RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10687
(622 letters)
>gnl|CDD|130026 TIGR00951, 2A43, Lysosomal Cystine Transporter. [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 220
Score = 161 bits (408), Expect = 1e-45
Identities = 86/229 (37%), Positives = 125/229 (54%), Gaps = 11/229 (4%)
Query: 383 LASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSS 442
L S I+GW Y +AW+ISFYPQ+ N+++KS GL+FDF+ LNL+GFT Y ++N
Sbjct: 2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCW 61
Query: 443 LIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMCAY 502
I ++F + V NDVFF++HA ++ + + QC YERG Q+VS +
Sbjct: 62 SITNEFPLSSPG----VTQNDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVA 117
Query: 503 FLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLL 562
L L + L + + F+ S +K+ +TL+KY PQA N+ KST SI V L
Sbjct: 118 LLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFL 177
Query: 563 DFTGGMFSILQMVILAINFVGSKLTCLGGVVVKTLLDINLIFFYSSVFY 611
DFTG +LQ + ++N G L G+ V + L N +F FY
Sbjct: 178 DFTG----LLQRIFQSVNETGDPL--KAGLFVVSSL-FNGLFAAQVFFY 219
Score = 141 bits (358), Expect = 9e-39
Identities = 78/233 (33%), Positives = 110/233 (47%), Gaps = 44/233 (18%)
Query: 123 LASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSS 182
L S I+GW Y +AW+ISFYPQ+ N+++KS GL+FDF+ LNL+GFT Y ++N
Sbjct: 2 LLSQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCW 61
Query: 183 LIQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSIGARCLMCAY 242
I ++F + V NDVFF++HA +I + + QC YERG Q+VS +
Sbjct: 62 SITNEFPLSSPG----VTQNDVFFTLHAILICFIVLHQCGDYERGWQRVSNPWILRILVA 117
Query: 243 FLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVF 302
L L + L + + F+ S +K+ +TL+KY PQ
Sbjct: 118 LLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKYFPQ-------------------- 157
Query: 303 FSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMV 355
A N+ KST SI V LDFTG + I Q V
Sbjct: 158 --------------------AATNYHNKSTGQLSIITVFLDFTGLLQRIFQSV 190
Score = 31.0 bits (70), Expect = 1.5
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 4 LDFTGGMFSILQMVILAINFDDWDGFLIDRTKLGLGLFSVSFDILFMIQHYVLY 57
LDFTG +LQ + ++N D K GL + S F+ LF Q + +
Sbjct: 177 LDFTG----LLQRIFQSVNETG------DPLKAGLFVVSSLFNGLFAAQVFFYW 220
>gnl|CDD|202926 pfam04193, PQ-loop, PQ loop repeat. Members of this family are all
membrane bound proteins possessing a pair of repeats
each spanning two transmembrane helices connected by a
loop. The PQ motif found on loop 2 is critical for the
localisation of cystinosin to lysosomes. However, the PQ
motif appears not to be a general lysosome-targeting
motif. It is thought likely to possess a more general
function. Most probably this involves a glutamine
residue.
Length = 61
Score = 57.2 bits (139), Expect = 9e-11
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 124 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSL 183
S+++G+I W +S+ PQ+ NY++KS GL+ FL L L+G LY LYN+ L
Sbjct: 1 LSNVLGYISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPL 60
Query: 184 I 184
+
Sbjct: 61 L 61
Score = 57.2 bits (139), Expect = 9e-11
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 384 ASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSL 443
S+++G+I W +S+ PQ+ NY++KS GL+ FL L L+G LY LYN+ L
Sbjct: 1 LSNVLGYISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPL 60
Query: 444 I 444
+
Sbjct: 61 L 61
Score = 51.8 bits (125), Expect = 9e-09
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 530 VKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFV 582
+ L + L+ YIPQ N++RKST G SI +LL G + +L ++ +
Sbjct: 8 ISLVLWLVSYIPQIIKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPL 60
Score = 38.3 bits (90), Expect = 4e-04
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 324 YMNFQRKSTSGWSIGNVLLDFTGGMFSILQMVILAINFV 362
N++RKST G SI +LL G + +L ++ +
Sbjct: 22 IKNYRRKSTEGLSILFLLLWLLGDILYLLYNILNGFPPL 60
Score = 36.4 bits (85), Expect = 0.002
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 77 ASDIIGWIYFSAWTISFYPQLYTNYKKKS 105
S+++G+I W +S+ PQ+ NY++KS
Sbjct: 1 LSNVLGYISLVLWLVSYIPQIIKNYRRKS 29
>gnl|CDD|128923 smart00679, CTNS, Repeated motif present between transmembrane
helices in cystinosin, yeast ERS1p, mannose-P-dolichol
utilization defect 1, and other hypothetical proteins.
