RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10686
(147 letters)
>gnl|CDD|240182 cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-like extracellular
protein domain, golgi-associated plant pathogenesis
related protein (GAPR)-like sub-family. The wider family
of SCP containing proteins includes plant
pathogenesis-related protein 1 (PR-1), CRISPs, mammalian
cysteine-rich secretory proteins, which combine SCP with
a C-terminal cysteine rich domain, and allergen 5 from
vespid venom. It has been proposed that SCP domains may
function as endopeptidases. The human GAPR-1 protein has
been reported to dimerize, and such a dimer may form an
active site containing a catalytic triad. GAPR-1 and
GLIPR-2 appear to be synonyms.
Length = 132
Score = 112 bits (282), Expect = 8e-33
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 14/119 (11%)
Query: 6 LSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYR 65
L+ A WA +L + K H + +GEN+ + + S ++AV +WYNEI+ Y
Sbjct: 28 LAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGS---GPDLTGEEAVDSWYNEIKKYD 84
Query: 66 EYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNI 124
F+ TGHFTQVVW +TE+G+G++++ V VVA Y P GN+
Sbjct: 85 --FNKPGFSSK------TGHFTQVVWKSSTELGVGVAKSKKG---CVYVVARYRPAGNV 132
>gnl|CDD|240180 cd05380, SCP_euk, SCP_euk: SCP-like extracellular protein domain,
as found mainly in eukaryotes. This family includes
plant pathogenesis-related protein 1 (PR-1), CRISPs,
mammalian cysteine-rich secretory proteins, and allergen
5 from vespid venom. It has been proposed that SCP
domains may function as endopeptidases.
Length = 144
Score = 80.6 bits (199), Expect = 3e-20
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 5 QLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDY 64
+L+ALA +WA + R G+N+ SS +E + AV AWYNE++DY
Sbjct: 37 ELAALAQNWAKTCVFE-HSPCRNTGGVGQNLA-AGSSTGSTVEELAEDAVNAWYNELKDY 94
Query: 65 REYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYA 119
+ + GHFTQ+VW TT+VG ++R +K +VV NY+
Sbjct: 95 GFGSNPTN-----NFNSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS 144
>gnl|CDD|240184 cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like extracellular
protein domain, PRY1-like sub-family restricted to
fungi. The wider family of SCP containing proteins
includes plant pathogenesis-related protein 1 (PR-1),
CRISPs, mammalian cysteine-rich secretory proteins, and
allergen 5 from vespid venom. It has been proposed that
SCP domains may function as endopeptidases. PRY1 is a
yeast protein that is up-regulated in core ESCRT
mutants. This PRY1-like group also contains fruiting
body proteins SC7/14 from Schizophyllum commune.
Length = 129
Score = 77.3 bits (191), Expect = 3e-19
Identities = 41/123 (33%), Positives = 54/123 (43%), Gaps = 23/123 (18%)
Query: 6 LSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYR 65
L+ A D+AN + +H +GEN+ S AV AWY+EIEDY
Sbjct: 28 LAEYAQDYANSYDCSGNLAHSG-GPYGENLAAGYPS--------GTSAVDAWYDEIEDY- 77
Query: 66 EYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLS--RNASSDFHKVIVVANYAPPGN 123
D P TGHFTQ+VW TT+VG A + +V Y P GN
Sbjct: 78 ---DYSNP----GFSEATGHFTQLVWKSTTQVGCAYKDCGGAWGWY----IVCEYDPAGN 126
Query: 124 ILG 126
++G
Sbjct: 127 VIG 129
>gnl|CDD|214553 smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of
extracellular domains. Human glioma
pathogenesis-related protein GliPR and the plant
pathogenesis-related protein represent functional links
between plant defense systems and human immune system.
This family has no known function.
