHHHHHHHHHHHHhhcccccccCCCC
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRP-----DNKFGENIFFYTSSF--YVDDKEAIKKAVTAWYNEIEDYREYFDLEPP 73 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~-----~~~~GeN~~~~~~~~--~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~ 73 (147)
+||++||..||.||++|. +.|+. ...+||||+ +.... ..+.......+++.|+.|...|+ + ..+
T Consensus 67 ~Wd~~La~~Aq~~a~~c~----~~~~~~~~~~~~~~GeNl~-~~~~~~~~~~~~~~~~~a~~~w~~e~~~~~--~--~~~ 137 (225)
T KOG3017|consen 67 KWDDELAALAQNWANTCP----FGHDKCVHTSFGPYGENLA-WGWSSNPPLSLDTSGALAVEAWESEFQEYD--W--SSN 137 (225)
T ss_pred cCCHHHHHHHHHHHhhCC----cccCccccccCCCCcccce-eeccCCCCccccccHHHHHHHHHHHHHHcc--C--ccc
Confidence 599999999999999995 55553 456799998 44331 12233667889999999999999 8 554
Q ss_pred ccCCCC---CCCCccceeeeeccCceeeEEEEEecCCC--CceEEEEEeecCCCCc-cccccccCCCCCccCcc
Q psy10686 74 LEALTT---GNPTGHFTQVVWNGTTEVGLGLSRNASSD--FHKVIVVANYAPPGNI-LGRFKENVPMPAEWKKK 141 (147)
Q Consensus 74 ~~~~~~---~~~~~hftqmvW~~t~~vGCa~~~c~~~~--~~~~~~VC~Y~p~GN~-~g~~~~nv~~p~~~~~~ 141 (147)
.+.. +..+||||||||++|++||||++.|.... ...+++||+|+|+||. .++.++..++|++.+..
T Consensus 138 --~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~~~y~~g~~cs~Cp~ 209 (225)
T KOG3017|consen 138 --TCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGEIPYKGGKPCSACPS 209 (225)
T ss_pred --ccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCCCcCCCCCccCCCCC
Confidence 4442 57999999999999999999999987653 3368999999999555 45799999988887654
No 5
>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.
Probab=99.96 E-value=1.1e-29 Score=172.99 Aligned_cols=110 Identities=35% Similarity=0.600 Sum_probs=89.2
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCCCCccceeecccccCCCCchHHHHHHHHHHHHHhhcccccccCCCCccCCCC-
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTT- 79 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~- 79 (147)
+||++||..|+.||++| .+.|+....+|||++ +......+....+..+|+.||+|..+|+ + ..+ .+..
T Consensus 34 ~Wd~~La~~A~~~a~~C----~~~~~~~~~~GeNi~-~~~~~~~~~~~~~~~av~~W~~e~~~y~--~--~~~--~~~~~ 102 (144)
T smart00198 34 TWDCELASSAQNWANQC----PFGHSTPRGYGENLA-WWSSSTDLPITYASAAVQLWYDEFQDYG--Y--SSN--TCKDT 102 (144)
T ss_pred cCCHHHHHHHHHHHHhC----CCcCCCcCCcCcceE-EecccCcccchhHHHHHHHHHHHHHHcC--C--CCC--ccccC
Confidence 59999999999999999 578887668999998 4332222355788999999999999999 8 554 3332
Q ss_pred CCCCccceeeeeccCceeeEEEEEecCCCCceEEEEEeecCC
Q psy10686 80 GNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPP 121 (147)
Q Consensus 80 ~~~~~hftqmvW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~p~ 121 (147)
+..++|||||||+++++||||++.|..+....+++||+|+|+
T Consensus 103 ~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~ 144 (144)
T smart00198 103 NGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP 144 (144)
T ss_pred ccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence 478999999999999999999999865433357999999984
No 6
>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.96 E-value=8.2e-30 Score=173.87 Aligned_cols=104 Identities=36% Similarity=0.531 Sum_probs=84.0
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCC-----------CCCccceeecccccCCCCchHHHHHHHHHHHHHhhccccccc
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRP-----------DNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFD 69 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~-----------~~~~GeN~~~~~~~~~~~~~~~~~~~v~~W~~e~~~y~~~~~ 69 (147)
+||++||..||.||++| .+.|++ +..+||||+ +... ....+.++|+.||+|..+|+ |
T Consensus 28 ~Wd~~La~~Aq~~a~~C----~~~~~~~~~~~~~~~~~~~~~GeNi~-~~~~----~~~~~~~av~~W~~e~~~y~--~- 95 (144)
T cd05385 28 TWDAALAKTARAWAKKC----KFKHNIYLGKRYKCHPKFTSVGENIW-LGSI----YIFSPKNAVTSWYNEGKFYD--F- 95 (144)
T ss_pred ccCHHHHHHHHHHHhcC----CCCCCchhhcccccccccCcccceee-eccc----CCCCHHHHHHHHHHHHHhCC--C-
