RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10686
(147 letters)
>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding
protein, golgi apparatus, myristate; HET: I6P; 1.50A
{Homo sapiens} PDB: 1smb_A*
Length = 154
Score = 117 bits (296), Expect = 7e-35
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 22/136 (16%)
Query: 5 QLSALALDWANQLLEADKFSHRPDN---KFGENIFFYTSSFYVDDKEAIKKAVTAWYNEI 61
L+ A ++ L H P++ + GEN+ + + + WY+EI
Sbjct: 34 NLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTGKE------VADRWYSEI 87
Query: 62 EDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPP 121
++Y + + P + TGHFT +VW T ++G+G + + VVA Y P
Sbjct: 88 KNY----NFQQP----GFTSGTGHFTAMVWKNTKKMGVGKASASD---GSSFVVARYFPA 136
Query: 122 GNILGR--FKENVPMP 135
GN++ F+ENV P
Sbjct: 137 GNVVNEGFFEENVLPP 152
>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense;
NMR {Solanum lycopersicum} SCOP: d.111.1.1
Length = 135
Score = 110 bits (277), Expect = 3e-32
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 18/124 (14%)
Query: 5 QLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDY 64
L++ A ++AN H GEN+ F AV W +E Y
Sbjct: 28 NLASRAQNYANSRAGDCNLIHSG---AGENLAKGGGDFTGRA------AVQLWVSERPSY 78
Query: 65 REYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNI 124
+ G H+TQVVW + +G G +R + + NY P GN
Sbjct: 79 N--YATNQC----VGGKKCRHYTQVVWRNSVRLGCGRARCNNG---WWFISCNYDPVGNW 129
Query: 125 LGRF 128
+G+
Sbjct: 130 IGQR 133
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted,
cross- reactivity; 3.05A {Solenopsis invicta}
Length = 218
Score = 105 bits (263), Expect = 3e-29
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 5 QLSALALDWANQ-LLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIED 63
+L+ +A WANQ E D + G+NI +SS +K + + WYNE++D
Sbjct: 84 ELATIAQRWANQCTFEHDACRNVERFAVGQNIAATSSS--GKNKSTPNEMILLWYNEVKD 141
Query: 64 YREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSR-NASSDFHKVIVVANYAPPG 122
+ + GH+TQ+VW TT++G G ++ K +V NY P G
Sbjct: 142 FD-NRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAG 200
Query: 123 NILGR 127
N+LG
Sbjct: 201 NVLGA 205
>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula
vulgaris} SCOP: d.111.1.1
Length = 209
Score = 104 bits (260), Expect = 6e-29
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
Query: 5 QLSALALDWANQ-LLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIED 63
+L+ +A WANQ D + G+N+ S+ D K V W +E++D
Sbjct: 87 ELAYVAQVWANQCQYGHDTCRDVAKYQVGQNVALTGSTAAKYD--DPVKLVKMWEDEVKD 144
Query: 64 YREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGN 123
Y TGH+TQ+VW T EVG G + +HK +V NY P GN
Sbjct: 145 YNPKKKFSGN-----DFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGN 199
Query: 124 ILGR 127
Sbjct: 200 FKNE 203
>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}
Length = 196
Score = 99.5 bits (248), Expect = 3e-27
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 16/134 (11%)
Query: 5 QLSALALDWANQLLEADKFSHRPDN---KFGENIFFYTSSFYVDDKEAIKKAVTAWYNEI 61
++ A++ A Q F H N GENIF + S D +A ++A AW+ E+
Sbjct: 58 EVEKTAMNNAKQC----VFKHSQPNQRKGLGENIFMSSDSGM-DKAKAAEQASKAWFGEL 112
Query: 62 EDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPP 121
+ L GH+TQ+VW T ++G + ++ VV Y P
Sbjct: 113 AEKG--VGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSN----MCYVVCQYGPA 166
Query: 122 GNILGR--FKENVP 133
GN++G+ +++ P
Sbjct: 167 GNMMGKDIYEKGEP 180
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 97.3 bits (242), Expect = 4e-26
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Query: 5 QLSALALDWANQLLEADKFSHRPDN-KFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIED 63
+ ++ A WAN +H PDN + E I S + + + + W++E ++
Sbjct: 44 EAASNAERWANTC----SLNHSPDNLRVLEGIQCGESIYMSSNARTWTEIIHLWHDEYKN 99
Query: 64 YREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGN 123
+ Y P G+ TGH+TQ+VW T G +S S V Y P GN
