RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10688
(169 letters)
>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding
protein, golgi apparatus, myristate; HET: I6P; 1.50A
{Homo sapiens} PDB: 1smb_A*
Length = 154
Score = 142 bits (359), Expect = 5e-44
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 7 LKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDN---KFGENIFFYTSS 63
LK HNE R+ H +PPL K L+ A ++ L H P++ + GEN+ + +
Sbjct: 14 LKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYD 73
Query: 64 FYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGL 123
+ WY+EI++Y + + P + TGHFT +VW T ++G+G
Sbjct: 74 QTGKE------VADRWYSEIKNY----NFQQP----GFTSGTGHFTAMVWKNTKKMGVGK 119
Query: 124 SRNASSDFHKVIVVANYAPPGNILGR--FKENVPMP 157
+ + VVA Y P GN++ F+ENV P
Sbjct: 120 ASASD---GSSFVVARYFPAGNVVNEGFFEENVLPP 152
>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense;
NMR {Solanum lycopersicum} SCOP: d.111.1.1
Length = 135
Score = 133 bits (336), Expect = 8e-41
Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 18/144 (12%)
Query: 7 LKYHNEKRELHLLPPLSYNKQLSALALDWANQLLEADKFSHRPDNKFGENIFFYTSSFYV 66
L HN+ R + P+S++ L++ A ++AN H GEN+ F
Sbjct: 8 LAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSG---AGENLAKGGGDFTG 64
Query: 67 DDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLGLSRN 126
AV W +E Y + G H+TQVVW + +G G +R
Sbjct: 65 RA------AVQLWVSERPSYN--YATNQC----VGGKKCRHYTQVVWRNSVRLGCGRARC 112
Query: 127 ASSDFHKVIVVANYAPPGNILGRF 150
+ + NY P GN +G+
Sbjct: 113 NNG---WWFISCNYDPVGNWIGQR 133
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted,
cross- reactivity; 3.05A {Solenopsis invicta}
Length = 218
Score = 115 bits (289), Expect = 9e-33
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 22/162 (13%)
Query: 7 LKYHNEKRELHLL-----------------PPLSYNKQLSALALDWANQ-LLEADKFSHR 48
+ HNE R+ P L+++ +L+ +A WANQ E D +
Sbjct: 47 VNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQCTFEHDACRNV 106
Query: 49 PDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHF 108
G+NI +SS +K + + WYNE++D+ + GH+
Sbjct: 107 ERFAVGQNIAATSSS--GKNKSTPNEMILLWYNEVKDFD-NRWISSFPSDDNILMKVGHY 163
Query: 109 TQVVWNGTTEVGLGLSR-NASSDFHKVIVVANYAPPGNILGR 149
TQ+VW TT++G G ++ K +V NY P GN+LG
Sbjct: 164 TQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGA 205
>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula
vulgaris} SCOP: d.111.1.1
Length = 209
Score = 114 bits (287), Expect = 1e-32
Identities = 44/161 (27%), Positives = 62/161 (38%), Gaps = 25/161 (15%)
Query: 7 LKYHNEKRELHLL-----------------PPLSYNKQLSALALDWANQ-LLEADKFSHR 48
LK HN+ R+ L +N +L+ +A WANQ D
Sbjct: 50 LKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYGHDTCRDV 109
Query: 49 PDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHF 108
+ G+N+ S+ D K V W +E++DY TGH+
Sbjct: 110 AKYQVGQNVALTGSTAAKYD--DPVKLVKMWEDEVKDYNPKKKFSGN-----DFLKTGHY 162
Query: 109 TQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGR 149
TQ+VW T EVG G + +HK +V NY P GN
Sbjct: 163 TQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNE 203
>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra,
toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A
1rc9_A 1wvr_A
Length = 221
Score = 114 bits (286), Expect = 2e-32
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 7 LKYHNEKRELH-----LLPPLSYNKQLSALALDWANQLLEADKFSHRPDN-KFGENIFFY 60