Confidence 59999999999999999 466654 246899997 4432 22467889999999999999 8
Q ss_pred CCCCccCCCCCCCCccceeeeeccCceeeEEEEEecCCC--CceEEEEEeecCC
Q psy10686 70 LEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSD--FHKVIVVANYAPP 121 (147)
Q Consensus 70 ~~~~~~~~~~~~~~~hftqmvW~~t~~vGCa~~~c~~~~--~~~~~~VC~Y~p~ 121 (147)
..+ .+. ..++|||||||++|++||||++.|.... ....+|||+|+|+
T Consensus 96 -~~~--~~~--~~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~ 144 (144)
T cd05385 96 -DTN--SCS--RVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA 144 (144)
T ss_pred -CCC--CCC--CcccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence 655 454 6899999999999999999999986533 2357899999984
No 7
>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t
Probab=99.96 E-value=1.3e-29 Score=171.77 Aligned_cols=104 Identities=31% Similarity=0.566 Sum_probs=84.1
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCC-------CCccceeecccccCCCCchHHHHHHHHHHHHHhhcccccccCCCC
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRPD-------NKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPP 73 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~~-------~~~GeN~~~~~~~~~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~ 73 (147)
+||++||..|+.||++| .+.|++. ..+||||+ .... ...+.++|+.||+|..+|+ | +.+
T Consensus 28 ~Wd~~La~~A~~~a~~C----~~~~~~~~~~~~~~~~~GeNl~-~~~~-----~~~~~~av~~W~~e~~~y~--~--~~~ 93 (138)
T cd05383 28 EWNEEAAQNAKKWANTC----NLTHSPPNGRTIGGITCGENIF-MSSY-----PRSWSDVIQAWYDEYKDFK--Y--GVG 93 (138)
T ss_pred EeCHHHHHHHHHHHhcC----CCcCCchhhcccCCCCcceeee-ccCC-----CCCHHHHHHHHHHHHHhCC--C--CCC
Confidence 59999999999999999 5777752 25799998 4332 2355789999999999999 8 554
Q ss_pred ccCCCCCCCCccceeeeeccCceeeEEEEEecCCCCceEEEEEeecCC
Q psy10686 74 LEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPP 121 (147)
Q Consensus 74 ~~~~~~~~~~~hftqmvW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~p~ 121 (147)
.+..+..++|||||||++|++||||++.|..+. ..+++||+|+|+
T Consensus 94 --~~~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~-~~~~~vC~Y~P~ 138 (138)
T cd05383 94 --ATPPGAVVGHYTQIVWYKSYLVGCAVAYCPNSK-YKYFYVCHYCPA 138 (138)
T ss_pred --CCCCCCchhhHHHHHHHhccccceEEEECCCCC-cCEEEEEecCCC
Confidence 334458899999999999999999999986542 258899999985
No 8
>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.96 E-value=6.8e-29 Score=167.86 Aligned_cols=104 Identities=32% Similarity=0.558 Sum_probs=84.8
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCCC---CccceeecccccCCCCchHHHHHHHHHHHHHhhcccccccCCCCccCC
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRPDN---KFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEAL 77 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~~~---~~GeN~~~~~~~~~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~ 77 (147)
+||++||..||.||++| .+.|++.. .+||||+ .... ....+..+|+.||+|..+|+ | ..+ .+
T Consensus 26 ~Wd~~La~~A~~~a~~C----~~~~~~~~~~~~~GeNl~-~~~~----~~~~~~~~v~~W~~e~~~y~--~--~~~--~~ 90 (136)
T cd05559 26 TWDEELAALAEAYARKC----IWDHNPDRGHLRVGENLF-ISTG----PPFDATKAVEDWNNEKLDYN--Y--NTN--TC 90 (136)
T ss_pred ccCHHHHHHHHHHHHhc----cccCCCcccCCCceeeee-ecCC----CCCCHHHHHHHHHHHHHhcC--C--CCC--CC
Confidence 59999999999999999 57887643 6999998 4332 23457889999999999999 8 555 55
Q ss_pred CCCCCCccceeeeeccCceeeEEEEEecCCCC----ceEEEEEeec
Q psy10686 78 TTGNPTGHFTQVVWNGTTEVGLGLSRNASSDF----HKVIVVANYA 119 (147)
Q Consensus 78 ~~~~~~~hftqmvW~~t~~vGCa~~~c~~~~~----~~~~~VC~Y~ 119 (147)
..+..++|||||||++|++||||++.|..... ...++||+|+
T Consensus 91 ~~~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~ 136 (136)
T cd05559 91 APNKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG 136 (136)
T ss_pred CCCCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence 55678999999999999999999999865321 3578999996
No 9
>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.
