RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10687
(622 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 7e-08
Identities = 71/358 (19%), Positives = 109/358 (30%), Gaps = 120/358 (33%)
Query: 254 LFNKF-QWIDFLNQCSDVKLTITLIKYIPQDQFFEKNGTNSNPVQLNDVFFSIHATIITL 312
L KF ++ L + S V ++ + FE + ++ ND IHA L
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE--FE-----NCYLEGND----IHALAAKL 108
Query: 313 LTI-------FQCLI---YEAYM----NFQRKSTSGW----SIGNVLLDFT--GG----- 347
L + LI A + F +KS S GN L GG
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL-VAIFGGQGNTD 167
Query: 348 -MFSILQ--------MVILAINFVGSNIKP-SDIHVAVEKDFRLGLASDIIGWI------ 391
F L+ +V I F + + EK F GL +I+ W+
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWLENPSNT 225
Query: 392 ----YFSAWTISFYP-----QL--YTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYS 440
Y + IS P QL Y K ++G L L G T +S G +
Sbjct: 226 PDKDYLLSIPISC-PLIGVIQLAHYVVTAK--LLGFTPGELRSYLKGATGHSQ---GLVT 279
Query: 441 SSLIQDQFFEKNGTNSNPVQLNDVFFSIHATIVTLLTIFQCLIYERGTQKVSIGARCLMC 500
+ I T+S + FF +T+L F IG RC
Sbjct: 280 AVAIA-------ETDSW-----ESFFVSVRKAITVL--FF------------IGVRCYEA 313
Query: 501 AYFLYLS-------------------GVLGLVLFNKFQWIDFLNQC--SDVKLTITLI 537
L + L +++ N + ++ I+L+
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Score = 52.0 bits (124), Expect = 5e-07
Identities = 77/483 (15%), Positives = 131/483 (27%), Gaps = 184/483 (38%)
Query: 28 GFL---IDRTKLG-----LGLFSVSFDILFMIQHYVLYSIKPSDIHVAV-----EKDFRL 74
G++ ++ +K+G L L F+ ++ + +DIH E D L
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYL---------EGNDIHALAAKLLQENDTTL 116
Query: 75 GLASDIIGWIYFSAWTIS----------------------FYPQ---------------- 96
++I Y +A ++
Sbjct: 117 VKTKELIK-NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 97 LYTNYKKKSIKP------------SDIHVAVEKDFRLGLASDIIGWI----------YFS 134
LY Y + + EK F GL +I+ W+ Y
Sbjct: 176 LYQTYHV-LVGDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWLENPSNTPDKDYLL 232
Query: 135 AWTISFYP-----QL--YTNYKKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQ 187
+ IS P QL Y K ++G L L G T +S G ++ I
Sbjct: 233 SIPISC-PLIGVIQLAHYVVTAK--LLGFTPGELRSYLKGATGHSQ---GLVTAVAIA-- 284
Query: 188 FFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSIGARCLMCAYFLYLS 247
T+S + FF IT+L F IG RC L
Sbjct: 285 -----ETDSW-----ESFFVSVRKAITVL--FF------------IGVRCYEAYPNTSLP 320
Query: 248 -------------------GVLGLVLFNKFQWIDFLNQC--SDVKLTITLIKYIPQDQFF 286
+ L +++ N + ++ I+L+
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV--------- 371
Query: 287 EKNGTNS-----NPVQL---NDVFFSIHATIITLLTIFQCLI-YEAYMNFQRKSTSGWSI 337
NG + P L N A + Q I + +RK
Sbjct: 372 --NGAKNLVVSGPPQSLYGLNLTLRKAKAPS----GLDQSRIPFS-----ERKLKFSNRF 420
Query: 338 GNVLLDF-TGGMFSILQMVILAINFVGSNIKPSDIHVAVE-----KDFRL---GLASDII 388
V F + + ++ + + DI + V D R+ ++ I+
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 389 GWI 391
I
Sbjct: 481 DCI 483
Score = 39.6 bits (92), Expect = 0.004
Identities = 71/403 (17%), Positives = 117/403 (29%), Gaps = 174/403 (43%)
Query: 43 VSFDILFMIQ--HYV----LYSIKPSDIHVAVEKDFR--LGLASDII---------GWIY 85
