Query psy10687
Match_columns 622
No_of_seqs 296 out of 1357
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 16:03:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3145|consensus 100.0 1.6E-55 3.5E-60 442.6 0.4 259 100-412 99-359 (372)
2 KOG3145|consensus 100.0 7.4E-52 1.6E-56 416.2 4.3 249 366-617 105-358 (372)
3 TIGR00951 2A43 Lysosomal Cysti 100.0 4.9E-37 1.1E-41 308.3 16.2 211 383-610 2-212 (220)
4 TIGR00951 2A43 Lysosomal Cysti 100.0 1.4E-33 3E-38 283.4 6.5 190 123-360 2-191 (220)
5 KOG2913|consensus 99.9 2.3E-27 5.1E-32 242.3 10.2 246 119-488 3-249 (260)
6 KOG2913|consensus 99.8 6.2E-21 1.3E-25 195.2 12.4 195 380-599 4-235 (260)
7 KOG3211|consensus 99.2 1.5E-10 3.3E-15 113.2 12.6 178 379-587 25-202 (230)
8 PF04193 PQ-loop: PQ loop repe 99.1 5.4E-11 1.2E-15 96.0 5.3 54 124-177 1-54 (61)
9 PF04193 PQ-loop: PQ loop repe 99.1 8.2E-11 1.8E-15 94.9 4.6 55 384-438 1-55 (61)
10 smart00679 CTNS Repeated motif 98.6 1.8E-08 3.8E-13 71.0 2.0 31 138-168 1-31 (32)
11 smart00679 CTNS Repeated motif 98.6 2.9E-08 6.3E-13 69.9 2.0 32 398-429 1-32 (32)
12 KOG3211|consensus 97.5 0.00053 1.2E-08 67.9 9.2 87 120-225 26-112 (230)
13 PHA02246 hypothetical protein 96.7 0.015 3.2E-07 55.4 10.0 156 384-576 4-161 (192)
14 COG4095 Uncharacterized conser 95.8 0.037 7.9E-07 48.1 7.2 54 124-177 4-57 (89)
15 COG4095 Uncharacterized conser 95.7 0.04 8.7E-07 47.8 6.8 51 386-436 6-56 (89)
16 KOG1623|consensus 95.5 0.046 1E-06 56.2 8.0 184 390-599 14-197 (243)
17 PF03083 MtN3_slv: Sugar efflu 95.5 0.0067 1.5E-07 52.2 1.6 69 525-599 4-72 (87)
18 PF03083 MtN3_slv: Sugar efflu 94.8 0.083 1.8E-06 45.4 6.3 81 128-228 6-86 (87)
19 PHA02246 hypothetical protein 92.6 0.28 6.1E-06 46.9 6.0 81 124-226 111-191 (192)
20 PF00810 ER_lumen_recept: ER l 86.6 8.7 0.00019 36.8 11.1 51 522-572 91-141 (147)
21 KOG1623|consensus 82.1 3 6.4E-05 43.2 6.1 53 520-572 5-57 (243)
22 KOG3106|consensus 80.0 11 0.00023 37.7 8.8 65 523-587 115-179 (212)
23 KOG2489|consensus 31.0 42 0.0009 38.2 3.1 26 138-163 482-507 (592)
24 PF00810 ER_lumen_recept: ER l 30.8 95 0.0021 29.7 5.2 46 123-168 91-136 (147)
25 KOG2489|consensus 23.0 1.5E+02 0.0032 34.0 5.6 46 517-562 461-507 (592)
No 1
>KOG3145|consensus
Probab=100.00 E-value=1.6e-55 Score=442.58 Aligned_cols=259 Identities=44% Similarity=0.748 Sum_probs=228.0
Q ss_pred cccccCCCCCceEEEEeecchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhccc
Q psy10687 100 NYKKKSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYY 179 (622)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~~~ 179 (622)
+-+....++.++|++|-+|.+++++++++||+|+++||+|||||+|.||||||++|+|+||+.+|+.|+.+|++||+++|
T Consensus 99 dg~~~~~~d~f~R~~v~~S~~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly 178 (372)
T KOG3145|consen 99 DGSITDLEDAFARMTVIRSIALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLY 178 (372)
T ss_pred cCCccccccceeEEEEeehhhHHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHH
Confidence 33344577889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhccCCCCCCcchhhHHHHHHHHHHHHHhheeEEEeecCCccccc-chhhhhhhhhhhhhceeeeeecccc
Q psy10687 180 SSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSI-GARCLMCAYFLYLSGVLGLVLFNKF 258 (622)
Q Consensus 180 ~~~~i~~~y~~~~~~~~~pvq~~dv~~a~~~~~~~~il~~Q~~~Y~~~~~r~s~-~~~~i~~~~~~~~~~~~~~~~~~~~ 258 (622)
|.+.+++||.-++|.+.+||..||++||+|+++++++++.||+.|+|+.||+++ .+.++....++.++..+..+...++
T Consensus 179 ~~~~iq~~y~~~~p~g~~pv~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~ 258 (372)
T KOG3145|consen 179 YCPKIQNQYDTSYPLGVPPVTLNDVVFSLHAVLMTVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVI 258 (372)
T ss_pred hcHHhccceeccCCCCCCccchhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999999998 4666666555555555555566777
Q ss_pred cccccccccCCceeeecccccCCcCcccccCCCCCCCCcccccccccchhhhhhhHHhhhhhhhhhhcccccccccceeh
Q psy10687 259 QWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIG 338 (622)
Q Consensus 259 ~w~~~l~~~s~ik~~~tliky~PQ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~rkst~G~sI~ 338 (622)
+|+++++.++++|+++|++||+|| ++|||.||||.||+|+
T Consensus 259 ~wL~f~~~~syiKl~mTliKYiPQ----------------------------------------a~mN~tRKSt~gwsIg 298 (372)
T KOG3145|consen 259 RWLAFLNNLSYIKLAMTLIKYIPQ----------------------------------------AYMNFTRKSTVGWSIG 298 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhH----------------------------------------Hhhcceeccccccccc
Confidence 899999999999999999999999 8999999999999999
Q ss_pred hhhhhhcccchhhhHHHHHhhhccCC-CCCCCCccccccchhhhhhhhhhHHHHHHHHHhhcccchhhhhhhccC
Q psy10687 339 NVLLDFTGGMFSILQMVILAINFVGS-NIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKS 412 (622)
Q Consensus 339 ~illd~~gG~lS~~Ql~~~~~~~~~~-~~~~~~~k~~~~~~~~~~~is~~~G~i~~~~w~~S~iPQI~~NykrKS 412 (622)
|++||++||++|++||+.++.|++++ ++-.+++| .+++.++.++-.+ ++-|.+--|+||.
