Query psy10687
Match_columns 622
No_of_seqs 296 out of 1357
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 16:03:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljb_A M2 protein, BM2 protein 11.5 2.1E+02 0.0071 19.8 3.0 24 117-140 5-28 (35)
2 3bkd_A Transmembrane domain of 8.0 3.7E+02 0.013 17.3 3.0 21 118-138 2-22 (26)
3 2kih_A Matrix protein 2; S31N, 7.0 5E+02 0.017 18.5 3.6 33 117-149 5-39 (43)
4 2vo8_A EXO-alpha-sialidase; hy 4.4 8E+02 0.027 22.2 4.3 33 65-97 19-54 (143)
5 3g9r_A Fusion complex of HIV-1 4.1 4.7E+02 0.016 18.7 2.0 20 518-537 9-28 (42)
6 2ys4_A Hydrocephalus-inducing 3.3 1.2E+03 0.042 19.4 4.6 56 32-102 41-97 (122)
7 4hci_A Cupredoxin 1; structura 2.8 6.3E+02 0.022 20.3 2.0 21 58-78 24-44 (100)
8 3lbw_A M2 protein; proton chan 2.5 1.3E+03 0.043 14.5 2.8 19 120-138 1-19 (23)
9 3jqo_A TRAF protein; helical o 2.4 5.7E+02 0.02 25.0 1.4 21 61-81 197-217 (227)
10 1wh0_A Ubiquitin carboxyl-term 2.3 2.7E+03 0.091 18.0 5.9 34 86-119 78-111 (134)
No 1
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=11.48 E-value=2.1e+02 Score=19.85 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=20.3
Q ss_pred ecchhhHHHHHHHHHHHHHHHhhh
Q psy10687 117 KDFRLGLASDIIGWIYFSAWTISF 140 (622)
Q Consensus 117 ~~~~l~~~S~~lG~i~~~~Wsvs~ 140 (622)
-|.++.+.++++|.+=+.+|.+--
T Consensus 5 SsDplviaA~IigiLHlilWildr 28 (35)
T 2ljb_A 5 SSDPLVVAASIIGILHFIAWTIGH 28 (35)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhh
Confidence 356899999999999999998753
No 2
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=7.98 E-value=3.7e+02 Score=17.35 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.6
Q ss_pred cchhhHHHHHHHHHHHHHHHh
Q psy10687 118 DFRLGLASDIIGWIYFSAWTI 138 (622)
Q Consensus 118 ~~~l~~~S~~lG~i~~~~Wsv 138 (622)
|.++.+..+++|.+-...|..
T Consensus 2 sDplv~aa~iiGilHLiLwIl 22 (26)
T 3bkd_A 2 SDPLVVAASIMGILHLILWIL 22 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHH
Confidence 568899999999999999975
No 3
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=6.95 E-value=5e+02 Score=18.55 Aligned_cols=33 Identities=24% Similarity=0.560 Sum_probs=24.7
Q ss_pred ecchhhHHHHHHHHHHHHHHHh--hhhhhHHHHHh
Q psy10687 117 KDFRLGLASDIIGWIYFSAWTI--SFYPQLYTNYK 149 (622)
Q Consensus 117 ~~~~l~~~S~~lG~i~~~~Wsv--s~~PQi~~N~r 149 (622)
.|.++.+..+++|.+-+..|.+ .|+--+|..+|
T Consensus 5 ssdplv~aa~iiGIlHLiLwildRlffkciyrrfk 39 (43)
T 2kih_A 5 SSDPLVVAANIIGILHLILWILDRLFFKSIYRFFE 39 (43)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999999987 45555554444
No 4
>2vo8_A EXO-alpha-sialidase; hydrolase, cohesin, high affinity, glycoside hydrolase; 1.7A {Clostridium perfringens} SCOP: b.2.2.2
Probab=4.37 E-value=8e+02 Score=22.20 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=25.4
Q ss_pred eecccCCceeeeeecccc---ceeeeeeEeeeccce
Q psy10687 65 HVAVEKDFRLGLASDIIG---WIYFSAWTISFYPQL 97 (622)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 97 (622)
+|+.++++++.+.-|-+. -+|-.+||++..|..