Length = 144
Score = 77.4 bits (191), Expect = 4e-19
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 11/117 (9%)
Query: 5 QLSALALDWANQLLEADKFSH-RPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIED 63
+L++ A +WANQ F H P +GEN+ +++SS + D A AV WY+E +D
Sbjct: 38 ELASSAQNWANQCP----FGHSTPRPGYGENLAWWSSSTALPDTYA-SAAVQLWYDEFQD 92
Query: 64 YREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAP 120
Y T GH+TQVVW T +VG G++ K +VV NY P
Sbjct: 93 YGY-----SSNTCKDTNGKIGHYTQVVWAKTYKVGCGVANCPDGTKKKTVVVCNYDP 144
>gnl|CDD|215778 pfam00188, CAP, Cysteine-rich secretory protein family. This is a
large family of cysteine-rich secretory proteins,
antigen 5, and pathogenesis-related 1 proteins (CAP)
that are found in a wide range of organisms, including
prokaryotes and non-vertebrate eukaryotes, The nine
subfamilies of the mammalian CAP 'super'family include:
the human glioma pathogenesis-related 1 (GLIPR1), Golgi
associated pathogenesis related-1 (GAPR1) proteins,
peptidase inhibitor 15 (PI15), peptidase inhibitor 16
(PI16), cysteine-rich secretory proteins (CRISPs), CRISP
LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain
containing 2 (CRISPLD2), mannose receptor like and the
R3H domain containing like proteins. Members are most
often secreted and have an extracellular endocrine or
paracrine function and are involved in processes
including the regulation of extracellular matrix and
branching morphogenesis, potentially as either proteases
or protease inhibitors; in ion channel regulation in
fertility; as tumour suppressor or pro-oncogenic genes
in tissues including the prostate; and in cell-cell
adhesion during fertilisation. The overall protein
structural conservation within the CAP 'super'family
results in fundamentally similar functions for the CAP
domain in all members, yet the diversity outside of this
core region dramatically alters the target specificity
and, thus, the biological consequences. The
Ca++-chelating function would fit with the various
signalling processes (e.g. the CRISP proteins) that
members of this family are involved in, and also the
sequence and structural evidence of a conserved pocket
containing two histidines and a glutamate. It also may
explain how helothermine from Heloderma horridum
horridum blocks the Ca++ transporting ryanodine
receptors.
Length = 121
Score = 63.0 bits (153), Expect = 1e-13
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query: 5 QLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDY 64
L+A A D A + F H GEN+ + + DD AV WY+E +DY
Sbjct: 22 TLAAAAQDHAAYCADNGYFGHDY----GENLALVSVAGKADDPGV--AAVENWYDEAKDY 75
Query: 65 REYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANY 118
+ + GH T ++W +T+VG +++ VV NY
Sbjct: 76 DAAVGIN------AWMSSPGHRTNLLWPKSTKVGCAVAKCGDGSS--YYVVCNY 121
>gnl|CDD|240181 cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like extracellular
protein domain, PR-1 like subfamily. The wider family of
SCP containing proteins includes plant
pathogenesis-related protein 1 (PR-1), which accumulates
after infections with pathogens, and may act as an
anti-fungal agent or be involved in cell wall loosening.
It also includes CRISPs, mammalian cysteine-rich
secretory proteins, and allergen 5 from vespid venom. It
has been proposed that SCP domains may function as
endopeptidases.
Length = 136
Score = 58.8 bits (143), Expect = 5e-12
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 6 LSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYR 65
L+A A +ANQ H + +GEN+F+ + + + AV +W +E + Y
Sbjct: 26 LAAYAQRYANQRRGDCALVHS-NGPYGENLFWGSGGNW-----SAADAVASWVSEKKYYD 79
Query: 66 EYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNIL 125
+ G GH+TQVVW TT VG R + V ++ NY PPGN +
Sbjct: 80 YDSN------TCAAGKMCGHYTQVVWRNTTRVGCA--RVTCDNGGGVFIICNYDPPGNYI 131
Query: 126 GR 127
G+
Sbjct: 132 GQ 133
>gnl|CDD|238097 cd00168, SCP, SCP: SCP-like extracellular protein domain, found in
eukaryotes and prokaryotes. This family includes plant
pathogenesis-related protein 1 (PR-1), which accumulates
after infections with pathogens, and may act as an
anti-fungal agent or be involved in cell wall loosening.