Function unknown, but likely to be associated with the
glycosylation machinery.
Length = 32
Score = 42.1 bits (100), Expect = 1e-05
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 537 IKYIPQAYMNFQRKSTSGWSIGNVLLDFTGG 567
+ +PQ N++RKST G SI VLL G
Sbjct: 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGD 31
Score = 40.5 bits (96), Expect = 4e-05
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 138 ISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFT 169
+S PQ+ NY++KS GL+ F+ L L+G
Sbjct: 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32
Score = 40.5 bits (96), Expect = 4e-05
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 398 ISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFT 429
+S PQ+ NY++KS GL+ F+ L L+G
Sbjct: 1 VSLLPQIIKNYRRKSTEGLSILFVLLWLLGDI 32
Score = 31.7 bits (73), Expect = 0.061
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 323 AYMNFQRKSTSGWSIGNVLLDFTGG 347
N++RKST G SI VLL G
Sbjct: 7 IIKNYRRKSTEGLSILFVLLWLLGD 31
Score = 25.5 bits (57), Expect = 8.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 91 ISFYPQLYTNYKKKS 105
+S PQ+ NY++KS
Sbjct: 1 VSLLPQIIKNYRRKS 15
>gnl|CDD|168660 PRK06752, PRK06752, single-stranded DNA-binding protein; Validated.
Length = 112
Score = 29.6 bits (66), Expect = 1.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 95 PQLYTNYKKKSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNY-KKKSV 153
P+LY Y K+ + + + VAV + FR L + +I W S + T Y K S+
Sbjct: 15 PELY--YTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCVVWRKS--AENVTEYCTKGSL 70
Query: 154 IGL 156
+G+
Sbjct: 71 VGI 73
>gnl|CDD|226580 COG4095, COG4095, Uncharacterized conserved protein [Function
unknown].
Length = 89
Score = 28.1 bits (63), Expect = 4.2
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 127 IIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLY 174
+IG I T +F PQL K K+ ++ + I L+ +Y
Sbjct: 7 VIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIY 54
Score = 28.1 bits (63), Expect = 4.2
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 387 IIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFTLYSLY 434
+IG I T +F PQL K K+ ++ + I L+ +Y
Sbjct: 7 VIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIY 54
>gnl|CDD|236051 PRK07565, PRK07565, dihydroorotate dehydrogenase 2; Reviewed.
Length = 334
Score = 29.1 bits (66), Expect = 7.3
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 244 LYLSGVLGLVLFNKF-QW-ID 262
L +G GLVLFN+F Q ID
Sbjct: 186 LDAAGADGLVLFNRFYQPDID 206
Score = 29.1 bits (66), Expect = 7.3
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 504 LYLSGVLGLVLFNKF-QW-ID 522
L +G GLVLFN+F Q ID
Sbjct: 186 LDAAGADGLVLFNRFYQPDID 206
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein
which is localized in the photoreceptor outer segment
discs. Mutation/s in its genetic loci is implicated in
the recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 29.2 bits (65), Expect = 9.3
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 477 TIFQCLIYERGTQKVSIGARCLMCAYF-LYLSGVLGLVLFNKFQWIDFLNQCSDVKLTIT 535
TI QC + K S+ A C YF LYL +L F W D + +D+K ++
Sbjct: 744 TIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILC------FAWQDRMT--ADLKTAVS 795
Query: 536 LIKYIPQAY-----MNFQRKSTS-GWS-IGNVLLDFTGGMFSIL---QMVIL 577
L+ + + + F+ + WS IGN L+ G FS L +M++L
Sbjct: 796 LLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPLE--GDEFSFLLSMKMMLL 845
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.144 0.446
Gapped
Lambda K H
0.267 0.0863 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,190,882
Number of extensions: 3243412
Number of successful extensions: 3552
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3541
Number of HSP's successfully gapped: 71
Length of query: 622
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 519
Effective length of database: 6,369,140
Effective search space: 3305583660
Effective search space used: 3305583660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (27.4 bits)