Query psy10687
Match_columns 622
No_of_seqs 296 out of 1357
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 16:03:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10687.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10687hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 4.3 2.5E+02 0.018 16.5 2.2 14 127-140 3-19 (27)
2 d1txka1 b.1.18.2 (A:397-511) G 3.6 1.4E+02 0.01 24.0 0.7 13 2-14 31-43 (115)
3 d1rl1a_ b.15.1.3 (A:) Suppress 3.1 7.9E+02 0.057 17.3 5.6 58 59-119 23-81 (92)
4 d2qtva1 a.71.2.1 (A:524-626) S 3.0 2.1E+02 0.015 22.7 1.2 16 137-152 56-71 (103)
5 d1fnla1 b.1.1.4 (A:3-86) Fc ga 2.8 4.8E+02 0.035 18.2 3.3 25 54-78 5-29 (84)
6 d1m1sa_ b.1.11.2 (A:) WR4 {Nem 2.7 1E+03 0.073 17.9 5.4 23 54-76 41-63 (109)
7 d1fwxa1 b.6.1.4 (A:452-581) Ni 2.6 3.3E+02 0.024 21.7 2.2 21 58-78 48-68 (132)
8 d2j01h2 d.141.1.1 (H:83-171) R 2.5 4.4E+02 0.032 20.0 2.6 25 52-77 28-52 (89)
9 d1f2qa1 b.1.1.4 (A:4-85) IgE h 2.5 2.9E+02 0.021 19.5 1.5 21 56-76 3-23 (82)
10 d2nysa1 b.136.1.2 (A:3-119) Un 2.4 7.8E+02 0.057 19.5 4.3 41 47-88 62-107 (117)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.32 E-value=2.5e+02 Score=16.51 Aligned_cols=14 Identities=29% Similarity=1.184 Sum_probs=9.8
Q ss_pred HHHHHHH---HHHHhhh
Q psy10687 127 IIGWIYF---SAWTISF 140 (622)
Q Consensus 127 ~lG~i~~---~~Wsvs~ 140 (622)
.+||+++ +.|++++
T Consensus 3 ~lgwv~llvvftwsiam 19 (27)
T d2e74h1 3 VLGWVALLVVFTWSIAM 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHhhheeee
Confidence 5788765 5688765
No 2
>d1txka1 b.1.18.2 (A:397-511) Glucans biosynthesis protein G (MdoG, OpgG), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.60 E-value=1.4e+02 Score=24.01 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=10.3
Q ss_pred eeeecCcchhhHH
Q psy10687 2 IALDFTGGMFSIL 14 (622)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (622)
.++||+||-+..+
T Consensus 31 fvVDF~G~~l~~l 43 (115)
T d1txka1 31 FVVDFTGAEMKKL 43 (115)
T ss_dssp EEEEEECTTGGGS
T ss_pred EEEECCCCccccC
Confidence 5789999988753
No 3
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.14 E-value=7.9e+02 Score=17.33 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=29.2
Q ss_pred ecCCceeec-ccCCceeeeeeccccceeeeeeEeeeccceeccccccCCCCCceEEEEeecc
Q psy10687 59 IKPSDIHVA-VEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSIKPSDIHVAVEKDF 119 (622)
Q Consensus 59 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (622)
+.++++.|. ++..+++.+.. +........+.++.+....-..-++.+..+.++..+-+
T Consensus 23 ~~~~~v~v~~~~~~l~v~~~~---~~~~~y~~~~~L~~~I~p~~s~~~~~~~kiei~L~K~~ 81 (92)
T d1rl1a_ 23 VQKNDVNVEFSEKELSALVKL---PSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPE 81 (92)
T ss_dssp CCGGGEEEECSSSCEEEEEEC---TTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEECSS
T ss_pred CChHheEEEEecCEEEEEEEc---CCCcEEEEEEEcCcccCchhcEEEEeCCEEEEEEEECC
Confidence 345566665 33444444431 11123344555666665444444456666777666543
No 4
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.96 E-value=2.1e+02 Score=22.67 Aligned_cols=16 Identities=25% Similarity=0.548 Sum_probs=13.5
Q ss_pred HhhhhhhHHHHHhcCC
Q psy10687 137 TISFYPQLYTNYKKKS 152 (622)
Q Consensus 137 svs~~PQi~~N~rrKS 152 (622)
.++.|||.+.+.||..