Sbjct: 100 FV-YGVGASP-----PGSVTGHYTQIVWYQTYRAGCAVSY-CPSSAWSYFYVCQYCPSGN 152
Query: 124 ILGRF 128
G+
Sbjct: 153 FQGKT 157
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein,
cysteine-rich secretory PROT domain, immune system;
2.20A {Necator americanus}
Length = 424
Score = 100 bits (249), Expect = 7e-26
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 5 QLSALALDWANQLLEADKFSH---RPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEI 61
++ A A+ N+ + H GENI+ TS D +A K+A W+NE+
Sbjct: 279 EVEASAIRHGNKC----VYQHSHGEDRPGLGENIY-KTSVLKFDKNKAAKQASQLWWNEL 333
Query: 62 EDYR-EYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAP 120
++Y ++ GH+TQ+ W+ T ++G + F V Y P
Sbjct: 334 KEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCNDFTF----GVCQYGP 389
Query: 121 PGNILGRF 128
GN +G
Sbjct: 390 GGNYMGHV 397
Score = 95.6 bits (237), Expect = 3e-24
Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 15/136 (11%)
Query: 5 QLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSS-FYVDDKEAIKKAVTAWYNEIED 63
+ D +N ++SS Y D I+ ++ W++ +
Sbjct: 77 AMEQQLQDAIQSC----PSGFAGIQGVAQNTMSWSSSGGYPDPSVKIEPTLSGWWSGAKK 132
Query: 64 YREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGN 123
+ TG F+ +V++ TT++G + K+ V Y G
Sbjct: 133 N--GVGPDNK----YTGGGLFAFSNMVYSETTKLGCAYKVCGT----KLAVSCIYNGVGY 182
Query: 124 ILGRFKENVPMPAEWK 139
I + +
Sbjct: 183 ITNQPMWETGQACQTG 198
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 93.1 bits (231), Expect = 1e-24
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 5 QLSALALDWANQL-LEADKFSHRPDNKF--GENIFFYTSSFYVDDKEAIKKAVTAWYNEI 61
+ A WA++ + R K GENIF + F V AWY+EI
Sbjct: 35 HAAQNAKRWADRCTFAHSPPNTRTVGKLRCGENIFMSSQPFPWSG------VVQAWYDEI 88
Query: 62 EDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPP 121
+++ +PP G+ GH+TQVVW + +G ++ +SS K + V Y P
Sbjct: 89 KNFVYGIGAKPP------GSVIGHYTQVVWYKSHLIGCASAKCSSS---KYLYVCQYCPA 139
Query: 122 GNILGRFKEN 131
GNI G
Sbjct: 140 GNIRGSIATP 149
>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein;
1.85A {Homo sapiens} PDB: 3q2r_A
Length = 205
Score = 91.1 bits (226), Expect = 7e-24
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 33/139 (23%)
Query: 5 QLSALALDWANQLLEADKFSHRPDNK-----------FGENIFFYTSSFYVDDKEAIKKA 53
L+ +A WA+ +FSH K GENI+ + + ++ A
Sbjct: 48 ALAQIAKAWASNC----QFSHNTRLKPPHKLHPNFTSLGENIWTGSVPIF-----SVSSA 98
Query: 54 VTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSR-----NASSD 108
+T WY+EI+DY + GH+TQVVW + +VG + +
Sbjct: 99 ITNWYDEIQDYD--------FKTRICKKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDAL 150
Query: 109 FHKVIVVANYAPPGNILGR 127
+ + NY P GN
Sbjct: 151 SNGAHFICNYGPGGNYPTW 169
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland,
protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB:
3u3n_C* 3u3u_C*
Length = 233
Score = 83.2 bits (205), Expect = 1e-20
Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 5/125 (4%)
Query: 5 QLSALALDWANQ-LLEADKFSHRPDNKF-GENIFFYTSSFYVDDKEAIKKAVTAWYNEIE 62
+L+ LA + E + G+ F Y+ KE I AV + +
Sbjct: 76 ELAGLAKRHTKGCVGETHACRNTERFWLPGQLNFKYSGDKLPRIKELIDDAVKKGHLQKH 135
Query: 63 DYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPG 122
+ ++ + + T VG GL+ + ++ N++
Sbjct: 136 NI--TREIIENYRENGPNGDVKELALAISDRVTAVGCGLTTWEDGAKARALLTCNFS-SQ 192
Query: 123 NILGR 127
N GR
Sbjct: 193 NTRGR 197
>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function;
2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A
Length = 206
Score = 51.6 bits (123), Expect = 6e-09
Identities = 15/130 (11%), Positives = 31/130 (23%), Gaps = 32/130 (24%)
Query: 6 LSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYR 65
L A ++ + ++ + A+K+ + + +
Sbjct: 56 LEEEARKEIKL----PGYADLH----HRGVTRFSGDYEGSAISALKEILETFSADK---- 103
Query: 66 EYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLS--RNASSDFHKVIVVANYAPPGN 123
QVV+ T G RN + ++ V Y
Sbjct: 104 ------------------NSMRQVVYPKATRFGCSGRLRRNKKTGMRRMDWVCVYDKKPK 145