+ HN R + + + + ++ A WAN +H PDN + E I
Sbjct: 19 VDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTC----SLNHSPDNLRVLEGIQCG 74
Query: 61 TSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVG 120
S + + + + W++E +++ Y P G+ TGH+TQ+VW T G
Sbjct: 75 ESIYMSSNARTWTEIIHLWHDEYKNFV-YGVGASP-----PGSVTGHYTQIVWYQTYRAG 128
Query: 121 LGLSRNASSDFHKVIVVANYAPPGNILGRF 150
+S S V Y P GN G+
Sbjct: 129 CAVSY-CPSSAWSYFYVCQYCPSGNFQGKT 157
>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}
Length = 196
Score = 110 bits (277), Expect = 3e-31
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 33/171 (19%)
Query: 7 LKYHNEKRELHLL-----------------PPLSYNKQLSALALDWANQLLEADKFSHRP 49
L+ HN R L ++Y+ ++ A++ A Q F H
Sbjct: 21 LEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQC----VFKHSQ 76
Query: 50 DN---KFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTG 106
N GENIF + S D +A ++A AW+ E+ + L G
Sbjct: 77 PNQRKGLGENIFMSSDSGM-DKAKAAEQASKAWFGELAEKG--VGQNLKLTGGLFSRGVG 133
Query: 107 HFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGR--FKENVP 155
H+TQ+VW T ++G + ++ VV Y P GN++G+ +++ P
Sbjct: 134 HYTQMVWQETVKLGCYVEACSN----MCYVVCQYGPAGNMMGKDIYEKGEP 180
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 110 bits (276), Expect = 6e-31
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 23/155 (14%)
Query: 7 LKYHNEKRELHL-----LPPLSYNKQLSALALDWANQL-LEADKFSHRPDNKF--GENIF 58
+ HN R + + +N + A WA++ + R K GENIF
Sbjct: 10 VDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWADRCTFAHSPPNTRTVGKLRCGENIF 69
Query: 59 FYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTE 118
+ F V AWY+EI+++ +PP G+ GH+TQVVW +
Sbjct: 70 MSSQPFPWSG------VVQAWYDEIKNFVYGIGAKPP------GSVIGHYTQVVWYKSHL 117
Query: 119 VGLGLSRNASSDFHKVIVVANYAPPGNILGRFKEN 153
+G ++ +SS K + V Y P GNI G
Sbjct: 118 IGCASAKCSSS---KYLYVCQYCPAGNIRGSIATP 149
>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein;
1.85A {Homo sapiens} PDB: 3q2r_A
Length = 205
Score = 104 bits (262), Expect = 6e-29
Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 38/164 (23%)
Query: 7 LKYHNEKRELHL-----LPPLSYNKQLSALALDWANQLLEADKFSHRPDNK--------- 52
++ HN+ R + ++++ L+ +A WA+ +FSH K
Sbjct: 23 VRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNC----QFSHNTRLKPPHKLHPNF 78
Query: 53 --FGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQ 110
GENI+ + + ++ A+T WY+EI+DY + GH+TQ
Sbjct: 79 TSLGENIWTGSVPIF-----SVSSAITNWYDEIQDYD--------FKTRICKKVCGHYTQ 125
Query: 111 VVWNGTTEVGLGLSR-----NASSDFHKVIVVANYAPPGNILGR 149
VVW + +VG + + + + NY P GN
Sbjct: 126 VVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNYPTW 169
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein,
cysteine-rich secretory PROT domain, immune system;
2.20A {Necator americanus}
Length = 424
Score = 108 bits (271), Expect = 1e-28
Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 30/167 (17%)
Query: 5 YTLKYHNEKRELHLL-----------------PPLSYNKQLSALALDWANQLLEADKFSH 47
L HNE R + Y+ ++ A A+ N+ + H
Sbjct: 240 TFLSVHNEFRSSVARGLEPDALGGNAPKAAKMLKMVYDCEVEASAIRHGNKC----VYQH 295
Query: 48 ---RPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYR-EYFDLEPPLEALTTGN 103
GENI+ TS D +A K+A W+NE+++Y ++
Sbjct: 296 SHGEDRPGLGENIY-KTSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLTTALWNRPNM 354