T Consensus 56 ~fs~~PqfmfhLRRS~ 71 (103)
T d2qtva1 56 NFSLYPQFTYYLRRSQ 71 (103)
T ss_dssp TTTTHHHHHHHHHTST
T ss_pred HHHhhHHHHHHHhhhh
Confidence 4689999999999954
No 5
>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}
Probab=2.82 E-value=4.8e+02 Score=18.22 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=18.7
Q ss_pred eeeeeecCCceeecccCCceeeeee
Q psy10687 54 YVLYSIKPSDIHVAVEKDFRLGLAS 78 (622)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (622)
+..+.+.|++.+|.++++++|.-.+
T Consensus 5 kpvi~~~P~~~~v~~G~~vtL~C~~ 29 (84)
T d1fnla1 5 KAVVFLEPQWYSVLEKDSVTLKCQG 29 (84)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEEC
T ss_pred CCEEEECCCCcEEeCCCeEEEEEEe
Confidence 4567888999999988777665543
No 6
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=2.65 E-value=1e+03 Score=17.92 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=10.4
Q ss_pred eeeeeecCCceeecccCCceeee
Q psy10687 54 YVLYSIKPSDIHVAVEKDFRLGL 76 (622)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~ 76 (622)
++.|.++|..=-|.+.+..++.|
T Consensus 41 ~~~y~V~P~~G~I~P~~~~~i~I 63 (109)
T d1m1sa_ 41 NEHYRVRPVYGFVDAKGKSKLDI 63 (109)
T ss_dssp TTTEEEECSEEEECTTCEEEEEE
T ss_pred CCeEEEeCCeeEECCCCeEEEEE
Confidence 45555555543333333333333
No 7
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]}
Probab=2.61 E-value=3.3e+02 Score=21.71 Aligned_cols=21 Identities=10% Similarity=0.099 Sum_probs=18.5
Q ss_pred eecCCceeecccCCceeeeee
Q psy10687 58 SIKPSDIHVAVEKDFRLGLAS 78 (622)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~ 78 (622)
...|+.|+|++++.+++.+++
T Consensus 48 ~f~p~~i~V~~Gd~V~~~ltN 68 (132)
T d1fwxa1 48 SFSIESFTVKEGDEVTVIVTN 68 (132)
T ss_dssp EESCSEEEEETTCEEEEEEEE
T ss_pred cccCCEEEEcCCCEEEEEEEc
Confidence 578899999999999999876
No 8
>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}
Probab=2.47 E-value=4.4e+02 Score=19.96 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=17.7
Q ss_pred eeeeeeeecCCceeecccCCceeeee
Q psy10687 52 QHYVLYSIKPSDIHVAVEKDFRLGLA 77 (622)
Q Consensus 52 qh~~~~~~~~~~~~~~~~~~~~~~~~ 77 (622)
=|+..+.+ |+.+++..++.-.++|.
T Consensus 28 SH~I~~~i-P~~I~v~~~~~t~i~i~ 52 (89)
T d2j01h2 28 SHPVVVEP-PEGITFEVPEPTRVRVS 52 (89)
T ss_dssp SSCEEECC-CTTEEEECSSSSCEEEE
T ss_pred cccccccC-CCCeEEEecCCCEEEEE
Confidence 47777764 88899888766666555
No 9
>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.47 E-value=2.9e+02 Score=19.52 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=13.6
Q ss_pred eeeecCCceeecccCCceeee
Q psy10687 56 LYSIKPSDIHVAVEKDFRLGL 76 (622)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~ 76 (622)
.++++|+..+|.++++++|--
T Consensus 3 ~It~~P~~~~v~~G~~v~L~C 23 (82)
T d1f2qa1 3 KVSLNPPWNRIFKGENVTLTC 23 (82)
T ss_dssp CCEEESSCSEEETTCCEEEEC
T ss_pred EEEEcCCCeEEeCCCeEEEEE
Confidence 456777777777766655443
No 10
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]}
Probab=2.41 E-value=7.8e+02 Score=19.47 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=25.8
Q ss_pred EEEEeee--eeeeeecCCceeec---ccCCceeeeeeccccceeeee
Q psy10687 47 ILFMIQH--YVLYSIKPSDIHVA---VEKDFRLGLASDIIGWIYFSA 88 (622)
Q Consensus 47 ~~~~~qh--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 88 (622)
++-.+|| +| +.|+...++|+ +++.-+++|-.|+|-.+.+-.
T Consensus 62 MTIVlQhqF~d-L~V~~~~FsV~LsF~~~~e~L~IPf~aI~~F~DPs 107 (117)
T d2nysa1 62 MTIVIQHQFWD-MKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPS 107 (117)
T ss_dssp EEEEESSSCEE-EEECSSEEEEEEEETTEEEEEEEEGGGEEEEEEGG
T ss_pred cEEEEeeeecc-ceeccceEEEEEEeCCeeEEEEeehHHhheecCCC
Confidence 4455666 44 45666666666 556677888888777655443
Done!