T Consensus 299 nIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~K------fGLg~vSi~Fdii--------Fm~QhyVly~~~~ 359 (372)
T KOG3145|consen 299 NILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGK------FGLGLVSIFFDII--------FMMQHYVLYPRGH 359 (372)
T ss_pred cEEEEecccHHHHHHHHHHHhccccHHHHhcCchh------hhhhhHHHHHHHH--------HHhhheeEecccc
Confidence 99999999999999999999887764 34566666 3555665555444 7778888888764
No 2
>KOG3145|consensus
Probab=100.00 E-value=7.4e-52 Score=416.17 Aligned_cols=249 Identities=44% Similarity=0.766 Sum_probs=228.4
Q ss_pred CCCCCccccccchhhhhhhhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhhhccccchh
Q psy10687 366 IKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQ 445 (622)
Q Consensus 366 ~~~~~~k~~~~~~~~~~~is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~~~~~~~~~ 445 (622)
.+....|+++.++..+.+..+++||+|++.|++|+|||++.||||||++|||+||+.+++.|+..|+++|+..+|.|..+
T Consensus 105 ~~d~f~R~~v~~S~~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq 184 (372)
T KOG3145|consen 105 LEDAFARMTVIRSIALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQ 184 (372)
T ss_pred cccceeEEEEeehhhHHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhc
Confidence 34456788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhCCCCCCccchhHHHHHHHHHHHHHHHhhhhhccCCCCccch-hHHHHHHHHHHHHHhhhhhhccCccchHHHH
Q psy10687 446 DQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSI-GARCLMCAYFLYLSGVLGLVLFNKFQWIDFL 524 (622)
Q Consensus 446 ~~y~~~~~~~l~pvq~~dv~~sl~~~~ld~iil~Q~~~Y~r~~q~~S~-~~~~l~~~~~~~~~i~~~~~~~~~~~~l~vl 524 (622)
+||..++|.+.+||..||+++|+|+++++++++.||+.|+|..|++|+ .+.+++...++++++++.++....+.|++++
T Consensus 185 ~~y~~~~p~g~~pv~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~~wL~f~ 264 (372)
T KOG3145|consen 185 NQYDTSYPLGVPPVTLNDVVFSLHAVLMTVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVIRWLAFL 264 (372)
T ss_pred cceeccCCCCCCccchhhhhhhHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999888988999999999999999999999999999999999999998 4666666667777777777766667799999
Q ss_pred HHHhHHHHHhHhhcchhhhhhhhhcCccccccHHHHHHHHhhhHHHHHHHhhhhcccCCceeEEeecceeeeeccchhhh
Q psy10687 525 NQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIF 604 (622)
Q Consensus 525 ~~l~~ik~~l~~vkyiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~~w~~i~~~g~~~~l~lg~~~~~ 604 (622)
+.++++|..++++||+||+++||+||||+||||++++||++||+++++|+++++.|.++|+.+ +|||+|++||.+++
T Consensus 265 ~~~syiKl~mTliKYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f--~gnp~KfGLg~vSi- 341 (372)
T KOG3145|consen 265 NNLSYIKLAMTLIKYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTF--YGNPGKFGLGLVSI- 341 (372)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHH--hcCchhhhhhhHHH-
Confidence 999999999999999999999999999999999999999999999999999999999999997 79999999996655
Q ss_pred hhhhhh----hhhhhcc
Q psy10687 605 FYSSVF----YCILKKL 617 (622)
Q Consensus 605 ~~d~i~----~~~yr~~ 617 (622)
+||.+| ||+||+.