Query: 104 PTGHFTQVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGRF 150
GH+TQ+ W+ T ++G + F V Y P GN +G
Sbjct: 355 QIGHYTQMAWDTTYKLGCAVVFCNDFTF----GVCQYGPGGNYMGHV 397
Score = 104 bits (260), Expect = 4e-27
Identities = 28/172 (16%), Positives = 52/172 (30%), Gaps = 31/172 (18%)
Query: 7 LKYHNEKR----------ELHLLPP------LSYNKQLSALALDWANQLLEADKFSHRPD 50
L +HN R L P LS++ + D
Sbjct: 41 LDFHNNARRRVAKGLEDSNSGKLNPAKNMYKLSWDCAMEQQLQDAIQSC----PSGFAGI 96
Query: 51 NKFGENIFFYTSS-FYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFT 109
+N ++SS Y D I+ ++ W++ + + TG F+
Sbjct: 97 QGVAQNTMSWSSSGGYPDPSVKIEPTLSGWWSGAKKN--GVGPDNK----YTGGGLFAFS 150
Query: 110 QVVWNGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGRFKENVPMPAEWK 161
+V++ TT++G + K+ V Y G I + +
Sbjct: 151 NMVYSETTKLGCAYKVCGT----KLAVSCIYNGVGYITNQPMWETGQACQTG 198
>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland,
protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB:
3u3n_C* 3u3u_C*
Length = 233
Score = 90.5 bits (224), Expect = 3e-23
Identities = 24/156 (15%), Positives = 49/156 (31%), Gaps = 16/156 (10%)
Query: 7 LKYHNEKRELHL-----------LPPLSYNKQLSALALDWANQ-LLEADKFSHRPDNKF- 53
L N+ R+ + + ++ +L+ LA + E +
Sbjct: 45 LSKINDVRDHVAKGSWGLPVAARMKVVVWDAELAGLAKRHTKGCVGETHACRNTERFWLP 104
Query: 54 GENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVW 113
G+ F Y+ KE I AV + + + ++ +
Sbjct: 105 GQLNFKYSGDKLPRIKELIDDAVKKGHLQKHNI--TREIIENYRENGPNGDVKELALAIS 162
Query: 114 NGTTEVGLGLSRNASSDFHKVIVVANYAPPGNILGR 149
+ T VG GL+ + ++ N++ N GR
Sbjct: 163 DRVTAVGCGLTTWEDGAKARALLTCNFS-SQNTRGR 197
>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function;
2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A
Length = 206
Score = 63.6 bits (154), Expect = 4e-13
Identities = 22/163 (13%), Positives = 40/163 (24%), Gaps = 44/163 (26%)
Query: 7 LKYHNEKR------ELHLLPP------LSYNKQLSALALDWANQLLEADKFSHRPDNKFG 54
+HN R E P L Y+ L A ++
Sbjct: 23 DTFHNGLRQRIAKGEAEGYGPAREMYGLVYDCGLEEEARKEIKL----PGYADLH----H 74
Query: 55 ENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWN 114
+ ++ + A+K+ + + + QVV+
Sbjct: 75 RGVTRFSGDYEGSAISALKEILETFSADK----------------------NSMRQVVYP 112
Query: 115 GTTEVGLGLS--RNASSDFHKVIVVANYAPPGNILGRFKENVP 155
T G RN + ++ V Y F+ P
Sbjct: 113 KATRFGCSGRLRRNKKTGMRRMDWVCVYDKKPKDGESFEGGKP 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.33
Identities = 30/202 (14%), Positives = 53/202 (26%), Gaps = 62/202 (30%)
Query: 5 YTLKYHNEKREL-HLLPPLSYNKQLSALALD--WANQLLEADKFSHR------------- 48
L+ H+ + EL LL Y L L L + A F+
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKAWNA--FNLSCKILLTTRFKQVT 278
Query: 49 ----PDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNP 104
++ ++ + D+ +++ + + + DL P E LT NP
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSL---LLKYLDCRPQ-----DL--PREVLT-TNP 327
Query: 105 T-----GHFTQV---VWNGTTEVGLGLSRNASSDFHKVIVVA-NYAPPGNI------LGR 149
+ W+ V +I + N P L
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNC-------DKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 150 FKENVPMPAE-----WKKKKSQ 166
F + +P W
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKS 402
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 26.9 bits (59), Expect = 2.9
Identities = 3/36 (8%), Positives = 14/36 (38%)