Probab=99.94 E-value=8.5e-27 Score=158.14 Aligned_cols=109 Identities=39% Similarity=0.608 Sum_probs=86.2
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCCC---CccceeecccccCCCCchHHHHHHHHHHHHHhhcccccccCCCCccCC
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRPDN---KFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEAL 77 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~~~---~~GeN~~~~~~~~~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~ 77 (147)
+||++||..|+.||++| .+.|+... .+||||+ +...........+.++|+.||+|..+|+ +... + ..
T Consensus 33 ~Wd~~La~~A~~~a~~C----~~~~~~~~~~~~~GeNl~-~~~~~~~~~~~~~~~~v~~W~~e~~~~~--~~~~-~--~~ 102 (144)
T cd05380 33 KWDDELAALAQNWAKTC----VFEHSPCRNTGGVGQNLA-AGSSTGSTVEELAEDAVNAWYNELKDYG--FGSN-P--TN 102 (144)
T ss_pred eeCHHHHHHHHHHHhcC----CCcCCcccCCCCCCcEEE-EeccCCCCHHHHHHHHHHHHHHHHHHcC--CCcC-c--cc
Confidence 59999999999999999 57787753 7999998 4433111345678999999999999999 7222 1 22
Q ss_pred CCCCCCccceeeeeccCceeeEEEEEecCCCCceEEEEEeec
Q psy10686 78 TTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYA 119 (147)
Q Consensus 78 ~~~~~~~hftqmvW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~ 119 (147)
.....++|||||||+++++||||++.|........++||+|+
T Consensus 103 ~~~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~ 144 (144)
T cd05380 103 NFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144 (144)
T ss_pred ccccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence 335889999999999999999999998654334689999995
No 10
>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as
Probab=99.93 E-value=9.2e-26 Score=149.66 Aligned_cols=98 Identities=40% Similarity=0.643 Sum_probs=81.5
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCCC---CccceeecccccCCCCchHHHHHHHHHHHHHhhcccccccCCCCccCC
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRPDN---KFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEAL 77 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~~~---~~GeN~~~~~~~~~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~ 77 (147)
+||++|+..|+.||++| .+.|++.. .+||||+ +... . ..+..+|+.|++|..+|+ | ..+ ..
T Consensus 22 ~wd~~La~~A~~~a~~c----~~~h~~~~~~~~~geNi~-~~~~----~-~~~~~~v~~W~~e~~~y~--~--~~~--~~ 85 (122)
T cd00168 22 SWDAELAKTAQNYANRC----IFKHSGEDGRGFVGENLA-AGSY----D-MTGPAAVQAWYNEIKNYN--F--GQP--GF 85 (122)
T ss_pred ccCHHHHHHHHHHHhhc----cccCCCcccCCCCCceeE-EecC----C-CCHHHHHHHHHHHHHhCC--C--CCC--CC
Confidence 59999999999999999 68888743 6899998 5432 1 467899999999999999 8 544 33
Q ss_pred CCCCCCccceeeeeccCceeeEEEEEecCCCCceEEEEEeec
Q psy10686 78 TTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYA 119 (147)
Q Consensus 78 ~~~~~~~hftqmvW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~ 119 (147)
. ..++||+||||+++++||||++.|.. . ..++||+|.
T Consensus 86 ~--~~~~h~~qmvw~~s~~vGca~~~~~~--~-~~~~vC~Y~ 122 (122)
T cd00168 86 S--SGTGHYTQVVWKNTTKIGCGVAFCGS--N-SYYVVCNYG 122 (122)
T ss_pred C--CCccchhhhhcccCCeeeeEEEEcCC--C-CEEEEEeCc
Confidence 3 77999999999999999999999653 2 478999995
No 11
>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....