+S ++ +IQ HYV L P ++ + G + ++ W
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELR----SYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 86 F-----SAWTISF---------YPQLYTNYKKKSIKPSDIHVAVEKDFRLGLASDIIGWI 131
F A T+ F YP S+ PS + ++E + G+ S
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNT-------SLPPSILEDSLENNE--GVPS------ 336
Query: 132 YFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNLIGFT---------LY-SLYNLGY--- 178
P L S+ L + + + + T + SL N G
Sbjct: 337 ----------PML-------SISNLTQEQV-QDYVNKTNSHLPAGKQVEISLVN-GAKNL 377
Query: 179 ----YSSSLIQ-DQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYERGTQKVSI 233
SL + K S Q + + FS ER K+
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQ-SRIPFS-----------------ER---KLKF 416
Query: 234 GARCLMCAYFL---------YLSGVLGLVL----FNKFQWIDFLNQCSDVKLTITLIKYI 280
R FL L L+ N + D++ I
Sbjct: 417 SNR------FLPVASPFHSHLLVPASDLINKDLVKNNVSF-----NAKDIQ--------I 457
Query: 281 PQDQFFEKNGTNSNPVQLNDVFFSIHATIITLLTIFQCLIYEAYMNFQRKSTSGWSIGNV 340
P + +G++ L + SI I+ + +E F K+T
Sbjct: 458 P--VYDTFDGSD-----LRVLSGSISERIVDCIIRLPVK-WETTTQF--KATH------- 500
Query: 341 LLDF-TGGMFSILQM-----------VILAINFVGS-NIKPSD 370
+LDF GG + + VI+A G+ +I P D
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTGVRVIVA----GTLDINPDD 539
Score = 31.2 bits (70), Expect = 1.5
Identities = 46/306 (15%), Positives = 75/306 (24%), Gaps = 141/306 (46%)
Query: 368 PSDIHVAVE--KDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLGLNL 425
P+ ++ F+ + + + L FLG
Sbjct: 23 PTASFFIASQLQEQ-------------FNKILPEPTEGFAADDEPTTPAELVGKFLG--- 66
Query: 426 IGFTLYSLYNLGYYSSSLIQD--------------QFFEKNGTNSNPVQLNDVFFSIHAT 471
Y SSL++ FE + ++ ND IHA
Sbjct: 67 -------------YVSSLVEPSKVGQFDQVLNLCLTEFE-----NCYLEGND----IHAL 104
Query: 472 IVTLLT-----------IFQCLIYERGT--------------QKVSIG-ARCLMC----- 500
LL + + I R + V G A+ +
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 501 ---AYF-----LY---------LSGVLGLVL-----------------FNKFQWI----- 521
YF LY L L N +W+
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 522 ----DFLNQC--SDVKLTITLIKYIPQA--YMNFQRKSTSGWSIGNVLLDFTGGMFSILQ 573
D+L S L I +I Q Y+ + G++ G L + G Q
Sbjct: 225 TPDKDYLLSIPIS-CPL-IGVI----QLAHYVVTAK--LLGFTPGE-LRSYLKGATGHSQ 275
Query: 574 MVILAI 579
++ A+
Sbjct: 276 GLVTAV 281
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 3e-07
Identities = 83/570 (14%), Positives = 170/570 (29%), Gaps = 164/570 (28%)
Query: 116 EKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKK--KSVIGLNFDFLGLNLIGFTLYSL 173
E D + + G WT+ + +K + V+ +N+ FL S
Sbjct: 50 EIDHIIMSKDAVSG-TLRLFWTLLSKQE--EMVQKFVEEVLRINYKFL---------MSP 97
Query: 174 YNLGYYSSSLIQDQFFEKNGTNSNPVQLNDVFFSIHATII-TLLTIFQCLIYERGTQKVS 232
S++ + E+ N Q VF + + + L + Q L+ R + V
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQ---VFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 233 I------GARCLMCAYFLYLSGVLGLVLFNKFQWIDFLNQCSDVKLTITLIKYIPQDQFF 286
I G + A + LS + + K W++ N S + L K + Q
Sbjct: 155 IDGVLGSGKTWV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---I 209
Query: 287 EKNGTNSNPVQLNDVFFSIHATIITLLTIFQ------CL----------IYEAYMNFQRK 330