Query: 59 FYTSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEP 94
+ S ++ +++ +A + + + Y +
Sbjct: 141 WIYSIGNAKARDFLRREFSARGDVFREEKVYITVPR 176
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 3.1
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 14 RELH-LLPPLSYNKQLSALA-LDWANQLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEA 71
++H L L + + + + A + RP +K + F V + A
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA----VGEGNA 154
Query: 72 IKKAV-------TAWYNEIED-YREYFDLEPPLEAL 99
A+ ++ E+ D Y+ Y + L
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTY---HVLVGDL 187
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel;
1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2
d.54.1.1 PDB: 1kkr_A*
Length = 413
Score = 26.9 bits (59), Expect = 3.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 62 SSFYVDDKEAIKK 74
SSFY DD++AIK
Sbjct: 13 SSFYFDDQQAIKN 25
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A
{Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Length = 318
Score = 26.7 bits (58), Expect = 3.8
Identities = 10/72 (13%), Positives = 21/72 (29%)
Query: 61 TSSFYVDDKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVG 120
E +K A+ ++ Y +Y D P + + ++ V
Sbjct: 17 AEIVADKTVEVVKNAIETADGALDLYNKYLDQVIPWQTFDETIKELSRFKQEYSQAASVL 76
Query: 121 LGLSRNASSDFH 132
+G + D
Sbjct: 77 VGDIKTLLMDSQ 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 5.0
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 21/51 (41%)
Query: 68 DKEAIKKAVTAWYNEIEDYREYFDLEPPLEALTTGNPTGHFTQVVWNGTTE 118
+K+A+KK + ++ Y + D P L A+ T E
Sbjct: 18 EKQALKKLQAS----LKLYAD--DSAPAL-AI--------------KATME 47
>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA
repair; 2.00A {Homo sapiens} SCOP: a.4.2.1 c.55.7.1 PDB:
1eh7_A 1eh8_A*
Length = 207
Score = 26.2 bits (58), Expect = 5.7
Identities = 7/45 (15%), Positives = 10/45 (22%), Gaps = 4/45 (8%)
Query: 82 EIEDY----REYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLG 122
+ Y + P QV+W V G
Sbjct: 65 WLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFG 109
>3l00_A SNAP-TAG; protein TAG, protein engineering, benzylguanine,
benzylated transferase; HET: BCS; 1.70A {Homo sapiens}
PDB: 3kzy_A* 3kzz_A* 1yfh_A* 1t39_A* 1qnt_A 1t38_A*
Length = 182
Score = 25.8 bits (57), Expect = 6.3
Identities = 7/45 (15%), Positives = 10/45 (22%), Gaps = 4/45 (8%)
Query: 82 EIEDY----REYFDLEPPLEALTTGNPTGHFTQVVWNGTTEVGLG 122
+ Y + P QV+W V G
Sbjct: 68 WLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFG 112
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural
proteomics in europe, spine, structural genomics; 2.5A
{Mycobacterium tuberculosis} SCOP: d.17.4.8
Length = 149
Score = 25.8 bits (56), Expect = 6.3
Identities = 13/76 (17%), Positives = 23/76 (30%), Gaps = 10/76 (13%)
Query: 38 QLLEADKFSHRPDNKFGENIFFYTSSFYVDDKEAIKKAVTAWYN---EIED-----YREY 89
++ F + + T D V W E++D +R+Y
Sbjct: 66 RMQGRVGFEVKIHRIGADGAAVLT--ERTDALIIGPLRVQFWVCGVFEVDDGRITLWRDY 123
Query: 90 FDLEPPLEALTTGNPT 105
FD+ + L G
Sbjct: 124 FDVYDMFKGLLRGLVA 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.409
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,747,142
Number of extensions: 156113
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 28
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.6 bits)