T Consensus 342 ~FdiiFm~QhyVly~~~ 358 (372)
T KOG3145|consen 342 FFDIIFMMQHYVLYPRG 358 (372)
T ss_pred HHHHHHHhhheeEeccc
Confidence 558885 6777743
No 3
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=100.00 E-value=4.9e-37 Score=308.32 Aligned_cols=211 Identities=38% Similarity=0.609 Sum_probs=178.6
Q ss_pred hhhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhhhccccchhhhhHhhhCCCCCCccch
Q psy10687 383 LASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLN 462 (622)
Q Consensus 383 ~is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~~~~~~~~~~~y~~~~~~~l~pvq~~ 462 (622)
.+|+++||+++++|+++++||++||+||||++|+|++|+.++++|+++|.++|+...++|..+++|..+++ +|+.+
T Consensus 2 ~iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~----~v~~e 77 (220)
T TIGR00951 2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSP----GVTQN 77 (220)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccC----CCcHH
Confidence 46889999999999999999999999999999999999999999999999999999888888888877764 37889
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHhhhhhhccCccchHHHHHHHhHHHHHhHhhcchhh
Q psy10687 463 DVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQ 542 (622)
Q Consensus 463 dv~~sl~~~~ld~iil~Q~~~Y~r~~q~~S~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~vl~~l~~ik~~l~~vkyiPQ 542 (622)
|+++++|+++++++++.|+.+|++++|++|+.+.+.....+....+...........|+++++.++++|..++++||+||
T Consensus 78 dl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiPQ 157 (220)
T TIGR00951 78 DVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQ 157 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999998999988875543322221111111111245789999999999999999999999
Q ss_pred hhhhhhcCccccccHHHHHHHHhhhHHHHHHHhhhhcccCCceeEEeecceeeeeccchhhhhhhhhh
Q psy10687 543 AYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVF 610 (622)
Q Consensus 543 I~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~~w~~i~~~g~~~~l~lg~~~~~~~d~i~ 610 (622)
+++|||||||+|||+.++++|++| .+|+++++.++. ||++|++++ ....+||.++
T Consensus 158 i~~Ny~~ksT~glSi~~i~Ld~~G----~lqri~ts~~~~--------gd~~~l~~~-~~s~~~n~i~ 212 (220)
T TIGR00951 158 AATNYHNKSTGQLSIITVFLDFTG----LLQRIFQSVNET--------GDPLKAGLF-VVSSLFNGLF 212 (220)
T ss_pred HHHHHhcCCCCcCCHHHHHHHHHH----HHHHHHHHHHHc--------CCHHHHHHH-HHHHHHHHHH
Confidence 999999999999999999999999 677777765322 999999999 5555668885
No 4
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=99.98 E-value=1.4e-33 Score=283.38 Aligned_cols=190 Identities=41% Similarity=0.659 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhccccchhhhhhhhhccCCCCCCcchh
Q psy10687 123 LASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLN 202 (622)
Q Consensus 123 ~~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~~~~~~~i~~~y~~~~~~~~~pvq~~ 202 (622)
.+|.++||++++||+++++||+++||||||++|+|++|+.+|++|+.+|.+||+..++++.+++||..+++ +|+.+
T Consensus 2 ~iS~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~----~v~~e 77 (220)
T TIGR00951 2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSP----GVTQN 77 (220)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccC----CCcHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999877763 48999
Q ss_pred hHHHHHHHHHHHHHhheeEEEeecCCcccccchhhhhhhhhhhhhceeeeeecccccccccccccCCceeeecccccCCc
Q psy10687 203 DVFFSIHATIITLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQ 282 (622)
Q Consensus 203 dv~~a~~~~~~~~il~~Q~~~Y~~~~~r~s~~~~~i~~~~~~~~~~~~~~~~~~~~~w~~~l~~~s~ik~~~tliky~PQ 282 (622)
|+++|+|+++++++++.|+.+|++++||+++++.......+................|+++++.++++|+.++++||+||
T Consensus 78 dl~~ai~~~il~~l~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~ikyiPQ 157 (220)
T TIGR00951 78 DVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQ 157 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999998887664432211111000000111345789999999999999999999999
Q ss_pred CcccccCCCCCCCCcccccccccchhhhhhhHHhhhhhhhhhhcccccccccceehhhhhhhcccchhhhHHHHHhhh
Q psy10687 283 DQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAIN 360 (622)
Q Consensus 283 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~rkst~G~sI~~illd~~gG~lS~~Ql~~~~~~ 360 (622)
+++|||||||.|||+.++++|++| .+|++.++.+
T Consensus 158 ----------------------------------------i~~Ny~~ksT~glSi~~i~Ld~~G----~lqri~ts~~ 191 (220)
T TIGR00951 158 ----------------------------------------AATNYHNKSTGQLSIITVFLDFTG----LLQRIFQSVN 191 (220)
T ss_pred ----------------------------------------HHHHHhcCCCCcCCHHHHHHHHHH----HHHHHHHHHH
Confidence 899999999999999999999999 6688888764
No 5
>KOG2913|consensus
Probab=99.94 E-value=2.3e-27 Score=242.34 Aligned_cols=246 Identities=19% Similarity=0.184 Sum_probs=165.6
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhccccchhhhhhhhhccCCCCCC
Q psy10687 119 FRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNP 198 (622)
Q Consensus 119 ~~l~~~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~~~~~~~i~~~y~~~~~~~~~p 198 (622)
..++.+|.++|.++++||+++..||+++|||+||++|+|+.|++.|++|| ++|+.+ +.+ +.++|
T Consensus 3 ~~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligd----i~nl~g---~~l---------~~~~~ 66 (260)
T KOG2913|consen 3 MINDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGD----IFNLVG---FFL---------QPLGS 66 (260)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHcc----HHHHHH---HHh---------cccch
Confidence 46889999999999999999999999999999999999999999999999 888873 444 33444
Q ss_pred cchhhHHHHHHHHHHHHHhheeEEEeecCCc-ccccchhhhhhhhhhhhhceeeeeecccccccccccccCCceeeeccc
Q psy10687 199 VQLNDVFFSIHATIITLLTIFQCLIYERGTQ-KVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLI 277 (622)
Q Consensus 199 vq~~dv~~a~~~~~~~~il~~Q~~~Y~~~~~-r~s~~~~~i~~~~~~~~~~~~~~~~~~~~~w~~~l~~~s~ik~~~tli 277 (622)
+| .+.+.++++.|++++.|++||....+ |.-.+. .... . ...... ..