+ N T S +++ IH+ L + + CL + A N K
Sbjct: 210 DPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCK 267
Query: 331 ---STSGWSIGNVL---------LDFTGGMFSILQMVILAINFVGSNIKPSDIHVAVEKD 378
+T + + L LD + ++ L + ++ + +P D+ V
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTT 325
Query: 379 FRLGLASDIIG---------WIYFSAWTISFYPQLYTNYKKKSVIGLNFDFLG------- 422
L+ II W + + K ++I + + L
Sbjct: 326 NPRRLS--IIAESIRDGLATWDNW---------KHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 423 -LNLIGF---------TLYSL-YNLGYYSSSLIQDQFFEKNGTNSNP----VQLNDVFFS 467
L F L + +++ ++ ++ + + P + + ++
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 468 IHATIVTLLTIFQCLI--YERGTQKVSIGARCLMCAYFLYLSGVLGLVLFNKFQWIDFLN 525
+ + + + ++ Y + F D +
Sbjct: 435 LKVKLENEYALHRSIVDHYN----------------------------IPKTFDSDDLIP 466
Query: 526 QCSDVKLTITLIKYIPQAYMNFQRKSTSGWSIGNVLLDFT-GGMFSILQMVILAINFVGS 584
D +Y Y IG+ L + ++ +MV L F+
Sbjct: 467 PYLD--------QYF---Y----------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 585 KL------TCLGGVVVKTLLDINLIFFYSS 608
K+ G ++ TL + FY
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLK---FYKP 532
Score = 42.1 bits (98), Expect = 6e-04
Identities = 36/260 (13%), Positives = 84/260 (32%), Gaps = 69/260 (26%)
Query: 14 LQMVILAINFDD----WDGFL-IDRTKLGLGLFSVSFDILF---MIQHYVLYSIKPSDIH 65
++ I+A + D WD + ++ KL + S ++L + + S+ P H
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 66 V-------------------AVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTNYKKKSI 106
+ V K + L + S +I P +Y K K
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSL---VEKQPKESTISI---PSIYLELKVKLE 440
Query: 107 KPSDIHVAVEKDFRLGLASD--------IIGWIYF----------SAWTISFYPQLYTNY 148
+H ++ + + D + + Y ++ + ++
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF--- 497
Query: 149 KKKSVIGLNFDFLGLNLIGFTLYSLYNLGYYSSSLIQDQFFEKNGTNSNPV---QLNDV- 204
L+F FL + + G ++L Q +F++ +++P +N +
Sbjct: 498 -------LDFRFLEQKIR-HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 205 -FFSIHATIITLLTIFQCLI 223
F + + + + L+
Sbjct: 550 DFLPKIEENL-ICSKYTDLL 568
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.023
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 16/39 (41%)
Query: 271 KLTITLIKYIPQDQFFEKNGTNSNPVQLNDVFFSIHATI 309
KL +L Y +S P +I AT+
Sbjct: 24 KLQASLKLYAD----------DSAPA------LAIKATM 46
Score = 31.1 bits (69), Expect = 0.49
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 20/46 (43%)
Query: 102 KKKSIKPSDIHVAVEKDFRLGLASDIIGWIYFSAWTISFYPQLYTN 147
+K+++K ++ +L A D SA P L
Sbjct: 18 EKQALK------KLQASLKL-YADD-------SA------PALAIK 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.144 0.446
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,560,911
Number of extensions: 569405
Number of successful extensions: 1021
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1015
Number of HSP's successfully gapped: 15
Length of query: 622
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 523
Effective length of database: 3,937,614
Effective search space: 2059372122
Effective search space used: 2059372122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.4 bits)