Probab=99.65 E-value=5.7e-16 Score=100.37 Aligned_cols=107 Identities=26% Similarity=0.382 Sum_probs=70.2
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCCCCccceeecccccCCCCchHHHHHHHHHHHHHhhcccccccCCCCccCCCCC
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTG 80 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~~~~v~~W~~e~~~y~~~~~~~~~~~~~~~~ 80 (147)
.||++|+..|+.+|+.|. ..+......|+++. .... ...........+..|+.+...+. +......... .
T Consensus 18 ~~d~~L~~~A~~~a~~~~----~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~ 87 (124)
T PF00188_consen 18 KWDPELAKAAQAHAKYCA----NSNSLSHDSGENGS-QSSR-FGSYSDAQVTAVENWYSESKNYN--FQNQSIFNSW--M 87 (124)
T ss_dssp EE-HHHHHHHHHHHTTTC----SSEETTEESEEEEE-EESS-TTSHHHHHHHHHHHHHGGGGGEE--TTCSTEESST--T
T ss_pred eeCHHHHHHHHHhhHHhh----hhcccccccCCCCc-cccc-cccccchhhHHHHHHHhcccccc--cccchhhhcc--C
Confidence 499999999999999995 22333445677776 3222 11122222233999999999988 5100110122 3
Q ss_pred CCCccceeeeeccCceeeEEEEEecCCCCceEEEEEee
Q psy10686 81 NPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANY 118 (147)
Q Consensus 81 ~~~~hftqmvW~~t~~vGCa~~~c~~~~~~~~~~VC~Y 118 (147)
..++||+||+|..+++||||++.|..... .+++||+|
T Consensus 88 ~~~~h~~~ll~~~~~~iGca~~~~~~~~~-~~~~vc~y 124 (124)
T PF00188_consen 88 NSPGHFTNLLWPNTTRIGCAVANCPNGKN-NYYWVCNY 124 (124)
T ss_dssp STCHHHHHHT-TT--EEEEEEEEETTSSS-EEEEEEEE
T ss_pred CchhhhhhhhcCCCCEEEEEEEEeCCCCe-eEEEEEEC
Confidence 77899999999999999999999865443 58999998
No 12
>TIGR02909 spore_YkwD uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
Probab=98.97 E-value=4.6e-09 Score=70.06 Aligned_cols=74 Identities=26% Similarity=0.414 Sum_probs=58.9
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCC----------------CCccceeecccccCCCCchHHHHHHHHHHHHHhhcc
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRPD----------------NKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDY 64 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~~----------------~~~GeN~~~~~~~~~~~~~~~~~~~v~~W~~e~~~y 64 (147)
.||+.|+..|+.||+.++..+.+.|... ..+||||+ ++. .++..+++.|+
T Consensus 25 ~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~-~g~-------~~~~~~v~~W~------ 90 (127)
T TIGR02909 25 KADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIA-YGN-------STVEAVHNAWM------ 90 (127)
T ss_pred ccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeee-ccC-------CCHHHHHHHHH------
Confidence 5999999999999999998888888853 13589997 432 24567888883
Q ss_pred cccccCCCCccCCCCCCCCccceeeeeccCceeeEEEEEe
Q psy10686 65 REYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRN 104 (147)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~hftqmvW~~t~~vGCa~~~c 104 (147)
. ..+|+.+|+|.+.+.||||++.+
T Consensus 91 ------~----------S~gH~~nil~~~~~~~Gvg~~~~ 114 (127)
T TIGR02909 91 ------N----------SPGHRANILNPNYTEIGVGYVEG 114 (127)
T ss_pred ------c----------CHhHHHHHcCCCcCeEeEEEEeC
Confidence 1 13689999999999999999983
No 13
>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.