T Consensus 67 ~~---~~~~~yy~~~d~~l~~q~~yy~~~~~~~pll~~--~s~~---s------~~~~~~------------------~~ 114 (260)
T KOG2913|consen 67 TL---KVQAVYYTLADSVLFVQCLYYGNIYPREPLLPV--PSFR---S------LLGGLE------------------AL 114 (260)
T ss_pred hH---HHHHHHHHHHHHHHHHHHHhcchhcccCccccc--cchh---h------hhcchH------------------HH
Confidence 44 99999999999999999999976554 211000 0000 0 000000 00
Q ss_pred ccCCcCcccccCCCCCCCCcccccccccchhhhhhhHHhhhhhhhhhhcccccccccceehhhhhhhcccchhhhHHHHH
Q psy10687 278 KYIPQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVIL 357 (622)
Q Consensus 278 ky~PQ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~rkst~G~sI~~illd~~gG~lS~~Ql~~~ 357 (622)
++ .....+.++.++-+....-..+..+ +.+..
T Consensus 115 ---~~---------------------------------------~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~-- 146 (260)
T KOG2913|consen 115 ---LI---------------------------------------LSIKLFSPRFVKWPVVALGFLAIVF----LICGA-- 146 (260)
T ss_pred ---HH---------------------------------------HHhhccCcchhhccchhhhhHHHHH----HHHHH--
Confidence 00 0001111111111110000000000 00111
Q ss_pred hhhccCCCCCCCCccccccchhhhhhhhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhh
Q psy10687 358 AINFVGSNIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLG 437 (622)
Q Consensus 358 ~~~~~~~~~~~~~~k~~~~~~~~~~~is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~ 437 (622)
+..... .. .+. .....+..+.++||++.++|..+|+|||++|+||||+||+|+.+|+++..||.+|..+
T Consensus 147 ~~~~~~---~~--~~~---~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s--- 215 (260)
T KOG2913|consen 147 AYESLL---RA--VRV---NGLEIDSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS--- 215 (260)
T ss_pred Hhhccc---cc--ccc---chhhhcchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc---
Confidence 000000 00 000 0034456788999999999999999999999999999999999999999999998765
Q ss_pred hccccchhhhhHhhhCCCCCCccchhHHHHHHHHHHHHHHHhhhhhccCCC
Q psy10687 438 YYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGT 488 (622)
Q Consensus 438 ~~~~~~~~~~y~~~~~~~l~pvq~~dv~~sl~~~~ld~iil~Q~~~Y~r~~ 488 (622)
+|..++.||+ .++..+..+|+.++.|+++|++.+
T Consensus 216 ---------~~~~~n~~w~--------~~~~~~~~~D~~~~~q~~~~~~~~ 249 (260)
T KOG2913|consen 216 ---------SYLVTNLPWL--------VDSKGTIYLDIFIFLQFFNYRASK 249 (260)
T ss_pred ---------cccccCCccc--------ccCCcchhHHHHHHHHHHHhhccc
Confidence 3556677886 488889999999999999988654
No 6
>KOG2913|consensus
Probab=99.84 E-value=6.2e-21 Score=195.24 Aligned_cols=195 Identities=21% Similarity=0.170 Sum_probs=136.2
Q ss_pred hhhhhhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhhhccccchhhhhHhhhCCCCCCc
Q psy10687 380 RLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPV 459 (622)
Q Consensus 380 ~~~~is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~~~~~~~~~~~y~~~~~~~l~pv 459 (622)
.++..+.++|.++++||+++.+||+++|||+||+||+|+.|++.|++|+++..++.... + ..|+
T Consensus 4 ~~~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~---------------~-~~~~ 67 (260)
T KOG2913|consen 4 INDTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQ---------------P-LGST 67 (260)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhc---------------c-cchh
Confidence 35567899999999999999999999999999999999999999999999654433321 1 1223
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccCCCC---------ccchhHH--HHH------------------HH--HHHHHHh
Q psy10687 460 QLNDVFFSIHATIVTLLTIFQCLIYERGTQ---------KVSIGAR--CLM------------------CA--YFLYLSG 508 (622)
Q Consensus 460 q~~dv~~sl~~~~ld~iil~Q~~~Y~r~~q---------~~S~~~~--~l~------------------~~--~~~~~~i 508 (622)
+ .+.+.+.++.|++++.|++||+.... ..+..+- ..+ .+ .+++...
T Consensus 68 ~---~~~~~yy~~~d~~l~~q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 144 (260)
T KOG2913|consen 68 L---KVQAVYYTLADSVLFVQCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLIC 144 (260)
T ss_pred H---HHHHHHHHHHHHHHHHHHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHH
Confidence 2 56688889999999999999975433 1111110 000 00 0001011
Q ss_pred hhhhhc-----cCc-cchHHHHHHHhHHHHHhHhhcchhhhhhhhhcCccccccHHHHHHHHhhhHHHHHHHhhhhcccC
Q psy10687 509 VLGLVL-----FNK-FQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFV 582 (622)
Q Consensus 509 ~~~~~~-----~~~-~~~l~vl~~l~~ik~~l~~vkyiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~ 582 (622)
...... ... ........++|++++.++...|+|||++||+||||+|+|..+|.+...||.+|..| .....