This family also includes CRISPs, mammalian
cysteine-rich secretory proteins, which combine SCP with
a C-terminal cysteine rich domain, and allergen 5 from
vespid venom. Roles for CRISP, in response to pathogens,
fertilization, and sperm maturation have been proposed.
One member, Tex31 from the venom duct of Conus textile,
has been shown to possess proteolytic activity sensitive
to serine protease inhibitors. The human GAPR-1 protein
has been reported to dimerize, and such a dimer may form
an active site containing a catalytic triad. SCP has
also been proposed to be a Ca++ chelating serine
protease. The Ca++-chelating function would fit with
various signaling processes that members of this family,
such as the CRISPs, are involved in, and is supported by
sequence and structural evidence of a conserved pocket
containing two histidines and a glutamate. It also may
explain how helothermine, a toxic peptide secreted by
the beaded lizard, blocks Ca++ transporting ryanodine
receptors. Little is known about the biological roles of
the bacterial and archaeal SCP domains.
Length = 122
Score = 57.8 bits (140), Expect = 1e-11
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 24/116 (20%)
Query: 6 LSALALDWANQLLEADKFSHRPDN---KFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIE 62
L+ A ++AN+ + F H ++ GEN+ + AV AWYNEI+
Sbjct: 27 LAKTAQNYANRCI----FKHSGEDGRGFVGENLAAGSYDMTGPA------AVQAWYNEIK 76
Query: 63 DYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANY 118
+Y F + TGH+TQVVW TT++G G++ S+ ++ VV NY
Sbjct: 77 NYN--FGQPGF------SSGTGHYTQVVWKNTTKIGCGVAFCGSNSYY---VVCNY 121
>gnl|CDD|240185 cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-like extracellular
protein domain, glioma pathogenesis-related protein
(GLIPR)-like sub-family. The wider family of SCP
containing proteins includes plant pathogenesis-related
protein 1 (PR-1), CRISPs, mammalian cysteine-rich
secretory proteins, and allergen 5 from vespid venom. It
has been proposed that SCP domains may function as
endopeptidases.
Length = 144
Score = 57.4 bits (139), Expect = 3e-11
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 30/130 (23%)
Query: 5 QLSALALDWANQLLEADKFSHRP--DNKF---------GENIFFYTSSFYVDDKEAIKKA 53
L+ A WA + KF H ++ GENI + S Y + K A
Sbjct: 32 ALAKTARAWAKKC----KFKHNIYLGKRYKCHPKFTSVGENI--WLGSIY---IFSPKNA 82
Query: 54 VTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLS--RNASSDFHK 111
VT+WYNE + Y FD + GH+TQVVW + +VG ++ N +
Sbjct: 83 VTSWYNEGKFYD--FDT------NSCSRVCGHYTQVVWATSYKVGCAVAFCPNLGGIPNA 134
Query: 112 VIVVANYAPP 121
I V NYAP
Sbjct: 135 AIFVCNYAPA 144
>gnl|CDD|240183 cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellular protein
domain, CRISP-like sub-family. The wider family of SCP
containing proteins includes plant pathogenesis-related
protein 1 (PR-1), CRISPs, mammalian cysteine-rich
secretory proteins, which combine SCP with a C-terminal
cysteine rich domain, and allergen 5 from vespid venom.
Involvement of CRISP in response to pathogens,
fertilization, and sperm maturation have been proposed.
One member, Tex31 from the venom duct of Conus textile,
has been shown to possess proteolytic activity sensitive
to serine protease inhibitors. SCP has also been
proposed to be a Ca++ chelating serine protease. The
Ca++-chelating function would fit with various signaling
processes that members of this family, such as the
CRISPs, are involved in, and is supported by sequence
and structural evidence of a conserved pocket containing
two histidines and a glutamate. It also may explain how
helothermine, a toxic peptide secreted by the beaded
lizard, blocks Ca++ transporting ryanodine receptors.
One member, DE or CRISP-1, has been shown to mediate
gamete fusion by binding to the egg surface; a sequence
motif in the SCP domain plays a role in that binding.