T Consensus 19 sV~vG~~Fdv~~Gl~~v~e~~~vYAqd~TlnYd~a~ 54 (143)
T 2vo8_A 19 EVQVGSAFEAILGIEGLNGDTEVYSAEYLFEYNAEA 54 (143)
T ss_dssp EEETTCCEEEEEEEESCCTTCCEEEEEEEEECCTTT
T ss_pred eeccCccEEEEechhHhhhhhhhhhhhheeccChhh
Confidence 466678999999888776 578899999955543
No 5
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=4.14 E-value=4.7e+02 Score=18.69 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=16.0
Q ss_pred cchHHHHHHHhHHHHHhHhh
Q psy10687 518 FQWIDFLNQCSDVKLTITLI 537 (622)
Q Consensus 518 ~~~l~vl~~l~~ik~~l~~v 537 (622)
++|.++-.+++|++.++...
T Consensus 9 WnWFdItkWlwyIKI~iMv~ 28 (42)
T 3g9r_A 9 WNWFNITNWLWYIKIEELKS 28 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 57888889999999877654
No 6
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=3.25 E-value=1.2e+03 Score=19.35 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=29.8
Q ss_pred ccceeeeeeee-eeeEEEEEeeeeeeeeecCCceeecccCCceeeeeeccccceeeeeeEeeeccceecccc
Q psy10687 32 DRTKLGLGLFS-VSFDILFMIQHYVLYSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYK 102 (622)
Q Consensus 32 ~~~~~~l~~~~-~~~~~~~~~qh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (622)
+..+..+-+-+ ...+..|..+-..-.+++|++-++.+++..++-| .+.|.....+.
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~~~F~i~P~~g~L~pg~~~~i~V---------------~F~P~~~g~~~ 97 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTCRPFSIEPAIGTLNVGESMQLEV---------------EFEPQSVGDHS 97 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECCTTEEEESSEEEECTTCEEEEEE---------------EECCSSSBCCC
T ss_pred CeEEEEEEEEECCCCCEEEEEecCCCeEEECCcCEECCCCEEEEEE---------------EEEcCCCccEE
Confidence 44444444444 2234444444445566777766666554444444 47777665554
No 7
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=2.78 E-value=6.3e+02 Score=20.29 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=17.2
Q ss_pred eecCCceeecccCCceeeeee
Q psy10687 58 SIKPSDIHVAVEKDFRLGLAS 78 (622)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~ 78 (622)
.-+|+.|+|.+++.+++.++.
T Consensus 24 ~F~P~~i~v~~G~tV~~~~~n 44 (100)
T 4hci_A 24 YFNPNVITIPINESTTLLLKN 44 (100)
T ss_dssp EEESSEEEECTTSCEEEEEEE
T ss_pred EEeCCEEEECCCCEEEEEEEc
Confidence 457999999999888888764
No 8
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=2.53 E-value=1.3e+03 Score=14.52 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q psy10687 120 RLGLASDIIGWIYFSAWTI 138 (622)
Q Consensus 120 ~l~~~S~~lG~i~~~~Wsv 138 (622)
++.+..+++|..-...|..
T Consensus 1 plv~aa~iigIlHLiLwIl 19 (23)
T 3lbw_A 1 PLVVAASIIAILHLILWIL 19 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CeehhHHHHHHHHHHHHHH
Confidence 3567889999999999975
No 9
>3jqo_A TRAF protein; helical outer membrane TM, outer membrane protein complex, plasmid, transport protein; HET: LDA; 2.60A {Escherichia coli}
Probab=2.40 E-value=5.7e+02 Score=24.97 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=18.7
Q ss_pred CCceeecccCCceeeeeeccc
Q psy10687 61 PSDIHVAVEKDFRLGLASDII 81 (622)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~ 81 (622)
||+|+++.+..++++++-|+.
T Consensus 197 ~PTl~i~~G~~v~I~V~rDld 217 (227)
T 3jqo_A 197 PPTLYDQQGDAVSIFVARDLD 217 (227)
T ss_dssp CCEEEECTTCEEEEECCSCEE
T ss_pred CCeEEECCCCEEEEEEecccc
Confidence 789999999999999998863
No 10
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=2.34 E-value=2.7e+03 Score=17.98 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=20.4
Q ss_pred eeeeEeeeccceeccccccCCCCCceEEEEeecc
Q psy10687 86 FSAWTISFYPQLYTNYKKKSIKPSDIHVAVEKDF 119 (622)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (622)
...|.+.++......-.+-.+.+..+.++..+.+
T Consensus 78 ~y~~~~~L~~~I~pe~S~~~v~~~kIeI~L~K~e 111 (134)
T 1wh0_A 78 TFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQ 111 (134)
T ss_dssp CEEEEEEBSSCEEEEEEEEEECSSEEEEEEEESS
T ss_pred eEEEeccccccCCchhCEEEEeCCEEEEEEEECC
Confidence 5567777777766544344455666767666643
Done!