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n~~y~~s----~~~~~ 220 (260)
T KOG2913|consen 145 GAAYESLLRAVRVNGLEIDSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGNTTYILS----SYLVT 220 (260)
T ss_pred HHHhhccccccccchhhhcchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccccccccc----ccccc
Confidence 110000 011 11223667889999999999999999999999999999999999999999999999 22223
Q ss_pred CceeEEeecceeeeecc
Q psy10687 583 GSKLTCLGGVVVKTLLD 599 (622)
Q Consensus 583 ~w~~i~~~g~~~~l~lg 599 (622)
+-+++ .|.-....+|
T Consensus 221 n~~w~--~~~~~~~~~D 235 (260)
T KOG2913|consen 221 NLPWL--VDSKGTIYLD 235 (260)
T ss_pred CCccc--ccCCcchhHH
Confidence 33333 2566666666
No 7
>KOG3211|consensus
Probab=99.20 E-value=1.5e-10 Score=113.16 Aligned_cols=178 Identities=19% Similarity=0.183 Sum_probs=120.8
Q ss_pred hhhhhhhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhhhccccchhhhhHhhhCCCCCC
Q psy10687 379 FRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNP 458 (622)
Q Consensus 379 ~~~~~is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~~~~~~~~~~~y~~~~~~~l~p 458 (622)
.....++..+||........-++|||.|.-.+||++|+|.--++++++|++-...|+... +.++
T Consensus 25 cl~~llsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~----------------g~pF 88 (230)
T KOG3211|consen 25 CLKALLSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTS----------------GYPF 88 (230)
T ss_pred chHHHHHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhc----------------CCCc
Confidence 567789999999999999999999999999999999999999999999988433333211 2222
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHhhhhhhccCccchHHHHHHHhHHHHHhHhhc
Q psy10687 459 VQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIK 538 (622)
Q Consensus 459 vq~~dv~~sl~~~~ld~iil~Q~~~Y~r~~q~~S~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~vl~~l~~ik~~l~~vk 538 (622)
-.+. -...-++.+.+++.+.++|+- |...... + .+.. +.+...++. ......++.........+.+++
T Consensus 89 ss~g---E~~fLl~Q~vili~~if~f~~--~~~~~v~--~-l~~~--~~v~~~~~s--k~~p~~~~~L~~~~~l~i~v~s 156 (230)
T KOG3211|consen 89 SSYG---EYPFLLLQAVILILCIFHFSG--QTVTVVQ--F-LGYI--ALVVSVLAS--KALPLWIITLAQNLCLPIVVVS 156 (230)
T ss_pred hhHH---HHHHHHHHHHHHHHHHHHhcc--ceeehhh--H-HHHH--HHHHHHHHH--hhhhHHHHHHHHhcCchhhhHH
Confidence 1111 122335678888888888882 2211100 0 1111 111111111 1122334444455556788899
Q ss_pred chhhhhhhhhcCccccccHHHHHHHHhhhHHHHHHHhhhhcccCCceeE
Q psy10687 539 YIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLT 587 (622)
Q Consensus 539 yiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~~w~~i 587 (622)
|+||+..|||.|+|+.+|....+|.+.|..+++..-.- +.+|...+
T Consensus 157 r~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq---~t~d~~ml 202 (230)
T KOG3211|consen 157 RLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQ---ETGDFLML 202 (230)
T ss_pred HHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHH---hcCChhhH
Confidence 99999999999999999999999999999999876553 34555543
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=99.14 E-value=5.4e-11 Score=95.98 Aligned_cols=54 Identities=48% Similarity=0.731 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhc
Q psy10687 124 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLG 177 (622)
Q Consensus 124 ~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~ 177 (622)
++.++|+++.++|.++++||+++|||+||++|+|+.++.+|++|+.+..++.+.
T Consensus 1 i~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~ 54 (61)
T PF04193_consen 1 ISNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSIL 54 (61)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999888777665
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=99.10 E-value=8.2e-11 Score=94.90 Aligned_cols=55 Identities=47% Similarity=0.707 Sum_probs=50.8
Q ss_pred hhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhhh
Q psy10687 384 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGY 438 (622)
Q Consensus 384 is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~~ 438 (622)
++.++||++.++|.++++||+++|||+||++|+|+.+++++++|+++..++.+..
T Consensus 1 i~~~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~ 55 (61)
T PF04193_consen 1 ISNILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILS 55 (61)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999999999988876643
No 10
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=98.61 E-value=1.8e-08 Score=71.02 Aligned_cols=31 Identities=42% Similarity=0.664 Sum_probs=29.7
Q ss_pred hhhhhhHHHHHhcCCcccccchhhHHHHhhh
Q psy10687 138 ISFYPQLYTNYKKKSVIGLNFDFLGLNLIGF 168 (622)
Q Consensus 138 vs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~ 168 (622)
++++||+++|||+||++|+|+.|+++|+.|+
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~ 31 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGD 31 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHHHhcC
Confidence 4789999999999999999999999999997
No 11
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=98.56 E-value=2.9e-08 Score=69.91 Aligned_cols=32 Identities=41% Similarity=0.637 Sum_probs=29.9
Q ss_pred hcccchhhhhhhccCccCcchhHHHHHHhhhh
Q psy10687 398 ISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFT 429 (622)
Q Consensus 398 ~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~ 429 (622)
++++||+++|||+||++|+|+.|+++++.|++
T Consensus 1 ~~~~PQi~~~~~~ks~~glS~~~~~l~~~G~~ 32 (32)
T smart00679 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32 (32)
T ss_pred CcchhHHHHHHHcCCcCcCCHHHHHHHHhcCC
Confidence 47899999999999999999999999999974
No 12
>KOG3211|consensus
Probab=97.48 E-value=0.00053 Score=67.92 Aligned_cols=87 Identities=20% Similarity=0.233 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhccccchhhhhhhhhccCCCCCCc
Q psy10687 120 RLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPV 199 (622)
Q Consensus 120 ~l~~~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~~~~~~~i~~~y~~~~~~~~~pv 199 (622)
+...+|..+||.-+..-.....|||.+--..||++|+|.-=+.+-++|+..-..|+.. .+.++-
T Consensus 26 l~~llsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~----------------~g~pFs 89 (230)
T KOG3211|consen 26 LKALLSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYT----------------SGYPFS 89 (230)
T ss_pred hHHHHHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhh----------------cCCCch
Confidence 6889999999999999999999999999999999999999999999999544444432 223333
Q ss_pred chhhHHHHHHHHHHHHHhheeEEEee
Q psy10687 200 QLNDVFFSIHATIITLLTIFQCLIYE 225 (622)
Q Consensus 200 q~~dv~~a~~~~~~~~il~~Q~~~Y~ 225 (622)
.+-+..| -.+-+++++.+.++|+
T Consensus 90 s~gE~~f---Ll~Q~vili~~if~f~ 112 (230)
T KOG3211|consen 90 SYGEYPF---LLLQAVILILCIFHFS 112 (230)
T ss_pred hHHHHHH---HHHHHHHHHHHHHHhc
Confidence 3222222 2345667777766665
No 13
>PHA02246 hypothetical protein
Probab=96.65 E-value=0.015 Score=55.39 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=86.2
Q ss_pred hhhhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHH--HhhhhhhhhhhhhhccccchhhhhHhhhCCCCCCccc
Q psy10687 384 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLN--LIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQL 461 (622)
Q Consensus 384 is~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~--~~G~~~y~is~l~~~~~~~~~~~y~~~~~~~l~pvq~ 461 (622)
++-.+...|+.+-....+||.-.-.|.|+++|.|-.|..+- ..|-.+ +|+..- ....|.