Length = 138
Score = 55.8 bits (135), Expect = 8e-11
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 13 WANQ-LLEADKFSHRPDNKF--GENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFD 69
WAN L + R GENIF SS+ + I+ AWY+E +D++
Sbjct: 40 WANTCNLTHSPPNGRTIGGITCGENIFM--SSYPRSWSDVIQ----AWYDEYKDFKYGVG 93
Query: 70 LEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPP 121
PP G GH+TQ+VW + VG ++ +S + K V +Y P
Sbjct: 94 ATPP------GAVVGHYTQIVWYKSYLVGCAVAYCPNSKY-KYFYVCHYCPA 138
>gnl|CDD|240186 cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracellular protein
domain in HrTT-1, a tail-tip epidermis marker in
ascidians. The wider family of SCP containing proteins
includes plant pathogenesis-related protein 1 (PR-1),
CRISPs, mammalian cysteine-rich secretory proteins, and
allergen 5 from vespid venom. It has been proposed that
SCP domains may function as endopeptidases.
Length = 136
Score = 47.9 bits (114), Expect = 8e-08
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 5 QLSALALDWANQLLEADKFSHRPDNKF---GENIFFYTSSFYVDDKEAIKKAVTAWYNEI 61
+L+ALA +A + + + H PD GEN+F T KAV W NE
Sbjct: 30 ELAALAEAYARKCI----WDHNPDRGHLRVGENLFIST-----GPPFDATKAVEDWNNEK 80
Query: 62 EDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSR 103
DY + GH+TQVVW T ++G G
Sbjct: 81 LDY----NYNT--NTCAPNKMCGHYTQVVWANTFKIGCGSYF 116
>gnl|CDD|240179 cd05379, SCP_bacterial, SCP_bacterial: SCP-like extracellular
protein domain, as found in bacteria and archaea. The
wider family of SCP containing proteins includes plant
pathogenesis-related protein 1 (PR-1), CRISPs, mammalian
cysteine-rich secretory proteins, and allergen 5 from
vespid venom. It has been proposed that SCP domains may
function as endopeptidases. Little is known about the
biological roles of the bacterial and archaeal SCP
domains.
Length = 122
Score = 30.1 bits (68), Expect = 0.22
Identities = 24/131 (18%), Positives = 36/131 (27%), Gaps = 49/131 (37%)
Query: 5 QLSALALDWANQLLEADKFSHRPDN----------------KFGENIFFYTSSFYVDDKE 48
L+A A A + FSH + GENI + S+
Sbjct: 25 ALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGYST------- 77
Query: 49 AIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSD 108
+ AV W N GH ++ TEVG+G++
Sbjct: 78 -AEAAVDGWMNS----------------------PGHRANILNPDYTEVGVGVAYGGD-- 112
Query: 109 FHKVIVVANYA 119
V +
Sbjct: 113 -GGYYWVQVFG 122
>gnl|CDD|165443 PHA03172, PHA03172, UL37 tegument protein; Provisional.
Length = 951
Score = 29.7 bits (66), Expect = 0.64
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 101 LSRNASSDFHKVIVVANYAPPGNILGRFKENVPMPAEWK 139
S+ A++D + P G LG ++++ M A WK
Sbjct: 803 FSQRANADDKGAVSFDAAGPDGKELGHWEDDSVMQAIWK 841
>gnl|CDD|224324 COG1406, COG1406, Predicted inhibitor of MCP methylation, homolog
of CheC [Cell motility and secretion].
Length = 153
Score = 27.0 bits (60), Expect = 2.8
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 68 FDLEPPLE---ALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNI 124
F ++ L+ + G ++ + E+G ++ NA++ ++ + PP +
Sbjct: 60 FSIDTALKIASNMMGGMEYNQLDELATSAVGELGNMVTGNAATTLEELGFDFDITPPAVV 119
Query: 125 LGRFKEN--------VPMPAEWKK 140
GR + VP + K
Sbjct: 120 SGRNTKISSKGEILIVPFSSPDGK 143
>gnl|CDD|188648 cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin
endoperoxide synthase and related bacterial proteins.