Query: 124 ILGRFKENVP 133
F+ P
Sbjct: 146 DGESFEGGKP 155
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 27.3 bits (60), Expect = 2.0
Identities = 3/36 (8%), Positives = 14/36 (38%)
Query: 37 FYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEP 72
+ S ++ +++ +A + + + Y +
Sbjct: 141 WIYSIGNAKARDFLRREFSARGDVFREEKVYITVPR 176
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 2.2
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 21/51 (41%)
Query: 46 DKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTE 96
+K+A+KK + ++ Y + D P L A+ T E
Sbjct: 18 EKQALKKLQAS----LKLYAD--DSAPAL-AI--------------KATME 47
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A
{Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Length = 318
Score = 26.7 bits (58), Expect = 3.0
Identities = 10/72 (13%), Positives = 21/72 (29%)
Query: 39 TSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVG 98
E +K A+ ++ Y +Y D P + + ++ V
Sbjct: 17 AEIVADKTVEVVKNAIETADGALDLYNKYLDQVIPWQTFDETIKELSRFKQEYSQAASVL 76
Query: 99 LGLSRNASSDFH 110
+G + D
Sbjct: 77 VGDIKTLLMDSQ 88
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2
d.54.1.1 PDB: 1kkr_A*
Length = 413
Score = 26.9 bits (59), Expect = 3.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 40 SSFYVDDKEAIKK 52
SSFY DD++AIK
Sbjct: 13 SSFYFDDQQAIKN 25
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 4.1
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 18 LEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAV-------TAWYNEIED-YREYFD 69
+ A + RP +K + F V + A A+ ++ E+ D Y+ Y
Sbjct: 127 ITARIMAKRPFDKKSNSALFRA----VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY-- 180
Query: 70 LEPPLEAL 77
+ L
Sbjct: 181 -HVLVGDL 187
>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA
repair; 2.00A {Homo sapiens} SCOP: a.4.2.1 c.55.7.1 PDB:
1eh7_A 1eh8_A*
Length = 207
Score = 25.9 bits (57), Expect = 4.8
Identities = 7/45 (15%), Positives = 10/45 (22%), Gaps = 4/45 (8%)
Query: 60 EIEDY----REYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLG 100
+ Y + P QV+W V G
Sbjct: 65 WLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFG 109
>3l00_A SNAP-TAG; protein TAG, protein engineering, benzylguanine,
benzylated transferase; HET: BCS; 1.70A {Homo sapiens}
PDB: 3kzy_A* 3kzz_A* 1yfh_A* 1t39_A* 1qnt_A 1t38_A*
Length = 182
Score = 25.8 bits (57), Expect = 5.3
Identities = 7/45 (15%), Positives = 10/45 (22%), Gaps = 4/45 (8%)
Query: 60 EIEDY----REYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLG 100
+ Y + P QV+W V G
Sbjct: 68 WLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFG 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 6.3
Identities = 23/202 (11%), Positives = 48/202 (23%), Gaps = 58/202 (28%)
Query: 1 MLQFQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFY---------VDDKEAIK 51
MLQ L + +W ++ + R + E S Y V + +A
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 52 K-------AVTAWYNEIEDY-----REYFDLEPPLEALTTGNPTGHFTQVVWNGTTE--- 96
+T + ++ D+ + L+ LT + + +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 97 ------------VGLGLSRNAS----------SDFHKVIVVA-NYAPPGNI------LGR 127
+ + + +I + N P L
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 128 FKENVPMPAE-----WKKKKSQ 144
F + +P W
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKS 402
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide
triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Length = 528
Score = 25.5 bits (55), Expect = 9.8
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 18 LEADKFSHRPDNKFGEN-IFFYTSSFYVDDKEAIKKAVTAW 57
+ ++ S KF E I Y A ++ W
Sbjct: 434 ITKNQVSQLLPEKFAEQLIRVYCKKVDRKSLYAARQYFVQW 474
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,391,923
Number of extensions: 134827
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 27
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)