T Consensus 4 ~~~~~s~~yailit~gYipgL~slvk~~nv~GvS~~FWYLi~~tvgiSf---yNlL~T-----------~~~~fq----- 64 (192)
T PHA02246 4 LSHYLSILYAILITVGYIPGLVALVKAESVKGVSNYFWYLIVATVGISF---YNLLLT-----------DASVFQ----- 64 (192)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhcccccHHHHHHHHHHHHHHHHH---HHHHhc-----------CCceEE-----
Confidence 34556677888888899999999999999999998765544 344443 444321 011121
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHhhhhhhccCccchHHHHHHHhHHHHHhHhhcchh
Q psy10687 462 NDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIP 541 (622)
Q Consensus 462 ~dv~~sl~~~~ld~iil~Q~~~Y~r~~q~~S~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~vl~~l~~ik~~l~~vkyiP 541 (622)
+.|.+.-+.--++..-...||++.-- +.+...++ .+..+.+ . +..++-...+. ..-+.+|+|
T Consensus 65 ---i~svg~nl~lgivcLlv~~~rkkd~f-~~~fiiif------SLllfll-~----~~~evtQtVat---~tIiLaYi~ 126 (192)
T PHA02246 65 ---IVSVGLNLTLGIVCLLVASYRKKDYF-SIPFIIVF------SLLLFLL-S----DFTALTQTVAT---ITIILAYVT 126 (192)
T ss_pred ---Eeeeehhhhhhhhheeeehhhccccc-cchHHHHH------HHHHHHH-h----hhHHHHHHHHH---HHHHHHHHH
Confidence 11211111111111222346654321 11111111 1111111 1 12223333343 344678999
Q ss_pred hhhhhhhcCccccccHHHHHHHHhhhHHHHHHHhh
Q psy10687 542 QAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVI 576 (622)
Q Consensus 542 QI~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l 576 (622)
||..=||.|+.||.+..+.++-..|=.+-..++++
T Consensus 127 QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~L 161 (192)
T PHA02246 127 QITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMVL 161 (192)
T ss_pred HHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999888766665555555554
No 14
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.037 Score=48.06 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhc
Q psy10687 124 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLG 177 (622)
Q Consensus 124 ~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~ 177 (622)
.-.+.||+....=.++++||.++-+|.|++.++|+.++..-.+|.++..+|-..
T Consensus 4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygIL 57 (89)
T COG4095 4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGIL 57 (89)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999998777777554
No 15
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.04 Score=47.83 Aligned_cols=51 Identities=25% Similarity=0.372 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhh
Q psy10687 386 DIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNL 436 (622)
Q Consensus 386 ~~~G~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l 436 (622)
.+.||+....=.++++||.+|-+|.|++.++|+.++..-..|-.+..+|-.
T Consensus 6 ~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygI 56 (89)
T COG4095 6 EVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGI 56 (89)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH
Confidence 467899888899999999999999999999999999998888887665543
No 16
>KOG1623|consensus
Probab=95.51 E-value=0.046 Score=56.21 Aligned_cols=184 Identities=15% Similarity=0.073 Sum_probs=90.5
Q ss_pred HHHHHHHhhcccchhhhhhhccCccCcchhHHHHHHhhhhhhhhhhhhhccccchhhhhHhhhCCCCCCccchhHHHHHH
Q psy10687 390 WIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIH 469 (622)
Q Consensus 390 ~i~~~~w~~S~iPQI~~NykrKS~eGLS~~f~ll~~~G~~~y~is~l~~~~~~~~~~~y~~~~~~~l~pvq~~dv~~sl~ 469 (622)
-+..++-..+-+|=.++.+||||+||.|..-+++.+++.....-|-+. -.+ +++.- . +-+ .