Probab=98.77 E-value=4.6e-08 Score=63.91 Aligned_cols=85 Identities=29% Similarity=0.384 Sum_probs=63.0
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCCCC----------------ccceeecccccCCCCchHHHHHHHHHHHHHhhcc
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRPDNK----------------FGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDY 64 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~~~~----------------~GeN~~~~~~~~~~~~~~~~~~~v~~W~~e~~~y 64 (147)
+||.+|+..|+.+|..++....+.|.+... +|||++ +.. ..+..+++.|++
T Consensus 21 ~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~-~~~-------~~~~~~~~~w~~----- 87 (122)
T cd05379 21 TWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIA-YGY-------STAEAAVDGWMN----- 87 (122)
T ss_pred ccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhc-ccC-------CCHHHHHHHHhC-----
Confidence 589999999999999999887888887432 277776 321 156788888831
Q ss_pred cccccCCCCccCCCCCCCCccceeeeeccCceeeEEEEEecCCCCceEEEEEee
Q psy10686 65 REYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANY 118 (147)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~hftqmvW~~t~~vGCa~~~c~~~~~~~~~~VC~Y 118 (147)
..+|+.+|++...+++|||+... .++ ..++|..|
T Consensus 88 -----------------~~~H~~~ll~~~~~~~Gvg~~~~--~~~-~~y~~~~f 121 (122)
T cd05379 88 -----------------SPGHRANILNPDYTEVGVGVAYG--GDG-GYYWVQVF 121 (122)
T ss_pred -----------------CHhHHHHHcCCCcceeeEEEEeC--CCC-CeEEEEec
Confidence 14588999999999999999983 332 35555554
No 14
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=95.50 E-value=0.007 Score=43.65 Aligned_cols=51 Identities=31% Similarity=0.443 Sum_probs=38.6
Q ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCC----------------CCccceeecccccCCCCchHHHHHHHHHHH
Q psy10686 1 MLQFQLSALALDWANQLLEADKFSHRPD----------------NKFGENIFFYTSSFYVDDKEAIKKAVTAWY 58 (147)
Q Consensus 1 ~Wd~~La~~A~~~a~~C~~~~~~~h~~~----------------~~~GeN~~~~~~~~~~~~~~~~~~~v~~W~ 58 (147)
.||.+|+..|+.+|...+....+.|... ..+||||+ ++.. . ....+|+.|.
T Consensus 101 ~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa-~g~~----~--~~~~~v~~Wl 167 (207)
T COG2340 101 AWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIA-YGSN----D--PPEAAVDGWL 167 (207)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceee-cCCC----C--chHHHHHHhc
Confidence 4999999999999999998889999873 13688887 5432 1 1167788884
No 15
>KOG0286|consensus
Probab=74.19 E-value=5.1 Score=30.65 Aligned_cols=35 Identities=20% Similarity=0.435 Sum_probs=25.4
Q ss_pred eeeeeccCceeeEEEEEecCCCCceEEEEEeecCCCCcc
Q psy10686 87 TQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNIL 125 (147)
Q Consensus 87 tqmvW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~p~GN~~ 125 (147)
..+||+.-|.---....- +. ..++.|.|+|.||.+
T Consensus 78 klIvWDs~TtnK~haipl--~s--~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPL--PS--SWVMTCAYSPSGNFV 112 (343)
T ss_pred eEEEEEcccccceeEEec--Cc--eeEEEEEECCCCCeE
Confidence 478999877655544442 12 489999999999976
No 16
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=38.13 E-value=1.4 Score=25.15 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=13.7
Q ss_pred EeecCCCCc-cccccccCCCCCccCcchhhcc
Q psy10686 116 ANYAPPGNI-LGRFKENVPMPAEWKKKKSQRR 146 (147)
Q Consensus 116 C~Y~p~GN~-~g~~~~nv~~p~~~~~~~~~~~ 146 (147)
|+|+-+.|= .++|..- +++++++++||
T Consensus 1 cYYSESDnETA~~FL~R----vGr~q~~~r~R 28 (60)
T PF06072_consen 1 CYYSESDNETATEFLRR----VGRQQHASRRR 28 (60)
T ss_pred CCcCccccccHHHHHHH----HhHHHHHHHHH
Confidence 677766552 2444443 44555444433
No 17
>KOG2943|consensus
Probab=20.23 E-value=1.9e+02 Score=21.73 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=26.6
Q ss_pred CCCCCCCCccce-----------eeeeccCceeeEEEEEecCCCCceEEEE
Q psy10686 76 ALTTGNPTGHFT-----------QVVWNGTTEVGLGLSRNASSDFHKVIVV 115 (147)
Q Consensus 76 ~~~~~~~~~hft-----------qmvW~~t~~vGCa~~~c~~~~~~~~~~V 115 (147)
.+.-|...+||| .+-|.-+...||+++.-..+++.++++.
T Consensus 91 ~YelGndfg~i~I~s~dv~~~ve~v~~p~~~~~g~~~~~v~dPdGykF~l~ 141 (299)
T KOG2943|consen 91 KYELGNDFGGITIASDDVFSKVEKVNAPGGKGSGCGIAFVKDPDGYKFYLI 141 (299)
T ss_pred ceeccCCcccEEEeHHHHHHHHHHhcCcCCcccceEEEEEECCCCcEEEEe
Confidence 344456777776 3446666888999998777777544443
Done!