Animal prostaglandin endoperoxide synthases, including
prostaglandin H2 synthase and a set of similar bacterial
proteins which may function as cyclooxygenases.
Prostaglandin H2 synthase catalyzes the synthesis of
prostaglandin H2 from arachidonic acid. In two reaction
steps, arachidonic acid is converted to Prostaglandin
G2, a peroxide (cyclooxygenase activity) and
subsequently converted to the end product via the
enzyme's peroxidase activity. Prostaglandin H2 synthase
is the target of aspirin and other non-steroid
anti-inflammatory drugs such as ibuprofen, which block
the substrate's access to the active site and may
acetylate a conserved serine residue. In humans and
other mammals, prostaglandin H2 synthase (PGHS), also
called cyclooxygenase (COX) is present as at least two
isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2),
respectively. PGHS-1 is expressed constitutively in most
mammalian cells, while the expression of PGHS-2 is
induced via inflammation response in endothelial cells,
activated macrophages, and others. COX-3 is a splice
variant of COX-1.
Length = 490
Score = 27.6 bits (62), Expect = 2.8
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 46 DKEAIKKAVTAWYNEIEDYREYFDLEPP 73
+ +I++ DYR+ F L P
Sbjct: 361 EVRSIEQGRKLRLASFNDYRKRFGLPPY 388
>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated.
Length = 429
Score = 26.9 bits (60), Expect = 3.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 59 NEIEDYREYFDLEPPLEA 76
N+I +YR +F L PPL
Sbjct: 272 NDIGEYRTFFKLSPPLRT 289
>gnl|CDD|180578 PRK06466, PRK06466, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 27.0 bits (60), Expect = 4.3
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 45 DDKEAIKKAVTAWYNEIEDYREYFDLEP 72
++ K+A+ AW+ +I+++R L P
Sbjct: 338 IGEKPDKEALAAWWKQIDEWRGRHGLFP 365
>gnl|CDD|215194 PLN02340, PLN02340, endoglucanase.
Length = 614
Score = 26.4 bits (58), Expect = 6.4
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 7 SALALDWANQLLE-ADKFSHRPDNKFGENIFFYTSSFYVDD 46
S L L A QL ADKF D+ FYTSS Y D+
Sbjct: 200 SDLLLVHAKQLFSFADKFRGLYDDSIQNAKKFYTSSGYSDE 240
>gnl|CDD|218357 pfam04978, DUF664, Protein of unknown function (DUF664). This
family is commonly found in Streptomyces coelicolor and
is of unknown function. These proteins contain several
conserved histidines at their N-terminus that may form a
metal binding site.
Length = 149
Score = 25.7 bits (57), Expect = 7.4
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 41 SFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQV 89
F + D E + + A+ + E L+A V
Sbjct: 73 DFRLADDETLADLLAAYRRAVARADAAIA-ELDLDATGPVPRWPPGGPV 120
>gnl|CDD|111382 pfam02477, Nairo_nucleo, Nucleocapsid N protein. The nucleoprotein
of the ssRNA negative-strand Nairovirus is an internal
part of the virus particle.
Length = 442
Score = 26.4 bits (58), Expect = 7.8
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 67 YFDLE---PPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGN 123
Y DL+ P E L + + Q +VG +++ S H V VA Y PG
Sbjct: 110 YMDLKKEIPEPEQLVS------YQQAALKWRKDVGFEINQFTRSLTHPV--VAEYKVPGE 161
Query: 124 ILGRFKE 130
+L KE
Sbjct: 162 LLLNMKE 168
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 26.1 bits (58), Expect = 8.8
Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 18/68 (26%)
Query: 31 FGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVV 90
FG ++++ + + W N TGNP VV
Sbjct: 429 FGNP--LLKEGLREEEEKLSRTMMKYWANFA----------------KTGNPNTEGNLVV 470
Query: 91 WNGTTEVG 98
W T
Sbjct: 471 WPAYTSES 478
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,797,759
Number of extensions: 700969
Number of successful extensions: 705
Number of sequences better than 10.0: 1
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 27
Length of query: 147
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 59
Effective length of database: 7,034,450
Effective search space: 415032550
Effective search space used: 415032550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)