T Consensus 14 ~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~-----~~~-d~lli------t------IN~-~ 74 (243)
T KOG1623|consen 14 NIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLL-----KVH-DYLLI------T------ING-I 74 (243)
T ss_pred HHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhh-----ccC-ceEEE------E------Eeh-h
Confidence 334445557888999999999999999999999999988865433211 010 11111 1 111 2
Q ss_pred HHHHHHHHHhhhhhccCCCCccchhHHHHHHHHHHHHHhhhhhhccCccchHHHHHHHhHHHHHhHhhcchhhhhhhhhc
Q psy10687 470 ATIVTLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQR 549 (622)
Q Consensus 470 ~~~ld~iil~Q~~~Y~r~~q~~S~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~vl~~l~~ik~~l~~vkyiPQI~~Nyrr 549 (622)
++++.++-+.=|++|.++++....... +..+..++..+.+....+....-.+.++.+...-.++...+-+--+-+--|+
T Consensus 75 G~~ie~~Yi~~f~~ya~~k~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIkt 153 (243)
T KOG1623|consen 75 GLVIETVYISIFLYYAPKKKTVKIVLA-LVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKT 153 (243)
T ss_pred cHHHHHHHHHHHheecCchheeEeeeh-HHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheec
Confidence 334556666667888766542222111 1111111111111111211111112222222222233334444445567788
Q ss_pred CccccccHHHHHHHHhhhHHHHHHHhhhhcccCCceeEEeecceeeeecc
Q psy10687 550 KSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLD 599 (622)
Q Consensus 550 KSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~~w~~i~~~g~~~~l~lg 599 (622)
||||.++...-+. +.+...|-.+.+.--+|.-.. --|...+.+|
T Consensus 154 kSvE~mPf~Ls~a----~fl~a~~W~lYGlli~D~~Ia--ipN~iG~~l~ 197 (243)
T KOG1623|consen 154 KSVEYMPFPLSFA----LFLVAVQWLLYGLLIKDFFIA--IPNVLGFLLG 197 (243)
T ss_pred CceeeechHHHHH----HHHHHHHHHHHHHHhcCeEEE--cccHHHHHHH
Confidence 9999999888442 233334444444333443332 1344334444
No 17
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=95.47 E-value=0.0067 Score=52.24 Aligned_cols=69 Identities=19% Similarity=0.134 Sum_probs=50.8
Q ss_pred HHHhHHHHHhHhhcchhhhhhhhhcCccccccHHHHHHHHhhhHHHHHHHhhhhcccCCceeEEeecceeeeecc
Q psy10687 525 NQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLD 599 (622)
Q Consensus 525 ~~l~~ik~~l~~vkyiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~~w~~i~~~g~~~~l~lg 599 (622)
++++.+..++...+-+||+++.+|+||++++|+..+++.+.++.+=+.= +.-.+||..+ ..|..-+.++
T Consensus 4 g~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~Y----G~l~~d~~i~--~~N~~g~~~~ 72 (87)
T PF03083_consen 4 GILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIY----GILINDWPII--VPNVFGLVLS 72 (87)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhh----hhhcCCeeEE--eeHHHHHHHH
Confidence 3455556677778889999999999999999999999888887765542 2223588555 4666656665
No 18
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=94.75 E-value=0.083 Score=45.42 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhccccchhhhhhhhhccCCCCCCcchhhHHHH
Q psy10687 128 IGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFS 207 (622)
Q Consensus 128 lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~~~~~~~i~~~y~~~~~~~~~pvq~~dv~~a 207 (622)
+|-+..++=..+..||+++.+|+||++++|+...+..+++..+-..|-+. . +..++ +...
T Consensus 6 ~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l------~----------~d~~i----~~~N 65 (87)
T PF03083_consen 6 LASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGIL------I----------NDWPI----IVPN 65 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhh------c----------CCeeE----EeeH
Confidence 34455556677889999999999999999999998888877555444433 1 12232 3344
Q ss_pred HHHHHHHHHhheeEEEeecCC
Q psy10687 208 IHATIITLLTIFQCLIYERGT 228 (622)
Q Consensus 208 ~~~~~~~~il~~Q~~~Y~~~~ 228 (622)
.-++++..+.+.-++.|.+++
T Consensus 66 ~~g~~~~~~~~~~~~~y~~~~ 86 (87)
T PF03083_consen 66 VFGLVLSIIYLVVYYIYPSKK 86 (87)
T ss_pred HHHHHHHHHHHhheEEeCCCC
Confidence 568888888888888887654
No 19
>PHA02246 hypothetical protein
Probab=92.56 E-value=0.28 Score=46.95 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhhhhhHhhhhccccchhhhhhhhhccCCCCCCcchhh
Q psy10687 124 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPVQLND 203 (622)
Q Consensus 124 ~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~~~y~~~n~~~~~~~~i~~~y~~~~~~~~~pvq~~d 203 (622)
+++..|.+++ ..+..||+++=||.|+.||.++.+.++--+|-.|. ++|..+ ++.++ +-
T Consensus 111 vtQtVat~tI---iLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L-~~~m~L---------------thv~~---hI 168 (192)
T PHA02246 111 LTQTVATITI---ILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASL-IVSMVL---------------THTYV---HI 168 (192)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHH-HHHHhh---------------hCCcc---ee
Confidence 4455555444 46889999999999999999999999988887665 344442 23233 11
Q ss_pred HHHHHHHHHHHHHhheeEEEeec
Q psy10687 204 VFFSIHATIITLLTIFQCLIYER 226 (622)
Q Consensus 204 v~~a~~~~~~~~il~~Q~~~Y~~ 226 (622)
++.-.-..++-++...|-=+|+|
T Consensus 169 iiTEf~N~iLiLiCy~qA~~Ysk 191 (192)
T PHA02246 169 IATEFVNFVLILICYLQANYYSR 191 (192)
T ss_pred eHHHHHHHHHHHHHHHHHhhhcC
Confidence 34444555666666667666765
No 20
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=86.64 E-value=8.7 Score=36.80 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=41.7
Q ss_pred HHHHHHhHHHHHhHhhcchhhhhhhhhcCccccccHHHHHHHHhhhHHHHH
