RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10687
         (622 letters)



>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
           (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 78

 Score = 28.3 bits (63), Expect = 0.51
 Identities = 7/27 (25%), Positives = 17/27 (62%)

Query: 102 KKKSIKPSDIHVAVEKDFRLGLASDII 128
           K+++++ +DI +A+ K  +     DI+
Sbjct: 50  KRRTLQRNDIAMAITKFDQFDFLIDIV 76


>d1fyhb2 b.1.2.1 (B:110-223) Interferon-gamma receptor alpha chain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 25.6 bits (56), Expect = 8.9
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 214 TLLTIFQCLIYERGTQKVSIGARCLMCAYFLY 245
            ++ IF   ++  G ++         C   +Y
Sbjct: 15  IMIDIFHPSVFVNGDEQEVDYDPETTCYIRVY 46



 Score = 25.6 bits (56), Expect = 8.9
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 474 TLLTIFQCLIYERGTQKVSIGARCLMCAYFLY 505
            ++ IF   ++  G ++         C   +Y
Sbjct: 15  IMIDIFHPSVFVNGDEQEVDYDPETTCYIRVY 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.144    0.446 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,395,052
Number of extensions: 115694
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 8
Length of query: 622
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 531
Effective length of database: 1,158,166
Effective search space: 614986146
Effective search space used: 614986146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.7 bits)