Q psy10687 522 DFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSIL 572 (622)
Q Consensus 522 ~vl~~l~~ik~~l~~vkyiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sll 572 (622)
.+.++++..+..+..++-+||.++-.|++.+|.+.-..++.-...=+++++
T Consensus 91 ~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR~ly~~ 141 (147)
T PF00810_consen 91 FFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYRALYLL 141 (147)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHHHHHHH
Confidence 455666677779999999999999999999999998888877666666554
No 21
>KOG1623|consensus
Probab=82.12 E-value=3 Score=43.20 Aligned_cols=53 Identities=11% Similarity=0.099 Sum_probs=42.3
Q ss_pred hHHHHHHHhHHHHHhHhhcchhhhhhhhhcCccccccHHHHHHHHhhhHHHHH
Q psy10687 520 WIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSIL 572 (622)
Q Consensus 520 ~l~vl~~l~~ik~~l~~vkyiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sll 572 (622)
+..+++..+.+-....+.+=+|-.++.+|||||||.|..-+.+.+.++.+.+-
T Consensus 5 ~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~ 57 (243)
T KOG1623|consen 5 LLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLY 57 (243)
T ss_pred HHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHH
Confidence 34455666666667777888899999999999999999999998888776543
No 22
>KOG3106|consensus
Probab=80.03 E-value=11 Score=37.75 Aligned_cols=65 Identities=8% Similarity=-0.060 Sum_probs=45.9
Q ss_pred HHHHHhHHHHHhHhhcchhhhhhhhhcCccccccHHHHHHHHhhhHHHHHHHhhhhcccCCceeE
Q psy10687 523 FLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFVGSKLT 587 (622)
Q Consensus 523 vl~~l~~ik~~l~~vkyiPQI~~NyrrKSt~GlSi~~~~Ld~~G~i~sllsl~l~~~~~~~w~~i 587 (622)
+..+++..+.-+..++-+||..+-=|.+.+|-+--.-++.--+--.+|+.-=+.+-....-|..+
T Consensus 115 ~~eilWtFsiyLEsVaILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~WI~r~~~e~~~~~i 179 (212)
T KOG3106|consen 115 ILEILWTFSIYLESVAILPQLFMLQKTGEAETITAHYLFALGLYRALYIANWIYRYVTEDFWDPI 179 (212)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence 34455566678999999999999999999999887777765555555655555554444445544
No 23
>KOG2489|consensus
Probab=31.04 E-value=42 Score=38.21 Aligned_cols=26 Identities=42% Similarity=0.589 Sum_probs=21.2
Q ss_pred hhhhhhHHHHHhcCCcccccchhhHH
Q psy10687 138 ISFYPQLYTNYKKKSVIGLNFDFLGL 163 (622)
Q Consensus 138 vs~~PQi~~N~rrKS~~GlS~dFl~l 163 (622)
+-+.||+..|||.||+..|---.+..
T Consensus 482 i~M~PQLFINYKLKSVAHLPWR~~tY 507 (592)
T KOG2489|consen 482 IFMLPQLFINYKLKSVAHLPWRAFTY 507 (592)
T ss_pred HHhChHHHhhhhhhhhhcCcHHHHHH
Confidence 45789999999999999987655543
No 24
>PF00810 ER_lumen_recept: ER lumen protein retaining receptor; InterPro: IPR000133 Proteins resident in the lumen of the endoplasmic reticulum (ER) contain a C-terminal tetrapeptide, commonly known as Lys-Asp-Glu-Leu (KDEL) in mammals and His-Asp-Glu-Leu (HDEL) in yeast (Saccharomyces cerevisiae) that acts as a signal for their retrieval from subsequent compartments of the secretory pathway. The receptor for this signal is a ~26 kDa Golgi membrane protein, initially identified as the ERD2 gene product in S. cerevisiae. The receptor molecule, known variously as the ER lumen protein retaining receptor or the 'KDEL receptor', is believed to cycle between the cis side of the Golgi apparatus and the ER. It has also been characterised in a number of other species, including plants, Plasmodium, Drosophila and mammals. In mammals, 2 highly related forms of the receptor are known. The KDEL receptor is a highly hydrophobic protein of 220 residues; its sequence exhibits 7 hydrophobic regions, all of which have been suggested to traverse the membrane []. More recently, however, it has been suggested that only 6 of these regions are transmembrane (TM), resulting in both N- and C-termini on the cytoplasmic side of the membrane.; GO: 0046923 ER retention sequence binding, 0006621 protein retention in ER lumen, 0016021 integral to membrane
Probab=30.76 E-value=95 Score=29.75 Aligned_cols=46 Identities=15% Similarity=0.056 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhcCCcccccchhhHHHHhhh
Q psy10687 123 LASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGF 168 (622)
Q Consensus 123 ~~S~~lG~i~~~~Wsvs~~PQi~~N~rrKS~~GlS~dFl~l~~~G~ 168 (622)
...+++=..+....+++.+||+++-.|++.+|.+..-|++.=-+.=
T Consensus 91 ~~~ei~wtfSi~LEsvAIlPQL~m~~k~~~ve~ltshYv~~Lg~yR 136 (147)
T PF00810_consen 91 FFLEILWTFSIYLESVAILPQLFMLQKTGEVENLTSHYVFALGLYR 136 (147)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhcCeeehHHHHHHHHHHHH
Confidence 4445555577788889999999999999999999988887654444
No 25
>KOG2489|consensus
Probab=23.03 E-value=1.5e+02 Score=33.99 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=32.2
Q ss_pred ccchHH-HHHHHhHHHHHhHhhcchhhhhhhhhcCccccccHHHHHH
Q psy10687 517 KFQWID-FLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLL 562 (622)
Q Consensus 517 ~~~~l~-vl~~l~~ik~~l~~vkyiPQI~~NyrrKSt~GlSi~~~~L 562 (622)
+.+|-. +++.+-..-..+-++--.||...|||-||+..+.-.++.-
T Consensus 461 hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKLKSVAHLPWR~~tY 507 (592)
T KOG2489|consen 461 HKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKLKSVAHLPWRAFTY 507 (592)
T ss_pred cccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhhhhhhcCcHHHHHH
Confidence 345543 4444433334555677789999999999999999887753
Done!